Citrus Sinensis ID: 013338
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | 2.2.26 [Sep-21-2011] | |||||||
| P58742 | 546 | Aladin OS=Mus musculus GN | yes | no | 0.716 | 0.584 | 0.293 | 6e-33 | |
| Q9NRG9 | 546 | Aladin OS=Homo sapiens GN | yes | no | 0.714 | 0.582 | 0.298 | 5e-31 | |
| Q86HX1 | 1114 | Protein HIRA OS=Dictyoste | no | no | 0.361 | 0.144 | 0.241 | 2e-07 | |
| Q652L2 | 975 | Protein HIRA OS=Oryza sat | no | no | 0.242 | 0.110 | 0.313 | 1e-06 | |
| O42611 | 1025 | Protein HIRA OS=Takifugu | N/A | no | 0.359 | 0.156 | 0.262 | 5e-06 | |
| Q8QFR2 | 1013 | Protein HIRA OS=Xenopus l | N/A | no | 0.359 | 0.157 | 0.268 | 8e-06 | |
| P79987 | 1019 | Protein HIRA OS=Gallus ga | no | no | 0.355 | 0.155 | 0.276 | 3e-05 | |
| Q9LXN4 | 1024 | Protein HIRA OS=Arabidops | no | no | 0.238 | 0.103 | 0.3 | 4e-05 | |
| Q32SG6 | 964 | Protein HIRA OS=Zea mays | N/A | no | 0.395 | 0.182 | 0.246 | 5e-05 | |
| O15736 | 612 | Protein tipD OS=Dictyoste | no | no | 0.161 | 0.117 | 0.350 | 5e-05 |
| >sp|P58742|AAAS_MOUSE Aladin OS=Mus musculus GN=Aaas PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 142 bits (358), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 107/364 (29%), Positives = 153/364 (42%), Gaps = 45/364 (12%)
Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS 159
L+ +WH H K VA + S +V ++ L QR+V L W+P
Sbjct: 154 LRVFAWHPHTNKFAVALLDDSIRVY-----NANSTIVPSLKHRLQRNVAALAWKPLSASV 208
Query: 160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219
L+V C+ I IW + SG A L P +T+L+
Sbjct: 209 LAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLA 251
Query: 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGT 277
W P+G +L SAS + +WDV+ P+ RG GG++ L WSP G A
Sbjct: 252 WAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAV 310
Query: 278 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337
F +WE WT E W + SG W P+G +L G + S+ F + + H+
Sbjct: 311 FRVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVG 370
Query: 338 PVDLPDIVSLTGSQGIE-------------KIAWDASGERLAVSYKGGDDIYKG--LIAI 382
IV+ I+ + WD SGERLAV KG + G +I +
Sbjct: 371 GAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPQVQDGNPVILL 430
Query: 383 YDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441
+ R +P+ L G I+G PG + +FH F +G LLSVCWS+G PL F +
Sbjct: 431 FRTRNSPVFELLPCGIIQGEPGAQAQ--LITFHPSFNKGALLSVCWSTGRITHIPLYFVN 488
Query: 442 HLLP 445
P
Sbjct: 489 AQFP 492
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Plays a role in the normal development of the peripheral and central nervous system. Mus musculus (taxid: 10090) |
| >sp|Q9NRG9|AAAS_HUMAN Aladin OS=Homo sapiens GN=AAAS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 155/365 (42%), Gaps = 47/365 (12%)
Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS 159
L+ +WH H K VA + S +V ++ L QR+V L W+P
Sbjct: 154 LRVFAWHPHTNKFAVALLDDSVRVY-----NASSTIVPSLKHRLQRNVASLAWKPLSASV 208
Query: 160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219
L+V C+ I IW + SG A L P +T+L+
Sbjct: 209 LAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLA 251
Query: 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGT 277
W P G L SAS ++ +WDV+ P+ RG GG++ L WSP G A
Sbjct: 252 WAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAV 310
Query: 278 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ 325
F +WE WT E W + SG W P+G +L G + S+ F
Sbjct: 311 FRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVG 370
Query: 326 ASKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIA 381
+K ++ A L + PD G + + WD SGERLAV KG + G +I
Sbjct: 371 GAKSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVIL 429
Query: 382 IYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440
++ R +P+ L G I+G PG P+ + +FH F +G LLSV WS+G PL F
Sbjct: 430 LFRTRNSPVFELLPCGIIQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFV 487
Query: 441 SHLLP 445
+ P
Sbjct: 488 NAQFP 492
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Plays a role in the normal development of the peripheral and central nervous system. Homo sapiens (taxid: 9606) |
| >sp|Q86HX1|HIRA_DICDI Protein HIRA OS=Dictyostelium discoideum GN=hira PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 134 KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNAASVRSGAASFLGA 192
K C + + V ++W +G + L+ G +C IW S +
Sbjct: 58 KLLCSIENAHFHSVNSVKWSKDG-KYLASGSDDKLCMIWGLSNNN--------------S 102
Query: 193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIR 251
L + W V LR I+ +SW PD +Y+A+ S++ S IW+ + + + +
Sbjct: 103 LLKNTTENWVCVATLRGH-ASDISEVSWSPDNKYIATCSFD-KSIIIWETNKFQMVSKLE 160
Query: 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWS-STSGFVTGATWDP 305
G + L W P G Y + D + +W T+ W +EP+ S + F +W P
Sbjct: 161 EHKGFVKGLTWDPLGRYLASQSEDKSLIIWRTSDWVVETIVTEPFKHSGNSFFLRPSWTP 220
Query: 306 EGRMIL 311
+G+ I+
Sbjct: 221 DGQFIV 226
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Required for the periodic repression of histone gene transcription during the cell cycle. Promotes replication-independent chromatin assembly. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica GN=Os09g0567700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI- 259
W +V LR + + L+W PD LAS S +++ IW +A G+ T + RG L
Sbjct: 115 WKVVMTLRGHTAD-VVDLNWSPDDSTLASGSLDNT-VHIWSMANGICTAVLRGHSSLVKG 172
Query: 260 LKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWSSTSG--FVTGATWDPEGRMI 310
+ W P G + + D T +W T+ W T WS + G F W P G I
Sbjct: 173 VTWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTEGHWSKSLGSTFFRRLAWSPCGHFI 230
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Histone chaperone involved in maintining knox genes silencing throughout leaf development. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O42611|HIRA_TAKRU Protein HIRA OS=Takifugu rubripes GN=hira PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT-RWTLVD 205
V + W NG S G + +W AA + G ++ G+ ++ +W V
Sbjct: 73 VNCVRWSNNGLYLASGGDDKLVMVWK-----RAALI--GPSTVFGSSNKLANVEQWRCVT 125
Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 263
LR+ G+ + +SW P +LAS S +++ IW+ + + T +R G + L W
Sbjct: 126 ILRNHTGD-VMDVSWSPHDVWLASCSVDNT-IVIWNARKFPEMVTCLRGHTGLVKGLTWD 183
Query: 264 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 315
P G Y + D + +W T W E P+S G V +W P+G+ ++ A A
Sbjct: 184 PVGKYIASQADDHSLRVWRTVDWQMEANITKPFSECGGTTHVLRLSWSPDGQYLVSAHA 242
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Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle. Takifugu rubripes (taxid: 31033) |
| >sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 147 VKVLEWRPNGGRSLSVGCKGGICIWAPS-YPGNAASVRSGAASFLGALSRGPGTRWTLVD 205
V + W NG S G I +W S Y G S G++S L + + W +
Sbjct: 73 VNCVRWSNNGAYLASGGDDKLIMVWKRSGYIG--PSTVFGSSSKLANVEQ-----WRCLS 125
Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 263
LRS +G+ + ++W P +LAS S +++ IW+ + + + +R G + L W
Sbjct: 126 ILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNALKFPEIISTLRGHSGLVKGLTWD 183
Query: 264 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 315
P G Y + D + +W T W E P+ G V +W P+G ++ A A
Sbjct: 184 PVGKYIASQADDHSIKVWRTMDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAHA 242
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Required for the periodic repression of histone gene transcription during the cell cycle (By similarity). Required for replication-independent chromatin assembly. Xenopus laevis (taxid: 8355) |
| >sp|P79987|HIRA_CHICK Protein HIRA OS=Gallus gallus GN=HIRA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT-RWTLVD 205
V + W NG S G I +W AA + G ++ G+ S+ +W V
Sbjct: 73 VNCVRWSNNGVYLASGGDDKLIMVWK-----RAAYI--GPSTVFGSSSKLTNVEQWRCVS 125
Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA---QGLGTPIRRGFGGLSI-LK 261
LRS +G+ + ++W P +LAS S +++ IW+ + L T +G GL L
Sbjct: 126 ILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNAVKFPEILAT--LKGHSGLVKGLT 181
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAF 314
W P G Y + D + +W T W E P+ G V +W P+G ++ A
Sbjct: 182 WDPVGKYIASQADDRSLKVWRTMDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAH 241
Query: 315 A 315
A
Sbjct: 242 A 242
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Cooperates with ASF1A to promote replication-independent chromatin assembly (By similarity). May regulate the transcription of a variety of genes controlling cell growth. Gallus gallus (taxid: 9031) |
| >sp|Q9LXN4|HIRA_ARATH Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260
W V LR + + L+W PD LAS S +++ IW++ G+ T + RG LS++
Sbjct: 115 WKAVMTLRGHTAD-VVDLNWSPDDSMLASGSLDNT-VHIWNMRTGMCTTVLRGH--LSLV 170
Query: 261 K---WSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWSSTSG--FVTGATWDPEGRMI 310
K W P G + + D T +W T+ W T W+ + G F W P G +
Sbjct: 171 KGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFL 230
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Histone chaperone involved in maintining knox genes silencing throughout leaf development. May be involved in heterochromatic and euchromatic gene silencing. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q32SG6|HIRA_MAIZE Protein HIRA OS=Zea mays PE=1 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Query: 120 STQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178
S + + +D +++ K + T D V + W +G R L+ G + + G
Sbjct: 41 SMESVHKDNTNNDSKQRLLATLRDHFGSVNCVRWAKHG-RYLASGSDDQVILIHERKAG- 98
Query: 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT 238
SG + F G+ W ++ R + + LSW PD LAS S +++
Sbjct: 99 -----SGTSEF-GSGEPPDAENWKVIMTWRGHTAD-VVDLSWSPDDSTLASGSLDNT-IH 150
Query: 239 IWDVAQGLGTPIRRGFGGLSI-LKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWS 292
IW++ G+ T + RG L + W P G + + D T +W T+ W T W+
Sbjct: 151 IWNMNNGICTAVLRGHTSLVKGVTWDPIGSFIASQSDDKTVMIWRTSDWSLAHKTEGHWT 210
Query: 293 STSG--FVTGATWDP 305
+ G F W P
Sbjct: 211 KSLGSTFFRRLAWSP 225
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Histone chaperone involved in maintining knox genes silencing throughout leaf development. Zea mays (taxid: 4577) |
| >sp|O15736|TIPD_DICDI Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRRGFGGLSILKWSPT 265
+NG T SW PDGRY+AS S + S IWD G + T + + WSP
Sbjct: 537 RNGLNWTKASWSPDGRYIASGSID-GSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPL 595
Query: 266 GDYFFAAKFDGTFYLWE 282
+ F +A D WE
Sbjct: 596 ANIFISADKDKNIIQWE 612
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Not known; disruption of the gene for tipD results in morphological defects. Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| 118486469 | 449 | unknown [Populus trichocarpa] | 0.997 | 0.988 | 0.775 | 0.0 | |
| 225440260 | 451 | PREDICTED: aladin-like [Vitis vinifera] | 0.995 | 0.982 | 0.771 | 0.0 | |
| 224137610 | 457 | predicted protein [Populus trichocarpa] | 0.997 | 0.971 | 0.751 | 0.0 | |
| 449516609 | 449 | PREDICTED: aladin-like [Cucumis sativus] | 0.997 | 0.988 | 0.768 | 0.0 | |
| 356570401 | 450 | PREDICTED: aladin-like [Glycine max] | 1.0 | 0.988 | 0.744 | 0.0 | |
| 30694538 | 447 | aladin-related / adracalin-related prote | 1.0 | 0.995 | 0.738 | 0.0 | |
| 297817004 | 447 | hypothetical protein ARALYDRAFT_486131 [ | 1.0 | 0.995 | 0.736 | 0.0 | |
| 356503340 | 450 | PREDICTED: aladin-like [Glycine max] | 0.995 | 0.984 | 0.736 | 0.0 | |
| 9663009 | 440 | putative protein [Arabidopsis thaliana] | 0.984 | 0.995 | 0.718 | 0.0 | |
| 449437972 | 355 | PREDICTED: LOW QUALITY PROTEIN: aladin-l | 0.791 | 0.991 | 0.818 | 1e-167 |
| >gi|118486469|gb|ABK95074.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/450 (77%), Positives = 397/450 (88%), Gaps = 6/450 (1%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
MPSFP GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+ + Q
Sbjct: 1 MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59
Query: 61 ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
ESE + R GE GL +L +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60 ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119
Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175
FISG QVIVRDYEDSEGKDAC+L++ +Q+D++ LEWRPNGG+SLSV CKGGICIWA SY
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKGGICIWAASY 179
Query: 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 235
PGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGRYLASAS ESS
Sbjct: 180 PGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYLASASCESS 239
Query: 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295
SFTIWDV+QGLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS
Sbjct: 240 SFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 299
Query: 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 355
GFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++TGS+GIEK
Sbjct: 300 GFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTMTGSEGIEK 359
Query: 356 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415
IAWDASGERLAVSYKGGDD YKGL+AIYD RRTPLIS SL+GFIRGPGDNPKP+AFSFHD
Sbjct: 360 IAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPKPIAFSFHD 419
Query: 416 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445
KFKQGPLLSVCWSSGFCCTYPLIF SH LP
Sbjct: 420 KFKQGPLLSVCWSSGFCCTYPLIFHSHSLP 449
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440260|ref|XP_002283996.1| PREDICTED: aladin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/451 (77%), Positives = 393/451 (87%), Gaps = 8/451 (1%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
M SFP+PGSVTVCEINR+LITA NLSDD AKD YGK LGMVF+PVPFQ D+L + SP+
Sbjct: 1 MRSFPQPGSVTVCEINRNLITALNLSDDGAKDAYGKQLGMVFSPVPFQWDQLLALSPE-H 59
Query: 61 ESEQRGREEGEG-------LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHI 113
+EQ + GE L + L I++ S+K HP+ V+ LPEVDLQGVSWH+HKHI
Sbjct: 60 GAEQPPQVTGESVAPRRKDLSTALQRIVNDSLKRFFHPNDVNCLPEVDLQGVSWHRHKHI 119
Query: 114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173
+AFISG QVIVRDYEDSEGK+ CILT +SQRDVK++EWRPNGG++LSV CKGGIC+WA
Sbjct: 120 LAFISGPNQVIVRDYEDSEGKEPCILTHESQRDVKLIEWRPNGGKTLSVACKGGICMWAA 179
Query: 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 233
SYPGNAA RSG A F G ++RG G RWT+VDFL+SQN EQI+ALSW P+GRYLASASYE
Sbjct: 180 SYPGNAAIARSGVAPFFGTVARGSGIRWTVVDFLQSQNDEQISALSWSPNGRYLASASYE 239
Query: 234 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293
SSSFTIWDVA+GLGTPIRRG GG+SILKWSPTGDYF +AKFDGTFYLWETNTWTSEPWSS
Sbjct: 240 SSSFTIWDVAKGLGTPIRRGLGGISILKWSPTGDYFLSAKFDGTFYLWETNTWTSEPWSS 299
Query: 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353
TSGFVTGATWDP+G M+L+AF+ S TLGS+HFASKPPSLDAHLLPVDLP+I+SLTGSQGI
Sbjct: 300 TSGFVTGATWDPDGHMVLIAFSKSSTLGSVHFASKPPSLDAHLLPVDLPEIMSLTGSQGI 359
Query: 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413
EKIAWDA+GERLA+SYKGGD++YKGLIAIYD RR PLIS SLIGFIRGPG+NPKP+AFSF
Sbjct: 360 EKIAWDATGERLALSYKGGDELYKGLIAIYDVRRNPLISASLIGFIRGPGENPKPLAFSF 419
Query: 414 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL 444
HDKFKQGPLLSVCWSSGFCCTYPLIFRSH L
Sbjct: 420 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHAL 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137610|ref|XP_002322600.1| predicted protein [Populus trichocarpa] gi|222867230|gb|EEF04361.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/458 (75%), Positives = 393/458 (85%), Gaps = 14/458 (3%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
MPSFP GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+ + Q
Sbjct: 1 MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59
Query: 61 ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
ESE + R GE GL +L +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60 ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119
Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GG 167
FISG QVIVRDYEDSEGKDAC+L++ +Q+D++ LEWRPNGG+SLSV CK GG
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKQVSKLKFLGG 179
Query: 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227
ICIWA SYPGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGRY
Sbjct: 180 ICIWAASYPGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYP 239
Query: 228 ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287
+ESSSFTIWDV+QGLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWT
Sbjct: 240 DQFKFESSSFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWT 299
Query: 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347
SEPWSSTSGFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++
Sbjct: 300 SEPWSSTSGFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTM 359
Query: 348 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 407
TGS+GIEKIAWDASGERLAVSYKGGDD YKGL+AIYD RRTPLIS SL+GFIRGPGDNPK
Sbjct: 360 TGSEGIEKIAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPK 419
Query: 408 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445
P+AFSFHDKFKQGPLLSVCWSSGFCCTYPLIF SH LP
Sbjct: 420 PIAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFHSHSLP 457
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449516609|ref|XP_004165339.1| PREDICTED: aladin-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/450 (76%), Positives = 382/450 (84%), Gaps = 6/450 (1%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
MPSFP PGSVT+CEINRDLITAD LSDDRA DTYGK+LGMVF+PVPFQSD L S +P+ +
Sbjct: 1 MPSFPPPGSVTICEINRDLITADCLSDDRANDTYGKILGMVFSPVPFQSDFLVSPTPEPK 60
Query: 61 ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
+ GE G+ ++L G I S+ LL P+ V LP LQGVSWHQHKHI+A
Sbjct: 61 NEPRNDEVNGEIIQRKGVIASLQGFIEGSVNRLLRPNDVKYLPTEYLQGVSWHQHKHIIA 120
Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175
FISG+ QV+VRDYE++EGKD CILT D QRDVKVLEWRPNGGR+LSV CKGGICIWA S+
Sbjct: 121 FISGTNQVVVRDYENAEGKDPCILTHDLQRDVKVLEWRPNGGRTLSVACKGGICIWAASF 180
Query: 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 235
PGNAASVR GA SFLG+ SRG G R+TLVDFLRS + EQI+ALSW PDGRYLASA+YESS
Sbjct: 181 PGNAASVRPGAVSFLGSFSRGSGVRYTLVDFLRSHD-EQISALSWSPDGRYLASATYESS 239
Query: 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295
SFTIWDVAQGLGTPIRRG G +S +KWSPTGDYFFAAKFDGTFYLWETN+WTSE WSSTS
Sbjct: 240 SFTIWDVAQGLGTPIRRGLGCVSTIKWSPTGDYFFAAKFDGTFYLWETNSWTSEQWSSTS 299
Query: 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 355
GFVTGA WDPEGRMILLAF+GS LGSIHFASKPPSL AHLLPVDLP+I + T SQGIEK
Sbjct: 300 GFVTGAIWDPEGRMILLAFSGSSVLGSIHFASKPPSLVAHLLPVDLPEITTSTNSQGIEK 359
Query: 356 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415
IAWDASGERLAVS+K GD + GLIA+YD +RTPLI SLIGFIRGPGDNPKPVAFSFH
Sbjct: 360 IAWDASGERLAVSFKEGDKLSNGLIAVYDVKRTPLICPSLIGFIRGPGDNPKPVAFSFHG 419
Query: 416 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445
K KQGPLLSVCWSSGFCCTYPLIFRSH++P
Sbjct: 420 KLKQGPLLSVCWSSGFCCTYPLIFRSHVVP 449
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570401|ref|XP_003553377.1| PREDICTED: aladin-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/450 (74%), Positives = 384/450 (85%), Gaps = 5/450 (1%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPF---QSDELASSSP 57
M SFP PGS+T+CE+NRDLIT D LSDDRA TYGK+LG+VF+PVPF ++D P
Sbjct: 1 MASFPPPGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHNLENDASDQEGP 60
Query: 58 DRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFI 117
E+ + + + L G++++ + L +P+ VHLLPEVDLQGVSWH +KHI+AFI
Sbjct: 61 TATETAAGESVQRKCPVALLQGLVNNYLGRLFYPNDVHLLPEVDLQGVSWHPNKHIIAFI 120
Query: 118 SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177
S TQV+VRDY++SEGKD ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SYPG
Sbjct: 121 SAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPG 180
Query: 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237
NAASVRSGAASFLG LSR G R+ LVDFLRS E ++ALSW PDGRYLASASYESSSF
Sbjct: 181 NAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALSWSPDGRYLASASYESSSF 240
Query: 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297
T+WD AQG+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTSGF
Sbjct: 241 TVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGF 300
Query: 298 VT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 355
V GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTGSQGIEK
Sbjct: 301 VKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGIEK 360
Query: 356 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415
IAWD SGERLAVS+KGGDD+Y+GLIAIYD RRTPLIS SLIGFIRGPGD PKP++FSFH
Sbjct: 361 IAWDNSGERLAVSFKGGDDMYRGLIAIYDTRRTPLISTSLIGFIRGPGDKPKPISFSFHG 420
Query: 416 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445
KFKQGPLLSVCWSSGFCCTYPL+FRSH+LP
Sbjct: 421 KFKQGPLLSVCWSSGFCCTYPLLFRSHMLP 450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30694538|ref|NP_191249.2| aladin-related / adracalin-related protein [Arabidopsis thaliana] gi|26452390|dbj|BAC43280.1| unknown protein [Arabidopsis thaliana] gi|28951013|gb|AAO63430.1| At3g56900 [Arabidopsis thaliana] gi|332646063|gb|AEE79584.1| aladin-related / adracalin-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/447 (73%), Positives = 380/447 (85%), Gaps = 2/447 (0%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S + + Q
Sbjct: 1 MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60
Query: 61 ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
E+ + E +GL +TL ++ S+K +L P V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61 ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120
Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
QV +RDYED + K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180
Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
VRSG ++ G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240
Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 298
DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW SS SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300
Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 358
TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 360
Query: 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418
DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420
Query: 419 QGPLLSVCWSSGFCCTYPLIFRSHLLP 445
QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817004|ref|XP_002876385.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata] gi|297322223|gb|EFH52644.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/447 (73%), Positives = 378/447 (84%), Gaps = 2/447 (0%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
M SFP PGSVTVCEINRDLITA NLSD+RA +TYGKVLGMVF+PV F S + + Q
Sbjct: 1 MASFPHPGSVTVCEINRDLITAQNLSDERALETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60
Query: 61 ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
E+ + E +GL +TL +S +K +L P V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61 ENGDKASVESKGLVATLQMKVSDILKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120
Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
QV +RDY+D + K+ C+LTSDSQR VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYDDKDEKEPCVLTSDSQRSVKALEWRPNGGKSLSISCRGGICIWAASYPGNMA 180
Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
VRSG ++ G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240
Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 298
DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW SS SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300
Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 358
TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTGS+GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGSEGIEKIAW 360
Query: 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418
DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420
Query: 419 QGPLLSVCWSSGFCCTYPLIFRSHLLP 445
QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503340|ref|XP_003520468.1| PREDICTED: aladin-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/452 (73%), Positives = 383/452 (84%), Gaps = 9/452 (1%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
M SFP GS+T+CE+NRDLIT D LSDDRA TYGK+LG+VF+PVPF + L + + D+
Sbjct: 1 MASFPPLGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHN--LENDASDQD 58
Query: 61 ESEQRGREEGEGL-----FSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
+ GE + + L G ++ + L +PD VHLLPEVDLQGVSWH +KHI+A
Sbjct: 59 GATTTATTAGESVRRKSPVALLQGFMNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIA 118
Query: 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175
FIS TQV+VRDY++SEGKD ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SY
Sbjct: 119 FISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASY 178
Query: 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 235
PGNAASVRSGAASFLG LSR G R+ LVDFLRS E ++AL+W PDGRYLASASYESS
Sbjct: 179 PGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESS 238
Query: 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295
SF++WD AQG+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTS
Sbjct: 239 SFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTS 298
Query: 296 GFVT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353
GFV GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTGSQGI
Sbjct: 299 GFVKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGI 358
Query: 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413
EKIAWD SGERLAVS+KGG+DIY+GLIA+YD RRTPLIS SLIGFIRGPGDNPKP++F F
Sbjct: 359 EKIAWDNSGERLAVSFKGGEDIYRGLIAVYDTRRTPLISTSLIGFIRGPGDNPKPISFLF 418
Query: 414 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445
H KFKQGPLLSVCWSSGFCCTYPL+FRSH+LP
Sbjct: 419 HGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLP 450
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9663009|emb|CAC00753.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/447 (71%), Positives = 373/447 (83%), Gaps = 9/447 (2%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S + + Q
Sbjct: 1 MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60
Query: 61 ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
E+ + E +GL +TL ++ S+K +L P V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61 ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120
Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
QV +RDYED + K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180
Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
VRSG ++ G+LSRG GTRW LVDFLR QN EQI+ALS + +SY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALS-------WSPSSYDSSSFTIW 233
Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 298
DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW SS SG V
Sbjct: 234 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 293
Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 358
TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct: 294 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 353
Query: 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418
DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 354 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 413
Query: 419 QGPLLSVCWSSGFCCTYPLIFRSHLLP 445
QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 414 QGPLLSVCWSTGFCCTYPLIFRSHVLP 440
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437972|ref|XP_004136764.1| PREDICTED: LOW QUALITY PROTEIN: aladin-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/353 (81%), Positives = 312/353 (88%), Gaps = 1/353 (0%)
Query: 93 HVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW 152
V LP LQGVSWHQHKHI+AFISG+ QV VRDYE++EGKD CILT D QRDVKVLEW
Sbjct: 4 QVKYLPTEYLQGVSWHQHKHIIAFISGTNQVXVRDYENAEGKDPCILTHDLQRDVKVLEW 63
Query: 153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG 212
RPNGGR+LSV CKGGICIWA S+PGNAASVR GA SFLG+ SRG G R+TLVDFLRS +
Sbjct: 64 RPNGGRTLSVACKGGICIWAASFPGNAASVRPGAMSFLGSFSRGSGVRYTLVDFLRSHD- 122
Query: 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA 272
EQI+ALSW PDGRYLASA+YESSSFTIWDVAQGLGTPIRRG G +S +KWSPTGDYFFAA
Sbjct: 123 EQISALSWSPDGRYLASATYESSSFTIWDVAQGLGTPIRRGLGCVSTIKWSPTGDYFFAA 182
Query: 273 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332
KFDGTFYLWETN+WTSE WSSTSGFVTGA WDPEGRMILLAF+GS LGSIHFASKPPSL
Sbjct: 183 KFDGTFYLWETNSWTSEQWSSTSGFVTGAIWDPEGRMILLAFSGSSVLGSIHFASKPPSL 242
Query: 333 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392
AHLLPVDLP+I + T SQGIEKIAWDASGERLAVS+K GD + GLIA+YD +RTPLI
Sbjct: 243 VAHLLPVDLPEITTSTNSQGIEKIAWDASGERLAVSFKEGDKLSNGLIAVYDVKRTPLIC 302
Query: 393 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445
SLIGFIRGPGDNPKPVAFSFH K KQGPLLSVCWSSGFCCTYPLIFRSH++P
Sbjct: 303 PSLIGFIRGPGDNPKPVAFSFHGKLKQGPLLSVCWSSGFCCTYPLIFRSHVVP 355
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 445 | ||||||
| TAIR|locus:2103620 | 447 | AT3G56900 [Arabidopsis thalian | 1.0 | 0.995 | 0.718 | 1.9e-179 | |
| ZFIN|ZDB-GENE-030912-4 | 499 | aaas "achalasia, adrenocortica | 0.626 | 0.559 | 0.321 | 2.7e-36 | |
| MGI|MGI:2443767 | 546 | Aaas "achalasia, adrenocortica | 0.633 | 0.516 | 0.306 | 8.8e-35 | |
| UNIPROTKB|Q9NRG9 | 546 | AAAS "Aladin" [Homo sapiens (t | 0.631 | 0.514 | 0.308 | 7.3e-33 | |
| RGD|1308701 | 544 | Aaas "achalasia, adrenocortica | 0.631 | 0.516 | 0.314 | 4.3e-32 | |
| UNIPROTKB|H9L088 | 369 | AAAS "Uncharacterized protein" | 0.635 | 0.766 | 0.285 | 1.3e-31 | |
| UNIPROTKB|F8VZ44 | 422 | AAAS "Aladin" [Homo sapiens (t | 0.631 | 0.665 | 0.308 | 6.9e-31 | |
| FB|FBgn0030122 | 466 | CG16892 [Drosophila melanogast | 0.489 | 0.467 | 0.300 | 1.1e-26 | |
| UNIPROTKB|Q0VC02 | 556 | AAAS "Uncharacterized protein" | 0.519 | 0.415 | 0.291 | 2.6e-20 | |
| UNIPROTKB|F1SFR0 | 559 | AAAS "Uncharacterized protein" | 0.608 | 0.484 | 0.286 | 5e-20 |
| TAIR|locus:2103620 AT3G56900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1742 (618.3 bits), Expect = 1.9e-179, P = 1.9e-179
Identities = 321/447 (71%), Positives = 367/447 (82%)
Query: 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDXX 60
M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S + +
Sbjct: 1 MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60
Query: 61 XXXXXXXXXXXXLFSTLHGIISHSIKXXXXXXXXXXXXEVDLQGVSWHQHKHIVAFISGS 120
L +TL ++ S+K E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61 ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120
Query: 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180
QV +RDYED + K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180
Query: 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240
VRSG ++ G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240
Query: 241 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFV 298
DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS S SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300
Query: 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 358
TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 360
Query: 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418
DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420
Query: 419 QGPLLSVCWSSGFCCTYPLIFRSHLLP 445
QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447
|
|
| ZFIN|ZDB-GENE-030912-4 aaas "achalasia, adrenocortical insufficiency, alacrimia" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 99/308 (32%), Positives = 138/308 (44%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR V L+W+P G +L+V C+ + IW + SG A L P
Sbjct: 183 QRSVCALQWKPLCGSALAVACQSCLLIWHVDPASLSTRPSSGCAQVLSHPGHSP------ 236
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKW 262
IT+++W P G L SAS ++ +WDVA P+RR G GG++ L W
Sbjct: 237 -----------ITSIAWSPTGSLLVSASPVDTAMMVWDVAAESCVPLRRVGGGGVTFLSW 285
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322
SP G AA F +WET WT E W G A W P+G +LL+ G + +
Sbjct: 286 SPDGSRLLAATPSALFRVWETRMWTCERWPCLKGSCQSACWSPDGACLLLSIQGERLIYA 345
Query: 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQG-------IEKIAWDASGERLAVSYKGGDDI 375
+ F+ A + DL + S G +G + ++WD GERLAV KG
Sbjct: 346 LSFSDLTGGPKAATVVADLSE-TSFPGPEGDLTVGGEVCSLSWDPRGERLAVLLKGDAQS 404
Query: 376 --YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433
+ +IA++ R +P L GF+ G +P FH F+ G LL+VCWS G
Sbjct: 405 TDHPSVIAVFKTRCSPAFELLPCGFVMGEA-GAEPRFMQFHPHFQHGALLTVCWSDGRIT 463
Query: 434 TYPLIFRS 441
P F S
Sbjct: 464 HVPFYFSS 471
|
|
| MGI|MGI:2443767 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 98/320 (30%), Positives = 141/320 (44%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR+V L W+P L+V C+ I IW + SG A L P
Sbjct: 193 QRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 246
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
+T+L+W P+G +L SAS + +WDV+ P+ RG GG++ L
Sbjct: 247 -----------VTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLL 294
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
WSP G A F +WE WT E W + SG W P+G +L G +
Sbjct: 295 WSPDGSKVLATTPSAVFRVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIY 354
Query: 322 SIHFASKPPSLDAHL-------LPVDLPDIVSLT--GSQGI----EKIAWDASGERLAVS 368
S+ F + + H+ + DL + T G + + + WD SGERLAV
Sbjct: 355 SLSFPERCGTGKGHVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVL 414
Query: 369 YKGGDDIYKG--LIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSV 425
KG + G +I ++ R +P+ L G I+G PG + + +FH F +G LLSV
Sbjct: 415 MKGNPQVQDGNPVILLFRTRNSPVFELLPCGIIQGEPGAQAQLI--TFHPSFNKGALLSV 472
Query: 426 CWSSGFCCTYPLIFRSHLLP 445
CWS+G PL F + P
Sbjct: 473 CWSTGRITHIPLYFVNAQFP 492
|
|
| UNIPROTKB|Q9NRG9 AAAS "Aladin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 7.3e-33, Sum P(2) = 7.3e-33
Identities = 99/321 (30%), Positives = 139/321 (43%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR+V L W+P L+V C+ I IW + SG A L P
Sbjct: 193 QRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 246
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
+T+L+W P G L SAS ++ +WDV+ P+ RG GG++ L
Sbjct: 247 -----------VTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLL 294
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
WSP G A F +WE WT E W + SG W P+G +L G +
Sbjct: 295 WSPDGSKILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIY 354
Query: 322 SIHF------------ASKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAV 367
S+ F +K ++ A L + PD G + + WD SGERLAV
Sbjct: 355 SLSFPERCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAV 413
Query: 368 SYKGGDDIYKG--LIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLS 424
KG + G +I ++ R +P+ L G I+G PG P+ + +FH F +G LLS
Sbjct: 414 LMKGKPRVQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLI--TFHPSFNKGALLS 471
Query: 425 VCWSSGFCCTYPLIFRSHLLP 445
V WS+G PL F + P
Sbjct: 472 VGWSTGRIAHIPLYFVNAQFP 492
|
|
| RGD|1308701 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 4.3e-32, P = 4.3e-32
Identities = 101/321 (31%), Positives = 141/321 (43%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR+V L W+P L+V C+ I IW + SG A L P
Sbjct: 191 QRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 244
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
+T+L+W P+G +L SAS + +WDV+ P+ RG GG++ L
Sbjct: 245 -----------VTSLAWAPNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLL 292
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
WSP G A F +WE WT E W + SG W P+G+ +L G +
Sbjct: 293 WSPDGSKVLATTPSAVFRVWEARMWTCEGWPTLSGRCQTGCWSPDGKRLLFTVLGEALIY 352
Query: 322 SIHF------------ASKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAV 367
S+ F +K ++ A L + PD G + + WD SGERLAV
Sbjct: 353 SLSFPEPCGTEKGHVGGAKSATIVADLSETTIQTPDGEERLGGEA-HAMVWDPSGERLAV 411
Query: 368 SYKGGDDIYKG--LIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLS 424
KG + G +I ++ R +P+ L G I+G PG + V SFH F +G LLS
Sbjct: 412 LMKGNPRVQDGNPVILLFRTRNSPVFELLPCGVIQGEPGAQAQLV--SFHPAFNKGALLS 469
Query: 425 VCWSSGFCCTYPLIFRSHLLP 445
VCWS+G PL F + P
Sbjct: 470 VCWSTGRITHIPLYFVNAQFP 490
|
|
| UNIPROTKB|H9L088 AAAS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 91/319 (28%), Positives = 143/319 (44%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR+V + W+P L+V C+ + +W + SG A L P
Sbjct: 44 QRNVAAVAWKPLCASILAVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHSP------ 97
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKW 262
+T+L+W P G+ L SAS ++ +WDV+ ++ G GG++ L W
Sbjct: 98 -----------VTSLAWAPSGKLLLSASPVDTAMLVWDVSTENCVQLQWFGGGGVTFLAW 146
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322
SP G AA F +WE WT E W + G W P+G +L G + S
Sbjct: 147 SPDGSKVLAATPSAVFKVWEAQMWTCEKWPTIKGRCQTGCWSPDGSRLLFTVLGESVIYS 206
Query: 323 IHFASKPPSLDAHL-------LPVDLPDIVSLT--GSQ----GIEKIAWDASGERLAVSY 369
+ F+ + + + DL + T G + ++ +AWD +GERLAV
Sbjct: 207 LSFSEYRGDMQGQVGGSKTASIVADLSETTFETPYGEERVGGAVQSMAWDPTGERLAVII 266
Query: 370 KGGDDIYKG---LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 426
+G D G ++A++ R +P+ L GF+RG + +P +FH F++G LL+VC
Sbjct: 267 RG-DPRTAGTQTVVAVFRTRNSPVFELLPCGFLRGE-QSAEPQLIAFHPCFQKGALLTVC 324
Query: 427 WSSGFCCTYPLIFRSHLLP 445
WS+G P F S +P
Sbjct: 325 WSTGTISHIPFFFLSTHVP 343
|
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| UNIPROTKB|F8VZ44 AAAS "Aladin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 99/321 (30%), Positives = 139/321 (43%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR+V L W+P L+V C+ I IW + SG A L P
Sbjct: 69 QRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 122
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
+T+L+W P G L SAS ++ +WDV+ P+ RG GG++ L
Sbjct: 123 -----------VTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLL 170
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
WSP G A F +WE WT E W + SG W P+G +L G +
Sbjct: 171 WSPDGSKILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIY 230
Query: 322 SIHF------------ASKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAV 367
S+ F +K ++ A L + PD G + + WD SGERLAV
Sbjct: 231 SLSFPERCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAV 289
Query: 368 SYKGGDDIYKG--LIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLS 424
KG + G +I ++ R +P+ L G I+G PG P+ + +FH F +G LLS
Sbjct: 290 LMKGKPRVQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLI--TFHPSFNKGALLS 347
Query: 425 VCWSSGFCCTYPLIFRSHLLP 445
V WS+G PL F + P
Sbjct: 348 VGWSTGRIAHIPLYFVNAQFP 368
|
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| FB|FBgn0030122 CG16892 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 73/243 (30%), Positives = 117/243 (48%)
Query: 205 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWS 263
+ + N IT++ W DG LA+AS S IW G+ P++R G G S+LKWS
Sbjct: 224 EIFKYPNNLPITSMQWNKDGTQLATASIGDRSIIIWQPDTGMMQPLKRLGPPG-SLLKWS 282
Query: 264 PTGDYFFAAKFDGTFYLWETNT-WTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
P D+ FAA D F +W + WT+E W G+V A W P GR +L + L
Sbjct: 283 PDNDWLFAATVDRVFRVWNCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILY 342
Query: 322 SIHFASKP---PSLDA-HLLPV-DLPDIVSLTGSQGI-----EKIAWDASGERLAVSYKG 371
+ F + S D +LP+ DL + S+ ++ + +++AWD G L V++K
Sbjct: 343 RLQFVQQSLLSSSADEKEILPIADL-NACSIDANRTLVGGPAQQLAWDPHGNYLVVTFKA 401
Query: 372 GDDI--YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS--FHDKFKQGPLLSVCW 427
+ I ++ I +D + + LS G ++P + F + D + +L++ W
Sbjct: 402 TNCIAVFRTFIQKFDLQISAAYYLS--G--ETAAEHPSFICFQPLYEDNDRS--VLTIAW 455
Query: 428 SSG 430
SSG
Sbjct: 456 SSG 458
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| UNIPROTKB|Q0VC02 AAAS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 78/268 (29%), Positives = 110/268 (41%)
Query: 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203
QR+V L W+P L+V C+ I IW + SG A L P
Sbjct: 193 QRNVAALAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP------ 246
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK 261
+T+L+W P G L SAS ++ +WDV+ P+ RG GG++ L
Sbjct: 247 -----------VTSLAWAPSGGRLLSASPVDAAILVWDVSTETCVPLPWFRG-GGVTNLL 294
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321
WSP G A F +WE WT E W + SG W P G +L G +
Sbjct: 295 WSPDGSKVLATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPSGNRLLFTVLGEPLIY 354
Query: 322 SIHF------------ASKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAV 367
S+ F +K ++ A L + PD G + + WD SGERLAV
Sbjct: 355 SLSFPERCGEGKGYVGGAKSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAV 413
Query: 368 SYKGGDDIYKG--LIAIYDARRTPLISL 393
KG + G +I ++ R +P+ L
Sbjct: 414 LMKGNPRVQNGKPVILLFRTRNSPVFEL 441
|
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| UNIPROTKB|F1SFR0 AAAS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 89/311 (28%), Positives = 129/311 (41%)
Query: 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS 161
L+ +WH H + F +R Y ++ L QR+V L W+P L+
Sbjct: 154 LRVFAWHPHTN--KFAVALLDDSIRVY-NANSTIVPSLKHRLQRNVAALAWKPLSASVLA 210
Query: 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221
V C+ I IW P + S R ++ LS PG +T+L+W
Sbjct: 211 VACQSCILIWTLD-P-TSLSTRRPSSGCAQVLSH-PGHT-------------PVTSLAWA 254
Query: 222 PDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFY 279
P G L SAS ++ +WDV+ P+ RG GG++ L WSP G A F
Sbjct: 255 PSGGRLLSASPVDAAILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFR 313
Query: 280 --LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-----------A 326
+WE WT E W + SG W P+G +L G + S+ F
Sbjct: 314 RRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGG 373
Query: 327 SKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAI 382
+K ++ A L V PD G + + WD SGERLAV KG + G +I +
Sbjct: 374 AKSATIVADLSETTVQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGNPRVQNGKPVILL 432
Query: 383 YDARRTPLISL 393
+ R +P+ L
Sbjct: 433 FRTRNSPVFEL 443
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XVI.1102.1 | SubName- Full=Putative uncharacterized protein; (457 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 445 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 3e-06
Identities = 64/363 (17%), Positives = 120/363 (33%), Gaps = 56/363 (15%)
Query: 40 MVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPE 99
+ + + + P E L + + + E
Sbjct: 6 STSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHE 65
Query: 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS 159
+ +++ ++ S + + D ++ E K L V L G S
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 160 LSVGCKGG---ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 216
+ + + +W S T L+ L + +T
Sbjct: 125 ILLASSSLDGTVKLWDLS------------------------TPGKLIRTLEGHSES-VT 159
Query: 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF- 274
+L++ PDG+ LAS S + +WD+ G G +S L +SP G A+
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219
Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGA--TWDPEGRMILLAFA-GSLTLGSIHFASKPP- 330
DGT LW+ +T S+ SG ++ P+G ++ + G++ L + +S
Sbjct: 220 DGTIRLWDLSTG-KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278
Query: 331 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390
+L H S + +A+ G+ LA G D G + ++D L
Sbjct: 279 TLSGH--------------SSSVLSVAFSPDGKLLAS---GSSD---GTVRLWDLETGKL 318
Query: 391 ISL 393
+S
Sbjct: 319 LSS 321
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFA 271
++ ++++ PDG L S+S + +WD++ G LGT G S+ +SP G +
Sbjct: 179 EVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FSPDGYLLAS 236
Query: 272 AKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMI 310
DGT +W+ T + S + VT W P+G+ +
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (108), Expect = 2e-05
Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 22/230 (9%)
Query: 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL 160
+ +++ ++ SGS+ +R ++ S GK T D V + P+G
Sbjct: 200 PVSSLAFSPDGGLL-IASGSSDGTIRLWDLSTGK-LLRSTLSGHSDSVVSSFSPDGSLLA 257
Query: 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW------------------- 201
S G I +W + SG +S + +++ P +
Sbjct: 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317
Query: 202 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK 261
L + +++LS+ PDG L S + + +WD+ G G + +
Sbjct: 318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS 377
Query: 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMI 310
+SP G + DGT LW+ +T + + VT + P+G+ +
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (106), Expect = 4e-05
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 22/201 (10%)
Query: 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK 165
S+ ++A S + + D S + S V + + P+G S
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS--VLSVAFSPDGKLLASGSSD 305
Query: 166 GGICIW---------APSYPGNAASVRS------GAASFLGALSRGPGTRWTLVDFLRSQ 210
G + +W + + G+ V S G+ G G W L +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 211 N---GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI-LKWSPTG 266
+ ++S+ PDGR ++S S + +WD++ G G L +SP G
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGS-TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424
Query: 267 DYFFAAKFDGTFYLWETNTWT 287
+ D T LW+ T
Sbjct: 425 KSLASGSSDNTIRLWDLKTSL 445
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 46/212 (21%), Positives = 80/212 (37%), Gaps = 34/212 (16%)
Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164
V++ ++A SG + V D E E + RDV +G S
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA---ASADGTYLASGSS 71
Query: 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224
I +W + +G TL ++++++ PDG
Sbjct: 72 DKTIRLW---------DLETGE------------CVRTLTGHT-----SYVSSVAFSPDG 105
Query: 225 RYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWET 283
R L+S+S + +WDV G RG ++ + +SP G + ++ DGT LW+
Sbjct: 106 RILSSSSR-DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
Query: 284 NTWTSEPWSST--SGFVTGATWDPEGRMILLA 313
T + T +G V + P+G +L +
Sbjct: 165 RTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSS 195
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFA 271
+T +++ PDG+ LA+ S + +WD+ G +R G + + S G Y +
Sbjct: 12 VTCVAFSPDGKLLATGSG-DGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 272 AKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMIL 311
D T LW+ T + + +V+ + P+GR++
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 37/182 (20%)
Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVG 163
V++ VA S + + ++ GK C+ T + +V + + P+G + LS
Sbjct: 141 VAFSPDGTFVASSSQDGTIKL--WDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSS 196
Query: 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223
G I +W + +G + LR + ++++ PD
Sbjct: 197 SDGTIKLW---------DLSTGK----------------CLGTLRGHE-NGVNSVAFSPD 230
Query: 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFDGTFYL 280
G LAS S E + +WD+ G ++ G ++ L WSP G + DGT +
Sbjct: 231 GYLLASGS-EDGTIRVWDLR--TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287
Query: 281 WE 282
W+
Sbjct: 288 WD 289
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.84 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.79 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.79 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.78 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.77 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.77 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.76 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.75 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.72 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.72 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.72 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.72 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.71 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.71 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.71 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.7 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.69 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.68 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.68 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.67 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.66 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.63 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.63 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.59 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.59 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.58 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.56 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.56 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.52 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.49 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.45 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.41 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.39 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.37 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.31 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.3 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.3 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.28 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.27 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.21 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.19 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.19 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.19 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.17 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.12 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.1 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.09 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.06 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.04 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.0 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.99 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.98 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.97 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.96 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.95 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.95 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.94 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.94 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.92 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.9 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.87 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.87 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.84 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.84 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.83 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.8 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.78 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.75 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.71 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.68 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.64 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.64 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.62 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.55 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.54 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.54 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.51 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.49 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.46 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.46 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.41 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.39 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.38 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.37 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.37 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.37 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.36 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.34 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.32 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.32 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.29 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.26 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.22 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.22 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.2 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.11 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.07 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.04 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.04 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.97 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.93 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.91 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.86 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.84 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.83 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.79 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.78 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.77 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.72 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.68 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.65 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.63 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.54 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.53 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.45 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.45 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.43 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.39 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.34 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.24 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.21 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.2 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.19 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.19 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.16 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.08 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.06 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.05 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.03 | |
| PRK10115 | 686 | protease 2; Provisional | 96.95 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.94 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.93 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.92 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.89 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.87 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.82 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.78 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.76 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.7 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.61 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.56 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.54 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.47 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.42 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.42 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.42 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.36 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.21 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.21 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 96.18 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 96.16 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.05 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.78 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 95.72 | |
| PRK10115 | 686 | protease 2; Provisional | 95.63 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.56 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.52 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.37 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.36 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.34 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.33 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 95.31 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.27 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.27 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.22 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.19 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.16 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.09 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.09 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.08 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.06 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.48 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.4 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.25 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.91 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.91 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.73 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.41 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.23 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.17 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.09 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.02 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 92.74 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.47 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.47 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.44 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.3 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.16 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 92.12 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.05 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.04 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 91.98 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.74 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.57 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 91.45 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.3 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 91.01 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 90.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.51 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.5 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 90.42 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.35 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 90.32 | |
| PLN02193 | 470 | nitrile-specifier protein | 90.31 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 90.2 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 89.98 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.75 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.42 | |
| PLN02153 | 341 | epithiospecifier protein | 89.38 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 89.36 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 89.33 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.22 | |
| PLN02153 | 341 | epithiospecifier protein | 88.27 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 87.94 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 87.7 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.63 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.58 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 87.45 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.21 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 87.11 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 86.81 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.61 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.39 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 86.11 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 86.07 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.95 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 85.94 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 85.89 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.25 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 85.15 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 84.87 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 84.67 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.37 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 84.03 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 83.53 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 83.46 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 81.6 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 81.17 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 80.03 |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=298.44 Aligned_cols=424 Identities=40% Similarity=0.689 Sum_probs=324.6
Q ss_pred CCCCCCCCceeEEeEcceeeeeccCcchhhhhhhccccceeecccCCCCCcccCCCCCcchhcccccccCcccccccccc
Q 013338 1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGI 80 (445)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 80 (445)
|-|+|+||.+++||+++|++++.+.++.+.++.|+|+++|+|.|+-|....+.....+. |.......+.+.++.++.-.
T Consensus 1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~-E~~~~~~~as~~~~a~l~~a 79 (445)
T KOG2139|consen 1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEG-ENGDKASGASKGLVATLQMA 79 (445)
T ss_pred CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCccc-ccchhhcccchHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999988766544422222 22222244455566655544
Q ss_pred ccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEE
Q 013338 81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~ 160 (445)
.+...+.+.-+.+..+..+..++.++|++.--.+|++..|..|++|+-. ......+.......|++++|-|.+..-+
T Consensus 80 ~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~ks---st~pt~Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 80 VALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKS---STCPTKLKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccC---CCCCceecchhhcceeEEEeccCCccee
Confidence 4445666667777788888899999999987778889999999999854 2444555555677899999999999999
Q ss_pred EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 161 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
+.++.+.|++|..+...+......+. +. .....++......|+++.|++||..+++++.++..|.||
T Consensus 157 avgCr~gIciW~~s~tln~~r~~~~~----------s~---~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iW 223 (445)
T KOG2139|consen 157 AVGCRAGICIWSDSRTLNANRNIRMM----------ST---HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIW 223 (445)
T ss_pred eeeecceeEEEEcCcccccccccccc----------cc---cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEE
Confidence 99999999999987444332221110 00 011122222226899999999999999999877799999
Q ss_pred EccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEe-CCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 241 DVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 241 d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
|..++..+++. ...+.+.-+.|||||.+|++++-|+..++|+ .++....+..-..+.|...+|+|+|++|+.++.++.
T Consensus 224 dpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 224 DPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc
Confidence 99999988877 4568899999999999999999999999994 445555555555669999999999999999999989
Q ss_pred eEEEEEeccCCCCcc------ccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCC--cccceEEEEEEcc
Q 013338 319 TLGSIHFASKPPSLD------AHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGD--DIYKGLIAIYDAR 386 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~--d~~d~~i~vwd~~ 386 (445)
.++.+.+........ ..+...+..++....+.. .+.+++|+|.|.+||+...+.+ ..+...|.+||.+
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 999998866543332 333344445554445522 7899999999999999987755 2233567889998
Q ss_pred CCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeeccCCC
Q 013338 387 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 445 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~~~~ 445 (445)
....+...+++.+.+. ....+.|+|-- ..+++|+|+|+.|+++.|+|++.-+-+|
T Consensus 384 ~sp~vels~cg~i~ge--~P~~IsF~pl~--n~g~lLsiaWsTGriq~ypl~f~~~~~p 438 (445)
T KOG2139|consen 384 KSPPVELSYCGMIGGE--YPAYISFGPLK--NEGRLLSIAWSTGRIQRYPLTFQCFRDP 438 (445)
T ss_pred ccCceEEEecccccCC--CCceEEeeecc--cCCcEEEEEeccCceEeeeeEEEeeccc
Confidence 8777766666666543 36788998874 6899999999999999999999887665
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=296.94 Aligned_cols=289 Identities=20% Similarity=0.306 Sum_probs=239.8
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
++.+|.|++|+|+|..||+|+.|.++++||+++.+. ..+. .+|...|.+++|+|||+.|++++.||.|++||..+++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp--~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP--LFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc--ceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 345799999999999999999999999999976443 3333 6899999999999999999999999999999988777
Q ss_pred CccccccccccccccccCC--------------C-CCc---eE-----EEEeecccCCCceeEEEECCCCCeEEEEEecC
Q 013338 178 NAASVRSGAASFLGALSRG--------------P-GTR---WT-----LVDFLRSQNGEQITALSWGPDGRYLASASYES 234 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~--------------~-~~~---~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~ 234 (445)
..-....++...+.++++. + ++. |. ++..+.+|. .+|+|+.|--+ .+|++++.|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrwGG~-gliySgS~D- 267 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRWGGE-GLIYSGSQD- 267 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEEcCC-ceEEecCCC-
Confidence 6655555555444443332 1 222 22 566788997 89999999755 489999999
Q ss_pred CeEEEEEccCCCce-eeecCCCCeeEEEEc-----------CCCC-------------------------EEEEEecCCe
Q 013338 235 SSFTIWDVAQGLGT-PIRRGFGGLSILKWS-----------PTGD-------------------------YFFAAKFDGT 277 (445)
Q Consensus 235 g~v~vwd~~~~~~~-~~~~~~~~v~~~~~s-----------p~g~-------------------------~l~~~~~dg~ 277 (445)
++|++|+...|... .+.+|...|+.++.+ |.++ .|++|+.|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 69999999988764 466788888888876 3343 4999999999
Q ss_pred EEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccc
Q 013338 278 FYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE 354 (445)
Q Consensus 278 v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 354 (445)
+.+|+....+. .++.+|..-|+.+.||||+++|+++ ..+..+++|+.. +++-+.++.+|- .|+
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa----SFDkSVkLW~g~----------tGk~lasfRGHv~~VY 413 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA----SFDKSVKLWDGR----------TGKFLASFRGHVAAVY 413 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEe----ecccceeeeeCC----------CcchhhhhhhccceeE
Confidence 99999876553 5778999999999999999999987 557788888765 778889999999 999
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.++|+.|.++|++||.| .++++|++++.++. ..+.||.+.|.++.|+|||+.
T Consensus 414 qvawsaDsRLlVS~SkD------sTLKvw~V~tkKl~-----~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 414 QVAWSADSRLLVSGSKD------STLKVWDVRTKKLK-----QDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred EEEeccCccEEEEcCCC------ceEEEEEeeeeeec-----ccCCCCCceEEEEEecCCCce
Confidence 99999999999999998 99999999987765 478899999999999999985
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=286.41 Aligned_cols=281 Identities=13% Similarity=0.192 Sum_probs=235.1
Q ss_pred CCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEc
Q 013338 95 HLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWA 172 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~ 172 (445)
++..+.+|..+.||+|++.||||+.+|.++||+.. +...++++ .+|...|.++.|+|. +..+++++.||++++|+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~--~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP--QCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecC--CcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 34445689999999999999999999999999985 45555555 689999999999997 45789999999999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIR 251 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~ 251 (445)
++... .+..+.+|. .+|..++|+|+|++|++++.|. +-++||++++... ...
T Consensus 248 ~~~e~-------------------------~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 248 LSQET-------------------------PLQDLEGHL-ARVSRVAFHPSGKFLGTASFDS-TWRLWDLETKSELLLQE 300 (459)
T ss_pred cCCCc-------------------------chhhhhcch-hhheeeeecCCCceeeeccccc-chhhcccccchhhHhhc
Confidence 98332 344477786 8999999999999999999995 9999999998764 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
+|...|.+++|+|||..+++|+.|..-+|||++++.+ ..+.+|...|.+++|+|+|..|++|+ .|+...+|++.
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR---- 375 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLR---- 375 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeec----
Confidence 7889999999999999999999999999999999998 56779999999999999999999763 33444444443
Q ss_pred CccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
...++.++.+|. -|+.|.|+| .|.+|++++.| ++++||...+..+ ++.+.||.+.|.+
T Consensus 376 ---------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD------~t~kiWs~~~~~~-----~ksLaGHe~kV~s 435 (459)
T KOG0272|consen 376 ---------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD------NTVKIWSTRTWSP-----LKSLAGHEGKVIS 435 (459)
T ss_pred ---------ccccceecccccchhhheEecccCCeEEEEcccC------cceeeecCCCccc-----chhhcCCccceEE
Confidence 334477888999 899999999 78999999988 9999999997554 4689999999999
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++++||+++ +++.+| |..+.+|
T Consensus 436 ~Dis~d~~~----i~t~s~-DRT~KLW 457 (459)
T KOG0272|consen 436 LDISPDSQA----IATSSF-DRTIKLW 457 (459)
T ss_pred EEeccCCce----EEEecc-Cceeeec
Confidence 999999987 455554 4455443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=264.32 Aligned_cols=286 Identities=19% Similarity=0.290 Sum_probs=230.0
Q ss_pred cccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 74 FSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 74 ~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
...+.||.+.+++..|.|....+..+. .|.|++|+|||+.||+|+.||+|++||..
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 366789999999999999766666542 39999999999999999999999999984
Q ss_pred CCCCcceeEEecCCCCCeeEEEECc-----CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCC-----
Q 013338 130 DSEGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT----- 199 (445)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~l~~sp-----d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 199 (445)
+|+.+...+.+|...|++|+|.| .+++|++++.||.++|||+..+. .....+++..++..+.++..+
T Consensus 188 --tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 188 --TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEGLIYSG 264 (480)
T ss_pred --CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCceEEec
Confidence 46666666679999999999964 56778888889999999998433 334445666666665554322
Q ss_pred ----ceE--------EEEeecccCCCceeEEEEC-----------CCCC-------------------------eEEEEE
Q 013338 200 ----RWT--------LVDFLRSQNGEQITALSWG-----------PDGR-------------------------YLASAS 231 (445)
Q Consensus 200 ----~~~--------~~~~~~~~~~~~v~~~~~s-----------p~~~-------------------------~l~~~~ 231 (445)
..+ +.+.+++|. ..|+.++.| |.++ .+++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHa-hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHA-HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccc-hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 222 345677885 788888776 3333 499999
Q ss_pred ecCCeEEEEEccCCC--ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC
Q 013338 232 YESSSFTIWDVAQGL--GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 232 ~d~g~v~vwd~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~ 308 (445)
.| +++.+|+....+ ..+..+|..-|+.+.||||++++++++-|..|++||.++++. ..+.+|-..|..++|+.|.+
T Consensus 344 Dd-~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 344 DD-FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CC-ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 88 699999977544 246778999999999999999999999999999999999997 67778999999999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+|+++ +.|.++..|++. +.+....+.+|. .|.++.|+|||+.+++|+.| ..+++|.
T Consensus 423 LlVS~-SkDsTLKvw~V~-------------tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd------kv~~lw~ 479 (480)
T KOG0271|consen 423 LLVSG-SKDSTLKVWDVR-------------TKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD------KVLRLWR 479 (480)
T ss_pred EEEEc-CCCceEEEEEee-------------eeeecccCCCCCceEEEEEecCCCceeecCCCc------eEEEeec
Confidence 88855 555666666654 445566788999 99999999999999999888 8999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=246.58 Aligned_cols=295 Identities=16% Similarity=0.231 Sum_probs=232.9
Q ss_pred ccccccccccccccccccccCCCcCCcCcCCeeEEEEccC-CCEEEEEECCCeEEEEEccCCC---CcceeEEecCCCCC
Q 013338 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSE---GKDACILTSDSQRD 146 (445)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~---~~~~~~~~~~~~~~ 146 (445)
..+..+|+||.+. |..++..+. -..+++++.|.++.+|++...+ |..++.+ .+|...
T Consensus 5 l~l~~tl~gh~d~------------------Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~ 65 (315)
T KOG0279|consen 5 LVLRGTLEGHTDW------------------VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHF 65 (315)
T ss_pred heeeeeecCCCce------------------EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceE
Confidence 3456677788544 888888886 4678889999999999987543 3345555 589999
Q ss_pred eeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe
Q 013338 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 226 (445)
|..+..++||++.++++.|+.+++||+..+ ...+.+.+|. ..|.+++|++|++.
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------------------~~t~~f~GH~-~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATG-------------------------ESTRRFVGHT-KDVLSVAFSTDNRQ 119 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCC-------------------------cEEEEEEecC-CceEEEEecCCCce
Confidence 999999999999999999999999999833 2345578886 89999999999999
Q ss_pred EEEEEecCCeEEEEEccCCCceeeecC--CCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEE
Q 013338 227 LASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGA 301 (445)
Q Consensus 227 l~~~~~d~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~ 301 (445)
|++|+.|+ +|++|+...+....+... ...|.|+.|+|+ ..+|++++.|++|++||+++.+. ..+.+|.+.++.+
T Consensus 120 ivSGSrDk-Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 120 IVSGSRDK-TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred eecCCCcc-eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 99999995 999999987766555544 688999999998 78899999999999999999888 5677999999999
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
++||||...+++ ++++...+|+.. ..+.+..+.....|.+++|+|+.-+|+.+.. ..|+
T Consensus 199 ~vSpDGslcasG----gkdg~~~LwdL~----------~~k~lysl~a~~~v~sl~fspnrywL~~at~-------~sIk 257 (315)
T KOG0279|consen 199 TVSPDGSLCASG----GKDGEAMLWDLN----------EGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-------TSIK 257 (315)
T ss_pred EECCCCCEEecC----CCCceEEEEEcc----------CCceeEeccCCCeEeeEEecCCceeEeeccC-------CceE
Confidence 999999998875 344555555543 3444555555558999999999888776643 5799
Q ss_pred EEEccCCCeeeeeeeeeeeCC-----CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 382 IYDARRTPLISLSLIGFIRGP-----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~-----~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|||++++..+..-.+ ...+. .-...+++||+||+ .|-.||.+|.|.++.+.
T Consensus 258 Iwdl~~~~~v~~l~~-d~~g~s~~~~~~~clslaws~dG~-----tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKL-DGIGPSSKAGDPICLSLAWSADGQ-----TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccc-cccccccccCCcEEEEEEEcCCCc-----EEEeeecCCcEEEEEee
Confidence 999998776532111 12222 22246789999987 58899999999998875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=240.60 Aligned_cols=277 Identities=14% Similarity=0.169 Sum_probs=228.0
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
-+||+++.|.+|++|.. .+|.+..++. .....|+.|...|| +..++++....|++||+++...
T Consensus 11 viLvsA~YDhTIRfWqa--~tG~C~rTiq-h~dsqVNrLeiTpd-k~~LAaa~~qhvRlyD~~S~np------------- 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQA--LTGICSRTIQ-HPDSQVNRLEITPD-KKDLAAAGNQHVRLYDLNSNNP------------- 73 (311)
T ss_pred eEEEeccCcceeeeeeh--hcCeEEEEEe-cCccceeeEEEcCC-cchhhhccCCeeEEEEccCCCC-------------
Confidence 47899999999999998 4688888775 35668999999999 5666677788999999994332
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA 271 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 271 (445)
..+.++.+|. ..|+++.|..+|+++++|+.| |+++|||++...+.+...+...|+++..+|+...|++
T Consensus 74 ----------~Pv~t~e~h~-kNVtaVgF~~dgrWMyTgseD-gt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis 141 (311)
T KOG0315|consen 74 ----------NPVATFEGHT-KNVTAVGFQCDGRWMYTGSED-GTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELIS 141 (311)
T ss_pred ----------CceeEEeccC-CceEEEEEeecCeEEEecCCC-ceEEEEeccCcccchhccCCCCcceEEecCCcceEEe
Confidence 1355678886 799999999999999999999 8999999999888888999999999999999999999
Q ss_pred EecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 272 AKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 272 ~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
|..+|.|++||+....+ +.+......|.++...|||.+++++ ...+.-+.|++-.. .......++..++.
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~~-------~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLNH-------QTASELEPVHKFQA 213 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccCC-------CccccceEhhheec
Confidence 99999999999998866 3344556789999999999999855 44466677776432 11113455677888
Q ss_pred CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 350 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 350 ~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
|. .+..+.+|||+++||++|.| .+++||++++. ......+.+|...+++++||-||+| |.-+-+
T Consensus 214 h~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~~~----~kle~~l~gh~rWvWdc~FS~dg~Y-----lvTass 278 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSD------KTVKIWNTDDF----FKLELVLTGHQRWVWDCAFSADGEY-----LVTASS 278 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCC------ceEEEEecCCc----eeeEEEeecCCceEEeeeeccCccE-----EEecCC
Confidence 88 79999999999999999998 99999999975 1223467899999999999999997 666778
Q ss_pred CeeeEeeeeeee
Q 013338 429 SGFCCTYPLIFR 440 (445)
Q Consensus 429 ~G~v~~~~~~~~ 440 (445)
++.+..|++...
T Consensus 279 d~~~rlW~~~~~ 290 (311)
T KOG0315|consen 279 DHTARLWDLSAG 290 (311)
T ss_pred CCceeecccccC
Confidence 888888887543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=242.84 Aligned_cols=278 Identities=16% Similarity=0.241 Sum_probs=224.7
Q ss_pred cccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE 151 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~ 151 (445)
...++|+||.+ .|.++.|++|.++|++++.||.+.|||.-+ ..+...+.. ....|..++
T Consensus 46 ~~rr~LkGH~~------------------Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T--tnK~haipl-~s~WVMtCA 104 (343)
T KOG0286|consen 46 RTRRTLKGHLN------------------KIYAMDWSTDSRRIVSASQDGKLIVWDSFT--TNKVHAIPL-PSSWVMTCA 104 (343)
T ss_pred eeEEEeccccc------------------ceeeeEecCCcCeEEeeccCCeEEEEEccc--ccceeEEec-CceeEEEEE
Confidence 34477888854 489999999999999999999999999854 333343332 467899999
Q ss_pred ECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE
Q 013338 152 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 231 (445)
Q Consensus 152 ~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 231 (445)
|+|.|+.++.+|.|+...||++....... .....+.+.+|. +.+.++.|-+| ..|++++
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g-------------------~~~v~r~l~gHt-gylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEG-------------------NVRVSRELAGHT-GYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccc-------------------cceeeeeecCcc-ceeEEEEEcCC-CceEecC
Confidence 99998888888889999999998442211 123456688896 89999999875 5688888
Q ss_pred ecCCeEEEEEccCCCcee-eecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC
Q 013338 232 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 232 ~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~ 308 (445)
.| .+..+||+++++... +.+|.+.|.++.++| +++.+++|+-|+..++||++.+.+ +.+.+|...|++++|.|+|.
T Consensus 164 GD-~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 164 GD-MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred CC-ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC
Confidence 89 599999999998755 567899999999999 899999999999999999999987 77889999999999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
-++++. ++...+.+++. ....+..+.... +|++++||..|++|++|..| .++.+||.
T Consensus 243 afatGS-DD~tcRlyDlR-------------aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d------~~c~vWDt 302 (343)
T KOG0286|consen 243 AFATGS-DDATCRLYDLR-------------ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD------FTCNVWDT 302 (343)
T ss_pred eeeecC-CCceeEEEeec-------------CCcEEeeeccCcccCCceeEEEcccccEEEeeecC------CceeEeec
Confidence 998764 33444444432 233344444333 89999999999999999877 89999998
Q ss_pred cCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 386 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
-.++.. ..+.||...|+++..+|||-.
T Consensus 303 lk~e~v-----g~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 303 LKGERV-----GVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred cccceE-----EEeeccCCeeEEEEECCCCcE
Confidence 776654 578899999999999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=256.97 Aligned_cols=276 Identities=19% Similarity=0.335 Sum_probs=226.2
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|++++|+.+|.+||+|+.||.++||+. +|..+.++ ..|.++|.+|.|+.+|.+|++++-|+++.+||..++.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~---~G~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~--- 309 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNK---DGNLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT--- 309 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEec---Cchhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce---
Confidence 4999999999999999999999999996 46666655 4699999999999999999999999999999987332
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSI 259 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~ 259 (445)
....+.-|. .+...+.|-.+ ..+++++.| |.|+|+.+....+ ..+.+|++.|.+
T Consensus 310 ----------------------~~q~f~~~s-~~~lDVdW~~~-~~F~ts~td-~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 310 ----------------------VKQQFEFHS-APALDVDWQSN-DEFATSSTD-GCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred ----------------------EEEeeeecc-CCccceEEecC-ceEeecCCC-ceEEEEEecCCCcceeeecccCceEE
Confidence 222233342 44467788544 568888889 7999999987665 456779999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC---------eEEEEEcCCceEEEEEeccCC
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR---------MILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~---------~l~~~~~~~~~~~~~~~~~~~ 329 (445)
+.|+|.|..|++++.|++++||.+..... ..+..|...|..+.|+|+|. .++++ .. +..+++|+..
T Consensus 365 lk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sa-s~---dstV~lwdv~ 440 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASA-SF---DSTVKLWDVE 440 (524)
T ss_pred EEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEe-ec---CCeEEEEEcc
Confidence 99999999999999999999999776655 67889999999999999763 34433 33 3445555433
Q ss_pred CCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
.+.++..+..|. +|++++|+|+|+|+|+|+.| |.|.+|+++++++++ .+.+ .+.|..
T Consensus 441 ----------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d------g~V~iws~~~~~l~~-----s~~~-~~~Ife 498 (524)
T KOG0273|consen 441 ----------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD------GCVHIWSTKTGKLVK-----SYQG-TGGIFE 498 (524)
T ss_pred ----------CCceeEeeccCCCceEEEEecCCCcEEEecCCC------CeeEeccccchheeE-----eecC-CCeEEE
Confidence 667788898999 99999999999999999998 999999999988873 4443 556899
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++|+.+|.+ ++++.++|-+++.+|++
T Consensus 499 l~Wn~~G~k-----l~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 499 LCWNAAGDK-----LGACASDGSVCVLDLRK 524 (524)
T ss_pred EEEcCCCCE-----EEEEecCCCceEEEecC
Confidence 999998864 89999999999999873
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=264.08 Aligned_cols=235 Identities=15% Similarity=0.232 Sum_probs=203.8
Q ss_pred CCeeEEEEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.++.|+|. +..||+|+.||++++|+++. ...+..+ .+|...|..++|+|+|++|.+++.|.+-++||+.++.
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--ETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS 294 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCC--Ccchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence 46999999997 67999999999999999864 2344444 5799999999999999999999999999999999554
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGG 256 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~ 256 (445)
.... .+||. ..|.+++|+|||.++++|+.|. .-+|||++++.++.+ .+|...
T Consensus 295 ElL~-------------------------QEGHs-~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 295 ELLL-------------------------QEGHS-KGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred hhHh-------------------------hcccc-cccceeEecCCCceeeccCccc-hhheeecccCcEEEEecccccc
Confidence 4322 45675 8999999999999999999995 999999999998654 468899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
|.+|+|+|+|..|++|+.|++++|||++..+. ..+..|.+-|+.++|+| .|.+|+++ +.+..+++|...
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta----syD~t~kiWs~~----- 418 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA----SYDNTVKIWSTR----- 418 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc----ccCcceeeecCC-----
Confidence 99999999999999999999999999998776 66779999999999999 56667665 445677777654
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++.+++.+.||. .|.++++++|++++++++.| .++++|.
T Consensus 419 -----~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D------RT~KLW~ 458 (459)
T KOG0272|consen 419 -----TWSPLKSLAGHEGKVISLDISPDSQAIATSSFD------RTIKLWR 458 (459)
T ss_pred -----CcccchhhcCCccceEEEEeccCCceEEEeccC------ceeeecc
Confidence 778899999999 89999999999999999988 9999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=237.45 Aligned_cols=292 Identities=13% Similarity=0.209 Sum_probs=230.5
Q ss_pred ccccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEE
Q 013338 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVL 150 (445)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l 150 (445)
..+.+.+.||.++ |+.+.|+|+|.+||+|+.|..|.+|++.. +.+....+ .+|.++|..+
T Consensus 37 ~ap~m~l~gh~ge------------------I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-dceN~~~l-kgHsgAVM~l 96 (338)
T KOG0265|consen 37 QAPIMLLPGHKGE------------------IYTIKFHPDGSCFASGGSDRAIVLWNVYG-DCENFWVL-KGHSGAVMEL 96 (338)
T ss_pred cchhhhcCCCcce------------------EEEEEECCCCCeEeecCCcceEEEEeccc-cccceeee-ccccceeEee
Confidence 4556777888655 88999999999999999999999999752 33333333 5899999999
Q ss_pred EECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE
Q 013338 151 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 230 (445)
Q Consensus 151 ~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 230 (445)
.|.+|++.+++++.|.+++.||+++++ +.+..++|. .-|+++.-+.-|..++..
T Consensus 97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~-------------------------~~rk~k~h~-~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 97 HGMRDGSHILSCGTDKTVRGWDAETGK-------------------------RIRKHKGHT-SFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred eeccCCCEEEEecCCceEEEEecccce-------------------------eeehhcccc-ceeeecCccccCCeEEEe
Confidence 999999999999999999999999443 444566775 678887755555555544
Q ss_pred EecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCe
Q 013338 231 SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 231 ~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~ 309 (445)
+.|+|++++||+++....+....+-+++++.|..++..+.+|+-|+.|++||++.+.. ..+.+|...|+.+..+|+|.+
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred cCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence 4444899999999998888888889999999999999999999999999999998887 678899999999999999999
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+.+- +.+. .+++|+.++-. ...+++..+.+|. ....++|+|+++.+.+++.| ..+++||
T Consensus 231 llsn-sMd~---tvrvwd~rp~~------p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d------r~vyvwd 294 (338)
T KOG0265|consen 231 LLSN-SMDN---TVRVWDVRPFA------PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD------RFVYVWD 294 (338)
T ss_pred cccc-cccc---eEEEEEecccC------CCCceEEEeecchhhhhhhcceeeccCCCCcccccccc------ceEEEee
Confidence 9843 3334 44444433211 1344566666654 46778899999999999998 8999999
Q ss_pred ccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEe
Q 013338 385 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
.....++ -.+.||.+.|++++|+|...+ +..|-++-+|.+
T Consensus 295 ~~~r~~l-----yklpGh~gsvn~~~Fhp~e~i-----ils~~sdk~i~l 334 (338)
T KOG0265|consen 295 TTSRRIL-----YKLPGHYGSVNEVDFHPTEPI-----ILSCSSDKTIYL 334 (338)
T ss_pred cccccEE-----EEcCCcceeEEEeeecCCCcE-----EEEeccCceeEe
Confidence 9875544 378899999999999998664 444446666553
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=255.95 Aligned_cols=277 Identities=15% Similarity=0.255 Sum_probs=226.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..+.|.|+|+.|++|+..|...+|+.. .-....+...|+.+|+++.|++++..++++..+|.|++|+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~---~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--- 170 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT---SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--- 170 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCc---eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---
Confidence 479999999999999999999999999963 22223344689999999999999988888888999999998711
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~ 258 (445)
.++.++.|+...|++++|+|+...+++++.| |+|+|||....+. ..+.+|.-.|.
T Consensus 171 -----------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdD-g~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 171 -----------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD-GTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred -----------------------hhHHhhHhhhhhhheeccCCCCceeEEecCC-CeEEEEeccCCchhheeccCCCCcc
Confidence 2334566666899999999999999999999 7999999987765 44567888999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|+|....|++++.|..|++||.+++.+ ..+..|...|..+.|+|++++|++++ ++..+++.+.+
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR-------- 294 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIR-------- 294 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc----CCceEEEEehh--------
Confidence 999999999999999999999999999998 67889999999999999999999763 33444444332
Q ss_pred CccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee-eCCCCCCCceeEeec
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI-RGPGDNPKPVAFSFH 414 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~v~~spd 414 (445)
..+++.++.+|. .+++++|+|-. .+|.+|+.| |.|..|.+...+.+ ..+ .+|...|++++|+|=
T Consensus 295 --~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D------gsvvh~~v~~~~p~-----~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 295 --TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD------GSVVHWVVGLEEPL-----GEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred --HhHHHHHhhcchhhheeeccccccccceeeccCC------CceEEEeccccccc-----cCCCcccccceeeeecccc
Confidence 467788999999 89999999965 566666666 99999999843322 233 379999999999998
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|. +|+-|..+-.+.||.
T Consensus 362 Gh-----il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 362 GH-----ILATGSNDRTVRFWT 378 (464)
T ss_pred ce-----eEeecCCCcceeeec
Confidence 76 577787787777764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=248.99 Aligned_cols=304 Identities=17% Similarity=0.219 Sum_probs=225.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|+|+.|+|||.++|+++.||.+.|||= .+++....+. .+|.+.|++|+|+||+.++++++.|.+++|||+......
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDG--ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDG--KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcC--CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 999999999999999999999999996 4576666663 279999999999999999999999999999999976655
Q ss_pred ccccccccccc---cc---------------ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 180 ASVRSGAASFL---GA---------------LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 180 ~~~~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
.++..+....+ +. +..-+.+.....+.+.+|. ..|+++..+|++++|++|+.| |.|.-|+
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyD-G~I~~W~ 348 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYD-GHINSWD 348 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccC-ceEEEEe
Confidence 55443322111 10 1111111112566788996 899999999999999999999 8999999
Q ss_pred ccCCCc-------------------------------------------------------------------------e
Q 013338 242 VAQGLG-------------------------------------------------------------------------T 248 (445)
Q Consensus 242 ~~~~~~-------------------------------------------------------------------------~ 248 (445)
..++.. .
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 876500 0
Q ss_pred eeec-C--------CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 249 PIRR-G--------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 249 ~~~~-~--------~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+.. + .-...+++++|+++.+++|+.|+.|+||.+..... ..+..|.+.|++++||||+.+|+++ +.
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~-Da 507 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG-DA 507 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe-cc
Confidence 0000 0 01346789999999999999999999999988664 3566899999999999999999965 33
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
...+-.+.+.+. ......+.-|. .|.+++|+|+.+++|+||.| ..|.||+++.....
T Consensus 508 ~rkvv~yd~~s~------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~kP~~~---- 565 (603)
T KOG0318|consen 508 SRKVVLYDVASR------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKKPAKH---- 565 (603)
T ss_pred CCcEEEEEcccC------------ceecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccChhhh----
Confidence 333444443221 11233455577 89999999999999999998 99999999853221
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+....+|...|+.+.|-.+.. +++.| .+-.|.+|.+.
T Consensus 566 i~iknAH~~gVn~v~wlde~t-----vvSsG-~Da~iK~W~v~ 602 (603)
T KOG0318|consen 566 IIIKNAHLGGVNSVAWLDEST-----VVSSG-QDANIKVWNVT 602 (603)
T ss_pred eEeccccccCceeEEEecCce-----EEecc-CcceeEEeccc
Confidence 334457988899999965533 34333 56777777654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=231.78 Aligned_cols=245 Identities=16% Similarity=0.229 Sum_probs=194.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
++.|..++.++||++.++++.|+++++||+.. ++..+.+ .+|...|.+++|++|.+++++++.|.+|++|++...
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~--g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-- 137 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLAT--GESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-- 137 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecC--CcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc--
Confidence 35599999999999999999999999999964 5554544 689999999999999999999999999999998721
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccC-CCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCce-eeecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGT-PIRRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~ 254 (445)
+..++..+. .+.|.|+.|+|+ ...|++++.| ++|++||+++-+.. .+.+|.
T Consensus 138 ------------------------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D-ktvKvWnl~~~~l~~~~~gh~ 192 (315)
T KOG0279|consen 138 ------------------------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD-KTVKVWNLRNCQLRTTFIGHS 192 (315)
T ss_pred ------------------------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC-ceEEEEccCCcchhhcccccc
Confidence 222232221 478999999997 6789999999 59999999988764 456788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+.++.+++||||..+++|+.||.+.+||++.++......+...|.+++|+|+.-+|+.+.+.. +.+|++.... ..
T Consensus 193 ~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~---~v 267 (315)
T KOG0279|consen 193 GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKA---VV 267 (315)
T ss_pred ccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccchh---hh
Confidence 999999999999999999999999999999999877778899999999999998888765533 4444443221 11
Q ss_pred cccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 335 HLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 335 ~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
. .+..+.+.. .+... ...+++|++||+.|+++..| +.|++|.+.
T Consensus 268 ~--~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td------~~irv~qv~ 313 (315)
T KOG0279|consen 268 E--ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD------NVIRVWQVA 313 (315)
T ss_pred h--hccccccccccccCCcEEEEEEEcCCCcEEEeeecC------CcEEEEEee
Confidence 1 111111111 11222 46789999999999999988 999999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=227.48 Aligned_cols=282 Identities=17% Similarity=0.320 Sum_probs=222.0
Q ss_pred CeeEEEEccC-CCEEEEEECCCeEEEEEccCC-CCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS-EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
.|..++|+|- |..||+++.|+.|+||+.... +-.+...+..+|...|++++|+|.|++|++++.|.++.||.-.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~---- 91 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE---- 91 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC----
Confidence 5999999998 899999999999999998631 2223334445899999999999999988888999999999866
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~ 254 (445)
++.|.++..+++|. ..|.+++||++|++||+++.|+ .|.||.+..+.. ..+..|.
T Consensus 92 -------------------~~efecv~~lEGHE-nEVK~Vaws~sG~~LATCSRDK-SVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 92 -------------------DGEFECVATLEGHE-NEVKCVAWSASGNYLATCSRDK-SVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred -------------------CCceeEEeeeeccc-cceeEEEEcCCCCEEEEeeCCC-eEEEEEecCCCcEEEEeeecccc
Confidence 44678999999996 8999999999999999999995 999999985543 2356789
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC---c-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT---S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
..|..+.|+|....|++++.|++|++|.-.... + .++.+|...|.+++|++.|..|+++ +++..+.+|+...
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~~~~--- 226 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC-SDDGTVSIWRLYT--- 226 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe-cCCcceEeeeecc---
Confidence 999999999999999999999999999877322 2 6788999999999999999998865 4555555555321
Q ss_pred CccccccCcccccccccc-CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-eeeeeee-eeeCCCCCC
Q 013338 331 SLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIG-FIRGPGDNP 406 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~v 406 (445)
.+. .|. .++.++|. ...||+++.| +.|+||....... .....+. .-..|...|
T Consensus 227 ---------------~~~~~~sr~~Y~v~W~--~~~IaS~ggD------~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 227 ---------------DLSGMHSRALYDVPWD--NGVIASGGGD------DAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred ---------------CcchhcccceEeeeec--ccceEeccCC------CEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 111 233 68999998 4578888777 8999998764311 1112222 234688999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++|+|.|.++ ..|+.|-++|.|.++.+.
T Consensus 284 NsV~w~p~~~----~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVS----NRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCC----CceeecCCCceEEEEEec
Confidence 9999999432 246677789999999874
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=256.02 Aligned_cols=281 Identities=13% Similarity=0.210 Sum_probs=226.9
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|+++.|.| .+.+|++++.|+.|+||++.. ++.+++++ .+|..+|.+++|+++|..+++++.|+.+++||++++..
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccccceE
Confidence 3588999999 889999999999999999975 56666666 58999999999999999999999999999999995544
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCceee-ecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI-RRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~ 256 (445)
...+.. +..++|+.|+|++ +.+++|+.| +.|+.||+++++..+. ..|-+.
T Consensus 293 ~~~f~~---------------------------~~~~~cvkf~pd~~n~fl~G~sd-~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 293 LSRFHL---------------------------DKVPTCVKFHPDNQNIFLVGGSD-KKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred EEEEec---------------------------CCCceeeecCCCCCcEEEEecCC-CcEEEEeccchHHHHHHHhhhhh
Confidence 333322 3688999999998 677788888 6999999999987554 456799
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
|..+.|-++|+++++.+.|++++||+.+......+. .......++..+|++++++ +-+.+..+..+.....
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~-aQs~dN~i~ifs~~~~------ 417 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA-AQSMDNYIAIFSTVPP------ 417 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh-hhccCceEEEEecccc------
Confidence 999999999999999999999999999988775444 3334567889999999988 4444555555554222
Q ss_pred cccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 335 HLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
.....-+.+++|. .-..+.|||||++|++|..+ |.+.+||.++.+++ ..+++|.+++..+.|
T Consensus 418 ----~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd------G~v~~wdwkt~kl~-----~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 418 ----FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD------GKVNFWDWKTTKLV-----SKLKAHDQPCIGVDW 482 (503)
T ss_pred ----cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC------ccEEEeechhhhhh-----hccccCCcceEEEEe
Confidence 1344556778887 46789999999999999887 99999999986665 578899999999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+|... ..+.+++| +|.|.+|+
T Consensus 483 HP~e~---Skvat~~w-~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEP---SKVATCGW-DGLIKIWD 503 (503)
T ss_pred cCCCc---ceeEeccc-CceeEecC
Confidence 99743 44566665 89998874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=266.74 Aligned_cols=240 Identities=17% Similarity=0.284 Sum_probs=207.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCC----------------------------CcceeEEecCCCCCeeEEEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----------------------------GKDACILTSDSQRDVKVLEW 152 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~----------------------------~~~~~~~~~~~~~~v~~l~~ 152 (445)
.++|..|++|+++||.|-.|..|++|.+.... .........+|.++|+.+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 68999999999999999999999999986210 00111223589999999999
Q ss_pred CcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe
Q 013338 153 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY 232 (445)
Q Consensus 153 spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 232 (445)
+|+.+.|++++.|+++|+|.+. .|.++-.+++|. .+|+.+.|+|-|-++|+++.
T Consensus 460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V~y~GH~-~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLVIYKGHL-APVWDVQFAPRGYYFATASH 513 (707)
T ss_pred cccccceeeccCCcceeeeecc-------------------------cceeEEEecCCC-cceeeEEecCCceEEEecCC
Confidence 9998889999999999999998 566777888996 89999999999999999999
Q ss_pred cCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeE
Q 013338 233 ESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI 310 (445)
Q Consensus 233 d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l 310 (445)
| ++.++|........++ .+|-+.|.|+.|+|+..++++|+.|.+|++||+.++.. +.+.+|.++|.+++|||+|++|
T Consensus 514 D-~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 514 D-QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred C-ceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence 9 6999999987766554 46789999999999999999999999999999999987 5677999999999999999999
Q ss_pred EEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 311 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++ ..++.+.+|+.. .+..+..+.+|. .|.++.||.||..||+++.| ++|++||+..
T Consensus 593 aSg----~ed~~I~iWDl~----------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D------nsV~lWD~~~ 650 (707)
T KOG0263|consen 593 ASG----DEDGLIKIWDLA----------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD------NSVRLWDLTK 650 (707)
T ss_pred eec----ccCCcEEEEEcC----------CCcchhhhhcccCceeEEEEecCCCEEEecCCC------CeEEEEEchh
Confidence 977 335566666543 567788899999 89999999999999999988 9999999863
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=243.25 Aligned_cols=285 Identities=13% Similarity=0.169 Sum_probs=230.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|+-+.||++|++||+++.|.+..||.+.....-.+.....+|..+|..+.||||.+++++++.+..+.+||+.++..
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~ 303 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL 303 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh
Confidence 35899999999999999999999999999865333233333458999999999999999999999999999999995443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v 257 (445)
...... .....+.+++|.|||..+++|+.| +++..||+.........+- ...|
T Consensus 304 ~~~y~~-------------------------~~~~S~~sc~W~pDg~~~V~Gs~d-r~i~~wdlDgn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 304 RHLYPS-------------------------GLGFSVSSCAWCPDGFRFVTGSPD-RTIIMWDLDGNILGNWEGVRDPKV 357 (519)
T ss_pred hhhccc-------------------------CcCCCcceeEEccCCceeEecCCC-CcEEEecCCcchhhccccccccee
Confidence 322221 124689999999999999999999 6999999987655444332 3679
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+++.++||+++++.+.|..|++|+..+...+.+.....+|++++.|.+++++++.. ....+++|+..
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL----~~qei~LWDl~-------- 425 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL----QDQEIHLWDLE-------- 425 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc----ccCeeEEeecc--------
Confidence 999999999999999999999999999887776777778999999999999998763 34556666543
Q ss_pred CccccccccccCCC---ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 338 PVDLPDIVSLTGSQ---GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 338 ~~~~~~~~~~~~~~---~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
+...++.+.||. .+..-+|.- +.+++|+||+| +.|+||+..+++++ ..+.||...|++|+|+|
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED------~kvyIWhr~sgkll-----~~LsGHs~~vNcVswNP 492 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED------SKVYIWHRISGKLL-----AVLSGHSKTVNCVSWNP 492 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCC------ceEEEEEccCCcee-----EeecCCcceeeEEecCC
Confidence 455677888887 344445654 55899999998 99999999988776 48999999999999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.... ++|.+-++|+|.+|-..
T Consensus 493 ~~p~----m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 493 ADPE----MFASASDDGTIRIWGPS 513 (519)
T ss_pred CCHH----HhhccCCCCeEEEecCC
Confidence 7654 68888899999998654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=221.28 Aligned_cols=257 Identities=16% Similarity=0.228 Sum_probs=205.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+.+...||++.||+++ ...|++||+...+...+..+ .+|...|+++.|..+|+.+++++.||+++|||++....
T Consensus 41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~- 117 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC- 117 (311)
T ss_pred cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-
Confidence 4699999999999999775 56799999986555444444 58999999999999999999999999999999984221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~~~~~v 257 (445)
.+.++ +. .+|+++..+|+...|+++..+ |.|++||+....+.. +......|
T Consensus 118 ------------------------qR~~~-~~-spVn~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~~liPe~~~~i 170 (311)
T KOG0315|consen 118 ------------------------QRNYQ-HN-SPVNTVVLHPNQTELISGDQS-GNIRVWDLGENSCTHELIPEDDTSI 170 (311)
T ss_pred ------------------------chhcc-CC-CCcceEEecCCcceEEeecCC-CcEEEEEccCCccccccCCCCCcce
Confidence 12222 33 899999999999999999888 899999999875533 33445789
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.++...|||..++.+...|+.++|++-+... .++..|...+..+.+|||+++|+++++ +..+++|+...
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss----dktv~iwn~~~ 246 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS----DKTVKIWNTDD 246 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC----CceEEEEecCC
Confidence 9999999999999999999999999977543 346689999999999999999997743 34445554321
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
-.+.-..+++|. ++.+++||.||+||++++.| +.+++|++..++.+ +.+.+|-....++
T Consensus 247 ---------~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd------~~~rlW~~~~~k~v-----~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 247 ---------FFKLELVLTGHQRWVWDCAFSADGEYLVTASSD------HTARLWDLSAGKEV-----RQYQGHHKAAVCV 306 (311)
T ss_pred ---------ceeeEEEeecCCceEEeeeeccCccEEEecCCC------CceeecccccCcee-----eecCCcccccEEE
Confidence 123345677888 99999999999999999998 99999999988866 4677777665554
Q ss_pred e
Q 013338 410 A 410 (445)
Q Consensus 410 ~ 410 (445)
+
T Consensus 307 ~ 307 (311)
T KOG0315|consen 307 A 307 (311)
T ss_pred E
Confidence 4
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=239.05 Aligned_cols=281 Identities=19% Similarity=0.325 Sum_probs=224.4
Q ss_pred CcCCeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCccee--EE---------ecCCCCCeeEEEECcCCCcEEEEecC
Q 013338 98 PEVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDAC--IL---------TSDSQRDVKVLEWRPNGGRSLSVGCK 165 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~--~~---------~~~~~~~v~~l~~spd~~~l~~~~~d 165 (445)
++.+|.+++|+|-.. .+++++.|-..++|++......... .+ ....+..|++|+|+.+|..|+++..|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 467899999999776 8999999999999999642221111 11 01234679999999999999999999
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
|.+++|+.. +. ++.++..|+ ++|.++.|+..|.+|++++.| |++.+||..++
T Consensus 257 G~~riw~~~-G~-------------------------l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD-~ttilwd~~~g 308 (524)
T KOG0273|consen 257 GEARIWNKD-GN-------------------------LISTLGQHK-GPIFSLKWNKKGTYILSGGVD-GTTILWDAHTG 308 (524)
T ss_pred cEEEEEecC-ch-------------------------hhhhhhccC-CceEEEEEcCCCCEEEeccCC-ccEEEEeccCc
Confidence 999999987 11 344466675 899999999999999999999 69999999999
Q ss_pred CceeeecC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 246 LGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 246 ~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
...+.+.. ...-.++.|- +...+++++.|+.|+|+-+..... .++.+|.+.|.++.|+|.|.+|+++. . +..+
T Consensus 309 ~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-d---D~Tl 383 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-D---DGTL 383 (524)
T ss_pred eEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-C---CCee
Confidence 88666554 4444789997 445789999999999999987766 67889999999999999999999763 3 3455
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCC---------CEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG---------ERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g---------~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
++|... .......+..|. .|+.+.|+|+| ..|++++.| ++|++||+..+..+
T Consensus 384 kiWs~~----------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d------stV~lwdv~~gv~i-- 445 (524)
T KOG0273|consen 384 KIWSMG----------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD------STVKLWDVESGVPI-- 445 (524)
T ss_pred EeeecC----------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC------CeEEEEEccCCcee--
Confidence 555432 455677788888 89999999975 478888888 99999999986655
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+..|..+|++++|||+|+| ++-|--+|.|..++.
T Consensus 446 ---~~f~kH~~pVysvafS~~g~y-----lAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 446 ---HTLMKHQEPVYSVAFSPNGRY-----LASGSLDGCVHIWST 481 (524)
T ss_pred ---EeeccCCCceEEEEecCCCcE-----EEecCCCCeeEeccc
Confidence 578899999999999999997 666666777777664
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=222.34 Aligned_cols=239 Identities=13% Similarity=0.191 Sum_probs=201.8
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc---ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+...|..++|+|.|+++|+|+-|+...||++...+.. .......+|.+-+.++.|-+| .+|++++.|.+..+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcc
Confidence 3457999999999999999999999999999754222 223334689999999999997 899999999999999999
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCce-eeec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT-PIRR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~ 252 (445)
+. .....+.+|. +.|.+++++| +++.+++|+-| +..++||++.+... .+.+
T Consensus 175 ~g-------------------------~~~~~f~GH~-gDV~slsl~p~~~ntFvSg~cD-~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 175 TG-------------------------QQTQVFHGHT-GDVMSLSLSPSDGNTFVSGGCD-KSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred cc-------------------------eEEEEecCCc-ccEEEEecCCCCCCeEEecccc-cceeeeeccCcceeEeecc
Confidence 33 3556688886 8999999999 99999999999 59999999998774 4667
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|...|++++|.|+|.-|++|+.|++.++||++..+..... .....|++++||..|++|+++.. ++...+|+.-
T Consensus 228 hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~----d~~c~vWDtl 303 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD----DFTCNVWDTL 303 (343)
T ss_pred cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeec----CCceeEeecc
Confidence 8999999999999999999999999999999997764333 34557899999999999997733 3455555532
Q ss_pred CCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
..+.+..+.+|. .|+++..+|||.-+++||.| .+++||.
T Consensus 304 ----------k~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD------s~lriW~ 343 (343)
T KOG0286|consen 304 ----------KGERVGVLAGHENRVSCLGVSPDGMAVATGSWD------STLRIWA 343 (343)
T ss_pred ----------ccceEEEeeccCCeeEEEEECCCCcEEEecchh------HheeecC
Confidence 556677888999 99999999999999999988 8999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=254.37 Aligned_cols=282 Identities=20% Similarity=0.308 Sum_probs=223.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.++.|+++|+.+++++.++.+++|+....+......+ .+|...|++++|+|++..+++++.|++|+|||+..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~---- 234 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD---- 234 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccC----
Confidence 5799999999999999999999999999843221133333 57999999999999998899999999999999941
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
...+++++++|. ..|++++|+|+++++++|+.| ++|++||++++++.. +..|.+.|+
T Consensus 235 --------------------~~~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D-~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 235 --------------------DGRNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDD-GTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred --------------------CCeEEEEecCCC-CceEEEEecCCCCEEEEecCC-CcEEEEeccCCeEEEeeeccCCceE
Confidence 114677888996 899999999999999999999 699999999987754 667889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCC--CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+++|++++++|++++.|+.|++||+.++.. ..+..+.. .++++.|+|++++++++.. ++.+.+|+..
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~---- 364 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLR---- 364 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEcc----
Confidence 999999999999999999999999999982 34444443 5999999999999998744 3344444432
Q ss_pred ccccCccccccccccCCC-c---cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCc
Q 013338 334 AHLLPVDLPDIVSLTGSQ-G---IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKP 408 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~---v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~ 408 (445)
.......+.+|. . +.+...++.++++++++.| +.|++||+.++..+ ..+.+| ...+..
T Consensus 365 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d------~~v~~~~~~s~~~~-----~~l~~h~~~~~~~ 427 (456)
T KOG0266|consen 365 ------SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED------GSVYVWDSSSGGIL-----QRLEGHSKAAVSD 427 (456)
T ss_pred ------CCcceeeecccCCcceeEecccccCCCCeEEEEeCC------ceEEEEeCCccchh-----hhhcCCCCCceec
Confidence 344455555555 2 3445567899999999998 99999999985554 477889 788899
Q ss_pred eeEeecCCCCCCCeEEEEe-cCeeeEeeee
Q 013338 409 VAFSFHDKFKQGPLLSVCW-SSGFCCTYPL 437 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~-~~G~v~~~~~ 437 (445)
++|+|..++ +.+.++ .++.+.+|.-
T Consensus 428 ~~~~~~~~~----~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 428 LSSHPTENL----IASSSFEGDGLIRLWKY 453 (456)
T ss_pred cccCCCcCe----eeecCcCCCceEEEecC
Confidence 999998776 233333 4677777653
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=240.60 Aligned_cols=308 Identities=15% Similarity=0.262 Sum_probs=234.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC--
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-- 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~-- 176 (445)
-..|.++.|+.|.++|++|+.|-+++||.++...+- ......+|.+.|.+.-|..+...+++.+.||.+.+|.....
T Consensus 145 fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 145 FDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPP 223 (893)
T ss_pred ccceeEEEeccCCceEEeccccceEEEEEecccccc-ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCc
Confidence 357999999999999999999999999999754442 23344689999999999999889999999999999987611
Q ss_pred --------------------CCc--c---cccc------ccccc------------------------------------
Q 013338 177 --------------------GNA--A---SVRS------GAASF------------------------------------ 189 (445)
Q Consensus 177 --------------------~~~--~---~~~~------~~~~~------------------------------------ 189 (445)
++. . .... .....
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 000 0 0000 00000
Q ss_pred ------cccccCCCCCceE-------------------EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC
Q 013338 190 ------LGALSRGPGTRWT-------------------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 190 ------~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
+...+....+.|. .+-..++|. ..+++++++|||+++++|+.| |.|+|||...
T Consensus 304 Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eD-gKVKvWn~~S 381 (893)
T KOG0291|consen 304 SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIATGAED-GKVKVWNTQS 381 (893)
T ss_pred ecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEeccCC-CcEEEEeccC
Confidence 0001111222232 112244565 799999999999999999999 7999999999
Q ss_pred CCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc-CCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
+-+. .+..|.+.|+.+.|+..|+.+++++.||+|+.||+..... +++. ...-...+++..|.|..+++|..+. .
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~---F 458 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS---F 458 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce---E
Confidence 9884 5667999999999999999999999999999999998877 4444 3344568899999999888765443 4
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
.+.+|+.. +++.+..+.||. +|.+++|+|+|..||++|.| .+|++||+-..... +.++
T Consensus 459 ~IfvWS~q----------TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD------kTVRiW~if~s~~~----vEtl- 517 (893)
T KOG0291|consen 459 EIFVWSVQ----------TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD------KTVRIWDIFSSSGT----VETL- 517 (893)
T ss_pred EEEEEEee----------cCeeeehhcCCCCcceeeEEccccCeEEecccc------ceEEEEEeeccCce----eeeE-
Confidence 55555443 778888999999 99999999999999999988 99999998643222 1122
Q ss_pred CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 401 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+..-+..++|+|||+- ++|..-+|.|.+|+.-
T Consensus 518 ~i~sdvl~vsfrPdG~e-----laVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 518 EIRSDVLAVSFRPDGKE-----LAVATLDGQITFFDIK 550 (893)
T ss_pred eeccceeEEEEcCCCCe-----EEEEEecceEEEEEhh
Confidence 24567889999999985 8899999999999864
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=242.67 Aligned_cols=285 Identities=17% Similarity=0.287 Sum_probs=224.5
Q ss_pred CCeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
.+|..++|+..|.+||.|+ .-|.+-||++... .. ....++|...+++++++|||+.+++++.||.|+|||..
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sY-VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~---- 380 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SY-VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ---- 380 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeecc--ce-eeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc----
Confidence 4689999999999999987 4589999999642 22 22235899999999999999999999999999999998
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC--CC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~--~~ 256 (445)
++ -|..++..|. ..|+.+.|+..|+.+++++.| |+|+.||+...+..+.+... -.
T Consensus 381 -----Sg----------------fC~vTFteHt-s~Vt~v~f~~~g~~llssSLD-GtVRAwDlkRYrNfRTft~P~p~Q 437 (893)
T KOG0291|consen 381 -----SG----------------FCFVTFTEHT-SGVTAVQFTARGNVLLSSSLD-GTVRAWDLKRYRNFRTFTSPEPIQ 437 (893)
T ss_pred -----Cc----------------eEEEEeccCC-CceEEEEEEecCCEEEEeecC-CeEEeeeecccceeeeecCCCcee
Confidence 32 4788899997 899999999999999999999 89999999988776655443 45
Q ss_pred eeEEEEcCCCCEEEEEecCC-eEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 257 LSILKWSPTGDYFFAAKFDG-TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..|++..|.|..+++|+.|. .|++|++++|+. ..+.+|.++|.+++|+|++..|+++ ..++.+++|+...
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~----SWDkTVRiW~if~---- 509 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASG----SWDKTVRIWDIFS---- 509 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEec----cccceEEEEEeec----
Confidence 67889999999999998887 799999999998 5678999999999999999998876 3445555555421
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee---------------eeeeee
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL---------------SLIGFI 399 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~---------------~~~~~~ 399 (445)
....+.++.....+..++|+|||+.||++..| |.|.+||++.+..... .....-
T Consensus 510 -----s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld------gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 510 -----SSGTVETLEIRSDVLAVSFRPDGKELAVATLD------GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred -----cCceeeeEeeccceeEEEEcCCCCeEEEEEec------ceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 22344555554579999999999999999998 9999999875433210 000001
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+...+.+++|+||.+ +|+-| .+..|+.|++.
T Consensus 579 sa~~K~Ftti~ySaDG~~----IlAgG-~sn~iCiY~v~ 612 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKC----ILAGG-ESNSICIYDVP 612 (893)
T ss_pred cccCCceEEEEEcCCCCE----EEecC-CcccEEEEECc
Confidence 123456789999999986 45444 67788888864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=229.79 Aligned_cols=323 Identities=19% Similarity=0.239 Sum_probs=230.5
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEcc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAP 173 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~ 173 (445)
+..+++-..|||.|.++|+|...|.||||+.... ...++.....-.++|..|+|++|+++++++|.. |.+.+||.
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~-~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS 136 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK-EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS 136 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCc-ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence 4568999999999999999999999999998532 222333334567899999999999999999864 67778886
Q ss_pred CCC-----CCccccccccccccc--cccCCC---------CCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeE
Q 013338 174 SYP-----GNAASVRSGAASFLG--ALSRGP---------GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237 (445)
Q Consensus 174 ~~~-----~~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v 237 (445)
... ++.+.+.+..+.+-. .+..++ ...++.-.+++.|+ .-|.++.|+|||.++++++.| |++
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs-kFV~~VRysPDG~~Fat~gsD-gki 214 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS-KFVNCVRYSPDGSRFATAGSD-GKI 214 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc-cceeeEEECCCCCeEEEecCC-ccE
Confidence 521 222222222222111 122222 22344556677776 799999999999999999999 799
Q ss_pred EEEEccCCCceeee----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------------------
Q 013338 238 TIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------- 288 (445)
Q Consensus 238 ~vwd~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------------------------- 288 (445)
.+||-.+++..... .|++.|.+++|+||++.+++++.|.+++|||+.+.++
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lI 294 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLI 294 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEE
Confidence 99999999875543 5889999999999999999999999999999986542
Q ss_pred -------------------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc---cc-----------
Q 013338 289 -------------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD---AH----------- 335 (445)
Q Consensus 289 -------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~----------- 335 (445)
..+.+|...|+++..+|++++|+++ +.++.+..|.......... .+
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG-SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee-ccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 1123788899999999999999866 3445555554432110000 00
Q ss_pred ------------c--c-------------Cccccc-------------------cccccCC--------C-ccceEEeCC
Q 013338 336 ------------L--L-------------PVDLPD-------------------IVSLTGS--------Q-GIEKIAWDA 360 (445)
Q Consensus 336 ------------~--~-------------~~~~~~-------------------~~~~~~~--------~-~v~~~~~sp 360 (445)
+ . ....++ +..++.+ . ...+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 0 0 000000 0011111 1 457899999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++.+|.|+.| +.|+||.+..+.+.. ...+..|..+|+++++|||+.| |++|--+++|.+|++-
T Consensus 454 ~~~~vaVGG~D------gkvhvysl~g~~l~e---e~~~~~h~a~iT~vaySpd~~y-----la~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 454 DGSEVAVGGQD------GKVHVYSLSGDELKE---EAKLLEHRAAITDVAYSPDGAY-----LAAGDASRKVVLYDVA 517 (603)
T ss_pred CCCEEEEeccc------ceEEEEEecCCcccc---eeeeecccCCceEEEECCCCcE-----EEEeccCCcEEEEEcc
Confidence 99999999988 899999999866542 2245578999999999999987 8888778888888764
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=232.83 Aligned_cols=278 Identities=22% Similarity=0.340 Sum_probs=220.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|.+++|+|++++|++++.++.+++|++.. ++..... ..|...+..+.|+|+++.+++++.++.+++|++....
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~- 84 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLET--GELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE- 84 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeC--CCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-
Confidence 35699999999999999999999999999864 3333333 4688889999999998788888889999999998331
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
....+..|. ..+.++.|+++++++++++.+ |.+.+||+.+++... +..|...+
T Consensus 85 ------------------------~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 85 ------------------------CVRTLTGHT-SYVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred ------------------------ceEEEeccC-CcEEEEEEcCCCCEEEEecCC-CeEEEEECCCcEEEEEeccCCCcE
Confidence 223344554 689999999998888888767 799999999766544 44577889
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++|+|+++++++++.++.|++||+++++. ..+..+...+.++.|+|+++.+++++. ++.+..|++.
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~---------- 207 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLS---------- 207 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECC----------
Confidence 9999999999998888899999999997766 455577779999999999988887754 4444444432
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
....+..+..|. .+.+++|+|++.++++++.+ +.|++|++.+++.. ..+.+|...|.+++|+|++
T Consensus 208 ---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~ 273 (289)
T cd00200 208 ---TGKCLGTLRGHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTGECV-----QTLSGHTNSVTSLAWSPDG 273 (289)
T ss_pred ---CCceecchhhcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCceeE-----EEccccCCcEEEEEECCCC
Confidence 234455555666 89999999998888888756 89999999875544 3566888899999999997
Q ss_pred CCCCCCeEEEEecCeeeEeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~ 436 (445)
++ +..+..+|.+.+|+
T Consensus 274 ~~-----l~~~~~d~~i~iw~ 289 (289)
T cd00200 274 KR-----LASGSADGTIRIWD 289 (289)
T ss_pred CE-----EEEecCCCeEEecC
Confidence 64 77778899998874
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=263.33 Aligned_cols=293 Identities=12% Similarity=0.176 Sum_probs=220.0
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCC--CCcc--eeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--EGKD--ACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWA 172 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~--~~~~--~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~ 172 (445)
+...|.+++|+|+|++||+|+.|+.|+||+.... .+.. .......+...|.+++|++. +..+++++.||.|++||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 4567999999999999999999999999997531 1111 01111234567999999875 46677788899999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
+... ..+..+.+|. ..|++++|+| ++.+|++++.| |.|++||++++......
T Consensus 562 ~~~~-------------------------~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~D-g~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 562 VARS-------------------------QLVTEMKEHE-KRVWSIDYSSADPTLLASGSDD-GSVKLWSINQGVSIGTI 614 (793)
T ss_pred CCCC-------------------------eEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCC-CEEEEEECCCCcEEEEE
Confidence 8722 2445567775 8999999997 78899999999 79999999988776555
Q ss_pred cCCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 RGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 ~~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.+...+.++.|+ ++|.+|++|+.|+.|++||+++.+. ..+.+|...|.++.|. ++.++++++ .++ .+++|+.
T Consensus 615 ~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~---~ikiWd~ 689 (793)
T PLN00181 615 KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDN---TLKLWDL 689 (793)
T ss_pred ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCC---EEEEEeC
Confidence 566789999995 5799999999999999999987653 4566899999999997 677777663 333 4555543
Q ss_pred CCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee------ee--ee
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL------IG--FI 399 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~------~~--~~ 399 (445)
.... .......+..+.+|. .+..++|+|++++|++|+.| +.|++|+......+.... +. ..
T Consensus 690 ~~~~----~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D------~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~ 759 (793)
T PLN00181 690 SMSI----SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET------NEVFVYHKAFPMPVLSYKFKTIDPVSGLEV 759 (793)
T ss_pred CCCc----cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC------CEEEEEECCCCCceEEEecccCCccccccc
Confidence 2110 001234567788888 78999999999999999988 999999987543221100 00 11
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+...|.+++|+|++.+ |+.|.++|.|.+|++
T Consensus 760 ~~~~~~V~~v~ws~~~~~-----lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSST-----LVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCe-----EEEecCCCcEEEEec
Confidence 235567999999998874 778889999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=250.56 Aligned_cols=265 Identities=16% Similarity=0.224 Sum_probs=212.3
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc-------cccccCCCCCceEEEEeecccCCCce
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF-------LGALSRGPGTRWTLVDFLRSQNGEQI 215 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (445)
....++|..|++|+..++.+-.|..|++|.+... ....+.....-. +..........--..+.+.+|. ++|
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-GPV 454 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-GPV 454 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhhhccccccccchhhhhccccCCceeEEeecCC-Cce
Confidence 4567999999999775555556899999999832 211111111000 0000001111112445688996 899
Q ss_pred eEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccC
Q 013338 216 TALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS 293 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~ 293 (445)
..+.|+|+.++|++++.| +++++|.+.+.... ...+|..+|+++.|+|.|-++|+++.|++-++|.....+. +.+.+
T Consensus 455 yg~sFsPd~rfLlScSED-~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSED-SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeecccccceeeccCC-cceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 999999999999999999 69999999998774 4557889999999999999999999999999999988776 56679
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
|.+.|.|+.|+|+..|++++ +.+..+++|+.. ++..++.+.||. +|.+++|||+|++|++|+.|
T Consensus 534 hlsDV~cv~FHPNs~Y~aTG----SsD~tVRlWDv~----------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed- 598 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATG----SSDRTVRLWDVS----------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDED- 598 (707)
T ss_pred cccccceEEECCcccccccC----CCCceEEEEEcC----------CCcEEEEecCCCCceEEEEEcCCCceEeecccC-
Confidence 99999999999999999987 335667777654 677789999999 99999999999999999988
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
+.|.+||+.+++++ ..+.+|.+.|.++.||.||. +|++|--+..|.+|++...
T Consensus 599 -----~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS~dg~-----vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 -----GLIKIWDLANGSLV-----KQLKGHTGTIYSLSFSRDGN-----VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred -----CcEEEEEcCCCcch-----hhhhcccCceeEEEEecCCC-----EEEecCCCCeEEEEEchhh
Confidence 99999999987776 47889999999999999987 5899989999999998743
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=223.24 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=204.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+|+++.|..+++++|+.|++++|||+. +|+...++ .+|...|..+++|+...++++++.|+.|+.||+...
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIwDla--tg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--- 225 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIWDLA--TGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--- 225 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEEEcc--cCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhh---
Confidence 479999999999999999999999999995 47766666 589999999999999899999999999999999822
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
+.++.+.+|- ..|.|++.+|.-..|++++.|. ++++||+++..... +.+|...|.
T Consensus 226 ----------------------kvIR~YhGHl-S~V~~L~lhPTldvl~t~grDs-t~RvWDiRtr~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 226 ----------------------KVIRHYHGHL-SGVYCLDLHPTLDVLVTGGRDS-TIRVWDIRTRASVHVLSGHTNPVA 281 (460)
T ss_pred ----------------------hhHHHhcccc-ceeEEEeccccceeEEecCCcc-eEEEeeecccceEEEecCCCCcce
Confidence 3455677886 8999999999999999999995 99999999887654 557999999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++.+.|....+++|+.|++|++||++.++. ..+..|...+++++.+|....+++++.+ .+..|.+ +
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~---p-------- 348 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKL---P-------- 348 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccC---C--------
Confidence 999999999999999999999999999887 6788999999999999998888876442 2344433 2
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+..+..+.+|. -|++++.+.|| ++++|+.. |.+.+||.++|...
T Consensus 349 --~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn------g~~~fwdwksg~ny 394 (460)
T KOG0285|consen 349 --EGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN------GSIMFWDWKSGHNY 394 (460)
T ss_pred --ccchhhccccccceeeeeeeccCc-eEEEcCCc------eEEEEEecCcCccc
Confidence 445566688888 79999998887 56677666 99999999988765
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=232.06 Aligned_cols=238 Identities=15% Similarity=0.277 Sum_probs=197.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++.|+++|.++++|+.+|.|++|+.+. ..+..+...|...|++++|+|+..++++++.||+|+|||.....+.
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccch---hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh
Confidence 3699999999999999999999999999753 2233343446699999999999899999999999999999844332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~ 258 (445)
..+++|. -.|.+++|+|.-.+|++++.|+ .|++||.+++.+. .+..|+..|.
T Consensus 216 -------------------------~vL~GHg-wdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 216 -------------------------RVLRGHG-WDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred -------------------------heeccCC-CCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEE
Confidence 2356775 8999999999999999999995 9999999999885 4667899999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+.|+|++++|++++.|..++++|+++.+. ..+.+|...++++.|+|-..-|++.+..++.+..+.+.
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~----------- 337 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG----------- 337 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc-----------
Confidence 999999999999999999999999996554 67789999999999999888888776666655555543
Q ss_pred Cccccccccc-cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 338 PVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 338 ~~~~~~~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+++..+ .+|. .|++++|+|-|..|++|+.| .++++|.-.
T Consensus 338 --~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd------~t~rfw~r~ 380 (464)
T KOG0284|consen 338 --LEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND------RTVRFWTRN 380 (464)
T ss_pred --ccccccCCCcccccceeeeeccccceeEeecCCC------cceeeeccC
Confidence 12222222 3566 89999999999999999888 899999754
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-31 Score=222.71 Aligned_cols=265 Identities=13% Similarity=0.197 Sum_probs=223.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|+.+-|+|+-..+++++.|++|++||.. +++....+ ++|...|.+++|+..|+.+++++.|-.+++||....
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~--tg~~e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-- 182 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTE--TGELERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-- 182 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEcc--chhhhhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHH--
Confidence 3579999999999999999999999999995 46664544 689999999999999988888999977999998721
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
+.+++.+.+|. ..|.++.|-|.|.+|++++.|+ +|+.|++.++.+.. +.+|...|
T Consensus 183 ----------------------~~c~ks~~gh~-h~vS~V~f~P~gd~ilS~srD~-tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 183 ----------------------FRCIKSLIGHE-HGVSSVFFLPLGDHILSCSRDN-TIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred ----------------------HHHHHHhcCcc-cceeeEEEEecCCeeeeccccc-ceeEEecccceeEEeccCchHhE
Confidence 12444566674 7899999999999999999995 99999999998854 56788899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCC---------------CeEEEEEcCCceEE
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG---------------RMILLAFAGSLTLG 321 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~---------------~~l~~~~~~~~~~~ 321 (445)
..++.+.||..+++++.|.+|++|-+.++++ ..+..|..+|.+++|.|.. +++.++ ..++
T Consensus 239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~----SrDk 314 (406)
T KOG0295|consen 239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG----SRDK 314 (406)
T ss_pred EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee----cccc
Confidence 9999999999999999999999999999987 5677899999999998743 233333 3456
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
.+++|+.. .+.++.++.+|. +|.+++|+|.|+||+++..| +++++||+++++++ ..+.
T Consensus 315 tIk~wdv~----------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD------ktlrvwdl~~~~cm-----k~~~ 373 (406)
T KOG0295|consen 315 TIKIWDVS----------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD------KTLRVWDLKNLQCM-----KTLE 373 (406)
T ss_pred eEEEEecc----------CCeEEEEEecccceeeeeEEcCCCeEEEEEecC------CcEEEEEeccceee-----eccC
Confidence 66666554 678899999999 99999999999999999888 99999999987766 4677
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
.|...|++++|..+--|
T Consensus 374 ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPY 390 (406)
T ss_pred CCcceeEEEecCCCCce
Confidence 89999999999876443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=204.75 Aligned_cols=258 Identities=14% Similarity=0.157 Sum_probs=212.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++.|+-||++.++++.|.+|++|+. ..+..+++. .+|...|..++.+.|+.++.++|.|..+.+||+.++
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp--~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--- 91 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNP--LRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--- 91 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecc--cccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccC---
Confidence 46999999999999999999999999998 457776666 689999999999999999999999999999999933
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee---cCCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~~~ 256 (445)
+..+.+++|. +.|+.++|+.+...+++|+.|. ++++||-++....+++ .....
T Consensus 92 ----------------------kv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~ 147 (307)
T KOG0316|consen 92 ----------------------KVDRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDG 147 (307)
T ss_pred ----------------------eeeeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCc
Confidence 3566688886 8999999999999999999995 9999999877554433 34678
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
|.++.. .+..|++|+.||+++.||++.+++.. .....+|++++|+++++..++++ .+..+++-++.
T Consensus 148 V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~----l~stlrLlDk~------- 213 (307)
T KOG0316|consen 148 VSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASS----LDSTLRLLDKE------- 213 (307)
T ss_pred eeEEEe--cccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEee----ccceeeecccc-------
Confidence 888888 46789999999999999999987632 23456899999999999988763 34555554433
Q ss_pred cCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC-CCceeEe
Q 013338 337 LPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN-PKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-v~~v~~s 412 (445)
+++.++.+++|. .-...+++.....+++||+| |.|++||+....++. .+..++.. |.++++.
T Consensus 214 ---tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED------G~Vy~wdLvd~~~~s-----k~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 214 ---TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED------GKVYFWDLVDETQIS-----KLSVVSTVIVTDLSCH 279 (307)
T ss_pred ---hhHHHHHhcccccceeeeeeeecccceeEEeccCC------ceEEEEEeccceeee-----eeccCCceeEEeeecc
Confidence 778889999998 34566788888899999998 999999999876653 45556666 7889998
Q ss_pred ecC
Q 013338 413 FHD 415 (445)
Q Consensus 413 pdg 415 (445)
|.-
T Consensus 280 p~~ 282 (307)
T KOG0316|consen 280 PTM 282 (307)
T ss_pred cCc
Confidence 863
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=211.68 Aligned_cols=292 Identities=16% Similarity=0.216 Sum_probs=210.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|.+++.+|+.+++|+|+.|....||++. ++.....+ .+|...|+++.|+.||.+|+++..+|.|+||...++..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~--~ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDIS--TGEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE 140 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEcc--CCcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce
Confidence 3469999999999999999999999999995 46666655 58999999999999988888888899999999985443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v 257 (445)
...+ ... -..+.-+.|+|.+..|++|+.| |.+.+|.+.++ .++.+.+|...+
T Consensus 141 ~~~~-------------------------~~e-~~dieWl~WHp~a~illAG~~D-GsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 141 QWKL-------------------------DQE-VEDIEWLKWHPRAHILLAGSTD-GSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred EEEe-------------------------ecc-cCceEEEEecccccEEEeecCC-CcEEEEECCCcceeeEecCCCCCc
Confidence 2222 112 2678889999999999999999 89999999984 456677889999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-CCCCCeeEEEECCCCCeEEEEEcCC-------ceEEEEEeccC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILLAFAGS-------LTLGSIHFASK 328 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-------~~~~~~~~~~~ 328 (445)
++-.|.|+|+.++++..||+|++||..+++.. .+. .......++.++..+..++.+..+. ..-.++...+.
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 99999999999999999999999999998762 222 1122334444444444333221110 00011111110
Q ss_pred -CC------------------------------CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 329 -PP------------------------------SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 329 -~~------------------------------~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.+ .....+|+.....++..-.|. +|+.+.|-+ ..+|++++.+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~----- 347 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN----- 347 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC-----
Confidence 00 000011222222334444566 899999998 7889999888
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
|.|+.||.++|++. ..+.||...|.+++.+|++++ +++ ...++...+|..
T Consensus 348 -g~v~~wDaRtG~l~-----~~y~GH~~~Il~f~ls~~~~~----vvT-~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 -GKVRQWDARTGQLK-----FTYTGHQMGILDFALSPQKRL----VVT-VSDDNTALVFEV 397 (399)
T ss_pred -ceEEeeeccccceE-----EEEecCchheeEEEEcCCCcE----EEE-ecCCCeEEEEec
Confidence 99999999998876 478899999999999999885 343 346777776653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=202.44 Aligned_cols=269 Identities=16% Similarity=0.198 Sum_probs=215.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+.+|..||+|+.|+++.+|+++.. .........+|.+.|-.++|+|... .+++++.|.+|++||+...+.
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 35899999999999999999999999999753 2222223358999999999987644 456667789999999985444
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
...+.+ . ..-..+.|+|+|+++++++.|+ .|.+.|.++.+........-.+.
T Consensus 100 ~~~i~~-------------------------~--~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 100 TARIET-------------------------K--GENINITWSPDGEYIAVGNKDD-RITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred EEEeec-------------------------c--CcceEEEEcCCCCEEEEecCcc-cEEEEEecccceeehhcccceee
Confidence 333222 1 3345678999999999999996 99999999887777667777889
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.++|+-++..++.....|+|.|.....-+. ..+..|.....|+.|+|+|+++|+| ..+..+.+|+..
T Consensus 152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G----sADAlvSLWD~~-------- 219 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG----SADALVSLWDVD-------- 219 (313)
T ss_pred eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec----cccceeeccChh--------
Confidence 999998888888777789999999887666 6678999999999999999999988 346777777654
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..-+++.+.-+. +|..+.||.||++||++|+| ..|-|=++++|..+.. + .+.++...|+|+|...
T Consensus 220 --ELiC~R~isRldwpVRTlSFS~dg~~lASaSED------h~IDIA~vetGd~~~e-----I-~~~~~t~tVAWHPk~~ 285 (313)
T KOG1407|consen 220 --ELICERCISRLDWPVRTLSFSHDGRMLASASED------HFIDIAEVETGDRVWE-----I-PCEGPTFTVAWHPKRP 285 (313)
T ss_pred --HhhhheeeccccCceEEEEeccCcceeeccCcc------ceEEeEecccCCeEEE-----e-eccCCceeEEecCCCc
Confidence 556677787788 89999999999999999998 8999999999887632 2 3577889999999855
Q ss_pred CCCCCeEEEEec
Q 013338 417 FKQGPLLSVCWS 428 (445)
Q Consensus 417 ~~~~~~l~~~~~ 428 (445)
+|+.+.+
T Consensus 286 -----LLAyA~d 292 (313)
T KOG1407|consen 286 -----LLAYACD 292 (313)
T ss_pred -----eeeEEec
Confidence 4666543
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=242.45 Aligned_cols=305 Identities=17% Similarity=0.269 Sum_probs=227.7
Q ss_pred CCeeEEEEccCCCEEEEEE--CCCeEEEEEccCCC----------CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSE----------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~--~d~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
..|.+++.+|||..+|+|+ .|+.++||+.+.-- .+.++.. ..|.+.|+|+.|+|||.+|++++.|+.
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeeccCcce
Confidence 3589999999999999999 99999999875210 1222233 469999999999999999999999999
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
|.||.... ........ ..-......+|++...+++|. ..|..++|+|++.+|++++.| ++|.+|+..+.+.
T Consensus 93 v~iW~~~~-~~~~~~fg------s~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~D-nsViiwn~~tF~~ 163 (942)
T KOG0973|consen 93 VMIWERAE-IGSGTVFG------STGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLD-NSVIIWNAKTFEL 163 (942)
T ss_pred EEEeeecc-cCCccccc------ccccccccceeeEEEEEecCC-CccceeccCCCccEEEEeccc-ceEEEEcccccee
Confidence 99999873 11110000 000112245799999999996 899999999999999999999 5999999999866
Q ss_pred e-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc------CCCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 248 T-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS------STSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 248 ~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
. .+.+|.+.|..+.|.|-|+||++-+.|++|+||++......+ +. .....+..+.|||||.+|++..+..+.
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 4 466789999999999999999999999999999987765522 22 233457889999999999987554433
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCC-----CC------------EEEEEEcCCCcccceEEE
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS-----GE------------RLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~-----g~------------~l~~~s~d~~d~~d~~i~ 381 (445)
...+.+-+.. +++.-..+-+|. ++..+.|+|. .+ .+|+||.| ++|-
T Consensus 244 ~~~~~IieR~----------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD------rSlS 307 (942)
T KOG0973|consen 244 KSTIAIIERG----------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD------RSLS 307 (942)
T ss_pred cceeEEEecC----------CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC------ccEE
Confidence 3333332211 445556678898 9999999981 11 56777777 9999
Q ss_pred EEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 382 IYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
||.....+.+. .+.. -.+..|.+++|+|||.. |-+|.-||.|.++.|.-
T Consensus 308 VW~T~~~RPl~--vi~~--lf~~SI~DmsWspdG~~-----LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 308 VWNTALPRPLF--VIHN--LFNKSIVDMSWSPDGFS-----LFACSLDGTVALIHFEE 356 (942)
T ss_pred EEecCCCCchh--hhhh--hhcCceeeeeEcCCCCe-----EEEEecCCeEEEEEcch
Confidence 99987544331 1111 23568999999999874 55666799999887753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=198.51 Aligned_cols=244 Identities=17% Similarity=0.321 Sum_probs=188.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|.|++||+|+.|.++.||.-...+.++...+ .+|...|.+++|+++|++|++++.|..|-||.+..
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de--- 136 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE--- 136 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC---
Confidence 34699999999999999999999999998765445554444 58999999999999999999999999999999872
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC----ceeeecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~~~~ 254 (445)
++.+.+...++.|. ..|..+.|+|...+|+++++|+ +|++|+-..+. ...+.+|.
T Consensus 137 -------------------ddEfec~aVL~~Ht-qDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 137 -------------------DDEFECIAVLQEHT-QDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred -------------------CCcEEEEeeecccc-ccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCcc
Confidence 23456888899997 7999999999999999999996 99999877332 24566788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..|.+++|++.|..|++++.|++|+||-..+.- -..|...+..+.|. ...|++++ ++..+..++-.+.+. .
T Consensus 196 ~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~g-gD~~i~lf~~s~~~d---~ 266 (312)
T KOG0645|consen 196 NTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGG-GDDAIRLFKESDSPD---E 266 (312)
T ss_pred ceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEecc-CCCEEEEEEecCCCC---C
Confidence 899999999999999999999999999765321 12466788899998 34566553 344455444332110 0
Q ss_pred cccCccccccc-cccCCC-ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEcc
Q 013338 335 HLLPVDLPDIV-SLTGSQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 335 ~~~~~~~~~~~-~~~~~~-~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
. ..+.+. .-..|. .|++++|+|. ..+|++++.| |.|++|.+.
T Consensus 267 p----~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD------G~v~~W~l~ 311 (312)
T KOG0645|consen 267 P----SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD------GIVNFWELE 311 (312)
T ss_pred c----hHHHHHhhhcccccccceEEEcCCCCCceeecCCC------ceEEEEEec
Confidence 0 112222 234566 8999999995 5778888777 999999875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=200.37 Aligned_cols=287 Identities=11% Similarity=0.127 Sum_probs=220.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+.+++-+.++.+|.+|.+++.|.+..||-.. +|+.+-+. .+|.+.|+++..+-+.+++++++.|.++++||+.+++.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~--nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSL--NGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEec--CCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 3468999999999999999999999999763 57777666 68999999999999989999999999999999996655
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC----CeEEEEEccCC-------C-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQG-------L- 246 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----g~v~vwd~~~~-------~- 246 (445)
...... +..|..+.|+++|++++.+..+. +.|.++|++.. +
T Consensus 87 la~~k~---------------------------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 87 LATWKT---------------------------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred EEEeec---------------------------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 544333 26899999999999888775431 57999999843 2
Q ss_pred ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 247 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
...+..+...++.+-|.|-+++|++|..||.|.+||+++++. .....|...|+.+++++|..++++++ .+..-..++
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCccceeee
Confidence 234555678999999999999999999999999999999865 34457888999999999999999764 334445555
Q ss_pred eccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-------eeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-------ISLSLIG 397 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-------~~~~~~~ 397 (445)
+. +...++++....+|++.+++|....++.|+.- +. .-|.-=+.+.|+. +....++
T Consensus 219 ~~-------------tl~v~Kty~te~PvN~aaisP~~d~VilgGGq--eA--~dVTTT~~r~GKFEArFyh~i~eEEig 281 (327)
T KOG0643|consen 219 VR-------------TLEVLKTYTTERPVNTAAISPLLDHVILGGGQ--EA--MDVTTTSTRAGKFEARFYHLIFEEEIG 281 (327)
T ss_pred cc-------------ceeeEEEeeecccccceecccccceEEecCCc--ee--eeeeeecccccchhhhHHHHHHHHHhc
Confidence 43 55667777777799999999988777776321 00 1122112222211 1122356
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+++|-++|++|+|+|+|+. .+.|-++|.|.+..|.
T Consensus 282 rvkGHFGPINsvAfhPdGks-----YsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 282 RVKGHFGPINSVAFHPDGKS-----YSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccccCcceeEECCCCcc-----cccCCCCceEEEEEec
Confidence 78899999999999999984 5667789999876543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=233.00 Aligned_cols=275 Identities=14% Similarity=0.179 Sum_probs=222.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..++|+|...+++++-.+|.|++||... +..+..+ .+|.++|+.++|+|+...++++|.|..|+||+...
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---- 82 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---- 82 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEeccc----
Confidence 4688999999999999999999999999965 5555555 47999999999999988888888899999999982
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
-+|+-++.+|- +.|..+.|++.-.+|+++|.| .+|+||+..+++++. +.+|...|.
T Consensus 83 ---------------------rrclftL~GHl-DYVRt~~FHheyPWIlSASDD-QTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 83 ---------------------RRCLFTLLGHL-DYVRTVFFHHEYPWILSASDD-QTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred ---------------------ceehhhhcccc-ceeEEeeccCCCceEEEccCC-CeEEEEeccCCceEEEEecCceEEE
Confidence 24666788896 899999999999999999999 699999999998865 567889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc------------------------------ccccCCCCCeeEEEECCCCC
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------------EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------------------------------~~~~~~~~~v~~~~~sp~~~ 308 (445)
|.+|+|....+++++.|.+|+|||+..-+. ..+.+|...|+-++|+|.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 999999999999999999999999864211 11337888899999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.|++|+ +|..+..|++... ..-++.+..+|. .|.++-|+|....+++.|+| ++|+|||+..
T Consensus 220 liVSG~-DDRqVKlWrmnet-----------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~k 281 (1202)
T KOG0292|consen 220 LIVSGA-DDRQVKLWRMNET-----------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTK 281 (1202)
T ss_pred eEEecC-CcceeeEEEeccc-----------cceeehhhhcccCCcceEEecCccceeEecCCC------ccEEEEeccc
Confidence 888763 3334444443211 233466778999 89999999999999999888 9999999987
Q ss_pred CCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 388 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
.+.+ +.++-..+.-+.++-+|..++ ++.|.++|-+
T Consensus 282 Rt~v-----~tfrrendRFW~laahP~lNL-----fAAgHDsGm~ 316 (1202)
T KOG0292|consen 282 RTSV-----QTFRRENDRFWILAAHPELNL-----FAAGHDSGMI 316 (1202)
T ss_pred ccce-----eeeeccCCeEEEEEecCCcce-----eeeecCCceE
Confidence 5544 456555677788888888764 5555544444
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=219.44 Aligned_cols=297 Identities=12% Similarity=0.136 Sum_probs=207.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc--ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.++++.|.|-+|++|+.|.+|++||+...+.. ..+.+.......|++++|++.|..||+.+.....+|+|-+...
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 36999999999999999999999999999643322 1222322345679999999999999999999999999977222
Q ss_pred CccccccccccccccccCCCCCceE-EEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc-eeeec--
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWT-LVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG-TPIRR-- 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~-~~~~~-- 252 (445)
..... .+ ++++ -+...++|. ..++|.+|+|+. ..+++++.| |++++||++..+. ..+..
T Consensus 248 ~~e~~-KG-------------DQYI~Dm~nTKGHi-a~lt~g~whP~~k~~FlT~s~D-gtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 248 IVEFS-KG-------------DQYIRDMYNTKGHI-AELTCGCWHPDNKEEFLTCSYD-GTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred eeeee-cc-------------chhhhhhhccCCce-eeeeccccccCcccceEEecCC-CcEEEEecCCchhheeEEeec
Confidence 11111 11 1111 123456776 899999999965 457888888 7999999986543 22222
Q ss_pred ----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc----ccCCCC--CeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 253 ----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSG--FVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 253 ----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
..-.++.++|+|+|+.||+|+.||.|.+|+..+..... -..|.. .|+++.||+||++|++-+ . +..
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-~---D~t 387 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG-F---DDT 387 (641)
T ss_pred cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc-C---CCc
Confidence 23468899999999999999999999999987655422 235655 899999999999999653 3 344
Q ss_pred EEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
+++|+.+. ..+++....+-- .-+.++|||+.++|++|..-.++.-.|.+++||..+-..+ ..+
T Consensus 388 LKvWDLrq---------~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-----~ki 453 (641)
T KOG0772|consen 388 LKVWDLRQ---------FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-----YKI 453 (641)
T ss_pred eeeeeccc---------cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-----EEe
Confidence 44554332 122333332221 5689999999999999876544333478999998864443 344
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.-....|..+.|+|.-+. +.+|..+|.+.+|
T Consensus 454 ~i~~aSvv~~~WhpkLNQ-----i~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQ-----IFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhh-----eeeecCCCceEEE
Confidence 434667788899987443 4556667776543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=223.38 Aligned_cols=306 Identities=15% Similarity=0.200 Sum_probs=227.3
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc--EEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~--l~~~~~dg~i~vw~~~~ 175 (445)
++.+|..++|+|.|.++|+|+.|+.++|||+.. +.....+ .+|.+.|.++.|+|+-.+ |++++.|+.+++||+..
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~--~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKN--GYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeC--CEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 457899999999999999999999999999953 5555555 689999999999998544 45666789999999983
Q ss_pred CCCccccccccccccccccC--------------------------------------------------------CCCC
Q 013338 176 PGNAASVRSGAASFLGALSR--------------------------------------------------------GPGT 199 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~~~~ 199 (445)
..........+.+.+..+.. +..+
T Consensus 181 ~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 181 KRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred CchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 32200000000000000000 0000
Q ss_pred c---eE--------------------------------------------------------------------------
Q 013338 200 R---WT-------------------------------------------------------------------------- 202 (445)
Q Consensus 200 ~---~~-------------------------------------------------------------------------- 202 (445)
. |.
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 0 00
Q ss_pred ----------------EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----eeeecCCCCeeEEE
Q 013338 203 ----------------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGFGGLSILK 261 (445)
Q Consensus 203 ----------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~~~~~~~v~~~~ 261 (445)
....+.+|. ..|.++....+|-+|++++.|+ ++++|.++.+.. ....+|.+.|.+++
T Consensus 341 VATNs~~lr~y~~~~~~c~ii~GH~-e~vlSL~~~~~g~llat~sKD~-svilWr~~~~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQIIPGHT-EAVLSLDVWSSGDLLATGSKDK-SVILWRLNNNCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred EEeCCCceEEEecCCCceEEEeCch-hheeeeeecccCcEEEEecCCc-eEEEEEecCCcchhhhhhhhcccccccceee
Confidence 011345664 7888888666778999999995 999999965543 23446889999999
Q ss_pred EcCCC-CEEEEEecCCeEEEEeCCCCCcc----------cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 262 WSPTG-DYFFAAKFDGTFYLWETNTWTSE----------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 262 ~sp~g-~~l~~~~~dg~v~iwd~~~~~~~----------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
++..+ .+|++++.|.++++|++...+.. ....|...|++++.+|+.++++++ +.+....+|+.+
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~----SqDktaKiW~le- 493 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG----SQDKTAKIWDLE- 493 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec----ccccceeeeccc-
Confidence 97654 57899999999999999873321 123789999999999999999977 345556666543
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
......++.+|. +|.++.|+|..+.||++|.| .+|+||.+.+..++ +++.||...|..+
T Consensus 494 ---------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD------~TvKIW~is~fSCl-----kT~eGH~~aVlra 553 (775)
T KOG0319|consen 494 ---------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGD------KTVKIWSISTFSCL-----KTFEGHTSAVLRA 553 (775)
T ss_pred ---------CceEEEEeeCCccceEEEEeccccceeEeccCC------ceEEEEEeccceee-----eeecCccceeEee
Confidence 456678899999 99999999999999999988 99999999985554 6899999999999
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|-.+|+. ++ -|-++|-+.+|.+-
T Consensus 554 ~F~~~~~q----li-S~~adGliKlWnik 577 (775)
T KOG0319|consen 554 SFIRNGKQ----LI-SAGADGLIKLWNIK 577 (775)
T ss_pred eeeeCCcE----EE-eccCCCcEEEEecc
Confidence 99998876 34 44589999998764
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=207.37 Aligned_cols=285 Identities=15% Similarity=0.211 Sum_probs=219.5
Q ss_pred CCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC---cEEEEecCCcEEEE
Q 013338 95 HLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG---RSLSVGCKGGICIW 171 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~---~l~~~~~dg~i~vw 171 (445)
.+++...|.++... +++|++|++||.++||+. .|+....+ .+|.++|.+++|.-... .+++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~---~Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL---KGKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEec---CCceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 34456678888877 789999999999999997 47776666 58999999999843223 48889999999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC------
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG------ 245 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~------ 245 (445)
.++.+..... +...-+||. ..|.+++..++|..+++|+.|. +|.+|+..+.
T Consensus 175 ~~~~~~~~~~---------------------~~~~~~GHk-~~V~sVsv~~sgtr~~SgS~D~-~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 175 KWNVGENKVK---------------------ALKVCRGHK-RSVDSVSVDSSGTRFCSGSWDT-MLKIWSVETDEEDELE 231 (423)
T ss_pred EecCchhhhh---------------------HHhHhcccc-cceeEEEecCCCCeEEeecccc-eeeecccCCCcccccc
Confidence 9884433222 222234785 8999999999999999999995 9999993211
Q ss_pred --------------------CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECC
Q 013338 246 --------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP 305 (445)
Q Consensus 246 --------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 305 (445)
....+.+|...|.++.|++ ...+.+++.|.+|+.||+.++....-...+..++++.++|
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP 310 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeeccc
Confidence 0134557889999999997 6778999999999999999999876666778899999999
Q ss_pred CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEE
Q 013338 306 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vw 383 (445)
..++|+++ +.+..+++|+.+..- ......++.+|. .|.++.|+|... .|++++.| +++++|
T Consensus 311 ~~~Ll~~g----ssdr~irl~DPR~~~-------gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D------~t~klW 373 (423)
T KOG0313|consen 311 LSKLLASG----SSDRHIRLWDPRTGD-------GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD------NTVKLW 373 (423)
T ss_pred ccceeeec----CCCCceeecCCCCCC-------CceeEEeeecchhhhhheecCCCCceEEEEEecC------CeEEEE
Confidence 99999877 446788888764321 233456788999 999999999765 56677777 999999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|+++.+ .++..+.+|.+.|.++.|... .++.-|--+.++++|.
T Consensus 374 DvRS~k----~plydI~~h~DKvl~vdW~~~------~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 374 DVRSTK----APLYDIAGHNDKVLSVDWNEG------GLIVSGGADNKLRIFK 416 (423)
T ss_pred EeccCC----CcceeeccCCceEEEEeccCC------ceEEeccCcceEEEec
Confidence 999744 234578899999999999643 2344454566666553
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=230.07 Aligned_cols=240 Identities=22% Similarity=0.406 Sum_probs=196.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|+++++++.|++++|||+. ..+..++++ .+|...|++++|+|+++.+++++.|++|+|||+..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---- 277 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---- 277 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----
Confidence 479999999999999999999999999993 345566666 58999999999999997888888899999999983
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCC-
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFG- 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~- 255 (445)
+ .+...+.+|. ..|++++|++++++|++++.| |.|++||+.++.. ..+..+..
T Consensus 278 -----~----------------~~~~~l~~hs-~~is~~~f~~d~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 278 -----G----------------ECVRKLKGHS-DGISGLAFSPDGNLLVSASYD-GTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred -----C----------------eEEEeeeccC-CceEEEEECCCCCEEEEcCCC-ccEEEEECCCCceeeeecccCCCCC
Confidence 2 4677788996 799999999999999999998 7999999999983 23344433
Q ss_pred -CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCC---eeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 256 -GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF---VTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 256 -~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~---v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.+++++|+|++++|++++.|+.+++||+..+.. ..+..|... +.+...++.+++++++. .+..+.+|+..
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~----~d~~v~~~~~~- 409 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS----EDGSVYVWDSS- 409 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe----CCceEEEEeCC-
Confidence 589999999999999999999999999998876 555566553 44556688999999773 34555555443
Q ss_pred CccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 331 SLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+...+..+.+| . .+..++|+|...++++++.+.+ +.+++|..+
T Consensus 410 ---------s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d----~~~~~w~~~ 454 (456)
T KOG0266|consen 410 ---------SGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGD----GLIRLWKYD 454 (456)
T ss_pred ---------ccchhhhhcCCCCCceeccccCCCcCeeeecCcCCC----ceEEEecCC
Confidence 45667788888 5 7899999999999999885432 899999865
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-26 Score=192.65 Aligned_cols=262 Identities=14% Similarity=0.211 Sum_probs=205.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec--CCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~--dg~i~vw~~~~~ 176 (445)
...|.++.|+++|.+|++++.|.+++|||.. +++..+++. .+.-.|..++|......++.++. |.+|+..++.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~--~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-- 88 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSL--SGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-- 88 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcC--CCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEee--
Confidence 4579999999999999999999999999985 477777764 35567888999766567777766 7899988887
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
..+.++.+.||. ..|.+++.+|-+..+++++.| ++|++||++..+++-+....+
T Consensus 89 -----------------------dNkylRYF~GH~-~~V~sL~~sP~~d~FlS~S~D-~tvrLWDlR~~~cqg~l~~~~- 142 (311)
T KOG1446|consen 89 -----------------------DNKYLRYFPGHK-KRVNSLSVSPKDDTFLSSSLD-KTVRLWDLRVKKCQGLLNLSG- 142 (311)
T ss_pred -----------------------cCceEEEcCCCC-ceEEEEEecCCCCeEEecccC-CeEEeeEecCCCCceEEecCC-
Confidence 224788899997 899999999999999999999 499999999887766554332
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---cc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
-..++|+|+|-++|++.....|++||++.....+ +. ......+.+.|||||++|+.+... +.+..++-.
T Consensus 143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf---- 217 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAF---- 217 (311)
T ss_pred CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEcc----
Confidence 3357999999999999988899999999865422 11 345678999999999999987543 445555543
Q ss_pred CccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC-CCCC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDN 405 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~ 405 (445)
++..+.++..+. --.+.+|+||++++++|+.| |+|.+|++++++.+ ..+.+ +..+
T Consensus 218 ---------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d------g~i~vw~~~tg~~v-----~~~~~~~~~~ 277 (311)
T KOG1446|consen 218 ---------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD------GTIHVWNLETGKKV-----AVLRGPNGGP 277 (311)
T ss_pred ---------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC------CcEEEEEcCCCcEe-----eEecCCCCCC
Confidence 334444554444 12578899999999999887 99999999998876 35565 6888
Q ss_pred CCceeEeecCC
Q 013338 406 PKPVAFSFHDK 416 (445)
Q Consensus 406 v~~v~~spdg~ 416 (445)
+.++.|.|.-.
T Consensus 278 ~~~~~fnP~~~ 288 (311)
T KOG1446|consen 278 VSCVRFNPRYA 288 (311)
T ss_pred ccccccCCcee
Confidence 99999998743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=211.74 Aligned_cols=295 Identities=11% Similarity=0.115 Sum_probs=227.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|+++.|+|..+.|++++.|++++||.++......+..+. -...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47999999999999999999999999999866555555543 2567899999999988 666777778999999973322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
. .+..+.++....+.....||++++|+..+.. |.|.+....+++.+....-.+.|.
T Consensus 293 ~-----------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-G~I~lLhakT~eli~s~KieG~v~ 348 (514)
T KOG2055|consen 293 T-----------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-GHIHLLHAKTKELITSFKIEGVVS 348 (514)
T ss_pred c-----------------------cccCCCCcccchhheeEecCCCCeEEEcccC-ceEEeehhhhhhhhheeeeccEEe
Confidence 1 1222344444678889999999999999998 799999999998888888889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCC--CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++|+.+++.|++++.+|.|++||++...+.......+ .-++++.++++.++|+|+. -+++++++......
T Consensus 349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~--- 421 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFA--- 421 (514)
T ss_pred eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhc---
Confidence 99999999999999999999999999987743332223 3467888999999997733 35555554322111
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
....+++.++..-. .|+++.|+||++.||.+|.... ..+++-.+.+.....-.|.. ...-+.|++++|||.|
T Consensus 422 -s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k----nalrLVHvPS~TVFsNfP~~--n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 422 -STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK----NALRLVHVPSCTVFSNFPTS--NTKVGHVTCMAFSPNS 494 (514)
T ss_pred -cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc----cceEEEeccceeeeccCCCC--CCcccceEEEEecCCC
Confidence 11445666666656 8999999999999999987543 78999998875554332221 2334568999999987
Q ss_pred CCCCCCeEEEEecCeeeEeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
-| |++|-+.|+|.+|.+-
T Consensus 495 G~-----lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 GY-----LAVGNEAGRVHLFKLH 512 (514)
T ss_pred ce-----EEeecCCCceeeEeec
Confidence 65 9999999999999875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=224.55 Aligned_cols=280 Identities=12% Similarity=0.178 Sum_probs=227.4
Q ss_pred CCeeEEEE-ccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSW-HQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~-sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|..|+| .|+.++||.+++.+.+++++.... . +.+..+|...|.++....+|-.|++++.|.++++|.++....
T Consensus 324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~--c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~ 399 (775)
T KOG0319|consen 324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTS--Y--CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS 399 (775)
T ss_pred hhheeeeecCCccceEEEEeCCCceEEEecCCC--c--eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence 36888776 578899999999999999987432 2 335579999999999656656788888899999999852221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc----e-----
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG----T----- 248 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~----~----- 248 (445)
. ..++....+|. ..|.+++++..+ ..|+++|.| +++++|++...+. .
T Consensus 400 ~---------------------~~~~a~~~gH~-~svgava~~~~~asffvsvS~D-~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 400 K---------------------SLCVAQANGHT-NSVGAVAGSKLGASFFVSVSQD-CTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred h---------------------hhhhhhhcccc-cccceeeecccCccEEEEecCC-ceEEEecCCCcccccccceehhh
Confidence 1 12344466786 899999997744 568889999 6999999986321 1
Q ss_pred -eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 249 -PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 249 -~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
....|...|++++++|+.+.+++|+.|++.+||++..... ..+.+|...+.++.|+|..+.++++ ++|.++.+|.+.
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is 535 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC-SGDKTVKIWSIS 535 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec-cCCceEEEEEec
Confidence 1235889999999999999999999999999999997666 5788999999999999999999866 444555555543
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 405 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (445)
+..+++++.||. .|..+.|-.+|+.|++++.| |-+++|+++++++. +.+.+|.+.
T Consensus 536 -------------~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad------GliKlWnikt~eC~-----~tlD~H~Dr 591 (775)
T KOG0319|consen 536 -------------TFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD------GLIKLWNIKTNECE-----MTLDAHNDR 591 (775)
T ss_pred -------------cceeeeeecCccceeEeeeeeeCCcEEEeccCC------CcEEEEeccchhhh-----hhhhhccce
Confidence 778999999999 99999999999999999988 99999999987765 588899999
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|++++-+|...+ +.-|-.||+|.+|.
T Consensus 592 vWaL~~~~~~~~-----~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 592 VWALSVSPLLDM-----FVTGGGDGRIIFWK 617 (775)
T ss_pred eEEEeecCccce-----eEecCCCeEEEEee
Confidence 999999998764 45566799998874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=218.46 Aligned_cols=276 Identities=12% Similarity=0.124 Sum_probs=225.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.++.|+|...+++++-.+|.+.||+.++ ....+.+ .-..-+|++..|-+.-+.+++++.|..|+||+.++
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyet--qtmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--- 86 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYET--QTMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--- 86 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEeccc--ceeeeee-eecccchhhheeeeccceEEEecCCceEEEEeccc---
Confidence 45799999999999999999999999999864 3344444 33677899999988867788888889999999982
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--ceeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~~~~~~~~~~ 256 (445)
...++.+..|. +.|++++.+|.-.++++++.| -+|++||.+.+= .+.+.+|...
T Consensus 87 ----------------------~ekV~~FeAH~-DyIR~iavHPt~P~vLtsSDD-m~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 87 ----------------------GEKVKTFEAHS-DYIRSIAVHPTLPYVLTSSDD-MTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ----------------------ceeeEEeeccc-cceeeeeecCCCCeEEecCCc-cEEEEeeccCceeeeeEEcCcceE
Confidence 24667788896 899999999999999999999 599999998652 2556788999
Q ss_pred eeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCC--CeEEEEEcCCceEEEEEeccCCCCc
Q 013338 257 LSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 257 v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~--~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
|.+++|+| |.+.+++++.|++|+||.+.+..+ .++.+|...|+++.|-+-| .+|+++. + +..+++|+-.
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-D---D~tiKvWDyQ--- 215 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-D---DLTIKVWDYQ--- 215 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-C---CceEEEeecc---
Confidence 99999999 477899999999999999988776 6788999999999998755 5787663 3 3445555433
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
+..+++++.+|. .|..+.|+|.-..+++||+| |+++||+..+-++. ..+.-..+.|++++-
T Consensus 216 -------tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED------GTvriWhs~Ty~lE-----~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 216 -------TKSCVQTLEGHTNNVSFVFFHPELPIIISGSED------GTVRIWNSKTYKLE-----KTLNYGLERVWCIAA 277 (794)
T ss_pred -------hHHHHHHhhcccccceEEEecCCCcEEEEecCC------ccEEEecCcceehh-----hhhhcCCceEEEEee
Confidence 678899999999 99999999999999999998 99999998875443 233334567888886
Q ss_pred eecCCCCCCCeEEEEecCeeeEe
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
.+.++ .+++|++.|.|.+
T Consensus 278 ~k~~~-----~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 278 HKGDG-----KIAVGFDEGSVTV 295 (794)
T ss_pred cCCCC-----eEEEeccCCcEEE
Confidence 66544 3788888887764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=207.64 Aligned_cols=276 Identities=15% Similarity=0.157 Sum_probs=216.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-------cCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-------SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-------~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+.|..|||||++|++|+.||.|.+|+... |+..+.+. --+..+|.|+.||.|...+++++.||.|++|.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~--GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT--GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhcc--chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 478999999999999999999999999854 54333221 137889999999999888888888999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~ 251 (445)
.++... +.+. .|. ..|+|+.||.|+..+++++.| .++++.-+.+|++. .+.
T Consensus 293 ~tG~Cl-------------------------RrFdrAHt-kGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 293 ETGQCL-------------------------RRFDRAHT-KGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred ecchHH-------------------------HHhhhhhc-cCeeEEEEccCcchhhccccc-ceEEEeccccchhHHHhc
Confidence 955433 3343 454 899999999999999999999 59999999999885 466
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
+|.+.|+...|.++|..+++++.||+|++|+..+.++ .++. +...+|+++-.-|.+.--++.+.....+.++.+
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--- 422 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--- 422 (508)
T ss_pred CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec---
Confidence 7889999999999999999999999999999999988 3333 455678888877765433334455566777765
Q ss_pred CCCccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
.+..++.+.... ...+.+.||.|.++++.++| +.++.|.+.+|++. .++.-|..
T Consensus 423 -----------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED------~vlYCF~~~sG~LE-----~tl~VhEk 480 (508)
T KOG0275|consen 423 -----------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED------GVLYCFSVLSGKLE-----RTLPVHEK 480 (508)
T ss_pred -----------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC------cEEEEEEeecCcee-----eeeecccc
Confidence 455556555432 46778899999999999888 99999999998876 46677888
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.|-.++-+|..+. ++.=.++|.+.+|
T Consensus 481 dvIGl~HHPHqNl-----lAsYsEDgllKLW 506 (508)
T KOG0275|consen 481 DVIGLTHHPHQNL-----LASYSEDGLLKLW 506 (508)
T ss_pred cccccccCcccch-----hhhhcccchhhhc
Confidence 8889999888764 2222355655443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=221.11 Aligned_cols=278 Identities=13% Similarity=0.141 Sum_probs=194.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccC--------CCCccee--EEecCCCCCeeEEEECc-CCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED--------SEGKDAC--ILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~--------~~~~~~~--~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~ 169 (445)
.|+....++|+..+++++.+.....|+... ..|+... ....+|.+.|++++|+| ++..|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 355555666765566666666556665321 1121111 12358999999999999 767788888999999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCce
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
+|++...+..... ...+..+.+|. ..|.+++|+|++ ++|++++.| |+|++||+.+++..
T Consensus 102 IWdi~~~~~~~~~------------------~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~D-gtVrIWDl~tg~~~ 161 (493)
T PTZ00421 102 GWGIPEEGLTQNI------------------SDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGAD-MVVNVWDVERGKAV 161 (493)
T ss_pred EEecCCCcccccc------------------CcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCC-CEEEEEECCCCeEE
Confidence 9999743221110 12345677886 899999999975 689999999 79999999988764
Q ss_pred e-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCC-eeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 249 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 249 ~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
. +..|...|.+++|+|+|++|++++.|++|++||+++++. ..+..|... ...+.|.+++..+++++.....++.+.+
T Consensus 162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 4 445788999999999999999999999999999999876 445566554 4567899988888766533334566666
Q ss_pred ccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEc-CCCcccceEEEEEEccCCCeeeeeeeeeeeCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 402 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 402 (445)
|+.... ...+.....+. .+....|++++++|++++. | +.|++||+.+++++.. .-..+
T Consensus 242 WDlr~~---------~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD------g~Iriwdl~~~~~~~~----~~~~s 302 (493)
T PTZ00421 242 WDTRKM---------ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE------GNIRCFELMNERLTFC----SSYSS 302 (493)
T ss_pred EeCCCC---------CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC------CeEEEEEeeCCceEEE----eeccC
Confidence 664311 11222222222 4666789999999998875 5 8999999998876532 11235
Q ss_pred CCCCCceeEeecCCC
Q 013338 403 GDNPKPVAFSFHDKF 417 (445)
Q Consensus 403 ~~~v~~v~~spdg~~ 417 (445)
..++..++|.|.-..
T Consensus 303 ~~~~~g~~~~pk~~~ 317 (493)
T PTZ00421 303 VEPHKGLCMMPKWSL 317 (493)
T ss_pred CCCCcceEecccccc
Confidence 567889999986443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=226.18 Aligned_cols=243 Identities=13% Similarity=0.228 Sum_probs=191.5
Q ss_pred cCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccC----------------------------CCC-----c------
Q 013338 94 VHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED----------------------------SEG-----K------ 134 (445)
Q Consensus 94 ~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~----------------------------~~~-----~------ 134 (445)
.+..+...|+++.||+||++||+|+.|+.|+||.+-. ... +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 3335567899999999999999999999999998754 000 0
Q ss_pred -----c-------------eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCC
Q 013338 135 -----D-------------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 135 -----~-------------~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
. ......+|.+.|.+|.||.+ ++||+++.|.+|++|++...
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-------------------- 400 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-------------------- 400 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc--------------------
Confidence 0 00113479999999999999 89999999999999999833
Q ss_pred CCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD 275 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d 275 (445)
.|++.+. | ..-|+|++|+| |.+++++|+-| |.|+||++...+.........-|++++|.|||+..++|+.+
T Consensus 401 -----~CL~~F~-H-ndfVTcVaFnPvDDryFiSGSLD-~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 401 -----ECLKVFS-H-NDFVTCVAFNPVDDRYFISGSLD-GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred -----ceeeEEe-c-CCeeEEEEecccCCCcEeecccc-cceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 2444443 4 38999999999 88999999999 79999999998888888888999999999999999999999
Q ss_pred CeEEEEeCCCCCccc---cc------CCCCCeeEEEECCCCC--eEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 276 GTFYLWETNTWTSEP---WS------STSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 276 g~v~iwd~~~~~~~~---~~------~~~~~v~~~~~sp~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
|.+++|++...+... +. .....|+.+.|.|... .|+++ .|.++++++.. +...+
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~~-------------~~~lv 537 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDGR-------------DKDLV 537 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--CCCceEEEecc-------------chhhh
Confidence 999999999876521 11 1123799999998655 44443 45666666653 34456
Q ss_pred ccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 345 VSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 345 ~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+++.. .-....|+.||++|+++++| ..|++|+..
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD------s~VYiW~~~ 576 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDGKHIVSASED------SWVYIWKND 576 (712)
T ss_pred hhhcccccCCcceeeeEccCCCEEEEeecC------ceEEEEeCC
Confidence 6677655 45678899999999999987 899999974
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-28 Score=206.35 Aligned_cols=237 Identities=17% Similarity=0.286 Sum_probs=202.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..++|+..|++||+++.|-.+++||.+.. .++++.. .+|...|.+++|-|.|.++++++.|.+|+.|++.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~----- 223 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD----- 223 (406)
T ss_pred cceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-----
Confidence 36999999999999999999999999998642 3333333 5899999999999999999999999999999998
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
++ .++.++.+|. ..|..++.+.||..+++++.| .+|++|-+.++++.. +..|+..|.
T Consensus 224 ----tg----------------~cv~t~~~h~-ewvr~v~v~~DGti~As~s~d-qtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 ----TG----------------YCVKTFPGHS-EWVRMVRVNQDGTIIASCSND-QTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred ----cc----------------eeEEeccCch-HhEEEEEecCCeeEEEecCCC-ceEEEEEeccchhhhhhhccccceE
Confidence 33 5788899997 799999999999999999999 599999999987754 556888999
Q ss_pred EEEEcCC---------------CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 259 ILKWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 259 ~~~~sp~---------------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
+++|.|. ++++.+++.|++|++||+.++.+ .++.+|.+.|..++|+|.|+||+++.+ +..+++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD-Dktlrv 360 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD-DKTLRV 360 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec-CCcEEE
Confidence 9999772 25899999999999999999988 788899999999999999999997644 344555
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
|++. +..+..++..|. -+++++|+.+-.++++|+-| .++++|.-
T Consensus 361 wdl~-------------~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd------qt~KvwEc 405 (406)
T KOG0295|consen 361 WDLK-------------NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWEC 405 (406)
T ss_pred EEec-------------cceeeeccCCCcceeEEEecCCCCceEEecccc------ceeeeeec
Confidence 5443 566777788888 89999999999999999988 99999974
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=197.69 Aligned_cols=288 Identities=16% Similarity=0.215 Sum_probs=199.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-CCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~ 177 (445)
..|++++|+.||+.||+++.|+.|+||+++.-+.+.-+.+.. -..+..+.+.|+||.+.+++.... .++++|.+....
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 459999999999999999999999999986533322111111 122356789999998877766654 789999876332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.-...... -.|.-...-+.|. ..+..+-..-++++|++++.| ..|.+|+++......+......-
T Consensus 167 dG~~~~~~-------------v~~D~~~f~~kh~-v~~i~iGiA~~~k~imsas~d-t~i~lw~lkGq~L~~idtnq~~n 231 (420)
T KOG2096|consen 167 DGSGSHHF-------------VHIDNLEFERKHQ-VDIINIGIAGNAKYIMSASLD-TKICLWDLKGQLLQSIDTNQSSN 231 (420)
T ss_pred cCCCCccc-------------ccccccccchhcc-cceEEEeecCCceEEEEecCC-CcEEEEecCCceeeeeccccccc
Confidence 21100000 0111111223333 566677777889999999999 49999999944444455556667
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCC---CCCc------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETN---TWTS------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~---~~~~------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
+..+.||+|+++++++---.|++|.+- .++. ..+.+|...|..++|+++.+.+++. .+++.|++|+.
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv----SkDG~wriwdt 307 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV----SKDGKWRIWDT 307 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE----ecCCcEEEeec
Confidence 788999999999999998899999873 2222 3567999999999999999999977 55788888876
Q ss_pred CCCccccccCcccccc-ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 329 PPSLDAHLLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
.........+...+.- ..+.... ....++.+|+|+.||.++ + ..+++|..++|+... ..-..|+..|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-g------s~l~~~~se~g~~~~----~~e~~h~~~I 376 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-G------SDLKVFASEDGKDYP----ELEDIHSTTI 376 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-C------CceEEEEcccCccch----hHHHhhcCce
Confidence 4433322211111111 1111112 345899999999998765 3 579999999887652 1233689999
Q ss_pred CceeEeecCCC
Q 013338 407 KPVAFSFHDKF 417 (445)
Q Consensus 407 ~~v~~spdg~~ 417 (445)
.+++|+++|+|
T Consensus 377 s~is~~~~g~~ 387 (420)
T KOG2096|consen 377 SSISYSSDGKY 387 (420)
T ss_pred eeEEecCCCcE
Confidence 99999999998
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=197.69 Aligned_cols=286 Identities=13% Similarity=0.132 Sum_probs=210.6
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+..|.+++||| ...+++.+|.|++||+|+++.. |.........|.++|.+++|+.||.++++++.|+.+++||+.+.+
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-GQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecC-CcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 35699999999 5566768899999999999853 554444556799999999999999999999999999999998442
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC--eEEEEEecCCeEEEEEccCCCceeeecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
...+..|. ++|.++.|-+... .|++|+.|+ +|+.||.+............
T Consensus 106 --------------------------~~~v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 106 --------------------------VSQVAAHD-APVKTCHWVPGMNYQCLVTGSWDK-TLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred --------------------------eeeeeecc-cceeEEEEecCCCcceeEeccccc-ceeecccCCCCeeeeeeccc
Confidence 22244564 8999999977554 899999995 99999999887777777778
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.++++.. -...++++..++.|.+|+++++..+ .....+-.+++++..++....+.|.- +++..+-.+.+..+..
T Consensus 158 RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 158 RVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-EGRVAIQYIDDPNPKD 234 (347)
T ss_pred eeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-cceEEEEecCCCCccC
Confidence 8887765 3457888999999999999876542 22245567889998888777666532 2444444443321110
Q ss_pred cccccCcccccccc---ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 333 DAHLLPVDLPDIVS---LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 333 ~~~~~~~~~~~~~~---~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
....++-+. ..+.- .|++++|+|....|++++.| |++.+||-+....+ .....|..+|++
T Consensus 235 -----nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD------Gtf~FWDkdar~kL-----k~s~~~~qpItc 298 (347)
T KOG0647|consen 235 -----NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD------GTFSFWDKDARTKL-----KTSETHPQPITC 298 (347)
T ss_pred -----ceeEEEeccCCCCCCceEEecceEeecccceEEEecCC------ceEEEecchhhhhh-----hccCcCCCccce
Confidence 001222221 11112 68999999999999999888 99999998864443 355678999999
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeE
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
.+|+.+|.+.+.+ +.-.|+.|+..
T Consensus 299 c~fn~~G~ifaYA-~gYDWSkGhe~ 322 (347)
T KOG0647|consen 299 CSFNRNGSIFAYA-LGYDWSKGHEG 322 (347)
T ss_pred eEecCCCCEEEEE-eeccccccccc
Confidence 9999999975433 34457888876
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=198.04 Aligned_cols=279 Identities=15% Similarity=0.186 Sum_probs=227.9
Q ss_pred CCeeEEEEc---cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWH---QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~s---p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+|-.++|| |+|-+|++++.|+.-.+-+-+ +|..+-++ .+|.+.|++...+.+..+-++++.|=+.++||.-++
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~--tgdwigtf-eghkgavw~~~l~~na~~aasaaadftakvw~a~tg 91 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGD--TGDWIGTF-EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG 91 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCC--CCCcEEee-eccCcceeeeecCchhhhhhhhcccchhhhhhhhhh
Confidence 467788887 589999999999998887764 47777777 589999999999998666666777888999998755
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~ 254 (445)
.....+ . | ..-|.+++|+.|.++|++|+.++ .++|||++..+. ..+.+|.
T Consensus 92 delhsf-------------------------~-h-khivk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ght 143 (334)
T KOG0278|consen 92 DELHSF-------------------------E-H-KHIVKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHT 143 (334)
T ss_pred hhhhhh-------------------------h-h-hheeeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCC
Confidence 443322 1 3 25799999999999999999995 999999997755 4466789
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+.|..+.|....+.|++++.|++||+||.++++..+....+.+|+++.++++|++|.++.. ..+.+|+..
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak----- 213 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK----- 213 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-----ceeEEeccc-----
Confidence 9999999999999999999999999999999998666667889999999999999987744 345555443
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....++.++-...|.+...+|+...+++|++| ..++.||..+++.+.. ..++|.++|-+|.||||
T Consensus 214 -----sf~~lKs~k~P~nV~SASL~P~k~~fVaGged------~~~~kfDy~TgeEi~~----~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 214 -----SFGLLKSYKMPCNVESASLHPKKEFFVAGGED------FKVYKFDYNTGEEIGS----YNKGHFGPVHCVRFSPD 278 (334)
T ss_pred -----cccceeeccCccccccccccCCCceEEecCcc------eEEEEEeccCCceeee----cccCCCCceEEEEECCC
Confidence 44555555555579999999999999888877 9999999999887631 24789999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|. +.+.|.++|.|.+|....
T Consensus 279 GE-----~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 279 GE-----LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred Cc-----eeeccCCCceEEEEEecC
Confidence 87 478999999999987653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=213.68 Aligned_cols=277 Identities=13% Similarity=0.182 Sum_probs=214.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|..+.|-++...|++|+.|..|++|+....+.....++ .+..++|+++.|.+++.++++.+.|+.+++|+++
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd---- 249 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD---- 249 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCCCceEEeecCCCceeeeecc----
Confidence 34799999999999999999999999999864332233333 5678899999999999999999999999999998
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
...+..++.+|. +.|+++.|......+++++.|. +|++||+....+....-....+.
T Consensus 250 ---------------------~~r~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DR-tiK~WDl~k~~C~kt~l~~S~cn 306 (459)
T KOG0288|consen 250 ---------------------SLRLRHTLSGHT-DKVTAAKFKLSHSRVVSGSADR-TIKLWDLQKAYCSKTVLPGSQCN 306 (459)
T ss_pred ---------------------chhhhhhhcccc-cceeeehhhccccceeeccccc-hhhhhhhhhhheecccccccccc
Confidence 224556688886 8999999988776799999995 99999999987766555556777
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (445)
+|+.+ ...++++..|++|++||.++..+.......+.|+++..++++..|+++ ..+..+..+++...
T Consensus 307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~---------- 373 (459)
T KOG0288|consen 307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK---------- 373 (459)
T ss_pred ceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc----------
Confidence 77776 567889999999999999998886655666699999999999999976 44455556555321
Q ss_pred ccccccccccC-----CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC--CCCceeE
Q 013338 339 VDLPDIVSLTG-----SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAF 411 (445)
Q Consensus 339 ~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~v~~v~~ 411 (445)
.....+.. ....+.+.|||++.|+|+||.| |.|+||++.++++.+ .+..... .|++++|
T Consensus 374 ---eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d------gsv~iW~v~tgKlE~-----~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 374 ---EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD------GSVYIWSVFTGKLEK-----VLSLSTSNAAITSLSW 439 (459)
T ss_pred ---cEEEEeeccccccccccceeEECCCCceeeeccCC------CcEEEEEccCceEEE-----EeccCCCCcceEEEEE
Confidence 22222221 1148999999999999999998 999999999988763 3333222 5999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
+|.|.+ +|++. .++.+.+|
T Consensus 440 ~~sG~~----Llsad-k~~~v~lW 458 (459)
T KOG0288|consen 440 NPSGSG----LLSAD-KQKAVTLW 458 (459)
T ss_pred cCCCch----hhccc-CCcceEec
Confidence 999886 34332 45555443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=216.77 Aligned_cols=260 Identities=11% Similarity=0.111 Sum_probs=183.8
Q ss_pred EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCCCCCccccccccccccccccC
Q 013338 117 ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR 195 (445)
Q Consensus 117 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
|+.++.+++|+... ...+.. ..+|.+.|.+++|+|+ +..|++++.|+.|+||++...........
T Consensus 50 GG~~gvI~L~~~~r--~~~v~~-L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~----------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMR--KPPVIK-LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK----------- 115 (568)
T ss_pred CCceeEEEeeecCC--CceEEE-EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-----------
Confidence 45678899998743 333333 3689999999999997 56778888899999999974322110000
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeE-EEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 274 (445)
.....+.+|. ..|.+++|+|++..+ ++++.| |+|++||+++++......+...|.+++|+|+|++|++++.
T Consensus 116 ------~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~D-gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 116 ------DPQCILKGHK-KKISIIDWNPMNYYIMCSSGFD-SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred ------cceEEeecCC-CcEEEEEECCCCCeEEEEEeCC-CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEec
Confidence 1234467775 799999999998765 678888 7999999998876554556788999999999999999999
Q ss_pred CCeEEEEeCCCCCc-ccccCCCCCeeE-----EEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc
Q 013338 275 DGTFYLWETNTWTS-EPWSSTSGFVTG-----ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348 (445)
Q Consensus 275 dg~v~iwd~~~~~~-~~~~~~~~~v~~-----~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
|+.|+|||+++++. ..+..|.+.+.. ..|++++.+|++++.++...+.+.+|+... ...++..+.
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~---------~~~pl~~~~ 258 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN---------TTSALVTMS 258 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC---------CCCceEEEE
Confidence 99999999999876 456677765432 345689899888765544445667776431 122333332
Q ss_pred CCC--cc-ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 349 GSQ--GI-EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 349 ~~~--~v-~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.+. .+ .-....++|.++++|+.| +.|++|++..+.+.. +..+. +..++.+++|.|+...
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD------~tIr~~e~~~~~~~~---l~~~~-s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGD------GNCRYYQHSLGSIRK---VNEYK-SCSPFRSFGFLPKQIC 320 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECC------CeEEEEEccCCcEEe---ecccc-cCCCccceEEcccccc
Confidence 222 22 223334568888888877 999999998765432 22222 5678899999998653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=191.14 Aligned_cols=283 Identities=14% Similarity=0.285 Sum_probs=212.1
Q ss_pred CeeEEEEccC-CCEEEEEE-------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecCCcEEEE
Q 013338 101 DLQGVSWHQH-KHIVAFIS-------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIW 171 (445)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~-------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw 171 (445)
.-.++.|||- ..+||++. ..|.+.|.++..+.+-..... ..-.+.+..++|++.... +++++.||.+++|
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQS-YDTEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEe-eecccceeEeeecCCCcceEEEEecCceEEEe
Confidence 3468889983 33444432 578888888853333322222 246778999999987554 5666779999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-ee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TP 249 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~-~~ 249 (445)
|+..... .+..++.|. ..|.++.|++ +++.+++++.| |+|++|+...++. ..
T Consensus 89 d~~~~s~------------------------Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD-~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 89 DLTMPSK------------------------PIHKFKEHK-REVYSVDWNTVRRRIFLTSSWD-GTIKLWDPNRPNSVQT 142 (311)
T ss_pred ccCCCCc------------------------chhHHHhhh-hheEEeccccccceeEEeeccC-CceEeecCCCCcceEe
Confidence 9653222 344577785 8999999998 56678888999 7999999987665 45
Q ss_pred eecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCC-cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 250 IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
+.+|...|...+|+|. .+.+++++.|+++++||++... ...+..|...+.++.|+.-...+++.++.++.++.|++..
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN 222 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence 6678899999999995 7889999999999999998643 3567789999999999998888877777766666666654
Q ss_pred CCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 405 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (445)
. ..++..+.+|. .|..++|||.. ..||+++.| -++++||...+.-. +.+..-|++.
T Consensus 223 ~------------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD------mT~riw~~~~~ds~----~e~~~~HtEF 280 (311)
T KOG0277|consen 223 L------------RTPLFELNGHGLAVRKVKFSPHHASLLASASYD------MTVRIWDPERQDSA----IETVDHHTEF 280 (311)
T ss_pred c------------cccceeecCCceEEEEEecCcchhhHhhhcccc------ceEEecccccchhh----hhhhhccceE
Confidence 2 24477788999 99999999975 678888877 99999999854322 3456678999
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|-.+.||+- ..+.+.++|| ++.+.+|.
T Consensus 281 v~g~Dws~~---~~~~vAs~gW-De~l~Vw~ 307 (311)
T KOG0277|consen 281 VCGLDWSLF---DPGQVASTGW-DELLYVWN 307 (311)
T ss_pred Eeccccccc---cCceeeeccc-ccceeeec
Confidence 999999986 3445666677 56666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=208.40 Aligned_cols=229 Identities=15% Similarity=0.238 Sum_probs=189.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++.|-+..+++++|+.|..|+||+.+ +++.+..+ ..|.+-|++++.+|...++++++.|-.|++|+.+
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnyn--t~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we----- 127 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYN--TGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE----- 127 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecc--cceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeecc-----
Confidence 478999999999999999999999999995 46666666 5799999999999998899999999999999997
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v 257 (445)
..|.+..++.+|. ..|.+++|+| |.+.+++++.| ++|++|.+.+..+ ..+.+|...|
T Consensus 128 -------------------~~wa~~qtfeGH~-HyVMqv~fnPkD~ntFaS~sLD-rTVKVWslgs~~~nfTl~gHekGV 186 (794)
T KOG0276|consen 128 -------------------NEWACEQTFEGHE-HYVMQVAFNPKDPNTFASASLD-RTVKVWSLGSPHPNFTLEGHEKGV 186 (794)
T ss_pred -------------------CceeeeeEEcCcc-eEEEEEEecCCCccceeeeecc-ccEEEEEcCCCCCceeeeccccCc
Confidence 3689999999996 7999999999 77889999999 5999999987766 5677899999
Q ss_pred eEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+|+.+-+- ..+|++|+.|.+|+|||..+.++ +++.+|...|..+.|+|.=..+++| +.++.+++|...
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg----sEDGTvriWhs~----- 257 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG----SEDGTVRIWNSK----- 257 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe----cCCccEEEecCc-----
Confidence 99999874 46999999999999999999998 7788999999999999999998876 335666666543
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
+.+...++.-.. .+++++-.+.++.++.|...
T Consensus 258 -----Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 258 -----TYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred -----ceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 222222333222 57777777766666666544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=214.24 Aligned_cols=241 Identities=20% Similarity=0.280 Sum_probs=198.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+..|+++.|+++|.+||+|..+|.|.|||... .+....+...|...|-+++|+. ..+.+++.++.|..+|++....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhh--ccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchh
Confidence 35799999999999999999999999999853 5555555444999999999993 4677777889999999984433
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v 257 (445)
... .+.+|. ..|..+.|++|++++|+|+.|+ .+.|||....+. ..+..|.+.|
T Consensus 293 ~~~------------------------~~~~H~-qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 293 VVS------------------------TLQGHR-QEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred hhh------------------------hhhccc-ceeeeeEECCCCCeeccCCCcc-ceEeccCCCccccEEEeccceee
Confidence 221 255665 8999999999999999999995 999999965444 6677899999
Q ss_pred eEEEEcCC-CCEEEEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPT-GDYFFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~-g~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..++|+|- ...||+|+ .|++|++||..+++..........|.++.|++..+-|+++.+.. ...+.+|..+
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s--~n~i~lw~~p----- 419 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYS--ENQITLWKYP----- 419 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCC--CCcEEEEecc-----
Confidence 99999995 66777764 59999999999999887778889999999999998888765432 2356666543
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
..+.+..+.+|. .|..++++|||..+++|+.| .++++|++-.
T Consensus 420 -----s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D------ETlrfw~~f~ 462 (484)
T KOG0305|consen 420 -----SMKLVAELLGHTSRVLYLALSPDGETIVTGAAD------ETLRFWNLFD 462 (484)
T ss_pred -----ccceeeeecCCcceeEEEEECCCCCEEEEeccc------CcEEeccccC
Confidence 466778899999 99999999999999999988 8999999865
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=193.10 Aligned_cols=245 Identities=14% Similarity=0.166 Sum_probs=191.4
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+|.+.|+.+.|+|+|..++++|.|..|.+|++....+. .-.+++|. +.|..+.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------------------------~~~lkgHs-gAVM~l~ 97 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------------------------FWVLKGHS-GAVMELH 97 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------------------------eeeecccc-ceeEeee
Confidence 3589999999999999999999999999999997622221 12255786 8999999
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCCcccccCCCCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSGF 297 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 297 (445)
|.+|++.|++++.|+ +|+.||.++|+... ...|..-|+.+.-+..|.. +.+++.|+++++||+++....+.......
T Consensus 98 ~~~d~s~i~S~gtDk-~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq 176 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDK-TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ 176 (338)
T ss_pred eccCCCEEEEecCCc-eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee
Confidence 999999999999995 99999999998865 4567778888885545655 45888899999999999888777777888
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
++++.|..++..+.++ +.+..+++|+.+ .......+.+|. .|+.+..+|+|.++.+-+.|
T Consensus 177 ltAv~f~d~s~qv~sg----gIdn~ikvWd~r----------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd----- 237 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISG----GIDNDIKVWDLR----------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD----- 237 (338)
T ss_pred EEEEEecccccceeec----cccCceeeeccc----------cCcceEEeecccCceeeEEeccCCCcccccccc-----
Confidence 9999999999998877 445566666543 445677889999 99999999999999999988
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCC----CCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPG----DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+++++||++.-..- ...+..+.+|. .....++|||++++. +.|..+-.+.+|+
T Consensus 238 -~tvrvwd~rp~~p~-~R~v~if~g~~hnfeknlL~cswsp~~~~i-----~ags~dr~vyvwd 294 (338)
T KOG0265|consen 238 -NTVRVWDVRPFAPS-QRCVKIFQGHIHNFEKNLLKCSWSPNGTKI-----TAGSADRFVYVWD 294 (338)
T ss_pred -ceEEEEEecccCCC-CceEEEeecchhhhhhhcceeeccCCCCcc-----ccccccceEEEee
Confidence 99999999843221 23344566543 345788999999873 3344444444443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=194.32 Aligned_cols=285 Identities=15% Similarity=0.223 Sum_probs=213.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccC---------------CCC-cceeEEecCCCCCeeEEEECcCCCcEEEE
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED---------------SEG-KDACILTSDSQRDVKVLEWRPNGGRSLSV 162 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~---------------~~~-~~~~~~~~~~~~~v~~l~~spd~~~l~~~ 162 (445)
..++++.+|||||.++|+|+.|..|+|.|++. ..+ ..++++ ..|.+.|+++.|+|....|+++
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEec
Confidence 34689999999999999999999999999861 011 122333 4699999999999997777777
Q ss_pred ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 163 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
+.|++|++||.......+.+. .++. ..+|.++.|+|.|.+|+.|... .++++||+
T Consensus 191 srD~tvKlFDfsK~saKrA~K----------------------~~qd--~~~vrsiSfHPsGefllvgTdH-p~~rlYdv 245 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFK----------------------VFQD--TEPVRSISFHPSGEFLLVGTDH-PTLRLYDV 245 (430)
T ss_pred cCCCeEEEEecccHHHHHHHH----------------------Hhhc--cceeeeEeecCCCceEEEecCC-CceeEEec
Confidence 789999999998332211111 1222 2589999999999999999877 59999999
Q ss_pred cCCCce----eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc-CC-CCCeeEEEECCCCCeEEEEEc
Q 013338 243 AQGLGT----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-ST-SGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 243 ~~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~-~~~v~~~~~sp~~~~l~~~~~ 315 (445)
++-++. +-..|.+.|+++.+++.|+..++++.||.|++||--++++.. +. .| ...|.+..|..+|++|+++
T Consensus 246 ~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-- 323 (430)
T KOG0640|consen 246 NTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-- 323 (430)
T ss_pred cceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec--
Confidence 988763 334578999999999999999999999999999998888843 32 34 4568999999999999976
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCCC------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
+.+..+.+|... ++..+.++.+.+ --+...|+....|++.-.+.. +.+.-||.++..
T Consensus 324 --G~DS~vkLWEi~----------t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas-----~slcsWdaRtad 386 (430)
T KOG0640|consen 324 --GKDSTVKLWEIS----------TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS-----NSLCSWDARTAD 386 (430)
T ss_pred --CCcceeeeeeec----------CCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc-----Cceeeccccchh
Confidence 445555665443 555566665542 245667888888888764432 789999999866
Q ss_pred eeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 390 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 390 ~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.... .-.+|++.+..+.-||.+.- +++ |..+-++.||--
T Consensus 387 r~~l----~slgHn~a~R~i~HSP~~p~----FmT-csdD~raRFWyr 425 (430)
T KOG0640|consen 387 RVAL----LSLGHNGAVRWIVHSPVEPA----FMT-CSDDFRARFWYR 425 (430)
T ss_pred hhhh----cccCCCCCceEEEeCCCCCc----eee-ecccceeeeeee
Confidence 5522 22389999999999998642 444 446777777643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=213.66 Aligned_cols=247 Identities=11% Similarity=0.146 Sum_probs=193.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
+.+..|-|.++++++|...|.+.+||+.. .....+. ..|.+.|++++.+||+..+++++.|.+|++|+.......
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS--~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-- 489 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLAS--ASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-- 489 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeeh--hhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc--
Confidence 44555666666666666666666666632 2222222 479999999999999999999999999999998722110
Q ss_pred cccccccccccccCCCCCc---eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCe
Q 013338 182 VRSGAASFLGALSRGPGTR---WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGL 257 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v 257 (445)
.+ ...+ ....++++- ...|.|+.+||||++|+++-.|+ +|+||-+++-+. ..+.+|.-+|
T Consensus 490 --~g-----------t~~k~lsl~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 490 --PG-----------TQKKVLSLKHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred --Cc-----------ccceeeeeccceEEec--cccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccce
Confidence 00 0000 011122332 36899999999999999999995 999999998766 5688999999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.|+..+||++.+++|+.|.+|++|-++=|.+ +.+.+|...|+++.|-|....++++ ++++.++.|+..
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~----gKD~kvKqWDg~------- 622 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTC----GKDGKVKQWDGE------- 622 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEe----cCcceEEeechh-------
Confidence 9999999999999999999999999999999 6788999999999999977777766 556777777653
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
....++.+.+|. .|++++.+|+|.+++++|.| .+|++|......
T Consensus 623 ---kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD------~sIRlwE~tde~ 667 (888)
T KOG0306|consen 623 ---KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD------KSIRLWERTDEI 667 (888)
T ss_pred ---hhhhheeeccchheeeeeEEcCCCCeEEeccCC------ceeEeeeccCcc
Confidence 667888999999 99999999999999999998 999999976533
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=205.59 Aligned_cols=275 Identities=13% Similarity=0.152 Sum_probs=207.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|||...+=......-.+.||+... ....+.+ ......|+++.|..||+.++++...|.|+|||..+.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~--~~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--- 100 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT--RSVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--- 100 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecch--hhhhhhH-HhhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence 4699999999664433333456788998643 2222323 346788999999999766655556699999996521
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCce-eeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGT-PIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v 257 (445)
..++.+.+|. .++..+.|+|++.. +++|++| +.+++||+.+...+ .+.+|+..|
T Consensus 101 ----------------------~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd-~v~k~~d~s~a~v~~~l~~htDYV 156 (487)
T KOG0310|consen 101 ----------------------VILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDD-KVVKYWDLSTAYVQAELSGHTDYV 156 (487)
T ss_pred ----------------------HHHHHHhhcc-CceeEEEecccCCeEEEecCCC-ceEEEEEcCCcEEEEEecCCccee
Confidence 1234467776 89999999996555 5555555 79999999988764 567899999
Q ss_pred eEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.+|+|- +..+++|+.||.|++||++.... .....|..+|.++.+-|.|..|+++++ ..+.+|++-.
T Consensus 157 R~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~-------- 226 (487)
T KOG0310|consen 157 RCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTT-------- 226 (487)
T ss_pred EeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecC--------
Confidence 99999996 55789999999999999998743 445589999999999999999998755 4456666532
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.++.+..+..|. .|+|+++..++..|++++-| +.+++||+.+-+.+. .+ ...++|.+++.|||
T Consensus 227 ----G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD------~~VKVfd~t~~Kvv~-----s~-~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 227 ----GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD------RHVKVFDTTNYKVVH-----SW-KYPGPVLSIAVSPD 290 (487)
T ss_pred ----CceehhhhhcccceEEEEEeecCCceEeecccc------cceEEEEccceEEEE-----ee-ecccceeeEEecCC
Confidence 233444555566 99999999999999999988 999999987655441 22 35678999999998
Q ss_pred CCCCCCCeEEEEecCeeeEee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~ 435 (445)
++ .+.+|.+||-+..-
T Consensus 291 d~-----t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 291 DQ-----TVVIGMSNGLVSIR 306 (487)
T ss_pred Cc-----eEEEecccceeeee
Confidence 76 58999999988753
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=203.27 Aligned_cols=264 Identities=12% Similarity=0.164 Sum_probs=206.8
Q ss_pred ccccccccccccccccCCCcCCcCc---------------------------CCeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 75 STLHGIISHSIKPLLHPDHVHLLPE---------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~~~~~---------------------------~~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.++..|..|+....+.+++..+..+ .+|..+.||||.++|++++.+..+.+||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 4566777777666666555544432 1588999999999999999999999999
Q ss_pred ccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEee
Q 013338 128 YEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL 207 (445)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (445)
+++ |........++...+.+++|.|||.++++++.|+++..||++... ....
T Consensus 298 v~t--gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--------------------------~~~W 349 (519)
T KOG0293|consen 298 VDT--GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--------------------------LGNW 349 (519)
T ss_pred CCc--chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--------------------------hhcc
Confidence 964 666666655677899999999999999999999999999998211 1112
Q ss_pred cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 208 ~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
++.....|.+++.++||+++++...|. .|++|+..+.....+...+..|+++..|.+++++++.-.+..+++||++..+
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 232335799999999999999999994 9999999887776677778899999999999999999999999999999766
Q ss_pred c-ccccCCCCC--eeEEEECCCC-CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 288 S-EPWSSTSGF--VTGATWDPEG-RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 288 ~-~~~~~~~~~--v~~~~~sp~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
. .++.+|... +-.-+|--.. .+++ +++.|..+++|+.. .++.+..+.||. .|++++|+|..
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fia-SGSED~kvyIWhr~-------------sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIA-SGSEDSKVYIWHRI-------------SGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEE-ecCCCceEEEEEcc-------------CCceeEeecCCcceeeEEecCCCC
Confidence 5 566666543 4444666544 5555 55666666666643 678899999999 89999999976
Q ss_pred -CEEEEEEcCCCcccceEEEEEEccC
Q 013338 363 -ERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 363 -~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.++|+++.| |+|+||-...
T Consensus 495 p~m~ASasDD------gtIRIWg~~~ 514 (519)
T KOG0293|consen 495 PEMFASASDD------GTIRIWGPSD 514 (519)
T ss_pred HHHhhccCCC------CeEEEecCCc
Confidence 567777666 9999998763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=187.62 Aligned_cols=258 Identities=18% Similarity=0.251 Sum_probs=200.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC--cEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~--~l~~~~~dg~i~vw~~~~~ 176 (445)
..+++++|. +|.++|+|+.|.+|+|||+.. ......+. .|.+.|+++.|.+.-. +|++++.||.|.+|+..
T Consensus 43 ~~sitavAV--s~~~~aSGssDetI~IYDm~k--~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-- 115 (362)
T KOG0294|consen 43 AGSITALAV--SGPYVASGSSDETIHIYDMRK--RKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-- 115 (362)
T ss_pred ccceeEEEe--cceeEeccCCCCcEEEEeccc--hhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcC--
Confidence 456888887 589999999999999999953 44444453 5999999999998754 89999999999999988
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
.|.+++.+++|. +.|+.++.+|.+++.++.+.| +.+++|++-.|+..........
T Consensus 116 -----------------------~W~~~~slK~H~-~~Vt~lsiHPS~KLALsVg~D-~~lr~WNLV~Gr~a~v~~L~~~ 170 (362)
T KOG0294|consen 116 -----------------------SWELLKSLKAHK-GQVTDLSIHPSGKLALSVGGD-QVLRTWNLVRGRVAFVLNLKNK 170 (362)
T ss_pred -----------------------CeEEeeeecccc-cccceeEecCCCceEEEEcCC-ceeeeehhhcCccceeeccCCc
Confidence 899999999997 679999999999999999999 6999999999988766666666
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
...+.|+|.|.+++.+..+ .|-+|.+.+............+.++.|-. +..+++|.++ ..+.+++..
T Consensus 171 at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~----~~i~~~D~d------- 237 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDN----EWISLKDTD------- 237 (362)
T ss_pred ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCC----ceEEEeccC-------
Confidence 6679999999999888865 58899998877644444446677787764 4566666443 556666543
Q ss_pred cCccccccccccCCC-ccceEEe--CCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~--sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
+..+...+.+|. .|-++.+ .|++.+|+++|+| |.|+|||++........++..+.. +..++|+..
T Consensus 238 ---s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD------G~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 238 ---SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD------GFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ---CCccceeeecchhheeeeEEEecCCceEEEEeccC------ceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 355677788898 8888883 5788999999998 999999998764333334444332 445555554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=210.21 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=198.7
Q ss_pred EecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 139 LTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 139 ~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
...+|...|+++.|.| .+..|++++.|+.|+||++-.. ..+++++.+|. .+|..
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------~~~lrtf~gH~-k~Vrd 263 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------RRCLRTFKGHR-KPVRD 263 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------------------------cceehhhhcch-hhhhh
Confidence 3468999999999999 6556677778999999999732 24788899997 89999
Q ss_pred EEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCc-ccccCCC
Q 013338 218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS 295 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~ 295 (445)
++|+++|..+++++.| +.+++||+++|++...+.....++++.|+|++ +.+++|+.|+.|+.||+++++. +.+..|-
T Consensus 264 ~~~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL 342 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL 342 (503)
T ss_pred hhccccCCeeeeeecc-eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh
Confidence 9999999999999999 69999999999998888888899999999998 7889999999999999999998 5677888
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCC
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
+.|..+.|-++|+.++++.+. ..+++|+... ...++.+..+. ...++..+|++++++.-+.|
T Consensus 343 g~i~~i~F~~~g~rFissSDd----ks~riWe~~~----------~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d-- 406 (503)
T KOG0282|consen 343 GAILDITFVDEGRRFISSSDD----KSVRIWENRI----------PVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD-- 406 (503)
T ss_pred hheeeeEEccCCceEeeeccC----ccEEEEEcCC----------CccchhhcchhhccCcceecCCCCCeehhhccC--
Confidence 999999999999999977442 3455554321 11122222222 67889999999999998888
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCC--CCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPG--DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.|.+|.+... ......+.+.||. +.-..+.|||||++ |.-|-++|++.+|+.-
T Consensus 407 ----N~i~ifs~~~~--~r~nkkK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 407 ----NYIAIFSTVPP--FRLNKKKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWK 462 (503)
T ss_pred ----ceEEEEecccc--cccCHhhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeech
Confidence 89999996532 2233344567774 44567899999986 8889999999999853
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-27 Score=189.11 Aligned_cols=240 Identities=17% Similarity=0.256 Sum_probs=188.6
Q ss_pred cCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~ 176 (445)
...+..++|+++. ..+++++.||+++|||...+.+ . ....++|...|.++.|++..+ .+++++-|++|++|+...+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-P-i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-P-IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-c-hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 3468899999964 6777899999999999754333 2 333468999999999998644 4566677999999998833
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccC-CCceeeecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ-GLGTPIRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~-~~~~~~~~~~ 254 (445)
. -+.++.+|. ..|...+|+| ..+++++++.| |.+++||++. |+...+..|.
T Consensus 138 ~-------------------------Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd-~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 138 N-------------------------SVQTFNGHN-SCIYQAAFSPHIPNLFASASGD-GTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred c-------------------------ceEeecCCc-cEEEEEecCCCCCCeEEEccCC-ceEEEEEecCCCceeEEEecc
Confidence 2 345578886 8999999999 67889999999 7999999985 4556677888
Q ss_pred CCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.++.|+. +.+.|++|+.|+.|+.||++.-+. ..+.+|.-.|+.++|||...-++++++- +...++|+...
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY---DmT~riw~~~~- 266 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY---DMTVRIWDPER- 266 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc---cceEEeccccc-
Confidence 8999999997 466788999999999999998765 4567899999999999988766655544 45566665321
Q ss_pred ccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEc
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
....++++..|. -+..+.||+ ++.++|+++-| ..++||+.
T Consensus 267 --------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD------e~l~Vw~p 308 (311)
T KOG0277|consen 267 --------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD------ELLYVWNP 308 (311)
T ss_pred --------chhhhhhhhccceEEeccccccccCceeeecccc------cceeeecc
Confidence 334566777888 799999998 56788988777 89999984
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=211.56 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=224.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+++++|.+...+++|+ .+.++||+.+ +.++++++.. +-+.+..|-|.+++++.+...|.+.+||+....
T Consensus 374 ~dVRsl~vS~d~~~~~Sga-~~SikiWn~~--t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-- 445 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGA-GESIKIWNRD--TLKCIRTITC---GYILASKFVPGDRYIVLGTKNGELQVFDLASAS-- 445 (888)
T ss_pred hheeEEEeecCceeeeecC-CCcEEEEEcc--CcceeEEecc---ccEEEEEecCCCceEEEeccCCceEEEEeehhh--
Confidence 4799999999998888764 6779999985 4777777753 378899999998888888888999999998332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-----CCc-------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-----GLG------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-----~~~------- 247 (445)
++.+++.|. +.+++++.+||++.++++|.|+ +|++||..- +..
T Consensus 446 -----------------------l~Eti~AHd-gaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 446 -----------------------LVETIRAHD-GAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred -----------------------hhhhhhccc-cceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeec
Confidence 344566675 8999999999999999999995 999999752 211
Q ss_pred -eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 248 -TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 248 -~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.........|.|+++||||++|+++--|.+|+||-+++.+. ..+.+|.-+|.|+..|||++.++++ +.+..+.+
T Consensus 501 ~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTg----SADKnVKi 576 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTG----SADKNVKI 576 (888)
T ss_pred cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEec----cCCCceEE
Confidence 12334467899999999999999999999999999999887 6788999999999999999999987 34567777
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
|... -+.+-+.+-+|. .|.++.|-|....+++++.| +.|+-||-..- ..++.+.+|..
T Consensus 577 WGLd----------FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD------~kvKqWDg~kF-----e~iq~L~~H~~ 635 (888)
T KOG0306|consen 577 WGLD----------FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD------GKVKQWDGEKF-----EEIQKLDGHHS 635 (888)
T ss_pred eccc----------cchhhhhhhcccCceeEEEEcccceeEEEecCc------ceEEeechhhh-----hhheeeccchh
Confidence 7653 456778888998 99999999999999999998 99999998853 34568999999
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.|++++.+|+|.| +..+..+-.|..|.
T Consensus 636 ev~cLav~~~G~~-----vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 636 EVWCLAVSPNGSF-----VVSSSHDKSIRLWE 662 (888)
T ss_pred eeeeeEEcCCCCe-----EEeccCCceeEeee
Confidence 9999999999987 33333455565554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-27 Score=188.88 Aligned_cols=256 Identities=16% Similarity=0.168 Sum_probs=198.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
...|+|++.+-+.+.+++|+.|.+++|||++ +|+.+.... ...+|..+.|+++|..++++..+ +.|.++|+
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~--tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVE--TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcC--CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence 3469999999999999999999999999995 587776664 67889999999998777776653 67889998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~ 251 (445)
+.......-. .+...+..+. ..++.+-|.|-++.|++|..+ |.|.+||++++... ...
T Consensus 128 ~~~~~~~~s~------------------ep~~kI~t~~-skit~a~Wg~l~~~ii~Ghe~-G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 128 RDDSSDIDSE------------------EPYLKIPTPD-SKITSALWGPLGETIIAGHED-GSISIYDARTGKELVDSDE 187 (327)
T ss_pred cCChhhhccc------------------CceEEecCCc-cceeeeeecccCCEEEEecCC-CcEEEEEcccCceeeechh
Confidence 8332111100 1223344443 789999999999999999999 89999999998653 235
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC-
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP- 330 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~- 330 (445)
.|...|++++++||..++++++.|.+-++||.++-++.+......++++.+++|...+++.++..+.. .+..-..+.
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~--dVTTT~~r~G 265 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAM--DVTTTSTRAG 265 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceee--eeeeeccccc
Confidence 67889999999999999999999999999999998887666677899999999999998887654432 222222211
Q ss_pred CccccccCc-cccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 331 SLDAHLLPV-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 331 ~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+...+.. -.+++..+++|- +|++++|+|+|+..++|++| |.|++...+
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED------G~VR~h~Fd 317 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED------GYVRLHHFD 317 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC------ceEEEEEec
Confidence 122222211 345678889999 99999999999999999888 899987665
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=208.27 Aligned_cols=286 Identities=16% Similarity=0.243 Sum_probs=222.0
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
+...+..+-+.|+. ...||.| ....|.+|+... +....... -+...|+++.|+++|.+|+++..+|.|.|||...
T Consensus 174 l~dDfY~nlldWss-~n~laVa-lg~~vylW~~~s--~~v~~l~~-~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 174 LQDDFYLNLLDWSS-ANVLAVA-LGQSVYLWSASS--GSVTELCS-FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred ccccHhhhHhhccc-CCeEEEE-ecceEEEEecCC--CceEEeEe-cCCCceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 33445567789994 4556655 455799999753 44333332 2378999999999999999999999999999984
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRG 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~ 253 (445)
... ...+.+++...|.+++|+ +..+.+|+.+ |.|..+|++..+.. .+..|
T Consensus 249 ~k~-------------------------~~~~~~~h~~rvg~laW~--~~~lssGsr~-~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 249 QKK-------------------------TRTLRGSHASRVGSLAWN--SSVLSSGSRD-GKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred ccc-------------------------cccccCCcCceeEEEecc--CceEEEecCC-CcEEEEEEecchhhhhhhhcc
Confidence 333 333555335899999998 5678888888 79999999976542 36678
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
...|..++|++|+++||+|+.|+.+.|||...... ..+..|.+.|..++|+|-..-|++.+ +...++.|++|+..
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~--- 376 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTN--- 376 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcC---
Confidence 99999999999999999999999999999966555 67789999999999999766555332 33678999999864
Q ss_pred cccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 333 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
.+..+..+....-|.++.|++..+-|+++...++ +.|.||+..+.+. +..+.+|...|..+++|
T Consensus 377 -------~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~----n~i~lw~~ps~~~-----~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 377 -------TGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE----NQITLWKYPSMKL-----VAELLGHTSRVLYLALS 440 (484)
T ss_pred -------CCcEecccccCCceeeEEEcCCCCEEEEecCCCC----CcEEEEeccccce-----eeeecCCcceeEEEEEC
Confidence 4455555555557999999999987777643322 7899999987444 45788999999999999
Q ss_pred ecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|||.+ +++|-.|..+.||.++-
T Consensus 441 Pdg~~-----i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 441 PDGET-----IVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCE-----EEEecccCcEEeccccC
Confidence 99875 77888899999998764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=187.07 Aligned_cols=228 Identities=18% Similarity=0.317 Sum_probs=186.8
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|...|.+++|+.+|.+|+.++.|+++.+|++...... .-...++|+ +.|..++|
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-----------------------~~~~~~gh~-~svdql~w 72 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-----------------------KELVYRGHT-DSVDQLCW 72 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-----------------------hhhcccCCC-cchhhhee
Confidence 578899999999999999999999999999999833111 112256775 78999999
Q ss_pred CC-CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCee
Q 013338 221 GP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT 299 (445)
Q Consensus 221 sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 299 (445)
+| +..++++++.|+ +|++||.+.+++.......+.=..+.|+|+|.++++++.|..|.+.|.++.+..........++
T Consensus 73 ~~~~~d~~atas~dk-~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 73 DPKHPDLFATASGDK-TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred CCCCCcceEEecCCc-eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence 88 567889999995 9999999999998777776666679999999999999999999999999988766666667788
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
.++|+.++.+++.. .+-+.+.++..- ..+++..++.|. ...++.|+|+|+++|+|+.| .
T Consensus 152 e~~w~~~nd~Fflt-~GlG~v~ILsyp-------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD------A 211 (313)
T KOG1407|consen 152 EISWNNSNDLFFLT-NGLGCVEILSYP-------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD------A 211 (313)
T ss_pred eeeecCCCCEEEEe-cCCceEEEEecc-------------ccccccccccCCcceEEEEECCCCceEeecccc------c
Confidence 99999777766644 333444444432 667888999999 89999999999999999998 8
Q ss_pred EEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC
Q 013338 379 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~ 418 (445)
.+-+||++. +.+.+.+.-+.-+|..+.||.||+|.
T Consensus 212 lvSLWD~~E-----LiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 212 LVSLWDVDE-----LICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred eeeccChhH-----hhhheeeccccCceEEEEeccCccee
Confidence 999999985 44456677788999999999999973
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=186.44 Aligned_cols=273 Identities=11% Similarity=0.104 Sum_probs=200.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.++.|+|.+..|+.++.||.+++|+++. ......+ .|..++.+++|.++ ..+++++.||.|+.+|+.+....
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~--~~l~~~~--~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPA--NSLKLKF--KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccc--hhhhhhe--ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce
Confidence 4699999999999999999999999999964 2322333 48999999999997 89999999999999999844322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
.+..| ..++.|+.+++....+++|++| ++|++||.+.....-.......|.+
T Consensus 89 --------------------------~igth-~~~i~ci~~~~~~~~vIsgsWD-~~ik~wD~R~~~~~~~~d~~kkVy~ 140 (323)
T KOG1036|consen 89 --------------------------QIGTH-DEGIRCIEYSYEVGCVISGSWD-KTIKFWDPRNKVVVGTFDQGKKVYC 140 (323)
T ss_pred --------------------------eeccC-CCceEEEEeeccCCeEEEcccC-ccEEEEeccccccccccccCceEEE
Confidence 13344 4899999999988899999999 5999999997544444445568888
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+.. .|+.|++|+.|..|.+||+++.... .-...+-.++++++-|++.-.+++ ..++.+.+......-....
T Consensus 141 ~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s----SieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 141 MDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS----SIEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred Eec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE----eecceEEEEccCCchHHhh
Confidence 876 5789999999999999999987652 233556678999999977766644 2233333322111100000
Q ss_pred cCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 337 LPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
.....++-+...... +|++++|+|-.+.||||+.| |.|.+||+.+.+.+ +.+......|.+++|+
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD------G~V~~Wd~~~rKrl-----~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD------GIVNIWDLFNRKRL-----KQLAKYETSISSLSFS 283 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCC------ceEEEccCcchhhh-----hhccCCCCceEEEEec
Confidence 001122222222211 79999999999999999888 99999999987655 3455556779999999
Q ss_pred ecCCCCCCCeEEEEe
Q 013338 413 FHDKFKQGPLLSVCW 427 (445)
Q Consensus 413 pdg~~~~~~~l~~~~ 427 (445)
.||. +||++.
T Consensus 284 ~dG~-----~LAia~ 293 (323)
T KOG1036|consen 284 MDGS-----LLAIAS 293 (323)
T ss_pred cCCC-----eEEEEe
Confidence 9976 478775
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=196.82 Aligned_cols=240 Identities=15% Similarity=0.175 Sum_probs=202.5
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
...+|.+.|.++++.|-+..+++++.|++++|||+.+ + .+.-++.+|. ..|..+
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat---------g----------------~LkltltGhi-~~vr~v 199 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT---------G----------------QLKLTLTGHI-ETVRGV 199 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc---------C----------------eEEEeecchh-heeeee
Confidence 3468999999999999877788888899999999993 2 3556678886 899999
Q ss_pred EECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCC
Q 013338 219 SWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSG 296 (445)
Q Consensus 219 ~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~ 296 (445)
++|+-..++++++.| +.|+.||+...+.++ ..+|-..|.+++.+|.-..|++|+.|.+++|||+++... ..+.+|..
T Consensus 200 avS~rHpYlFs~ged-k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~ 278 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGED-KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN 278 (460)
T ss_pred eecccCceEEEecCC-CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence 999999999999999 699999999887754 667889999999999999999999999999999999776 67889999
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcc
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDI 375 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~ 375 (445)
+|.++.+.|....++++ ..+..+++|+.. .++...++..|. .+.+++.+|....+|+++.|
T Consensus 279 ~V~~V~~~~~dpqvit~----S~D~tvrlWDl~----------agkt~~tlt~hkksvral~lhP~e~~fASas~d---- 340 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITG----SHDSTVRLWDLR----------AGKTMITLTHHKKSVRALCLHPKENLFASASPD---- 340 (460)
T ss_pred cceeEEeecCCCceEEe----cCCceEEEeeec----------cCceeEeeecccceeeEEecCCchhhhhccCCc----
Confidence 99999999988888866 334556666543 566677788888 89999999999999999876
Q ss_pred cceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 376 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.|+-|++..|..+ +.+.+|..-|+.++...||- +..|-++|.+.+|+-
T Consensus 341 ---nik~w~~p~g~f~-----~nlsgh~~iintl~~nsD~v------~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 341 ---NIKQWKLPEGEFL-----QNLSGHNAIINTLSVNSDGV------LVSGGDNGSIMFWDW 388 (460)
T ss_pred ---cceeccCCccchh-----hccccccceeeeeeeccCce------EEEcCCceEEEEEec
Confidence 5999999987665 45788999999999887764 556678888888764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=190.28 Aligned_cols=241 Identities=13% Similarity=0.197 Sum_probs=199.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++..++.+..+.|+++.|-+.+|||.- +|..+..+ .|...|.+++|+.|..+|++++.+..++|||++....+
T Consensus 60 gavw~~~l~~na~~aasaaadftakvw~a~--tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 60 GAVWSATLNKNATRAASAAADFTAKVWDAV--TGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred cceeeeecCchhhhhhhhcccchhhhhhhh--hhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 348888999999999999999999999974 57666665 48888999999999999999999999999999854433
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
. ..+.+|. +.|..+-|....+.|+++.+| ++|++||.+++...........|++
T Consensus 136 p------------------------~E~~ght-g~Ir~v~wc~eD~~iLSSadd-~tVRLWD~rTgt~v~sL~~~s~VtS 189 (334)
T KOG0278|consen 136 P------------------------KEISGHT-GGIRTVLWCHEDKCILSSADD-KTVRLWDHRTGTEVQSLEFNSPVTS 189 (334)
T ss_pred c------------------------hhhcCCC-CcceeEEEeccCceEEeeccC-CceEEEEeccCcEEEEEecCCCCcc
Confidence 2 2356675 899999999888899998888 6999999999999888888999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
+.++++|++|.++. .+.|.+||..+....+-......|.+.+++|+...++ ++..+...+.+++.
T Consensus 190 lEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV-aGged~~~~kfDy~------------- 254 (334)
T KOG0278|consen 190 LEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV-AGGEDFKVYKFDYN------------- 254 (334)
T ss_pred eeeccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCceEE-ecCcceEEEEEecc-------------
Confidence 99999999776654 6789999999988766666677899999999986555 55566666666654
Q ss_pred cccccccc-cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 340 DLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 340 ~~~~~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+++.+..+ ++|. +|.++.|+|||...|+||+| |+|+||.+..++..
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED------GTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED------GTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCC------ceEEEEEecCCCch
Confidence 55555554 7777 99999999999999999998 99999998866544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=202.71 Aligned_cols=283 Identities=16% Similarity=0.220 Sum_probs=218.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+.-|.++..|...+++.+|+ .|-|+|||+.....+....... ....-|+++...|||+.|+++|.-.++.|||+...
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 44578888999999998875 6779999997543332222111 24567899999999999999999999999999844
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~ 255 (445)
...... .+... .-...+++.+||.+..+++..| |.|.|||+.+... ..+.+|..
T Consensus 498 Tprika-----------------------eltss-apaCyALa~spDakvcFsccsd-GnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 498 TPRIKA-----------------------ELTSS-APACYALAISPDAKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred Ccchhh-----------------------hcCCc-chhhhhhhcCCccceeeeeccC-CcEEEEEcccceeeecccCCCC
Confidence 322111 11111 1456788999999999999999 8999999998866 45778899
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.|+.+++||..|.+|+.|++|+.||++++...........|.++..+|++.+++++..+ +.+.++..
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMen-s~vevlh~---------- 621 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMEN-SNVEVLHT---------- 621 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeeccc-CcEEEEec----------
Confidence 9999999999999999999999999999998775555677889999999999999998654 33444443
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
+......+..|. -|.++.|.+.|+++++.+.| +.+..|...-|..+ +.......|.++.+|.|
T Consensus 622 ----skp~kyqlhlheScVLSlKFa~cGkwfvStGkD------nlLnawrtPyGasi------FqskE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 622 ----SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASI------FQSKESSSVLSCDISFD 685 (705)
T ss_pred ----CCccceeecccccEEEEEEecccCceeeecCch------hhhhhccCccccce------eeccccCcceeeeeccC
Confidence 233333444565 79999999999999999888 89999999877655 22235678999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.+| +..|..+-+..+|.+.|
T Consensus 686 dky-----IVTGSGdkkATVYeV~Y 705 (705)
T KOG0639|consen 686 DKY-----IVTGSGDKKATVYEVIY 705 (705)
T ss_pred ceE-----EEecCCCcceEEEEEeC
Confidence 886 55555555788888765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=215.36 Aligned_cols=272 Identities=17% Similarity=0.282 Sum_probs=193.0
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc------------------------ccccccCCC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS------------------------FLGALSRGP 197 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~ 197 (445)
.|.+.|+++.||+||++|+++|.|+.|+||.+..... ..+..+... .........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 6999999999999999999999999999999874111 000000000 000000000
Q ss_pred ---C---------CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcC-
Q 013338 198 ---G---------TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP- 264 (445)
Q Consensus 198 ---~---------~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp- 264 (445)
. -.-..++.+.+|. +.|..+.||.+ ++|++++.|+ +|++|++....+...+.|...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSKn-~fLLSSSMDK-TVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSKN-NFLLSSSMDK-TVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred CCccccCCCccccccccchhhhhccc-hhheecccccC-CeeEeccccc-cEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0 0012456788997 89999999976 5899999995 99999999999999999999999999999
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 265 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 265 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
|.++|++|+-|+.|+||++...+...+.....-|++++|.|||++.++|+ ..+..++++.........+.+....-
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt----~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT----FNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE----eccEEEEEEccCCeEEEeeeEeeccC
Confidence 68999999999999999999988877777778999999999999999883 34555554432111111111111111
Q ss_pred ccccCCCccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC--CCCceeEeecCCCCCCC
Q 013338 345 VSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 345 ~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~v~~v~~spdg~~~~~~ 421 (445)
+...++ .|+++.|.|... .+++.+.| ..|+|||.+...++ ..++|+.. .-..-.|+.||++
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnD------SrIRI~d~~~~~lv-----~KfKG~~n~~SQ~~Asfs~Dgk~---- 560 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVTSND------SRIRIYDGRDKDLV-----HKFKGFRNTSSQISASFSSDGKH---- 560 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEecCC------CceEEEeccchhhh-----hhhcccccCCcceeeeEccCCCE----
Confidence 122222 799999987543 35555667 89999999865554 35665332 2346689999987
Q ss_pred eEEEEecCeeeEeeeee
Q 013338 422 LLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 422 ~l~~~~~~G~v~~~~~~ 438 (445)
+.++.++-.|++|.+.
T Consensus 561 -IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 561 -IVSASEDSWVYIWKND 576 (712)
T ss_pred -EEEeecCceEEEEeCC
Confidence 5566699999999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=192.27 Aligned_cols=264 Identities=17% Similarity=0.203 Sum_probs=206.2
Q ss_pred cccccccccccccccccccCCCcCCcCc------------------------CCeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.-...+..|...++....+|+..-...+ ..|.++.||.||.+||+|..+|.|+||.
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 3456688899998888888843322222 1499999999999999999999999999
Q ss_pred ccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEee
Q 013338 128 YEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL 207 (445)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (445)
.. ++.....+. ..-..+.=+.|+|.+..|++++.||.+.+|.+..+ ...+.+
T Consensus 135 ~s--tg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-------------------------~~~kv~ 186 (399)
T KOG0296|consen 135 VS--TGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-------------------------ALCKVM 186 (399)
T ss_pred cc--cCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-------------------------ceeeEe
Confidence 85 455555553 24455667899999888888888999999999833 145567
Q ss_pred cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-----------------------------------
Q 013338 208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----------------------------------- 252 (445)
Q Consensus 208 ~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----------------------------------- 252 (445)
.+|. .++++=.|.|+|+.++++..| |+|++|++.+++......
T Consensus 187 ~Gh~-~~ct~G~f~pdGKr~~tgy~d-gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 187 SGHN-SPCTCGEFIPDGKRILTGYDD-GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred cCCC-CCcccccccCCCceEEEEecC-ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 7885 899999999999999999988 799999998874321111
Q ss_pred -----------------CCCCeeEEEE---cCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEE
Q 013338 253 -----------------GFGGLSILKW---SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 253 -----------------~~~~v~~~~~---sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 312 (445)
+...+.++.+ +..=.+.|+|+.||+|.|||+...+.+....|...|..+.|-+ ..+|++
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t 343 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT 343 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchhee
Confidence 0111222333 2233467889999999999999999998889999999999998 677777
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
++. .+.++.|+.+ ++..+.++.+|. .|.+++++|++++++++|.| ++.+||++.
T Consensus 344 ~c~----~g~v~~wDaR----------tG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D------~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACA----NGKVRQWDAR----------TGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD------NTALVFEVP 398 (399)
T ss_pred ecc----CceEEeeecc----------ccceEEEEecCchheeEEEEcCCCcEEEEecCC------CeEEEEecC
Confidence 744 4566666654 778889999999 99999999999999999988 899999874
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=192.60 Aligned_cols=265 Identities=15% Similarity=0.275 Sum_probs=201.8
Q ss_pred cCCeeEEEEccCC---CEEEEEECCCeEEEEEccCCCCcceeE-EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 99 EVDLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 99 ~~~v~~~~~sp~g---~~la~~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+.+|.+++|.-.. ..+++++.|.++++|.++......... ...+|...|-+++..++|.++++++.|..++||+..
T Consensus 144 t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 144 TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE 223 (423)
T ss_pred CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccC
Confidence 4578878775433 469999999999999997644332221 113899999999999999999999999999999933
Q ss_pred CCCCccccccccccc-cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 175 YPGNAASVRSGAASF-LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
.. ....+....... ...-.......-..+-.+.+|. .+|.++.|++ ...+++++.|. +|+.||+.++........
T Consensus 224 ~~-~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 224 TD-EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTT 299 (423)
T ss_pred CC-ccccccccchhhhhhhhhhhcccccCceEEecccc-cceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeec
Confidence 11 111110000000 0000001111223566788997 8999999988 67899999996 999999999998887778
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
...++++..+|..++|++|+.|..+++||.+++.- ..+.+|.+.|.++.|+|...+++++++.|+....|++..
T Consensus 300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS-- 377 (423)
T KOG0313|consen 300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS-- 377 (423)
T ss_pred CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc--
Confidence 89999999999999999999999999999998754 567899999999999999999988877766666665543
Q ss_pred CCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
...++..+.+|. .|.++.|+ ++.++++|+.| ++|+++...
T Consensus 378 ----------~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD------~~l~i~~~~ 418 (423)
T KOG0313|consen 378 ----------TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD------NKLRIFKGS 418 (423)
T ss_pred ----------CCCcceeeccCCceEEEEecc-CCceEEeccCc------ceEEEeccc
Confidence 334677788888 89999997 46789999988 899998754
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=204.02 Aligned_cols=297 Identities=18% Similarity=0.259 Sum_probs=223.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec----CCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS----DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+..|+++.|+|.+..|++++.|.++.||..+..+|-....... +.....++..|+|++..+++-+..|..++|...
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 4679999999999999999999999999988766766655433 234468899999998888888889999999832
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-----------
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA----------- 243 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~----------- 243 (445)
. ...|.....+.+|. +.|+.++|+|.|.+|++++.| .+-++|-.-
T Consensus 347 --d--------------------~~~w~~~~~iSGH~-~~V~dv~W~psGeflLsvs~D-QTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 347 --D--------------------KTFWTQEPVISGHV-DGVKDVDWDPSGEFLLSVSLD-QTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred --C--------------------ccceeecccccccc-ccceeeeecCCCCEEEEeccc-cceeeecccccccceeeecc
Confidence 1 11344444455664 667777777777776666666 355554221
Q ss_pred -----------------------------------CC-------------------------------------------
Q 013338 244 -----------------------------------QG------------------------------------------- 245 (445)
Q Consensus 244 -----------------------------------~~------------------------------------------- 245 (445)
..
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 00
Q ss_pred ----------------------------------CceeeecCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCC
Q 013338 246 ----------------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW 286 (445)
Q Consensus 246 ----------------------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~ 286 (445)
+..++.+|...|++++.+|+|+++|+++... .|++|+..+.
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch
Confidence 1223445667899999999999999988653 6999999998
Q ss_pred Cc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 287 TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 287 ~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
.. ..+..|.-.|+.++|||||++|++. ++++.+.+|....... ........+.|. -|.++.|+|++.+
T Consensus 563 ~~~~~L~~HsLTVT~l~FSpdg~~LLsv----sRDRt~sl~~~~~~~~------~e~~fa~~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 563 LQVQELEGHSLTVTRLAFSPDGRYLLSV----SRDRTVSLYEVQEDIK------DEFRFACLKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred hhhheecccceEEEEEEECCCCcEEEEe----ecCceEEeeeeecccc------hhhhhccccccceEEEEcccCcccce
Confidence 77 4588999999999999999999987 5577788776532211 111133467788 7999999999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCC--CeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+||+|.| .+|++|..... +.+.. . ....++..|+.++|.|--....+.++++|.++|.|.+|...
T Consensus 633 FaTaSRD------K~VkVW~~~~~~d~~i~~--~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 633 FATASRD------KKVKVWEEPDLRDKYISR--F-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEecCC------ceEEEEeccCchhhhhhh--h-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9999999 99999999876 22211 0 23357889999999987666777899999999999998854
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=178.38 Aligned_cols=240 Identities=15% Similarity=0.243 Sum_probs=190.9
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..+.++|..+.|+-||++.+++|.|.+|++|+.. .+ .+++++.+|. ..|..++.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------rg----------------~liktYsghG-~EVlD~~~ 67 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------RG----------------ALIKTYSGHG-HEVLDAAL 67 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeeccc---------cc----------------ceeeeecCCC-ceeeeccc
Confidence 5689999999999999999999999999999987 22 4788899985 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc---cCCCC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---SSTSG 296 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~ 296 (445)
+.|+..+++++.|+ .+.+||+++|+.. ++.+|.+.|+.++|+.+...+++|+.|.++++||.++....++ .....
T Consensus 68 s~Dnskf~s~GgDk-~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 68 SSDNSKFASCGGDK-AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred cccccccccCCCCc-eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999999995 9999999999885 4667899999999999999999999999999999998776443 35667
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCccc
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.|.++..+. ..|+ +++.++..+.+++.. +.....+-+| +|+++.|++|++.++.++.|
T Consensus 147 ~V~Si~v~~--heIv-aGS~DGtvRtydiR~-------------G~l~sDy~g~-pit~vs~s~d~nc~La~~l~----- 204 (307)
T KOG0316|consen 147 GVSSIDVAE--HEIV-AGSVDGTVRTYDIRK-------------GTLSSDYFGH-PITSVSFSKDGNCSLASSLD----- 204 (307)
T ss_pred ceeEEEecc--cEEE-eeccCCcEEEEEeec-------------ceeehhhcCC-cceeEEecCCCCEEEEeecc-----
Confidence 788888863 3344 445556666666542 2222222222 79999999999999999998
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC-CCCeEEEEecCeeeEeeeeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~-~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+++++.|-.+|+++ +.++||...-..+ |.++. ....+.-|.++|+|.+|++.-
T Consensus 205 -stlrLlDk~tGklL-----~sYkGhkn~eykl----dc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 205 -STLRLLDKETGKLL-----KSYKGHKNMEYKL----DCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred -ceeeecccchhHHH-----HHhcccccceeee----eeeecccceeEEeccCCceEEEEEecc
Confidence 99999999998876 4788886543333 33332 234566778999999999864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=196.88 Aligned_cols=273 Identities=12% Similarity=0.164 Sum_probs=208.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+|+.+ |...+++|..|++|+|||.+. -.+...+ .+|.+.|.|+.|.. +.++++++|.+|+|||++++.
T Consensus 198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~--~~c~~~L-~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge-- 268 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNS--LECLKIL-TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGE-- 268 (499)
T ss_pred CceEEEEe--cchhhhcccccCceEEecccc--HHHHHhh-hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCc--
Confidence 36888888 556789999999999999853 4444444 58999999999865 477888889999999999443
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFG 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~ 255 (445)
+++++-.|. ..|..+.|+. .++++++.|. ++.+||+.....+ .+.+|..
T Consensus 269 -----------------------~l~tlihHc-eaVLhlrf~n--g~mvtcSkDr-siaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 269 -----------------------PLNTLIHHC-EAVLHLRFSN--GYMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred -----------------------hhhHHhhhc-ceeEEEEEeC--CEEEEecCCc-eeEEEeccCchHHHHHHHHhhhhh
Confidence 334455565 7899999964 5899999995 9999999876543 3457889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.|+.+.| +.+++++++.|.+|++|++.+.+. ..+.+|...|.|+.+ .++++++| +.+ ..+++|+..
T Consensus 322 aVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG-SSD---ntIRlwdi~----- 388 (499)
T KOG0281|consen 322 AVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSD---NTIRLWDIE----- 388 (499)
T ss_pred heeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEec-CCC---ceEEEEecc-----
Confidence 9999999 467999999999999999999988 667799988988877 46777765 333 445555433
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee----eeeeeeeeeCCCCCCCce
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI----SLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~v~~v 409 (445)
.+.+++.+.+|. -|.++.| |.+.+++|+.| |+|+|||+..+... ..-++..+..|++.|..+
T Consensus 389 -----~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD------GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 389 -----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred -----ccHHHHHHhchHHhhhheee--cCceeeecccc------ceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 678899999999 7999999 56789998777 99999999864322 111233455688888888
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
.|.. -. +..+..+..|.+|+|+-.|
T Consensus 456 QFD~------fq-IvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 456 QFDE------FQ-IISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eecc------eE-EEeccCCCeEEEEEcCCCC
Confidence 8732 12 3334568899999987544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-25 Score=223.03 Aligned_cols=244 Identities=14% Similarity=0.184 Sum_probs=181.1
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.+++|+| ++.+||+++.|++|+|||+.. ++.+..+ .+|...|++++|+| ++..|++++.|+.|++||+....
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 3577899987 478999999999999999853 5444444 57999999999997 66678888889999999997322
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCeEEEEEecCCeEEEEEccCCCc--eeeecCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLG--TPIRRGF 254 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~ 254 (445)
++..+..+ ..+.++.|+ +++.+|++|+.| |.|++||++.... ..+..|.
T Consensus 610 -------------------------~~~~~~~~--~~v~~v~~~~~~g~~latgs~d-g~I~iwD~~~~~~~~~~~~~h~ 661 (793)
T PLN00181 610 -------------------------SIGTIKTK--ANICCVQFPSESGRSLAFGSAD-HKVYYYDLRNPKLPLCTMIGHS 661 (793)
T ss_pred -------------------------EEEEEecC--CCeEEEEEeCCCCCEEEEEeCC-CeEEEEECCCCCccceEecCCC
Confidence 23334433 578999995 579999999999 7999999987652 4456788
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-------cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
..|.+++|. ++.+|++++.|++|++||++... ...+.+|...+..++|+|++.+|++++ .++.+.. |+
T Consensus 662 ~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~i---w~ 736 (793)
T PLN00181 662 KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFV---YH 736 (793)
T ss_pred CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEE---EE
Confidence 999999997 78899999999999999997532 245668888999999999999998774 3344444 43
Q ss_pred CCCCccccccCc-ccccc--ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 328 KPPSLDAHLLPV-DLPDI--VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~--~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.........+.. ....+ .....+. .|.+++|+|++.+|++++.+ |.|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d------G~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST------GNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC------CcEEEEec
Confidence 321110000000 00011 1122334 69999999999999999988 99999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=195.60 Aligned_cols=235 Identities=21% Similarity=0.382 Sum_probs=184.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+..+.|+|++++|++++.++.+++|++.. ++....+ ..|...+.++.|++++..+++++.++.+.+|++...
T Consensus 52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 125 (289)
T cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLET--GECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--- 125 (289)
T ss_pred cceeEEEECCCCCEEEEEcCCCeEEEEEcCc--ccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---
Confidence 3578999999999999999999999999963 3344444 468889999999999544444444899999999722
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.....+..|. ..+.+++|+|+++++++++.+ |.|++||+++++... +..+...+.
T Consensus 126 ----------------------~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~ 181 (289)
T cd00200 126 ----------------------KCLTTLRGHT-DWVNSVAFSPDGTFVASSSQD-GTIKLWDLRTGKCVATLTGHTGEVN 181 (289)
T ss_pred ----------------------EEEEEeccCC-CcEEEEEEcCcCCEEEEEcCC-CcEEEEEccccccceeEecCccccc
Confidence 2333455554 789999999998888888767 799999998776543 445667999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|+|+++.+++++.++.|++||+++++.. .+..+...+.++.|+|++.+++++. .++.+..|++.
T Consensus 182 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~----------- 249 (289)
T cd00200 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLR----------- 249 (289)
T ss_pred eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcC-----------
Confidence 9999999999999999999999999987764 4447888999999999977777553 34445555442
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
.......+..|. .+.+++|+|++++|++++.| +.+++|+
T Consensus 250 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iw~ 289 (289)
T cd00200 250 --TGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD------GTIRIWD 289 (289)
T ss_pred --CceeEEEccccCCcEEEEEECCCCCEEEEecCC------CeEEecC
Confidence 234455566676 89999999999999999888 8999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=190.18 Aligned_cols=265 Identities=15% Similarity=0.261 Sum_probs=208.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.++...|....+++|+.|..+.++|.. .++.+.++ .||...|+.+.|+|+...+++++.|..|+||.......+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~--s~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKP--SNQILATL-KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecc--hhhhhhhc-cCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 468888888888899999999999999974 35444444 689999999999999878888888999999998744322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC---CC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~---~~ 256 (445)
. ..+.| +.+|+.+..+|.|.||++++.| |+..+.|++++.......++ -.
T Consensus 297 ~-------------------------~~~~h-~~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~~s~v~ 349 (506)
T KOG0289|consen 297 T-------------------------SSRPH-EEPVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDETSDVE 349 (506)
T ss_pred c-------------------------ccccc-cccceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeeccccce
Confidence 2 24455 4899999999999999999999 79999999999886665553 45
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
+++.+|+|||..|.+|..|+.|+|||+.++.. ..+.+|.++|..++|+.+|-||+++++++. +..|++.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLR--------- 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLR--------- 419 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEeh---------
Confidence 89999999999999999999999999998876 678899999999999999999998876543 4555443
Q ss_pred ccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..+...++.... ++.++.|.+.|++|+.++.+ |+||-....+. .+..+..+..|.+..+.+.|..
T Consensus 420 ----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~--------l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~ 486 (506)
T KOG0289|consen 420 ----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD--------LQVYICKKKTK-SWTEIKELADHSGLSTGVRFGE 486 (506)
T ss_pred ----hhcccceeeccccccceeEEEcCCCCeEEeecce--------eEEEEEecccc-cceeeehhhhcccccceeeecc
Confidence 222333343333 69999999999999998655 55555442211 2444556677888889999977
Q ss_pred cCCC
Q 013338 414 HDKF 417 (445)
Q Consensus 414 dg~~ 417 (445)
+-+|
T Consensus 487 ~aq~ 490 (506)
T KOG0289|consen 487 HAQY 490 (506)
T ss_pred cceE
Confidence 7664
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=193.64 Aligned_cols=280 Identities=15% Similarity=0.166 Sum_probs=212.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce----e------------EEe-cCCCCCeeEEEECcCCCcEEE
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA----C------------ILT-SDSQRDVKVLEWRPNGGRSLS 161 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~----~------------~~~-~~~~~~v~~l~~spd~~~l~~ 161 (445)
..+|.+++++|+.++.++++.+++|.=|++.. ++.. . ... ..|...+.+++.|+||++|++
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~t--gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLT--GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhc--CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 45799999999999999999999999998854 3211 0 011 268889999999999999999
Q ss_pred EecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
++.|..|.||+.++... ++.+.+|. +.|.+++|-.....+++++.| ++|++|+
T Consensus 220 gg~d~~v~Iw~~~t~eh-------------------------v~~~~ghr-~~V~~L~fr~gt~~lys~s~D-rsvkvw~ 272 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEH-------------------------VKVFKGHR-GAVSSLAFRKGTSELYSASAD-RSVKVWS 272 (479)
T ss_pred cCCCceEEEecCcccch-------------------------hhcccccc-cceeeeeeecCccceeeeecC-CceEEEe
Confidence 99999999999984333 34467786 899999999888899999999 5999999
Q ss_pred ccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 242 VAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 242 ~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
++.... ..+++|+..|..+.....++.+-+|+.|+++++|++.......+.++.+.+.|++|-.+.. +++| ++++.+
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H-fvsG-SdnG~I 350 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH-FVSG-SDNGSI 350 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccc-eeec-cCCceE
Confidence 987655 5678899999999988888888888899999999996655566778888999999986654 4544 344667
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
..|.++.+.+-.....-.-.......+....+|++++..|...++|+||.+ |.|++|-+..+-. ...++..+.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~------G~vrLW~i~~g~r-~i~~l~~ls 423 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS------GCVRLWKIEDGLR-AINLLYSLS 423 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC------CceEEEEecCCcc-ccceeeecc
Confidence 777766554322111000000011112222389999999999999999988 9999999998743 244454444
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
-.+.|++++|+++|++
T Consensus 424 -~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKR 439 (479)
T ss_pred -cccEEEEEEEccCCCE
Confidence 4678999999999984
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=205.44 Aligned_cols=228 Identities=15% Similarity=0.192 Sum_probs=185.6
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+.++|+.++|+|++.++++|+.|..|++|+.. +.+++.++ .+|-+-|+.+.|++.-..+++++.|.+|+||+..+
T Consensus 50 HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-- 124 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--TRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-- 124 (1202)
T ss_pred cCCccceeeecCCCCeEEecCCccEEEEEecc--cceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccC--
Confidence 35689999999999999999999999999984 45565655 48999999999999988999999999999999982
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-----------
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----------- 246 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----------- 246 (445)
. .++..+.||. ..|.|..|+|...+++++|.| .+|++||+..-+
T Consensus 125 -------r----------------~~iavltGHn-HYVMcAqFhptEDlIVSaSLD-QTVRVWDisGLRkk~~~pg~~e~ 179 (1202)
T KOG0292|consen 125 -------R----------------KCIAVLTGHN-HYVMCAQFHPTEDLIVSASLD-QTVRVWDISGLRKKNKAPGSLED 179 (1202)
T ss_pred -------C----------------ceEEEEecCc-eEEEeeccCCccceEEEeccc-ceEEEEeecchhccCCCCCCchh
Confidence 2 4788899996 799999999999999999999 599999986320
Q ss_pred -------------------ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEEC
Q 013338 247 -------------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWD 304 (445)
Q Consensus 247 -------------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~s 304 (445)
...+.+|...|+-++|+|.-..|++|+.|+.|++|.+...+. .+..+|.+.|.++-|+
T Consensus 180 ~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh 259 (1202)
T KOG0292|consen 180 QMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH 259 (1202)
T ss_pred hhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec
Confidence 011335778899999999999999999999999999876554 5677999999999999
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY 369 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s 369 (445)
|...+|++. +. ++.+++|+.. ....++++.... ..+.++-+|..+++|+|-
T Consensus 260 p~q~lIlSn-sE---DksirVwDm~----------kRt~v~tfrrendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 260 PHQDLILSN-SE---DKSIRVWDMT----------KRTSVQTFRRENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred CccceeEec-CC---CccEEEEecc----------cccceeeeeccCCeEEEEEecCCcceeeeec
Confidence 999988865 33 4555555543 334455554433 778888899988877653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=194.98 Aligned_cols=274 Identities=12% Similarity=0.130 Sum_probs=208.4
Q ss_pred CCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.|++=+|.. ..+|+|+.||.|+|||+.. ..+...+ ..|.+.|+.|++.. ..++++|.|.+|+.|.++.+
T Consensus 67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-- 139 (433)
T KOG0268|consen 67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-- 139 (433)
T ss_pred cccchhhcCcchhhhhhccccCceEEEEehhh--hhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeeccCC--
Confidence 358888888877 7899999999999999953 4444555 57999999999987 58999999999999998731
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v 257 (445)
..+++.+ +..+..+.-+..+..++++|. .|.|||....... .+.-....|
T Consensus 140 ------------------------p~~tilg--~s~~~gIdh~~~~~~FaTcGe---~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 140 ------------------------PLHTILG--KSVYLGIDHHRKNSVFATCGE---QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred ------------------------cceeeec--cccccccccccccccccccCc---eeeecccccCCccceeecCCCce
Confidence 1222333 256677777767778888864 5999999766554 344566789
Q ss_pred eEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++.|+|... .|++|..|+.|.+||+++.+..+-......-+.++|+| ..+.+++++.|..++.+++..
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~--------- 260 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN--------- 260 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhh---------
Confidence 9999999754 56777799999999999988754444455667899999 556666666666666666543
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
-..++....+|. .|.+++|||.|+-+++||.| .+|+||.++.+.-... ....--+.|.+|.||-|.
T Consensus 261 ---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD------ksIRIf~~~~~~SRdi----YhtkRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 261 ---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD------KSIRIFPVNHGHSRDI----YHTKRMQHVFCVKYSMDS 327 (433)
T ss_pred ---hcccchhhcccceeEEEeccCCCcchhcccccc------ceEEEeecCCCcchhh----hhHhhhheeeEEEEeccc
Confidence 234566778888 89999999999999999988 9999999987654321 111224578999999999
Q ss_pred CCCCCCeEEEEecCeeeEeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+| +..|.++|.|.+|.-
T Consensus 328 ky-----i~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 328 KY-----IISGSDDGNVRLWKA 344 (433)
T ss_pred cE-----EEecCCCcceeeeec
Confidence 87 667889999988753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=191.92 Aligned_cols=241 Identities=17% Similarity=0.265 Sum_probs=186.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
+.|.|+.| +.+.|++|+.|.+|+|||++ +++.+.++ .+|...|..+.|+. +.+++++.|.++.+||+..+...
T Consensus 238 GSVLCLqy--d~rviisGSSDsTvrvWDv~--tge~l~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 238 GSVLCLQY--DERVIVSGSSDSTVRVWDVN--TGEPLNTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred CcEEeeec--cceEEEecCCCceEEEEecc--CCchhhHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH
Confidence 34777777 55699999999999999996 47777766 46999999999986 48999999999999999844321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.+.+.+.+|. ..|+.+.|+ .++|++++.|. +|++|++.+.+... +.+|+..|.
T Consensus 311 ----------------------t~rrVLvGHr-AaVNvVdfd--~kyIVsASgDR-TikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 311 ----------------------TLRRVLVGHR-AAVNVVDFD--DKYIVSASGDR-TIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred ----------------------HHHHHHhhhh-hheeeeccc--cceEEEecCCc-eEEEEeccceeeehhhhcccccce
Confidence 1344577886 899999995 46999999995 99999999998865 557888999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
|+.+ .|+++++|+.|.+|++||+..|.+ ..+.+|..-|.++.|. .+.|++| ..++.+++|+.....+.. -
T Consensus 365 ClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSG----aYDGkikvWdl~aaldpr-a 435 (499)
T KOG0281|consen 365 CLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSG----AYDGKIKVWDLQAALDPR-A 435 (499)
T ss_pred ehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeec----cccceEEEEecccccCCc-c
Confidence 9888 689999999999999999999998 6788999999999995 5667755 334445555432211110 0
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+...-++..+..|. .|..+.| |...+++++.| .+|.+||...+..
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd------dtILiWdFl~~~~ 481 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD------DTILIWDFLNGPP 481 (499)
T ss_pred cccchHHHhhhhccceeEEEee--cceEEEeccCC------CeEEEEEcCCCCc
Confidence 11223456666777 8999998 56678888887 8999999987544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=188.43 Aligned_cols=264 Identities=14% Similarity=0.269 Sum_probs=188.9
Q ss_pred CcCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCccee-------EEecCCCCCeeEEEECcCC-CcEEEEecCCcE
Q 013338 98 PEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDAC-------ILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGI 168 (445)
Q Consensus 98 ~~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i 168 (445)
+..+|+.+..-|.. ..+|+.+..+.+.|||.......... ....+|...-++|+|++.. ..|++++.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 34556777777755 45667788999999998754333222 1335788888899999863 457777788999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCC--
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-- 245 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~-- 245 (445)
++||+......... ......+.+|. ..|..++|++ +..++++++.| +.+.|||++++
T Consensus 203 ~lwdi~~~~~~~~~------------------~~p~~~~~~h~-~~VeDV~~h~~h~~lF~sv~dd-~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 203 CLWDINAESKEDKV------------------VDPKTIFSGHE-DVVEDVAWHPLHEDLFGSVGDD-GKLMIWDTRSNTS 262 (422)
T ss_pred EEEeccccccCCcc------------------ccceEEeecCC-cceehhhccccchhhheeecCC-CeEEEEEcCCCCC
Confidence 99999854432111 12345577885 8999999999 55667777777 79999999953
Q ss_pred Cc-eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 246 LG-TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 246 ~~-~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
+. ....+|.+.|+|++|+|- +..||+|+.|++|.+||+|+.+. ..+.+|...|.++.|+|....++++++.+....
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 22 345678999999999995 56678999999999999998665 567799999999999999888876666666666
Q ss_pred EEEeccCCCCcc-ccccCccccccccccCCC-ccceEEeCCCCCEEEE-EEcCCCcccceEEEEEEccC
Q 013338 322 SIHFASKPPSLD-AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~-~s~d~~d~~d~~i~vwd~~~ 387 (445)
+|++........ ....+...+.+..-.||. .|..+.|+|+..++++ ++.| +.+.||+...
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------N~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------NILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------ceEEEeeccc
Confidence 665543321110 000011222345556788 8999999999877554 4444 9999999873
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=194.79 Aligned_cols=246 Identities=17% Similarity=0.349 Sum_probs=178.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE------------EecCCCCCeeEEEECcCCC-cEEEEecCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI------------LTSDSQRDVKVLEWRPNGG-RSLSVGCKGG 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~------------~~~~~~~~v~~l~~spd~~-~l~~~~~dg~ 167 (445)
.|++++|++.|..|++.+.....+|+|.+ |..+.. .+.+|...+++.+|+|+.+ .+++++.||+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRd---G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRD---GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccC---CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 59999999999999999999999999964 433322 2458999999999999865 4777888999
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
++||+++.......+.. ....+...-.++.++|+|||++||+|..| |.|.+|+......
T Consensus 293 lRiWdv~~~k~q~qVik--------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc~D-GSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIK--------------------TKPAGGKRVPVTSCAWNRDGKLIAAGCLD-GSIQIWDKGSRTV 351 (641)
T ss_pred EEEEecCCchhheeEEe--------------------eccCCCcccCceeeecCCCcchhhhcccC-CceeeeecCCccc
Confidence 99999984433222111 01112223578999999999999999999 8999999754432
Q ss_pred e----eeecCCC--CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccC--CCCCeeEEEECCCCCeEEEEEcC-
Q 013338 248 T----PIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSS--TSGFVTGATWDPEGRMILLAFAG- 316 (445)
Q Consensus 248 ~----~~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~l~~~~~~- 316 (445)
. ....|.. .|+|+.||++|++|++-+.|+++++||++..+. ....+ ....-+.++|||+.++|++|.+.
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 1 2234544 899999999999999999999999999998765 22222 23345788999999999987542
Q ss_pred -CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 317 -SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 317 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
...-+.+.+.+.. +...+..+.-.. .|..+.|+|.-+.|+.++.| |.++||--.
T Consensus 432 ~~~~~g~L~f~d~~----------t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd------G~~~vyYdp 487 (641)
T KOG0772|consen 432 NGMTAGTLFFFDRM----------TLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD------GTAHVYYDP 487 (641)
T ss_pred CCCCCceEEEEecc----------ceeeEEEecCCCceEEEEeecchhhheeeecCC------CceEEEECc
Confidence 1223344443321 344444454445 78999999998888888877 788876433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=197.40 Aligned_cols=223 Identities=14% Similarity=0.208 Sum_probs=163.7
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCC-----cceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw 171 (445)
...|.+++|+| ++.+||+|+.|++|+||++..... ..+.. ..+|...|.+++|+|++ ..|++++.|+.|+||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 45799999999 889999999999999999964211 12233 35899999999999986 467777889999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-e
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~ 250 (445)
|+... .....+.+|. ..|.+++|+|+|++|++++.| |.|++||+++++... +
T Consensus 154 Dl~tg-------------------------~~~~~l~~h~-~~V~sla~spdG~lLatgs~D-g~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 154 DVERG-------------------------KAVEVIKCHS-DQITSLEWNLDGSLLCTTSKD-KKLNIIDPRDGTIVSSV 206 (493)
T ss_pred ECCCC-------------------------eEEEEEcCCC-CceEEEEEECCCCEEEEecCC-CEEEEEECCCCcEEEEE
Confidence 99832 2344566775 789999999999999999999 799999999887644 4
Q ss_pred ecCCCC-eeEEEEcCCCCEEEEEe----cCCeEEEEeCCCCCc-cc-cc-CCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 251 RRGFGG-LSILKWSPTGDYFFAAK----FDGTFYLWETNTWTS-EP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 251 ~~~~~~-v~~~~~sp~g~~l~~~~----~dg~v~iwd~~~~~~-~~-~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
..|.+. +..+.|.+++..+++++ .|+.|++||+++... .. .. .....+....|+++++++++++.+++.++.
T Consensus 207 ~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 207 EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 455443 45788999888887654 478999999987553 21 11 233456667899999999988766666777
Q ss_pred EEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASG 362 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g 362 (445)
|++.+. ..+..... +. .+..++|.|.-
T Consensus 287 wdl~~~-------------~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 287 FELMNE-------------RLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEeeCC-------------ceEEEeeccCCCCCcceEecccc
Confidence 766432 22222222 22 57888888853
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=197.89 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=198.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
-|+++.+.|||+.|++|+.-.++.|||+...+......++ ...-.+++|+.+||.+..+++..||.|.|||+.
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLh------ 539 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLH------ 539 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcc------
Confidence 4899999999999999999999999999876655444443 234568899999998888888999999999998
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.-.+++.+++|. +.+.|+.+++||..|-+|+.|+ +|+.||++.+...........|.++
T Consensus 540 -------------------nq~~VrqfqGht-DGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIfSL 598 (705)
T KOG0639|consen 540 -------------------NQTLVRQFQGHT-DGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIFSL 598 (705)
T ss_pred -------------------cceeeecccCCC-CCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhheec
Confidence 224678899997 8999999999999999999995 9999999999877777778999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
..+|++.+|++|.+++.+.|......+...+..|...|.++.|++.|+++++. +++..+..|..+ -
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt----GkDnlLnawrtP----------y 664 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST----GKDNLLNAWRTP----------Y 664 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec----CchhhhhhccCc----------c
Confidence 99999999999999999999988887777788899999999999999999976 445555655443 2
Q ss_pred ccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 341 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 341 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
+..+...+....|.++.+|.|.+++++||.| ....||.+
T Consensus 665 GasiFqskE~SsVlsCDIS~ddkyIVTGSGd------kkATVYeV 703 (705)
T KOG0639|consen 665 GASIFQSKESSSVLSCDISFDDKYIVTGSGD------KKATVYEV 703 (705)
T ss_pred ccceeeccccCcceeeeeccCceEEEecCCC------cceEEEEE
Confidence 3334444444589999999999999999877 66777765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=189.89 Aligned_cols=235 Identities=14% Similarity=0.154 Sum_probs=186.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~ 179 (445)
.|.++.|..||++||+|...|.|+|||.. + +.+.....+|..+|..+.|+|+++.+++.++| +.+++||+...
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k--~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a--- 143 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMK--S-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA--- 143 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccc--c-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---
Confidence 58999999999999999999999999953 2 32333346899999999999998888877766 78889999822
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCC-CceeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v 257 (445)
.....+.+|. +.|.|.+|+|. +..+++|++| |.|++||++.. .......|..+|
T Consensus 144 ----------------------~v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYD-g~vrl~DtR~~~~~v~elnhg~pV 199 (487)
T KOG0310|consen 144 ----------------------YVQAELSGHT-DYVRCGDISPANDHIVVTGSYD-GKVRLWDTRSLTSRVVELNHGCPV 199 (487)
T ss_pred ----------------------EEEEEecCCc-ceeEeeccccCCCeEEEecCCC-ceEEEEEeccCCceeEEecCCCce
Confidence 1234577886 89999999995 4578899999 79999999987 556677899999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-c-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.++.+-|.|..|++++ ...|++||+-++.. . ....|...|+|+++..++..|+++ +-++.+++++..
T Consensus 200 e~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~----sLD~~VKVfd~t------ 268 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG----SLDRHVKVFDTT------ 268 (487)
T ss_pred eeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec----ccccceEEEEcc------
Confidence 9999999999999988 45799999996554 2 334599999999999999998876 333444443321
Q ss_pred ccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 336 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+.+.+..+.-..+|.+++.+|+++.++.|-.+ |.+.+-+..
T Consensus 269 ----~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn------Glv~~rr~~ 309 (487)
T KOG0310|consen 269 ----NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN------GLVSIRRRE 309 (487)
T ss_pred ----ceEEEEeeecccceeeEEecCCCceEEEeccc------ceeeeehhh
Confidence 44555566666689999999999999999887 766666443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=205.92 Aligned_cols=243 Identities=19% Similarity=0.331 Sum_probs=186.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccC-C-------CCc-------ceeEEecCCCCCeeEEEECcCCCcEEEEe
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED-S-------EGK-------DACILTSDSQRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-~-------~~~-------~~~~~~~~~~~~v~~l~~spd~~~l~~~~ 163 (445)
...|+|+.|+|||++||+|+.|+.|.||.... + +|. .......+|...|..++|+|++..+++++
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence 35699999999999999999999999999862 0 000 12234468999999999999988999999
Q ss_pred cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.|++|.||+.. .+.++..+++|+ ..|..+.|.|-|++||+-+.| ++|++|++.
T Consensus 149 ~DnsViiwn~~-------------------------tF~~~~vl~~H~-s~VKGvs~DP~Gky~ASqsdD-rtikvwrt~ 201 (942)
T KOG0973|consen 149 LDNSVIIWNAK-------------------------TFELLKVLRGHQ-SLVKGVSWDPIGKYFASQSDD-RTLKVWRTS 201 (942)
T ss_pred ccceEEEEccc-------------------------cceeeeeeeccc-ccccceEECCccCeeeeecCC-ceEEEEEcc
Confidence 99999999988 335777899997 899999999999999999999 599999976
Q ss_pred CCCcee-eec------CCCCeeEEEEcCCCCEEEEEec----CCeEEEEeCCCCCc-ccccCCCCCeeEEEECCC-----
Q 013338 244 QGLGTP-IRR------GFGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE----- 306 (445)
Q Consensus 244 ~~~~~~-~~~------~~~~v~~~~~sp~g~~l~~~~~----dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~----- 306 (445)
+-.... +.+ ....+..+.|||||++|++... -.++.|.+..+.+. ..+.+|.+++.++.|+|.
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERN 281 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccc
Confidence 643322 222 2345788999999999987643 34799999988886 778899999999999971
Q ss_pred ---C-------Ce-EEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 307 ---G-------RM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 307 ---~-------~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
| .| +++.++. ++.+.+|... ..+++..... .. .|.+++|+|||..|+.+|.|
T Consensus 282 ~~ng~~~~~~~~y~i~AvgSq---DrSlSVW~T~----------~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D-- 346 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVGSQ---DRSLSVWNTA----------LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD-- 346 (942)
T ss_pred cccCCccCCCcceEEEEEecC---CccEEEEecC----------CCCchhhhhhhhcCceeeeeEcCCCCeEEEEecC--
Confidence 1 11 4444444 4555555431 1222222211 11 79999999999999999998
Q ss_pred cccceEEEEEEccC
Q 013338 374 DIYKGLIAIYDARR 387 (445)
Q Consensus 374 d~~d~~i~vwd~~~ 387 (445)
|+|.++..+.
T Consensus 347 ----GtV~~i~Fee 356 (942)
T KOG0973|consen 347 ----GTVALIHFEE 356 (942)
T ss_pred ----CeEEEEEcch
Confidence 9999999874
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-24 Score=182.83 Aligned_cols=240 Identities=17% Similarity=0.231 Sum_probs=189.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|..+.|+|+...+++++.|..|+||...... . ......|..+|+.+..+|.|.+|++++.|++..+.|++.+...
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~-~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVWSVPLSS--E-PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEeecccccc--C-ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 369999999999999999999999999986533 2 2333579999999999999999999999999999999833322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~ 258 (445)
.. ..-. ..+-.+++.+|+|||..+.+|..| |.|++||+..+.. ..+.+|.+.|.
T Consensus 339 t~-----------------------vs~~-~s~v~~ts~~fHpDgLifgtgt~d-~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 339 TV-----------------------VSDE-TSDVEYTSAAFHPDGLIFGTGTPD-GVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred EE-----------------------Eeec-cccceeEEeeEcCCceEEeccCCC-ceEEEEEcCCccccccCCCCCCcee
Confidence 11 1111 112468999999999999999999 7999999998765 44667899999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++|+.+|-+|++++.|+.|++||++..+. +++. .....+.+++|.+.|.+|+++ +.+..++.+.-..+
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k-------- 464 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTK-------- 464 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccc--------
Confidence 999999999999999999999999998776 3332 233479999999999999977 33344443331111
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.+.++..+..|. ..+.+.|..+.+++++++.| ..++++.+
T Consensus 465 ---~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd------~~l~~~a~ 505 (506)
T KOG0289|consen 465 ---SWTEIKELADHSGLSTGVRFGEHAQYLASTSMD------AILRLYAL 505 (506)
T ss_pred ---cceeeehhhhcccccceeeecccceEEeeccch------hheEEeec
Confidence 456677777777 78899999999999999988 77777654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=179.34 Aligned_cols=220 Identities=14% Similarity=0.280 Sum_probs=177.0
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC---CCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY---PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
..|..++++.+|+|||..+++++.|..|+|.|++. +..+..+..+ ....+-.+++++..|. ..|++
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~----------~~qa~hPvIRTlYDH~-devn~ 177 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG----------DTQARHPVIRTLYDHV-DEVND 177 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC----------CcccCCceEeehhhcc-Ccccc
Confidence 46999999999999988888888899999999871 1111111111 1111224788899997 89999
Q ss_pred EEECCCCCeEEEEEecCCeEEEEEccCCCce---eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----cc
Q 013338 218 LSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EP 290 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~ 290 (445)
+.|+|....|++++.| ++|++||....... ..+.....|.++.|+|.|.+|++|....++++||+.+.++ .+
T Consensus 178 l~FHPre~ILiS~srD-~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 178 LDFHPRETILISGSRD-NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred eeecchhheEEeccCC-CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 9999999999999999 69999999865432 3334567899999999999999999999999999999887 23
Q ss_pred ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc-CCC--ccceEEeCCCCCEEEE
Q 013338 291 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ--GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~~~~~sp~g~~l~~ 367 (445)
-..|.+.|+++.+++.+++.+++ .+++.+++|+.- ..+++.++. .|. .|.+..|+.+|+|+++
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTa----SkDG~IklwDGV----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs 322 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTA----SKDGAIKLWDGV----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILS 322 (430)
T ss_pred ccccccceeEEEecCCccEEEEe----ccCCcEEeeccc----------cHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence 44788999999999999988877 556778888753 667777775 355 7999999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
.+.| ..+++|.+.+++.+.
T Consensus 323 SG~D------S~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 323 SGKD------STVKLWEISTGRMLK 341 (430)
T ss_pred cCCc------ceeeeeeecCCceEE
Confidence 9888 899999999987764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=197.17 Aligned_cols=270 Identities=18% Similarity=0.221 Sum_probs=216.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...+.+..|+ ..++++++.+.+|++|+.. ++..+..-..+|.+.|+++++..-+..+++++.|.++++||..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~--~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~---- 279 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLN--NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS---- 279 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecc--cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC----
Confidence 3467888888 5678889999999999984 4666666457999999999998755788888889999999988
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v 257 (445)
++ .|...+.+|. ..|.++...+ ..+++|+.|. +|++|++.++....+.. |.+.|
T Consensus 280 -----sg----------------~C~~~l~gh~-stv~~~~~~~--~~~~sgs~D~-tVkVW~v~n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 280 -----TG----------------ECTHSLQGHT-SSVRCLTIDP--FLLVSGSRDN-TVKVWDVTNGACLNLLRGHTGPV 334 (537)
T ss_pred -----CC----------------cEEEEecCCC-ceEEEEEccC--ceEeeccCCc-eEEEEeccCcceEEEeccccccE
Confidence 33 4778888886 7888887754 5778889995 99999999999988776 99999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++..+ +.++++|+.|++|++||+.++++ ..+.+|...|.++.+... ..++.+ ..++.+++|+..
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg----s~D~~IkvWdl~------- 400 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSG----SLDTTIKVWDLR------- 400 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEee----eeccceEeecCC-------
Confidence 999997 88999999999999999999988 678899999999988765 666655 233556666543
Q ss_pred cCccc-cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC-CCCCCCceeEee
Q 013338 337 LPVDL-PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSF 413 (445)
Q Consensus 337 ~~~~~-~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 413 (445)
+. +++.++.+|. -+..+. ..+++|++++.| ++|++||..+++.. +.+.+ |...|+.+++.
T Consensus 401 ---~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD------~~Ik~WD~~~~~~~-----~~~~~~~~~~v~~l~~~- 463 (537)
T KOG0274|consen 401 ---TKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSAD------GTIKLWDAEEGECL-----RTLEGRHVGGVSALALG- 463 (537)
T ss_pred ---chhhhhhhhcCCcccccccc--cccceeEecccc------ccEEEeecccCcee-----eeeccCCcccEEEeecC-
Confidence 33 6888999998 555444 467899999988 99999999987766 35666 66778777765
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+.+...+|.+.+|++.
T Consensus 464 ------~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 464 ------KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ------cceEEEEecCCeeEEEecc
Confidence 1346677789999999765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-25 Score=183.21 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=196.2
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+|.|+.||.|...||+|+.||.|+||.+. +|.+++.+...|...|+++.||.|+..+++++.|.++++.-+..+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~--tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG---- 338 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIE--TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG---- 338 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEe--cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----
Confidence 69999999999999999999999999995 588888888899999999999999999999999999999988833
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CCCCe
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGL 257 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~~~v 257 (445)
++++.+++|. ..|+...|.+||..+++++.| |+|++|+..+.++...+. ....|
T Consensus 339 ---------------------K~LKEfrGHs-Syvn~a~ft~dG~~iisaSsD-gtvkvW~~KtteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 339 ---------------------KCLKEFRGHS-SYVNEATFTDDGHHIISASSD-GTVKVWHGKTTECLSTFKPLGTDYPV 395 (508)
T ss_pred ---------------------hhHHHhcCcc-ccccceEEcCCCCeEEEecCC-ccEEEecCcchhhhhhccCCCCcccc
Confidence 3666788996 899999999999999999999 799999999988855443 35678
Q ss_pred eEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+++..-|. ...+++|...++|+|.++...-.+.+. ...+...+.+.+|.|.++++. ..+...+.+.+.
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci-gED~vlYCF~~~------- 467 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI-GEDGVLYCFSVL------- 467 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE-ccCcEEEEEEee-------
Confidence 88888775 567889999999999999876655544 345566778899999999855 344555555543
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
.++.-.++..|. .+..++-+|..+.||+-++| |.+++|.
T Consensus 468 ------sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED------gllKLWk 507 (508)
T KOG0275|consen 468 ------SGKLERTLPVHEKDVIGLTHHPHQNLLASYSED------GLLKLWK 507 (508)
T ss_pred ------cCceeeeeecccccccccccCcccchhhhhccc------chhhhcC
Confidence 455556667777 78899999999999998888 9999995
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=176.16 Aligned_cols=301 Identities=14% Similarity=0.178 Sum_probs=221.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC----
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY---- 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~---- 175 (445)
..|+.++.......+.+++.|.+.+||.++ ++.++... .+|.+.|++++|++.+..+++++.|++..||....
T Consensus 149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~E--sg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 149 DGIWHVAADSTQPICGTASADHTARIWSLE--SGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred cceeeehhhcCCcceeecccccceeEEeec--cccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 468888888777889999999999999996 47777666 58999999999999988888888999999997331
Q ss_pred CC--Cccccc-------cccccccccccCCCC--CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC
Q 013338 176 PG--NAASVR-------SGAASFLGALSRGPG--TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 176 ~~--~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
+. .+.... +.....+.......+ .--..+..+.+|. +.|.+..|-..|+.+++++.|. +..+||+++
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~-~vV~a~dWL~gg~Q~vTaSWDR-TAnlwDVEt 303 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR-AVVSACDWLAGGQQMVTASWDR-TANLWDVET 303 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc-cceEehhhhcCcceeeeeeccc-cceeeeecc
Confidence 11 000000 000001111111111 1123566788886 8999999999999999999995 999999999
Q ss_pred CCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 245 GLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 245 ~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
++... +.+|....+.++-+|..+++++.+.|.+.++||.+..-. ..+.+|...|+++.|..+.+.+ +++++..+.
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vV--SgSDDrTvK 381 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVV--SGSDDRTVK 381 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCcee--ecCCCceEE
Confidence 98854 667899999999999999999999999999999984322 4678999999999999887644 334555556
Q ss_pred EEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
+|++.+. ..++.++....+++.++.+..++.||.--.+ ..|++||+....+. --|...-++
T Consensus 382 vWdLrNM------------RsplATIRtdS~~NRvavs~g~~iIAiPhDN------RqvRlfDlnG~Rla-RlPrtsRqg 442 (481)
T KOG0300|consen 382 VWDLRNM------------RSPLATIRTDSPANRVAVSKGHPIIAIPHDN------RQVRLFDLNGNRLA-RLPRTSRQG 442 (481)
T ss_pred Eeeeccc------------cCcceeeecCCccceeEeecCCceEEeccCC------ceEEEEecCCCccc-cCCcccccc
Confidence 6655432 2345666666689999999888888775443 78999999876654 333345568
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
|..-|.+++|+.+.-. -.++++|++
T Consensus 443 HrRMV~c~AW~eehp~--cnLftcGFD 467 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPA--CNLFTCGFD 467 (481)
T ss_pred cceeeeeeeccccCcc--ccccccccc
Confidence 9999999999865432 335666654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=182.98 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=184.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEEEccCCCCCccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
+..+++++.|+.+++||++ +++....+. .+ ..+.+++|+|+++.++++ +.++.|++||.....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~--t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~------------ 64 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA--TLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE------------ 64 (300)
T ss_pred CcEEEEecCCCEEEEEECC--CCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc------------
Confidence 3568889999999999985 355555543 23 447889999998777555 456999999987322
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l 269 (445)
....+..+ ..+..++|+|+++.+++++.+++.+++||+.+++..........+.+++|+|+|+++
T Consensus 65 -------------~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 65 -------------VIGTLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred -------------EEEeccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEE
Confidence 12223222 245678999999988766543379999999987665544445567889999999999
Q ss_pred EEEecCC-eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc
Q 013338 270 FAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348 (445)
Q Consensus 270 ~~~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
+++..++ .+.+||.++++..........+..++|+|+++++++++..++.+..|++... +.+..+.
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-------------~~~~~~~ 196 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-------------KVIKKIT 196 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-------------eeeeeee
Confidence 9888765 5778899887663322233456789999999998776555555555554321 1111111
Q ss_pred C-------CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCC
Q 013338 349 G-------SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 420 (445)
Q Consensus 349 ~-------~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~ 420 (445)
. .. ....++|+|++++++++..+. +.+.+||+++++... .+ .+...+.+++|+|+|++
T Consensus 197 ~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~-----~~-~~~~~~~~~~~~~~g~~--- 262 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLD-----YL-LVGQRVWQLAFTPDEKY--- 262 (300)
T ss_pred ecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEE-----EE-EeCCCcceEEECCCCCE---
Confidence 0 11 345789999999876654331 679999998877652 22 23457889999999985
Q ss_pred CeEEEE-ecCeeeEeeeee
Q 013338 421 PLLSVC-WSSGFCCTYPLI 438 (445)
Q Consensus 421 ~~l~~~-~~~G~v~~~~~~ 438 (445)
|.++ -.+|.|.+|++.
T Consensus 263 --l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 263 --LLTTNGVSNDVSVIDVA 279 (300)
T ss_pred --EEEEcCCCCeEEEEECC
Confidence 4444 458899988875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=190.19 Aligned_cols=270 Identities=16% Similarity=0.178 Sum_probs=208.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCccee-EEecCCCCCeeE-EEECc-CCCcEEEEecCCcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKV-LEWRP-NGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~-l~~sp-d~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+|..++..+. ..+++++.||++++|+-.. ..... ....+|.+-|.. +++-+ ++.++++++.|..|.+|.....
T Consensus 16 DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~--~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~- 91 (745)
T KOG0301|consen 16 DVRAVAVTDG-VCIISGSRDGTVKVWAKKG--KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA- 91 (745)
T ss_pred chheeEecCC-eEEeecCCCCceeeeeccC--cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC-
Confidence 3666665544 4788899999999998632 22222 233456666665 77764 5456999999999999998722
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.....+++|. ..|++++...++. +++||.|. ++++|....- ...+.+|...|
T Consensus 92 ------------------------~P~~~LkgH~-snVC~ls~~~~~~-~iSgSWD~-TakvW~~~~l-~~~l~gH~asV 143 (745)
T KOG0301|consen 92 ------------------------EPLYTLKGHK-SNVCSLSIGEDGT-LISGSWDS-TAKVWRIGEL-VYSLQGHTASV 143 (745)
T ss_pred ------------------------Cchhhhhccc-cceeeeecCCcCc-eEeccccc-ceEEecchhh-hcccCCcchhe
Confidence 2344578886 8999999888877 99999995 9999986533 23377899999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++++.-|.+ .+++|+.|.+|++|.-. ...+.+.+|...|+.+++-+++.++- + +++ +.+++|+.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~flS-c-sND---g~Ir~w~~--------- 207 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFLS-C-SND---GSIRLWDL--------- 207 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeEe-e-cCC---ceEEEEec---------
Confidence 999999988 89999999999999762 23478889999999999998877654 3 344 45555543
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
+++.+.++.+|. -+++++..+++..++++++| +++++|+.. ++ .+.+.-....|+++.+-++|.
T Consensus 208 --~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED------rtlriW~~~--e~-----~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 208 --DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED------RTLRIWKKD--EC-----VQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred --cCceeeeeeccceEEEEEEecCCCCeEEEecCC------ceEEEeecC--ce-----EEEEecCccceEEEEEeeCCC
Confidence 678889999999 89999988888999999998 999999987 22 234555566899999988887
Q ss_pred CCCCCeEEEEecCeeeEeeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+.+|.+||+|++|...-
T Consensus 273 ------Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 ------IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ------EEEeccCceEEEEEecc
Confidence 67889999999998763
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=161.80 Aligned_cols=244 Identities=13% Similarity=0.183 Sum_probs=178.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce--eEEecCCCCCeeEEEECc---CCCcEEEEecCCcEEEE--
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRP---NGGRSLSVGCKGGICIW-- 171 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~l~~sp---d~~~l~~~~~dg~i~vw-- 171 (445)
...|+|.+|||+|++||+|++|.+|++.-++..+.... ..-..-|.+.|+.++|-. .++.+++++..|..+||
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe
Confidence 45799999999999999999999999987765432211 111235999999999953 34567776655555555
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
|...++ -...+.+|. +.|.++ ++-+|-.+++|+.|. +|++||++-..+....
T Consensus 169 dc~~g~-------------------------~~~a~sght-ghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l 220 (350)
T KOG0641|consen 169 DCGRGQ-------------------------GFHALSGHT-GHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTL 220 (350)
T ss_pred ecCCCC-------------------------cceeecCCc-ccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeec
Confidence 444221 234467776 666665 334678999999994 9999999987665543
Q ss_pred c---C-----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 252 R---G-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 252 ~---~-----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
. | ...|.+++..|.|++|++|-.|....+||++.+.. +.+..|...|.++.|+|...+++++ ..+..
T Consensus 221 ~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~----syd~~ 296 (350)
T KOG0641|consen 221 DNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC----SYDMK 296 (350)
T ss_pred cCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe----cccce
Confidence 2 1 25799999999999999999999999999999988 6788999999999999999999876 33444
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++.+...... ..-++..+..|. .+..+.|+|..-.+++.+.| .++.+|-+.
T Consensus 297 ikltdlqgdla------~el~~~vv~ehkdk~i~~rwh~~d~sfisssad------kt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLA------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD------KTATLWALN 349 (350)
T ss_pred EEEeecccchh------hcCceEEEEeccCceEEEEecCccceeeeccCc------ceEEEeccC
Confidence 44443322111 111233344566 78899999998888888887 899999764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-24 Score=171.32 Aligned_cols=248 Identities=17% Similarity=0.236 Sum_probs=190.5
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
+...|.+.|..+...--|++|+++++|++|+|+.++..+. -.++.++.+|. ++|+.+
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~----------------------s~ll~~L~Gh~-GPVwqv 62 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ----------------------SKLLAELTGHS-GPVWKV 62 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC----------------------ceeeeEecCCC-CCeeEE
Confidence 3346888999888888889999999999999999984332 24677899996 899999
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCCCcee---eecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCC-c--
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT-S-- 288 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~-~-- 288 (445)
+|.. -|.+||++++| |.|.||.-.+++..+ ...|...|++++|.|. |-.|++++.||.|.|.+.++.. .
T Consensus 63 ~wahPk~G~iLAScsYD-gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t 141 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYD-GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT 141 (299)
T ss_pred eecccccCcEeeEeecC-ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc
Confidence 9965 79999999999 799999988886543 3457899999999996 6788999999999999988752 1
Q ss_pred -ccccCCCCCeeEEEECCC---C-----------CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-c
Q 013338 289 -EPWSSTSGFVTGATWDPE---G-----------RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G 352 (445)
Q Consensus 289 -~~~~~~~~~v~~~~~sp~---~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 352 (445)
+....|.-.|++++|.|. | +.|+++ +.+..+.+|..... ....-.++.+|. .
T Consensus 142 ~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg----GcDn~VkiW~~~~~--------~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 142 SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG----GCDNLVKIWKFDSD--------SWKLERTLEGHKDW 209 (299)
T ss_pred hhhhhccccccceeeecCcCCCccccccCcccccceeecc----CCccceeeeecCCc--------chhhhhhhhhcchh
Confidence 344578889999999986 4 346654 33455555543211 234445688999 9
Q ss_pred cceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCC-CeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 353 IEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 353 v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
|.+++|.|.- .+||++|.| |++.||..+.. +.-+.+ .+......++.+.||+.|+ +|+++.
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqD------g~viIwt~~~e~e~wk~t---ll~~f~~~~w~vSWS~sGn-----~LaVs~ 275 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQD------GTVIIWTKDEEYEPWKKT---LLEEFPDVVWRVSWSLSGN-----ILAVSG 275 (299)
T ss_pred hhhhhhccccCCCceeeEEecCC------CcEEEEEecCccCccccc---ccccCCcceEEEEEecccc-----EEEEec
Confidence 9999999964 579999998 99999987621 111112 2233557799999999887 599999
Q ss_pred cCeeeEeee
Q 013338 428 SSGFCCTYP 436 (445)
Q Consensus 428 ~~G~v~~~~ 436 (445)
.+.+|.+|.
T Consensus 276 GdNkvtlwk 284 (299)
T KOG1332|consen 276 GDNKVTLWK 284 (299)
T ss_pred CCcEEEEEE
Confidence 999998764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=193.60 Aligned_cols=280 Identities=13% Similarity=0.160 Sum_probs=200.6
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+...-+.++|.|+|.+|.+++.||.|++|+..... .....+. .+...|.+++-.. .+|++++.+++|.+|.+...
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~-~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETID-ISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhh-ccCceeEEEeecc--cceEEeeccceEEEeeCCCC
Confidence 344557899999999999999999999999875421 2233332 2677787777654 48999999999999998843
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~ 255 (445)
.....+ ... .-++++++|+-+|++++.|+.| -.|++-++.+... ..+.+|.+
T Consensus 87 ~~~~iL-------------------------~Rf-tlp~r~~~v~g~g~~iaagsdD-~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 87 EEDTIL-------------------------ARF-TLPIRDLAVSGSGKMIAAGSDD-TAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred Ccccee-------------------------eee-eccceEEEEecCCcEEEeecCc-eeEEEEeccccchheeecccCC
Confidence 322111 111 2688999999999999999999 5999999987655 56778999
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--------CCCCCeeEEEECCCCCeEE-EEEcCCceEEEEEe
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--------STSGFVTGATWDPEGRMIL-LAFAGSLTLGSIHF 325 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--------~~~~~v~~~~~sp~~~~l~-~~~~~~~~~~~~~~ 325 (445)
+|.++.|+|++++||+.+-||.|++||+.++.+. .+. .....+..++|+|++..++ .+.+ ..+..++.
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--~~Vkvy~r 217 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--NTVKVYSR 217 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--CeEEEEcc
Confidence 9999999999999999999999999999998873 222 1134567899999965555 4433 22333332
Q ss_pred ccCCCCccccccCccccccccccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP 402 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 402 (445)
. .+.....+.. +. .+..+.|+|+|+|||+++.+ |.|.|||+++... ...
T Consensus 218 ---~----------~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~------g~I~vWnv~t~~~---------~~~ 269 (933)
T KOG1274|consen 218 ---K----------GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD------GQILVWNVDTHER---------HEF 269 (933)
T ss_pred ---C----------CceeheeecccccccceEEEEEcCCCcEEeeeccC------CcEEEEecccchh---------ccc
Confidence 1 3333333332 22 58999999999999999988 9999999997221 123
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 403 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 403 ~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
...|.+++|-|++.- +++-...|...+.+=++++.
T Consensus 270 ~~~Vc~~aw~p~~n~-----it~~~~~g~~~~~~~iv~~S 304 (933)
T KOG1274|consen 270 KRAVCCEAWKPNANA-----ITLITALGTLGVSPAIVPNS 304 (933)
T ss_pred cceeEEEecCCCCCe-----eEEEeeccccccChhhcccc
Confidence 457889999998763 44444455555444444433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=169.66 Aligned_cols=245 Identities=16% Similarity=0.247 Sum_probs=181.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
-|..+...--|++||+++.|++|+|+......+..+...+.+|.++|..++|.. -|..|++++.||.|.||.-.
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~---- 88 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE---- 88 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC----
Confidence 355666666799999999999999999976444233334469999999999954 56667777889999999976
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCC-Cc---eeeec
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQG-LG---TPIRR 252 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~-~~---~~~~~ 252 (445)
+++|........|. ..|++++|.|. |-.|++++.| |.|.|.+.+.. .. .....
T Consensus 89 -------------------~g~w~k~~e~~~h~-~SVNsV~wapheygl~LacasSD-G~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 89 -------------------NGRWTKAYEHAAHS-ASVNSVAWAPHEYGLLLACASSD-GKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred -------------------CCchhhhhhhhhhc-ccceeecccccccceEEEEeeCC-CcEEEEEEcCCCCccchhhhhc
Confidence 22455555566775 89999999985 5678889999 89999988765 22 33456
Q ss_pred CCCCeeEEEEcCC---C-----------CEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCC----CeEE
Q 013338 253 GFGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp~---g-----------~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~----~~l~ 311 (445)
|.-.|++++|.|- | +.|++|+.|..|+||+...++- ..+.+|...|+.++|.|.- .+|+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 8899999999985 4 5799999999999999988643 4578999999999999965 3455
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++.++.+.+|..... ...+ ....+..+. ..+..+.||+.|..|++++.| +.|.+|.-.
T Consensus 228 -S~SqDg~viIwt~~~e-----~e~w--k~tll~~f~--~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~ 286 (299)
T KOG1332|consen 228 -SCSQDGTVIIWTKDEE-----YEPW--KKTLLEEFP--DVVWRVSWSLSGNILAVSGGD------NKVTLWKEN 286 (299)
T ss_pred -EecCCCcEEEEEecCc-----cCcc--cccccccCC--cceEEEEEeccccEEEEecCC------cEEEEEEeC
Confidence 4455555544443211 1111 122222221 168999999999999998766 899999865
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=188.96 Aligned_cols=287 Identities=15% Similarity=0.209 Sum_probs=213.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC-CCeeEEEECcCCCcEEEEecC-CcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~ 177 (445)
..|+++.=+|-=..+|.|..+|+|.|+++. .++.+..+. |. +.|++++|..||..+++++.. |.+.+||++...
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK--~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLK--FDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcc--cCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 368999999988999999999999999995 466666664 54 899999999999998888876 999999998433
Q ss_pred Ccccccccccccccc----------------------------------------------cc-----------CCCCCc
Q 013338 178 NAASVRSGAASFLGA----------------------------------------------LS-----------RGPGTR 200 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~----------------------------------------------~~-----------~~~~~~ 200 (445)
....+...+...+.. +. .+.+..
T Consensus 279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt 358 (910)
T KOG1539|consen 279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRT 358 (910)
T ss_pred eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcc
Confidence 222221111000000 00 000000
Q ss_pred ----------------------------------------------------eE-------------EEE---------e
Q 013338 201 ----------------------------------------------------WT-------------LVD---------F 206 (445)
Q Consensus 201 ----------------------------------------------------~~-------------~~~---------~ 206 (445)
|. .|+ .
T Consensus 359 ~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 359 LRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 00 000 0
Q ss_pred eccc----CCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee----cCCCCeeEEEEcCCCCEEEEEecCCeE
Q 013338 207 LRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 207 ~~~~----~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v 278 (445)
+... ....+++++.++-|++.+.|... |.|-+|++++|-..... .|.+.|+.++....++.+++++.+|.+
T Consensus 439 L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCVSFCGNFVFIGYSK-GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred ecCccccccCcceEEEEEeccCceEEEeccC-CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 0000 12467889999999988888777 89999999998665544 688999999999889999999999999
Q ss_pred EEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEE
Q 013338 279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA 357 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 357 (445)
.+||..+.....-......+.++..+.....++++++. -.+..+++. +.+.++.+.+|+ .|++++
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~~-------------t~kvvR~f~gh~nritd~~ 583 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRVVDVV-------------TRKVVREFWGHGNRITDMT 583 (910)
T ss_pred EEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEEEEch-------------hhhhhHHhhccccceeeeE
Confidence 99999988765544566778889998888888776442 334444432 566788999999 999999
Q ss_pred eCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 358 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 358 ~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|||||++|++++.| ++|++||+.++.++.... -..+++++.|||+|.|
T Consensus 584 FS~DgrWlisasmD------~tIr~wDlpt~~lID~~~------vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 584 FSPDGRWLISASMD------STIRTWDLPTGTLIDGLL------VDSPCTSLSFSPNGDF 631 (910)
T ss_pred eCCCCcEEEEeecC------CcEEEEeccCcceeeeEe------cCCcceeeEECCCCCE
Confidence 99999999999999 999999999998874322 3567899999999998
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-22 Score=158.20 Aligned_cols=273 Identities=19% Similarity=0.191 Sum_probs=196.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCC--------C----CcceeEEecCCCCCeeEEEECcCCCcEEEEecCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------E----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~--------~----~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg 166 (445)
...|++++|+|.|.+.|+|++..+.+|.....- . ...++.....|.+.|+|.+|+|+|..+++++.|.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 356999999999999999999999998765321 0 0112223346899999999999988788888889
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC----CCCeEEEEEecCCeEEEEEc
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~g~v~vwd~ 242 (445)
+|++...+....... + .--.+.-| ++.|..++|-. .+..|++++..+..|++-|.
T Consensus 112 ~ik~l~fn~dt~~~~---g-----------------~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 112 TIKVLPFNADTCNAT---G-----------------HDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred eEEEEeccccccccc---C-----------------cceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 999877663322111 1 01124445 48999999953 45677777654346666676
Q ss_pred cCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc----C---CCCCeeEEEECCCCCeEEEE
Q 013338 243 AQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----S---TSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 243 ~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~----~---~~~~v~~~~~sp~~~~l~~~ 313 (445)
..|+.. .+.+|.+.|.++ ++-+|-.+++|+.|.+|++||++-..+.. +. . ....|.+++..|.|++|+++
T Consensus 171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 666653 456677888765 23368899999999999999999876632 21 1 23568999999999999987
Q ss_pred EcCC-ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 314 FAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 314 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..+. ...+.++ .+..++.+..|. .|.++.|||...||++++.| ..|++=|++.. +.
T Consensus 250 ~~dssc~lydir---------------g~r~iq~f~phsadir~vrfsp~a~yllt~syd------~~ikltdlqgd-la 307 (350)
T KOG0641|consen 250 HADSSCMLYDIR---------------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD------MKIKLTDLQGD-LA 307 (350)
T ss_pred cCCCceEEEEee---------------CCceeeeeCCCccceeEEEeCCCceEEEEeccc------ceEEEeecccc-hh
Confidence 5432 2333333 567788888898 89999999999999999988 99999999742 22
Q ss_pred eeeeeeeeeCCCCCCCceeEeecC
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
..-++.....|.+.+..+.|.|..
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred hcCceEEEEeccCceEEEEecCcc
Confidence 233344556788888889998863
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=169.78 Aligned_cols=288 Identities=14% Similarity=0.210 Sum_probs=197.4
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..|+.|++.|.+||+|+.+|.+.|||+.+ .. +.....+|..+|.+++||+||++|++++.|..|.+||+..+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--FR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--cc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 67999999999999999999999999965 33 2333468999999999999999999999999999999984443322
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecC-----CC
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRG-----FG 255 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~-----~~ 255 (445)
++- .++|+.+.|+|..+..+.++ .+ -.-.+-++..+....+... ..
T Consensus 103 -------------------------irf--~spv~~~q~hp~k~n~~va~~~~-~sp~vi~~s~~~h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 103 -------------------------IRF--DSPVWGAQWHPRKRNKCVATIME-ESPVVIDFSDPKHSVLPKDDDGDLNS 154 (405)
T ss_pred -------------------------EEc--cCccceeeeccccCCeEEEEEec-CCcEEEEecCCceeeccCCCcccccc
Confidence 222 37999999999544433333 33 2555666655433222211 11
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-ccCC-CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~-~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
...+..|.+.|+++++|...|.+.++|..+.++.. +... ...|.++.|+..|+.+++-+. +++++.++...-..
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTYEISDIDD 230 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEEehhhhcc
Confidence 22344688999999999999999999999988732 2222 367889999999999997633 44455443221000
Q ss_pred ccccCccccccccc---cCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC-CCCCce
Q 013338 334 AHLLPVDLPDIVSL---TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG-DNPKPV 409 (445)
Q Consensus 334 ~~~~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~v~~v 409 (445)
.. .....++...+ -....-.+++||.+|.|++.++.-. ..++||....|.++ +.+.|.. +....|
T Consensus 231 ~~-r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a-----HaLYIWE~~~GsLV-----KILhG~kgE~l~DV 299 (405)
T KOG1273|consen 231 EG-RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA-----HALYIWEKSIGSLV-----KILHGTKGEELLDV 299 (405)
T ss_pred cC-ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc-----eeEEEEecCCccee-----eeecCCchhheeec
Confidence 00 00011111111 1222457889999999999887543 78999999988776 4566644 667889
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
.|.|-.-+ ++++ .+|.|++|.....+
T Consensus 300 ~whp~rp~----i~si--~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 300 NWHPVRPI----IASI--ASGVVYIWAVVQVE 325 (405)
T ss_pred ccccceee----eeec--cCCceEEEEeeccc
Confidence 99886443 4444 78999988776543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-22 Score=180.06 Aligned_cols=258 Identities=13% Similarity=0.121 Sum_probs=176.2
Q ss_pred CeeEEEEccCCCEE-EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
.+.+++|+|+|+.+ ++++.++.+++|+.. +++....+. .+ ..+..++|+|+++.+++++ .++.+++||+....
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~--~~~~~~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~- 106 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLA--TGEVIGTLP-SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRK- 106 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECC--CCcEEEecc-CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-
Confidence 35689999999876 566788999999985 354444342 22 3357889999988776665 46999999997321
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
.+..+..+ ..+.+++|+|+++++++++.+...+.+||..+++..........+.
T Consensus 107 ------------------------~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 107 ------------------------VLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred ------------------------EEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 22222222 3467899999999999988763357788988776654333445667
Q ss_pred EEEEcCCCCEEEEE-ecCCeEEEEeCCCCCcc-cccCC-------CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 259 ILKWSPTGDYFFAA-KFDGTFYLWETNTWTSE-PWSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 259 ~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~-~~~~~-------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
+++|+|++++|+++ ..++.|++||+++++.. .+..+ ......++|+|++++++++...+..+..|++.
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--- 237 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK--- 237 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC---
Confidence 89999999988655 46899999999988752 22211 11235688999999877665444444444432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
+.+.+..+..+..+.+++|+|+|++|++++.. ++.|++||+++++.+. .++. ...++.+
T Consensus 238 ----------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~~i~v~d~~~~~~~~-----~~~~-~~~~~~~ 296 (300)
T TIGR03866 238 ----------TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-----SNDVSVIDVAALKVIK-----SIKV-GRLPWGV 296 (300)
T ss_pred ----------CCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-----CCeEEEEECCCCcEEE-----EEEc-cccccee
Confidence 22222222222368899999999999887532 1899999999877653 3433 3556888
Q ss_pred eEee
Q 013338 410 AFSF 413 (445)
Q Consensus 410 ~~sp 413 (445)
+|+|
T Consensus 297 ~~~~ 300 (300)
T TIGR03866 297 VVRP 300 (300)
T ss_pred EeCC
Confidence 8875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=166.08 Aligned_cols=241 Identities=15% Similarity=0.219 Sum_probs=181.4
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...+.|+++.|+++|..+++++.|..+++||...+..... +..++ -.+..++|.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-------------------------i~skk-yG~~~~~Ft 65 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-------------------------INSKK-YGVDLACFT 65 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------------------eeccc-ccccEEEEe
Confidence 3577899999999999999988899999999985444333 33333 678888887
Q ss_pred CCCCeEEEEEe--cCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe
Q 013338 222 PDGRYLASASY--ESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV 298 (445)
Q Consensus 222 p~~~~l~~~~~--d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v 298 (445)
.....++.++. |+ +|+..++.+.+..+. .+|...|++++.+|-+..+++++.|++|++||++..+++-+......
T Consensus 66 h~~~~~i~sStk~d~-tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~- 143 (311)
T KOG1446|consen 66 HHSNTVIHSSTKEDD-TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR- 143 (311)
T ss_pred cCCceEEEccCCCCC-ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-
Confidence 66666666665 64 999999999988664 56889999999999999999999999999999998888655433332
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---C-CCccceEEeCCCCCEEEEEEcCCCc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---G-SQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
..++|.|.|-++|++.... .+..+++... +..+..++. + +...+.+.|||||++|+.+...
T Consensus 144 pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~-----------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--- 208 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSE-LIKLYDLRSF-----------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--- 208 (311)
T ss_pred cceeECCCCcEEEEecCCC-eEEEEEeccc-----------CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---
Confidence 2478999999999876553 4555554322 122222222 1 2278999999999999998877
Q ss_pred ccceEEEEEEccCCCeeeeeeeeeeeCCCC---CCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 375 IYKGLIAIYDARRTPLISLSLIGFIRGPGD---NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.+++.|.-+|.++. .+.++.. -..+..|+||++| +..|.++|+|.+|.+-
T Consensus 209 ---s~~~~lDAf~G~~~~-----tfs~~~~~~~~~~~a~ftPds~F-----vl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 209 ---SFIYLLDAFDGTVKS-----TFSGYPNAGNLPLSATFTPDSKF-----VLSGSDDGTIHVWNLE 262 (311)
T ss_pred ---CcEEEEEccCCcEee-----eEeeccCCCCcceeEEECCCCcE-----EEEecCCCcEEEEEcC
Confidence 889999998887552 4443322 2257789999997 6778889999999873
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=189.62 Aligned_cols=225 Identities=12% Similarity=0.193 Sum_probs=152.2
Q ss_pred cCCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc-----ceeEEecCCCCCeeEEEECcCCCcEE-EEecCCcEEEE
Q 013338 99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK-----DACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~l~~spd~~~l~-~~~~dg~i~vw 171 (445)
...|.+++|+|+ +.+||+|+.|++|+||++...... .......+|...|.+++|+|++..++ +++.|+.|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 357999999997 789999999999999999642110 01112357999999999999977765 56779999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-e
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~ 250 (445)
|+..... ...+. +. ..|.+++|+|+|++|++++.| +.|++||+++++... +
T Consensus 154 Dl~tg~~-------------------------~~~i~-~~-~~V~SlswspdG~lLat~s~D-~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 154 DIENEKR-------------------------AFQIN-MP-KKLSSLKWNIKGNLLSGTCVG-KHMHIIDPRKQEIASSF 205 (568)
T ss_pred ECCCCcE-------------------------EEEEe-cC-CcEEEEEECCCCCEEEEEecC-CEEEEEECCCCcEEEEE
Confidence 9983321 11222 32 689999999999999999988 699999999987654 4
Q ss_pred ecCCCCeeE-----EEEcCCCCEEEEEecCC----eEEEEeCCC-CCcccc---cCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 251 RRGFGGLSI-----LKWSPTGDYFFAAKFDG----TFYLWETNT-WTSEPW---SSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 251 ~~~~~~v~~-----~~~sp~g~~l~~~~~dg----~v~iwd~~~-~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
..|.+.+.. ..|++++.+|++++.|+ +|+|||++. .+.... ..+.+.+......+++.++++ +.++
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls-GkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI-GKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE-EECC
Confidence 456654432 34568999999888774 799999996 333222 223333333333444666554 4555
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
+.++.|.+... ....+..+....++.+++|.|...
T Consensus 285 ~tIr~~e~~~~-----------~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 285 GNCRYYQHSLG-----------SIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CeEEEEEccCC-----------cEEeecccccCCCccceEEccccc
Confidence 66666665321 111223333222688899999643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=185.71 Aligned_cols=317 Identities=18% Similarity=0.179 Sum_probs=214.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc------------CCCcEEEEecCCcEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP------------NGGRSLSVGCKGGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp------------d~~~l~~~~~dg~i~ 169 (445)
.-++.|++...+|.+.-+|..+.|||+...+..-.+....-|...|+++.--| . ..+++++.|++|+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~-~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPR-GCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCc-cceeEecCCCcEE
Confidence 56889999999999999999999999976443333333335888888776544 2 3588899999999
Q ss_pred EEccCCCCCccccccccccccc-cccCC------------CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe
Q 013338 170 IWAPSYPGNAASVRSGAASFLG-ALSRG------------PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS 236 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~ 236 (445)
+|++....+.........+... .+... +...-.....+.+ ...+.+++.||+|++|++|..- |.
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~--r~G~R~~~vSp~gqhLAsGDr~-Gn 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS--RFGFRALAVSPDGQHLASGDRG-GN 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc--ccceEEEEECCCcceecccCcc-Cc
Confidence 9999853322221111000000 00000 0000001111222 2589999999999999999877 89
Q ss_pred EEEEEccCCCc-eeeecCCCCeeEEEEcC-C--CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCC--C
Q 013338 237 FTIWDVAQGLG-TPIRRGFGGLSILKWSP-T--GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEG--R 308 (445)
Q Consensus 237 v~vwd~~~~~~-~~~~~~~~~v~~~~~sp-~--g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~--~ 308 (445)
++||++..-+. ..+..|...|.|+.|+- + .++|++++.|.-|+|||+...-. +.+.+|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 99999987665 45667999999999984 2 56789999999999999976543 5677888889998887766 4
Q ss_pred eEEEEEcCCc-------------------------eEEEEEeccC-------CCCccccccCc-cccccccccCCC----
Q 013338 309 MILLAFAGSL-------------------------TLGSIHFASK-------PPSLDAHLLPV-DLPDIVSLTGSQ---- 351 (445)
Q Consensus 309 ~l~~~~~~~~-------------------------~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~---- 351 (445)
.+++++.+.. +++.+.+... -+..+..+++. .++..+.+++..
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 4444432211 0011110000 00000111111 344455665533
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCee
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 431 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~ 431 (445)
....+...|.|-|||+...| .++.++|..+|+++ ..+.||++.|+.+.|++|.+. ++++. .+|-
T Consensus 643 ~lIKv~lDPSgiY~atScsd------ktl~~~Df~sgEcv-----A~m~GHsE~VTG~kF~nDCkH----lISvs-gDgC 706 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSD------KTLCFVDFVSGECV-----AQMTGHSEAVTGVKFLNDCKH----LISVS-GDGC 706 (1080)
T ss_pred ceEEEEECCCccEEEEeecC------CceEEEEeccchhh-----hhhcCcchheeeeeecccchh----heeec-CCce
Confidence 57788999999999999998 89999999998876 478899999999999999875 45554 7899
Q ss_pred eEeeeee
Q 013338 432 CCTYPLI 438 (445)
Q Consensus 432 v~~~~~~ 438 (445)
|.+|.+-
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9888763
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=190.30 Aligned_cols=237 Identities=13% Similarity=0.173 Sum_probs=195.0
Q ss_pred EEEc-cCCCEEEEEECCCeEEEEEccCCCCc----ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 105 VSWH-QHKHIVAFISGSTQVIVRDYEDSEGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 105 ~~~s-p~g~~la~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
+..+ |.+++|.+|+.||.|++|++....++ ....+ ..|...|+.++...+++.+++++.|-+|++|+......
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~- 107 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT- 107 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-
Confidence 3344 45678999999999999998754442 12223 46999999999999988999999999999999883321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEE-CCCCCeEEEEEecCCeEEEEEccCCCc-----------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRYLASASYESSSFTIWDVAQGLG----------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~g~v~vwd~~~~~~----------- 247 (445)
-+..+++.|. ..|.|+++ -++..++|+||.| +.|.+||++++..
T Consensus 108 ----------------------~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD-~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 108 ----------------------FCMSTIRTHK-DYVKCLAYIAKNNELVASGGLD-RKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ----------------------hhHhhhhccc-chheeeeecccCceeEEecCCC-ccEEEEEccCcchhhhhhcccccc
Confidence 2456678886 89999999 8888999999999 5999999997732
Q ss_pred eeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 248 TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 248 ~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
..+. ++...|++++.++.|..|++|+..+.+++||.++.+. ..+.+|...|..+..+.||+.+++++ .++.+++
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s----SDgtIrl 239 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS----SDGTIRL 239 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC----CCceEEe
Confidence 1112 4567899999999999999999999999999999876 67889999999999999999999773 3566777
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
|+.. ...++.++..|. .|+++..+|+-+++++|+.| +.|+.=|+++
T Consensus 240 WdLg----------qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd------~~i~~Tdl~n 286 (735)
T KOG0308|consen 240 WDLG----------QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD------GNIYRTDLRN 286 (735)
T ss_pred eecc----------ccceeeeEEeccCceEEEeeCCCcceEEecCCC------CcEEecccCC
Confidence 7654 456788888899 89999999999999999888 8899888876
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=173.66 Aligned_cols=301 Identities=13% Similarity=0.178 Sum_probs=211.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
|.|++|.++|+.+ +|..+|.|.||+.. +.+..+... .|++.|.+|+.-.+ +.|++++.|..|..||-........
T Consensus 249 Vl~v~F~engdvi-TgDS~G~i~Iw~~~--~~~~~k~~~-aH~ggv~~L~~lr~-GtllSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 249 VLCVTFLENGDVI-TGDSGGNILIWSKG--TNRISKQVH-AHDGGVFSLCMLRD-GTLLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred EEEEEEcCCCCEE-eecCCceEEEEeCC--CceEEeEee-ecCCceEEEEEecC-ccEeecCccceEEeccccccccccc
Confidence 9999999999864 79999999999973 344444443 79999999999999 6788899999999999543332222
Q ss_pred cccccccccccccCCCCC-------ceEEE--------EeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 182 VRSGAASFLGALSRGPGT-------RWTLV--------DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
-....+.++..++.+..+ +..+. ....+|. .....++.+|+..++++++.| +.+++|+ ..+
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~q~~T~gqd-k~v~lW~--~~k 399 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG-DELWGLATHPSKNQLLTCGQD-KHVRLWN--DHK 399 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-cceeeEEcCCChhheeeccCc-ceEEEcc--CCc
Confidence 223334444444443332 11222 2234564 688999999999999999999 6999999 444
Q ss_pred ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 247 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.........++.++.|+|.| .++.|+..|...+.|.++.....+...+.+++.++|+|+|.+||++. .++.++.+++.
T Consensus 400 ~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs 477 (626)
T KOG2106|consen 400 LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVS 477 (626)
T ss_pred eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEEC
Confidence 44444556788999999999 99999999999999999977766665588999999999999999774 45667777764
Q ss_pred cCCCCccccccCccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee------ee----
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS------LS---- 394 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~------~~---- 394 (445)
. ++........+ ..|+.+.||+|+++|.+-+-| -.|..|....-+... ..
T Consensus 478 ~------------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d------~eiLyW~~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 478 A------------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD------YEILYWKPSECKQITSVKDVKWATYTC 539 (626)
T ss_pred C------------CCcEEEEeeeecCceeEEeeecCCCceEEeccCc------eEEEEEccccCcccceecceeeeeeEE
Confidence 3 22222222222 389999999999999998777 779999433211110 00
Q ss_pred eeee---eeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 395 LIGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 395 ~~~~---~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.++. ...++..|+.++-|.+. .++++|-+.|+|.+|.
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~~~-----~~lA~gdd~g~v~lf~ 579 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSHCE-----KLLASGDDFGKVHLFS 579 (626)
T ss_pred EEEEEEecccCCchHHHhhhhhhh-----hhhhccccCceEEEEc
Confidence 0000 01234445555555444 4688999999998764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-24 Score=194.89 Aligned_cols=234 Identities=19% Similarity=0.310 Sum_probs=175.1
Q ss_pred CeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcE-EEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l-~~~~~dg~i~vw~~~~~~~ 178 (445)
.+..+.|+. +.++||+++..|.|.+||+.......+...+..|...++++.|++....+ ++++.||.|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466788874 46899999999999999997533333334456899999999999866554 5566789999999995554
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCc--eeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG--TPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~ 255 (445)
.... ++. ...|..++|+|. +..++++ .|+|.+++||++.... .++..|.+
T Consensus 169 ~~t~-------------------------~~n-SESiRDV~fsp~~~~~F~s~-~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 169 KSTF-------------------------RSN-SESIRDVKFSPGYGNKFASI-HDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred cccc-------------------------ccc-chhhhceeeccCCCceEEEe-cCCceEEEeeccCchhHHHHhhcccC
Confidence 4332 233 378999999995 4455555 5559999999997654 56778999
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
.|.++.|+|++.+||+|+.|++|+|||+.+.+... ......++.+++|-|..++.++.++. ..+..+++|+...
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm-v~dtsV~VWDvrR--- 297 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM-VVDTSVHVWDVRR--- 297 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc-cccceEEEEeecc---
Confidence 99999999999999999999999999999876633 33556789999999998876644332 3345556665432
Q ss_pred ccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcC
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKG 371 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d 371 (445)
..-+..++..|. .++.++|.. |-..|.+++.|
T Consensus 298 ------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 298 ------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ------ccccceeeeccCccccceeccCCCceeeEeecCc
Confidence 334456777888 789999965 44567788777
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=162.61 Aligned_cols=268 Identities=15% Similarity=0.137 Sum_probs=194.8
Q ss_pred EEEEECCCeEEEEEccCCC----Cccee----E-EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccc
Q 013338 114 VAFISGSTQVIVRDYEDSE----GKDAC----I-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS 184 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~----~~~~~----~-~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 184 (445)
|++|++...|.=+++.... ..... . ....|.+.+++++.+ +.++++++.|.+|+|||+....+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~--- 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGI--- 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcc---
Confidence 5667777776666654322 11111 1 123799999999997 46888889999999999984443332
Q ss_pred ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC--eEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEE
Q 013338 185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILK 261 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~ 261 (445)
+-.| .+.|+++.|.+.-. +|++|+.| |.|.+|+...-.. ..+..|.+.|+.++
T Consensus 79 ----------------------ll~H-agsitaL~F~~~~S~shLlS~sdD-G~i~iw~~~~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 79 ----------------------LLSH-AGSITALKFYPPLSKSHLLSGSDD-GHIIIWRVGSWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred ----------------------eecc-ccceEEEEecCCcchhheeeecCC-CcEEEEEcCCeEEeeeecccccccceeE
Confidence 3445 48999999998765 89999999 8999999987765 44667888999999
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
.+|.|++.++.+.|+.++.||+-+++...........+.+.|+|.|.+++.... ..+..+.+. ..
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~--~~i~i~q~d-------------~A 199 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR--NKIDIYQLD-------------NA 199 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec--cEEEEEecc-------------cH
Confidence 999999999999999999999999887555545555566999999998887654 233344332 12
Q ss_pred cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCC
Q 013338 342 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~ 421 (445)
.....+.....+.++.|- ++..|++|..+ +.|.+||.+.... ...+.+|...|.++.+--+. .+.
T Consensus 200 ~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ds~~~-----~~~~~AH~~RVK~i~~~~~~---~~~ 264 (362)
T KOG0294|consen 200 SVFREIENPKRILCATFL-DGSELLVGGDN------EWISLKDTDSDTP-----LTEFLAHENRVKDIASYTNP---EHE 264 (362)
T ss_pred hHhhhhhccccceeeeec-CCceEEEecCC------ceEEEeccCCCcc-----ceeeecchhheeeeEEEecC---Cce
Confidence 222223222345666664 56778888777 8999999997433 45788999999999854321 123
Q ss_pred eEEEEecCeeeEeeeeeee
Q 013338 422 LLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 422 ~l~~~~~~G~v~~~~~~~~ 440 (445)
+|.-..++|.|.+|++...
T Consensus 265 ~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEEeccCceEEEEEcccc
Confidence 5777779999999999876
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=179.29 Aligned_cols=304 Identities=15% Similarity=0.236 Sum_probs=214.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|++++..|.|.+||+|+.||+++||.+. +|.++.... ..+.|.+++|+|.+.. +++++....+.|-+...+..
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~--TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDGTVRIWEIA--TGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred CeEEEEEecCCcceeeecCCCCcEEEEEee--cceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 349999999999999999999999999995 588887775 5778999999998654 55666665566666553322
Q ss_pred ccc------cccc--ccccccc-ccCCCCC---ceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--CeEEEEEccC
Q 013338 179 AAS------VRSG--AASFLGA-LSRGPGT---RWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQ 244 (445)
Q Consensus 179 ~~~------~~~~--~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~ 244 (445)
... +... ...++.+ ..|.... ...-++..-.| ...|..+.|+..|.+|++...++ ..|.|+++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 111 0000 0001111 1111110 00012222334 37999999999999999987653 2789999987
Q ss_pred CCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
...+ .+....+.|.++.|+|...+|++++ ...|+|||+..+.+ +.+......|..++.+|.|..|++++. +..+.-
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~-d~k~~W 633 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSY-DKKMCW 633 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC-CCeeEE
Confidence 6554 4446678999999999999999887 56799999998776 566677788999999999999887633 233322
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc------CCCeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR------RTPLISLSL 395 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~------~~~~~~~~~ 395 (445)
+++ +...++.+++..|. .+++++|++.-.++++|+.| |++.||.-. .+.+ ..|
T Consensus 634 fDl------------dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD------gtv~Vfhg~VY~Dl~qnpl--iVP 693 (733)
T KOG0650|consen 634 FDL------------DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD------GTVIVFHGMVYNDLLQNPL--IVP 693 (733)
T ss_pred EEc------------ccCcchhHHhhhhhhhhhhhhhccccceeeeecCC------CcEEEEeeeeehhhhcCCc--eEe
Confidence 222 12556778888888 89999999999999999988 888887532 2222 457
Q ss_pred eeeeeCCCCC----CCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 396 IGFIRGPGDN----PKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 396 ~~~~~~~~~~----v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++.+++|... |.++.|+|..-+ |-.+--+|.|.+|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpW-----LfsAGAd~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPW-----LFSAGADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCce-----EEecCCCceEEee
Confidence 7888898765 888899998654 3333357788766
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=179.90 Aligned_cols=231 Identities=15% Similarity=0.175 Sum_probs=181.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+++.|.++++.+++++.|+.+++|+++. .+...++ .+|.+.|+++.|......+++++.|.+|++||+......
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 3699999999999999999999999999953 5555555 579999999999888666888888999999999843222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
..+.. ...+..++.+ ...++++..| +.|++||.++..........+.|++
T Consensus 297 kt~l~---------------------------~S~cnDI~~~--~~~~~SgH~D-kkvRfwD~Rs~~~~~sv~~gg~vtS 346 (459)
T KOG0288|consen 297 KTVLP---------------------------GSQCNDIVCS--ISDVISGHFD-KKVRFWDIRSADKTRSVPLGGRVTS 346 (459)
T ss_pred ccccc---------------------------cccccceEec--ceeeeecccc-cceEEEeccCCceeeEeecCcceee
Confidence 22221 1455666665 4568888888 6999999999988888887889999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
+..+++|..|.+++.|.++.+.|+++.+... +. ......+.+.|||++.|+++|+ .++.+++|.+.
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~-------- 417 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVF-------- 417 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEcc--------
Confidence 9999999999999999999999999988733 22 2233478899999999999763 33455555543
Q ss_pred cccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 335 HLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+++....+.... .|++++|+|.|..|++++.+ ..+.+|
T Consensus 418 -----tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~------~~v~lW 458 (459)
T KOG0288|consen 418 -----TGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ------KAVTLW 458 (459)
T ss_pred -----CceEEEEeccCCCCcceEEEEEcCCCchhhcccCC------cceEec
Confidence 333333343322 69999999999999999887 889998
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=189.57 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=189.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+++++..-+..|++|+.|.++++||. .+|.+...+ .+|...|.++...+. .++.++.|.+|++|++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~--~sg~C~~~l-~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~----- 319 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDC--STGECTHSL-QGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVT----- 319 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEec--CCCcEEEEe-cCCCceEEEEEccCc--eEeeccCCceEEEEecc-----
Confidence 46999999988899999999999999997 468888877 589999999988765 66677889999999998
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.+ .++..+.+|. +.|.++..+ +.++++|+.| |+|++||+.++++.. +.+|...|.
T Consensus 320 ----n~----------------~~l~l~~~h~-~~V~~v~~~--~~~lvsgs~d-~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 320 ----NG----------------ACLNLLRGHT-GPVNCVQLD--EPLLVSGSYD-GTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred ----Cc----------------ceEEEecccc-ccEEEEEec--CCEEEEEecC-ceEEEEEhhhceeeeeecCCcceEE
Confidence 22 3677788875 899999997 7899999999 699999999988854 667899999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCC-Cc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
++.+.+. ..+++|+.|++|++||+++. ++ ..+..|...+..+.+ .+++|+++. .++.+++|+..
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~----aD~~Ik~WD~~------- 441 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS----ADGTIKLWDAE------- 441 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc----ccccEEEeecc-------
Confidence 9988655 89999999999999999999 66 667788887866554 467777552 34466666543
Q ss_pred cCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 337 LPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 337 ~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.++++.+.+ |. .|+.+++. ...+++++.+ +.+++||+++++..
T Consensus 442 ---~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~------~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 442 ---EGECLRTLEGRHVGGVSALALG--KEEILCSSDD------GSVKLWDLRSGTLI 487 (537)
T ss_pred ---cCceeeeeccCCcccEEEeecC--cceEEEEecC------CeeEEEecccCchh
Confidence 5667777777 54 78888876 4566677777 99999999998776
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=175.55 Aligned_cols=231 Identities=13% Similarity=0.209 Sum_probs=178.8
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+...+.+++.|+||++||+|+.|..|.||+.++ .+.+..+ .+|.+.|.+++|-.....+++++.|..|++|+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-- 274 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--LEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-- 274 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcc--cchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehh--
Confidence 3445799999999999999999999999999964 5555554 5899999999998887899999999999999998
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
+...+.++.+|+ ..|.++.-..-++.+.+|+.| .++++|++.......+.++.+.
T Consensus 275 -----------------------~~s~vetlyGHq-d~v~~IdaL~reR~vtVGgrD-rT~rlwKi~eesqlifrg~~~s 329 (479)
T KOG0299|consen 275 -----------------------QLSYVETLYGHQ-DGVLGIDALSRERCVTVGGRD-RTVRLWKIPEESQLIFRGGEGS 329 (479)
T ss_pred -----------------------HhHHHHHHhCCc-cceeeechhcccceEEecccc-ceeEEEeccccceeeeeCCCCC
Confidence 223455678886 899999888778878888899 5999999977766777788889
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-------------cCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-------------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-------------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
+.|++|- +...+++|+.+|.|.+|++.+.+..-. ..++.+|++++..|...+++++ +.+ +.+
T Consensus 330 idcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-S~~---G~v 404 (479)
T KOG0299|consen 330 IDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-SWS---GCV 404 (479)
T ss_pred eeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec-CCC---Cce
Confidence 9999997 556799999999999999988765211 0123489999999998888866 333 444
Q ss_pred EeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEE
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 368 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 368 (445)
++|....... ....+..+.-...|++++|+++|++|++|
T Consensus 405 rLW~i~~g~r------~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 405 RLWKIEDGLR------AINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEEEecCCcc------ccceeeecccccEEEEEEEccCCCEEEEe
Confidence 4444322111 12334444434479999999999977766
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-22 Score=179.82 Aligned_cols=294 Identities=14% Similarity=0.229 Sum_probs=213.5
Q ss_pred cCCeeEEEEccCC---CEEEEEECCCeEEEEEccCCCCc----------------------cee------EEecCCCCCe
Q 013338 99 EVDLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGK----------------------DAC------ILTSDSQRDV 147 (445)
Q Consensus 99 ~~~v~~~~~sp~g---~~la~~~~d~~i~iw~~~~~~~~----------------------~~~------~~~~~~~~~v 147 (445)
+..|++++|...+ -+||++|.|..||||.+...+.. .+. .+..+|.+.|
T Consensus 191 ~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV 270 (764)
T KOG1063|consen 191 TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV 270 (764)
T ss_pred chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence 3468888888654 48899999999999988543200 001 1234899999
Q ss_pred eEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEE---eecccCCCceeEEEECCCC
Q 013338 148 KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD---FLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 148 ~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~ 224 (445)
+++.|+|.+..|++++.|.++.+|...... +-|...- .+.+. ........|+|++
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~t---------------------GiWv~~vRlGe~gg~-a~GF~g~lw~~n~ 328 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENT---------------------GIWVDVVRLGEVGGS-AGGFWGGLWSPNS 328 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCcc---------------------ceEEEEEEeeccccc-ccceeeEEEcCCC
Confidence 999999998899999999999999876221 1233222 22222 3678999999999
Q ss_pred CeEEEEEecCCeEEEEEccCCC-c---eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC----------------
Q 013338 225 RYLASASYESSSFTIWDVAQGL-G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN---------------- 284 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~-~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~---------------- 284 (445)
..+++-+.. |..++|...... . ..+.+|...|.+++|+|.|.+|++.+.|.+-|+|-.-
T Consensus 329 ~~ii~~g~~-Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG 407 (764)
T KOG1063|consen 329 NVIIAHGRT-GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG 407 (764)
T ss_pred CEEEEeccc-CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc
Confidence 999988888 899999943321 1 2344688999999999999999999888655554211
Q ss_pred -------------------------------------------------------------------------CCC----
Q 013338 285 -------------------------------------------------------------------------TWT---- 287 (445)
Q Consensus 285 -------------------------------------------------------------------------~~~---- 287 (445)
++.
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 000
Q ss_pred ------------------------------cccccCCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccc
Q 013338 288 ------------------------------SEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 288 ------------------------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 336 (445)
..++.+|...|.+++.+|+++++|+++... ..-..+.+|+..
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~------- 560 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA------- 560 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-------
Confidence 011225666788889999999999876433 334566666543
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
+...+..+.+|. .|+.++|||||++|+++|.| .++.+|........... ....+.|..-|+++.|+|++
T Consensus 561 ---~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD------Rt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 561 ---NWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD------RTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred ---chhhhheecccceEEEEEEECCCCcEEEEeecC------ceEEeeeeecccchhhh-hccccccceEEEEcccCccc
Confidence 556677899999 99999999999999999999 99999998654433222 33467899899999999999
Q ss_pred CCCCCCeEEEEecCeeeEeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++ ++-+..|-+|.+|..
T Consensus 631 ~~-----FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 631 KY-----FATASRDKKVKVWEE 647 (764)
T ss_pred ce-----eEEecCCceEEEEec
Confidence 86 555556667776654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-22 Score=171.57 Aligned_cols=259 Identities=14% Similarity=0.233 Sum_probs=190.1
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..|.+.|+.+...|+...++++... +.+.|||........... + ....--.+.+|+ +.-.+++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~--------------~~~Pdl~L~gH~-~eg~gls 184 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-G--------------ECRPDLRLKGHE-KEGYGLS 184 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-c--------------cCCCceEEEeec-ccccccc
Confidence 4699999999999998888887765 899999987332221111 0 111223477886 4577899
Q ss_pred ECCC-CCeEEEEEecCCeEEEEEccCCCc--------eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCC--C
Q 013338 220 WGPD-GRYLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTW--T 287 (445)
Q Consensus 220 ~sp~-~~~l~~~~~d~g~v~vwd~~~~~~--------~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~--~ 287 (445)
|++. .-.|++++.| ++|++||++.... ..+..|...|..++|++- ...|++++.|+.+.|||++++ +
T Consensus 185 Wn~~~~g~Lls~~~d-~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDD-HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred cccccceeEeeccCC-CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 9984 3467788888 6999999985432 334568899999999985 567789999999999999963 3
Q ss_pred c-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CE
Q 013338 288 S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ER 364 (445)
Q Consensus 288 ~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~ 364 (445)
. .....|.+.+++++|+|-+.+|+++++.+.++..|++.+. ..++.++.+|. .|.++.|||+. ..
T Consensus 264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------NKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc------------ccCceeccCCCcceEEEEeCCCCCce
Confidence 3 4566899999999999998888877776666666666543 23677888999 89999999976 56
Q ss_pred EEEEEcCCCcccceEEEEEEccC-CCee--------eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARR-TPLI--------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~-~~~~--------~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
||+++.| +.+.|||+.. ++.. ...++-.-.||...|..+.|.|+..+ +++-.-+++-+++|
T Consensus 332 LASSg~D------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW----~I~SvaeDN~LqIW 401 (422)
T KOG0264|consen 332 LASSGTD------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW----TIASVAEDNILQIW 401 (422)
T ss_pred eEecccC------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe----EEEEecCCceEEEe
Confidence 7777666 9999999963 1111 01122234489999999999999766 45555578888887
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
...
T Consensus 402 ~~s 404 (422)
T KOG0264|consen 402 QMA 404 (422)
T ss_pred ecc
Confidence 653
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=160.36 Aligned_cols=288 Identities=16% Similarity=0.256 Sum_probs=204.2
Q ss_pred CCeeEEEEcc--C-CCEEEEEE----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC----cEEEEecCCcE
Q 013338 100 VDLQGVSWHQ--H-KHIVAFIS----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGI 168 (445)
Q Consensus 100 ~~v~~~~~sp--~-g~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~----~l~~~~~dg~i 168 (445)
..+.++.||. + +.+||.|+ ..+.|.|..++..+++........|.-+++.+.|.|+.. .+++++. ..+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~L 123 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-DFL 123 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-CeE
Confidence 3578889983 3 45788887 567788888876667666665568999999999999853 3555554 479
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC-
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL- 246 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~- 246 (445)
++|.+............ +......+...+++++.|+. +-++|.+++-| .+..|||+.++.
T Consensus 124 RlWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiD-TTCTiWdie~~~~ 185 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID-TTCTIWDIETGVS 185 (364)
T ss_pred EEEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeeccc-CeEEEEEEeeccc
Confidence 99999843222111110 11111223347899999987 77889999999 599999999873
Q ss_pred ---ceeeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCccccc---CC-CCCeeEEEECCCCC-eEEEEEcCC
Q 013338 247 ---GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS---ST-SGFVTGATWDPEGR-MILLAFAGS 317 (445)
Q Consensus 247 ---~~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~---~~-~~~v~~~~~sp~~~-~l~~~~~~~ 317 (445)
..++..|...|.+++|...+. .|++.+.||.|++||++..+-.++. .. ..+...++|++... ++|+-..+.
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 356788999999999998654 6789999999999999987764332 22 45678899998664 555444444
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCe-eeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLS 394 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~-~~~~ 394 (445)
..+-++++.. ...++.++.+|. .|+.++|.|.. ..|++++.| ..+.+||+..... ....
T Consensus 266 ~~V~iLDiR~------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD------~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 266 NKVVILDIRV------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD------CQALIWDLQQMPRENGED 327 (364)
T ss_pred ceEEEEEecC------------CCcceehhhcCcccccceEecCCCCceeeecCCc------ceEEEEecccccccCCCC
Confidence 5555555532 566788999999 89999999965 678887766 9999999985332 1122
Q ss_pred eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecC
Q 013338 395 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 429 (445)
Q Consensus 395 ~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~ 429 (445)
|+-.+. .++.|+.+.|+|. ..-+++|++.+
T Consensus 328 Pilay~-a~~EVNqi~Ws~~----~~Dwiai~~~k 357 (364)
T KOG0290|consen 328 PILAYT-AGGEVNQIQWSSS----QPDWIAICFGK 357 (364)
T ss_pred chhhhh-ccceeeeeeeccc----CCCEEEEEecC
Confidence 332233 4567999999975 34578998754
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.1e-21 Score=157.38 Aligned_cols=262 Identities=15% Similarity=0.266 Sum_probs=188.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE-ecCCCCCeeEEEEC-cC-CCcEEEEecCCcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-TSDSQRDVKVLEWR-PN-GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~l~~s-pd-~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
-|+++.|.+.|+++|+|+.|++++|||.+..++...++. .+.|.+.|..+.|. |. |+.+++++.|+++.||.-....
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 389999999999999999999999999876666655442 34799999999994 44 4556667789999999864111
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCC------cee
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGL------GTP 249 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~------~~~ 249 (445)
. .....+|....++.... ..|+.+.|.| -|-.+++++.| |.++||+.-... .+.
T Consensus 95 ~----------------~~~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aD-G~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 95 E----------------EAHGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASAD-GILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred c----------------ccccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccC-cEEEEEecCCccccccchhhh
Confidence 1 11234788888888775 8999999999 57778999999 899999865421 111
Q ss_pred --------eecCCCCeeEEEEcCC---CCEEEEEecC-----CeEEEEeCCCCC--c---ccccCCCCCeeEEEECCCC-
Q 013338 250 --------IRRGFGGLSILKWSPT---GDYFFAAKFD-----GTFYLWETNTWT--S---EPWSSTSGFVTGATWDPEG- 307 (445)
Q Consensus 250 --------~~~~~~~v~~~~~sp~---g~~l~~~~~d-----g~v~iwd~~~~~--~---~~~~~~~~~v~~~~~sp~~- 307 (445)
.-.+.....|+.|+|. ..+|++|+.+ +.++||...... . ..+..|..+|+.++|.|+-
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 1124567889999974 5578888765 478888765543 2 4566899999999999963
Q ss_pred ---CeEEEEEcCCceEEEEEeccCCCCc-------cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 308 ---RMILLAFAGSLTLGSIHFASKPPSL-------DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 308 ---~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
..||+++.+ + ++++++....... ......+..+.+..+.+|. .|..+.|+-.|..|++.+.|
T Consensus 237 r~y~~lAvA~kD-g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD----- 309 (361)
T KOG2445|consen 237 RSYHLLAVATKD-G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD----- 309 (361)
T ss_pred CceeeEEEeecC-c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC-----
Confidence 345555433 3 5555554321111 1111223445567788899 89999999999999988777
Q ss_pred ceEEEEEEccCC
Q 013338 377 KGLIAIYDARRT 388 (445)
Q Consensus 377 d~~i~vwd~~~~ 388 (445)
|+|++|...-.
T Consensus 310 -G~VRLWkany~ 320 (361)
T KOG2445|consen 310 -GCVRLWKANYN 320 (361)
T ss_pred -ceeeehhhhhh
Confidence 99999987643
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-22 Score=182.55 Aligned_cols=269 Identities=13% Similarity=0.211 Sum_probs=193.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC----CCCCeeEEEECcCC-CcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD----SQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~ 174 (445)
....+|+.+++-..|+.++. ..++|+.++.......+....+ ..-.+..+.|+.-. +.|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 35678888898888887654 4577887764433333333211 11235677887533 455666677999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceee-ec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI-RR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~ 252 (445)
..... .++..+..|. ..++++.|++ ...+|++|+.| |+|++||++....... ..
T Consensus 119 k~~rn----------------------k~l~~f~EH~-Rs~~~ldfh~tep~iliSGSQD-g~vK~~DlR~~~S~~t~~~ 174 (839)
T KOG0269|consen 119 KSIRN----------------------KLLTVFNEHE-RSANKLDFHSTEPNILISGSQD-GTVKCWDLRSKKSKSTFRS 174 (839)
T ss_pred ccccc----------------------hhhhHhhhhc-cceeeeeeccCCccEEEecCCC-ceEEEEeeecccccccccc
Confidence 43221 1233356675 8999999998 56788999999 7999999998776544 44
Q ss_pred CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
....|.+|+|+|. +.+|+++...|.+++||++.... .++..|.++|.++.|+|++.+||+|+ +++.+++|+..
T Consensus 175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG----RDK~vkiWd~t 250 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG----RDKMVKIWDMT 250 (839)
T ss_pred cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC----CCccEEEEecc
Confidence 5678999999995 78899999999999999998775 67889999999999999999999874 34555555432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCE-EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCc
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
.. ......++..-.+|..+.|-|..++ ||+++.-.+ ..|+|||++. ...|...+..|...++.
T Consensus 251 ~~--------~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d----tsV~VWDvrR----PYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 251 DS--------RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD----TSVHVWDVRR----PYIPYATFLEHTDSVTG 314 (839)
T ss_pred CC--------CccceeEEeecceeeeeeeccCccchhhhhhcccc----ceEEEEeecc----ccccceeeeccCccccc
Confidence 10 1222333333337999999998765 666665432 8999999987 34556788889999999
Q ss_pred eeEee
Q 013338 409 VAFSF 413 (445)
Q Consensus 409 v~~sp 413 (445)
++|..
T Consensus 315 i~W~~ 319 (839)
T KOG0269|consen 315 IAWDS 319 (839)
T ss_pred eeccC
Confidence 99965
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=197.20 Aligned_cols=295 Identities=16% Similarity=0.226 Sum_probs=213.3
Q ss_pred eEEEEccCCC-EEEEEE----------CCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCc---EEEEe-cC
Q 013338 103 QGVSWHQHKH-IVAFIS----------GSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGR---SLSVG-CK 165 (445)
Q Consensus 103 ~~~~~sp~g~-~la~~~----------~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~---l~~~~-~d 165 (445)
..++|+|++. ++|+|. .+.++.||.++..+... ...-........+.|+|.+.|.. ++++| .|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3579999986 566543 35567778776544431 11111234567899999988777 45555 57
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~ 244 (445)
|.|.+||...-... ....++.....|+ +.|..+.|++... +||+|+.+ |.|.|||++.
T Consensus 90 G~I~ly~p~~~~~~-------------------~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~-geI~iWDlnn 148 (1049)
T KOG0307|consen 90 GNIVLYDPASIIAN-------------------ASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADD-GEILIWDLNK 148 (1049)
T ss_pred CceEEecchhhccC-------------------cchHHHhhhcccC-CceeeeeccccCCceeeccCCC-CcEEEeccCC
Confidence 99999998732000 0112344466776 8999999999554 88888888 8999999987
Q ss_pred CCceeee---cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCC--CCeeEEEECCCCCeEEEEEcCC
Q 013338 245 GLGTPIR---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 245 ~~~~~~~---~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~--~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
-+..... .....|.+++|+.. ...|++++.+|.+.|||++..+. ..+..+. ..+..++|+|+...-+....++
T Consensus 149 ~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d 228 (1049)
T KOG0307|consen 149 PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD 228 (1049)
T ss_pred cCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence 5432222 23578999999875 56788999999999999999865 3444333 4578999999986544444455
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
...-++.+|+.+. ...+++++.+|. +|.++.|++.+ ++|++++.| +.|.+|+.++++.+.
T Consensus 229 d~~PviqlWDlR~---------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD------~~ii~wN~~tgEvl~--- 290 (1049)
T KOG0307|consen 229 DSAPVIQLWDLRF---------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD------NRIICWNPNTGEVLG--- 290 (1049)
T ss_pred CCCceeEeecccc---------cCCchhhhcccccceeeeccCCCCchhhhcccCC------CCeeEecCCCceEee---
Confidence 5667777776532 456678889999 99999999977 888888888 999999999988773
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
.+...+..+..+.|+|.. ..++++.+=+|+|.+|++.-..+
T Consensus 291 --~~p~~~nW~fdv~w~pr~----P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 291 --ELPAQGNWCFDVQWCPRN----PSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred --ecCCCCcceeeeeecCCC----cchhhhheeccceeeeeeecCCc
Confidence 555567889999999863 34688888899999999875543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=172.68 Aligned_cols=244 Identities=14% Similarity=0.172 Sum_probs=187.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.|++-+|+|.+|+.|+..+.+++|.+. +|..+..+ ..|...|+++.|+-||..+++++.||.|.+|.+..--.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEec--cccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc
Confidence 4569999999999999988899999999994 58777766 67999999999999999999999999999999862111
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
.. .+......+.+..|. -+|+++...+. ..+|++++.|. ++++||+..+...........
T Consensus 158 a~----------------~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~g~LLlti~fp~s 219 (476)
T KOG0646|consen 158 AD----------------NDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDR-TIKLWDLSLGVLLLTITFPSS 219 (476)
T ss_pred cc----------------cCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCc-eEEEEEeccceeeEEEecCCc
Confidence 00 011223566778886 89999988764 46799999995 999999999988877788899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+.+++.+|-++.+.+|+.+|.|.+.++.+... ....+..=.+++.+..
T Consensus 220 i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~-----~~~~v~~k~~~~~~t~--------------------------- 267 (476)
T KOG0646|consen 220 IKAVALDPAERVVYIGTEEGKIFQNLLFKLSG-----QSAGVNQKGRHEENTQ--------------------------- 267 (476)
T ss_pred ceeEEEcccccEEEecCCcceEEeeehhcCCc-----ccccccccccccccce---------------------------
Confidence 99999999999999999999999988765332 1222222222333222
Q ss_pred cCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 337 LPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
+..+.+|. .|++++++-||..|++|+.| |.++|||+.+.+++ +++....++|+.+.+.|
T Consensus 268 -------~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d------g~VcvWdi~S~Q~i-----Rtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 268 -------INVLVGHENESAITCLAISTDGTLLLSGDED------GKVCVWDIYSKQCI-----RTLQTSKGPVTNLQINP 329 (476)
T ss_pred -------eeeeccccCCcceeEEEEecCccEEEeeCCC------CCEEEEecchHHHH-----HHHhhhccccceeEeec
Confidence 22233333 59999999999999999988 99999999986655 23332456777777744
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=172.64 Aligned_cols=242 Identities=13% Similarity=0.186 Sum_probs=178.8
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCC-CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+|.++.|.|+|. .+++++....+..||+....-..+... .++ ...+.....+|+++.++..|..|.|.+....++..
T Consensus 259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred ccceeeecCCCceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 689999999998 888999999999999975433222222 223 34577888899999899999999999988764332
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL- 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v- 257 (445)
.. .++- .+.|..+.|+.|++.|++++.+ |.|.+||++...+.......+.|
T Consensus 338 i~-------------------------s~Ki--eG~v~~~~fsSdsk~l~~~~~~-GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 338 IT-------------------------SFKI--EGVVSDFTFSSDSKELLASGGT-GEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred hh-------------------------eeee--ccEEeeEEEecCCcEEEEEcCC-ceEEEEecCCcceEEEEeecCccc
Confidence 22 2222 3789999999999999999989 79999999999877666555555
Q ss_pred -eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------ccccCCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccC
Q 013338 258 -SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASK 328 (445)
Q Consensus 258 -~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~ 328 (445)
++++.++++.+||+|+..|.|.|||..+.-. ..+......|+++.|++|.+.|+.++.. ....+.+++-..
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 5677889999999999999999999765321 2344566789999999999999976542 234555555322
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
. -.. +++...+--+ .|++++|||.|.+||.|..+ |.+.+|.+.
T Consensus 470 T---VFs----NfP~~n~~vg--~vtc~aFSP~sG~lAvGNe~------grv~l~kL~ 512 (514)
T KOG2055|consen 470 T---VFS----NFPTSNTKVG--HVTCMAFSPNSGYLAVGNEA------GRVHLFKLH 512 (514)
T ss_pred e---eec----cCCCCCCccc--ceEEEEecCCCceEEeecCC------CceeeEeec
Confidence 1 111 1111111111 59999999999999999887 999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=158.02 Aligned_cols=245 Identities=16% Similarity=0.233 Sum_probs=174.2
Q ss_pred cCCCCCeeEEEECcCCCcEE-EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..-.+.|.+|+|||....++ +++.|++||+|+++..+.... +....| .++|.+++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------ka~~~~-~~PvL~v~ 79 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------KAQQSH-DGPVLDVC 79 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----------------------hhhhcc-CCCeEEEE
Confidence 44567899999999545555 677799999999984322211 113334 48999999
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCC--EEEEEecCCeEEEEeCCCCCcccccCCCCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD--YFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 297 (445)
|+.||..+++++.| +.+++||+.+++...+..|.+.|..+.|-+... .|++|+.|++|+.||++.............
T Consensus 80 WsddgskVf~g~~D-k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR 158 (347)
T KOG0647|consen 80 WSDDGSKVFSGGCD-KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER 158 (347)
T ss_pred EccCCceEEeeccC-CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce
Confidence 99999999999999 699999999999999999999999999987655 789999999999999998776544455566
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEcCCCcc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDI 375 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~d~~d~ 375 (445)
+.++..- ...++++..+ ..+..+.+.+.. .+.+..... . -+.+++..+|....|.|+-.
T Consensus 159 vYa~Dv~--~pm~vVata~-r~i~vynL~n~~------------te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE---- 219 (347)
T KOG0647|consen 159 VYAADVL--YPMAVVATAE-RHIAVYNLENPP------------TEFKRIESPLKWQTRCVACFQDKDGFALGSIE---- 219 (347)
T ss_pred eeehhcc--CceeEEEecC-CcEEEEEcCCCc------------chhhhhcCcccceeeEEEEEecCCceEeeeec----
Confidence 6665543 3345544433 335555554321 111111111 1 47889988888888889888
Q ss_pred cceEEEEEEccCCCeeeeeeeeeeeCC---------CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 376 YKGLIAIYDARRTPLISLSLIGFIRGP---------GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|.+.+..++.+...... .++-| -..|++++|+|. .|.+.++| +||+++||+=..
T Consensus 220 --Grv~iq~id~~~~~~nF---tFkCHR~~~~~~~~VYaVNsi~FhP~----hgtlvTaG-sDGtf~FWDkda 282 (347)
T KOG0647|consen 220 --GRVAIQYIDDPNPKDNF---TFKCHRSTNSVNDDVYAVNSIAFHPV----HGTLVTAG-SDGTFSFWDKDA 282 (347)
T ss_pred --ceEEEEecCCCCccCce---eEEEeccCCCCCCceEEecceEeecc----cceEEEec-CCceEEEecchh
Confidence 89999998875221111 12222 235889999994 45566666 899999997543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=165.77 Aligned_cols=302 Identities=18% Similarity=0.263 Sum_probs=203.9
Q ss_pred cCCeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcc----e--eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKD----A--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~----~--~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw 171 (445)
..+|.++.|.++.. .||+|+.|..|+||-++...... + ......|...|+.+.|+|+|..|++++.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999876 99999999999999886532211 1 11234799999999999998777777777999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI- 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~- 250 (445)
..... .+. ....-+.-....|...+.+++|. ..|..++|+|++.++++++.|+ .+++||+..|.....
T Consensus 93 k~~~~-~~~--------~~d~e~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dn-s~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 93 KQGDV-RIF--------DADTEADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDN-SVRLWDVHAGQLLAIL 161 (434)
T ss_pred EecCc-CCc--------cccchhhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccc-eEEEEEeccceeEeec
Confidence 87621 000 00001111234589999999986 8999999999999999999995 999999999988654
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------cc--------------CC----CCCeeEEEECCC
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--------------ST----SGFVTGATWDPE 306 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------~~--------------~~----~~~v~~~~~sp~ 306 (445)
..|...+..++|.|-++++++-+.|...+.+.+...+... +. -| ..-...++|+|+
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 4678999999999999999999989877777665433210 00 01 112356799999
Q ss_pred CCeEEEEEc-----CCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeC------------------CCC
Q 013338 307 GRMILLAFA-----GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD------------------ASG 362 (445)
Q Consensus 307 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s------------------p~g 362 (445)
|.++++... +....+.-.+.+.. ....+...+.+.. ....+.|+ |-+
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvfsrk---------~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVFSRK---------DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEeeccc---------cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 999986421 11101111111110 0112222222222 33333333 334
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
-.+|.++. +.|++||.++-..+ .... -|-..+++++|++||.+ |.+..-||..++..|
T Consensus 313 lvfaiAt~-------~svyvydtq~~~P~-----~~v~nihy~~iTDiaws~dg~~-----l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 313 LVFAIATK-------NSVYVYDTQTLEPL-----AVVDNIHYSAITDIAWSDDGSV-----LLVSSTDGFCSLVTF 371 (434)
T ss_pred eEEEEeec-------ceEEEeccccccce-----EEEeeeeeeeecceeecCCCcE-----EEEeccCCceEEEEE
Confidence 45566665 57999999874333 3333 48889999999999875 777777888877655
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=163.87 Aligned_cols=262 Identities=16% Similarity=0.208 Sum_probs=184.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.|..+.|+|.+.-|......+.+..|++....-... ..+......-|.|++|.++ +..+++.++|.|.||+...
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~---- 276 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGT---- 276 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCC----
Confidence 367889999887777777889999999864221111 1222223467999999999 6788999999999999861
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC--------------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------------- 245 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-------------- 245 (445)
.+..+....|. +.|.+++.-.+|.+|- |+.|+ .|..||-.-.
T Consensus 277 ---------------------~~~~k~~~aH~-ggv~~L~~lr~GtllS-GgKDR-ki~~Wd~~y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 277 ---------------------NRISKQVHAHD-GGVFSLCMLRDGTLLS-GGKDR-KIILWDDNYRKLRETELPEQFGPI 332 (626)
T ss_pred ---------------------ceEEeEeeecC-CceEEEEEecCccEee-cCccc-eEEeccccccccccccCchhcCCe
Confidence 12333344664 8999999999987665 88895 9999983211
Q ss_pred ---------------------------CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe
Q 013338 246 ---------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV 298 (445)
Q Consensus 246 ---------------------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v 298 (445)
.....+.|....+.++.+|+..++++++.|+.+++|+ ..+...-.....++
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~ 410 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA 410 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce
Confidence 0122334556788999999999999999999999999 33443333456678
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
.++.|+|.| .++++.. -+.|-+-+.. +...+..-.....++.++|+|+|.+||.|+.| +
T Consensus 411 ~~~~fhpsg-~va~Gt~----~G~w~V~d~e----------~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d------~ 469 (626)
T KOG2106|consen 411 ECADFHPSG-VVAVGTA----TGRWFVLDTE----------TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD------N 469 (626)
T ss_pred eEeeccCcc-eEEEeec----cceEEEEecc----------cceeEEEEecCCceEEEEEcCCCCEEEEecCC------C
Confidence 999999999 7776633 3444443321 11112222222279999999999999999998 9
Q ss_pred EEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 379 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.|+||.+..+... ...++... ..+|+.+.||+|++|
T Consensus 470 ~iyiy~Vs~~g~~-y~r~~k~~--gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 470 HIYIYRVSANGRK-YSRVGKCS--GSPITHLDWSSDSQF 505 (626)
T ss_pred eEEEEEECCCCcE-EEEeeeec--CceeEEeeecCCCce
Confidence 9999999754332 22233333 489999999999998
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=171.68 Aligned_cols=264 Identities=17% Similarity=0.256 Sum_probs=199.4
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+.++.|+.... .+|+.+.|..+++|.-+.+.+.....- ......-.|++......+++++|..+.|+|||+..+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--- 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK--- 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhhhcceeeeccCcCceeeehhhHHH---
Confidence 488999998764 233345788999998554333333222 222334455555555577888888999999999821
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC--CCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~--~~v 257 (445)
.+.+.+++|. ..|+++.++-...+||+++.. |.|.|..+.++.....+.+. ..|
T Consensus 112 ----------------------l~hr~lkdh~-stvt~v~YN~~DeyiAsvs~g-Gdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 112 ----------------------LIHRFLKDHQ-STVTYVDYNNTDEYIASVSDG-GDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred ----------------------HHhhhccCCc-ceeEEEEecCCcceeEEeccC-CcEEEEecccCccccceecCCCCeE
Confidence 2445577786 899999999999999999877 89999999998776655553 556
Q ss_pred eEEEEcCCCCE-EEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.-+.|+|..+. |.+++.+|.|.+||+..... .....|..+...++|+|....|+++.+.|.++..++...
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------- 240 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------- 240 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc-------
Confidence 78999998776 46889999999999988765 345589999999999999998888776666666666532
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......+....+...++|+++|.+|+.|+.. |.|..||++..+ .|+..+..|...|++++|-|.
T Consensus 241 ------~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~------G~~i~YD~R~~k----~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 241 ------QASTDRLTYSHPLSTVAFSECGTYLCAGNSK------GELIAYDMRSTK----APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ------ccccceeeecCCcceeeecCCceEEEeecCC------ceEEEEecccCC----CCceEeeecccceeEEEeeec
Confidence 2223344444479999999999999999887 899999999743 456778889999999999876
Q ss_pred C
Q 013338 415 D 415 (445)
Q Consensus 415 g 415 (445)
.
T Consensus 305 ~ 305 (673)
T KOG4378|consen 305 P 305 (673)
T ss_pred c
Confidence 3
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=160.52 Aligned_cols=240 Identities=14% Similarity=0.248 Sum_probs=163.0
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEE-eecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 219 (445)
.+|.+.|++++|+.||++|++++.|+.|++|+++.-..... ++++ .+. -+..+.+.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------------r~~R~nve---~dhpT~V~ 139 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------------------RCIRQNVE---YDHPTRVV 139 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------------------hHhhcccc---CCCceEEE
Confidence 58999999999999999999999999999999983111000 0111 111 13468899
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCc-------ee------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLG-------TP------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 286 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~-------~~------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 286 (445)
|+||.+-+++....+.++++|.+...+. .. ...|.-.+.++-..-++++|++++.|..|.+|+++..
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq 219 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ 219 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc
Confidence 9999988777665545899998754321 11 1123455667777778999999999999999999955
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEE-cCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
.+..+......-+..+.||+|++|++++ ..|..++.+-+... .... ....+..+++|. .|..++||++.+.
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-----G~fq--ev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-----GTFQ--EVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC-----cchh--hhhhhheeccchhheeeeeeCCCcce
Confidence 4455555555567789999999999663 23333333332211 1111 223466788999 9999999999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCC-------CeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT-------PLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~-------~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+++.|.| |+++|||++-. ++++..+ ..+..-+...-.++.||.|+.
T Consensus 293 ~vtvSkD------G~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~ 345 (420)
T KOG2096|consen 293 AVTVSKD------GKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDS 345 (420)
T ss_pred eEEEecC------CcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcE
Confidence 9999999 99999998621 1111111 112222333347888998874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=168.34 Aligned_cols=264 Identities=14% Similarity=0.193 Sum_probs=201.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|.++||+.+.+.||.+-.+|.|.||++.. ..-....+..+.++.|.+++|++. .+|++.+.+|.|.-||+......
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCcee
Confidence 4699999999999999999999999999964 233334444456778999999955 89999999999999999843332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---eecCCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~~~~ 256 (445)
.. +... .+.|++++.+|.+..++.++.| |.+..++...++.+. +...++.
T Consensus 104 ~~-------------------------~d~~-gg~IWsiai~p~~~~l~Igcdd-Gvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 104 YN-------------------------IDSN-GGAIWSIAINPENTILAIGCDD-GVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred EE-------------------------ecCC-CcceeEEEeCCccceEEeecCC-ceEEEEecCCceEEEEeecccccce
Confidence 22 2322 4799999999999999999988 788888877776533 2234689
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-----ccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----WSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-----~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
|.+++|+|++..|+.|+.||.|++||..++.... +.. ...-|+++.|-.++. |+++ +. -+.+.+|+
T Consensus 157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sg-DS---~G~V~FWd 231 (691)
T KOG2048|consen 157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASG-DS---AGTVTFWD 231 (691)
T ss_pred EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEe-cC---CceEEEEc
Confidence 9999999999999999999999999999887633 222 233477888876665 4434 32 46677776
Q ss_pred CCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
.. .+..++.+..|. .|.+++.++++.++++++.| +.|..|...+++.. .........|...|
T Consensus 232 ~~----------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd------~~ii~~~~~~~~~~-wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 232 SI----------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVD------PKIIQYSLTTNKSE-WVINSRRDLHAHDV 294 (691)
T ss_pred cc----------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCC------CceEEEEecCCccc-eeeeccccCCcccc
Confidence 43 556677777888 89999999999999999988 88888887765431 22233445688889
Q ss_pred CceeEeec
Q 013338 407 KPVAFSFH 414 (445)
Q Consensus 407 ~~v~~spd 414 (445)
.+++..++
T Consensus 295 rs~av~~~ 302 (691)
T KOG2048|consen 295 RSMAVIEN 302 (691)
T ss_pred eeeeeecc
Confidence 99988776
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=159.88 Aligned_cols=235 Identities=19% Similarity=0.378 Sum_probs=164.0
Q ss_pred CCEEEEEECCCeEEEEEccCC--------------CCcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCC
Q 013338 111 KHIVAFISGSTQVIVRDYEDS--------------EGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~--------------~~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~ 175 (445)
..+.|+=+..|.|.||++... ..+.+.++ .+|...=++|+|||- .+.|+++.+-+.|++|...+
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeecccccccccccCccccceEeeeecc
Confidence 345555568888999987421 11222222 478888899999993 24577777779999999873
Q ss_pred CCCccccccccccccccccCCCCCceEEE-EeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCC---Cceee
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG---LGTPI 250 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~---~~~~~ 250 (445)
+.|..- ..+.+|. ..|-.++|||. ...|++|+.| |+|+|||++.+ .+...
T Consensus 244 -----------------------g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~D-gsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 244 -----------------------GSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCD-GSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred -----------------------CceeecCccccccc-cchhhhccCCccCceEEeeecC-ceEEEEEecCCCccceeEe
Confidence 133322 2255665 89999999994 4578889999 79999999988 34556
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..|.+.|+-+.|+.+-.+|++|+.||+++|||++..+.. .+..|..+|+++.|+|....++.+++.+..+..|++.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 789999999999998889999999999999999987764 6778999999999999877766666666666666654
Q ss_pred cCCC------CccccccCccccccccccCCCccceEEeCCCC-CEEEEEEcC
Q 013338 327 SKPP------SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKG 371 (445)
Q Consensus 327 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~s~d 371 (445)
-... .....+.++....+..-.+.+.+..+.|++.- .+|++.+.|
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 3221 00001111111222222233378999999864 456666665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=157.46 Aligned_cols=267 Identities=15% Similarity=0.169 Sum_probs=188.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCc----------ceeEEecCCCCCeeEEEEC-------cCCCcEEEEec
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK----------DACILTSDSQRDVKVLEWR-------PNGGRSLSVGC 164 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~----------~~~~~~~~~~~~v~~l~~s-------pd~~~l~~~~~ 164 (445)
...+.|||||..|++-+.|..+.+|++...... ....+.-.....|+..+|- |+...+++++.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 357899999999999999999999998532110 1111212345678888884 66556666677
Q ss_pred CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc-c
Q 013338 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV-A 243 (445)
Q Consensus 165 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~-~ 243 (445)
+.-|++||.-++......... ..+..+ ....+++|+|||.+|++|- . ..|++||+ +
T Consensus 132 ~~PIh~wdaftG~lraSy~~y----------------dh~de~-----taAhsL~Fs~DGeqlfaGy-k-rcirvFdt~R 188 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY----------------DHQDEY-----TAAHSLQFSPDGEQLFAGY-K-RCIRVFDTSR 188 (406)
T ss_pred cCceeeeeccccccccchhhh----------------hhHHhh-----hhheeEEecCCCCeEeecc-c-ceEEEeeccC
Confidence 899999998744332221110 000111 2456899999999998874 4 38999999 4
Q ss_pred CCCce---eee-----cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 244 QGLGT---PIR-----RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 244 ~~~~~---~~~-----~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.|.-. ... ...+-+.+++|+|. .+.+++++...++-||.-..+.. ..+-+|.+.|+.++|.++|+.|+++
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 45321 111 22467889999996 55889999999999998877766 5566999999999999999999998
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccc--eEEeCCCCCEEEEEEcCCCcccceEEEEEEccC-C
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIE--KIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-T 388 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~--~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~-~ 388 (445)
...+..+-.|++.. ...++-.+..|. .-. -+...|+|++|++|+.+ |.|++||++. +
T Consensus 269 aRk~dkIl~WDiR~------------~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td------G~V~vwdlk~~g 330 (406)
T KOG2919|consen 269 ARKDDKILCWDIRY------------SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTD------GSVRVWDLKDLG 330 (406)
T ss_pred ccCCCeEEEEeehh------------ccchhhhhhhhccCccceEEEecCCCCceeeccCCC------ccEEEEecCCCC
Confidence 87777777777653 223333444443 122 24456899999999888 9999999987 4
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.. +..+..|...|+.|++.|-
T Consensus 331 n~-----~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 331 NE-----VSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred Cc-----ccccccccccccceecCcc
Confidence 42 3356678899999999986
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=153.77 Aligned_cols=261 Identities=16% Similarity=0.292 Sum_probs=190.1
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
+..+|.+-|+++.|.+-|+++++++.|++++|||.+.. .+.|.+....+.|. +.|..+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------------s~~W~~Ts~Wrah~-~Si~rV 65 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------------SGTWSCTSSWRAHD-GSIWRV 65 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---------------------CCceEEeeeEEecC-CcEEEE
Confidence 44578999999999999999999999999999997621 34788888899996 899999
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCC----------CceeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCC
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQG----------LGTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~----------~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~ 284 (445)
.|.+ =|+.+|+++.| +++.||.-... ++..+......|++++|.|. |-.|++++.||.+|||+.-
T Consensus 66 ~WAhPEfGqvvA~cS~D-rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYD-RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred EecCccccceEEEEecC-CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 9965 58999999999 69999975211 11234456789999999996 7789999999999999865
Q ss_pred CC------Ccc-ccc-------CCCCCeeEEEECCC---CCeEEEEEcCCc-eEEEEEeccCCCCccccccCcccccccc
Q 013338 285 TW------TSE-PWS-------STSGFVTGATWDPE---GRMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 285 ~~------~~~-~~~-------~~~~~v~~~~~sp~---~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.. .++ .+. .+..+..|+.|+|. ..+|+++++.+. ......+|...... .....+.+
T Consensus 145 dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~------rKw~kva~ 218 (361)
T KOG2445|consen 145 DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG------RKWLKVAE 218 (361)
T ss_pred CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc------ceeeeehh
Confidence 42 221 111 35567789999974 467887766521 11222222111000 03345667
Q ss_pred ccCCC-ccceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCC---------------CeeeeeeeeeeeCCCCCC
Q 013338 347 LTGSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRT---------------PLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 347 ~~~~~-~v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~---------------~~~~~~~~~~~~~~~~~v 406 (445)
+.+|. +|++++|.|+- ..||+++.| | |+||+++.. ..+....+..+.+|...|
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKD------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecC------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 77888 99999999963 578999888 7 999998731 112244566677899999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
+.+.|.-.| .+|+-.-++|.|..|.-.|.
T Consensus 292 Wrv~wNmtG-----tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 292 WRVRWNMTG-----TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred EEEEEeeee-----eEEeecCCCceeeehhhhhh
Confidence 999997654 46777778999988765543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=163.11 Aligned_cols=286 Identities=16% Similarity=0.191 Sum_probs=197.4
Q ss_pred CCeeEEEEccCC--CEEEEEECCCeEEEEEccC--CCCcceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQHK--HIVAFISGSTQVIVRDYED--SEGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g--~~la~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~ 174 (445)
.+|.+++|+|.. +++|+|...|+|-+||+.. ++... ..+...|..+|.+|.|+|.. .++++++.||+|++-|++
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-eEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 479999999976 5888899999999999952 12222 23345799999999999954 468888999999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~ 252 (445)
..... .+.+ +... ...+.++.|+.+...++++..- |...+||++++.. ..+.-
T Consensus 266 ~~i~e-~v~s----------------------~~~d-~~~fs~~d~~~e~~~vl~~~~~-G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 266 GNISE-EVLS----------------------LDTD-NIWFSSLDFSAESRSVLFGDNV-GNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred chhhH-HHhh----------------------cCcc-ceeeeeccccCCCccEEEeecc-cceEEEEeecCCccchhhhh
Confidence 32211 1111 1111 2567788898888888888877 6999999998755 44556
Q ss_pred CCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 253 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 253 ~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
|...|.+++++|.. .+|++++.|++++|||++.-..+ ....|...|.++.|||.+-.|++.+ .+..+++++..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss 399 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSS 399 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceEEeecc
Confidence 77899999999974 46789999999999999875442 2347889999999999988877553 33445544431
Q ss_pred cCCCCccccccCcccccccccc---CCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLT---GSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~---~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
-. .. ...+..++. .+. .....+|.|+..++++|..- ..|-|+|-..++.+ ..+.
T Consensus 400 ~~----sa-----~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~------r~IDv~~~~~~q~v-----~el~ 459 (498)
T KOG4328|consen 400 CI----SA-----KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP------RPIDVFDGNGGQMV-----CELH 459 (498)
T ss_pred cc----cc-----cCCccceeeccCcccccccchhheeCCCccEEEEeccC------cceeEEcCCCCEEe-----eecc
Confidence 00 00 111111121 111 46677899999999998766 67999998877644 2333
Q ss_pred CCC-CCCCce-eEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 401 GPG-DNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 401 ~~~-~~v~~v-~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
... ..|.++ .|+|-+.- +++-+-+.|.|.+|.
T Consensus 460 ~P~~~tI~~vn~~HP~~~~----~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDT----LAAGGNSSGKIYVFT 493 (498)
T ss_pred Cccccccccceeecccccc----eeccCCccceEEEEe
Confidence 222 244443 78887552 455556778887653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=153.20 Aligned_cols=199 Identities=15% Similarity=0.265 Sum_probs=146.1
Q ss_pred cCcCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCc--------ceeEE----ecCCCCCeeEEEECcCCCcE-EEE
Q 013338 97 LPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGK--------DACIL----TSDSQRDVKVLEWRPNGGRS-LSV 162 (445)
Q Consensus 97 ~~~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~--------~~~~~----~~~~~~~v~~l~~spd~~~l-~~~ 162 (445)
.++..|+++...+ .|+++++|+.||.|.+||++..+.. .++.+ ..+|.-.|.++.|-|-..-+ .++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3467899999987 5899999999999999999765421 11211 23577889999999854444 455
Q ss_pred ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC---CCeEEEEEecCCeEEE
Q 013338 163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTI 239 (445)
Q Consensus 163 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~v 239 (445)
+.|.+++|||.++.+... .++- ++.|.+-++||- ..++|+|..+ -.|++
T Consensus 121 SFDhtlKVWDtnTlQ~a~-------------------------~F~m--e~~VYshamSp~a~sHcLiA~gtr~-~~VrL 172 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAV-------------------------DFKM--EGKVYSHAMSPMAMSHCLIAAGTRD-VQVRL 172 (397)
T ss_pred cccceEEEeecccceeeE-------------------------Eeec--CceeehhhcChhhhcceEEEEecCC-CcEEE
Confidence 568999999998433322 2222 267888888883 3355666556 59999
Q ss_pred EEccCCCcee-eecCCCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCC-c---------------ccccCCCCCeeEE
Q 013338 240 WDVAQGLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWT-S---------------EPWSSTSGFVTGA 301 (445)
Q Consensus 240 wd~~~~~~~~-~~~~~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~-~---------------~~~~~~~~~v~~~ 301 (445)
.|+..|.... +.+|.+.|.++.|+|...+ |++|+.||.|++||++.-. + +.-..|.+.++.+
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 9999998854 6678999999999998776 5799999999999998531 1 1123677889999
Q ss_pred EECCCCCeEEEEEcCCceEEEEEecc
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
+|+.++.++++++ .+..+++|+
T Consensus 253 a~tSd~~~l~~~g----td~r~r~wn 274 (397)
T KOG4283|consen 253 AWTSDARYLASCG----TDDRIRVWN 274 (397)
T ss_pred eecccchhhhhcc----CccceEEee
Confidence 9999999999763 334444444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=177.13 Aligned_cols=240 Identities=16% Similarity=0.232 Sum_probs=186.8
Q ss_pred EEEECc-CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 149 VLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 149 ~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
.+..+. .+++|+++|.||.|++|++......... .+...++.|. ..|+.++..-+++.|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~-------------------~~~asme~Hs-DWVNDiiL~~~~~tl 88 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST-------------------PYIASMEHHS-DWVNDIILCGNGKTL 88 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCccc-------------------chhhhhhhhH-hHHhhHHhhcCCCce
Confidence 444444 4455999999999999998733221100 1233466665 899999999999999
Q ss_pred EEEEecCCeEEEEEccCCC--c-eeeecCCCCeeEEEE-cCCCCEEEEEecCCeEEEEeCCCCCc-----------cccc
Q 013338 228 ASASYESSSFTIWDVAQGL--G-TPIRRGFGGLSILKW-SPTGDYFFAAKFDGTFYLWETNTWTS-----------EPWS 292 (445)
Q Consensus 228 ~~~~~d~g~v~vwd~~~~~--~-~~~~~~~~~v~~~~~-sp~g~~l~~~~~dg~v~iwd~~~~~~-----------~~~~ 292 (445)
++++.| -+|++|+...+. + ..+..|...|.|+++ .++...+|+|+-|+.|.+||+.++.. ..+.
T Consensus 89 IS~SsD-tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 89 ISASSD-TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred EEecCC-ceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence 999999 499999998763 2 446678999999999 78888999999999999999997732 1122
Q ss_pred -CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEc
Q 013338 293 -STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
++...|.+++.++.|..++.| +..+.+++|+.. ..+.+..+.+|. .|..+..++||..++++|+
T Consensus 168 sG~k~siYSLA~N~t~t~ivsG----gtek~lr~wDpr----------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSG----GTEKDLRLWDPR----------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred CCCccceeeeecCCcceEEEec----CcccceEEeccc----------cccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence 677789999999999777765 456788888875 666777888999 9999999999999999999
Q ss_pred CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 371 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 371 d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
| |+|++||+...+++ .++..|.+.|+++.-+|+=. .+-.|-.+|.|..-+++-
T Consensus 234 D------gtIrlWdLgqQrCl-----~T~~vH~e~VWaL~~~~sf~-----~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 234 D------GTIRLWDLGQQRCL-----ATYIVHKEGVWALQSSPSFT-----HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred C------ceEEeeecccccee-----eeEEeccCceEEEeeCCCcc-----eEEecCCCCcEEecccCC
Confidence 8 99999999865444 57888999999999887633 344556777777766653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=175.53 Aligned_cols=238 Identities=15% Similarity=0.206 Sum_probs=188.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--C-CcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--G-GRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~-~~l~~~~~dg~i~vw~~~~~ 176 (445)
..+++++.||+|++||+|..-|+++||++.. -+..+.+ ..|...|.||.|+.- + +.|++++.|.-|.|||+..
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r- 535 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR- 535 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehh--hhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-
Confidence 3699999999999999999999999999953 3333333 579999999999752 2 3455566789999999871
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCC--Cceeeec
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQG--LGTPIRR 252 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~--~~~~~~~ 252 (445)
.+.++.++.+|. ..|+++.|--+| ..+++++.|+ ..+|+.... ....+..
T Consensus 536 -----------------------ny~l~qtld~HS-ssITsvKFa~~gln~~MiscGADk--simFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 536 -----------------------NYDLVQTLDGHS-SSITSVKFACNGLNRKMISCGADK--SIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred -----------------------ccchhhhhcccc-cceeEEEEeecCCceEEEeccCch--hhheehhccccCceeccc
Confidence 344667788886 899999998876 6788888884 455555431 1122222
Q ss_pred -----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 253 -----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 253 -----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
.+..+++++..|..+++++++.|..|+|||+.+++..+ ++ .|.+....+...|.|-||++++.+ ..+..+
T Consensus 590 ~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-ktl~~~ 668 (1080)
T KOG1408|consen 590 HTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-KTLCFV 668 (1080)
T ss_pred cccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC-CceEEE
Confidence 24678999999999999999999999999999998843 33 566778889999999999987654 345555
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++. .++++.++.+|. .|+.+.|.+|-+.|++.+.| |+|+||.+..
T Consensus 669 Df~-------------sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD------gCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFV-------------SGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD------GCIFVWKLPL 714 (1080)
T ss_pred Eec-------------cchhhhhhcCcchheeeeeecccchhheeecCC------ceEEEEECch
Confidence 554 788999999999 89999999999999999988 9999999864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=159.90 Aligned_cols=241 Identities=14% Similarity=0.220 Sum_probs=191.7
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|+.++-......+-+++.|.+.+||.++ ++ .|+..+.+|. +.|++++|
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E---------sg----------------~CL~~Y~GH~-GSVNsikf 198 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLE---------SG----------------ACLATYTGHT-GSVNSIKF 198 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeec---------cc----------------cceeeecccc-cceeeEEe
Confidence 5899999999987764555566678999999998 33 4777789997 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEcc------CC-----------------------------------CceeeecCCCCeeE
Q 013338 221 GPDGRYLASASYESSSFTIWDVA------QG-----------------------------------LGTPIRRGFGGLSI 259 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~------~~-----------------------------------~~~~~~~~~~~v~~ 259 (445)
++.+.++++++.| ++..||... .. ....+.+|.+.|.+
T Consensus 199 h~s~~L~lTaSGD-~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGLLLLTASGD-ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccceEEEccCC-cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999 699999621 10 01234567778889
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (445)
..|-..|+.+++++.|.+..+||+++++. ..+.+|....+.++-+|..++++++ ..+-.+++|+-++
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs----SrDtTFRLWDFRe-------- 345 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS----SRDTTFRLWDFRE-------- 345 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe----ccCceeEeccchh--------
Confidence 99999999999999999999999999998 6788999999999999999988876 4456667776432
Q ss_pred ccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 339 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 339 ~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.-..+..|.+|. .|+++.|.-+.+ +++|+.| .+|+|||+++... ++.+++. ..+++.++.+..+
T Consensus 346 -aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD------rTvKvWdLrNMRs----plATIRt-dS~~NRvavs~g~-- 410 (481)
T KOG0300|consen 346 -AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD------RTVKVWDLRNMRS----PLATIRT-DSPANRVAVSKGH-- 410 (481)
T ss_pred -hcceeeeecccccceeEEEEecCCc-eeecCCC------ceEEEeeeccccC----cceeeec-CCccceeEeecCC--
Confidence 334567889999 999999988765 6677776 9999999997543 3445543 5678888887554
Q ss_pred CCCCeEEEEecCeeeEeeeee
Q 013338 418 KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++++-.++-.|.+|++-
T Consensus 411 ---~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 411 ---PIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ---ceEEeccCCceEEEEecC
Confidence 468999999999999874
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-22 Score=184.42 Aligned_cols=247 Identities=15% Similarity=0.254 Sum_probs=196.1
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
.+.+++....+-.+++|+... + ..|...|.++..-..++.++.++.|..+.+|.+....
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~--------~-~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------------ 61 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTRE--------F-VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------------ 61 (825)
T ss_pred cccccceeeeeeccccccchh--------h-hhhhhhhceeeeeccceeeccCCCceeeccccccCCc------------
Confidence 334455555566677887531 1 2377888888886666667777778888899887221
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDY 268 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~ 268 (445)
.+..+.+|. .+|.++.|+++..+|+.|+.+ |+|++||+...+. ..+.+|...+.++.|+|-+.+
T Consensus 62 -------------~i~S~~~he-spIeSl~f~~~E~Llaagsas-gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 62 -------------AITSLTGHE-SPIESLTFDTSERLLAAGSAS-GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred -------------hhheeeccC-CcceeeecCcchhhhcccccC-CceeeeehhhhhhhhhhhccccCcceeeeccceEE
Confidence 222367785 899999999999999999999 7999999998765 457788899999999999999
Q ss_pred EEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 269 FFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
++.++.|..+.+||.+...+ ..+.+|...+..+.|+|+|++++.+++ +..+++|+.. .++.+.+|
T Consensus 127 ~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~----------agk~~~ef 192 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLT----------AGKLSKEF 192 (825)
T ss_pred eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeeccc----------cccccccc
Confidence 99999999999999996555 666778888999999999999998743 5677777654 55667788
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+.|. .+..+.|+|..-.+++|+.| .++++||+++-+.+ .........|.+.+|+|+|+.
T Consensus 193 ~~~e~~v~sle~hp~e~Lla~Gs~d------~tv~f~dletfe~I-----~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 193 KSHEGKVQSLEFHPLEVLLAPGSSD------RTVRFWDLETFEVI-----SSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred ccccccccccccCchhhhhccCCCC------ceeeeeccceeEEe-----eccCCccCCceeeeecCCcee
Confidence 8888 89999999999999999988 99999999974444 344445678999999999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=170.60 Aligned_cols=279 Identities=15% Similarity=0.253 Sum_probs=201.9
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|+.++|-|||..|+.+. +..+.|||.+ +|..+..+ .+|.+.|++++|+.||.++++++.|..|.+|+-...
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~n--dG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---- 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTS--DGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---- 85 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCC--Cccccccc-ccccceEEEEEEccCCceeccCCCceeEEEeccccc----
Confidence 689999999999888764 5568899985 46666666 689999999999999999999999999999997732
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
..++..|.+.|.|+.|+|-...|++++.. ..-+|........ .......+.++
T Consensus 86 ------------------------G~LkYSH~D~IQCMsFNP~~h~LasCsLs--dFglWS~~qK~V~-K~kss~R~~~C 138 (1081)
T KOG1538|consen 86 ------------------------GILKYSHNDAIQCMSFNPITHQLASCSLS--DFGLWSPEQKSVS-KHKSSSRIICC 138 (1081)
T ss_pred ------------------------ceeeeccCCeeeEeecCchHHHhhhcchh--hccccChhhhhHH-hhhhheeEEEe
Confidence 22343345899999999999999999876 5889987654332 22335678999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+|..||++|+.|-.+|+|.+-+-...+...+. +.+.+|.+++|+|.... +.+..+.+++ |+.. ...+
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~-----G~~di~aV~D-W~qT----LSFy 208 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGE-----GRNDILAVAD-WGQT----LSFY 208 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCC-----CccceEEEEe-ccce----eEEE
Confidence 99999999999999999998865443333333 46788999999997531 1111122222 2110 0111
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..++..+..-..-. ...++.+-++|.+++.|+.| +.+.+|--+. ..++++......|+.|+..|+++
T Consensus 209 ~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd------k~L~~fTR~G------vrLGTvg~~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 209 QLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD------KQLSLFTRDG------VRLGTVGEQDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EecceeecccccCCCCchhheeccCCcEEEEccCC------CceEEEeecC------eEEeeccccceeEEEEEEccCCc
Confidence 11333333222222 46788899999999999888 8899987553 22334444567899999999998
Q ss_pred CCCCCeEEEEecCeeeEeeeeeeec
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
+ .++|.-+|.|..|.+.+.+
T Consensus 277 ~-----v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 277 Y-----VVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred e-----EEEEEccCeeehhhhHHhH
Confidence 6 8999999999988877543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-18 Score=157.40 Aligned_cols=283 Identities=13% Similarity=0.148 Sum_probs=180.3
Q ss_pred EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccc
Q 013338 115 AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 115 a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
++...++.|++|+++. +++........+.+....++++|+++.|++++. ++.|.+|+++..+...
T Consensus 6 ~~~~~~~~I~~~~~~~-~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~------------- 71 (330)
T PRK11028 6 IASPESQQIHVWNLNH-EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT------------- 71 (330)
T ss_pred EEcCCCCCEEEEEECC-CCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-------------
Confidence 3346789999999953 343222221234566788999999887777654 5899999987222211
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCc---eeeecCCCCeeEEEEcCCCCEE
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLG---TPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~---~~~~~~~~~v~~~~~sp~g~~l 269 (445)
....... ......++|+|++++|++++..++.|.+|+++. +.. .....+...+..++++|+++++
T Consensus 72 ---------~~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 72 ---------FAAESPL--PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTL 140 (330)
T ss_pred ---------EeeeecC--CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEE
Confidence 1111111 135678999999999999887557999999974 322 2222334557788999999988
Q ss_pred EEEe-cCCeEEEEeCCCCC-ccc-----c-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 270 FAAK-FDGTFYLWETNTWT-SEP-----W-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 270 ~~~~-~dg~v~iwd~~~~~-~~~-----~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
++++ .++.|.+||+.+.. +.. . .........+.|+|+|++++++...+..+..+++........ ..
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~--~~---- 214 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE--CV---- 214 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE--EE----
Confidence 6554 56899999998632 211 0 112345678999999999998877677777777643211100 00
Q ss_pred cccccc----cCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 342 PDIVSL----TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 342 ~~~~~~----~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
..+..+ .+......+.++|+|++|+++.... +.|.+|+++..... ...++.+.. ......++|+|||++
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-----~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-----SLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNIDHSGKY 287 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-----CeEEEEEEeCCCCe-EEEeEEEec-cccCCceEECCCCCE
Confidence 001111 1111344689999999999985432 79999999653321 222333332 235678999999987
Q ss_pred CCCCeEEEEecCeeeEeeeeee
Q 013338 418 KQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+++....++.|.+|.+..
T Consensus 288 ----l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 288 ----LIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ----EEEEEccCCcEEEEEEcC
Confidence 344455588999987753
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=166.47 Aligned_cols=283 Identities=11% Similarity=0.106 Sum_probs=195.3
Q ss_pred EEEEcc---CCCEEEEEECCCeEEEEEccCCCCc-cee--EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 104 GVSWHQ---HKHIVAFISGSTQVIVRDYEDSEGK-DAC--ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 104 ~~~~sp---~g~~la~~~~d~~i~iw~~~~~~~~-~~~--~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+..|++ ....||.+..+|.|.++|......+ +.+ .....|...|..+.|-|-...|++.+.|.++++||+...+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 345554 3467888999999999997543322 111 2234699999999999965667778889999999998332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc---------
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG--------- 247 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~--------- 247 (445)
.. -...+.+|. ..|.+++|.|.. ..+++|+.| |.|.|||++-...
T Consensus 134 l~-----------------------G~~~~~GH~-~SvkS~cf~~~n~~vF~tGgRD-g~illWD~R~n~~d~~e~~~~~ 188 (720)
T KOG0321|consen 134 LV-----------------------GGRLNLGHT-GSVKSECFMPTNPAVFCTGGRD-GEILLWDCRCNGVDALEEFDNR 188 (720)
T ss_pred ee-----------------------cceeecccc-cccchhhhccCCCcceeeccCC-CcEEEEEEeccchhhHHHHhhh
Confidence 21 112366775 899999999954 567788888 7999999874310
Q ss_pred -------------------eeeecCCCCeeE---EEEcCCCCEEEEEec-CCeEEEEeCCCCCcc---------cccCC-
Q 013338 248 -------------------TPIRRGFGGLSI---LKWSPTGDYFFAAKF-DGTFYLWETNTWTSE---------PWSST- 294 (445)
Q Consensus 248 -------------------~~~~~~~~~v~~---~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~---------~~~~~- 294 (445)
.....+...|.+ +.+..|...||+++. |+.|+|||+++.... .+..+
T Consensus 189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 000112223433 445568889998888 999999999986641 11122
Q ss_pred --CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--c-cceEEeCCCCCEEEEEE
Q 013338 295 --SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--G-IEKIAWDASGERLAVSY 369 (445)
Q Consensus 295 --~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-v~~~~~sp~g~~l~~~s 369 (445)
.-.+.++.....|.+|++.+. |+.|+.+++... ...++..+.++. . -..-..+||+.+|++|+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~-----------s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSL-----------SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS 336 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEec-CCcEEEEecccc-----------CcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence 234677888888899887765 566777666433 333444455444 1 12224689999999999
Q ss_pred cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 370 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.| ...++|.+.+-+.- ...+.||.-.|++|+|.|.. ...++++ -+|-++.+|.+
T Consensus 337 sd------~~ayiw~vs~~e~~----~~~l~Ght~eVt~V~w~pS~---~t~v~Tc-SdD~~~kiW~l 390 (720)
T KOG0321|consen 337 SD------EQAYIWVVSSPEAP----PALLLGHTREVTTVRWLPSA---TTPVATC-SDDFRVKIWRL 390 (720)
T ss_pred CC------cceeeeeecCccCC----hhhhhCcceEEEEEeecccc---CCCceee-ccCcceEEEec
Confidence 98 89999999875433 44677999999999998863 3455665 78888888877
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=160.42 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=172.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
+-|+.++++. ..+++++.|.+|+.|.++. ....++. ....+..+.-+..+..++++|. .|.|||.......
T Consensus 110 G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~---~p~~til--g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv 180 (433)
T KOG0268|consen 110 GLVRGICVTQ--TSFFTVGDDKTVKQWKIDG---PPLHTIL--GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPV 180 (433)
T ss_pred CceeeEEecc--cceEEecCCcceeeeeccC---Ccceeee--ccccccccccccccccccccCc--eeeecccccCCcc
Confidence 3588888877 6778899999999999863 3444443 4556777777666455555544 4889999844443
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCceeeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
..+.-+ . ..|.++.|+|-.. .|++++.| +.|.+||++++............+
T Consensus 181 ~smswG-------------------------~-Dti~svkfNpvETsILas~~sD-rsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 181 SSMSWG-------------------------A-DSISSVKFNPVETSILASCASD-RSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred ceeecC-------------------------C-CceeEEecCCCcchheeeeccC-CceEEEecccCCccceeeeecccc
Confidence 333222 2 6899999999554 56666678 699999999998876666667788
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.++|+|.+-.+++|++|..++.||++.... ....+|.+.|.++.|||.|+-+++| +.+..+++......
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg----syDksIRIf~~~~~----- 304 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG----SYDKSIRIFPVNHG----- 304 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc----cccceEEEeecCCC-----
Confidence 999999888899999999999999997654 4566899999999999999999977 44555555443211
Q ss_pred cCccccccccccC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 337 LPVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 337 ~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.....+.. .+.|.++.||.|.+|+++||.| +.|++|....
T Consensus 305 -----~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd------~nvRlWka~A 346 (433)
T KOG0268|consen 305 -----HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD------GNVRLWKAKA 346 (433)
T ss_pred -----cchhhhhHhhhheeeEEEEeccccEEEecCCC------cceeeeecch
Confidence 11111111 1169999999999999999988 8999999764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=156.58 Aligned_cols=265 Identities=15% Similarity=0.210 Sum_probs=177.9
Q ss_pred CCCCCeeEEEECcCCCcEEEEe--cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVG--CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
.|.+.++.+.-++-++..++++ ..|.|+||++...- ..+... -........+.+.++.+|. ..=..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l--~~l~~~-------~~~~~~s~~~Pl~t~~ghk-~EGy~Ld 218 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL--NALSEP-------GLEVKDSEFRPLFTFNGHK-GEGYGLD 218 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhh--hhhcCc-------cccccccccCceEEecccC-ccceeee
Confidence 5778888888887765555554 34999999987211 000000 0000112334667788886 7788999
Q ss_pred ECCCC-CeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc---cc
Q 013338 220 WGPDG-RYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS---EP 290 (445)
Q Consensus 220 ~sp~~-~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~---~~ 290 (445)
|||-. ..|++|..- +.|++|...++.. ..+..|...|-.++|||. ...|++|+.||+|+|||++.+.. ..
T Consensus 219 WSp~~~g~LlsGDc~-~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCV-KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccc-cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 99922 236677666 5899999998754 456779999999999997 55788999999999999999843 45
Q ss_pred ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEE
Q 013338 291 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVS 368 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~ 368 (445)
...|.+.|+.++|+..-.+|++| ++++...+|++.... ...++..++.|. +|+++.|+|.. ..|+++
T Consensus 298 ~kAh~sDVNVISWnr~~~lLasG-~DdGt~~iwDLR~~~----------~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPLLASG-GDDGTLSIWDLRQFK----------SGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred eeccCCceeeEEccCCcceeeec-CCCceEEEEEhhhcc----------CCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 57899999999999988877755 444444444443322 446788999999 99999999965 556666
Q ss_pred EcCCCcccceEEEEEEccCCCe-----------eeeeeeeeeeCC--CCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPL-----------ISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~--~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
+.| .+|.+||+.-..- +..-|-+.+.-| ...+..|.|++.- -|.+++.+ -+|.-.|+
T Consensus 367 g~D------~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Qi---PG~lvsTa-~dGfnVfk 436 (440)
T KOG0302|consen 367 GED------NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQI---PGLLVSTA-IDGFNVFK 436 (440)
T ss_pred cCC------CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCC---CCeEEEec-ccceeEEE
Confidence 666 8999999863211 001111223334 2347888888762 33344433 46666666
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
++.
T Consensus 437 tIs 439 (440)
T KOG0302|consen 437 TIS 439 (440)
T ss_pred ecc
Confidence 553
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-20 Score=159.16 Aligned_cols=241 Identities=17% Similarity=0.277 Sum_probs=170.8
Q ss_pred eEEEEcc-------CCCEEEEEECCCeEEEEEccCCCCcceeE------------------EecCCCCCeeEEEECcCCC
Q 013338 103 QGVSWHQ-------HKHIVAFISGSTQVIVRDYEDSEGKDACI------------------LTSDSQRDVKVLEWRPNGG 157 (445)
Q Consensus 103 ~~~~~sp-------~g~~la~~~~d~~i~iw~~~~~~~~~~~~------------------~~~~~~~~v~~l~~spd~~ 157 (445)
.|++|.- -|+++|.|+.|..|.|||++-.+....+. ...+|...|.+|+|+..-+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 25899999999999999997432211111 1226888999999998766
Q ss_pred cEEEE-ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCC
Q 013338 158 RSLSV-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESS 235 (445)
Q Consensus 158 ~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g 235 (445)
.++++ +.|.+|++||+.+.+. ...+..| .+.|.++.|+| ....|++|++| |
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p-------------------------~~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D-~ 309 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKP-------------------------KSSITHH-GKKVQTLEWHPYEPSVLLSGSYD-G 309 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCc-------------------------ceehhhc-CCceeEEEecCCCceEEEecccc-c
Confidence 66655 5689999999994433 3334434 58999999999 56789999999 7
Q ss_pred eEEEEEccCCCc-eeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEE
Q 013338 236 SFTIWDVAQGLG-TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 236 ~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
+|.+.|.+.... -......+.|-.++|.|.. ..+++++.||+|+-+|+|.... ..+..|...|.++++++.-..++
T Consensus 310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence 999999995322 3334457889999999874 4577888999999999998743 56779999999999999888877
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC----ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+..+.+..+..|.+....+ +....|. ...++++.|+-. .||.|+.. +.++|||+.
T Consensus 390 ~t~s~d~~Vklw~~~~~~~--------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k------~~~~vwd~~ 449 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSP--------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK------AVLRVWDIF 449 (463)
T ss_pred eeccccceEEEEeecCCCC--------------cccccccccccceeecccCCCcceEEEecCcc------ceEEEeecc
Confidence 6655554455554432211 1111122 356677778764 45555554 789999998
Q ss_pred CCCe
Q 013338 387 RTPL 390 (445)
Q Consensus 387 ~~~~ 390 (445)
+...
T Consensus 450 ~~~~ 453 (463)
T KOG0270|consen 450 TNSP 453 (463)
T ss_pred cChh
Confidence 7543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=160.25 Aligned_cols=273 Identities=15% Similarity=0.156 Sum_probs=189.8
Q ss_pred EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe--cCCcEEEEccCCCCCccccccccccccccc
Q 013338 116 FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 116 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
.++....++|||+...++...... ..-...+.++.|+.. ..|++.+ .|..+++|.-..+ .+ .+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~-~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~-~~-~V----------- 71 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVH-QTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGK-TP-EV----------- 71 (673)
T ss_pred eeccCCceEEeecccccCcccccc-CCCCCcceeeecccc-ceEEEeecCCceeEEEecccCC-CC-cc-----------
Confidence 345566789999976555433322 112234899999987 4455443 4688899976622 11 11
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEE
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAA 272 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~ 272 (445)
..+....+. .-.|++......++++|+.. |.|+|||++...+. .+..|...|+++.++-...+|+++
T Consensus 72 --------p~~~k~~gd---~~~Cv~~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsv 139 (673)
T KOG4378|consen 72 --------PRVRKLTGD---NAFCVACASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASV 139 (673)
T ss_pred --------ceeeccccc---hHHHHhhhhcceeeeccCcC-ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEe
Confidence 122223333 33444444445899999998 79999999966553 456788999999999999999999
Q ss_pred ecCCeEEEEeCCCCCccc-ccCC-CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 273 KFDGTFYLWETNTWTSEP-WSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~-~~~~-~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
+..|.|.|..+.++.... +... +..++-+.|+|..++++...++++. +.+|+.... .+...-.+.|
T Consensus 140 s~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~---VtlwDv~g~---------sp~~~~~~~H 207 (673)
T KOG4378|consen 140 SDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA---VTLWDVQGM---------SPIFHASEAH 207 (673)
T ss_pred ccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCe---EEEEeccCC---------Ccccchhhhc
Confidence 999999999999987643 3322 4456789999999999877666554 444443221 1122234567
Q ss_pred C-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 351 Q-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 351 ~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
. +...++|+|.. .+|++.+.| ..|.+||+...+... .+ ....+.+.|+|+++|.+ |++|.+
T Consensus 208 sAP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~-----~l-~y~~Plstvaf~~~G~~-----L~aG~s 270 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTD-----RL-TYSHPLSTVAFSECGTY-----LCAGNS 270 (673)
T ss_pred cCCcCcceecCCccceEEEeccc------ceEEEeecccccccc-----ee-eecCCcceeeecCCceE-----EEeecC
Confidence 7 89999999965 566677666 999999998654431 11 23567889999999875 999999
Q ss_pred CeeeEeeeeeeeccCC
Q 013338 429 SGFCCTYPLIFRSHLL 444 (445)
Q Consensus 429 ~G~v~~~~~~~~~~~~ 444 (445)
+|+|.+|+++..+..+
T Consensus 271 ~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPV 286 (673)
T ss_pred CceEEEEecccCCCCc
Confidence 9999999999887654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=147.48 Aligned_cols=276 Identities=14% Similarity=0.187 Sum_probs=198.4
Q ss_pred CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--------CcEEEEccCCCCCcccccccccccc
Q 013338 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--------g~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.|+.|.+..++...+......+..|.+.|+.++-+|..++++++... ..+.||.+.........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------- 109 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc--------
Confidence 67889998888766666666656788999999999988888887643 34679998744333111
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee------cCCCCeeEEEEc
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR------RGFGGLSILKWS 263 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~------~~~~~v~~~~~s 263 (445)
..|.++..+....-+.|.|+.|.|++..+++-. | ..|.+|++..+.. .... .+....++-+|+
T Consensus 110 --------~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-d-n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 110 --------STLECVASLDTEAVGKINCVEWEPNSDKLASMD-D-NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred --------chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-c-CceEEEEcccCcchheeecccccccccceecccccC
Confidence 123445555522236899999999999998875 5 4899999987654 1111 234567888999
Q ss_pred C--CCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 264 P--TGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 264 p--~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
| +|+.+++.+ |++++.||+++.+.. .-..|...+..+.|+|+.+++++++++++.++.|+...
T Consensus 180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~------------ 246 (370)
T KOG1007|consen 180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK------------ 246 (370)
T ss_pred CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC------------
Confidence 8 688887765 899999999987762 23478888999999999999888887776666655432
Q ss_pred cccccccccCCC-ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEccCC------------------------Ceeee
Q 013338 340 DLPDIVSLTGSQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDARRT------------------------PLISL 393 (445)
Q Consensus 340 ~~~~~~~~~~~~-~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~~~~------------------------~~~~~ 393 (445)
...++.++.+|. +|.++.|+|. .++|++++.| ..|.+|....- +.+..
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD------s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD------SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred CCccccccCCCceEEEEEEecCccceEEEecCCC------ceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 456688899999 9999999996 4677788877 88999965321 11222
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
..+.++..|.+.|++++||...-+ +++--.-+|++.+-
T Consensus 321 g~l~tydehEDSVY~~aWSsadPW----iFASLSYDGRviIs 358 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPW----IFASLSYDGRVIIS 358 (370)
T ss_pred cccccccccccceEEEeeccCCCe----eEEEeccCceEEee
Confidence 335567789999999999976444 33333347887653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=178.67 Aligned_cols=231 Identities=15% Similarity=0.245 Sum_probs=182.7
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+...|.++..-..++.+++|+.|..+-+|.+... ..+..+ .+|..+|.++.|+++...+.+++.+|+|++||+...
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCC--chhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 33456777777777899999999999999998432 222333 589999999999999666667777899999999832
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~ 255 (445)
..++++.+|. ..+.++.|+|-+.+.+.++.| +.+++||.+...+. ....|..
T Consensus 103 -------------------------k~vrtLtgh~-~~~~sv~f~P~~~~~a~gStd-td~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 103 -------------------------KIVRTLTGHL-LNITSVDFHPYGEFFASGSTD-TDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred -------------------------hhhhhhhccc-cCcceeeeccceEEecccccc-ccceehhhhccCceeeecCCcc
Confidence 2345577786 799999999999999999999 69999999955554 4455778
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.+..+.|+|+|++++.+++|..++|||...++. ..+..|...+.++.|+|..-+++.+ +.+..+++|+..
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G----s~d~tv~f~dle----- 226 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG----SSDRTVRFWDLE----- 226 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC----CCCceeeeeccc-----
Confidence 899999999999999999999999999999998 5677899999999999988777765 446777777543
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
+...+....... +|.+.+|+|+++.+++|-..
T Consensus 227 -----tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 227 -----TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred -----eeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 233333333334 79999999999999887543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=146.06 Aligned_cols=226 Identities=16% Similarity=0.198 Sum_probs=167.3
Q ss_pred cCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCC--ccccccccccccccccCCCCCceEEE---EeecccCCCc
Q 013338 141 SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN--AASVRSGAASFLGALSRGPGTRWTLV---DFLRSQNGEQ 214 (445)
Q Consensus 141 ~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 214 (445)
..|.+.|+++...+ .|+++++++.||.|.+||++.... ..-+...+ .++ ..-.+|+ -.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------------~c~v~~~h~~~Hk-y~ 103 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------------KCIVAKQHENGHK-YA 103 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------------eeeccccCCccce-ee
Confidence 45889999999977 456788888999999999984331 11111100 010 1123343 78
Q ss_pred eeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCC---CEEEEEecCCeEEEEeCCCCCc-c
Q 013338 215 ITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 215 v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
|.++.|-| |.-.+.+++.|. ++++||.++.+....+..++.|++-+|+|-. -++++|..+-.|++.|+.++.. .
T Consensus 104 iss~~WyP~DtGmFtssSFDh-tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTSSSFDH-TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eeeeEEeeecCceeecccccc-eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 99999999 666777888895 9999999998887788888999999999853 3677888888999999999998 6
Q ss_pred cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc---cccccccccCCC-ccceEEeCCCCCEE
Q 013338 290 PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV---DLPDIVSLTGSQ-GIEKIAWDASGERL 365 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~v~~~~~sp~g~~l 365 (445)
.+.+|...|.++.|+|...++++.++.|+.++.|++......... +... ..+.+++-..|. .|++++|+.||.++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~-lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRV-LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEE-eecccCccCccccccccccceeeeeeecccchhh
Confidence 788999999999999999999987777666666665443221110 1100 112233344566 89999999999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCCe
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
++++.| ..+++|+..+|+-
T Consensus 262 ~~~gtd------~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 262 ASCGTD------DRIRVWNMESGRN 280 (397)
T ss_pred hhccCc------cceEEeecccCcc
Confidence 999888 8999999987754
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=164.79 Aligned_cols=301 Identities=17% Similarity=0.204 Sum_probs=208.8
Q ss_pred eeEEEEccCC--CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHK--HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g--~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|+++ ++|.- +.++.|+..|.+.||++. +++.+.++ .++...|+++.-+|-=..++.+..+|+|.++++...+..
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVR--TGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEec--cCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 4444 45543 567789999999999995 58777777 468899999999997555556667899999999966544
Q ss_pred cccccc-------ccccccc--ccCC-CCCc---eE-----EEEeec-ccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 180 ASVRSG-------AASFLGA--LSRG-PGTR---WT-----LVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 180 ~~~~~~-------~~~~~~~--~~~~-~~~~---~~-----~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
..+... .+..++. ++.+ +.+. |. +...++ .| .+.|....|-|....+++++.|+ .+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah-~~sv~~~~fl~~epVl~ta~~Dn-Slk~~ 315 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH-YGSVTGATFLPGEPVLVTAGADN-SLKVW 315 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc-cCCcccceecCCCceEeeccCCC-ceeEE
Confidence 433321 1222221 1111 1121 22 122233 34 35666667777666677776663 66555
Q ss_pred EccCC---------------------------------------------------------------------------
Q 013338 241 DVAQG--------------------------------------------------------------------------- 245 (445)
Q Consensus 241 d~~~~--------------------------------------------------------------------------- 245 (445)
-.+++
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 33211
Q ss_pred -------------------------------------Cc-eeeecC------CCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 246 -------------------------------------LG-TPIRRG------FGGLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 246 -------------------------------------~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
.. .....+ ...+++++.++.|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 00 001111 2467889999999999999999999999
Q ss_pred eCCCCCccc-c---cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEE
Q 013338 282 ETNTWTSEP-W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 357 (445)
Q Consensus 282 d~~~~~~~~-~---~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 357 (445)
++.++-.+. + ..|...|+.++...-++.++++ +..+.+.+|+... ...+..+.-...+..+.
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa----~~~Gilkfw~f~~----------k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA----GADGILKFWDFKK----------KVLKKSLRLGSSITGIV 541 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEc----cCcceEEEEecCC----------cceeeeeccCCCcceee
Confidence 999987643 3 4899999999999888888877 3356677776432 22233333333688888
Q ss_pred eCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 358 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 358 ~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
.+.....+|.+..| -.|+++|+.+.+.+ +.+.||+..|++++|||||++ |..+.-|+.|.+|++
T Consensus 542 ~hr~s~l~a~~~dd------f~I~vvD~~t~kvv-----R~f~gh~nritd~~FS~DgrW-----lisasmD~tIr~wDl 605 (910)
T KOG1539|consen 542 YHRVSDLLAIALDD------FSIRVVDVVTRKVV-----REFWGHGNRITDMTFSPDGRW-----LISASMDSTIRTWDL 605 (910)
T ss_pred eeehhhhhhhhcCc------eeEEEEEchhhhhh-----HHhhccccceeeeEeCCCCcE-----EEEeecCCcEEEEec
Confidence 88888888888777 89999999986665 578899999999999999986 777778999999987
Q ss_pred e
Q 013338 438 I 438 (445)
Q Consensus 438 ~ 438 (445)
.
T Consensus 606 p 606 (910)
T KOG1539|consen 606 P 606 (910)
T ss_pred c
Confidence 5
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-17 Score=152.88 Aligned_cols=248 Identities=11% Similarity=0.118 Sum_probs=163.6
Q ss_pred CeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
....++++|++++|++++ .++.|.+|+++ .+++....-..........++|+|+++.++++.. ++.|.+|+++..+.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 466889999999987765 57889999986 3443322111123445678999999888887765 68999999973332
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-cee------ee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTP------IR 251 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~------~~ 251 (445)
... ....+.+. .....++++|+++++++++...+.|.+||+++.. ... ..
T Consensus 115 ~~~---------------------~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 115 PVA---------------------PIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred CCC---------------------ceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence 211 01111111 3567789999999998877665799999997632 211 11
Q ss_pred cCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCC--CCcc---cccC------CCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSE---PWSS------TSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~--~~~~---~~~~------~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
........++|+|+|++++++.. +++|.+|+++. ++.. .+.. .......+.++|++++++++...+..
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~ 251 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL 251 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe
Confidence 12355788999999999988776 89999999974 3321 1111 11223468899999999988665666
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+..+++..... ....+...........++|+|||++|+++.... ++|.+|+++
T Consensus 252 I~v~~i~~~~~---------~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-----~~v~v~~~~ 304 (330)
T PRK11028 252 ISVFSVSEDGS---------VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-----HHISVYEID 304 (330)
T ss_pred EEEEEEeCCCC---------eEEEeEEEeccccCCceEECCCCCEEEEEEccC-----CcEEEEEEc
Confidence 66666532110 011112221112467899999999999987532 899999885
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=165.19 Aligned_cols=223 Identities=15% Similarity=0.168 Sum_probs=178.0
Q ss_pred EEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 105 VSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 105 ~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
+++-+ ++-+|++|+.|..+.+|... +......+ .+|...|.+++...++ .+++++.|.++++|...
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~--~~~P~~~L-kgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~--------- 130 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLS--QAEPLYTL-KGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIG--------- 130 (745)
T ss_pred ceeccccCcceEeecccceEEEEecC--CCCchhhh-hccccceeeeecCCcC-ceEecccccceEEecch---------
Confidence 55554 45568899999999999984 34444444 7899999999988884 49999999999999987
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEc
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS 263 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~s 263 (445)
.+...+.+|. ..|++++.-|++ .+++|+.|+ +|++|.- ......+.+|...|+.+++-
T Consensus 131 ------------------~l~~~l~gH~-asVWAv~~l~e~-~~vTgsaDK-tIklWk~-~~~l~tf~gHtD~VRgL~vl 188 (745)
T KOG0301|consen 131 ------------------ELVYSLQGHT-ASVWAVASLPEN-TYVTGSADK-TIKLWKG-GTLLKTFSGHTDCVRGLAVL 188 (745)
T ss_pred ------------------hhhcccCCcc-hheeeeeecCCC-cEEeccCcc-eeeeccC-CchhhhhccchhheeeeEEe
Confidence 3455588886 899999999987 788999995 9999985 22345677899999999998
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc
Q 013338 264 PTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 343 (445)
Q Consensus 264 p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (445)
+++ .|++++.||.|++|++.......+.+|.+.+.+++...++..++++ +.++.+++|+. ..+
T Consensus 189 ~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~----gEDrtlriW~~------------~e~ 251 (745)
T KOG0301|consen 189 DDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVST----GEDRTLRIWKK------------DEC 251 (745)
T ss_pred cCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEe----cCCceEEEeec------------Cce
Confidence 765 4789999999999999666668888999999999988888888866 34566777753 355
Q ss_pred cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 344 IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 344 ~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.+.+.-.. .|+++.+-++|.. ++|++| |.||||..+
T Consensus 252 ~q~I~lPttsiWsa~~L~NgDI-vvg~SD------G~VrVfT~~ 288 (745)
T KOG0301|consen 252 VQVITLPTTSIWSAKVLLNGDI-VVGGSD------GRVRVFTVD 288 (745)
T ss_pred EEEEecCccceEEEEEeeCCCE-EEeccC------ceEEEEEec
Confidence 55665555 7899998888884 566677 999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=164.87 Aligned_cols=247 Identities=14% Similarity=0.171 Sum_probs=183.1
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC-CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.|...-+.|+|.|+|..+++++.||.|++|+.... ..+..+. .+ ...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-------------------------~~-g~~v~~ia~ 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-------------------------IS-GELVSSIAC 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-------------------------cc-CceeEEEee
Confidence 58888999999999999999999999999998754 3333322 01 256777765
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCe
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFV 298 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v 298 (445)
.+.+|++++.+ ++|.+|....++.. .+....-++++++++-+|++++.|+.|-.|++.++..... ..+.+|.++|
T Consensus 65 --~s~~f~~~s~~-~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 65 --YSNHFLTGSEQ-NTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred --cccceEEeecc-ceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 44589999999 69999999988775 4455678899999999999999999999999999987665 6788999999
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
.++.|+|.+++||++. .++.+..|++.+. ...+.+..-.+ ...+.....+..++|+|+|..++....+ +
T Consensus 142 l~l~~~p~~~fLAvss-~dG~v~iw~~~~~---~~~~tl~~v~k-~n~~~~s~i~~~~aW~Pk~g~la~~~~d------~ 210 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSS-CDGKVQIWDLQDG---ILSKTLTGVDK-DNEFILSRICTRLAWHPKGGTLAVPPVD------N 210 (933)
T ss_pred eeeeEcCCCCEEEEEe-cCceEEEEEcccc---hhhhhcccCCc-cccccccceeeeeeecCCCCeEEeeccC------C
Confidence 9999999999999763 3344444444322 21111111000 0111112257889999997777777777 8
Q ss_pred EEEEEEccCCCeeeeeeeeeee--CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 379 LIAIYDARRTPLISLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|++|+..+.+.. ..+. .+...+..+.|||+|+| ||.+.-+|.|.+|+..
T Consensus 211 ~Vkvy~r~~we~~-----f~Lr~~~~ss~~~~~~wsPnG~Y-----iAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 211 TVKVYSRKGWELQ-----FKLRDKLSSSKFSDLQWSPNGKY-----IAASTLDGQILVWNVD 262 (933)
T ss_pred eEEEEccCCceeh-----eeecccccccceEEEEEcCCCcE-----EeeeccCCcEEEEecc
Confidence 9999999986654 2333 24455899999999998 6777778999988865
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-18 Score=158.68 Aligned_cols=241 Identities=16% Similarity=0.186 Sum_probs=161.6
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.+||.+ +.....++. +...+.+.+|||||+.+++++. +..+.+|++..+. ...+
T Consensus 180 ~l~~~d~d---g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l---------------- 238 (429)
T PRK03629 180 ELRVSDYD---GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQV---------------- 238 (429)
T ss_pred eEEEEcCC---CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEc----------------
Confidence 57777764 333344433 5678999999999988887653 2568888886321 1111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD- 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d- 275 (445)
..+. ..+..++|+|||+.|+......| .|++||+.+++...+..+...+....|+|||+.|+..+.+
T Consensus 239 ------~~~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~ 308 (429)
T PRK03629 239 ------ASFP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA 308 (429)
T ss_pred ------cCCC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence 1122 23456899999999987644324 5889999988877777666778899999999999877654
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
+ .|+++|+.+++...+.........+.|+|||++|++.....+. ..+.+++. .......+......
T Consensus 309 g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~-~~I~~~dl-----------~~g~~~~Lt~~~~~ 376 (429)
T PRK03629 309 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ-QHIAKQDL-----------ATGGVQVLTDTFLD 376 (429)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC-ceEEEEEC-----------CCCCeEEeCCCCCC
Confidence 3 5666788887766665555556778999999999876543321 22322322 11112222222234
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....|+|||++|+.++.++.. ..+++++++.+... .+.+|.+.+...+|||-
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~---~~l~~~~~~G~~~~------~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCceECCCCCEEEEEEcCCCc---eEEEEEECCCCCeE------ECccCCCCcCCcccCCC
Confidence 578899999999999877543 56888898654433 45667788899999973
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-19 Score=160.02 Aligned_cols=265 Identities=17% Similarity=0.225 Sum_probs=171.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEE-EecCCcEEEEccCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPG 177 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~-~~~dg~i~vw~~~~~~ 177 (445)
-..|..+.|-|....|+++++|.++++||+....-.-.. +..+|.+.|.+++|.|+...+++ ++.||.|.|||+....
T Consensus 100 ~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 100 KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred cceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 347999999997788999999999999999753322222 34689999999999998766555 5568999999998443
Q ss_pred Cc--cccccccccccccccC--CCCCc-eEEEEeecccCCCceeE---EEECCCCCeEEEEEe-cCCeEEEEEccCCCce
Q 013338 178 NA--ASVRSGAASFLGALSR--GPGTR-WTLVDFLRSQNGEQITA---LSWGPDGRYLASASY-ESSSFTIWDVAQGLGT 248 (445)
Q Consensus 178 ~~--~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~g~v~vwd~~~~~~~ 248 (445)
.. ..+... ..+.... .+... -........+. ..|.+ +.+..|...||+++. | +.|+|||++.....
T Consensus 179 ~d~~e~~~~~---~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D-~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 179 VDALEEFDNR---IYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAAD-STIKVWDLRKNYTA 253 (720)
T ss_pred hhhHHHHhhh---hhccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCC-cceEEEeecccccc
Confidence 11 100000 0000000 00000 00111112222 33444 455578889999988 6 79999999976431
Q ss_pred e---------eecC---CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCC-----eeEEEECCCCCeEE
Q 013338 249 P---------IRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF-----VTGATWDPEGRMIL 311 (445)
Q Consensus 249 ~---------~~~~---~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~ 311 (445)
. +..+ .-.+.++.....|.+|.+.+.|+.|+.||+.+........+.+. -..-..+|++.+++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 1 1112 23567788888899998888899999999998766433322221 12235789999999
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++.. +...++|.+.. .......+.+|. .|++++|.|.. .-+++++.| .++++|++..+
T Consensus 334 SgSs-d~~ayiw~vs~------------~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD------~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSS-DEQAYIWVVSS------------PEAPPALLLGHTREVTTVRWLPSATTPVATCSDD------FRVKIWRLSNG 393 (720)
T ss_pred ccCC-CcceeeeeecC------------ccCChhhhhCcceEEEEEeeccccCCCceeeccC------cceEEEeccCc
Confidence 7643 34455555533 233455677888 89999998853 346667776 89999999643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=146.67 Aligned_cols=280 Identities=15% Similarity=0.224 Sum_probs=191.8
Q ss_pred CCeeEEEEcc-----CCCEEEEE---ECCCeEEEEEccCCCCccee--EEecCCCCCeeEEEECcCCCcEEEE-ecCCcE
Q 013338 100 VDLQGVSWHQ-----HKHIVAFI---SGSTQVIVRDYEDSEGKDAC--ILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGI 168 (445)
Q Consensus 100 ~~v~~~~~sp-----~g~~la~~---~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i 168 (445)
..|+...|.. +.++||.. +..|...+.-+. ..|+... -+..+|.++|..++|+|-....+++ +.|.+|
T Consensus 28 IrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~-k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v 106 (472)
T KOG0303|consen 28 IRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLV-KTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV 106 (472)
T ss_pred eeeeeeeccccccccCCceEEEEEecCCCcceeecccc-cccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence 3566666643 45666652 233333333332 2343222 2335899999999999976665555 557999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCc
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
.||.+...+....+. ..+..+.+|. ..|.-++|+|. .+.|++++.|+ +|.+|++.+++.
T Consensus 107 ~vW~IPe~~l~~~lt------------------epvv~L~gH~-rrVg~V~wHPtA~NVLlsag~Dn-~v~iWnv~tgea 166 (472)
T KOG0303|consen 107 MVWQIPENGLTRDLT------------------EPVVELYGHQ-RRVGLVQWHPTAPNVLLSAGSDN-TVSIWNVGTGEA 166 (472)
T ss_pred EEEECCCcccccCcc------------------cceEEEeecc-eeEEEEeecccchhhHhhccCCc-eEEEEeccCCce
Confidence 999998554443332 2467789997 89999999994 45788888895 999999999988
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cCCCC-CeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~-~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.....|...|+++.|+.||.+|++++.|..|+|||.++++.... ..|.+ ....+.|-.++. +++++-.....+.+-+
T Consensus 167 li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL 245 (472)
T KOG0303|consen 167 LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL 245 (472)
T ss_pred eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence 66667999999999999999999999999999999999988332 34443 345667888888 4444333455677778
Q ss_pred ccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN 405 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 405 (445)
|+...-. ......++....+|.---|.+|.+.++.++.+ |+.|+-|.+...... ...+.++. ..++
T Consensus 246 wdp~nl~-------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYyEit~d~P~-~hyln~f~-S~ep 311 (472)
T KOG0303|consen 246 WDPNNLE-------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYFEITNEPPF-VHYLNTFS-SKEP 311 (472)
T ss_pred cCccccc-------CcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEEEecCCCce-eEEecccc-cCCc
Confidence 8643100 11123344444477778899999999998876 499999999876643 22222232 2344
Q ss_pred CCceeEeecC
Q 013338 406 PKPVAFSFHD 415 (445)
Q Consensus 406 v~~v~~spdg 415 (445)
-..+.|-|..
T Consensus 312 QRG~g~mPKR 321 (472)
T KOG0303|consen 312 QRGMGFMPKR 321 (472)
T ss_pred cccccccccc
Confidence 5667776653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=146.10 Aligned_cols=296 Identities=15% Similarity=0.223 Sum_probs=192.4
Q ss_pred cCCeeEEEEcc----CC-CEEEEEECCCeEEEEEccCCCC-cceeEEec-CCCCCeeEEEECcCC----CcEEEEecCCc
Q 013338 99 EVDLQGVSWHQ----HK-HIVAFISGSTQVIVRDYEDSEG-KDACILTS-DSQRDVKVLEWRPNG----GRSLSVGCKGG 167 (445)
Q Consensus 99 ~~~v~~~~~sp----~g-~~la~~~~d~~i~iw~~~~~~~-~~~~~~~~-~~~~~v~~l~~spd~----~~l~~~~~dg~ 167 (445)
+.+|..++|++ +. ..+|+ .....+.||......+ ..+..... .|....+.++|+-|. ..++++|.-|.
T Consensus 38 ~~~I~gv~fN~~~~~~e~~vfat-vG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~Gv 116 (385)
T KOG1034|consen 38 NKPIFGVAFNSFLGCDEPQVFAT-VGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGV 116 (385)
T ss_pred CCccceeeeehhcCCCCCceEEE-eCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeE
Confidence 34678888874 23 34444 4566788888763221 12222222 477888999996542 34666777799
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
|+|.|+... .+...+.+|. ..|+.+.+.|+ .+++++++.|. +|++|++++..
T Consensus 117 IrVid~~~~-------------------------~~~~~~~ghG-~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~~ 169 (385)
T KOG1034|consen 117 IRVIDVVSG-------------------------QCSKNYRGHG-GSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTDV 169 (385)
T ss_pred EEEEecchh-------------------------hhccceeccC-ccchhhhcCCCCCcEEEEecCCc-eEEEEeccCCe
Confidence 999999822 3455578885 89999999995 47889999995 99999999999
Q ss_pred ceeeec----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-----------------------------cccC
Q 013338 247 GTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----------------------------PWSS 293 (445)
Q Consensus 247 ~~~~~~----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-----------------------------~~~~ 293 (445)
+..+++ |...|.++.|+++|.+|++++.|.++++|++...+.. ....
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 887664 6789999999999999999999999999999843320 0012
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc--cccccccccCCC---ccceEEeCCCCCEEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPDIVSLTGSQ---GIEKIAWDASGERLAVS 368 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~ 368 (445)
|...|.|+.|- |.+++ +-+.++.+..|+......... ...+. ....+.++.-.. +....+|+|-+++||.|
T Consensus 250 HrnyVDCvrw~--gd~il-SkscenaI~~w~pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFIL-SKSCENAIVCWKPGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred ccchHHHHHHH--hhhee-ecccCceEEEEecchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 44455555553 45555 333334444444321111100 00010 111233333333 34455677889999999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
... |.|++||++..+......+ .-..-+..|...+||.||.+ |....++|.|..|+..
T Consensus 326 nq~------g~v~vwdL~~~ep~~~ttl-~~s~~~~tVRQ~sfS~dgs~-----lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 326 NQS------GKVYVWDLDNNEPPKCTTL-THSKSGSTVRQTSFSRDGSI-----LVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCC------CcEEEEECCCCCCccCceE-EeccccceeeeeeecccCcE-----EEEEeCCCcEEEEEee
Confidence 887 8999999997655321111 11112456899999999875 4455589999888754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=141.98 Aligned_cols=247 Identities=11% Similarity=0.130 Sum_probs=175.2
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
.-...|.++.|+|.++.|++++.||.+++|++........ + .| ..++.+++|.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-------------------------~-~~-~~plL~c~F~ 63 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-------------------------F-KH-GAPLLDCAFA 63 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-------------------------e-ec-CCceeeeecc
Confidence 3456799999999999999999999999999984321111 1 12 4799999998
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA 301 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 301 (445)
++ ..+++|+.| |.|+.+|++++....+..|...+.++.+++-...+++|+.|++|++||.+.....-.......|.++
T Consensus 64 d~-~~~~~G~~d-g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 64 DE-STIVTGGLD-GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred CC-ceEEEeccC-ceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE
Confidence 74 678999999 7999999999999999999999999999998889999999999999999985544334455578877
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
..+ +..|++++.+ ..+..+++..... .....-..-. .+.++++-|++.-.+++|-+ |+|
T Consensus 142 ~v~--g~~LvVg~~~-r~v~iyDLRn~~~-----------~~q~reS~lkyqtR~v~~~pn~eGy~~sSie------GRV 201 (323)
T KOG1036|consen 142 DVS--GNRLVVGTSD-RKVLIYDLRNLDE-----------PFQRRESSLKYQTRCVALVPNGEGYVVSSIE------GRV 201 (323)
T ss_pred ecc--CCEEEEeecC-ceEEEEEcccccc-----------hhhhccccceeEEEEEEEecCCCceEEEeec------ceE
Confidence 765 5566665433 3344444433211 1111111112 58999999988888888888 777
Q ss_pred EEEEccCC-----CeeeeeeeeeeeC---CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 381 AIYDARRT-----PLISLSLIGFIRG---PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 381 ~vwd~~~~-----~~~~~~~~~~~~~---~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
.+=.++.. +.....+.+.... -..+|++++|+|-.+ .++-|-++|.|.+|++.-++.
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-----tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-----TFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-----eEEecCCCceEEEccCcchhh
Confidence 77555433 1111111111111 124799999999743 477888999999998865543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=149.46 Aligned_cols=300 Identities=13% Similarity=0.157 Sum_probs=197.4
Q ss_pred eeEEEEccCCCEEEEEECC---CeEEEEEccCCCCcceeEEecCC----CCCeeEEEECc-------CCCcEEEEecCCc
Q 013338 102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDS----QRDVKVLEWRP-------NGGRSLSVGCKGG 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~l~~sp-------d~~~l~~~~~dg~ 167 (445)
...+..-|+..+|+++-.. ..+.+|-.+... ..+. ..| .....|++|.- .|++++.+..+..
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlY---vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~ 203 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLY---VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE 203 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCC-ccee---EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCce
Confidence 4566777877777776533 345555554222 1111 112 23345677732 2345666667899
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCce-EEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW-TLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
|.|||+............. +....-...- +.-....+|+ ..|.+++|+.. ...||+||.|. +|++||+.++
T Consensus 204 IeIWDLDI~d~v~P~~~LG-----s~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~~nVLaSgsaD~-TV~lWD~~~g 276 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLG-----SKASKKKKKKGKRSNSASGHT-DAVLALSWNRNFRNVLASGSADK-TVKLWDVDTG 276 (463)
T ss_pred eEEeccccccccccceeec-----hhhhhhhhhhcccccccccch-HHHHHHHhccccceeEEecCCCc-eEEEEEcCCC
Confidence 9999998433322211100 0000000000 0001123454 78888999874 45688899995 9999999999
Q ss_pred Cceeeec-CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 246 LGTPIRR-GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 246 ~~~~~~~-~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
++..... |...|.+++|+|. ..+|++|+.|++|.+.|.+.... .......+.|..++|.|.....+.++..++.++-
T Consensus 277 ~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~ 356 (463)
T KOG0270|consen 277 KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYY 356 (463)
T ss_pred CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEe
Confidence 9977665 6789999999996 67889999999999999996333 2333456789999999999888888777777777
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
+++.. .++++.+++.|. +|.++++++.-. +|++++.+ +.|++|++...... ...
T Consensus 357 ~D~R~------------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vklw~~~~~~~~------~v~ 412 (463)
T KOG0270|consen 357 FDIRN------------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKLWKFDVDSPK------SVK 412 (463)
T ss_pred eecCC------------CCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEEEeecCCCCc------ccc
Confidence 77654 457888999999 999999998664 56677666 99999998743221 111
Q ss_pred CCC---CCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 401 GPG---DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 401 ~~~---~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.|. +...|.++.|+-. .+|++|-+++.+.++++.-.
T Consensus 413 ~~~~~~~rl~c~~~~~~~a----~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDVA----FTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cccccccceeecccCCCcc----eEEEecCccceEEEeecccC
Confidence 222 1234555556543 47999999998899887643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=175.10 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=177.7
Q ss_pred cCCeeEEEEccCCCE----EEEEECCCeEEEEEccCC--CCcc-eeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEE
Q 013338 99 EVDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS--EGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICI 170 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~----la~~~~d~~i~iw~~~~~--~~~~-~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~v 170 (445)
....+.++|.+.|.. ||.|..||.|.+|+...- ..+. .......|.+.|..+.|++..+.++++| .+|.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 346789999998876 888889999999998642 2211 1122246999999999999977566555 5699999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
||+.....+....+ ....+.|.+++|+..-.. |++++.+ |.+.|||++..+.+.
T Consensus 144 WDlnn~~tP~~~~~------------------------~~~~~eI~~lsWNrkvqhILAS~s~s-g~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGS------------------------QAPPSEIKCLSWNRKVSHILASGSPS-GRAVIWDLRKKKPII 198 (1049)
T ss_pred eccCCcCCCCCCCC------------------------CCCcccceEeccchhhhHHhhccCCC-CCceeccccCCCccc
Confidence 99985333322211 011378999999985544 5666666 799999999876543
Q ss_pred -eecC--CCCeeEEEEcCCC-CEEEEEecCC---eEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 250 -IRRG--FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 250 -~~~~--~~~v~~~~~sp~g-~~l~~~~~dg---~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
+..+ ...+..++|+|+. ..|++++.|. .|.+||+|.-.. +.+..|...|.++.|++.+..++.++..|+++
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~i 278 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRI 278 (1049)
T ss_pred ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCe
Confidence 3333 2457899999984 4577777654 799999986554 56779999999999999885555555555544
Q ss_pred EEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCC
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
..|. .. +++.+..+.... ++..+.|+|... .+++++-+ |.|-||.+.+..
T Consensus 279 i~wN---~~----------tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd------gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 279 ICWN---PN----------TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD------GKISIYSLQGTD 330 (1049)
T ss_pred eEec---CC----------CceEeeecCCCCcceeeeeecCCCcchhhhheec------cceeeeeeecCC
Confidence 4444 32 555666776655 899999999876 67777777 999999997644
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=160.64 Aligned_cols=145 Identities=20% Similarity=0.328 Sum_probs=105.6
Q ss_pred CeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc--------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 256 GLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 256 ~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.|+++.|.| |...|++++.||.|++|.+..+.. ..+..|...|+++.|+|-..-++...+. +..+++|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~Ti~lW 705 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DSTIELW 705 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cceeeee
Confidence 478899998 677899999999999999876543 2356889999999999965544433333 3445555
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GD 404 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~ 404 (445)
+.. +......+.+|. .|.+++|||||+.+|+.+.| |+|+||+-++++.. +..-++. +.
T Consensus 706 Dl~----------~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD------g~~rVy~Prs~e~p----v~Eg~gpvgt 765 (1012)
T KOG1445|consen 706 DLA----------NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD------GTLRVYEPRSREQP----VYEGKGPVGT 765 (1012)
T ss_pred ehh----------hhhhhheeccCcCceeEEEECCCCcceeeeecC------ceEEEeCCCCCCCc----cccCCCCccC
Confidence 432 455666788999 89999999999999999999 99999999876543 2222221 12
Q ss_pred CCCceeEeecCCCCCCCeEEEEe
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
.-..+.|.=||++ ++.+|+
T Consensus 766 RgARi~wacdgr~----viv~Gf 784 (1012)
T KOG1445|consen 766 RGARILWACDGRI----VIVVGF 784 (1012)
T ss_pred cceeEEEEecCcE----EEEecc
Confidence 2346788888886 455554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-18 Score=154.66 Aligned_cols=244 Identities=16% Similarity=0.208 Sum_probs=183.8
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
...+|.+|||+.+.+.|+++-.+|.|.+|++. ..|.+...+.++.+..|.+++|++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~------------------------~~w~~~~vi~g~~drsIE~L~W~e 79 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS------------------------NNWFLEPVIHGPEDRSIESLAWAE 79 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccC------------------------CCceeeEEEecCCCCceeeEEEcc
Confidence 56789999999998887777789999999997 256778888888889999999995
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCe
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFV 298 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v 298 (445)
+..|++.+.+ |.|.-||+.+++..... ...+.|++++.+|.+..++.|+.||.++.++...++. ..+....+.+
T Consensus 80 -~~RLFS~g~s-g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 80 -GGRLFSSGLS-GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred -CCeEEeecCC-ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 5567788888 79999999998876544 4578999999999999999999999888888888776 3344667899
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.+++|+|++..|+.|+ .++.+++|+.......++.. ..+..+.. .. -|+++.|-.++ .|++|-+.
T Consensus 158 Lslsw~~~~~~i~~Gs----~Dg~Iriwd~~~~~t~~~~~---~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~----- 224 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGS----IDGVIRIWDVKSGQTLHIIT---MQLDRLSKREPTIVWSVLFLRDS-TIASGDSA----- 224 (691)
T ss_pred EEEEecCCccEEEecc----cCceEEEEEcCCCceEEEee---ecccccccCCceEEEEEEEeecC-cEEEecCC-----
Confidence 9999999999999773 35777777765433333111 11112222 22 47788877666 46777555
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|+|.+||...+.++ +....|...|.+++-++++.+ +-++-=+++|..|.
T Consensus 225 -G~V~FWd~~~gTLi-----qS~~~h~adVl~Lav~~~~d~-----vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 225 -GTVTFWDSIFGTLI-----QSHSCHDADVLALAVADNEDR-----VFSAGVDPKIIQYS 273 (691)
T ss_pred -ceEEEEcccCcchh-----hhhhhhhcceeEEEEcCCCCe-----EEEccCCCceEEEE
Confidence 99999999987765 467778999999999998764 22333355554444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=141.87 Aligned_cols=257 Identities=16% Similarity=0.286 Sum_probs=172.8
Q ss_pred CCeeEEEEccCC-CEEEEEECC-------CeEEEEEccCCCCc-------ceeEEecCCCCCeeEEEECcCCCcEEEEec
Q 013338 100 VDLQGVSWHQHK-HIVAFISGS-------TQVIVRDYEDSEGK-------DACILTSDSQRDVKVLEWRPNGGRSLSVGC 164 (445)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~d-------~~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~l~~spd~~~l~~~~~ 164 (445)
.+|+.++-+|.. +.|+++..+ ..+.||.+...-+. .+..+...+-+.|.|+.|.|++.++++..
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~- 142 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD- 142 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-
Confidence 468888888855 445554321 24689998654332 22233334566899999999977776655
Q ss_pred CCcEEEEccCCCCCc-cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEE
Q 013338 165 KGGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWD 241 (445)
Q Consensus 165 dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd 241 (445)
|..|.+|++...... ..+... .-..+ ....++-+|+| +|+.+++.+ | +++..||
T Consensus 143 dn~i~l~~l~ess~~vaev~ss--------------------~s~e~-~~~ftsg~WspHHdgnqv~tt~-d-~tl~~~D 199 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSS--------------------ESAEM-RHSFTSGAWSPHHDGNQVATTS-D-STLQFWD 199 (370)
T ss_pred cCceEEEEcccCcchheeeccc--------------------ccccc-cceecccccCCCCccceEEEeC-C-CcEEEEE
Confidence 889999999855442 221111 01112 25678889998 788888875 5 5999999
Q ss_pred ccCCCcee--eecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 242 VAQGLGTP--IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 242 ~~~~~~~~--~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
+++..... ...|...|.++.|+|+.+ +|++|+.||.|+|||.+..+. ..+.+|...+.++.|+|....|+.+++.
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 99876633 235778899999999855 578999999999999998765 6778999999999999987766655555
Q ss_pred CceEEEEEeccCC--CC--------------ccccccCccccccccccCCC-ccceEEeCCCCCEEE-EEEcCCCcccce
Q 013338 317 SLTLGSIHFASKP--PS--------------LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKG 378 (445)
Q Consensus 317 ~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~-~~s~d~~d~~d~ 378 (445)
+..+......... +. ...+..++....+.++..|. .|++++||.-..+++ +-|.| |
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD------G 353 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD------G 353 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC------c
Confidence 5544443332211 00 00011122334466788888 999999998777655 44444 8
Q ss_pred EEEEEEcc
Q 013338 379 LIAIYDAR 386 (445)
Q Consensus 379 ~i~vwd~~ 386 (445)
++.|=.+.
T Consensus 354 RviIs~V~ 361 (370)
T KOG1007|consen 354 RVIISSVP 361 (370)
T ss_pred eEEeecCC
Confidence 88876665
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-18 Score=159.54 Aligned_cols=234 Identities=19% Similarity=0.239 Sum_probs=152.5
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
+..|.+||.+ +.....+. .+...+.+++|+|||+++++++.+ ..|.+||+..+..
T Consensus 183 ~~~i~i~d~d---g~~~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------------------ 240 (429)
T PRK01742 183 PYEVRVADYD---GFNQFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------------------ 240 (429)
T ss_pred eEEEEEECCC---CCCceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------------------
Confidence 4678888875 33334443 477789999999999999887754 4699999873211
Q ss_pred CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEE--EEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI--WDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK- 273 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~v--wd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~- 273 (445)
..+..+.+ ....++|+|||+.|++++..+|.+.| ||+.++....+..+...+..+.|+|||+.|+.++
T Consensus 241 -----~~l~~~~g----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 241 -----KVVASFRG----HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred -----EEEecCCC----ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 11222222 23468999999999887643366555 5666777677777777788999999999877655
Q ss_pred cCCeEEEEeCCC--CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 274 FDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 274 ~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
.++...||+++. +....+ .+.. ..+.|+|+|++|++... ..+..+++.. +.. ..+....
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~-------------g~~-~~lt~~~ 372 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING--DNVVKQDLTS-------------GST-EVLSSTF 372 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC--CCEEEEECCC-------------CCe-EEecCCC
Confidence 567777776643 333333 3332 45789999999987644 2233333321 111 1111111
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....+.|+|||++|++++.+ +.+.+|++. +++.. ..+.+|.+.+..++|||-
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~------g~~~~l~~~~~~G~~~-----~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQ------GLGKVLQLVSADGRFK-----ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCceECCCCCEEEEEEcC------CCceEEEEEECCCCce-----EEccCCCCCCCCcccCCC
Confidence 23567899999999999877 555666542 33332 356678888999999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=156.23 Aligned_cols=254 Identities=18% Similarity=0.270 Sum_probs=173.5
Q ss_pred EEEEccCCCEEEE--EECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCC
Q 013338 104 GVSWHQHKHIVAF--ISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 104 ~~~~sp~g~~la~--~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
|--|+.+..++|+ ++..|.|.||++... |+...... .-....|+.+.|.| |..+|++++.||.|++|.+...+.
T Consensus 584 snGfcan~~rvAVPL~g~gG~iai~el~~P-GrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 584 SNGFCANNKRVAVPLAGSGGVIAIYELNEP-GRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred cCceeeccceEEEEecCCCceEEEEEcCCC-CCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 4456666777775 456889999999753 33222111 12566799999999 445677777889999999997665
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~ 256 (445)
.....+ ....+..|. ..|+++.|+| -...|+++++|. +|++||+.+.+. ..+.+|.+.
T Consensus 663 ~e~~~t------------------Pe~~lt~h~-eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l~gHtdq 722 (1012)
T KOG1445|consen 663 PENEMT------------------PEKILTIHG-EKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRLVGHTDQ 722 (1012)
T ss_pred CcccCC------------------cceeeeccc-ceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhheeccCcCc
Confidence 544333 245577775 8999999999 567899999995 999999998876 567789999
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC---CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
|.+++|||+|+.+++.+.||+|++|+.++++.....+ ....--.+.|.-+|+++++.+-+....+.+.+++...
T Consensus 723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~--- 799 (1012)
T KOG1445|consen 723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT--- 799 (1012)
T ss_pred eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh---
Confidence 9999999999999999999999999999876533221 1223346788889999887654444445555544321
Q ss_pred ccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 334 AHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+....+.+..-.. .+.--.+.+|...|+..+.+ |..|++|.+-.....
T Consensus 800 -----l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 800 -----LDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVIYESPY 849 (1012)
T ss_pred -----ccCCcceeeeecccCccccccccCCCceEEEecCC-----CceEEEEEecCCCce
Confidence 0111221111111 22223456677766665544 289999998765544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-18 Score=147.81 Aligned_cols=264 Identities=16% Similarity=0.171 Sum_probs=186.2
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
..+.+||+.+ |.....+..+....-.++..-.. .+++++... ..+.+|.+.........
T Consensus 18 ~~~~~~dl~T--Gt~~~~ykg~~~a~~~sl~~l~~-~yllsaq~~rp~l~vw~i~k~~~~~q~----------------- 77 (476)
T KOG0646|consen 18 INCIVWDLRT--GTSLLQYKGSYLAQAASLTALNN-EYLLSAQLKRPLLHVWEILKKDQVVQY----------------- 77 (476)
T ss_pred cceeEEecCC--CceeEEecCcccccchhhhhhch-hheeeecccCccccccccCchhhhhhh-----------------
Confidence 3488999854 55444443221112222222111 466665543 68899998733322210
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeE
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v 278 (445)
.. -++.|.+++-+|+|.+|+.|+-. |.+++|.+.+|.... +.+|-..|+++.|+-||.+|++|+.||.|
T Consensus 78 -------~v--~Pg~v~al~s~n~G~~l~ag~i~-g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 78 -------IV--LPGPVHALASSNLGYFLLAGTIS-GNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred -------cc--cccceeeeecCCCceEEEeeccc-CcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 00 13789999999999999888777 799999999998855 45688999999999999999999999999
Q ss_pred EEEeCCC-------CCc---ccccCCCCCeeEEEECCC--CCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccc
Q 013338 279 YLWETNT-------WTS---EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 279 ~iwd~~~-------~~~---~~~~~~~~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.+|.+-. ... ..+..|.-+|+.+...+. ...++++ +. +..+++|+.. .+..+.+
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~---D~t~k~wdlS----------~g~LLlt 213 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SE---DRTIKLWDLS----------LGVLLLT 213 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cC---CceEEEEEec----------cceeeEE
Confidence 9998642 111 345588889999887765 3456655 23 4555555432 3344555
Q ss_pred ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC-----------eeeeeeeeeeeCCCC--CCCceeEee
Q 013338 347 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP-----------LISLSLIGFIRGPGD--NPKPVAFSF 413 (445)
Q Consensus 347 ~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~--~v~~v~~sp 413 (445)
+.-...+.+++.+|-++.+++|+++ |.|.+.++..-. ......+..+.||.+ .|++++.+-
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~------G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEE------GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCc------ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 5555589999999999999999988 899988875322 112334556778887 899999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
||. +|..|-.+|+|++|++.-
T Consensus 288 Dgt-----lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 288 DGT-----LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred Ccc-----EEEeeCCCCCEEEEecch
Confidence 876 699999999999999864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=151.08 Aligned_cols=239 Identities=17% Similarity=0.246 Sum_probs=175.3
Q ss_pred EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
.+..+|.+.|.+|+..|.|..|++++.||+|+||.+.++ +|++.+.- .+.|.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-------------------------Rcvr~~~~--d~~I~~ 446 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-------------------------RCVRTVQF--DSEIRS 446 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-------------------------eEEEEEee--cceeEE
Confidence 445689999999999999888888888999999999833 34444443 268999
Q ss_pred EEECCCCCe--EEEEEecCCeEEEEEccCC------------------------------------C--ceeeecCCCCe
Q 013338 218 LSWGPDGRY--LASASYESSSFTIWDVAQG------------------------------------L--GTPIRRGFGGL 257 (445)
Q Consensus 218 ~~~sp~~~~--l~~~~~d~g~v~vwd~~~~------------------------------------~--~~~~~~~~~~v 257 (445)
++|+|.+.. ||++- . +.+.|.+..-| + ......|...|
T Consensus 447 vaw~P~~~~~vLAvA~-~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 447 VAWNPLSDLCVLAVAV-G-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEecCCCCceeEEEEe-c-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 999997654 33332 2 13333322111 0 11234567789
Q ss_pred eEEEEcCCCCEEEEEecC---CeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
..+.|+..|.||++...+ ..|.|+++...+. ..+....+.+.++.|+|...+++++.... +.++++.
T Consensus 525 ~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~------- 595 (733)
T KOG0650|consen 525 RQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLS------- 595 (733)
T ss_pred ceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehh-------
Confidence 999999999999987664 4799999987665 45556778899999999999999886533 3334332
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
....++.+.... .|.+++.+|.|..|+.++.| +.+..||+.-. ..+.+.++-|...+++|+|+
T Consensus 596 ------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d------~k~~WfDldls----skPyk~lr~H~~avr~Va~H 659 (733)
T KOG0650|consen 596 ------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYD------KKMCWFDLDLS----SKPYKTLRLHEKAVRSVAFH 659 (733)
T ss_pred ------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC------CeeEEEEcccC----cchhHHhhhhhhhhhhhhhc
Confidence 333344444444 89999999999999999888 89999999853 33456788899999999998
Q ss_pred ecCCCCCCCeEEEEecCeeeEee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
+.- ++++.|..+|.+.+|
T Consensus 660 ~ry-----PLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 660 KRY-----PLFASGSDDGTVIVF 677 (733)
T ss_pred ccc-----ceeeeecCCCcEEEE
Confidence 653 579999999998765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-17 Score=152.98 Aligned_cols=240 Identities=18% Similarity=0.216 Sum_probs=157.8
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.+||.+ +.....++ .+...+.+.+|+|||+.+++++.+ ..|.+|++..+.. ..
T Consensus 185 ~l~i~D~~---g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~----------------- 242 (433)
T PRK04922 185 ALQVADSD---GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL----------------- 242 (433)
T ss_pred EEEEECCC---CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE-----------------
Confidence 57777763 44344443 366789999999999888888743 4688899863211 11
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d 275 (445)
+... .+...+++|+|||+.|+.....+| .|++||+.+++...+..+......++|+|||++|+.++. +
T Consensus 243 --------l~~~-~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~ 313 (433)
T PRK04922 243 --------VASF-RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG 313 (433)
T ss_pred --------eccC-CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence 1111 134457899999998875533223 699999998887777666666678999999999887764 3
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
+ .|+++|+.+++...+.........++|+|+|++|+.....+. ...+.+++.. ......+......
T Consensus 314 g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~-~~~I~v~d~~-----------~g~~~~Lt~~~~~ 381 (433)
T PRK04922 314 GRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG-QYRIAVMDLS-----------TGSVRTLTPGSLD 381 (433)
T ss_pred CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-ceeEEEEECC-----------CCCeEECCCCCCC
Confidence 3 478888888776555544445567899999999987654322 2233333321 1112222222234
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..+.|+|||++|+..+.++.. +.|+++++..+... .+..+.+.+..++|||
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~---~~L~~~~~~g~~~~------~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGR---GVLAAVSTDGRVRQ------RLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------EcccCCCCCCCCccCC
Confidence 567999999999888765433 67888988654322 3444556678888887
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-16 Score=149.21 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=158.5
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.++|.+ +.....++ .+...+.+.+|+|||+.|++++. +..|.+|++..+.. .
T Consensus 183 ~l~~~d~d---g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~------------------ 239 (435)
T PRK05137 183 RLAIMDQD---GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-E------------------ 239 (435)
T ss_pred EEEEECCC---CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-E------------------
Confidence 56666653 44444443 47778999999999998888764 36799999873211 1
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d 275 (445)
.+..+ .+.+...+|+|||+.|+.....+| .|++||+.++....+..+........|+|||++|+..+. +
T Consensus 240 -------~l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 240 -------LVGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred -------EeecC-CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 12222 246678899999998875543223 477889988887777777667788999999999987764 3
Q ss_pred --CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 --GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
..|+++|+.+++...+......+..+.|+|+|++|+......+ ...+.+++. .......+.....+
T Consensus 312 g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~-----------~~~~~~~lt~~~~~ 379 (435)
T PRK05137 312 GSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKP-----------DGSGERILTSGFLV 379 (435)
T ss_pred CCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-ceEEEEEEC-----------CCCceEeccCCCCC
Confidence 3789999988877666555556777899999999987654322 122222222 11112222221246
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
..+.|+|||++|+..+.+.+......++++|+..+... .+.. ...+...+|+|-
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~------~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER------EVPT-PGDASDPAWSPL 433 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE------EccC-CCCccCcccCCC
Confidence 78899999999988765422100136888888765443 2222 334677888873
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-18 Score=149.62 Aligned_cols=257 Identities=13% Similarity=0.206 Sum_probs=176.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEE-EccCCCCcceeEEecCCCCCeeEEEEC-------cCCCcEEEEecCCcEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVR-DYEDSEGKDACILTSDSQRDVKVLEWR-------PNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw-~~~~~~~~~~~~~~~~~~~~v~~l~~s-------pd~~~l~~~~~dg~i~vw~ 172 (445)
.|.|+.|+.+...+.++ .|..+.+| ++.. +...+.... ...-.+.+..- .....++.++.||.+.+.+
T Consensus 16 ~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~-~s~~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFVS-DDHQIFKWSDVSR-DSVEVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred eEEeecccccceEEEec-cCceEEEeecccc-hhhhhhhCC--cccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 35689999888776654 55555555 4432 211111111 11111111111 1224588888999998877
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~ 252 (445)
-.. +..+.+..|. +.+.+-.|+|||.-|++++.| |.|++|.-...-...+..
T Consensus 92 k~~--------------------------rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GED-G~iKiWSrsGMLRStl~Q 143 (737)
T KOG1524|consen 92 KSA--------------------------RVERSISAHA-AAISSGRWSPDGAGLLTAGED-GVIKIWSRSGMLRSTVVQ 143 (737)
T ss_pred ccc--------------------------hhhhhhhhhh-hhhhhcccCCCCceeeeecCC-ceEEEEeccchHHHHHhh
Confidence 541 1223356675 899999999999999999999 899999965443344555
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
....|+|++|.|+.+.++.+. .+.+.|=.+.... ..++..|.+-|.++.|++....++++ +.+..+++|+.
T Consensus 144 ~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg----GED~kfKvWD~--- 215 (737)
T KOG1524|consen 144 NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG----GEDFRFKIWDA--- 215 (737)
T ss_pred cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec----CCceeEEeecc---
Confidence 678999999999988877765 4466666665443 36788999999999999999999987 45678888875
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCcee
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 410 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 410 (445)
.+..+.+-..|. +|++++|+|+ +.++.+|. +++++=..+ .+.|..++
T Consensus 216 --------~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-------nt~R~~~p~----------------~GSifnls 263 (737)
T KOG1524|consen 216 --------QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-------NTARFSSPR----------------VGSIFNLS 263 (737)
T ss_pred --------cCcccccCChhccceeeeeeccc-cceeeeee-------eeeeecCCC----------------ccceEEEE
Confidence 344455555677 8999999999 66666665 466622222 35677999
Q ss_pred EeecCCCCCCCeEEEEecCeeeEe
Q 013338 411 FSFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 411 ~spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
||+||.. +++|.+.|.+.+
T Consensus 264 WS~DGTQ-----~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 264 WSADGTQ-----ATCGTSTGQLIV 282 (737)
T ss_pred EcCCCce-----eeccccCceEEE
Confidence 9999875 778888888764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-18 Score=154.03 Aligned_cols=231 Identities=17% Similarity=0.231 Sum_probs=171.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.-|+|++|+.||+++|+|+.|..|.||+-.. + -.+...|.+.|.|+.|+|-...|+++ +-...-+|....+...
T Consensus 54 DtVycVAys~dGkrFASG~aDK~VI~W~~kl-E----G~LkYSH~D~IQCMsFNP~~h~LasC-sLsdFglWS~~qK~V~ 127 (1081)
T KOG1538|consen 54 DTVYCVAYAKDGKRFASGSADKSVIIWTSKL-E----GILKYSHNDAIQCMSFNPITHQLASC-SLSDFGLWSPEQKSVS 127 (1081)
T ss_pred ceEEEEEEccCCceeccCCCceeEEEecccc-c----ceeeeccCCeeeEeecCchHHHhhhc-chhhccccChhhhhHH
Confidence 3599999999999999999999999998532 2 33444699999999999985555544 4445678987622111
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~~~ 256 (445)
.. ....++.+++|..||++++.|-.+ |+|.+-+-...+...+.. ....
T Consensus 128 K~----------------------------kss~R~~~CsWtnDGqylalG~~n-GTIsiRNk~gEek~~I~Rpgg~Nsp 178 (1081)
T KOG1538|consen 128 KH----------------------------KSSSRIICCSWTNDGQYLALGMFN-GTISIRNKNGEEKVKIERPGGSNSP 178 (1081)
T ss_pred hh----------------------------hhheeEEEeeecCCCcEEEEeccC-ceEEeecCCCCcceEEeCCCCCCCC
Confidence 10 112688999999999999999988 899998655444444443 4678
Q ss_pred eeEEEEcCCC-----CEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 257 LSILKWSPTG-----DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 257 v~~~~~sp~g-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
|++++|+|.. ..+++.....++.+|.+......+-...+-...|+.+.++|.+++.|+. ++.+.+...
T Consensus 179 iwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs----dk~L~~fTR--- 251 (1081)
T KOG1538|consen 179 IWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGS----DKQLSLFTR--- 251 (1081)
T ss_pred ceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccC----CCceEEEee---
Confidence 9999999963 4678888888999998877555444445556678999999999998844 344444322
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.+-.+.++.... +|++++..|++++++.|..| |+|..|++.
T Consensus 252 --------~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD------GTiACyNl~ 293 (1081)
T KOG1538|consen 252 --------DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD------GTIACYNLI 293 (1081)
T ss_pred --------cCeEEeeccccceeEEEEEEccCCceEEEEEcc------CeeehhhhH
Confidence 333344444444 89999999999999999998 999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=143.01 Aligned_cols=208 Identities=16% Similarity=0.226 Sum_probs=154.4
Q ss_pred cCCCCCeeEEEECcCCC-cEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 141 SDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~-~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
.-+.++|++++|+|... .++++|.. |.|-+||+...+... .-+..+..|. .+|.++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------------d~v~~f~~hs-~~Vs~l 240 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------------DGVYLFTPHS-GPVSGL 240 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------------CceEEeccCC-ccccce
Confidence 34789999999999866 66666654 999999996222111 1123355564 899999
Q ss_pred EECC-CCCeEEEEEecCCeEEEEEccCCCceeeec---CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--cccc
Q 013338 219 SWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS 292 (445)
Q Consensus 219 ~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~ 292 (445)
.|+| +-..+++.++| |+|++-|+++.....+.. ....+.++.|+.+...++.+..=|.+.+||+++... ..+.
T Consensus 241 ~F~P~n~s~i~ssSyD-GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~ 319 (498)
T KOG4328|consen 241 KFSPANTSQIYSSSYD-GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR 319 (498)
T ss_pred EecCCChhheeeeccC-ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence 9999 55678899999 899999999875543332 345677888888888888888778999999998765 5566
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
-|...|.+++++|...++++.++.+.+..+|++...... ..++-....|. .|.++.|||++-.|++.+.|
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K---------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK---------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCC---------CCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 788899999999999888877666666666665443211 11122333566 89999999998889998887
Q ss_pred CCcccceEEEEEEcc
Q 013338 372 GDDIYKGLIAIYDAR 386 (445)
Q Consensus 372 ~~d~~d~~i~vwd~~ 386 (445)
..|+|||..
T Consensus 391 ------~~IRv~dss 399 (498)
T KOG4328|consen 391 ------NEIRVFDSS 399 (498)
T ss_pred ------CceEEeecc
Confidence 899999984
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-16 Score=147.37 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=153.2
Q ss_pred EEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCcccccccccc
Q 013338 113 IVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 113 ~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
.||..+. .+.-.||-.+. ++.....+. .+...+.+.+|+|||+.+++++.+ ..|.+||+..+.. ..
T Consensus 165 ~iayv~~~~~~~~L~~~D~-dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~------- 234 (427)
T PRK02889 165 RIAYVIKTGNRYQLQISDA-DGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV------- 234 (427)
T ss_pred EEEEEEccCCccEEEEECC-CCCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE-------
Confidence 4554443 23334444432 344444443 467789999999999888887753 4588999873321 11
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE--EccCCCceeeecCCCCeeEEEEcCCC
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW--DVAQGLGTPIRRGFGGLSILKWSPTG 266 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw--d~~~~~~~~~~~~~~~v~~~~~sp~g 266 (445)
+... ...+...+|+|||+.|+.....+|...+| |+.++....+..+........|+|||
T Consensus 235 ------------------l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 235 ------------------VANF-KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred ------------------eecC-CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCC
Confidence 1111 13456889999999987654333665555 55556656665555566788999999
Q ss_pred CEEEEEec-CCe--EEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc
Q 013338 267 DYFFAAKF-DGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD 343 (445)
Q Consensus 267 ~~l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (445)
++|+..+. ++. |+++++.+++...+..........+|+|||++|+......+ ...+.+++.. ...
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g-~~~I~v~d~~-----------~g~ 363 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG-AFKLYVQDLA-----------TGQ 363 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-cEEEEEEECC-----------CCC
Confidence 99886654 344 44455556655444333344456899999999987654332 2233433321 111
Q ss_pred cccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 344 IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 344 ~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...+........+.|+|||++|+.++.++.. ..+.+.++.. ... ..+..+.+.+...+|||-
T Consensus 364 ~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~~g-~~~-----~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VTALTDTTRDESPSFAPNGRYILYATQQGGR---SVLAAVSSDG-RIK-----QRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEccCCCCccCceECCCCCEEEEEEecCCC---EEEEEEECCC-Cce-----EEeecCCCCCCCCccCCC
Confidence 2222222234678999999999998876432 4577777743 322 234456667888899874
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=137.18 Aligned_cols=198 Identities=21% Similarity=0.244 Sum_probs=149.8
Q ss_pred eeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC
Q 013338 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 293 (445)
..|+.|++.|.+||+|+.+ |.|.|||+.+..... +.+|-.+|.+++||++|+.|++++.|..|.+||+..+.+.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 7899999999999999999 899999999877644 55688999999999999999999999999999999999866667
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc-ccccccCCCccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
...+|+.+.|+|..+..++++-.+..-..+.+.+... ...+.+.. .+.. ...+..|++.|+++++|..-
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h----~~Lp~d~d~dln~-----sas~~~fdr~g~yIitGtsK- 174 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH----SVLPKDDDGDLNS-----SASHGVFDRRGKYIITGTSK- 174 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce----eeccCCCcccccc-----ccccccccCCCCEEEEecCc-
Confidence 7889999999997666555543333344455443110 01110000 0000 23334689999999999877
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|.+.++|..+-+++. .++-. ...|..+.|+..|++ +.+..++-.|..|++.
T Consensus 175 -----Gkllv~~a~t~e~va-----s~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 175 -----GKLLVYDAETLECVA-----SFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEIS 226 (405)
T ss_pred -----ceEEEEecchheeee-----eeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehh
Confidence 999999999866653 33322 367889999988875 8888899999999875
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=127.16 Aligned_cols=286 Identities=11% Similarity=0.074 Sum_probs=179.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccC-------CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
|.+-+|+|.+++|+.|+.+|+|.+..+.. +.++......++|.++|+.++|..+ .|+ ++.||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Ll-s~gdG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLL-SGGDGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--hee-eccCceEEEeeeh
Confidence 45668999999999999999999998753 2344444444789999999999833 444 4556999988776
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecc--cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-ee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR 251 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~ 251 (445)
...+..... ..|.....++. -.-..|+++-..|..+.+++++.| +.++-||+++|+.+. +.
T Consensus 90 E~~es~~~K---------------~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 90 EEEESLATK---------------RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-GVIYQVDLEDGRIQREYR 153 (325)
T ss_pred hhhhhccch---------------hhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-eEEEEEEecCCEEEEEEc
Confidence 322211000 01111111111 011468899999988888888888 699999999998865 56
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc----------C-CCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------S-TSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----------~-~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
+|...|.++.--.....+++|++||++++||.++++..... . -...|.+++ -+..++++++. ...
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG--p~l 229 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG--PKL 229 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC--Cce
Confidence 78899999998556667999999999999999999873322 1 123344444 45678886644 334
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
..|++. ..++...+.-...+..+.|.. +.+++++.+ +.|.-|.+.. .+. ...+
T Consensus 230 slwhLr-------------sse~t~vfpipa~v~~v~F~~--d~vl~~G~g------~~v~~~~l~G-vl~-----a~ip 282 (325)
T KOG0649|consen 230 SLWHLR-------------SSESTCVFPIPARVHLVDFVD--DCVLIGGEG------NHVQSYTLNG-VLQ-----ANIP 282 (325)
T ss_pred eEEecc-------------CCCceEEEecccceeEeeeec--ceEEEeccc------cceeeeeecc-EEE-----Eecc
Confidence 444443 333344444333577787754 456667666 7899998863 221 1222
Q ss_pred CCCCCCCceeEeecCCCCCCCeEEEEecCeeeE-eeeeeeec
Q 013338 401 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC-TYPLIFRS 441 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~-~~~~~~~~ 441 (445)
..+...++..|+-.. -.+++++-.+.++. +-+|.|..
T Consensus 283 ~~s~~c~s~s~~~~p----~k~~s~ag~s~~~~i~~~~~~~~ 320 (325)
T KOG0649|consen 283 VESTACYSASWQTSP----IKFISIAGFSNKLHILKDFRFLD 320 (325)
T ss_pred CCccceeeecccCCc----eEEEEecccceeeeeeecccchh
Confidence 222233444443221 23566655555554 34455443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-14 Score=123.98 Aligned_cols=285 Identities=16% Similarity=0.236 Sum_probs=196.8
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCC-CCccccccccccccccccC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP-GNAASVRSGAASFLGALSR 195 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~ 195 (445)
+.-|.+|+++..+++........+.+.++-|+|+|+.+.|+++..+ |.|..|.++.. +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--------------- 79 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--------------- 79 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------
Confidence 5679999999777765544444678889999999997788877654 78888888732 2222
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCc---eeeecCCCC----------eeEEE
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLG---TPIRRGFGG----------LSILK 261 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~---~~~~~~~~~----------v~~~~ 261 (445)
.+...... ..+.+.++++++|++++++.+..|.|.++-++. |.. ..+..|.+. +....
T Consensus 80 -------~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 80 -------FLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -------EeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 22211111 234488999999999999999889999999965 433 233344443 78889
Q ss_pred EcCCCCEEEEEec-CCeEEEEeCCCCCcccc----cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 262 WSPTGDYFFAAKF-DGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 262 ~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+.|++++|++... -..|.+|++..+++... .......+.|.|+|++++.++.+.-++.+-.+......... ..
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~--~~ 229 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF--EE 229 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE--EE
Confidence 9999999988764 34799999998876332 24455678999999999999887777777666654431111 11
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
.+.-...-..+.+..+...+..+|||++|.++...- ..|.+|.+....-. +..+.....++.....+.|+|+|+
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~-----dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~ 303 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH-----DSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGR 303 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-----CeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCC
Confidence 110111112244444788999999999999876542 57999988643221 334555556777789999999999
Q ss_pred CCCCCeEEEEecCeeeEeeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+ +++..-+++.|.+|.+.=
T Consensus 304 ~----Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 304 F----LIAANQKSDNITVFERDK 322 (346)
T ss_pred E----EEEEccCCCcEEEEEEcC
Confidence 8 566666777787777653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-15 Score=135.46 Aligned_cols=288 Identities=20% Similarity=0.299 Sum_probs=191.1
Q ss_pred EEEEECC----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----CCcEEEEccCCC-CCcccccc
Q 013338 114 VAFISGS----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----KGGICIWAPSYP-GNAASVRS 184 (445)
Q Consensus 114 la~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----dg~i~vw~~~~~-~~~~~~~~ 184 (445)
++.|+.+ +.|.+|.++..+++...............|+++|+++.|+++.. .+.|..|++... +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L----- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL----- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-----
Confidence 4456655 78999999766666543332234556778999999888888776 378999988743 222
Q ss_pred ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCcee---eec--------
Q 013338 185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTP---IRR-------- 252 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~~~---~~~-------- 252 (445)
..+...... ......++++|++++|+++.+.+|.|.++++.. +.... ...
T Consensus 77 -----------------~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 77 -----------------TLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp -----------------EEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred -----------------EEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 223333322 256678999999999999998778999999987 33321 111
Q ss_pred ---CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC--ccc----ccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 253 ---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT--SEP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 253 ---~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~--~~~----~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
......++.++|+|+++++... ...|++|+++... +.. ........+.+.|+|+++++++....+..+..
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 2345789999999999887654 4589999998765 321 12455668899999999999999888888888
Q ss_pred EEeccCCCCccccccCcccccccc----ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVS----LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLI 396 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~~ 396 (445)
+++......... ...+.. +.+......++++|||++|+++..+. +.|.+|+++ ++++.. +
T Consensus 219 ~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~---~ 284 (345)
T PF10282_consen 219 FDYDPSDGSLTE------IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTL---V 284 (345)
T ss_dssp EEEETTTTEEEE------EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEE---E
T ss_pred EeecccCCceeE------EEEeeeccccccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEE---E
Confidence 877522211100 000111 12222578899999999999987763 789999994 455442 3
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
..+.........++++|+|++ ++..+..++.|.+|.+.-...
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~----l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRY----LYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSE----EEEEETTTTEEEEEEEETTTT
T ss_pred EEEeCCCCCccEEEEeCCCCE----EEEEecCCCeEEEEEEeCCCC
Confidence 344434555789999999987 455556788899998865443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-15 Score=144.04 Aligned_cols=288 Identities=20% Similarity=0.264 Sum_probs=194.2
Q ss_pred CeeEEEEccCCC--EEEE-E-----------------ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEE
Q 013338 101 DLQGVSWHQHKH--IVAF-I-----------------SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 101 ~v~~~~~sp~g~--~la~-~-----------------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~ 160 (445)
.++.+.|+|++. ...+ . ..++.+.||++..+ ......+ .....|++++|+|....++
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p-~~Pe~~~--~~~s~v~~~~f~p~~p~ll 258 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNP-NTPELVL--ESPSEVTCLKFCPFDPNLL 258 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCC-CCceEEE--ecCCceeEEEeccCCcceE
Confidence 578888888776 1111 0 01246899999765 2222333 3678899999999888888
Q ss_pred EEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeE
Q 013338 161 SVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSF 237 (445)
Q Consensus 161 ~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v 237 (445)
++|. +|.|.+||+.......... +-.....| ..+++.+.|..+. .-+++++.| |.|
T Consensus 259 ~gG~y~GqV~lWD~~~~~~~~~s~-------------------ls~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssD-G~i 317 (555)
T KOG1587|consen 259 AGGCYNGQVVLWDLRKGSDTPPSG-------------------LSALEVSH-SEPVTAVVWLQNEHNTEFFSLSSD-GSI 317 (555)
T ss_pred EeeccCceEEEEEccCCCCCCCcc-------------------cccccccC-CcCeEEEEEeccCCCCceEEEecC-CcE
Confidence 8876 5999999998554421100 01112234 4899999997644 449999999 899
Q ss_pred EEEEccCCCc------eeee-------cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc---------ccccCC
Q 013338 238 TIWDVAQGLG------TPIR-------RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS---------EPWSST 294 (445)
Q Consensus 238 ~vwd~~~~~~------~~~~-------~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~ 294 (445)
..|+++.-.. .... .....+++++|.+. -..+++|+.+|.|.--+....+. .....|
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 9998875322 0011 11346889999885 56789999999987744333222 234478
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
.+.|+++.++|-+..++.++. ++.+++|.... ...++..+..+. .+++++|||...-++.+..+
T Consensus 398 ~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~---------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~-- 462 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDV---------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG-- 462 (555)
T ss_pred CcceEeeecCCCccceeeeec----cceeEeccccC---------CCCcchhhhhccceeeeeEEcCcCceEEEEEcC--
Confidence 899999999999887776533 68888886531 223344444555 69999999988665554432
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
||.|.+||+.... ..|+....-+....+.+.|+++|+ +|++|-..|++.+|.+.
T Consensus 463 ---~G~l~iWDLl~~~---~~Pv~s~~~~~~~l~~~~~s~~g~-----~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 463 ---DGNLDIWDLLQDD---EEPVLSQKVCSPALTRVRWSPNGK-----LLAVGDANGTTHILKLS 516 (555)
T ss_pred ---CCceehhhhhccc---cCCcccccccccccceeecCCCCc-----EEEEecCCCcEEEEEcC
Confidence 2999999997432 223334444456667888888776 59999999999999884
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=133.48 Aligned_cols=249 Identities=16% Similarity=0.267 Sum_probs=166.9
Q ss_pred eeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-----
Q 013338 147 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----- 221 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----- 221 (445)
...+.|+|||..|++.+.|..+++|++....-....... ........++-.....|...+|-
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~-------------~~~~~~~~~r~~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-------------LNFSKHLSYRYQEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc-------------cccccceeEEeccCCEEEEEEeeecccc
Confidence 346899999999999999999999998732111110000 00011112222223556666663
Q ss_pred --CCCCeEEEEEecCCeEEEEEccCCCceeee---cCC---CCeeEEEEcCCCCEEEEEecCCeEEEEeC-CCCCc-c--
Q 013338 222 --PDGRYLASASYESSSFTIWDVAQGLGTPIR---RGF---GGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTS-E-- 289 (445)
Q Consensus 222 --p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~---~~v~~~~~sp~g~~l~~~~~dg~v~iwd~-~~~~~-~-- 289 (445)
|+..++++.+.+. -|++||.-+|+..... .|. ....+++|+|||.+|++|. .+.|++||+ +.+.. .
T Consensus 119 ~qP~t~l~a~ssr~~-PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQ-PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCCccceeeeccccC-ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcch
Confidence 6778889989994 9999999999875433 232 3456899999999998765 789999999 44443 1
Q ss_pred c-----ccCCCCCeeEEEECCCCC-eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 290 P-----WSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 290 ~-----~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
. ..+..+-+.+++|+|... .++.++ -....++.. ++ ...++..+-+|. +|+.+.|.++|
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-Y~q~~giy~-~~------------~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-YGQRVGIYN-DD------------GRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeec-ccceeeeEe-cC------------CCCceeeecccCCCeeeEEeccCc
Confidence 1 123466789999999776 555442 222222222 22 456677777888 99999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC-CCCceeEe--ecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPKPVAFS--FHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~v~~v~~s--pdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.|++|+.-. -.|..||++.-.. ++-.+..|.+ .=..|-|. |+|+ +|+-|-.+|.|.+|++-
T Consensus 263 n~lfsGaRk~-----dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~-----~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 263 NKLFSGARKD-----DKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGE-----ILASGDTDGSVRVWDLK 327 (406)
T ss_pred CeecccccCC-----CeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCc-----eeeccCCCccEEEEecC
Confidence 9999998652 6799999986332 2334555544 33455564 4444 68888889999999874
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=149.67 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=176.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC---CCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED---SEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~---~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
..|+.++|+|....|++++.|+++.+|++.. ..... ....+.+|.++|.|++..+++..++++|.||+|+.|++.
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p 374 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP 374 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence 3688999999999999999999999999932 11111 122235899999999999999999999999999999887
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--c
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--R 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~ 252 (445)
....+.... +.-.+...+.||. +.|+.+++|+....|++++.| |+++.|+........+. .
T Consensus 375 ~n~dp~ds~---------------dp~vl~~~l~Ght-davw~l~~s~~~~~Llscs~D-gTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 375 PNQDPDDSY---------------DPSVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSD-GTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred CCCCccccc---------------Ccchhccceeccc-cceeeeeecccccceeeecCC-ceEEeeccCCcCccccCCcc
Confidence 322221111 1113556688996 899999999998999999999 79999998776552222 2
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---cccc--------CCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~--------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
..+...++.+-... ++....+..+..+++...+. ..+. .....++.+.++|.+...+++. .++
T Consensus 438 e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h----ed~ 511 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH----EDR 511 (577)
T ss_pred ccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc----cCC
Confidence 23455566664322 22122233334444433322 1111 1224577888999998887663 345
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+++.+.. .+..+.....|. .++++++.|+|.+|++++.| +.+++|.+....+.
T Consensus 512 ~Ir~~dn~----------~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d------~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 512 SIRFFDNK----------TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD------GSVRLWKLDVKTCV 566 (577)
T ss_pred ceeccccc----------ccccchheeeccceecceeecCCCceEEeecCC------ceeehhhccchhee
Confidence 55554332 556666777777 89999999999999999998 99999999764443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-16 Score=145.03 Aligned_cols=296 Identities=13% Similarity=0.080 Sum_probs=200.2
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccC-CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED-SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+.+.+++.++||+++++|+|..||.|.+|.--. ......+++.+-|...|++++|+++|.+|+++|..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 344689999999999999999999999996432 2333445555668999999999999999999999999999999966
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-----
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----- 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----- 251 (445)
+ .+.+... .+.|..+.+|||+.+.+....|+ .|.+....+.......
T Consensus 284 ~-kqfLPRL--------------------------gs~I~~i~vS~ds~~~sl~~~DN-qI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 284 K-KQFLPRL--------------------------GSPILHIVVSPDSDLYSLVLEDN-QIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred C-ccccccc--------------------------CCeeEEEEEcCCCCeEEEEecCc-eEEEEeccchhhhhhccCccC
Confidence 5 2222211 47999999999999999999995 9999887654332111
Q ss_pred -------cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-----C------CCCCeeEEEECCCCCeEEE
Q 013338 252 -------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-----S------TSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 252 -------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-----~------~~~~v~~~~~sp~~~~l~~ 312 (445)
...+-.+.++++|.-+.++..+..|.|.+||+.+.+.. .+. . +.-.++.++.+..|.++++
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 11344678899998888999999999999999876541 111 1 1224677888888999987
Q ss_pred EEcCC------ceEEEEEeccCCCCccccccCcccccc-ccccCCC-c-cceEEeCCCCC-EEEEEEcCCCcccceEEEE
Q 013338 313 AFAGS------LTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ-G-IEKIAWDASGE-RLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 313 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~v 382 (445)
.-..- .....+++|...+... +.... .....|. . +..+..++... .+++++.| |.+++
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~k------t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d------g~~Ki 483 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSK------TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD------GDFKI 483 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcc------eeEEEEEEecCCCceeEEEEEecCcccceeEEeccC------CeEEE
Confidence 53210 0123444554321110 11111 1223455 3 33444444444 78888888 89999
Q ss_pred EEccCCCee---eeeeeeeee--CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 383 YDARRTPLI---SLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 383 wd~~~~~~~---~~~~~~~~~--~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|-+...+-+ .....+... -|..++++++||.||. +|++++ ++.|.+|+..-
T Consensus 484 W~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-----lla~s~-~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-----LLAVSF-DDTITIWDYDT 539 (792)
T ss_pred EEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-----EEEEec-CCEEEEecCCC
Confidence 998432111 011111222 2778899999999985 688886 67888887654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-17 Score=146.65 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=154.9
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
..++.++.||.+.|.+- .++....+ ..|.+.+.+-.|+|||.-|+++|.||.|++|.-. +..+.
T Consensus 76 d~~~i~s~DGkf~il~k---~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRS---------- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK---SARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRS---------- 139 (737)
T ss_pred ceEEEEcCCceEEEecc---cchhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHH----------
Confidence 46777889999888763 35544444 4799999999999999999999999999999865 11111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~ 270 (445)
++. ....+|.|++|.|+.+.++.+..+ .+.|=.+... +.++...|.+-|.++.|++..+.++
T Consensus 140 --------------tl~-Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~ 202 (737)
T KOG1524|consen 140 --------------TVV-QNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA 202 (737)
T ss_pred --------------HHh-hcCceeEEEEECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCcccccee
Confidence 111 124689999999998888887544 6777777654 4577889999999999999999999
Q ss_pred EEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 271 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
+|++|-..+|||.....+..-..|..+|++++|+|+ +.++.++ -...++... .-
T Consensus 203 sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-----~nt~R~~~p--------------------~~ 256 (737)
T KOG1524|consen 203 SGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-----YNTARFSSP--------------------RV 256 (737)
T ss_pred ecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeee-----eeeeeecCC--------------------Cc
Confidence 999999999999988777777789999999999999 4444332 223332110 11
Q ss_pred CccceEEeCCCCCEEEEEEcC
Q 013338 351 QGIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 351 ~~v~~~~~sp~g~~l~~~s~d 371 (445)
+.|..++||+||..+++|...
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred cceEEEEEcCCCceeeccccC
Confidence 268999999999999988776
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-16 Score=134.77 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=132.8
Q ss_pred eEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc-
Q 013338 216 TALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS- 292 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~- 292 (445)
..++|+.+|..+++++.| |++|+|+..+. .......|++.|.++.|+|||++|++.+.| ..+||+.+++.... ..
T Consensus 148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 689999999999999999 89999995544 445567789999999999999999999999 89999999985522 22
Q ss_pred -CCCCCeeEEEECCCC---CeEEEEE-cCCceEEE--EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEE
Q 013338 293 -STSGFVTGATWDPEG---RMILLAF-AGSLTLGS--IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 365 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~---~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 365 (445)
..+.....+.|+.|+ .+.+++. .....+.. +.+|+... -.+..+.+..+..|++++.|+||+++
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~---------~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN---------FLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc---------ccchhhhhhccCcceeEEEcCCCcEE
Confidence 233446677888776 3333232 22223333 33443210 11222233444579999999999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~ 418 (445)
|.|+.+ |.|.|++..+.+.+.. .-+.|...|+.+.|+||.++.
T Consensus 297 AlGT~d------GsVai~~~~~lq~~~~----vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 297 ALGTMD------GSVAIYDAKSLQRLQY----VKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred EEeccC------CcEEEEEeceeeeeEe----ehhhheeeeeeEEEcCCcCcc
Confidence 999998 8999999987555421 233699999999999998874
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=149.72 Aligned_cols=217 Identities=21% Similarity=0.260 Sum_probs=145.0
Q ss_pred CCeeEEEEccCCCEEEEEECC---CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~ 175 (445)
..+.+.+|||||+.||+++.+ ..|.+|++.. ++..... ...+....++|+|||+.|+++. .+|.+.||.++.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t--g~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS--GARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--CceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 358899999999999988743 4699999853 4322222 1223345789999998888775 467777775542
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGF 254 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~ 254 (445)
.+.. ...+..+. ..+..+.|+|||+.|++++...|...||++... .......+.
T Consensus 280 ~~~~------------------------~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~ 334 (429)
T PRK01742 280 NGGT------------------------PSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR 334 (429)
T ss_pred CCCC------------------------eEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC
Confidence 1111 11123332 567889999999998877754478888877532 222222333
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
. ..+.|+|+|++|++++.++ +.+||+.+++...+... ....++.|+|+|++|+++... +....|.+++.
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~------ 403 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-GLGKVLQLVSA------ 403 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEEC------
Confidence 3 5678999999998887765 56699998876544322 234578899999999977643 44455555432
Q ss_pred cccCccccccccccCCC-ccceEEeCCC
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDAS 361 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~ 361 (445)
++..+..+..|. .+..++|+|-
T Consensus 404 -----~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 -----DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -----CCCceEEccCCCCCCCCcccCCC
Confidence 455666777766 6889999984
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-16 Score=130.35 Aligned_cols=260 Identities=15% Similarity=0.227 Sum_probs=179.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+|.+|++|++.+|.+.....+.||.....+.-........|...|+.+.|+|..++|++++.|..-++|....
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~---- 86 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS---- 86 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC----
Confidence 4799999999999999999999999999875442223333367999999999999999999999999999999841
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-----eeecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-----~~~~~~ 254 (445)
++.|+..-.+..++ ..++++.|+|.++.+++|+..+ .|.||=.+...-- ....+.
T Consensus 87 ------------------~~~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 87 ------------------GGTWKPTLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ------------------CCeeccceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceehhhhhCCccc
Confidence 33566555566665 7899999999999999999884 8989887765432 223356
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..|.++.|+|++-+|++|+.|+..+||..--........ =+|-|..+=.+
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa---------p~pWgsk~PFG--------------------- 196 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA---------PTPWGSKMPFG--------------------- 196 (361)
T ss_pred cceeeeeccCCcceecccccCcceeEEEEeeeccccCCC---------CCCCccCCcHH---------------------
Confidence 789999999999999999999999999653322211110 11222222111
Q ss_pred cccCccccccccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 335 HLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..+.++.. .+++..+.|+|+|..|+-.+.| .++.+=|....... +..+.....+..++.|-.
T Consensus 197 -------~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------s~v~~~da~~p~~~----v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 197 -------QLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------STVSFVDAAGPSER----VQSVATAQLPLLSVSWIS 259 (361)
T ss_pred -------HHHHhhccCCCceeeeEeCCCCCEeeEecCC------CceEEeecCCCchh----ccchhhccCCceeeEeec
Confidence 11222212 2278999999999999999888 88888887654311 112221224556666654
Q ss_pred cCC-----CCCCCeEEEEecCe
Q 013338 414 HDK-----FKQGPLLSVCWSSG 430 (445)
Q Consensus 414 dg~-----~~~~~~l~~~~~~G 430 (445)
+.. |..+++|-+..+.|
T Consensus 260 e~~vv~ag~~c~P~lf~~~~~~ 281 (361)
T KOG1523|consen 260 ENSVVAAGYDCGPVLFVTDEEG 281 (361)
T ss_pred CCceeecCCCCCceEEEecccc
Confidence 433 23344454444444
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-16 Score=144.52 Aligned_cols=256 Identities=16% Similarity=0.211 Sum_probs=173.3
Q ss_pred CCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc---ceeEEecCCCCCeeEEEECcCCC--cEEEEecCCcEEEEcc
Q 013338 100 VDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK---DACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAP 173 (445)
Q Consensus 100 ~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~l~~spd~~--~l~~~~~dg~i~vw~~ 173 (445)
.+|.|+.|+|. ..++|.|..+|.|.+||+...... .+......|..+|+.+.|..+-. .+++++.||.|+.|++
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 47999999995 567777889999999999753331 12233346999999999965444 4999999999999988
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-----
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG----- 247 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~----- 247 (445)
+.-..+........ ......+.+....+++++|.+ +-..+++|+.+ |.|..-.....+.
T Consensus 323 ~~l~~P~e~~~~~~--------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~-G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 323 DMLSLPVEGLLLES--------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE-GKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred cccccchhhccccc--------------ccccccccccccceeeEeeccCCCceEEEEcCC-cEEEEEeccCCccccccc
Confidence 73333222111100 000000111225788999988 44567777766 7887644332211
Q ss_pred ----eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 248 ----TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 248 ----~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.....|.+.|+++.++|=+..++..+.|.+|+||.... ... ..+..+...+++++|||...-++++.+.++.+.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 12334678999999999877666555599999998773 222 445566777999999999998888877665555
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.|++... ...++.+.+.+. ..+.+.|+++|+.|++|... |.+.+|++..
T Consensus 468 iWDLl~~-----------~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~------G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQD-----------DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN------GTTHILKLSE 517 (555)
T ss_pred hhhhhcc-----------ccCCcccccccccccceeecCCCCcEEEEecCC------CcEEEEEcCc
Confidence 5554221 233333333334 67888899999999999877 9999999963
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.9e-16 Score=129.49 Aligned_cols=286 Identities=13% Similarity=0.163 Sum_probs=179.4
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
..+|++-..|.|+|||..+ ++.+..+ .++...++.+.|..+ ...+++++.||+|++||++...+...+.
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~------ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS------ 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee------
Confidence 5688888999999999854 6655555 578888899999663 3457778889999999999655544332
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe----cCCeEEEEEccCCCc-e--eeecCCCCeeEEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY----ESSSFTIWDVAQGLG-T--PIRRGFGGLSILKW 262 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~g~v~vwd~~~~~~-~--~~~~~~~~v~~~~~ 262 (445)
..++...+..+++.+-.++.+++|.. + -.|.+||++..+. . ....|...|+++.|
T Consensus 112 -----------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~-A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 112 -----------------WTQQSGTPFICLDLNCKKNIIACGTELTRSD-ASVVLWDVRSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred -----------------ccCCCCCcceEeeccCcCCeEEeccccccCc-eEEEEEEeccccchhhhhhhhccCcceeEEe
Confidence 22232357778888777788887753 3 3799999997765 2 23468899999999
Q ss_pred cCC-CCEEEEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCC--CeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 263 SPT-GDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 263 sp~-g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
+|. .+.|++|+.||-|.|||+..... .....+...|..+.|..++ +....+.. .....|.+.+........
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~--Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM--ETFAIYELEDGSEETWLE 251 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc--CceeEEEccCCChhhccc
Confidence 996 67889999999999999987643 3455788889999999888 54444433 233334433321110000
Q ss_pred ccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEE-ccCCCeeeeeeeeeeeC-CCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD-ARRTPLISLSLIGFIRG-PGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd-~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp 413 (445)
.-++.....+....-..+.......++..++.++.+.+. +.+.... ..++.. .+....+.+ |.+-|.++.|--
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~---~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNK---GTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFDV 326 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCc---eeEEEeeecccccc--cCccccccCCcHHHHHHHhhhc
Confidence 000000001111111122222223355666666554322 4444443 233333 233445665 667788888863
Q ss_pred cCCCCCCCeEEEEecCeeeEeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
. +.++--|-++|.++.|.
T Consensus 327 ~-----~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 327 K-----NDVLYTGGEDGLLQAWK 344 (376)
T ss_pred c-----cceeeccCCCceEEEEe
Confidence 3 33455666889988886
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-15 Score=141.16 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=150.7
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C--cEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.+.++|.+ +.....++ .+...+.+..|+|||++++.++.+ + .|.+||+..+.. ..
T Consensus 199 ~l~i~d~d---G~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~----------------- 256 (448)
T PRK04792 199 QLMIADYD---GYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EK----------------- 256 (448)
T ss_pred EEEEEeCC---CCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EE-----------------
Confidence 45555653 33334443 356788999999999888887653 3 577777763211 11
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d 275 (445)
+..+. ......+|+|||+.|+.....+| .|+++|+.+++...+..+.......+|+|||++|+..+. +
T Consensus 257 -----lt~~~----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 257 -----VTSFP----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred -----ecCCC----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence 11111 23346899999999887654435 478889888877777666666778999999998876654 3
Q ss_pred --CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCC
Q 013338 276 --GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
..|+++|+.+++...+..........+|+|||++|+......+. ++.+++. ......+....
T Consensus 328 g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~--------------~g~~~~lt~~~ 393 (448)
T PRK04792 328 GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE--------------TGAMQVLTSTR 393 (448)
T ss_pred CCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECC--------------CCCeEEccCCC
Confidence 36888888888775554333334567999999999876544332 2223321 11112222221
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......|+|||++|+..+..+.. ..+++++.+.+... .+..+.+.+...+|||-
T Consensus 394 ~d~~ps~spdG~~I~~~~~~~g~---~~l~~~~~~G~~~~------~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 394 LDESPSVAPNGTMVIYSTTYQGK---QVLAAVSIDGRFKA------RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 22355899999999887765432 56888887543222 34445566788899873
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=130.72 Aligned_cols=280 Identities=12% Similarity=0.114 Sum_probs=185.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC----CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED----SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~----~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
.-|+++.||.++++||+|+.|..+++|+++. .+.+.+......|...|.+|+|.....++++++.+++|.+.|+.+
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 4599999999999999999999999999863 233444444456778999999998877788888889999999985
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-c---eeee
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-G---TPIR 251 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~---~~~~ 251 (445)
+..+..... . ...+.|..+..+|-.+.|++.+.+ |.|.+||.+... . ....
T Consensus 137 ~qsi~V~~~-----------------------~-~~~~~VY~m~~~P~DN~~~~~t~~-~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 137 KQSIYVANE-----------------------N-NNRGDVYHMDQHPTDNTLIVVTRA-KLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred ceeeeeecc-----------------------c-CcccceeecccCCCCceEEEEecC-ceEEEEeccCCCCCCceeeec
Confidence 443222111 1 113689999999988889998888 799999998654 2 2222
Q ss_pred cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccc--------ccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 252 RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 252 ~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
........+.|+|. -.+|++++..+-+.+||.+..+... +......-.++.|+|+|..+++-...-.- -.
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P-~~ 270 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP-LY 270 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC-EE
Confidence 34567888999997 4567788888899999998766421 11222234678899999887743221111 11
Q ss_pred EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC-------------
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP------------- 389 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~------------- 389 (445)
+++.... .. ....+..+ .-+-....+.+++|--|-. +++|+.+ -.|++|.+....
T Consensus 271 ~D~~S~R--~~--V~k~D~N~-~GY~N~~T~KS~~F~~D~~-v~tGSD~------~~i~~WklP~~~ds~G~~~IG~~~~ 338 (609)
T KOG4227|consen 271 FDFISQR--CF--VLKSDHNP-NGYCNIKTIKSMTFIDDYT-VATGSDH------WGIHIWKLPRANDSYGFTQIGHDEE 338 (609)
T ss_pred eeeeccc--ce--eEeccCCC-Ccceeeeeeeeeeeeccee-eeccCcc------cceEEEecCCCccccCccccCcchh
Confidence 1111100 00 00000000 0000111467778865544 8888766 679999985211
Q ss_pred -----eeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 390 -----LISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 390 -----~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
++....+..++||..-++.|.|+|...+
T Consensus 339 ~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 339 EMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred hCchhheecceeEEEecccccccceeecCCcce
Confidence 1222345578899999999999998664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=138.48 Aligned_cols=194 Identities=16% Similarity=0.274 Sum_probs=139.9
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
.+++|+++|..|++++.||.+|||++.. -..+... ..|...|.+|.|+|||+.|++.+.| ..+||+++.+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--MLTILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc--chhhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999853 2222222 3588999999999999899999999 9999999955332221
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC---CeE-EEEEecCCeEEEEEccCCCc------eeeec
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG---RYL-ASASYESSSFTIWDVAQGLG------TPIRR 252 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l-~~~~~d~g~v~vwd~~~~~~------~~~~~ 252 (445)
.. ...+.....+.|+.|+ .+. ++.-...+.|+.||+..... .+...
T Consensus 224 t~------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 224 TP------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK 279 (398)
T ss_pred CC------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh
Confidence 10 0112456677787766 333 22223335777777653322 22223
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
....|.+++.+++|++++.|+.||.|-|++..+.+...+ ..|...|+.+.|+|+.++++. .+.+.....+.+
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l 353 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKL 353 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccc-cccCCceeEEEE
Confidence 356899999999999999999999999999998777433 378889999999999999986 333344444443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=130.43 Aligned_cols=261 Identities=17% Similarity=0.191 Sum_probs=173.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+++.|-.+++ |.+|...|.+++|++.. .+....+...+...|+.+.--|+ +.+.+-+.|..+.+|++......
T Consensus 15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt--~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i 90 (323)
T KOG0322|consen 15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQT--ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI 90 (323)
T ss_pred chheehhhccchh-hhcccccceEEEEEeec--CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceE
Confidence 3588888888877 66799999999999964 33333333247788999999998 78999999999999999842111
Q ss_pred cc----cccccccccccccCCC-----------------------CC-ceEEEEeecccCCCceeEEEECC--CCCeEEE
Q 013338 180 AS----VRSGAASFLGALSRGP-----------------------GT-RWTLVDFLRSQNGEQITALSWGP--DGRYLAS 229 (445)
Q Consensus 180 ~~----~~~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~ 229 (445)
.. ..+..+... ++...+ .. +......-...+.+.+.+..+.. ..+.++.
T Consensus 91 ~i~Si~~nslgFCrf-Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 91 SIHSIVVNSLGFCRF-SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEeeeeccccccccc-eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 00 000000000 000000 00 00011111111235666666533 3345666
Q ss_pred EEecCCeEEEEEccCCCc-----------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC--Cc---ccccC
Q 013338 230 ASYESSSFTIWDVAQGLG-----------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TS---EPWSS 293 (445)
Q Consensus 230 ~~~d~g~v~vwd~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~--~~---~~~~~ 293 (445)
+++..|.+.+||++++.. .....|.+.|.++.+.+.-..=++++.+..+..|++... .+ ....-
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l 249 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL 249 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe
Confidence 677669999999998632 223357789999999877666678888888889988653 33 12223
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
.+..+..+..-||++.+|+++ -++.++++.-+ +..++..++.|. +|++++|+|+...+|+++.|
T Consensus 250 knpGv~gvrIRpD~KIlATAG----WD~RiRVyswr----------tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD- 314 (323)
T KOG0322|consen 250 KNPGVSGVRIRPDGKILATAG----WDHRIRVYSWR----------TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD- 314 (323)
T ss_pred cCCCccceEEccCCcEEeecc----cCCcEEEEEec----------cCCchhhhhhhhcceeEEEeCCCCchhhhccCC-
Confidence 345688899999999999773 23333333221 677888899999 99999999999999999998
Q ss_pred CcccceEEEEEEc
Q 013338 373 DDIYKGLIAIYDA 385 (445)
Q Consensus 373 ~d~~d~~i~vwd~ 385 (445)
++|-+|++
T Consensus 315 -----~rISLWkL 322 (323)
T KOG0322|consen 315 -----ARISLWKL 322 (323)
T ss_pred -----ceEEeeec
Confidence 99999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-15 Score=140.26 Aligned_cols=181 Identities=14% Similarity=0.215 Sum_probs=131.8
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~ 287 (445)
..+.+.+|+|||+.|++.+..+ ..|.+||+.+++...+..+.+.+...+|+|||+.|+ +.+.++ .|++||+.+++
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 6899999999999999887532 489999999988777777777888999999999876 445555 58888999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+........|+|||+.|++..+..+ .++.+++ .......+..+. .+....|+|||++
T Consensus 282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~--------------~g~~~~~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA--------------DGSNPRRISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC--------------CCCCeEEeecCCCcccCeEECCCCCE
Confidence 8777777666778999999999987765433 3333332 222233333223 5677899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.+.+. ..|.+||+.++... .+. ....+..+.|+|||++
T Consensus 348 ia~~~~~~~~---~~i~~~d~~~~~~~------~lt-~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 348 IAFTKQGGGQ---FSIGVMKPDGSGER------ILT-SGFLVEGPTWAPNGRV 390 (435)
T ss_pred EEEEEcCCCc---eEEEEEECCCCceE------ecc-CCCCCCCCeECCCCCE
Confidence 9988765432 57899998765432 122 1234678999999986
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-15 Score=139.26 Aligned_cols=240 Identities=14% Similarity=0.152 Sum_probs=152.0
Q ss_pred EEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 123 VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 123 i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
|.++|.+ +.....+. .+...+...+|+|||++|++++.+ ..|.+|++..+.. ..
T Consensus 181 l~~~d~~---g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~------------------ 237 (430)
T PRK00178 181 LQRSDYD---GARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQ------------------ 237 (430)
T ss_pred EEEECCC---CCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EE------------------
Confidence 5555543 33334443 366788999999999988887754 3578888863221 11
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C-
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D- 275 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d- 275 (445)
+... .+.+....|+|||+.|+.....+| .|++||+.+++...+..+........|+|||+.|+..+. +
T Consensus 238 -------l~~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 238 -------ITNF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred -------ccCC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 1111 134457899999999886543324 688889998877777666666778899999998876654 3
Q ss_pred -CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 276 -GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 276 -g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
..|+++|+.+++...+...........|+|+|++|+.....++ ...+.+++. .......+.......
T Consensus 310 ~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl-----------~tg~~~~lt~~~~~~ 377 (430)
T PRK00178 310 KPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-NFHVAAQDL-----------QRGSVRILTDTSLDE 377 (430)
T ss_pred CceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC-ceEEEEEEC-----------CCCCEEEccCCCCCC
Confidence 3688889888877555433334456789999999987754333 122322222 111122222211233
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...|+|||++++..+..++. ..|+++++..+... .+..+.+.+...+|||-
T Consensus 378 ~p~~spdg~~i~~~~~~~g~---~~l~~~~~~g~~~~------~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGR---GVLMLVSINGRVRL------PLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 56899999999988765433 56888888654332 23334456778888874
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=136.25 Aligned_cols=249 Identities=14% Similarity=0.256 Sum_probs=165.4
Q ss_pred CCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...+|.++.|.+++. +++++|.|..|++|.+........ +........+..|+ ..|+++.|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------------~~~V~y~s~Ls~H~-~aVN~vRf~ 74 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------------DMKVEYLSSLSRHT-RAVNVVRFS 74 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------------ceeEEEeecccCCc-ceeEEEEEc
Confidence 456899999998876 788888999999999873322111 12345666788886 899999999
Q ss_pred CCCCeEEEEEecCCeEEEEEcc--------C-----CC-c---eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 222 PDGRYLASASYESSSFTIWDVA--------Q-----GL-G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~--------~-----~~-~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
|+|..|++|+.+ |.|.+|... + .+ . ..+..|...|..++|+|++.++++++.|+.+++||+.
T Consensus 75 p~gelLASg~D~-g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 75 PDGELLASGGDG-GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred CCcCeeeecCCC-ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 999999999988 799999876 2 10 1 2234577899999999999999999999999999999
Q ss_pred CCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCcc-----ccccC-ccccccccccCCC---cc
Q 013338 285 TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLD-----AHLLP-VDLPDIVSLTGSQ---GI 353 (445)
Q Consensus 285 ~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~---~v 353 (445)
.++. ..+..|...+..++|.|-++++++-+... .....+.+........ ..... ......+-+.... -.
T Consensus 154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 9998 55678999999999999999988532221 1111111110000000 00000 0111122222222 46
Q ss_pred ceEEeCCCCCEEEEEEcC---CCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 354 EKIAWDASGERLAVSYKG---GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d---~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
..++|+|||..|++.+.- +++-.-++.++|+-.. ...|+..+.+...++..+.|+|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCCcceEEEEeee
Confidence 788999999999875321 0000013345555432 2345566777777777888887
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-15 Score=141.19 Aligned_cols=181 Identities=22% Similarity=0.301 Sum_probs=128.8
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~ 287 (445)
..+.+++|+|||+.|++.+..+ ..|++||+.+++...+....+...+++|+|||+.|+ +.+.++ .|++||+.+++
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 5788999999999999887542 369999999887776666666666899999999876 445555 69999999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+......++|+|||+.|+++.+..+. ++.+++. ......+..+. ....++|+|||++
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------------~g~~~~lt~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------------GGSAERLTFQGNYNARASVSPDGKK 349 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEEeecCCCCccCEEECCCCCE
Confidence 87777666666789999999999877654433 3333321 11122222222 3457899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.+++. ..|++||+.+++.. .+. +......+.|+|||++
T Consensus 350 Ia~~~~~~~~---~~I~v~d~~~g~~~------~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 350 IAMVHGSGGQ---YRIAVMDLSTGSVR------TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred EEEEECCCCc---eeEEEEECCCCCeE------ECC-CCCCCCCceECCCCCE
Confidence 9987654322 47999999887654 122 2224557899999986
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-15 Score=128.26 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=174.4
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~ 182 (445)
-++|||+|+++|+++.- .+.|-|.++ -+....+. .-+.|.-+.|..|.-+++.+.. ++.|.+|++....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t--lq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----- 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET--LQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----- 82 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch--hhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecce-----
Confidence 47899999999988755 666777542 22222221 2456778999999767776654 5899999998222
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecCCCCeeEEE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFGGLSILK 261 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~ 261 (445)
|. ..+... ..++.+++|||||+.|+..+ .+ -.|.+|.+.+.+...+...+..+..++
T Consensus 83 ------------------w~--ckIdeg-~agls~~~WSPdgrhiL~tseF~-lriTVWSL~t~~~~~~~~pK~~~kg~~ 140 (447)
T KOG4497|consen 83 ------------------WY--CKIDEG-QAGLSSISWSPDGRHILLTSEFD-LRITVWSLNTQKGYLLPHPKTNVKGYA 140 (447)
T ss_pred ------------------eE--EEeccC-CCcceeeeECCCcceEeeeecce-eEEEEEEeccceeEEecccccCceeEE
Confidence 11 123333 37899999999997766554 45 589999999987776666667778999
Q ss_pred EcCCCCEEEEEecC------------------------------------CeEEEEeCCCCCcccccCCCCCeeEEEECC
Q 013338 262 WSPTGDYFFAAKFD------------------------------------GTFYLWETNTWTSEPWSSTSGFVTGATWDP 305 (445)
Q Consensus 262 ~sp~g~~l~~~~~d------------------------------------g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp 305 (445)
|+|||++.+.++.- ..+.+||.--.-..-...-+-.+..++|+|
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSP 220 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecc
Confidence 99999988776532 123444321111100112234577889999
Q ss_pred CCCeEEEEEcCCceEE-----EEEeccC---------------------------------CCCccccccCcc-------
Q 013338 306 EGRMILLAFAGSLTLG-----SIHFASK---------------------------------PPSLDAHLLPVD------- 340 (445)
Q Consensus 306 ~~~~l~~~~~~~~~~~-----~~~~~~~---------------------------------~~~~~~~~~~~~------- 340 (445)
.+++|++|..+ ...+ .|....+ +...+.+.+...
T Consensus 221 ~~qflavGsyD-~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 221 CNQFLAVGSYD-QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred ccceEEeeccc-hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 99999987432 2222 1221110 001111111110
Q ss_pred -----c---cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 341 -----L---PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 341 -----~---~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
. ++...+.... ++.-++||+|..++++-.. .+.+.+.+||++..++. .+-....+|....|
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd----~~PnalW~Wdlq~l~l~------avLiQk~piraf~W 369 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND----KYPNALWLWDLQNLKLH------AVLIQKHPIRAFEW 369 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecC----CCCceEEEEechhhhhh------hhhhhccceeEEEe
Confidence 0 0011111223 6888999999999998543 35589999999976544 12223457778888
Q ss_pred eecCCCCCCCeEEEEecCeeeEeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.|..- -|+++....++++|.
T Consensus 370 dP~~p-----rL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 370 DPGRP-----RLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCc-----eEEEEcCCceEEEEc
Confidence 87532 366666555655553
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=133.29 Aligned_cols=240 Identities=15% Similarity=0.257 Sum_probs=165.7
Q ss_pred CCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~ 174 (445)
.....++|+-| ..++|.|+.-|.|+|.|+.. ++....+ .+|...|+.+.|.|+.. .+++++.|..|++|+++
T Consensus 90 Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~--~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 90 ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS--GQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred cceEEEEEEecCCCCCeeEEeecceeEEEEEecch--hhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 34677888754 46899999999999999853 5544444 58999999999999854 45666778999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-------
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------- 247 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~------- 247 (445)
+..... ...-+.+|. ..|.++.|+++|.+|++++.|. ++++|++...+.
T Consensus 167 ~~~Cv~----------------------VfGG~egHr-deVLSvD~~~~gd~i~ScGmDh-slk~W~l~~~~f~~~lE~s 222 (385)
T KOG1034|consen 167 TDVCVA----------------------VFGGVEGHR-DEVLSVDFSLDGDRIASCGMDH-SLKLWRLNVKEFKNKLELS 222 (385)
T ss_pred CCeEEE----------------------Eeccccccc-CcEEEEEEcCCCCeeeccCCcc-eEEEEecChhHHhhhhhhh
Confidence 332211 122356786 8999999999999999999995 999999984311
Q ss_pred ----------------e------eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-Cc--------------cc
Q 013338 248 ----------------T------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS--------------EP 290 (445)
Q Consensus 248 ----------------~------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~--------------~~ 290 (445)
. ...-|...|.|+.|- |.++++=+-++.|..|....- +. ..
T Consensus 223 ~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~ 300 (385)
T KOG1034|consen 223 ITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE 300 (385)
T ss_pred cccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeE
Confidence 0 001244556666663 678888888999999977211 11 01
Q ss_pred ccCCCCCee--EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEE
Q 013338 291 WSSTSGFVT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERL 365 (445)
Q Consensus 291 ~~~~~~~v~--~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l 365 (445)
+.-....+. ..+|.|-++.|+.+ ...+.+..|++....+ ....++..+. .|.+.+|+.||..|
T Consensus 301 ~~~~~c~iWfirf~~d~~~~~la~g-nq~g~v~vwdL~~~ep-----------~~~ttl~~s~~~~tVRQ~sfS~dgs~l 368 (385)
T KOG1034|consen 301 FDYPMCDIWFIRFAFDPWQKMLALG-NQSGKVYVWDLDNNEP-----------PKCTTLTHSKSGSTVRQTSFSRDGSIL 368 (385)
T ss_pred eccCccceEEEEEeecHHHHHHhhc-cCCCcEEEEECCCCCC-----------ccCceEEeccccceeeeeeecccCcEE
Confidence 112223333 34667788888865 3446667776654321 1222232222 69999999999999
Q ss_pred EEEEcCCCcccceEEEEEEcc
Q 013338 366 AVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+....| ++|.-||..
T Consensus 369 v~vcdd------~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDD------GTVWRWDRV 383 (385)
T ss_pred EEEeCC------CcEEEEEee
Confidence 998887 889888854
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-14 Score=134.60 Aligned_cols=285 Identities=23% Similarity=0.365 Sum_probs=197.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEE-CcCCC-cEEEEec-CCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-RPNGG-RSLSVGC-KGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~-spd~~-~l~~~~~-dg~i~vw~~~~ 175 (445)
...+.++.+.+.+..++.++.|+.+.+|+..... .....+...+...+..+.+ ++++. .++..+. ++.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 4579999999999999999999999999986422 1333332223246777777 88866 3444344 79999999983
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe-cCCeEEEEEccCCCcee-eecC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP-IRRG 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~g~v~vwd~~~~~~~~-~~~~ 253 (445)
.......+..|. ..|..++|+|+++.+++++. + +.+++|++..+.... +..|
T Consensus 144 ------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 144 ------------------------PGKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLD-GTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ------------------------CCeEEEEEecCc-ccEEEEEECCCCCEEEecCCCC-CceEEEEcCCCceEEeeccC
Confidence 013455566775 78999999999998888875 7 799999999865544 4447
Q ss_pred CCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 254 FGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 254 ~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
...+.+++|+|++. .+++++.|+.|++||...+... .+..|.... ...|++++.+++.+ ..+..+..+++....
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~- 274 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASG-SSDGTIRLWDLRSSS- 274 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEe-cCCCcEEEeeecCCC-
Confidence 89999999999998 5555589999999998866664 366666664 33899999777633 344444444432211
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
..+..+..|. .+.++.|+|++..+++++.+ +.+.+|+..+........ ...|...+..+
T Consensus 275 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 334 (466)
T COG2319 275 -----------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSD------GTVRLWDLETGKLLSSLT---LKGHEGPVSSL 334 (466)
T ss_pred -----------cEEEEEecCCccEEEEEECCCCCEEEEeeCC------CcEEEEEcCCCceEEEee---ecccCCceEEE
Confidence 1122224555 89999999999999987776 679999888766543211 23677778888
Q ss_pred eEeecCCCCCCCeEEEE-ecCeeeEeeeee
Q 013338 410 AFSFHDKFKQGPLLSVC-WSSGFCCTYPLI 438 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~-~~~G~v~~~~~~ 438 (445)
.| +.. +..+..+ ..++.+.+|++.
T Consensus 335 ~~-~~~----~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 335 SF-SPD----GSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred EE-CCC----CCEEEEeecCCCcEEeeecC
Confidence 88 422 2234444 455666665544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-15 Score=139.50 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=129.2
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg--~v~iwd~~~~~ 287 (445)
..+.+.+|||||+.|++.+..+ ..+.+|++.+++...+....+.+..++|+|||+.|+.. +.++ .|++||+++++
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 5789999999999999876432 37999999988776666556666789999999988865 4344 69999999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+......+..+.|+|||+.|+++.+..+ .++.+++ .......+.... ......|+|||++
T Consensus 279 ~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~--------------~~g~~~~lt~~~~~~~~~~~SpDG~~ 344 (429)
T PRK03629 279 IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI--------------NGGAPQRITWEGSQNQDADVSSDGKF 344 (429)
T ss_pred EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC--------------CCCCeEEeecCCCCccCEEECCCCCE
Confidence 8777766667789999999999987765433 2333332 112222333333 4567899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.++.. ..|++||+.+++... +.. ........|||||++
T Consensus 345 Ia~~~~~~g~---~~I~~~dl~~g~~~~------Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 345 MVMVSSNGGQ---QHIAKQDLATGGVQV------LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEEccCCC---ceEEEEECCCCCeEE------eCC-CCCCCCceECCCCCE
Confidence 9987765432 579999998876542 221 112347899999986
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-15 Score=138.95 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=126.2
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE-EecCCe--EEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDGT--FYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~dg~--v~iwd~~~~~ 287 (445)
..+.+.+|+|||+.|++.+.++ ..|.+||+.+++...+....+.+...+|+|||+.|+. .+.++. |+++|+.++.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 6788999999999999887543 2599999999887766656667778999999998874 566765 5555666666
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA 366 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~ 366 (445)
...+..+......+.|+|||+.|++..+..+....+.+.. .......+.... .....+|||||++|+
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------------SGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------------CCCceEEEecCCCCcCceEECCCCCEEE
Confidence 6666666666678899999999987655433333333221 111111121112 345688999999999
Q ss_pred EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
..+.++.. ..|++||+.+++... +.. ......+.|+|||++
T Consensus 344 ~~s~~~g~---~~I~v~d~~~g~~~~------lt~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 344 YISRVGGA---FKLYVQDLATGQVTA------LTD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EEEccCCc---EEEEEEECCCCCeEE------ccC-CCCccCceECCCCCE
Confidence 87765332 479999998876542 221 223468899999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-15 Score=143.50 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=189.0
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.-..+.|+|-...++++.....|+|||++. ++....+.. .....|+.+.+-. |...++++++||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~--~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEK--GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEeccc--CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456789999999999988888999999964 444443322 2345788888843 3456888889999999975433
Q ss_pred C-CccccccccccccccccCCCCCceEEE-EeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--c
Q 013338 177 G-NAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--R 252 (445)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~ 252 (445)
. ....+.+. |.-+ ..+.+.. +.-.-+.|.....+|+++|.- ..|+|||........-. +
T Consensus 1144 ~~~~~eLVTa---------------w~~Ls~~~~~~r-~~~~v~dWqQ~~G~Ll~tGd~-r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1144 KWKKPELVTA---------------WSSLSDQLPGAR-GTGLVVDWQQQSGHLLVTGDV-RSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred ccCCceeEEe---------------eccccccCccCC-CCCeeeehhhhCCeEEecCCe-eEEEEEecccceeEeecccC
Confidence 2 11111111 1111 1111111 112456788766677776666 49999999877654322 2
Q ss_pred CCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCc----ccccCCCCC--eeEEEECCCCCe-EEEEEcCCceEEEEE
Q 013338 253 GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGF--VTGATWDPEGRM-ILLAFAGSLTLGSIH 324 (445)
Q Consensus 253 ~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~--v~~~~~sp~~~~-l~~~~~~~~~~~~~~ 324 (445)
....|+++.-+ +.|+.+++|..||.|++||.+.... .....|+.. |..+.+.+.|-- |+++ +.++ .+.
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg-s~~G---~I~ 1282 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG-SQDG---DIQ 1282 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee-ccCC---eEE
Confidence 34566766644 3479999999999999999987554 234466666 999999887654 5544 3334 444
Q ss_pred eccCCCCccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
+|+.+.. ......++..|. ..+++..+++...+|+|+. +.|+||++...++........+.
T Consensus 1283 ~~DlR~~--------~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1283 LLDLRMS--------SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred EEecccC--------cccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecChhhhcccccCcccc
Confidence 4443221 011111222222 3899999999999999875 68999999865544322222222
Q ss_pred C-CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 401 G-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 401 ~-~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+ ..+.+.+++|+|..- +|++|..+..|++|.-
T Consensus 1348 ~q~~gs~scL~FHP~~~-----llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRL-----LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCcCCCcceeeecchhH-----hhhhccCCceEEEeec
Confidence 2 345679999999743 6899999999999863
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=140.52 Aligned_cols=257 Identities=13% Similarity=0.207 Sum_probs=181.8
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..|...|+.++|.|-...+++++.||.+++|++.. .... .......+.++++|. ++|.|+++
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk-~~~s----------------~~~~~epi~tfraH~-gPVl~v~v 352 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK-AKKS----------------AEKDVEPILTFRAHE-GPVLCVVV 352 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcc-cCCc----------------cccceeeeEEEeccc-CceEEEEe
Confidence 46889999999999988999999999999999952 1111 112345778899996 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCC-----------ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGL-----------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~-----------~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
.++++.+++|+-| |+|+.|++.... ...+.+|...|+.+++|+...+|++++.||++++|+.......
T Consensus 353 ~~n~~~~ysgg~D-g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~ 431 (577)
T KOG0642|consen 353 PSNGEHCYSGGID-GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC 431 (577)
T ss_pred cCCceEEEeeccC-ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc
Confidence 9999999999999 799999664221 1346678999999999999999999999999999998776652
Q ss_pred ccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC---CccceEEeCCCCCE
Q 013338 290 PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGER 364 (445)
Q Consensus 290 ~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~ 364 (445)
.+. ...+...++.+-.....+.++. ...+...+.+........+. .. ....+. ..+..+.++|.+.+
T Consensus 432 ~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~--~s---~~~~~~~~~~~in~vVs~~~~~~ 503 (577)
T KOG0642|consen 432 TFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIF--ES---SASPGPRRYPQINKVVSHPTADI 503 (577)
T ss_pred ccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeec--cc---cCCCcccccCccceEEecCCCCe
Confidence 222 2233445566544332222111 11111111111100000000 00 011111 14788999999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.+++..+ +.|+++|..+++++ .....|...++++++.|+|-| |..+-.+|++.++.+..+
T Consensus 504 ~~~~hed------~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~~ng~~-----l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 504 TFTAHED------RSIRFFDNKTGKIL-----HSMVAHKDSVTSLAIDPNGPY-----LMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred eEecccC------Cceecccccccccc-----hheeeccceecceeecCCCce-----EEeecCCceeehhhccch
Confidence 9988877 99999999988776 356678999999999999765 788889999999887654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=134.56 Aligned_cols=209 Identities=11% Similarity=0.182 Sum_probs=153.9
Q ss_pred ecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC--------ceeeecCCCCeeEEEEcCC-CCEEEEEecCC
Q 013338 207 LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL--------GTPIRRGFGGLSILKWSPT-GDYFFAAKFDG 276 (445)
Q Consensus 207 ~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~--------~~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg 276 (445)
+.+|. ++|..++|+| +...||+||.|. +|.||++..+. ...+.+|...|.-++|+|. .+.|++++.|.
T Consensus 77 v~GHt-~~vLDi~w~PfnD~vIASgSeD~-~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 77 VCGHT-APVLDIDWCPFNDCVIASGSEDT-KVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ccCcc-ccccccccCccCCceeecCCCCc-eEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 56776 8999999999 667899999995 99999987542 2456678999999999997 56788999999
Q ss_pred eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccc
Q 013338 277 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIE 354 (445)
Q Consensus 277 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~ 354 (445)
+|.+||+.+++......|...|.+++|+.||.+++++ .++..+++|+.. .++.+..-.+|. .-.
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Tt----ckDKkvRv~dpr----------~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTT----CKDKKVRVIDPR----------RGTVVSEGVAHEGAKPA 220 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeee----cccceeEEEcCC----------CCcEeeecccccCCCcc
Confidence 9999999999974334499999999999999999987 456777777654 445555555666 566
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEe
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~ 434 (445)
.+.|-.+|+.+-+|...-.+ ..+-+||..+-+.. .....+. .+..|.---|.||-+. +..||-.||.|.+
T Consensus 221 Raifl~~g~i~tTGfsr~se---Rq~aLwdp~nl~eP--~~~~elD-tSnGvl~PFyD~dt~i----vYl~GKGD~~IRY 290 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSE---RQIALWDPNNLEEP--IALQELD-TSNGVLLPFYDPDTSI----VYLCGKGDSSIRY 290 (472)
T ss_pred eeEEeccCceeeeccccccc---cceeccCcccccCc--ceeEEec-cCCceEEeeecCCCCE----EEEEecCCcceEE
Confidence 77788899966666544333 88999998753221 0011222 2344444445566444 6778889999999
Q ss_pred eeeeeec
Q 013338 435 YPLIFRS 441 (445)
Q Consensus 435 ~~~~~~~ 441 (445)
|.+.-.+
T Consensus 291 yEit~d~ 297 (472)
T KOG0303|consen 291 FEITNEP 297 (472)
T ss_pred EEecCCC
Confidence 9987554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-14 Score=136.77 Aligned_cols=237 Identities=17% Similarity=0.261 Sum_probs=151.5
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.++|.+ +.....+. .+...+.+.+|+|||++++++... ..|.+|++..+.. .
T Consensus 171 ~l~~~d~~---g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~------------------ 227 (417)
T TIGR02800 171 ELQVADYD---GANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-E------------------ 227 (417)
T ss_pred eEEEEcCC---CCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-E------------------
Confidence 45666653 33334443 356678999999999988887654 4788999873211 1
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD- 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d- 275 (445)
. +..+ ...+.+++|+|||+.|+.....+| .|++||+.++....+..+........|+|+|++|+..+..
T Consensus 228 ----~---~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 228 ----K---VASF-PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred ----E---eecC-CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC
Confidence 1 1112 145567899999998876543223 5889999888776666665556678999999998766543
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
+ .|+++|+.+++...+..+......+.|+|+|++++.+..... .+..+++.. .....+....
T Consensus 300 g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~ 365 (417)
T TIGR02800 300 GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--------------GGERVLTDTG 365 (417)
T ss_pred CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------------CCeEEccCCC
Confidence 2 688899988877666656667778999999999987755432 333333321 1112222222
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
......|+|||++|+..+.++.. ..+++.+....... .+..+...+..++|+
T Consensus 366 ~~~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g~~~~------~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 366 LDESPSFAPNGRMILYATTRGGR---GVLGLVSTDGRFRA------RLPLGNGDVREPAWS 417 (417)
T ss_pred CCCCceECCCCCEEEEEEeCCCc---EEEEEEECCCceee------ECCCCCCCcCCCCCC
Confidence 34567899999999988876443 46777775543221 233334445555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-15 Score=125.05 Aligned_cols=244 Identities=16% Similarity=0.242 Sum_probs=161.7
Q ss_pred CeeEEEEcc--CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC-CCeeEEEECcCCCcEEEEec-----CCcEEEEc
Q 013338 101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGC-----KGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp--~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~v~~l~~spd~~~l~~~~~-----dg~i~vw~ 172 (445)
.++.++|.. ....+.+|+.||+|++||+........... ..+. .+..+++.+-. ..+++++. +-.+.+||
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-~~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwD 149 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-TQQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWD 149 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-cCCCCCcceEeeccCc-CCeEEeccccccCceEEEEEE
Confidence 366777766 456788999999999999975433333323 3344 45667776655 45666654 46789999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEe-ecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc---
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--- 247 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~--- 247 (445)
++..+++ ++. ...|+ ..|+++.|+| +.+.|++|+.| |-|.+||+.....
T Consensus 150 vR~~qq~------------------------l~~~~eSH~-DDVT~lrFHP~~pnlLlSGSvD-GLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 150 VRSEQQL------------------------LRQLNESHN-DDVTQLRFHPSDPNLLLSGSVD-GLVNLFDTKKDNEEDA 203 (376)
T ss_pred eccccch------------------------hhhhhhhcc-CcceeEEecCCCCCeEEeeccc-ceEEeeecCCCcchhh
Confidence 9844432 122 33454 8999999999 66789999999 8999999986533
Q ss_pred -eeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcccccCCC-------------CCeeEEEECC-CCCeEE
Q 013338 248 -TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTS-------------GFVTGATWDP-EGRMIL 311 (445)
Q Consensus 248 -~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~sp-~~~~l~ 311 (445)
.....+...|.++.|..++ +.|.+-+...+..+|+++.+......... ..+-. +.+| +....+
T Consensus 204 L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~ 282 (376)
T KOG1188|consen 204 LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCA 282 (376)
T ss_pred HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEE
Confidence 3445667889999999776 46888888999999999987753221111 11111 1223 334444
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++...+....+.+-+..... ....+..+.++. -|.++.|...+.++.+|++| |.+.+|..+
T Consensus 283 l~g~~~n~~~~~~~~~~~s~~-------~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED------G~l~~Wk~~ 346 (376)
T KOG1188|consen 283 LAGTDSNKGTIFPLVDTSSGS-------LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED------GLLQAWKVE 346 (376)
T ss_pred EeccccCceeEEEeeeccccc-------ccCccccccCCcHHHHHHHhhhcccceeeccCCC------ceEEEEecC
Confidence 444334444555443321100 233455566644 68999999999999999988 999999964
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-16 Score=125.37 Aligned_cols=244 Identities=17% Similarity=0.170 Sum_probs=154.4
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
++|...|+++.|..+ .+|+++...|.|++|++.+......+ +.+....|+.+.-
T Consensus 11 Rp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~-------------------------r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLI-------------------------RLFGRLFITNLQS 64 (323)
T ss_pred ccccchheehhhccc-hhhhcccccceEEEEEeecCccchhh-------------------------hhhccceeeceee
Confidence 479999999999988 57888888899999999854433222 2222234444444
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCC-----------------------------------------------Cc--eeee
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQG-----------------------------------------------LG--TPIR 251 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~-----------------------------------------------~~--~~~~ 251 (445)
-|+ ..+.+-+.| +.+.+|++.-+ .. ..+.
T Consensus 65 ~p~-d~l~tqgRd-~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~ 142 (323)
T KOG0322|consen 65 IPN-DSLDTQGRD-PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA 142 (323)
T ss_pred cCC-cchhhcCCC-ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEcc
Confidence 444 233344444 35555544321 00 1111
Q ss_pred -----cCCCCeeEEEEcC-CCC--EEEEEecCCeEEEEeCCCCCc-----------ccccCCCCCeeEEEECCCCCeEEE
Q 013338 252 -----RGFGGLSILKWSP-TGD--YFFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 252 -----~~~~~v~~~~~sp-~g~--~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~~ 312 (445)
...+.+.+..|.. ++. +|++|.++|.|.+||+.++.. .....|..++.++.|.+.-..=+.
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis 222 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS 222 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence 1124566666543 233 356788899999999998632 233468889999999764332222
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++.. ..+-+|+..... . ....-.+..-.. +|..+.+-||++.+|+++.| ++||||+.++.
T Consensus 223 gga~----dkl~~~Sl~~s~----g--slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD------~RiRVyswrtl--- 283 (323)
T KOG0322|consen 223 GGAD----DKLVMYSLNHST----G--SLQIRKEITLKNPGVSGVRIRPDGKILATAGWD------HRIRVYSWRTL--- 283 (323)
T ss_pred CCcc----ccceeeeecccc----C--cccccceEEecCCCccceEEccCCcEEeecccC------CcEEEEEeccC---
Confidence 2221 112222211100 0 111111222223 79999999999999999887 99999999974
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.++..++-|...|++++|+||.. +++.+..|++|.+|+++
T Consensus 284 --~pLAVLkyHsagvn~vAfspd~~-----lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 284 --NPLAVLKYHSAGVNAVAFSPDCE-----LMAAASKDARISLWKLY 323 (323)
T ss_pred --CchhhhhhhhcceeEEEeCCCCc-----hhhhccCCceEEeeecC
Confidence 44567888999999999999944 57888899999999875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-15 Score=122.61 Aligned_cols=193 Identities=17% Similarity=0.300 Sum_probs=147.0
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw~~~~~~ 177 (445)
.++++..|+. +-++|.+.+-|-+..|||++.+..-.+++....|...|+.++|...+.. ++++|.||.+++||++...
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le 230 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE 230 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc
Confidence 4789999986 5688889999999999999864222234444679999999999986655 5567789999999999555
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc--eeeecCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--TPIRRGF 254 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~ 254 (445)
+...+.... .. ..+...++|++ |-+++|+-..|+..|.|.|++.... ..+..|.
T Consensus 231 HSTIIYE~p----------------------~~-~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 231 HSTIIYEDP----------------------SP-STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred cceEEecCC----------------------CC-CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 443333221 11 25788899988 6678888888877899999986543 5677899
Q ss_pred CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc------cccCCCCCeeEEEECC-CCCeEEEEEc
Q 013338 255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDP-EGRMILLAFA 315 (445)
Q Consensus 255 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~v~~~~~sp-~~~~l~~~~~ 315 (445)
+.|+.++|.|. ...|++++.|.++-+||+...-.. ......+.|+.+.|++ ...+++++.+
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 99999999997 668999999999999999864331 1224677899999995 5678887754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-13 Score=122.95 Aligned_cols=262 Identities=14% Similarity=0.214 Sum_probs=170.9
Q ss_pred CeeEEEEccCCCEEEEEEC----CCeEEEEEccCCCCcceeEEecC-CCCCeeEEEECcCCCcEEEEec-CCcEEEEccC
Q 013338 101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS 174 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~----d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~ 174 (445)
....++++|++++|.+... ++.|..|.++..+++....-... .......++++|+++.++++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567899999999998876 57999999876434433322111 3445677999999888887775 5999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEe---ecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--cee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTP 249 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~~~ 249 (445)
..+......... ..... -.........++.|+|+++++++.......|.+|++.... ...
T Consensus 118 ~~g~l~~~~~~~---------------~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 118 DDGSLGEVVQTV---------------RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp TTSEEEEEEEEE---------------ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred CCcccceeeeec---------------ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 554333221100 00000 0011235678999999999998876543489999998765 322
Q ss_pred ----eecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCCccc------cc---CCCCCeeEEEECCCCCeEEEE
Q 013338 250 ----IRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEP------WS---STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 250 ----~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~--~~~~~~------~~---~~~~~v~~~~~sp~~~~l~~~ 313 (445)
..........++|+|+++++.+.. .+++|.+|++. +++... +. ........+.++|||++|+++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 123457789999999999886554 47789999988 443311 11 112257889999999999999
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCe
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPL 390 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~ 390 (445)
......+..+++..... ....+..+.... ....++++|+|++|+++..++ +.|.+|+++ +|.+
T Consensus 263 nr~~~sI~vf~~d~~~g---------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATG---------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKL 328 (345)
T ss_dssp ECTTTEEEEEEECTTTT---------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEE
T ss_pred eccCCEEEEEEEecCCC---------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcE
Confidence 88888888888743211 112233333333 578999999999999998764 679999774 5554
Q ss_pred e
Q 013338 391 I 391 (445)
Q Consensus 391 ~ 391 (445)
.
T Consensus 329 ~ 329 (345)
T PF10282_consen 329 T 329 (345)
T ss_dssp E
T ss_pred E
Confidence 4
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-13 Score=114.98 Aligned_cols=260 Identities=13% Similarity=0.200 Sum_probs=175.7
Q ss_pred CCeeEEEEccCCCEEEEEEC---CCeEEEEEccCCCCcceeEEec-CCCCCeeEEEECcCCCcEEEEecC-CcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~---d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~ 174 (445)
...+-++|+|++++|.++.. +|.|.-|.++..+|+....-.. ....+...++++++++.++++... |.|.++-++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 35778999999999988764 5778888887655654322111 122334789999997777777665 899999997
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeeccc----CCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
..+.+...... ....-.+. ....+....+.|++++|++....--.|.+|++..+.....
T Consensus 120 ~dG~l~~~v~~-----------------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 120 ADGSLQPVVQV-----------------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred cCCccccceee-----------------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccc
Confidence 55544332111 00001100 1123789999999999998854222799999998866433
Q ss_pred e----cCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC--CCccccc---------CCCCCeeEEEECCCCCeEEEEE
Q 013338 251 R----RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSEPWS---------STSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 251 ~----~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~--~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
. ......+.|+|+|++++..+.+ .+++|.+|.... ++...++ ........+..++||++|+++.
T Consensus 183 ~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 183 DPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 2 3457789999999999986555 489999999887 4433222 2244567899999999999887
Q ss_pred cCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCe
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPL 390 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~ 390 (445)
.+...+..+++..... ....+.....+. ....+.|+|+|++|+++..++ ..|.+|.++ +|++
T Consensus 263 Rg~dsI~~f~V~~~~g---------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-----d~i~vf~~d~~TG~L 327 (346)
T COG2706 263 RGHDSIAVFSVDPDGG---------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-----DNITVFERDKETGRL 327 (346)
T ss_pred CCCCeEEEEEEcCCCC---------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-----CcEEEEEEcCCCceE
Confidence 7666677777643211 111122223334 578999999999999999886 458888775 4444
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=134.45 Aligned_cols=274 Identities=16% Similarity=0.175 Sum_probs=189.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+-|..+.|+..|..|++|+.|..|.+||+.. ++....+..+|...|....|-|. .+.++.++.||.+++=.+...+
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~--~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVS--GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhc--cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 4699999999999999999999999999954 55556666789998888888764 2568888899999987766332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCceeee----c
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIR----R 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~~~----~ 252 (445)
.... ...+..|. ++|..++.-|+. ..|.+++.| +.+.-+|++.+...... .
T Consensus 221 ~~e~----------------------t~rl~~h~-g~vhklav~p~sp~~f~S~geD-~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 221 YVEN----------------------TKRLAPHE-GPVHKLAVEPDSPKPFLSCGED-AVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred ceec----------------------ceeccccc-CccceeeecCCCCCcccccccc-cceeeeeeccCCccceeeeecc
Confidence 2211 12244554 899999999955 458888888 69999999987553221 2
Q ss_pred CCC---CeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc-------ccc------CCCCCeeEEEECCCCCeEEEEEc
Q 013338 253 GFG---GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-------PWS------STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 253 ~~~---~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-------~~~------~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+.. ....++.+|... ++++++.|..+++||.+.-... ++. ...-.|++++|+.++.-++++..
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 233 567899998755 7899999999999998763321 111 23446899999977766665543
Q ss_pred CCceEEEEEeccCCCCccccccCcc---ccccccccCCC---ccceEE-eCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVD---LPDIVSLTGSQ---GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~v~~~~-~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+ ..++.+ ...........+.. ....+.+++|. .|..+- |.|...|+++||.- |.|+||+-.++
T Consensus 357 D-e~IYLF---~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC------GhIFiW~K~t~ 426 (559)
T KOG1334|consen 357 D-EDIYLF---NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC------GHIFIWDKKTG 426 (559)
T ss_pred c-cceEEe---ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc------ceEEEEecchh
Confidence 2 223333 22111111111111 11223378888 577776 57889999999877 99999999988
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
+++ +.+.+....|+|+.=+|.
T Consensus 427 eii-----~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 427 EII-----RFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred HHH-----HHhhcccceEeccCCCCC
Confidence 776 356665557888876664
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-14 Score=128.89 Aligned_cols=283 Identities=17% Similarity=0.182 Sum_probs=167.3
Q ss_pred EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccccccc
Q 013338 115 AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS 194 (445)
Q Consensus 115 a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 194 (445)
++-..++.+.|.|.+ +.+.+..+..+ ...-..+.|+|||+++++++.||.|.++|+.+.+....
T Consensus 10 V~~~~~~~v~viD~~--t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~------------- 73 (369)
T PF02239_consen 10 VVERGSGSVAVIDGA--TNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT------------- 73 (369)
T ss_dssp EEEGGGTEEEEEETT--T-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-------------
T ss_pred EEecCCCEEEEEECC--CCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-------------
Confidence 445578999999874 45656666432 22335578999999999999999999999985543333
Q ss_pred CCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec--------CCCCeeEEEEcCCC
Q 013338 195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--------GFGGLSILKWSPTG 266 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~--------~~~~v~~~~~sp~g 266 (445)
++.. ....++++|+||++++++....+.+.++|.++.+...... ....+..+..+|..
T Consensus 74 ------------i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 74 ------------IKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp ------------EE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred ------------EecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC
Confidence 3322 4678899999999999998766899999999887654332 13467788888888
Q ss_pred CEEEEEec-CCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc------cc---
Q 013338 267 DYFFAAKF-DGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL------DA--- 334 (445)
Q Consensus 267 ~~l~~~~~-dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~--- 334 (445)
..++..-. .+.|.+.|....+.. .............|+|++++++++...+..+..++........ ..
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 86665544 589999998776542 2334556778899999999998876555555555543210000 00
Q ss_pred -----------ccc----------------------CccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 335 -----------HLL----------------------PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 335 -----------~~~----------------------~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
..| ...++.++++.....-..+.-+|+++++.+...-+.+ .++|.
T Consensus 220 ~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~ 297 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQ 297 (369)
T ss_dssp TEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EE
T ss_pred ccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC--CceEE
Confidence 000 0122334444444422677889999999987211111 27999
Q ss_pred EEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 382 IYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++|.++.+.. ..+. +....+..+.|++||++. ++++-..+|.|.+|+-
T Consensus 298 viD~~tl~~~-----~~i~~~~~~~~~h~ef~~dG~~v---~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 298 VIDKKTLKVV-----KTITPGPGKRVVHMEFNPDGKEV---WVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEECCGTEEE-----E-HHHHHT--EEEEEE-TTSSEE---EEEEE--TTEEEEEET
T ss_pred EEECcCccee-----EEEeccCCCcEeccEECCCCCEE---EEEEecCCCEEEEEEC
Confidence 9999986543 2222 223347899999999872 5555445558888863
|
... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=120.84 Aligned_cols=154 Identities=16% Similarity=0.336 Sum_probs=110.6
Q ss_pred EEEEccCCCEEEEEEC----------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe--cCCcEEEE
Q 013338 104 GVSWHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGICIW 171 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~--~dg~i~vw 171 (445)
.+.|+|+|++|++-.. -+...||.++..+. ....+.....++|.+++|+|+|..++++. .+..|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 6889999988876432 23466777754333 23333333556799999999998876664 35799999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEccCCCcee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTP 249 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~~~~~~~ 249 (445)
|++ .. .+..+. ...+..+.|||+|++|++++.+ .|.|.+||.++.+...
T Consensus 89 d~~-~~-------------------------~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~ 139 (194)
T PF08662_consen 89 DVK-GK-------------------------KIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS 139 (194)
T ss_pred cCc-cc-------------------------EeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence 996 11 122222 2567899999999999998754 2679999999776655
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCc
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTS 288 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~ 288 (445)
...+. .+..++|+|+|++|+++.. |+.++||+.....+
T Consensus 140 ~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 140 TFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 55444 5789999999999998764 67899999865443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=134.02 Aligned_cols=235 Identities=15% Similarity=0.167 Sum_probs=155.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+-|+|+.|+.+|.+|++|+.|-.+.|||.- ..+.+..+..+|...|.++.|-|. .+.+++++.|..|+++|+...+
T Consensus 51 GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGSDDTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred ceecceeecCCCCEEeecCCcceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 349999999999999999999999999984 466677777799999999999874 2456677789999999998322
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc-ee------
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG-TP------ 249 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~-~~------ 249 (445)
....- .+.-.....+..|. .+|..++..|++ ..+.+++.| |+++-||++.... .+
T Consensus 129 ~~~~d---------------~~~~~~~~~~~cht-~rVKria~~p~~PhtfwsasED-GtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 129 EGGMD---------------HGMEETTRCWSCHT-DRVKRIATAPNGPHTFWSASED-GTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred ccccc---------------cCccchhhhhhhhh-hhhhheecCCCCCceEEEecCC-cceeeecccCCccCCccccccH
Confidence 11100 00111233355565 789999999988 778889999 8999999986422 10
Q ss_pred -ee---cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccccc-------CCCCCeeEEE-ECCCCCeEEEEEcC
Q 013338 250 -IR---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGAT-WDPEGRMILLAFAG 316 (445)
Q Consensus 250 -~~---~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~~~-~sp~~~~l~~~~~~ 316 (445)
+. ..--...++..+|. ..+|++|+.|-..++||.+.... .+. .......++. |+|.+-..
T Consensus 192 ~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk-s~~s~~~~~~~pp~~~~cv~yf~p~hlkn------ 264 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK-SFRSDGTMNTCPPKDCRCVRYFSPGHLKN------ 264 (758)
T ss_pred HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc-CCCCCccccCCCCcccchhheecCccccC------
Confidence 11 11235678999996 56789999999999999654221 111 1111222222 33332100
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..+..+ .-+..++-+.|+|+|.-|++.-.+ -.|+++|+..++..
T Consensus 265 --~~gn~~-----------------------~~~~~~t~vtfnpNGtElLvs~~g------EhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 265 --SQGNLD-----------------------RYITCCTYVTFNPNGTELLVSWGG------EHVYLFDVNEDKSP 308 (758)
T ss_pred --cccccc-----------------------cceeeeEEEEECCCCcEEEEeeCC------eEEEEEeecCCCCc
Confidence 000000 001136788999999877765444 57999999876654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=122.90 Aligned_cols=233 Identities=17% Similarity=0.328 Sum_probs=155.5
Q ss_pred CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
...+..++|++.--.+++++.|..|++|+-.. ..+..+ +......|++++|-|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------------------------ks~sQrnvtclawRPl 151 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------------------------KSVSQRNVTCLAWRPL 151 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------------------------cchhhcceeEEEeccC
Confidence 34578899999755677778899999999774 222222 2222468999999995
Q ss_pred C-CeEEEEEecCCeEEEEEccCC----C--------ceeeec--CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC
Q 013338 224 G-RYLASASYESSSFTIWDVAQG----L--------GTPIRR--GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT 287 (445)
Q Consensus 224 ~-~~l~~~~~d~g~v~vwd~~~~----~--------~~~~~~--~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~ 287 (445)
+ +.|+.++.. -|.+|..... . ...+.. .+..|++++|.+||..+++++- |..|.|||.+++.
T Consensus 152 saselavgCr~--gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 152 SASELAVGCRA--GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred Ccceeeeeecc--eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 4 556666654 6999976521 1 011122 2468999999999999998876 5689999999999
Q ss_pred ccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEE
Q 013338 288 SEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 288 ~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
...+. ...+.++-+.||||+.+++++ ..+..+++|....... ..+-.-+.+.|...+|+|+|++|+
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaA----t~davfrlw~e~q~wt---------~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAA----TCDAVFRLWQENQSWT---------KERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEe----cccceeeeehhcccce---------ecceeccCCceeeeeecCCCCEEE
Confidence 87776 455678889999999999977 4467888885543221 111122333799999999999988
Q ss_pred EEEcCCCcccceEEEEEEccCC--C--ee------eeeeeeee------eC---CCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 367 VSYKGGDDIYKGLIAIYDARRT--P--LI------SLSLIGFI------RG---PGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~--~--~~------~~~~~~~~------~~---~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
.++.. .-++|.+.-. . .. ...++..+ .+ ..+.+.+++|.|.|.| |++-+
T Consensus 297 f~~sg-------sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-----Lav~f 364 (445)
T KOG2139|consen 297 FACSG-------SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-----LAVIF 364 (445)
T ss_pred EEEcC-------CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-----EEEEE
Confidence 77653 3455554310 0 00 01111111 11 2467889999999987 66655
Q ss_pred cC
Q 013338 428 SS 429 (445)
Q Consensus 428 ~~ 429 (445)
..
T Consensus 365 Kg 366 (445)
T KOG2139|consen 365 KG 366 (445)
T ss_pred cC
Confidence 43
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-13 Score=128.43 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=142.6
Q ss_pred EEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc--EEEEec-CC--cEEEEccCCCCCccccccccccccccccCCCC
Q 013338 124 IVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGC-KG--GICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 124 ~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~--l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.||-++. +|.....++. ....+.+-+|+|||+. ++..+. ++ .|.+.++..+ ....
T Consensus 166 ~l~~~d~-dG~~~~~lt~-~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~----------------- 225 (428)
T PRK01029 166 ELWSVDY-DGQNLRPLTQ-EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKK----------------- 225 (428)
T ss_pred eEEEEcC-CCCCceEccc-CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceE-----------------
Confidence 4444442 3444444543 4556778899999876 333443 34 4555566522 1111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC----eEEEEEccCC---CceeeecCC-CCeeEEEEcCCCCEEE
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----SFTIWDVAQG---LGTPIRRGF-GGLSILKWSPTGDYFF 270 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----~v~vwd~~~~---~~~~~~~~~-~~v~~~~~sp~g~~l~ 270 (445)
+..+. +.....+|||||+.|+..+...| .+.+|++..+ ....+.... ......+|+|||+.|+
T Consensus 226 -----lt~~~----g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 226 -----ILALQ----GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred -----eecCC----CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 11122 33456899999999988764223 3444777653 334444332 3456789999999888
Q ss_pred EEe-cCCe--EEEEeCCC--CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc
Q 013338 271 AAK-FDGT--FYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 345 (445)
Q Consensus 271 ~~~-~dg~--v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
..+ .+|. |+++++.. +....+......+....|+|||+.|+......+ ...+.+++. ......
T Consensus 297 f~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl-----------~~g~~~ 364 (428)
T PRK01029 297 FVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDL-----------ATGRDY 364 (428)
T ss_pred EEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC-CcEEEEEEC-----------CCCCeE
Confidence 665 3554 55555543 233445455556778999999999987654332 122333322 222223
Q ss_pred cccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 346 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 346 ~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
.+.... .+....|+|||++|+..+..... ..|++||+.+++... +....+.+...+|||-.
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~------Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRK------IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEE------eecCCCcccCceecCCC
Confidence 333222 56789999999998876554333 689999998876542 22233456778898753
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-13 Score=116.26 Aligned_cols=276 Identities=15% Similarity=0.268 Sum_probs=167.7
Q ss_pred CeeEEEEccCCCEEEEE-ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.|.-+.|..|..+++++ ..++.|.+|++.. .+.-+.+ .....++.+++|||||+.++..+. +-.|.+|.+.+...
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Q--pew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQ--PEWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeec--ceeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 57788999999887765 5788999999964 3444555 345678999999999988887765 68999999985432
Q ss_pred ccccccccccccccccCCCCCc---------------------eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeE
Q 013338 179 AASVRSGAASFLGALSRGPGTR---------------------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 237 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v 237 (445)
....... .....++...+++ |.+++.+.-.. -..+.+.|+|||..|++-..- =.-
T Consensus 127 ~~~~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVwd~~-Ley 202 (447)
T KOG4497|consen 127 YLLPHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVWDNV-LEY 202 (447)
T ss_pred EEecccc--cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEecch-hhh
Confidence 2111000 0001111111111 22333333332 355667777776665543211 011
Q ss_pred EEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----------------------------
Q 013338 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---------------------------- 289 (445)
Q Consensus 238 ~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---------------------------- 289 (445)
+++ ...-.-++..++|+|.+++|++|+.|+.+++.+--+.+..
T Consensus 203 kv~---------aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 203 KVY---------AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred eee---------eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 111 1122356888999999999999999998888653321100
Q ss_pred ---------------------------------ccc------CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCC
Q 013338 290 ---------------------------------PWS------STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKP 329 (445)
Q Consensus 290 ---------------------------------~~~------~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~ 329 (445)
.+. .....+.-++|++|..++++-.+.- ...+.|++..
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-- 351 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-- 351 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh--
Confidence 000 0112345579999999988654321 2344554432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
.+....+....+|....|+|....|+.+... ..+++|.......+ ...+.+-.|..+
T Consensus 352 -----------l~l~avLiQk~piraf~WdP~~prL~vctg~------srLY~W~psg~~~V------~vP~~GF~i~~l 408 (447)
T KOG4497|consen 352 -----------LKLHAVLIQKHPIRAFEWDPGRPRLVVCTGK------SRLYFWAPSGPRVV------GVPKKGFNIQKL 408 (447)
T ss_pred -----------hhhhhhhhhccceeEEEeCCCCceEEEEcCC------ceEEEEcCCCceEE------ecCCCCceeeeE
Confidence 2222223333379999999999888887655 67999998753332 233445678999
Q ss_pred eEeecCCC
Q 013338 410 AFSFHDKF 417 (445)
Q Consensus 410 ~~spdg~~ 417 (445)
.|.-+|.+
T Consensus 409 ~W~~~g~~ 416 (447)
T KOG4497|consen 409 QWLQPGEF 416 (447)
T ss_pred EecCCCcE
Confidence 99988876
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.6e-14 Score=119.52 Aligned_cols=240 Identities=12% Similarity=0.123 Sum_probs=168.2
Q ss_pred CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
...+..+.|+.+ ..+++.|.....++|+...-...... .. .+..|..+-|+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~Gyk~~~~~~~~k~~~~------------------------~~--~~~~IvEmLFSS- 56 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDGYKIFSCSPFEKCFSK------------------------DT--EGVSIVEMLFSS- 56 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCceeEEecCchHHhhcc------------------------cC--CCeEEEEeeccc-
Confidence 345667779988 56777776666788887722210000 00 123455666654
Q ss_pred CCeEEEEEecC-CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cc---cCCCCCe
Q 013338 224 GRYLASASYES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW---SSTSGFV 298 (445)
Q Consensus 224 ~~~l~~~~~d~-g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~---~~~~~~v 298 (445)
.++|..+.+. ..+++++.+.+..+.-......|.+|.++ .+.|+++-++ .|+|||+++.++. .+ ..+...+
T Consensus 57 -SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 57 -SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred -ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 4666665543 25899998887766666677899999995 4566666654 4999999998872 22 2445556
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
.++++++.+.+++.-.+ ...+.+.+++.. +...+..+..|. .+.+++|+++|.+||++|+.|
T Consensus 133 ~AlS~n~~n~ylAyp~s--~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----- 195 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGS--TTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----- 195 (391)
T ss_pred EeeccCCCCceEEecCC--CCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc-----
Confidence 67777777778886543 345666666543 566777888999 899999999999999999875
Q ss_pred eEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 378 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
..||||.+.+|+.+.....+. .--.|.+++|+||++| |++.-+.+.|.+|.+.-.
T Consensus 196 TVIRVf~v~~G~kl~eFRRG~---~~~~IySL~Fs~ds~~-----L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 196 TVIRVFSVPEGQKLYEFRRGT---YPVSIYSLSFSPDSQF-----LAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEEEEcCCccEeeeeeCCc---eeeEEEEEEECCCCCe-----EEEecCCCeEEEEEeccc
Confidence 679999999988774222211 1345889999999886 888889999999988643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-14 Score=119.28 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=161.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~ 178 (445)
.+..+.|+.+...|..|+.||. ++|..+. -++ +.........|--+-|+.. .++.++.+ ..+++.+......
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~-~~k--~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSP-FEK--CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred ceeeeeeccceeEEEccCCCce-eEEecCc-hHH--hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCce
Confidence 4667779999999999999884 6777643 122 1111123334556667754 55555554 5688888773322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee----cCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----~~~ 254 (445)
+..+.-. ..|.++.++. +.|+++-.+ .|+|||+++.+..... .+.
T Consensus 81 -------------------------ICe~~fp--t~IL~VrmNr--~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 81 -------------------------ICEIFFP--TSILAVRMNR--KRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred -------------------------EEEEecC--CceEEEEEcc--ceEEEEEcc--cEEEEecccceeehhhhccCCCc
Confidence 2222222 5788898875 456666555 6999999998775432 244
Q ss_pred CCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSPTGDYFFAA--KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~--~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.++.+++.+.+|+.- ...|.|.|||+.+-+. ..+..|.+.+.+++|+++|.+||++.+....++++.+.
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~----- 204 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP----- 204 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-----
Confidence 556666666667788843 3468999999998776 45669999999999999999999998776666666653
Q ss_pred ccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++..+.++.-.. .|.+++|+|++++|++.|.. ++|.+|.++.
T Consensus 205 --------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T------eTVHiFKL~~ 249 (391)
T KOG2110|consen 205 --------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT------ETVHIFKLEK 249 (391)
T ss_pred --------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC------CeEEEEEecc
Confidence 444444454333 69999999999999988877 8999999874
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=142.23 Aligned_cols=254 Identities=17% Similarity=0.160 Sum_probs=175.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+|+|+.|...|.++++|+.|..++||..+ ++.+.... .+|.+.|+.++.+.+...+++++.|..|++|.+...
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~e--t~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~---- 264 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSME--TARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG---- 264 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeecc--chhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecCCC----
Confidence 69999999999999999999999999975 46665555 689999999999998667777888999999999832
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----ee-ecCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PI-RRGFG 255 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~-~~~~~ 255 (445)
.++..+++|. +.|++++|+|-. +.+.| |++++||.+-.-.. .. .....
T Consensus 265 ---------------------~pvsvLrght-gavtaiafsP~~----sss~d-gt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 265 ---------------------APVSVLRGHT-GAVTAIAFSPRA----SSSDD-GTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred ---------------------chHHHHhccc-cceeeeccCccc----cCCCC-CceEeccccccccccCCCCCCccccc
Confidence 2344578886 899999999954 55666 89999998821111 11 12235
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
-+.++.|..++..+++++.|+.-..|...... .+...+.-+.++.+-..+......+.....|++.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--------- 383 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA-----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--------- 383 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh-----hhccceEEEeccccccccceeeeeeeEeeeeecc---------
Confidence 56777788888899999999987777554322 1222222222222322222222223334444433
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEE-EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~-~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
++.....+.+|. .+..+.++|-...++ +++.| |...|||+-.|..++. ...+|. .+..-+||+
T Consensus 384 ----~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d------gst~iwdi~eg~pik~----y~~gh~-kl~d~kFSq 448 (1113)
T KOG0644|consen 384 ----TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD------GSTIIWDIWEGIPIKH----YFIGHG-KLVDGKFSQ 448 (1113)
T ss_pred ----cchhhhhhcccccceeeeeecCCCcHhhhhccCC------CceEeeecccCCccee----eecccc-eeeccccCC
Confidence 455566677888 899999999776665 44444 9999999987665532 223554 445778999
Q ss_pred cCCC
Q 013338 414 HDKF 417 (445)
Q Consensus 414 dg~~ 417 (445)
||.-
T Consensus 449 dgts 452 (1113)
T KOG0644|consen 449 DGTS 452 (1113)
T ss_pred CCce
Confidence 9864
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=129.50 Aligned_cols=187 Identities=21% Similarity=0.389 Sum_probs=127.7
Q ss_pred ccCCCEEEEEECCCeEEEEEccCCCCcceeEEec----CCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccc-
Q 013338 108 HQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS----DSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS- 181 (445)
Q Consensus 108 sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~- 181 (445)
.|.+--|..|-..|.+.+.+.... ....+.. -....|+++.|-|.+..++.++ .+|.+.+||.........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~---~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF---EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh---HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 355656667888888888775431 1111111 1346899999998766655555 579999998752211110
Q ss_pred ----ccccc-ccccccc---cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-c
Q 013338 182 ----VRSGA-ASFLGAL---SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-R 252 (445)
Q Consensus 182 ----~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~ 252 (445)
+..+. +...... ...+..+|.. . .+.|..++|+|||++||+.+.| |.++|||..+.+..-+. .
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~------~-~g~in~f~FS~DG~~LA~VSqD-GfLRvF~fdt~eLlg~mkS 330 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHI------G-EGSINEFAFSPDGKYLATVSQD-GFLRIFDFDTQELLGVMKS 330 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEe------c-cccccceeEcCCCceEEEEecC-ceEEEeeccHHHHHHHHHh
Confidence 00000 0000000 0011111211 1 2588999999999999999999 89999999987765433 3
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP 305 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp 305 (445)
.-+...|++|||||++|++|++|.-|.||.+...+. .+-.+|+.+|+.++|.|
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 468899999999999999999999999999998887 45679999999999997
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-12 Score=122.95 Aligned_cols=279 Identities=20% Similarity=0.348 Sum_probs=187.6
Q ss_pred cCCeeEEEEccCCCEEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~vw~~~~~ 176 (445)
...|.+++|+|++..+++++. ++.+++|+... +.....+ .+|...|.+++|+|++..++++ +.|+.+++|+....
T Consensus 155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred cccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 346889999999998888875 99999999853 3444444 4589999999999997645555 77899999966511
Q ss_pred CCccccccccccccccccCCCCCceEEEE-eecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-ee-eecC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP-IRRG 253 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~-~~~~ 253 (445)
. ... .+.+|. ... ...|+|++..+++++.+ +.+++|++..... .. ...|
T Consensus 232 ~-------------------------~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 232 K-------------------------LLRSTLSGHS-DSV-VSSFSPDGSLLASGSSD-GTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred c-------------------------EEeeecCCCC-cce-eEeECCCCCEEEEecCC-CcEEEeeecCCCcEEEEEecC
Confidence 1 222 355564 343 33899999888888888 6999999987664 22 3356
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
...+.++.|+|++..+++++.|+.+.+||..+.... .. ..|...+..+.|.+++..++.+...+ ..+.+|+...
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 360 (466)
T COG2319 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD---GTIRLWDLRT 360 (466)
T ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCC---CcEEeeecCC
Confidence 789999999999888888988988999999887752 22 25666788999943335566553333 3333343221
Q ss_pred CccccccCccccccccccCCCccceEEeCCCCCEEEE-EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
............+..+.+++ ...++. +..+ +.+.+|+........ ....+...+...
T Consensus 361 ----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 418 (466)
T COG2319 361 ----------GKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTD------GTVRLWDLSTGSLLR-----NLDGHTSRVTSL 418 (466)
T ss_pred ----------CceeEEecCCceEEEEEECC-CCCEEEEecCC------CceEEEecccCeeee-----eccCCCCcEEEE
Confidence 11111111111378888988 533333 3444 899999998765542 222221567777
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+++++.+ +..+.+++.+..|.+.
T Consensus 419 ~~~~~~~~-----~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 419 DFSPDGKS-----LASGSSDNTIRLWDLK 442 (466)
T ss_pred EECCCCcE-----EEEecCCCcEEEEecc
Confidence 88877664 4445667777776654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-13 Score=127.44 Aligned_cols=181 Identities=17% Similarity=0.218 Sum_probs=125.0
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE-EecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~dg--~v~iwd~~~~~ 287 (445)
..+....|+|||+.|++.+.++ ..|.+||+.+++...+....+.+...+|+|||+.|+. ...++ .|++||+.+++
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 5788999999999998877553 2689999998877766655566678999999998874 44444 68999999988
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+........|+|||+.|+...+..+ .++.+++. ......+.... ......|+|||++
T Consensus 279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~--------------~g~~~~lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN--------------GGRAERVTFVGNYNARPRLSADGKT 344 (430)
T ss_pred eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEeecCCCCccceEECCCCCE
Confidence 7777666666778899999999887755433 23333321 11111221111 3456789999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+..... ..|.+||+.+++... +.. ........|+|||++
T Consensus 345 i~~~~~~~~~---~~l~~~dl~tg~~~~------lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 345 LVMVHRQDGN---FHVAAQDLQRGSVRI------LTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EEEEEccCCc---eEEEEEECCCCCEEE------ccC-CCCCCCceECCCCCE
Confidence 9987754322 468999998876542 211 122236689999986
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.9e-13 Score=124.68 Aligned_cols=303 Identities=14% Similarity=0.166 Sum_probs=194.8
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcce--eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.++.+++.|.+.+..- +..+.+|.....+ +.. ......|.-.+++.++||.++.++++..||.|.+|.--......
T Consensus 164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEE-eeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 5788888888776554 4557788876433 111 11223577779999999998888888888999999744211100
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.....+.-|+ ..|.+++|+++|.+|++|+.. |.+.+|.+.+++.+-+..-.+.|..+
T Consensus 242 ---------------------~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG~E-~VLv~Wq~~T~~kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 242 ---------------------ETCTLLHWHH-DEVNSLSFSSDGAYLLSGGRE-GVLVLWQLETGKKQFLPRLGSPILHI 298 (792)
T ss_pred ---------------------ccceEEEecc-cccceeEEecCCceEeecccc-eEEEEEeecCCCcccccccCCeeEEE
Confidence 1223466676 799999999999999999999 79999999999976677778999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-----------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-----------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-----------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.++||+.+.+....|+.|.+....+.+.+ .+. ...+-.+.++++|.-+.++.. ...+.+..+++...
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-GHPGHVQFYDLYTD 377 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec-CCCceEEEEecccc
Confidence 99999999999999999999988665442 111 123345778888844444433 12233333443322
Q ss_pred CCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC--ccc--ceEEEEEEccCCCeeeeeeeeeee-CC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD--DIY--KGLIAIYDARRTPLISLSLIGFIR-GP 402 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~--d~~--d~~i~vwd~~~~~~~~~~~~~~~~-~~ 402 (445)
..-.+.+.- ..........+. .++.++.+-.|.+++|.-.-.+ ... ...+++|-......- ..+...+. .|
T Consensus 378 ~~i~~~~v~--~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt-~~L~T~I~~PH 454 (792)
T KOG1963|consen 378 STIYKLQVC--DENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT-FILNTKINNPH 454 (792)
T ss_pred ceeeeEEEE--eecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce-eEEEEEEecCC
Confidence 211111100 000000110222 7889999999999998643111 011 157899987654332 33333333 68
Q ss_pred CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 403 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 403 ~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
...+...+|.+.-+-. .++++ -.+|.+.+|-|
T Consensus 455 ~~~~vat~~~~~~rs~--~~vta-~~dg~~KiW~~ 486 (792)
T KOG1963|consen 455 GNAFVATIFLNPTRSV--RCVTA-SVDGDFKIWVF 486 (792)
T ss_pred CceeEEEEEecCcccc--eeEEe-ccCCeEEEEEE
Confidence 8777777777664432 33333 36888888887
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-13 Score=126.24 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=123.2
Q ss_pred CceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEE-EecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~dg--~v~iwd~~~~~ 287 (445)
..+.+..|+|||+.|+..+.++| .|++||+.+++...+....+.....+|+|||+.|+. .+.++ .|+++|+.+++
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 57889999999999998876533 588899988876666554555568899999998875 45555 48888999888
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+......++|+|||++|++.....+. ++.+++. ......+.... .....+|+|||++
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------------~g~~~~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------------SGKVSRLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEEecCCCCCcCeeECCCCCE
Confidence 77777666667789999999999877654333 3333321 11122222122 3456799999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+..+.++.. ..|.++|+.+++... +... .......|+|||++
T Consensus 364 l~~~~~~~g~---~~I~~~dl~~g~~~~------lt~~-~~d~~ps~spdG~~ 406 (448)
T PRK04792 364 MIMVNRTNGK---FNIARQDLETGAMQV------LTST-RLDESPSVAPNGTM 406 (448)
T ss_pred EEEEEecCCc---eEEEEEECCCCCeEE------ccCC-CCCCCceECCCCCE
Confidence 9887764322 457778888776432 2211 12235689999986
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-13 Score=125.25 Aligned_cols=188 Identities=12% Similarity=0.101 Sum_probs=118.6
Q ss_pred CeeEEEEccCCCE--EE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C--c--EEEEc
Q 013338 101 DLQGVSWHQHKHI--VA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--G--ICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~--la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~--i~vw~ 172 (445)
.+.+-+|||||+. ++ +...++.-.||-.+..+++..... . ..+.....+|||||++|+.++.. | . +.+|+
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-c-CCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 4567899999975 33 333444444444443345433332 2 34455678999999888887642 3 2 33355
Q ss_pred cCCC--CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE--EccC--CC
Q 013338 173 PSYP--GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW--DVAQ--GL 246 (445)
Q Consensus 173 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw--d~~~--~~ 246 (445)
+... +.... ..... .......+|+|||+.|+..+..+|...+| ++.. +.
T Consensus 264 ~~~g~~g~~~~------------------------lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 264 LETGAIGKPRR------------------------LLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred cccCCCCcceE------------------------eecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 5421 11111 11111 12346789999999998877543555555 4432 22
Q ss_pred ceeeecCCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 247 GTPIRRGFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 247 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
...+......+....|+|||++|+..+.+ ..|++||+.+++...+......+..+.|+|||+.|+....
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEEC
Confidence 34444455667889999999999876543 3799999999988766655456778999999999886644
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-12 Score=124.26 Aligned_cols=181 Identities=20% Similarity=0.292 Sum_probs=127.3
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCC--eEEEEeCCCCC
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDG--TFYLWETNTWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg--~v~iwd~~~~~ 287 (445)
..+...+|+|||++|+++...+ ..|++||+.+++...+..+.+.+.+++|+|||+.|+.. +.++ .|++||+.+++
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 4688899999999999887542 37999999988776666666777789999999987644 4443 69999999887
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
...+..+........|+|+|+.|++..+..+ .++.+++. ......+..+. .+..+.|+|+|++
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~--------------~~~~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD--------------GGEVRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEeecCCCCccCeEECCCCCE
Confidence 7666665555667899999999887655433 23333321 12222333333 5778899999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|+.++.++.. ..|.+||+.++... .+... .......|+|||++
T Consensus 336 i~~~~~~~~~---~~i~~~d~~~~~~~------~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 336 IAFVHREGGG---FNIAVMDLDGGGER------VLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred EEEEEccCCc---eEEEEEeCCCCCeE------EccCC-CCCCCceECCCCCE
Confidence 9998776322 47999999875543 12221 23456789999985
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-12 Score=117.86 Aligned_cols=219 Identities=10% Similarity=-0.012 Sum_probs=137.4
Q ss_pred EEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEecC---CcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 123 VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 123 i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
-+||-.+. +|.....++.+ +......|+|||++ ++.++.+ ..|.++|+.++ ....
T Consensus 169 ~~l~~~d~-dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~----------------- 227 (419)
T PRK04043 169 SNIVLADY-TLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEK----------------- 227 (419)
T ss_pred ceEEEECC-CCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEEE-----------------
Confidence 34454432 45555555443 37789999999886 5555543 45777777522 1111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD- 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d- 275 (445)
+... .+......|+|||+.|+.....+ ..|.++|+.++...++..+........|+|||+.|+..+..
T Consensus 228 --------lt~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~ 298 (419)
T PRK04043 228 --------IASS-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL 298 (419)
T ss_pred --------EecC-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCC
Confidence 1111 24556788999999887654322 36888898888777776655545567899999988766642
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCC--------ceEEEEEeccCCCCccccccCccccccc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIV 345 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (445)
+ .|+++|+.+++.+++...... ...|+|||++|+...... ..+..+++ .....+
T Consensus 299 g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~--------------~~g~~~ 362 (419)
T PRK04043 299 GYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST--------------NSDYIR 362 (419)
T ss_pred CCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC--------------CCCCeE
Confidence 2 789999998887555433222 258999999998765432 12333332 222233
Q ss_pred cccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 346 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 346 ~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.+..........|+|||+.|+..+..++. ..+.+.+++....
T Consensus 363 ~LT~~~~~~~p~~SPDG~~I~f~~~~~~~---~~L~~~~l~g~~~ 404 (419)
T PRK04043 363 RLTANGVNQFPRFSSDGGSIMFIKYLGNQ---SALGIIRLNYNKS 404 (419)
T ss_pred ECCCCCCcCCeEECCCCCEEEEEEccCCc---EEEEEEecCCCee
Confidence 33333333468999999999888765443 5688888876443
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-13 Score=108.21 Aligned_cols=190 Identities=14% Similarity=0.184 Sum_probs=140.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+|+++...|...-+++++.|+.+.-||++ +|+..+.+ ++|.+-|.++.-......+++++.||++++||.++.+...
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE--~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLE--DGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEec--CCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE
Confidence 58999999988888888899999999996 47666655 7999999999995555899999999999999999777666
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.+.... -...++.|....|-+++.+ ..++++|+.. .+.+|.++..+...++...+.+..+
T Consensus 193 ~ie~yk----------------~~~~lRp~~g~wigala~~--edWlvCGgGp--~lslwhLrsse~t~vfpipa~v~~v 252 (325)
T KOG0649|consen 193 MIEPYK----------------NPNLLRPDWGKWIGALAVN--EDWLVCGGGP--KLSLWHLRSSESTCVFPIPARVHLV 252 (325)
T ss_pred Eecccc----------------ChhhcCcccCceeEEEecc--CceEEecCCC--ceeEEeccCCCceEEEecccceeEe
Confidence 554331 1223455554567777764 4689888755 6999999999999999989999999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.|. .+.+++++..+.|.-|.+..--............+..|+..--.+++...
T Consensus 253 ~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 253 DFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAG 305 (325)
T ss_pred eee--cceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecc
Confidence 995 55788888888899997755322333333444566666544444444433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-13 Score=113.03 Aligned_cols=158 Identities=19% Similarity=0.370 Sum_probs=106.5
Q ss_pred eEEEECCCCCeEEEEEe---cC------CeEEEEEccCC--Cceeee-cCCCCeeEEEEcCCCCEEEEE--ecCCeEEEE
Q 013338 216 TALSWGPDGRYLASASY---ES------SSFTIWDVAQG--LGTPIR-RGFGGLSILKWSPTGDYFFAA--KFDGTFYLW 281 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~---d~------g~v~vwd~~~~--~~~~~~-~~~~~v~~~~~sp~g~~l~~~--~~dg~v~iw 281 (445)
..+.|+|+|++|++-.. |. |...+|.++.. ....+. ...+.|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988776543 11 34566666432 222222 234579999999999987654 356799999
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS 361 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (445)
|++......+ ....++.+.|+|+|++|++++-+. ..+.+.+|+.. +.+.+.... |..++.++|+||
T Consensus 89 d~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~----------~~~~i~~~~-~~~~t~~~WsPd 154 (194)
T PF08662_consen 89 DVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVR----------KKKKISTFE-HSDATDVEWSPD 154 (194)
T ss_pred cCcccEeEee--cCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECC----------CCEEeeccc-cCcEEEEEEcCC
Confidence 9974333333 345778999999999999876432 23566677653 223333322 336889999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEEccC
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
|++|+++.....-..|+.++||+...
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecC
Confidence 99999987643333458899999964
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-13 Score=129.32 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=161.4
Q ss_pred CeeEEEEcc--CCCEEEEEECCCeEEEEEccCCCCcceeEE--ec-------CCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDACIL--TS-------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp--~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~-------~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.|+.+.+-. |..++++|+.||.|+||+-.....+..... .. +-.+.=.-+.|....++|+++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 477777654 456888999999999997543211211111 11 1111114467888878888888889999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG- 247 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~- 247 (445)
|||.........+.. .....|+++.-+. .|+.+++|..| |.|++||.+....
T Consensus 1191 IWDa~~E~~~~diP~-------------------------~s~t~vTaLS~~~~~gn~i~AGfaD-GsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPY-------------------------GSSTLVTALSADLVHGNIIAAGFAD-GSVRVYDRRMAPPD 1244 (1387)
T ss_pred EEecccceeEeeccc-------------------------CCCccceeecccccCCceEEEeecC-CceEEeecccCCcc
Confidence 999984433333222 1235677765543 46888888888 8999999886543
Q ss_pred ---eeeecCCCC--eeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcccc-c--CC---CCCeeEEEECCCCCeEEEEEc
Q 013338 248 ---TPIRRGFGG--LSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPW-S--ST---SGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 248 ---~~~~~~~~~--v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~-~--~~---~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.....|... |..+.+.+.|- .|++|+.||.|++||++......+ . .| ++..+++..+++...+|+|+.
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 234456555 99999988765 499999999999999998533221 1 22 335899999999999997744
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
..+.++.+...... .+ +.-..+.+.. .+.+++|+|..-+||+|+.| .+|.||....+.
T Consensus 1325 --q~ikIy~~~G~~l~---~~-----k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D------s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 --QLIKIYSLSGEQLN---II-----KYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD------STVSIYSCEKPR 1384 (1387)
T ss_pred --ceEEEEecChhhhc---cc-----ccCcccccCcCCCcceeeecchhHhhhhccCC------ceEEEeecCCcC
Confidence 33444443221100 00 0001122222 58999999999999999777 899999877543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=126.78 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=195.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
.+.-+.+.++.+|++|+.|+..|.+..+|+. +++..+.+. -...|.++.|-.+ ..+++++....+.|||-. +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~--t~~L~~Ei~--v~Etv~Dv~~LHn-eq~~AVAQK~y~yvYD~~-G-- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWV--TKKLHFEIN--VMETVRDVTFLHN-EQFFAVAQKKYVYVYDNN-G-- 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecc--cceeeeeee--hhhhhhhhhhhcc-hHHHHhhhhceEEEecCC-C--
Confidence 4556789999999999999999999999995 455555543 4677999999887 678888889999999965 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v 257 (445)
..++.++.+ ..|..+.|-|---+|++++.. |.++.-|+.+|+.... ....+.+
T Consensus 201 -----------------------tElHClk~~--~~v~rLeFLPyHfLL~~~~~~-G~L~Y~DVS~GklVa~~~t~~G~~ 254 (545)
T KOG1272|consen 201 -----------------------TELHCLKRH--IRVARLEFLPYHFLLVAASEA-GFLKYQDVSTGKLVASIRTGAGRT 254 (545)
T ss_pred -----------------------cEEeehhhc--CchhhhcccchhheeeecccC-CceEEEeechhhhhHHHHccCCcc
Confidence 134455555 589999999987777777777 8999999999988653 3456788
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
..++-+|-...+-+|..+|+|.+|.....+. ..+..|.++|.++++.++|+|++++ +.+..+++|+.+
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTt----G~Dr~~kIWDlR------- 323 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATT----GLDRKVKIWDLR------- 323 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeec----ccccceeEeeec-------
Confidence 8899999998999999999999999988776 6777899999999999999999987 445556666543
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCC--CCCCCceeEee
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGP--GDNPKPVAFSF 413 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~--~~~v~~v~~sp 413 (445)
....+.++....+...+++|..|- || ++.+ ..|.+|.=. .+..-... .+..| ..+|.++.|.|
T Consensus 324 ---~~~ql~t~~tp~~a~~ls~Sqkgl-LA-~~~G------~~v~iw~d~~~~s~~~~~---pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 324 ---NFYQLHTYRTPHPASNLSLSQKGL-LA-LSYG------DHVQIWKDALKGSGHGET---PYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred ---cccccceeecCCCccccccccccc-ee-eecC------CeeeeehhhhcCCCCCCc---chhhhccCcccccceecc
Confidence 222233333322678888887663 33 3444 579999632 21100001 11122 35899999998
Q ss_pred cCCCCCCCeEEEEecCe
Q 013338 414 HDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G 430 (445)
-.. +|.||...|
T Consensus 390 ~ED-----vLGIGH~~G 401 (545)
T KOG1272|consen 390 YED-----VLGIGHAGG 401 (545)
T ss_pred HHH-----eeeccccCC
Confidence 654 467765554
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=126.40 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=167.8
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
..+.+.++.+|++++.++..|.+..+|..+... ...+.. ...|.++.|-.+.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-------------------------~~Ei~v--~Etv~Dv~~LHneq 183 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-------------------------HFEINV--METVRDVTFLHNEQ 183 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee-------------------------eeeeeh--hhhhhhhhhhcchH
Confidence 457799999999999999999999999883322 222222 25788999988888
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEEC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD 304 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~s 304 (445)
++|++- . ..++|||-. |...........|..+.|-|.--+|++++..|.++.-|+.+|+. ..+....+.+..++-+
T Consensus 184 ~~AVAQ-K-~y~yvYD~~-GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 184 FFAVAQ-K-KYVYVYDNN-GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred HHHhhh-h-ceEEEecCC-CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 888874 4 389999954 44444455567899999999998999999999999999999998 4455666778888999
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
|-+..+-+|. ..+.+.+|... ..+++..+-.|. +|.++++.++|+|+||++.| ..++||
T Consensus 261 P~NaVih~Gh----snGtVSlWSP~----------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D------r~~kIW 320 (545)
T KOG1272|consen 261 PYNAVIHLGH----SNGTVSLWSPN----------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD------RKVKIW 320 (545)
T ss_pred CccceEEEcC----CCceEEecCCC----------CcchHHHHHhcCCCcceEEECCCCcEEeecccc------cceeEe
Confidence 9888777773 35788888754 445566666777 99999999999999999988 999999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
|+++-..+ ..+.. .-+.+.++||-.| +|+++|
T Consensus 321 DlR~~~ql-----~t~~t-p~~a~~ls~Sqkg------lLA~~~ 352 (545)
T KOG1272|consen 321 DLRNFYQL-----HTYRT-PHPASNLSLSQKG------LLALSY 352 (545)
T ss_pred eecccccc-----ceeec-CCCcccccccccc------ceeeec
Confidence 99974422 12222 2345678887665 466665
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=116.80 Aligned_cols=219 Identities=11% Similarity=0.095 Sum_probs=153.0
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++|.|+.+++.|+++|.|..+++|+++..-..... +.+.....|+...|.|++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~-------------------KPI~~~~~~H~SNIF~L~F 113 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP-------------------KPIGVMEHPHRSNIFSLEF 113 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-------------------CCceeccCccccceEEEEE
Confidence 479999999999999888888888899999998721111110 1222233344589999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----ccccC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSS 293 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~ 293 (445)
+..++.+++|+.+ |+|.+.|+.+.+.+.+..+. +.|+.+..+|..+.|++.+.++.|.+||.+.... .....
T Consensus 114 ~~~N~~~~SG~~~-~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 114 DLENRFLYSGERW-GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred ccCCeeEecCCCc-ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence 9999999999999 79999999999888877765 4899999999999999999999999999987663 22234
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
.......+.|+|....|+...+..+..+.|++...... ++ .......+.... ...++.|+|+|..|.+.-..
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~----~~--~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~- 265 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP----VY--QRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG- 265 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccch----HH--hhhccccCcccchhhhheeeCCCCCeehhhhcc-
Confidence 55667889999988776655554444555554321110 00 000011122211 34678899999988876544
Q ss_pred CcccceEEEEEEccCCCee
Q 013338 373 DDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~ 391 (445)
..-.+||+-+..+.
T Consensus 266 -----~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 266 -----KCPLYFDFISQRCF 279 (609)
T ss_pred -----CCCEEeeeecccce
Confidence 44567787664443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-12 Score=114.77 Aligned_cols=248 Identities=15% Similarity=0.169 Sum_probs=150.6
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~ 182 (445)
.+.|+|||+++++++.||.|.++|+. +.+.+..+. -.....++++|+||++++++.. .+.+.++|..+.+....+
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~--~~~~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLA--TGKVVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETT--SSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECC--cccEEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 46799999999999999999999995 466666664 3455789999999888877765 599999998854444333
Q ss_pred ccccccccccccCCCCCceEEEEeecc-cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCeeE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSI 259 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v~~ 259 (445)
.... ... ....++.++..+|....++..-.+.|.|.+.|....... ...........
T Consensus 117 ~~~~--------------------~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 117 PTGG--------------------MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp E--E--------------------E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred cccc--------------------ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 3221 100 023578888889988877777676678988898766443 23344567889
Q ss_pred EEEcCCCCEEEEE-ecCCeEEEEeCCCCCccccc-----CCC--------------------------------------
Q 013338 260 LKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWS-----STS-------------------------------------- 295 (445)
Q Consensus 260 ~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~-----~~~-------------------------------------- 295 (445)
..|+|++++++++ ..++.|-++|.++++..... .|.
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchh
Confidence 9999999987664 45668888888765431100 000
Q ss_pred ------------CCeeEEEECCCCCeEEEE---EcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEe
Q 013338 296 ------------GFVTGATWDPEGRMILLA---FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAW 358 (445)
Q Consensus 296 ------------~~v~~~~~sp~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~ 358 (445)
+.-.-+..+|+++++.+. ......+..++.. +.+.+.++.... .+..+.|
T Consensus 257 ~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~-------------tl~~~~~i~~~~~~~~~h~ef 323 (369)
T PF02239_consen 257 YAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK-------------TLKVVKTITPGPGKRVVHMEF 323 (369)
T ss_dssp TBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC-------------GTEEEE-HHHHHT--EEEEEE
T ss_pred hcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc-------------CcceeEEEeccCCCcEeccEE
Confidence 001223567888887766 2333344444432 223333443222 4889999
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
++||+++..+..+.+ +.|.+||..+.++..
T Consensus 324 ~~dG~~v~vS~~~~~----~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 324 NPDGKEVWVSVWDGN----GAIVVYDAKTLKEKK 353 (369)
T ss_dssp -TTSSEEEEEEE--T----TEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEecCC----CEEEEEECCCcEEEE
Confidence 999999888777643 489999999977663
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-11 Score=101.59 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=127.7
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC-CCccccccccccccccccCCCCC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
..+.||| + ...+.+..+ ....+|.++.++++ ++ ++...+.|.||..... +...
T Consensus 75 NkviIWD-D-~k~~~i~el--~f~~~I~~V~l~r~--ri-Vvvl~~~I~VytF~~n~k~l~------------------- 128 (346)
T KOG2111|consen 75 NKVIIWD-D-LKERCIIEL--SFNSEIKAVKLRRD--RI-VVVLENKIYVYTFPDNPKLLH------------------- 128 (346)
T ss_pred ceEEEEe-c-ccCcEEEEE--EeccceeeEEEcCC--eE-EEEecCeEEEEEcCCChhhee-------------------
Confidence 4689999 3 233433433 46789999999987 44 4446788999988621 1111
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCCCCEEEEEecCC
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYFFAAKFDG 276 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg 276 (445)
.+.+... +..+.+++-+.+...||.-+...|.|+|-|+...+. ..+.+|.+.|.|++.+-+|..+|+++..|
T Consensus 129 ---~~et~~N--PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 129 ---VIETRSN--PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred ---eeecccC--CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 1111221 234555555556677887777779999999987665 67788999999999999999999999999
Q ss_pred e-EEEEeCCCCCcc-ccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 277 T-FYLWETNTWTSE-PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 277 ~-v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
+ |||||..+++.. .+. .....|.+++|||+..+|++++ +.+++.++.+.+..
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 6 799999999873 332 3456799999999999999764 44677777776543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-13 Score=111.80 Aligned_cols=187 Identities=14% Similarity=0.187 Sum_probs=135.7
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWT 287 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~-~~~ 287 (445)
.+|+|.+|++|++.++.+-..+ .|.||....... ..+..|...|+.+.|+|..+.|++++.|..-++|... .++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~-evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNH-EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred CceeeeeecCCCceEEeccCCc-eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 6899999999999999998884 999999887662 3455788999999999999999999999999999984 333
Q ss_pred c---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-cccCCC-ccceEEeCCCC
Q 013338 288 S---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 288 ~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~sp~g 362 (445)
- ..+..++...+++.|+|.++.+++++.. ..+.++.+...+ +.-.-+ .-+.+. .|++++|+|++
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~EN----------dWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQEN----------DWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEeccc----------ceehhhhhCCccccceeeeeccCCc
Confidence 3 3455788899999999999999987443 334444443221 110011 111223 69999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEcc-----CC--------CeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDAR-----RT--------PLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~-----~~--------~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
-+|++|+.| +..+||..- .. +...+.+...+....+.|..+.|+|+|.-
T Consensus 159 VLlaaGs~D------~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 159 VLLAAGSTD------GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred ceecccccC------cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 999999988 889998642 11 11111222233345677999999999874
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=109.72 Aligned_cols=269 Identities=12% Similarity=0.154 Sum_probs=168.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-Ccc-eeEEecCC------------CCCeeEEEECcCCC--cEEEEe
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GKD-ACILTSDS------------QRDVKVLEWRPNGG--RSLSVG 163 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-~~~-~~~~~~~~------------~~~v~~l~~spd~~--~l~~~~ 163 (445)
.-|.++.|...|.+||+|..+|.|.++.-+... ++. .....+.| ...|..+.|.++++ .++.++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 357899999999999999999999999764322 110 11122223 35688999988754 467778
Q ss_pred cCCcEEEEccCCCCCccc----cccccccccccccC---CCCC---ceEEEEeecccCCCceeEEEECCCCCeEEEEEec
Q 013338 164 CKGGICIWAPSYPGNAAS----VRSGAASFLGALSR---GPGT---RWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 233 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 233 (445)
.|.+|++|.+...+.... ...+....+..+.. .+-+ ...+.+.+..-|.-.|+++.++.|...++++..-
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 899999999874432220 00010001111000 0000 0113334433334789999999999999887543
Q ss_pred CCeEEEEEccCCC-c---eeeecC-----CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-----cccc------
Q 013338 234 SSSFTIWDVAQGL-G---TPIRRG-----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----EPWS------ 292 (445)
Q Consensus 234 ~g~v~vwd~~~~~-~---~~~~~~-----~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-----~~~~------ 292 (445)
.|.+|++.--. . ..+..+ ..-|++..|+|. .+.++..+..|+|++-|++...+ +.+.
T Consensus 186 --RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 186 --RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred --eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 79999987432 2 222222 245889999996 67788889999999999995432 1111
Q ss_pred ------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC--------------C-
Q 013338 293 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--------------Q- 351 (445)
Q Consensus 293 ------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~- 351 (445)
..-..|..+.|+++|+++++-.- ..+.+|+... ..+++.+++-| .
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-----ltvk~wD~nm---------e~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-----LTVKLWDLNM---------EAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-----ceeEEEeccc---------cCCcceEEeehHhHHHHHHHHhhccch
Confidence 12246788999999999996422 3444454321 22222222221 1
Q ss_pred -ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 352 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 352 -~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.-..++|+-++.++++|+.. +.+++|++..|..
T Consensus 330 fdKFec~~sg~~~~v~TGsy~------n~frvf~~~~gsk 363 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYN------NVFRVFNLARGSK 363 (433)
T ss_pred hheeEEEEcCCcceEeccccc------ceEEEecCCCCcc
Confidence 23567899999999999987 8899999765543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-13 Score=120.09 Aligned_cols=222 Identities=17% Similarity=0.208 Sum_probs=155.3
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eecCCCCeeEEEEcCC--CCEEEEEecCCeE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPT--GDYFFAAKFDGTF 278 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v 278 (445)
+...+.+|. +.|+++.|+.+|.+|++|+.| -.+.|||.-..+... -.+|.+.|.++.|-|. .+.+++|..|..|
T Consensus 42 lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHT-GCVNCLEWNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhcccc-ceecceeecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 445688996 899999999999999999999 599999998666543 3468899999999984 5678899999999
Q ss_pred EEEeCCCCCc-----------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc---c
Q 013338 279 YLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD---I 344 (445)
Q Consensus 279 ~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 344 (445)
++||+...+. ..+.-|...|..++-.|++...+-+++.++.+..+++........ .... +
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p------~~~~~~~l 193 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP------DEDCPSIL 193 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc------cccccHHH
Confidence 9999986332 223467788899999999988777777888888887754211110 1111 1
Q ss_pred ccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccC--------CCeee-----eeeeeeee-CCC-----
Q 013338 345 VSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARR--------TPLIS-----LSLIGFIR-GPG----- 403 (445)
Q Consensus 345 ~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~--------~~~~~-----~~~~~~~~-~~~----- 403 (445)
..+...- ...++.++|.. .+||+|+.| -..++||.+. +.... ..++..+. +|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsd------pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSD------PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCC------chhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 1111222 57889999976 567777776 7899999431 11000 00122221 232
Q ss_pred ------CCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeeccC
Q 013338 404 ------DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL 443 (445)
Q Consensus 404 ------~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~~ 443 (445)
..++-+.|+|+|.- |.+.|+.-.|++|++-...+.
T Consensus 268 n~~~~~~~~t~vtfnpNGtE-----lLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTE-----LLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ccccceeeeEEEEECCCCcE-----EEEeeCCeEEEEEeecCCCCc
Confidence 11466788998763 778899999999988766544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-11 Score=119.14 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=162.0
Q ss_pred CCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc---ceeEEec-CCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 100 VDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK---DACILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
..|..++.++. +.++++|+.||+|++|+.....+. ....++. .....+..+.+.+.+..+++++.||.|++.+++
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 35667777665 599999999999999998643332 1122222 256789999999998899999999999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE-EEECC-CCC-eEEEEEecCCeEEEEEccCCCceeee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGP-DGR-YLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-~~~-~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
......... .+.+....+..+.+.. -+|.. .+. .++++... +.|..||++........
T Consensus 1129 ~~~~~~~~~------------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~-~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1129 HYNVSKRVA------------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL-SRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred cccccccee------------------eeeecccccCCCceEEeecccccccceeEEEEEec-cceEEecchhhhhHHhh
Confidence 431111111 1122222232233333 34443 233 56666666 69999999876553322
Q ss_pred ---cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCC---CeEEEEEcCCceEEEE
Q 013338 252 ---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEG---RMILLAFAGSLTLGSI 323 (445)
Q Consensus 252 ---~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~---~~l~~~~~~~~~~~~~ 323 (445)
...+.|++++.+|.+.+++.|+..|.+.+||++=+... ...++..+++.+..+|-- ...++++.. ....+
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~--~~nev 1267 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS--SNNEV 1267 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc--CCCce
Confidence 34689999999999999999999999999999987763 223455778877776643 345544331 23344
Q ss_pred EeccCCCCcc-ccccCccccc-cccc-------cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 324 HFASKPPSLD-AHLLPVDLPD-IVSL-------TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~~~~-~~~~-------~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+|+...... ..+|..+... +... +.+. .....++..-+..+.+|+.| ..|+.||....+..
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd------~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD------MKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc------cceeeccCCCcccc
Confidence 4444322211 1112111111 0000 0112 23333444445678888777 89999999865543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-12 Score=115.49 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=140.0
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCC--cce-eEEecCCCCCeeEEEE-----CcCCCcEEEEecCCcEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG--KDA-CILTSDSQRDVKVLEW-----RPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~--~~~-~~~~~~~~~~v~~l~~-----spd~~~l~~~~~dg~i~vw~ 172 (445)
.+....++-.|++|+..- ...+.+|+....+. +.+ +... ......+-+| .|.+-.++++-.-|.+.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y--~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREY--KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcc--cCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 355666666788887643 44578888752111 111 1111 1122334444 35555677776778898888
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-------
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG------- 245 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~------- 245 (445)
... .....+.. .-+...+..|+++.|-|.+..++.+..-+|.+.+||..-.
T Consensus 202 p~~-~~~sklfn---------------------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 202 PIN-FEVSKLFN---------------------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred chh-hHHHHhhh---------------------hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 763 11111111 1111123689999999966555544444489999976321
Q ss_pred -------Cc---------------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEE
Q 013338 246 -------LG---------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGAT 302 (445)
Q Consensus 246 -------~~---------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~ 302 (445)
.. .......+.|+..+|+|||++||+.+.||.++|||..+.++. .+...-+...|++
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC 339 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence 00 111123457899999999999999999999999999998773 3334456789999
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA 360 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 360 (445)
|||||++|++++.+ -.+.+|... ..+.+..-.+|. +|+.|+|+|
T Consensus 340 WSPDGKyIvtGGED----DLVtVwSf~----------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGED----DLVTVWSFE----------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCc----ceEEEEEec----------cceEEEeccccccceeeEeecc
Confidence 99999999988543 344455332 445566777888 999999985
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=98.15 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=147.3
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-C------CcEEEEccC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K------GGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-d------g~i~vw~~~ 174 (445)
..+++|+.|..-+++|..+| .+||+.+.-........ ....-.+.-+-|-. +.++.+|. . +.+.|||=.
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-IDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-ccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecc
Confidence 44699999999999887766 68999864211111111 11112233333333 34444443 2 579999932
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-Cceeeec-
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR- 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~- 252 (445)
.. .++.++.- ..+|.++.++++ .|++.- . +.|.||...+. +......
T Consensus 84 -k~------------------------~~i~el~f--~~~I~~V~l~r~--riVvvl-~-~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 84 -KE------------------------RCIIELSF--NSEIKAVKLRRD--RIVVVL-E-NKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred -cC------------------------cEEEEEEe--ccceeeEEEcCC--eEEEEe-c-CeEEEEEcCCChhheeeeec
Confidence 11 12333332 268999999875 566554 4 38999998743 3333222
Q ss_pred --CCCCeeEEEEcCCCCEEEE-EecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 253 --GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 253 --~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
....+.+++-+.+...||. |-.-|.|+|-|+...+. ..+..|...|.+++.+.+|..+|+++....-+++++..
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 2333333332223334443 34468999999988766 56679999999999999999999887665555555432
Q ss_pred cCCCCccccccCccccccccccC---CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTG---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++..+.++.- +..|++++|||+..+||++|.- |+|.||.++.
T Consensus 213 -------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK------gTlHiF~l~~ 257 (346)
T KOG2111|consen 213 -------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK------GTLHIFSLRD 257 (346)
T ss_pred -------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC------CeEEEEEeec
Confidence 4444444432 3379999999999999998876 9999999875
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-10 Score=105.61 Aligned_cols=287 Identities=15% Similarity=0.130 Sum_probs=167.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-----ecC-----CcEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-----GCK-----GGIC 169 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-----~~d-----g~i~ 169 (445)
.+++..++|++|+++|.+ .+..++|++... +..+.+. ... .++++.|+|-|.+|.+- -.+ -.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~--~~~~lt~--~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIAT--LKVVLCV--ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccC--CcEEEEe--ccc-eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 347889999999999975 567788998753 3222222 123 78999999997766541 122 3577
Q ss_pred EEccCCCCCccccc-------cccccccccccCCCCCceEEEEe---ec----ccCCCceeEEEECCCCCeEEEEE----
Q 013338 170 IWAPSYPGNAASVR-------SGAASFLGALSRGPGTRWTLVDF---LR----SQNGEQITALSWGPDGRYLASAS---- 231 (445)
Q Consensus 170 vw~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~v~~~~~sp~~~~l~~~~---- 231 (445)
+|++.+......+. ...++.+..+...-......... ++ .-+...++.+.+||.+..-..+-
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99988622211111 11111111111111010001100 11 11255677888888777777653
Q ss_pred ---ecCCeEEEEEccCCCceeeec----CCCCeeEEEEcCCCCEE-EEEec--C---------CeEEEEeCCCCCccccc
Q 013338 232 ---YESSSFTIWDVAQGLGTPIRR----GFGGLSILKWSPTGDYF-FAAKF--D---------GTFYLWETNTWTSEPWS 292 (445)
Q Consensus 232 ---~d~g~v~vwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l-~~~~~--d---------g~v~iwd~~~~~~~~~~ 292 (445)
.- +.|+||............ ....-..+.|++-|.-| +.++. | .+++++++.+..+..-.
T Consensus 189 ~kGaP-a~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L 267 (566)
T KOG2315|consen 189 KKGAP-ASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL 267 (566)
T ss_pred CCCCC-cEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence 23 378888776332221111 12333457888877643 32222 3 36888888844443333
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
...++|.++.|+|+++-++++.+-. -..+.+.+. ....+..+. .++=+++-|+|.|++|+.++-++
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnl-----------r~~~v~df~-egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNL-----------RGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecc--cceEEEEcC-----------CCCEeEeCC-CCCccceEECCCCCEEEEeecCC
Confidence 4578999999999999887664321 112222221 333333321 12467889999999999998876
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
-. |.+.|||+.+.+++. .+.. ..-+-+.|+|||+|
T Consensus 334 L~---G~mEvwDv~n~K~i~-----~~~a--~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 334 LP---GDMEVWDVPNRKLIA-----KFKA--ANTTVFEWSPDGEY 368 (566)
T ss_pred CC---CceEEEeccchhhcc-----cccc--CCceEEEEcCCCcE
Confidence 44 999999999866652 2222 23456899999998
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=107.42 Aligned_cols=261 Identities=12% Similarity=0.085 Sum_probs=168.0
Q ss_pred CCeeEEEEccCC--CEEEEEECCCeEEEEEccCCCCcceeE-----EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEc
Q 013338 100 VDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSEGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 100 ~~v~~~~~sp~g--~~la~~~~d~~i~iw~~~~~~~~~~~~-----~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~ 172 (445)
..|.+++|.-++ ..+...+.+..+..+.+.. ...... .......+|..++... ..|+++-.+|.+.+|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E--~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEE--FEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccC--CccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEe
Confidence 357788887665 3444444666666666543 211111 1123455676666553 5788888899999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE-EEEEec--CCeEEEEEccCCCcee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYE--SSSFTIWDVAQGLGTP 249 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d--~g~v~vwd~~~~~~~~ 249 (445)
...+..-.. ....+..+ ..+..+.-++....| ++|+.. + .+.+||+.+.+.+.
T Consensus 132 ~k~~d~hss---------------------~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n-~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 132 DKSGDLHSS---------------------KLIKLATG--PGLYDVRQTDTDPYIVATGGKENIN-ELKIWDLEQSKQIW 187 (412)
T ss_pred ccCCccccc---------------------cceeeecC--CceeeeccCCCCCceEecCchhccc-ceeeeecccceeee
Confidence 873321100 01112222 456666666655554 457666 4 79999999873321
Q ss_pred eec----------CCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 250 IRR----------GFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 250 ~~~----------~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.-. -.-.++++.|-+. ...|++++.-+.|++||.+.+.. ..+.-...+++++...|.+++|+++.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn- 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN- 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-
Confidence 111 0124678889887 78899999999999999997664 44556678899999999999999763
Q ss_pred CCceEEEEEeccCCCCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
..+.+..+++. ..+.... +.+-. .|+++..+|.+++||+++-| ..|||+|+++.+++..
T Consensus 267 ~~g~l~~FD~r-------------~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD------RyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 267 TKGQLAKFDLR-------------GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD------RYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccchhheeccc-------------CceeeccccCCccCCcceEEEcCCCceEEeeccc------eeEEEeecccchhhhh
Confidence 22334444432 2222222 45545 79999999999999999988 9999999999766532
Q ss_pred eeeeeeeCCCCCCCceeEeec
Q 013338 394 SLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spd 414 (445)
..+ ...++++-+.++
T Consensus 328 vYv------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 328 VYV------KSRLTFILLRDD 342 (412)
T ss_pred hhh------hccccEEEecCC
Confidence 111 234566766554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=109.67 Aligned_cols=252 Identities=14% Similarity=0.232 Sum_probs=159.7
Q ss_pred EcceeeeeccCcchhhhhhhccccceeecccCCCCCcccCCCCCcchhcccccccCccccccccccccccccccccCCCc
Q 013338 15 INRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHV 94 (445)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 94 (445)
-+.|+|++.+++-.+...+.|+.+|+| +-|+.+.... ..-......+.|..+ +.--.
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRV---v~f~r~~~~~--------------~ey~~~t~fqshepE------FDYLk 79 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRV---VLFEREKLYK--------------GEYNFQTEFQSHEPE------FDYLK 79 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeE---EEeecccccc--------------cceeeeeeeeccCcc------cchhh
Confidence 357899999999989999999999998 3333333222 012333445555433 11122
Q ss_pred CCcCcCCeeEEEEccCCC--EEEEEECCCeEEEEEccCCCCcc---------------------------------eeEE
Q 013338 95 HLLPEVDLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSEGKD---------------------------------ACIL 139 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~--~la~~~~d~~i~iw~~~~~~~~~---------------------------------~~~~ 139 (445)
.+..+..|..+.|.+++. .++..+.|.+|++|.+.....+. .+..
T Consensus 80 SleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~ 159 (433)
T KOG1354|consen 80 SLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY 159 (433)
T ss_pred hhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec
Confidence 233345789999998763 45557799999999886432221 1122
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC----CCce
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQI 215 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v 215 (445)
...|.--|++++++.| ...+.++.|=.|.+|+++...+.-. .++ ++.++ ..-|
T Consensus 160 aNaHtyhiNSIS~NsD-~Et~lSADdLRINLWnlei~d~sFn---------------------IVD-IKP~nmEeLteVI 216 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSD-KETFLSADDLRINLWNLEIIDQSFN---------------------IVD-IKPANMEELTEVI 216 (433)
T ss_pred cccceeEeeeeeecCc-cceEeeccceeeeeccccccCCcee---------------------EEE-ccccCHHHHHHHH
Confidence 3357888999999999 4555566788999999984332221 111 12221 1357
Q ss_pred eEEEECCC-CCeEEEEEecCCeEEEEEccCCCc----eeeec-------------CCCCeeEEEEcCCCCEEEEEecCCe
Q 013338 216 TALSWGPD-GRYLASASYESSSFTIWDVAQGLG----TPIRR-------------GFGGLSILKWSPTGDYFFAAKFDGT 277 (445)
Q Consensus 216 ~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~dg~ 277 (445)
++..|+|. ...++..+.. |+|++-|++.... ..++. --..|.++.|+++|+++++-.. -+
T Consensus 217 TsaEFhp~~cn~f~YSSSK-GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSK-GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred hhhccCHhHccEEEEecCC-CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 88899994 4556666666 8999999985422 11111 1146889999999999987643 58
Q ss_pred EEEEeCCCCC--cccccCC------------CCC---eeEEEECCCCCeEEEEE
Q 013338 278 FYLWETNTWT--SEPWSST------------SGF---VTGATWDPEGRMILLAF 314 (445)
Q Consensus 278 v~iwd~~~~~--~~~~~~~------------~~~---v~~~~~sp~~~~l~~~~ 314 (445)
|++||+.... +..+..| +.. -..++|+.++.++++|+
T Consensus 295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 9999985322 2222211 122 24578999999998773
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-10 Score=106.63 Aligned_cols=182 Identities=11% Similarity=0.086 Sum_probs=121.9
Q ss_pred ceeEEEECCCCCe-EEEEEec--CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-c--CCeEEEEeCCCCC
Q 013338 214 QITALSWGPDGRY-LASASYE--SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-F--DGTFYLWETNTWT 287 (445)
Q Consensus 214 ~v~~~~~sp~~~~-l~~~~~d--~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~--dg~v~iwd~~~~~ 287 (445)
......|+|||+. ++..+.+ +..|.++|+.+++...+....+......|+|||+.|+... . +..|+++|+.+++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678999999985 6655554 2479999999998887777667777889999998876443 2 3579999999888
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 365 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 365 (445)
..++..+........|+|||+.|+...+..+ .++.+++. ....+.+.... .....|||||++|
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------------~g~~~rlt~~g-~~~~~~SPDG~~I 333 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN--------------SGSVEQVVFHG-KNNSSVSTYKNYI 333 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEeCccCC-CcCceECCCCCEE
Confidence 7777655544456789999999987765433 23333331 22222222111 1234899999999
Q ss_pred EEEEcCCCccc---ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 366 AVSYKGGDDIY---KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 366 ~~~s~d~~d~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+..+...+..+ ...|.+.|+.++.... +... .......|||||++
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~------LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRR------LTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEE------CCCC-CCcCCeEECCCCCE
Confidence 98876432111 1368888998876542 2221 22346899999985
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-11 Score=107.48 Aligned_cols=269 Identities=13% Similarity=0.077 Sum_probs=173.4
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.-+.|..+|||+++. +|...-.|++||+....-+..+.+ ....|...-.+-|-...+..-.|.+|.+...- +..
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl---Dae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~h- 127 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL---DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH- 127 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc---cccceeEEEeccchhhheEeecCceeeehhhc-Cee-
Confidence 457899999998764 667889999999964322211111 23455555666666667777777777664432 000
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~ 258 (445)
..++-. ..-..++++.-..-|++++... .|+-+++..|....-+ ...+.++
T Consensus 128 -------------------------y~~RIP--~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN 179 (703)
T KOG2321|consen 128 -------------------------YRTRIP--KFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELN 179 (703)
T ss_pred -------------------------eeeecC--cCCccccccCCCccEEEeecCc-ceEEEEccccccccccccccccce
Confidence 001111 2234555554333344444442 7999999998765443 3458899
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-------cccCCC-----CCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTS-----GFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~-----~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++..++-..+|++|+.+|.|..||.+..... .+..+. ..|+++.|+.+|-.+++|.+. +.+..+++.
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-G~v~iyDLR 258 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-GSVLIYDLR 258 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC-CcEEEEEcc
Confidence 9999999999999999999999999986541 112232 349999999999888877543 445555543
Q ss_pred cCCCCccccccCccccccccccCCC---ccceEEeCCC--CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~--g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
. ..++ ..+.|. +|..+.|.+. +..+++. |. ..++|||-.+|+... .+ .
T Consensus 259 a-------------~~pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk-----~~~kiWd~~~Gk~~a-----si-E 311 (703)
T KOG2321|consen 259 A-------------SKPL-LVKDHGYELPIKKLDWQDTDQQNKVVSM--DK-----RILKIWDECTGKPMA-----SI-E 311 (703)
T ss_pred c-------------CCce-eecccCCccceeeecccccCCCceEEec--ch-----HHhhhcccccCCcee-----ec-c
Confidence 2 1222 123343 7999999876 4556554 43 789999999988762 22 2
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
....++.+++-|++- ++-.+.+++.+..|
T Consensus 312 pt~~lND~C~~p~sG-----m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 312 PTSDLNDFCFVPGSG-----MFFTANESSKMHTY 340 (703)
T ss_pred ccCCcCceeeecCCc-----eEEEecCCCcceeE
Confidence 345689999988854 46667777777544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-13 Score=124.66 Aligned_cols=262 Identities=14% Similarity=0.132 Sum_probs=184.0
Q ss_pred cccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 74 FSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 74 ~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
+..|.||-..+|+.++......+..+. .|+.++.+.+..++|+++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 456779988888887776655554432 48888888889999999999999999984
Q ss_pred CCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc
Q 013338 130 DSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS 209 (445)
Q Consensus 130 ~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (445)
++..+..+ .+|.+.|++++|+|-- +++.||++++||.+......... .+..
T Consensus 263 --~~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~pr----------------------p~~~ 313 (1113)
T KOG0644|consen 263 --DGAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPR----------------------PLKF 313 (1113)
T ss_pred --CCchHHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccCCC----------------------CCCc
Confidence 46655544 6899999999999973 66778999999987211110000 0111
Q ss_pred cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc
Q 013338 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 210 ~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
..+..+.++.|-..+..+++++.+ +.-..|....-.. +...+.-+..+.+ ..+.+++-.+-.+.+|++.++.+
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d-~ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRD-GEARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred ccccceeeeeccccccccccccCC-cccccchhhHhhh-----hccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 123567777787888889999988 6887776543221 1112222222222 24556666778899999999987
Q ss_pred -ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-cccCCCccceEEeCCCCCEEE
Q 013338 289 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 289 -~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~ 366 (445)
..+.+|...+..+.++|-+..++.....++...+|++|.. .+++ ...+|..+.+-+||+||..++
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-------------~pik~y~~gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-------------IPIKHYFIGHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccC-------------CcceeeecccceeeccccCCCCceEe
Confidence 5567899999999999999988877777788888888753 2222 224566888899999999887
Q ss_pred EEEcCCCcccceEEEEEEccCCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
..-.- |.++|.....++
T Consensus 455 lsd~h------gql~i~g~gqs~ 471 (1113)
T KOG0644|consen 455 LSDDH------GQLYILGTGQSK 471 (1113)
T ss_pred cCCCC------CceEEeccCCCc
Confidence 65333 788888765443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-09 Score=97.52 Aligned_cols=278 Identities=13% Similarity=0.084 Sum_probs=152.1
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEEccCCCCCcccccccccccc
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
++|.+.|.+ +.+.+..+..+.. ...+ +|||++.++++.. +..|.+||..+......+..+..
T Consensus 27 ~~v~ViD~~--~~~v~g~i~~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~--- 98 (352)
T TIGR02658 27 TQVYTIDGE--AGRVLGMTDGGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG--- 98 (352)
T ss_pred ceEEEEECC--CCEEEEEEEccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---
Confidence 788999875 3655565554433 3335 9999988888776 48999999985554444332210
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l 269 (445)
-+.........++++|||++|++...+ ...|.+.|+.+++......-.+...-...+.+...
T Consensus 99 ----------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~- 161 (352)
T TIGR02658 99 ----------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF- 161 (352)
T ss_pred ----------------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE-
Confidence 000001234578999999999988744 46999999999877654443332222222222211
Q ss_pred EEEecCCeEEEEeCCC-CCc----ccc-cCCCCCe-eEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 270 FAAKFDGTFYLWETNT-WTS----EPW-SSTSGFV-TGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~-~~~----~~~-~~~~~~v-~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
+-+.||......+.+ ++. ..+ .....++ ....|.+ +|++++++.. +.+..+++........ ..+..
T Consensus 162 -~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~-~~~~~-- 235 (352)
T TIGR02658 162 -MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFL-PAIEA-- 235 (352)
T ss_pred -EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceec-ceeee--
Confidence 112233333322221 111 011 0100000 1114455 8888887755 6677777543211100 00000
Q ss_pred ccccccc-C--CCccceEEeCCCCCEEEEEEcCCC----cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 342 PDIVSLT-G--SQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 342 ~~~~~~~-~--~~~v~~~~~sp~g~~l~~~s~d~~----d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......+ + ..++.-++++|+++++++....+. ..-.+.|.++|..+++.+. .+. -+..+..++++||
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~-----~i~-vG~~~~~iavS~D 309 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR-----KIE-LGHEIDSINVSQD 309 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE-----EEe-CCCceeeEEECCC
Confidence 0000000 0 013455999999999998542211 0011579999999988763 222 1457889999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|+. .++.....+|.|.+++..
T Consensus 310 gkp---~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 310 AKP---LLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCe---EEEEeCCCCCcEEEEECc
Confidence 983 134444467878887753
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-10 Score=103.66 Aligned_cols=290 Identities=13% Similarity=0.164 Sum_probs=176.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------C-CcEEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------K-GGICI 170 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------d-g~i~v 170 (445)
=+-+.|||-|.+|++--..| |.+|--+ +-..+..+ .|. .|..+.|||..++|++-+. + ..++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~--~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGE--SFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCc--cHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 46789999999999876655 7789632 12222333 365 4899999999888877543 1 57999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
||+.++.....+.. ++... ..-.-+.||.|++++|--..+ .|.||+...-.....
T Consensus 287 WDI~tG~lkrsF~~----------------------~~~~~-~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf~lld~ 341 (698)
T KOG2314|consen 287 WDIATGLLKRSFPV----------------------IKSPY-LKWPIFRWSHDDKYFARMTGN--SISIYETPSFMLLDK 341 (698)
T ss_pred EEccccchhcceec----------------------cCCCc-cccceEEeccCCceeEEeccc--eEEEEecCceeeecc
Confidence 99995543332221 11111 222356899999999987765 799998766433222
Q ss_pred ec-CCCCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCc-----
Q 013338 251 RR-GFGGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL----- 318 (445)
Q Consensus 251 ~~-~~~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~----- 318 (445)
.. .-..|....|+|.++.||.=... ..+.+..+.+++..+.. -++-.=..+-|-.+|.+|++-.+...
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence 22 23678899999999988754332 25677777665543222 12222234678889999886433211
Q ss_pred -eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 319 -TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
....+.+..... ..-++..+.-...|...+|-|.|..+++.+..... .++.+|.+++... ...++.
T Consensus 422 g~f~n~eIfrire---------KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k---~tvsfY~~e~~~~-~~~lVk 488 (698)
T KOG2314|consen 422 GQFSNLEIFRIRE---------KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK---NTVSFYAVETNIK-KPSLVK 488 (698)
T ss_pred ceEeeEEEEEeec---------cCCCceeeecchheeeeeeccCCCeEEEEEccccc---cceeEEEeecCCC-chhhhh
Confidence 111122111100 11122222223368999999999988877644332 7899999884211 123343
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.+.. ...+.+.|||.|+|...+ +...-.|.+.||+..+
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva--~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVA--ALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEE--EecccccceEEEecch
Confidence 4432 456899999999984221 1222589999999886
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=111.97 Aligned_cols=271 Identities=15% Similarity=0.217 Sum_probs=176.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc------------eeEEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD------------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
....|++|+....+||+|+.||.+++..+++.+... ......+|...|.-+.|+.+.++|-++..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999886532211 11223589999999999998677766667899
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
|.+|-+-.+.-.... +...+++-|.+++|+.||+.|+..-.| |.|.+=.+..++.
T Consensus 95 IiVWmlykgsW~EEM------------------------iNnRnKSvV~SmsWn~dG~kIcIvYeD-GavIVGsvdGNRI 149 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEM------------------------INNRNKSVVVSMSWNLDGTKICIVYED-GAVIVGSVDGNRI 149 (1189)
T ss_pred EEEEeeecccHHHHH------------------------hhCcCccEEEEEEEcCCCcEEEEEEcc-CCEEEEeecccee
Confidence 999998633221111 111234678999999999999999888 7888877765533
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc------------cCCCCCeeEEEEC--------CCC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW------------SSTSGFVTGATWD--------PEG 307 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~v~~~~~s--------p~~ 307 (445)
--..-.......+.|++|.+.++.+-.+|.+.+||....-..++ ...+..+-.+.|. |+.
T Consensus 150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 11111123345789999999999888999999999876432211 1222335555553 577
Q ss_pred CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCccc--c-eEEEEEE
Q 013338 308 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY--K-GLIAIYD 384 (445)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~--d-~~i~vwd 384 (445)
..++++... +.....+-.+ +..++- +...-.+..+.|+++|..||.++.+.+... | +.|.+|.
T Consensus 230 P~lavcy~n-Gr~QiMR~eN------------D~~Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 230 PRLAVCYAN-GRMQIMRSEN------------DPEPVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred CEEEEEEcC-ceehhhhhcC------------CCCCeE-EecccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 778777543 2222222111 111111 111126889999999999999987654211 1 3555555
Q ss_pred ccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 385 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
.- |++ +++++..+..|++++|--.|
T Consensus 296 p~-G~i-----~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 296 PY-GHI-----VGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred cc-hhh-----eEEEecCCceeeeeEEcCCc
Confidence 32 222 35666677788888885443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-10 Score=98.41 Aligned_cols=170 Identities=15% Similarity=0.263 Sum_probs=131.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC-cEEEEccCCCCCcccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
+|.++|..|. |...|.+.. .+ ..+..+|.+.|.-..+.-++..++.+..|| .+-|++....
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~--~~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~------------ 392 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPW--DG---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG------------ 392 (668)
T ss_pred CCcEEEEEec-CcEEEECCC--CC---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc------------
Confidence 6788888764 555565532 23 233356888899999998888888888886 8999998822
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCC
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGD 267 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~ 267 (445)
.++.+...- +.|.++..+|+|+.++.+... ..+.+.|+.++....+... .+-|+.+.|||+++
T Consensus 393 --------------e~kr~e~~l-g~I~av~vs~dGK~~vvaNdr-~el~vididngnv~~idkS~~~lItdf~~~~nsr 456 (668)
T COG4946 393 --------------EVKRIEKDL-GNIEAVKVSPDGKKVVVANDR-FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSR 456 (668)
T ss_pred --------------eEEEeeCCc-cceEEEEEcCCCcEEEEEcCc-eEEEEEEecCCCeeEecccccceeEEEEEcCCce
Confidence 122233332 789999999999999988766 7999999999988666544 57899999999999
Q ss_pred EEEEEecCC----eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEE
Q 013338 268 YFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 268 ~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
++|.+--+| .|+++|+.+++........+.=.+.+|.|++++|..-
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 999887766 7999999999886665555566678999999988754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=101.09 Aligned_cols=192 Identities=10% Similarity=0.075 Sum_probs=137.5
Q ss_pred EEEEEECCCeEEEEEccCCC--CcceeEEecCCCCCeeEEEECcCCCcEEE-EecC--CcEEEEccCCCCCccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSE--GKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCK--GGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~l~~spd~~~l~~-~~~d--g~i~vw~~~~~~~~~~~~~~~~ 187 (445)
.|++|-.+|.+.+|....++ ...+..+ .....+..+.-++....+++ +|.. ..+.|||+.... .+.+...
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aKN 191 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK---QIWSAKN 191 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccce---eeeeccC
Confidence 56677899999999986433 2222222 23456778888887777877 4555 789999998442 2211110
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCc-e-eeecCCCCeeEEEEc
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG-T-PIRRGFGGLSILKWS 263 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~-~-~~~~~~~~v~~~~~s 263 (445)
.+. +.+.-...-.++++.|-+. ...|+++..- +.+++||.+.++. . .+.-....++++...
T Consensus 192 vpn--------------D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 192 VPN--------------DRLGLRVPVWITDIRFLEGSPNYKFATITRY-HQVRLYDTRHQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred CCC--------------ccccceeeeeeccceecCCCCCceEEEEecc-eeEEEecCcccCcceeEeccccCcceeeeec
Confidence 000 0011111235678888876 7889999988 6999999997654 2 233347889999999
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 264 PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 264 p~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
|.++++++|..-+.+..||+++++. ..+.+..+.++++..+|.+++++++ +-++.+++.+.
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~----GLDRyvRIhD~ 319 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC----GLDRYVRIHDI 319 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee----ccceeEEEeec
Confidence 9999999999999999999999988 3477889999999999999999987 55677777654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-09 Score=96.75 Aligned_cols=313 Identities=14% Similarity=0.077 Sum_probs=182.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-------------
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------------- 165 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d------------- 165 (445)
..++..++|||.|++|++.... .|.+|.-.. ...+..+ .| ..|..+.|+|.+.+|.+-...
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~--~~~l~~~--~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAA-GVECWGGPS--KAKLVRF--RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred CcchhheeecCcchheehhhcc-ceEEccccc--hhheeee--ec-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 3478899999999999976544 478898643 2222333 24 459999999997777664332
Q ss_pred --CcEEEEccCCCCCcccccccccc----ccccccCC-------CCCceEEEE---eeccc-----CCCceeEEEECCCC
Q 013338 166 --GGICIWAPSYPGNAASVRSGAAS----FLGALSRG-------PGTRWTLVD---FLRSQ-----NGEQITALSWGPDG 224 (445)
Q Consensus 166 --g~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~---~~~~~-----~~~~v~~~~~sp~~ 224 (445)
+.+.+||+..+............ ++..++.. -........ .+..| ....+....|+|.+
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 35899998844322211111000 00000000 000011111 01111 12467888899964
Q ss_pred C--eEEEE-----EecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEEEEe-----------cCCeEEEEeCCC
Q 013338 225 R--YLASA-----SYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK-----------FDGTFYLWETNT 285 (445)
Q Consensus 225 ~--~l~~~-----~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~-----------~dg~v~iwd~~~ 285 (445)
+ .|++- +.. +++++|.+..+........ +..-..+.|++.|++|++-- ....++|+++..
T Consensus 186 n~~~la~~tPEk~~kp-a~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKP-AMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCC-cEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 3 34443 334 5899999886655433322 23334688999999876431 124689999986
Q ss_pred CCcccccCCCCCeeEEEECCCCCeEEEEE-cCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE
Q 013338 286 WTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 364 (445)
Q Consensus 286 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 364 (445)
..+.......++|...+|.|.++.+++.. -....+....+ .++ +.-+-....=+.+.|+|.+++
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l--------------r~N-l~~~~Pe~~rNT~~fsp~~r~ 329 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL--------------RGN-LRFYFPEQKRNTIFFSPHERY 329 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeeccc--------------ccc-eEEecCCcccccccccCcccE
Confidence 65544446688999999999998887654 33333333332 222 111111123467889999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE-EecCeeeEeeeeeeecc
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~-~~~~G~v~~~~~~~~~~ 442 (445)
++.++-|+-. |.+.+||......+ +..+.+ ...+-+.|||||+|....+-+= --.|..|.+|++.-.++
T Consensus 330 il~agF~nl~---gni~i~~~~~rf~~----~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 330 ILFAGFDNLQ---GNIEIFDPAGRFKV----AGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEEecCCccc---cceEEeccCCceEE----EEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 9998887655 89999999875444 223333 2345678999999832111000 01356677787775554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-09 Score=97.52 Aligned_cols=228 Identities=18% Similarity=0.172 Sum_probs=154.2
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE-ecC-------CCCCeeEEE-ECcCCCcEEEEecCCcEEEEcc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-TSD-------SQRDVKVLE-WRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~-~~~-------~~~~v~~l~-~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+-..+.||+.++. +..|.|.+||.++..-+.+..- ... ...+..-+. |++-.+.+++.-+.|...|.+.
T Consensus 270 Y~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 270 YPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred cccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence 34445778999886 4678899998764322221110 000 011122222 4544445555556677777665
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
...-. ++-.+...|.-..+.-+++-++.|..|+-.+-|||..+++...+...
T Consensus 349 ~~~~~----------------------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 349 WDGYS----------------------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred CCCee----------------------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 41111 11112367888888888888888888833999999999998888888
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
-+.|.+++.+|+|++++++.....+.++|+++++.+.+. ...+-|+.+.|+|+++++|.+....-....+++.+.
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm---- 476 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM---- 476 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec----
Confidence 899999999999999999999999999999999986554 455679999999999999998765544555665543
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEc
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
.+..+-..+... .=.+.+|.|||++|..-+.
T Consensus 477 -------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 477 -------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred -------CCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 222222222222 3456789999999887664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-10 Score=110.10 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=163.4
Q ss_pred CCcceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeeccc
Q 013338 132 EGKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ 210 (445)
Q Consensus 132 ~~~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (445)
+|..+..+ ..|...|..++.++.. ..+++++.||+|++|+...-.... ...+...++...
T Consensus 1037 ~G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------------~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1037 RGILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------------GSARSELTYSPE 1097 (1431)
T ss_pred cceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------------------ceeeeeEEEecc
Confidence 35555544 4688889999988765 677777788999999987221110 111223333322
Q ss_pred CCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-------eee--cCCCCeeEE-EEcC-CCC-EEEEEecCCeE
Q 013338 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------PIR--RGFGGLSIL-KWSP-TGD-YFFAAKFDGTF 278 (445)
Q Consensus 211 ~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-------~~~--~~~~~v~~~-~~sp-~g~-~l~~~~~dg~v 278 (445)
..++.++..-+.+..+|+++.| |.|++.++...... ... ...+.+.++ ++.. .+. .|+.+...+.|
T Consensus 1098 -~sr~~~vt~~~~~~~~Av~t~D-G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1098 -GSRVEKVTMCGNGDQFAVSTKD-GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred -CCceEEEEeccCCCeEEEEcCC-CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 3689999999999999999988 89999998763211 111 122334333 3433 233 67888889999
Q ss_pred EEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc--CCCcc
Q 013338 279 YLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGI 353 (445)
Q Consensus 279 ~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 353 (445)
..||+++... .+.....+.|++++.+|.+.++++|... +.+.+|+.+-. .++..+. .+.++
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~----G~l~lWDLRF~----------~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR----GQLVLWDLRFR----------VPILSWEHPARAPI 1241 (1431)
T ss_pred EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC----ceEEEEEeecC----------ceeecccCcccCCc
Confidence 9999998665 2333556789999999999999988543 44555654321 1222222 22367
Q ss_pred ceEEeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe--------ec-------C
Q 013338 354 EKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS--------FH-------D 415 (445)
Q Consensus 354 ~~~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s--------pd-------g 415 (445)
..+..+|- ....++++..+. +-|.+|++.+|........ + ..+..+.+. |+ +
T Consensus 1242 ~~v~~~~~~~~~S~~vs~~~~~~----nevs~wn~~~g~~~~vl~~----s--~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQESVSVSAGSSSN----NEVSTWNMETGLRQTVLWA----S--DGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred ceEEeeccCCCCceEEEecccCC----CceeeeecccCcceEEEEc----C--CCCcchhhhcccccCCCCCcccceeee
Confidence 77777663 356666655222 7799999998755422111 1 111111111 11 1
Q ss_pred CCCCCCeEEEEecCeeeEeeeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
--...+++..|-++++|..|+...+
T Consensus 1312 ~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCceeeecCCccceeeccCCCc
Confidence 1134567778889999998886543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-09 Score=92.92 Aligned_cols=239 Identities=12% Similarity=0.004 Sum_probs=139.5
Q ss_pred EccCCCEEEEEEC----------CCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEec--CCcE
Q 013338 107 WHQHKHIVAFISG----------STQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--KGGI 168 (445)
Q Consensus 107 ~sp~g~~la~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~--dg~i 168 (445)
+||||+.|+.+.. +..|.+||.. +.+....+..+. ......++++|||+.+++... +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 9999998887655 7899999985 465555554321 122347899999888877663 5899
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+.|+...+....+.... +...+.. ..-..+..+.||+.+.....+.|+...=. .
T Consensus 131 ~VvD~~~~kvv~ei~vp~----------------~~~vy~t---~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~------~ 185 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPD----------------CYHIFPT---ANDTFFMHCRDGSLAKVGYGTKGNPKIKP------T 185 (352)
T ss_pred EEEECCCCcEEEEEeCCC----------------CcEEEEe---cCCccEEEeecCceEEEEecCCCceEEee------e
Confidence 999998555444433220 0000110 11112233345555444433333422100 1
Q ss_pred eeecC-CCCe-eEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc-----ccc--------CCCCCeeEEEECCCCCeEEE
Q 013338 249 PIRRG-FGGL-SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-----PWS--------STSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 249 ~~~~~-~~~v-~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~--------~~~~~v~~~~~sp~~~~l~~ 312 (445)
.++.. ...+ ..-.|.+ +|+++.+..+ |+|++.|+...+.. .+. -..+...-++++++++.+++
T Consensus 186 ~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence 11111 0000 0014455 7888777766 99999997554331 111 12233445999999999988
Q ss_pred EEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCcccceEEEE
Q 013338 313 AFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 313 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~v 382 (445)
...+ ...+..++.. +.+.+..+.....+..++++|||+ +|++..... +.|.+
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~-------------t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsV 326 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAK-------------TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYI 326 (352)
T ss_pred EecCCccccccCCCCEEEEEECC-------------CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEE
Confidence 5321 1345555532 444555555444789999999999 777766432 77999
Q ss_pred EEccCCCee
Q 013338 383 YDARRTPLI 391 (445)
Q Consensus 383 wd~~~~~~~ 391 (445)
+|..+++.+
T Consensus 327 iD~~t~k~i 335 (352)
T TIGR02658 327 FDAETGKEL 335 (352)
T ss_pred EECcCCeEE
Confidence 999988776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-09 Score=97.02 Aligned_cols=244 Identities=17% Similarity=0.197 Sum_probs=155.4
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCC-CcEEEE------ecCCcEEEEccCC
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG-GRSLSV------GCKGGICIWAPSY 175 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~-~~l~~~------~~dg~i~vw~~~~ 175 (445)
++..|+.|..+.|- -..+.+.+|+... .+.+... -|...|+.+.+||.+ ...+++ |.-..++||....
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~--f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGS--FKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCC--ccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 58889998876553 2456799999854 2222222 267889999999973 334443 2236799998873
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE-EE--ecC--------CeEEEEEccC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS-AS--YES--------SSFTIWDVAQ 244 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~--~d~--------g~v~vwd~~~ 244 (445)
.+.-..+... ..++ ..=..+.|++-|+-|+. ++ -|+ .++++.+++.
T Consensus 204 ~~~~~~~a~k-------------------sFFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 204 EGQHQPVANK-------------------SFFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred ccccchhhhc-------------------cccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 3222211111 0011 12245678876654322 22 121 2678888774
Q ss_pred CCceeeecCCCCeeEEEEcCCCCEEEE--EecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 245 GLGTPIRRGFGGLSILKWSPTGDYFFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 245 ~~~~~~~~~~~~v~~~~~sp~g~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
..+..-....++|.++.|+|+|+.+++ |-+-..+.|||++..-... -..++-+++-|+|.|++|+.++-+. .-+.
T Consensus 261 ~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~d--f~egpRN~~~fnp~g~ii~lAGFGN-L~G~ 337 (566)
T KOG2315|consen 261 ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFD--FPEGPRNTAFFNPHGNIILLAGFGN-LPGD 337 (566)
T ss_pred ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEe--CCCCCccceEECCCCCEEEEeecCC-CCCc
Confidence 444434445799999999999988764 5567789999998754332 2345667899999999999775443 4567
Q ss_pred EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+.+|+.. +.+.+..+... .-+-+.|+|||++++++.....-..|+.++||++...
T Consensus 338 mEvwDv~----------n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 338 MEVWDVP----------NRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred eEEEecc----------chhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 7777653 33344443332 4567889999999999987655455689999998753
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=110.63 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=145.4
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
.|....+.-+..+++.+..++.+.+||.........+.... +.. -....-+.++++.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e---------------------r~~-l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE---------------------RCT-LYSSLIIGDSAEEL 146 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc---------------------eEE-EEeEEEEeccCcEE
Confidence 34445555565788888889999999987433333322210 000 01222334567777
Q ss_pred eEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEE
Q 013338 226 YLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGAT 302 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~ 302 (445)
++++|+-- |.|.+|+....+. ..+.+|.+.+.++.|+-||+++++.++|.++++|++++.+.. ...+|...+..++
T Consensus 147 ~i~~gsv~-~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 147 YIASGSVF-GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEecccc-ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 88898888 6999999874333 457889999999999999999999999999999999998873 5668999999999
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
|.|+ .++++ +.+...++|+. +...+..+.+|. .+..++..++...+++++.| +.+
T Consensus 226 ~~~n--~i~t~----gedctcrvW~~-----------~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D------s~l 282 (967)
T KOG0974|consen 226 FLPN--RIITV----GEDCTCRVWGV-----------NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGND------STL 282 (967)
T ss_pred eccc--eeEEe----ccceEEEEEec-----------ccceehhhhhhhhcceeEEEEcCCceEEEeeccC------cch
Confidence 9998 66655 23455555533 455566788888 79999999999899998877 899
Q ss_pred EEEEccC
Q 013338 381 AIYDARR 387 (445)
Q Consensus 381 ~vwd~~~ 387 (445)
++|++..
T Consensus 283 k~~~l~~ 289 (967)
T KOG0974|consen 283 KLWDLNG 289 (967)
T ss_pred hhhhhhc
Confidence 9999864
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-09 Score=94.62 Aligned_cols=270 Identities=16% Similarity=0.222 Sum_probs=157.5
Q ss_pred CeeEEEEccCCCEEEEEE-----------CCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 101 DLQGVSWHQHKHIVAFIS-----------GSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----------~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
.|.-+.|||+.++|++=+ ....+.|||+. +|...+.+.. +....-.-..||.|++ +++.-....
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~--tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA--TGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTGNS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc--ccchhcceeccCCCccccceEEeccCCc-eeEEeccce
Confidence 599999999999999855 22578999995 5766655532 2222233568999954 445444467
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceE---------------E--------EEeecccCCCceeEEEECCCC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT---------------L--------VDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--------~~~~~~~~~~~v~~~~~sp~~ 224 (445)
|.||+... -.+....+...+.+..+++++..... + +++-.-++ -.-..+.|-.+|
T Consensus 328 isIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~g 405 (698)
T KOG2314|consen 328 ISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSG 405 (698)
T ss_pred EEEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee-eeccEEEeccCC
Confidence 88887662 11111112222223334444333211 1 11111111 112245666777
Q ss_pred CeEEEEEecC------C---eEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCC-Cc-c
Q 013338 225 RYLASASYES------S---SFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTW-TS-E 289 (445)
Q Consensus 225 ~~l~~~~~d~------g---~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~-~~-~ 289 (445)
.+|+.--... | .+.|+.++.... .........|...+|-|.|+.+++-+. ..++.+|.+.+. .. .
T Consensus 406 dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 406 DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 7776532110 1 345565554433 333445678999999999998876554 347899988742 22 1
Q ss_pred ccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc--cccccCCCccceEEeCCCCCEEE
Q 013338 290 PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD--IVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 290 ~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
.+. -.....+.+.|+|.|++++++.-.+ .-+.+.+.+. +... ......|...+.+.|.|.|+|++
T Consensus 486 lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~-----------~~a~~k~~~~~eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDT-----------DYADLKDTASPEHFAATEVEWDPTGRYVV 553 (698)
T ss_pred hhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEec-----------chhhhhhccCccccccccceECCCCCEEE
Confidence 111 2235678899999999999775432 3344444432 1111 11223344789999999999999
Q ss_pred EEEcCCCcccceEEEEEEccC
Q 013338 367 VSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++.-...+.|.--++|+.+.
T Consensus 554 T~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 554 TSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EeeehhhhccccceEEEEeec
Confidence 998765444456778888774
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=99.57 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=133.8
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEEC------c-------------CCCcEEE-EecCC
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWR------P-------------NGGRSLS-VGCKG 166 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~s------p-------------d~~~l~~-~~~dg 166 (445)
|-+.++|....||.++||+... ++....+. ..-.+...+..|. | .+..+++ +...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~--~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK--NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccC--ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4567899999999999999864 33222221 1223344555552 2 1123333 34458
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
.|.+|++..++-...+ ..+.+.+.|.++.++.+-..|.+++.| +.+..|+.....
T Consensus 81 ~v~~ys~~~g~it~~~------------------------st~~h~~~v~~~~~~~~~~ciyS~~ad-~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKL------------------------STDKHYGNVNEILDAQRLGCIYSVGAD-LKVVYILEKEKV 135 (541)
T ss_pred cEEEEEecCCeEEEEE------------------------ecCCCCCcceeeecccccCceEecCCc-eeEEEEecccce
Confidence 8999988733222222 212335899999999999999999999 699999999887
Q ss_pred ceeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCC-----CCeEEEEEcCCce
Q 013338 247 GTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-----GRMILLAFAGSLT 319 (445)
Q Consensus 247 ~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~-----~~~l~~~~~~~~~ 319 (445)
...... ....+.+++.+|||+.+++++ ++|++||+++++. +.+.+|.++|++++|.-+ |.+++++...+..
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 766544 467889999999999999886 6899999999998 788999999999999877 7888866544443
Q ss_pred EEEEEe
Q 013338 320 LGSIHF 325 (445)
Q Consensus 320 ~~~~~~ 325 (445)
+..|.+
T Consensus 214 i~~w~v 219 (541)
T KOG4547|consen 214 ITVWVV 219 (541)
T ss_pred eeEEEE
Confidence 444443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-08 Score=103.46 Aligned_cols=263 Identities=12% Similarity=0.078 Sum_probs=146.6
Q ss_pred eEEEEccC-CCEEEEEECCCeEEEEEccCCCCcceeEEec-C------------CCCCeeEEEECcCCCcEEEEec-CCc
Q 013338 103 QGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACILTS-D------------SQRDVKVLEWRPNGGRSLSVGC-KGG 167 (445)
Q Consensus 103 ~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~------------~~~~v~~l~~spd~~~l~~~~~-dg~ 167 (445)
..++++++ +.++++-+..+.|++++.+ +.....+.. + .-.....++++++++.++++.. .+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~---G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD---GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC---CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46888875 5666666788889999864 443332211 1 1123678999998766666554 478
Q ss_pred EEEEccCCCCCcccccc-ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 168 ICIWAPSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
|+++|.... ....+.. +.... ....+... ....-.....++++|++..++++...++.|++||..++.
T Consensus 648 Ir~id~~~~-~V~tlag~G~~g~--~~~gg~~~--------~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 648 LREIDFVNE-TVRTLAGNGTKGS--DYQGGKKG--------TSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEecCCC-EEEEEeccCcccC--CCCCChhh--------hHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 888887632 1111111 00000 00000000 000012346899999555554444333699999987765
Q ss_pred ceeeec---------------CCCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCCccccc--------------C---
Q 013338 247 GTPIRR---------------GFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS--------------S--- 293 (445)
Q Consensus 247 ~~~~~~---------------~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~--------------~--- 293 (445)
...+.. .-.....++++|+++.|+ +-+.++.|++||+.++....+. .
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 432211 113456799999998554 5556789999999876532110 0
Q ss_pred -----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc----cccccCCC-ccceEEeCCCCC
Q 013338 294 -----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD----IVSLTGSQ-GIEKIAWDASGE 363 (445)
Q Consensus 294 -----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~v~~~~~sp~g~ 363 (445)
.-.....++++++|+.++ +...+..+..++..... ...+.. .+.. -....+.. ....++++++|+
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYV-ADs~N~rIrviD~~tg~---v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYV-ADSYNHKIKKLDPATKR---VTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGR 871 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEE-EECCCCEEEEEECCCCe---EEEEec-cCCcCCCCCcccccccCCceEEEEeCCCC
Confidence 011346889999998544 54455556665542211 000000 0000 00011112 578899999998
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.+++-+.+ ++|++||+.+++.
T Consensus 872 lyVaDt~N------n~Irvid~~~~~~ 892 (1057)
T PLN02919 872 LFVADTNN------SLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCC------CEEEEEECCCCcc
Confidence 76665444 8999999998765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-08 Score=105.02 Aligned_cols=266 Identities=12% Similarity=0.095 Sum_probs=154.5
Q ss_pred eEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccc-ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 148 KVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 148 ~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
..++++++++.++++.. ++.|++||... .....+.. +.. + .. ++. +....-.....++++++++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~---G-~~---dG~------~~~a~f~~P~GIavd~~gn 636 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEE---G-LR---DGS------FEDATFNRPQGLAYNAKKN 636 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCc---C-CC---CCc------hhccccCCCcEEEEeCCCC
Confidence 46888876565665544 58899998762 21111111 000 0 00 000 0000113467899999988
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecC-----------------CCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRG-----------------FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----------------~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
.|+++...+..|+++|+.++....+... -.....++++| ++..+++...++.|++||..++.
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 8877766546899999887755443211 12356899999 45666777778999999998765
Q ss_pred cccccC---------------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc----
Q 013338 288 SEPWSS---------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---- 348 (445)
Q Consensus 288 ~~~~~~---------------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 348 (445)
...+.+ .-.....++++|+++.|+++...+..+..+++.....................+.
T Consensus 717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 432211 1124567999999998887776666777776532210000000000000000000
Q ss_pred ----C-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee--------eeCCCCCCCceeEeecC
Q 013338 349 ----G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--------IRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 349 ----~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~v~~v~~spdg 415 (445)
. .....+++++++|+.+++-+.+ ++|++||..++.+....-.+. ..+.-.....++++++|
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 0 1135789999999876665544 899999998776542111100 11122356789999988
Q ss_pred CCCCCCeEEEEecCeeeEeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ ++.....+++|.++++.
T Consensus 871 ~-----lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 871 R-----LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred C-----EEEEECCCCEEEEEECC
Confidence 6 46667788899888764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-08 Score=100.53 Aligned_cols=292 Identities=13% Similarity=0.222 Sum_probs=165.3
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
....|.++.+-++...++.+..+|.|.+...+.............-...|.+++||||+..++.+..++++.+.+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~--- 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD--- 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc---
Confidence 34679999999999999999999999998222111111122222356789999999998888888888888776543
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccC----CCceeEEEECCCCCeEEEEEecCCeEE-EEEccCCC--ceee
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRYLASASYESSSFT-IWDVAQGL--GTPI 250 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~g~v~-vwd~~~~~--~~~~ 250 (445)
|..+....-+. ...--++-|-.....+ =|+..+-.-+ +-|....+ ...+
T Consensus 151 -----------------------fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa~~~~~p~~~~~d~~~~ 206 (928)
T PF04762_consen 151 -----------------------FDPISEVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAARQLRDPTVPKVDEGKL 206 (928)
T ss_pred -----------------------ceEEEEeecCccccCCCceeeeccCcccCcc-CcchhhhhhhhccCCCCCccccCcc
Confidence 11111111000 0111222232211111 0000000000 00000000 0011
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEec---C---CeEEEEeCCCCCccc-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKF---D---GTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~---d---g~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
. ....-..++|-.||.++|+.+. . ..++||+.+ |++.. ...-.+--.+++|.|.|++||+....... ..+
T Consensus 207 s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~-~~V 283 (928)
T PF04762_consen 207 S-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR-HDV 283 (928)
T ss_pred c-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC-cEE
Confidence 1 3345667999999999998765 2 479999987 44422 22223334578999999999977543222 444
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-C
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-G 401 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~ 401 (445)
-++.++.-... +-.-.+.... .|..++|++|+..||....+ .|.+|-..+-... +-+.+. .
T Consensus 284 vFfErNGLrhg-------eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-------~vqLWt~~NYHWY---LKqei~~~ 346 (928)
T PF04762_consen 284 VFFERNGLRHG-------EFTLRFDPEEEKVIELAWNSDSEILAVWLED-------RVQLWTRSNYHWY---LKQEIRFS 346 (928)
T ss_pred EEEecCCcEee-------eEecCCCCCCceeeEEEECCCCCEEEEEecC-------CceEEEeeCCEEE---EEEEEEcc
Confidence 44433221110 0011111222 68999999999999997754 5999998875443 223333 2
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
....+..+.|+|...+ .|.+...+|.+..+.+.+.
T Consensus 347 ~~~~~~~~~Wdpe~p~----~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPL----RLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred CCCCCCceEECCCCCC----EEEEEecCCcEEEEEEEEE
Confidence 3344566999997443 4667767788877766654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-10 Score=98.53 Aligned_cols=256 Identities=11% Similarity=0.095 Sum_probs=164.6
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..|.+.|+.+.|+..|..+++++.|..|.+||.........+. .+|. ..|....|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~------------------------SGH~-~NvfQaKF 193 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE------------------------SGHC-NNVFQAKF 193 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc------------------------cccc-cchhhhhc
Confidence 5799999999999998888888888999999998544433333 3454 56766778
Q ss_pred CC--CCCeEEEEEecCCeEEEEEccC-CCc---eeeecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCccc---
Q 013338 221 GP--DGRYLASASYESSSFTIWDVAQ-GLG---TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP--- 290 (445)
Q Consensus 221 sp--~~~~l~~~~~d~g~v~vwd~~~-~~~---~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~--- 290 (445)
-| +.+.|++++.| |.|++=.+.. +.+ ..+..|.+.|.-++.-|+. ..|.+++.|+.+.-+|++......
T Consensus 194 iP~s~d~ti~~~s~d-gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 194 IPFSGDRTIVTSSRD-GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred cCCCCCcCceecccc-CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence 77 45678999999 7999877653 322 3456789999999999975 458899999999999999876521
Q ss_pred -ccCCCC---CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc-CccccccccccC--CCccceEEeCCCCC
Q 013338 291 -WSSTSG---FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL-PVDLPDIVSLTG--SQGIEKIAWDASGE 363 (445)
Q Consensus 291 -~~~~~~---~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~v~~~~~sp~g~ 363 (445)
...+.. ....++..|...+.+..+.. +...++++.+.......- .+..-+...+.. +..|++++|+.++.
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~---dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRNTNEFAVGGS---DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeccCCccceeeeeEecCCCCccccccCCh---hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 112223 46788999987754433222 333333332211000000 001111111111 22799999998876
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCe---ee----eeeeee-eeCCCC--CCCceeE-eecCCCCCCCeEEEEecCeee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPL---IS----LSLIGF-IRGPGD--NPKPVAF-SFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~---~~----~~~~~~-~~~~~~--~v~~v~~-spdg~~~~~~~l~~~~~~G~v 432 (445)
-|.++..| -.|+++.-..+.- .. ...+.. ++||.. .|..+-| -|...| +.-|.+.|+|
T Consensus 350 ElLaSYnD------e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-----VvSGSDCGhI 418 (559)
T KOG1334|consen 350 ELLASYND------EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-----VVSGSDCGHI 418 (559)
T ss_pred ceeeeecc------cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-----EEecCccceE
Confidence 66666666 6799996543221 00 011223 678753 4777765 465555 6678889999
Q ss_pred Eeee
Q 013338 433 CTYP 436 (445)
Q Consensus 433 ~~~~ 436 (445)
.+|+
T Consensus 419 FiW~ 422 (559)
T KOG1334|consen 419 FIWD 422 (559)
T ss_pred EEEe
Confidence 9886
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.8e-09 Score=92.31 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=157.2
Q ss_pred CCeeEEEEccCCCEEEEEECC---------------CeEEEEEccCCCCcceeEEecCCCCC--ee-EEEECcCCCcEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGS---------------TQVIVRDYEDSEGKDACILTSDSQRD--VK-VLEWRPNGGRSLS 161 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---------------~~i~iw~~~~~~~~~~~~~~~~~~~~--v~-~l~~spd~~~l~~ 161 (445)
..|..+.|||.+++|.+=+.. ..+.+||.. ++..+..+. .-..+ .+ -+.|+-+..+.+-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~--sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA--SGMIVFSFN-GISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc--CceeEeecc-ccCCcccccceeeeeecchhhhh
Confidence 468999999999999985532 358899984 455444432 22222 33 6788888544333
Q ss_pred EecCCcEEEEccCCCCCccccccccccccccccCCCC--Cc---------------eEEEEe-----ecccC--CCceeE
Q 013338 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG--TR---------------WTLVDF-----LRSQN--GEQITA 217 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~-----~~~~~--~~~v~~ 217 (445)
. ....+.|+++...-....+.......+..++..+. .. ..++.. +..++ ...=..
T Consensus 149 v-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 149 V-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred h-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3 44568888863111111111111111111111111 00 001100 00000 011235
Q ss_pred EEECCCCCeEEEEEecC----------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCC
Q 013338 218 LSWGPDGRYLASASYES----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA--KFDGTFYLWETNT 285 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~----------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~--~~dg~v~iwd~~~ 285 (445)
+.|++.|++|++--..+ ..+.++++............+.|.+.+|.|.++.+++. -++..+.++|++.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 78889888876532110 25788888754443333568999999999998887654 4688999999998
Q ss_pred CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEE
Q 013338 286 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 365 (445)
Q Consensus 286 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 365 (445)
. .........=+.+.|+|.++++++++-+ ..-+.+.+++... ....+..+.+. ..+-+.|+|||+++
T Consensus 308 N--l~~~~Pe~~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~---------rf~~~~~~~~~-n~s~~~wspd~qF~ 374 (561)
T COG5354 308 N--LRFYFPEQKRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAG---------RFKVAGAFNGL-NTSYCDWSPDGQFY 374 (561)
T ss_pred c--eEEecCCcccccccccCcccEEEEecCC-ccccceEEeccCC---------ceEEEEEeecC-CceEeeccCCceEE
Confidence 7 2233333444568899999999976432 3345555554321 11222222222 34556799999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+.....-...|+.+.|||+...+
T Consensus 375 ~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 375 DTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EecCCCcccccCcceEEEEecCch
Confidence 887654444557999999997643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-09 Score=90.67 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=130.3
Q ss_pred ccccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEE
Q 013338 71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVL 150 (445)
Q Consensus 71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l 150 (445)
..+...++||...+ ++...-|-..-+.+.+.|.+++||--. ..++.-..+......+++++
T Consensus 14 p~ll~~~eG~~d~v------------------n~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~wpsI~~~mP~~~~~~ 74 (404)
T KOG1409|consen 14 PELLSKIEGSQDDV------------------NAAILIPKEEGVISVSEDRTVRVWLKR-DSGQYWPSIYHYMPSPCSAM 74 (404)
T ss_pred hhhhhhhcCchhhh------------------hhheeccCCCCeEEccccceeeeEEec-cccccCchhhhhCCCCceEe
Confidence 34556677776553 334444445567888999999999643 24544444544567889999
Q ss_pred EECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE
Q 013338 151 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 230 (445)
Q Consensus 151 ~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 230 (445)
.+.++..+|+.+-..|++.-+.+...-+... ..+....|. ..+..+.|+-..+++++.
T Consensus 75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~---------------------~~r~~~~h~-~~v~~~if~~~~e~V~s~ 132 (404)
T KOG1409|consen 75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMT---------------------FLKDYLAHQ-ARVSAIVFSLTHEWVLST 132 (404)
T ss_pred eeeccceEEEEEEecceEEEEEhhhhhhhcc---------------------hhhhhhhhh-cceeeEEecCCceeEEEe
Confidence 9999966666666669888877652211111 111111221 233333333222333332
Q ss_pred Eec--------------------------------------CCeEEEEEccCCC---ceeeecCCCCeeEEEEcCCCCEE
Q 013338 231 SYE--------------------------------------SSSFTIWDVAQGL---GTPIRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 231 ~~d--------------------------------------~g~v~vwd~~~~~---~~~~~~~~~~v~~~~~sp~g~~l 269 (445)
+.| .|.|.+-.+.... ...+.+|.+.+.+++|.|..+.|
T Consensus 133 ~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 133 GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 222 1344333333222 24456788999999999999999
Q ss_pred EEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 270 FAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
++|..|..+.+||+-..+. ..+.+|...|..+...+--+.+.++ +.++.+-.|++
T Consensus 213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~-~edg~i~~w~m 269 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC-GEDGGIVVWNM 269 (404)
T ss_pred EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec-cCCCeEEEEec
Confidence 9999999999999976655 4566888888888777666666643 44454544443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-09 Score=88.17 Aligned_cols=245 Identities=12% Similarity=0.086 Sum_probs=149.9
Q ss_pred CCeeEEEEcc---CCC-EEEEEECCCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 100 VDLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 100 ~~v~~~~~sp---~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
..+..+.|+. +|. .++-+..+|.|.++..+.... ...+ .+- .....++.|++.+..++++-.+|.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s--s~~L-~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES--SVHL-RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeecccee--eeee-cccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 3466677763 455 455567888999887643211 1111 111 11245778898888877777778887
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc-
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG- 247 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~- 247 (445)
+-+... . ........+.|. ..++...|+. +.+.+++|+.| |.+..||++....
T Consensus 147 ~v~~t~-~----------------------~le~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD-~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 147 GVYETE-M----------------------VLEKVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDD-GSLSCWDIRIPKTF 201 (339)
T ss_pred EEecce-e----------------------eeeecccccccc-eeeeeeecccCCCceEEecCCC-ceEEEEEecCCcce
Confidence 444330 0 111233567775 7888888876 44677888877 7999999994332
Q ss_pred --eeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC--eEEEEEcCCceEE
Q 013338 248 --TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--MILLAFAGSLTLG 321 (445)
Q Consensus 248 --~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~--~l~~~~~~~~~~~ 321 (445)
.....|...|.++.-+| .+.+|++|+.|..|++||.++... ..-....+.|..+.++|.-. .++++.-+ ...
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~--G~k 279 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN--GAK 279 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc--Cce
Confidence 22345788999999886 588999999999999999996443 33334557899999999654 33333222 234
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEE-EEEccC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA-IYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~-vwd~~~ 387 (445)
++++.+..... .......+.|. -++.-.|......||+++. ||..++ +|-.-+
T Consensus 280 i~~~~~~~~e~--------~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF-----YDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 280 ILDSSDKVLEF--------QIVLPSDKIHDSLCYGGDWDSKDSFLATCSF-----YDKKIRQLWLHIT 334 (339)
T ss_pred EEEecccccch--------heeeeccccccceeeccccccccceeeeeec-----cccceeeeeeecc
Confidence 44443321100 00122334444 4555666555567888763 446655 776544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-09 Score=95.72 Aligned_cols=193 Identities=7% Similarity=0.074 Sum_probs=136.3
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
.-.+++++.-.--|+.++....|.-++++.+.-... +... .+.++++..++-..
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P-------------------------~~~~-~~~lN~v~in~~hg 188 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNP-------------------------FETD-SGELNVVSINEEHG 188 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEccccccccc-------------------------cccc-cccceeeeecCccc
Confidence 345666654445577777777777777773333322 2222 27899999999988
Q ss_pred eEEEEEecCCeEEEEEccCCCceeee-------cCC-----CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIR-------RGF-----GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~-------~~~-----~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 293 (445)
+|++|+.+ |.|..||.+........ .+. ..|+++.|+.+|-.+++|+.+|.|.|||+++.+......
T Consensus 189 Lla~Gt~~-g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 189 LLACGTED-GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred eEEecccC-ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 99999888 79999999876543222 122 349999999889999999999999999999998866665
Q ss_pred CC--CCeeEEEECCC--CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEE
Q 013338 294 TS--GFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 369 (445)
Q Consensus 294 ~~--~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s 369 (445)
|. .+|..+.|.+. +..+++. + -..+++|+.. +++....+.....++.+++-|++-+++++.
T Consensus 268 h~~e~pi~~l~~~~~~~q~~v~S~-D----k~~~kiWd~~----------~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 268 HGYELPIKKLDWQDTDQQNKVVSM-D----KRILKIWDEC----------TGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred cCCccceeeecccccCCCceEEec-c----hHHhhhcccc----------cCCceeeccccCCcCceeeecCCceEEEec
Confidence 54 46788899765 3455543 2 3556677653 455555555545799999999999999987
Q ss_pred cCCCcccceEEEEEEcc
Q 013338 370 KGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~ 386 (445)
.+ ..+..|=+.
T Consensus 333 e~------~~m~~yyiP 343 (703)
T KOG2321|consen 333 ES------SKMHTYYIP 343 (703)
T ss_pred CC------CcceeEEcc
Confidence 66 455555443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-09 Score=95.46 Aligned_cols=165 Identities=15% Similarity=0.166 Sum_probs=122.1
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeec----CCCCeeEEEE------cC--------------CCCEEEEEecCCe
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKW------SP--------------TGDYFFAAKFDGT 277 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----~~~~v~~~~~------sp--------------~g~~l~~~~~dg~ 277 (445)
|...++|....| |.+++|+...++...-+. ..+..++..| +| +...++-|...|.
T Consensus 3 ~~~~~~A~~~~~-g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGD-GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCC-CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 455678888888 899999999887644332 2333344444 22 2336778888999
Q ss_pred EEEEeCCCCCcc-cc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-cc
Q 013338 278 FYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GI 353 (445)
Q Consensus 278 v~iwd~~~~~~~-~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 353 (445)
|.+|++..++.. .+ ..|.+.|+++.++.+-..|.++ +. +..+..|... ....++.++... .+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~a---d~~v~~~~~~----------~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GA---DLKVVYILEK----------EKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CC---ceeEEEEecc----------cceeeeeeccCCCcc
Confidence 999999999883 23 3788999999999888888865 33 3444444332 334455555555 78
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.+++.+|||+.|++++ +.|++||+++++++ .++.||.++|++++|--+
T Consensus 148 ~sl~is~D~~~l~~as--------~~ik~~~~~~kevv-----~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 148 SSLCISPDGKILLTAS--------RQIKVLDIETKEVV-----ITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ceEEEcCCCCEEEecc--------ceEEEEEccCceEE-----EEecCCCcceEEEEEEEe
Confidence 9999999999999987 67999999998876 489999999999999877
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=102.11 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=163.9
Q ss_pred CeeEEEEccCC---CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g---~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~vw~~~~~ 176 (445)
.|..+.|+|.. .++++ .......+|++..+....+.....+|...|+.+.|+|+...++++ +-|-.+..||++..
T Consensus 69 ~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEe-cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 46778888754 34554 444555689998887777777888999999999999987666555 45899999999844
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCc--eeeecC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--TPIRRG 253 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~ 253 (445)
..+... ...-+ .....++|+- ++..+++ +.. ..|++||++.|.. ..+..|
T Consensus 148 ~~p~ys------------------------~~~w~-s~asqVkwnyk~p~vlas-shg-~~i~vwd~r~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 148 HRPFYS------------------------TSSWR-SAASQVKWNYKDPNVLAS-SHG-NDIFVWDLRKGSTPLCSLKGH 200 (1081)
T ss_pred Ccceee------------------------eeccc-ccCceeeecccCcchhhh-ccC-CceEEEeccCCCcceEEeccc
Confidence 332211 11111 4667889987 4444554 444 3799999997754 345567
Q ss_pred CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 254 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 254 ~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
-..|+.++|..- ...+++++.|++|+.||...... ........++....+-|-|+-.++--...+. .+.+.....
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n--~v~~~~c~n 278 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN--MVPQLRCEN 278 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCe--eeeeccccc
Confidence 788888888753 44688999999999999987554 3444566678888888866544322111111 222222111
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCC----------EEEEEEcCCCcccceEEEEEEccC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE----------RLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~----------~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.....-.-....++.++.||. .|..+-|-..+. .|++-|.| ..+++|-+.+
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD------~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD------QTLRLWPIDS 340 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC------CceEeeeccH
Confidence 000000001345678899998 777777754322 58888888 8999998763
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=105.40 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=124.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..-+.++++.-++++|+.-+.|.+|.+. .+.... ...+|.+.|.++.|+-||+++++++.|..+++|.+++.....
T Consensus 136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~-~dn~p~--~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~- 211 (967)
T KOG0974|consen 136 SLIIGDSAEELYIASGSVFGEIIVWKPH-EDNKPI--RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG- 211 (967)
T ss_pred EEEEeccCcEEEEEeccccccEEEEecc-ccCCcc--eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence 3445567888899999999999999986 333322 346899999999999999999999999999999999544432
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEE
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSIL 260 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~ 260 (445)
...-+|. .+|+.+.|.|+ .+++++.|. +.++|+.+..+...+..| ...+..+
T Consensus 212 -----------------------~~~fgHs-aRvw~~~~~~n--~i~t~gedc-tcrvW~~~~~~l~~y~~h~g~~iw~~ 264 (967)
T KOG0974|consen 212 -----------------------CTGFGHS-ARVWACCFLPN--RIITVGEDC-TCRVWGVNGTQLEVYDEHSGKGIWKI 264 (967)
T ss_pred -----------------------ccccccc-ceeEEEEeccc--eeEEeccce-EEEEEecccceehhhhhhhhcceeEE
Confidence 1234565 89999999998 899999994 999998776666656666 4679999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCC
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~ 285 (445)
+..++...+++++.|+.+++||+..
T Consensus 265 ~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 265 AVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999999999999999864
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-07 Score=79.01 Aligned_cols=237 Identities=13% Similarity=0.157 Sum_probs=128.7
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 105 ~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
++.+.+|++||.. .|..|.|-.....=... .+.+.......-+-++||||+..|+.+.+.|+|++||+.. .....+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5678899999864 67888887654321222 2233333344568899999977777777789999999872 222222
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC------CCeEEEEEecCCeEEEEEccCCCc-----e---
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLG-----T--- 248 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~g~v~vwd~~~~~~-----~--- 248 (445)
.... + ..+.-...|..+.|-+- ...|++..+. |.++-|-+..+.. .
T Consensus 81 ~p~~-~------------------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-G~L~Sy~vs~gt~q~y~e~hsf 140 (282)
T PF15492_consen 81 PPAM-S------------------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-GQLRSYLVSVGTNQGYQENHSF 140 (282)
T ss_pred Cccc-c------------------cCCccccceeeeEeeccccccccceeEEEEecc-ceeeeEEEEcccCCcceeeEEE
Confidence 2110 0 00111234555555331 2246666777 7888877643321 1
Q ss_pred eeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEE--EEEcCCc-----eE
Q 013338 249 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL--LAFAGSL-----TL 320 (445)
Q Consensus 249 ~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~~~~-----~~ 320 (445)
.+.. +...|.++.++|..+.|++|+.... +.+ .-......+++-..-.+..+.. ...+++. +.
T Consensus 141 sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~---~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~ 211 (282)
T PF15492_consen 141 SFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG---MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR 211 (282)
T ss_pred EecccCCCceeEEEEcCCCCEEEEeccCCC------CCc---cccccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence 1112 3678999999999888887765432 000 0111122222222211211111 1111100 01
Q ss_pred EEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+++- +.+......... .|..|..||||+.||+...+ |.|.+|++.+-++.
T Consensus 212 ~~~~~~-------------~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s------G~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 212 GLLRIP-------------SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS------GSLSLWEIPSLRLQ 264 (282)
T ss_pred ceeecc-------------ceeeeeccccCCCceEEEEECCCCCEEEEEEcC------CeEEEEecCcchhh
Confidence 111110 101111111122 79999999999999999988 99999999874443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=98.56 Aligned_cols=243 Identities=14% Similarity=0.273 Sum_probs=155.5
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
......+++|+...++++.+|.||.+++..+.+.......... + .......-.++.+|. ..|.-+.|+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gl--------a--a~snLsmNQtLeGH~-~sV~vvTWNe 81 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGL--------A--AASNLSMNQTLEGHN-ASVMVVTWNE 81 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccc--------c--cccccchhhhhccCc-ceEEEEEecc
Confidence 4566889999999889999999999999988743322111110 0 011223446788996 8999999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCcee-e--ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCC
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTP-I--RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGF 297 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~ 297 (445)
+.+.|-++..+ |-|.+|-+-.+.... . ...++.|.+++|+.+|..++....||.|.+=.++.... +.+.+ ..
T Consensus 82 ~~QKLTtSDt~-GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~ 158 (1189)
T KOG2041|consen 82 NNQKLTTSDTS-GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QL 158 (1189)
T ss_pred ccccccccCCC-ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--he
Confidence 98888887777 899999998876532 1 23457799999999999999999999998887776654 22322 23
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC---ccccccccccCCC-ccceEEeC--------CCCCEE
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP---VDLPDIVSLTGSQ-GIEKIAWD--------ASGERL 365 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~v~~~~~s--------p~g~~l 365 (445)
...+.|++|.+.++.+... +..++++.......++.. ++... .+.... .|..+.|. ||...|
T Consensus 159 l~hv~ws~D~~~~Lf~~an----ge~hlydnqgnF~~Kl~~~c~Vn~tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKAN----GETHLYDNQGNFERKLEKDCEVNGTG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred ccceeecccHHHHHhhhcC----CcEEEecccccHHHhhhhceEEeeee--eecCCCccccceeeccCccccCCCCCCEE
Confidence 4578899999887766332 444444433322221110 00000 111111 35555554 588899
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+.+..+ |.+.+-.-.+.... + +...+-.+....|+++|.+
T Consensus 233 avcy~n------Gr~QiMR~eND~~P----v--v~dtgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 233 AVCYAN------GRMQIMRSENDPEP----V--VVDTGMKIVGAKWNHNGAV 272 (1189)
T ss_pred EEEEcC------ceehhhhhcCCCCC----e--EEecccEeecceecCCCcE
Confidence 999887 77777665443221 1 1111234556777777654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.3e-09 Score=87.84 Aligned_cols=254 Identities=13% Similarity=0.156 Sum_probs=153.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE--ecCC------------CCCeeEEEECcCCC--cEEEEe
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDS------------QRDVKVLEWRPNGG--RSLSVG 163 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~~~------------~~~v~~l~~spd~~--~l~~~~ 163 (445)
..|+++.|...|.+||+|...|.|.+|.-+...+-.-+.+ .++| ...|..+.|-.+++ .++.++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 4689999999999999999999999998654332111111 1233 24688899866543 478888
Q ss_pred cCCcEEEEccCCCCCccccc-----cc----ccccccc---cc---CCCCCceEEEE---ee-cccCCCceeEEEECCCC
Q 013338 164 CKGGICIWAPSYPGNAASVR-----SG----AASFLGA---LS---RGPGTRWTLVD---FL-RSQNGEQITALSWGPDG 224 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~-----~~----~~~~~~~---~~---~~~~~~~~~~~---~~-~~~~~~~v~~~~~sp~~ 224 (445)
.|.+|++|.+.... ...+. .+ ..++... +. ....+.+.+.. .. ..| .-.+.++.|+.|.
T Consensus 107 NdktiKlWKiyekn-lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH-~yhiNSiS~NsD~ 184 (460)
T COG5170 107 NDKTIKLWKIYEKN-LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH-PYHINSISFNSDK 184 (460)
T ss_pred CCceeeeeeeeccc-chhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc-eeEeeeeeecCch
Confidence 89999999987332 11110 00 0000000 00 01111122221 12 234 3678999999998
Q ss_pred CeEEEEEecCCeEEEEEccCCCc----eeeecCC-----CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-----c
Q 013338 225 RYLASASYESSSFTIWDVAQGLG----TPIRRGF-----GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----E 289 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~-----~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-----~ 289 (445)
+.++++..- .|.+|++.-... ..+..|. .-|++..|+|. ...+...+..|.|++-|++...+ .
T Consensus 185 et~lSaDdL--rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSADDL--RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeeccce--eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 888887543 799999874322 2233332 45888999996 56677888899999999985332 1
Q ss_pred ----ccc--------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---------
Q 013338 290 ----PWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--------- 348 (445)
Q Consensus 290 ----~~~--------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 348 (445)
.+. .....|..+.|+++|++|++..- ..+.+|+... ...++.++.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-----ltvkiwDvnm---------~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-----LTVKIWDVNM---------AKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-----ceEEEEeccc---------ccCCceeechHHHHHHHH
Confidence 111 22346788999999999996532 3344443321 112222221
Q ss_pred -----CCC--ccceEEeCCCCCEEEEEEcC
Q 013338 349 -----GSQ--GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 349 -----~~~--~v~~~~~sp~g~~l~~~s~d 371 (445)
... .-..+.||.|.+.+.+|+..
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccc
Confidence 111 22457788888888888876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.3e-08 Score=89.08 Aligned_cols=200 Identities=20% Similarity=0.264 Sum_probs=128.7
Q ss_pred CcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec
Q 013338 133 GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR 208 (445)
Q Consensus 133 ~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (445)
+.....+.. ....+..-+|+|++..++..... ..+.+++++.......+. +.
T Consensus 182 g~~~~~l~~-~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~~ 237 (425)
T COG0823 182 GYNQQKLTD-SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------FN 237 (425)
T ss_pred CcceeEecc-cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------cC
Confidence 444444432 45567788999999888777542 348888888444433221 22
Q ss_pred ccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-C--eEEEEeC
Q 013338 209 SQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G--TFYLWET 283 (445)
Q Consensus 209 ~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-g--~v~iwd~ 283 (445)
+.-...+|+|||+.|+.+...+| .|.++|+..+....+....+.-..-.|+|||++++..+.. | .|+++|.
T Consensus 238 ----g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 238 ----GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred ----CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 33456789999999988876556 4666788877766655555555578899999999876643 3 6888888
Q ss_pred CCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC
Q 013338 284 NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 284 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
+......+......-....|+|||++|+......+. ..+.+.+.. +....+.+..........|.|+|+
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~----------~~~~~~~lt~~~~~e~ps~~~ng~ 382 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLA----------SGGKIRILTSTYLNESPSWAPNGR 382 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccC----------CCCcEEEccccccCCCCCcCCCCc
Confidence 888776555444444478899999999987633232 223322211 111133333322566778999999
Q ss_pred EEEEEEcC
Q 013338 364 RLAVSYKG 371 (445)
Q Consensus 364 ~l~~~s~d 371 (445)
.+...+..
T Consensus 383 ~i~~~s~~ 390 (425)
T COG0823 383 MIMFSSGQ 390 (425)
T ss_pred eEEEeccC
Confidence 88876644
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-07 Score=80.57 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=134.1
Q ss_pred CeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
....++.+|.....++.+.. ....+||.........+.... -+.+.+| -.||+|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-----------------gRHFyGH-------g~fs~d 61 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-----------------GRHFYGH-------GVFSPD 61 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-----------------CCEEecC-------EEEcCC
Confidence 34568889976777777764 456789988665554443321 1234455 389999
Q ss_pred CCeEEEEEec----CCeEEEEEccCC-Ccee-eecCCCCeeEEEEcCCCCEEEEEe------------------cCCeEE
Q 013338 224 GRYLASASYE----SSSFTIWDVAQG-LGTP-IRRGFGGLSILKWSPTGDYFFAAK------------------FDGTFY 279 (445)
Q Consensus 224 ~~~l~~~~~d----~g~v~vwd~~~~-~~~~-~~~~~~~v~~~~~sp~g~~l~~~~------------------~dg~v~ 279 (445)
|++|++.-.| .|.|-|||...+ +.+. +..+.-....+.+.|||+.|+++. ++..+.
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 9999987432 278999999833 2222 233445567889999998888763 234677
Q ss_pred EEeCCCCCcc---cc--cCCCCCeeEEEECCCCCeEEEEEcCCce----EEEEEeccCCCCccccccCccccccccccCC
Q 013338 280 LWETNTWTSE---PW--SSTSGFVTGATWDPEGRMILLAFAGSLT----LGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 280 iwd~~~~~~~---~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
+.|..++++. .+ ..|...+..+++.++|..++.. ...+. .-.+-++..... .............+ .
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~-Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l--~ 216 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAM-QYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRL--N 216 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEE-ecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhh--C
Confidence 7888888862 24 3477789999999998876643 21111 111111111100 00111111111111 1
Q ss_pred CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 351 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 351 ~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
..+-+|+++++|.++++.|--+ +.+.+||..+++++..
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrG-----g~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRG-----GRVAVWDAATGRLLGS 254 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCC-----CEEEEEECCCCCEeec
Confidence 2689999999999988777554 8999999999988754
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=95.62 Aligned_cols=302 Identities=14% Similarity=0.179 Sum_probs=186.4
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC--cEEEEecCCcEEEEcc
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAP 173 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~--~l~~~~~dg~i~vw~~ 173 (445)
+.....+.++..+|.|+-+|.++.-|- .+.|++.+ +...+-+..-..-.|-.+.|+|... +.++......-.+|++
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p-~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDP-FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcCe-EEEeccCC-CCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 334567889999999999999987774 45577643 3333333322344577888987533 3344444555668988
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCcee--e
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTP--I 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~--~ 250 (445)
...... .+.-.+.+|. ..|+.+.|+|+. ..+++++.| -.+..||++...... .
T Consensus 99 A~ss~~----------------------aIef~lhghs-raitd~n~~~q~pdVlatcsvd-t~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 99 AKSSSN----------------------AIEFVLHGHS-RAITDINFNPQHPDVLATCSVD-TYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred hcCCcc----------------------ceEEEEecCc-cceeccccCCCCCcceeecccc-ccceeeeccCCCcceeee
Confidence 732211 1122355675 899999999854 467888889 499999999765422 2
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
..-......++|+-....+.+.+..+.|++||.+.+.. ..+++|-..++.+.|+.--...+..++. ++.+.+|+.
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~---d~tvkfw~y 231 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN---DGTVKFWDY 231 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC---CCceeeecc
Confidence 22356677899987655566666677899999998765 4566787888888887543322223333 455666653
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-----eeeeeeeeeeCCC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-----ISLSLIGFIRGPG 403 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~ 403 (445)
.... .+.-.++....+|..-.+-|-|+-...--..|+ +.+.+++.++... -..+++..+.||.
T Consensus 232 ~kSt--------~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~----n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 232 SKST--------TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG----NMVPQLRCENSDLEWNVFDLNTPVHTFVGHD 299 (1081)
T ss_pred cccc--------cccceeccccCcceeccccccCceeEeccccCC----eeeeeccccchhhhhccccCCcceeeecCcc
Confidence 2211 111112222225666667775543333222221 3444443332111 1346688999999
Q ss_pred CCCCceeEeec----CCCCCCCeEEEEec-CeeeEeeeee
Q 013338 404 DNPKPVAFSFH----DKFKQGPLLSVCWS-SGFCCTYPLI 438 (445)
Q Consensus 404 ~~v~~v~~spd----g~~~~~~~l~~~~~-~G~v~~~~~~ 438 (445)
+.|..+.|-.. |.|....+..|.|+ +-.+..|++.
T Consensus 300 D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 300 DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 99999888653 44666677888997 6677888874
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-07 Score=76.25 Aligned_cols=235 Identities=11% Similarity=-0.014 Sum_probs=145.7
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
-.+||.|+..|...+|...+.++.... . ..|...|+-+.=.-| ...++.++.|.++++.+++......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~-c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~--------- 152 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQ-C-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF--------- 152 (344)
T ss_pred ccEEEeccccceeeeecccCcccceee-e-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------
Confidence 357888999999999998654433211 1 224433322211111 1357778888899988887322211
Q ss_pred cccccCCCCCceEEEEeecccCC-CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCCCeeEEEEcC
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNG-EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGGLSILKWSP 264 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~~v~~~~~sp 264 (445)
..|.. -.+.++++++|++++++.+.. ..|..|.+...... ........-.+..|+.
T Consensus 153 ------------------~~h~~~~~~ns~~~snd~~~~~~Vgds-~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 153 ------------------AVHNQNLTQNSLHYSNDPSWGSSVGDS-RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred ------------------eeeccccceeeeEEcCCCceEEEecCC-CcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 11211 237889999999999999987 49999988765332 2223345567889999
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCc------ccccCCCCCeeEEEECCCCC--eEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 265 TGDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 265 ~g~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~v~~~~~sp~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
....+|++..||++.|||++.... .....|++.++.+.|++-|. +|+. ...-+....+++.+.. ..+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~-sEhfs~~hv~D~R~~~---~~q~ 289 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI-SEHFSRVHVVDTRNYV---NHQV 289 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE-ecCcceEEEEEcccCc---eeeE
Confidence 999999999999999999997543 23346889999999998664 3333 3333555566654321 1111
Q ss_pred cCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 337 LPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.... .. ....|. .|..-.|+.++.-+.+.+++ .+.=|++....
T Consensus 290 I~i~-~d--~~~~~~tq~ifgt~f~~~n~s~~v~~e~-------~~ae~ni~srs 334 (344)
T KOG4532|consen 290 IVIP-DD--VERKHNTQHIFGTNFNNENESNDVKNEL-------QGAEYNILSRS 334 (344)
T ss_pred EecC-cc--ccccccccccccccccCCCcccccccch-------hhheeeccccc
Confidence 1000 00 111222 47777888887777766553 45566666543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-07 Score=88.45 Aligned_cols=201 Identities=20% Similarity=0.273 Sum_probs=132.4
Q ss_pred CceeEEEECCCCCeEEEEEecCC---eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-cCC--eEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESS---SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDG--TFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g---~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg--~v~iwd~~~~ 286 (445)
..+...+|+|+++.++......+ .+.++++++++...+....+.-...+|+|||++|+.+. .|| .|+++|+.++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 56777899999999887754322 48999999998877777777777889999999987554 455 5888899988
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL 365 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l 365 (445)
....+....+.-..-.|+|||++|+...+..+.-.++.+.- ++.....+.... .-....|+|||++|
T Consensus 273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~------------~g~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL------------EGSQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC------------CCCceeEeeccCCCCcCccCCCCCCEE
Confidence 87666655555558899999999998877766554444321 333333443333 22377899999999
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC-------CCCCeEEEEecCeeeEe
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF-------KQGPLLSVCWSSGFCCT 434 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~-------~~~~~l~~~~~~G~v~~ 434 (445)
+..+..+.+ -.|.+.|+.++... ....+......-.|+|+|+. ..+..|...-.+|++..
T Consensus 341 ~~~~~~~g~---~~i~~~~~~~~~~~------~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 341 VFESSSGGQ---WDIDKNDLASGGKI------RILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred EEEeccCCc---eeeEEeccCCCCcE------EEccccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 988743211 23667777655421 11112333345567777664 13444544455666664
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.3e-07 Score=90.55 Aligned_cols=203 Identities=12% Similarity=0.141 Sum_probs=133.9
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEE----EccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIW----DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-- 285 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vw----d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-- 285 (445)
...|.++.+-++...++.+..+ |.|.++ +.........-.-..+|.+++||||+..|+..+.++++.+....=
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 3689999999999989888888 899999 655555555555688999999999999999999999888774320
Q ss_pred ---------------------CCc-ccccC------------------------CCCCeeEEEECCCCCeEEEEEc--CC
Q 013338 286 ---------------------WTS-EPWSS------------------------TSGFVTGATWDPEGRMILLAFA--GS 317 (445)
Q Consensus 286 ---------------------~~~-~~~~~------------------------~~~~v~~~~~sp~~~~l~~~~~--~~ 317 (445)
|+. .++.+ ....-..++|-.||.++|++.- ..
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 000 01100 1223456899999999997754 33
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
+..+.+++|+........ .+++.- --..++|.|.|.+||+.-.-.+. ..|.+|.-+.-+.- ...+
T Consensus 234 ~~~R~iRVy~ReG~L~st-----SE~v~g-----Le~~l~WrPsG~lIA~~q~~~~~---~~VvFfErNGLrhg-eF~l- 298 (928)
T PF04762_consen 234 GSRRVIRVYSREGELQST-----SEPVDG-----LEGALSWRPSGNLIASSQRLPDR---HDVVFFERNGLRHG-EFTL- 298 (928)
T ss_pred CceeEEEEECCCceEEec-----cccCCC-----ccCCccCCCCCCEEEEEEEcCCC---cEEEEEecCCcEee-eEec-
Confidence 346888988764221111 111111 13578999999999998764333 66888885532211 1111
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.+......|..++|++|+. +|++-..+ .|++|.
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~-----iLAv~~~~-~vqLWt 331 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSE-----ILAVWLED-RVQLWT 331 (928)
T ss_pred CCCCCCceeeEEEECCCCC-----EEEEEecC-CceEEE
Confidence 1223456789999999977 57876543 366653
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-08 Score=82.30 Aligned_cols=246 Identities=13% Similarity=0.148 Sum_probs=161.9
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++...-|...-+++.+.|.+++||--...++ .+..+.-....+++++.+
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------------------~wpsI~~~mP~~~~~~~y 76 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------------------YWPSIYHYMPSPCSAMEY 76 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccc------------------------cCchhhhhCCCCceEeee
Confidence 47888888888878778899999999999996542211 122222223478999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCC-----CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 295 (445)
.++.+.|+++-.. |++.-+.+... .......|...+..+.|+-...++++.+.|..+.---.+.+...--....
T Consensus 77 ~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 77 VSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE 155 (404)
T ss_pred eccceEEEEEEec-ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee
Confidence 9998888887666 89998877642 12334568899999999988899999999987754444444321100001
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
...+.+.+.-. +.+ -++..+.+-..++. +.....+.++.+|. .+++++|.|..+.|++++.|
T Consensus 156 ~~~t~~~~d~~--~~f-vGd~~gqvt~lr~~-----------~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d--- 218 (404)
T KOG1409|consen 156 TPASALQFDAL--YAF-VGDHSGQITMLKLE-----------QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD--- 218 (404)
T ss_pred ccCCCCceeeE--EEE-ecccccceEEEEEe-----------ecCCceEEEEcCcccceEEEEEcCCCcEEEecccc---
Confidence 11111111111 222 22222333333332 22556678888999 89999999999999999988
Q ss_pred ccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 375 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
..+.+||+..++-. ...+.+|...|..+...+.-+ .|-.+-++|.|.+++.-..
T Consensus 219 ---~~vi~wdigg~~g~----~~el~gh~~kV~~l~~~~~t~-----~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 219 ---HSVIMWDIGGRKGT----AYELQGHNDKVQALSYAQHTR-----QLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ---CceEEEeccCCcce----eeeeccchhhhhhhhhhhhhe-----eeeeccCCCeEEEEeccce
Confidence 89999999865544 236678988888777654322 2333447888888876543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-07 Score=77.60 Aligned_cols=164 Identities=16% Similarity=0.297 Sum_probs=108.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcC------CCcEEEEecCCcEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPN------GGRSLSVGCKGGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd------~~~l~~~~~dg~i~ 169 (445)
-+-++||||+.+||.+...|+|+++|+. |..+..+... -...|..|.|-+- ...|++...+|.++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~---g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLM---GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecc---cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 4678999999999999999999999985 3333333221 2356777777442 12577777788877
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEE--eecccCCCceeEEEECCCCCeEEEEEecCC----------eE
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASASYESS----------SF 237 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----------~v 237 (445)
-|-+..+.... +.... .+..|....|.++.++|..++|++|+.... -+
T Consensus 123 Sy~vs~gt~q~--------------------y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GL 182 (282)
T PF15492_consen 123 SYLVSVGTNQG--------------------YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGL 182 (282)
T ss_pred eEEEEcccCCc--------------------ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCc
Confidence 77654211111 11111 233444578999999999888888764321 24
Q ss_pred EEEEccCCCc---------------------ee-----e----ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 238 TIWDVAQGLG---------------------TP-----I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 238 ~vwd~~~~~~---------------------~~-----~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
..|.+-++.. .+ + ......|..|..||||+.||+...+|.|.+|++.+-+
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 5565433210 00 0 0124678999999999999999999999999998765
Q ss_pred c
Q 013338 288 S 288 (445)
Q Consensus 288 ~ 288 (445)
.
T Consensus 263 ~ 263 (282)
T PF15492_consen 263 L 263 (282)
T ss_pred h
Confidence 5
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=104.85 Aligned_cols=185 Identities=12% Similarity=0.209 Sum_probs=136.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.++.=+|...+.++|+.||.+++|.+.. +..+......-+..|+.+.|+.+|+.+-++..||.+.+|.+. +.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PK 2283 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccC--CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----Cc
Confidence 577888899999999999999999999853 555555544445889999999999999999999999999987 11
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE--ecCCeEEEEEccCCC--ceeeecCCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQGL--GTPIRRGFGG 256 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~g~v~vwd~~~~~--~~~~~~~~~~ 256 (445)
..-..+.|. .....+.|-. ..+++++ .|++.+.+||..-.. ...-..|.+.
T Consensus 2284 ----------------------~~~s~qchn-k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2284 ----------------------PYTSWQCHN-KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred ----------------------ceeccccCC-ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 122234554 6777777754 5666654 355799999975332 2223678999
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++++++.|..+.|++|+.+|.|.+||++..+++..... +. ...+++.+ +..+.+++|++.
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~-ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTG-SSEGNIKIWRLS 2398 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeecc-CcccceEEEEcc
Confidence 99999999999999999999999999998877432211 44 44455544 444666777664
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-08 Score=82.19 Aligned_cols=185 Identities=11% Similarity=0.118 Sum_probs=124.6
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCccee-EEecCCCCCeeEEEECcCCCcEEE-EecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~v~~l~~spd~~~l~~-~~~dg~i~vw~~~~~~~~ 179 (445)
..++.|++.+..++++-.+|.+.+-+... ..... ...+.|.-+++...|+.....++. +|.|+.+..||++.++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce--eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 45788999999999988999988554321 21111 133579999999999876555555 55569999999983331
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccC-CCceeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ-GLGTPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~-~~~~~~~~~~~~v 257 (445)
..+...+.|+ ..|.++.-+| .+.+|++|++|+ .|++||.++ ++......-.+.|
T Consensus 201 ----------------------~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~v~GGV 256 (339)
T KOG0280|consen 201 ----------------------FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAKVGGGV 256 (339)
T ss_pred ----------------------eeeecceeee-cceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCccccce
Confidence 1333355565 7899998887 688999999996 999999984 4444444456899
Q ss_pred eEEEEcCC--CCEEEEEecCCeEEEEeCCCCCcc------cccCCCCCeeEEEECCCCCeEEEEE
Q 013338 258 SILKWSPT--GDYFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 258 ~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
+.+.++|. ++.|+++ +-+-.+|-+...+... ....|.+-+..-.|......++++.
T Consensus 257 WRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred EEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence 99999995 3334444 4444677777655432 2224555555556644445566643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-06 Score=76.43 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=135.1
Q ss_pred EEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCe
Q 013338 149 VLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRY 226 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~ 226 (445)
+++|.+..+.|+.+.. .+.|..|+...... ..+.. .....+++. +++++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------------------~~~~~---~~~~G~~~~~~~g~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--------------------------EVIDL---PGPNGMAFDRPDGRL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------------------EEEES---SSEEEEEEECTTSEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--------------------------EEEec---CCCceEEEEccCCEE
Confidence 5788885567777764 58888888772211 11111 226677777 66554
Q ss_pred EEEEEecCCeEEEEEccCCCceeeec------CCCCeeEEEEcCCCCEEEEEecC--------CeEEEEeCCCCCccccc
Q 013338 227 LASASYESSSFTIWDVAQGLGTPIRR------GFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPWS 292 (445)
Q Consensus 227 l~~~~~d~g~v~vwd~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~~~~~~~~~ 292 (445)
+.+... .+.++|+.+++...+.. .....+++++.|+|++.++.... |.|+.++.. ++...+.
T Consensus 55 -~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~ 130 (246)
T PF08450_consen 55 -YVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA 130 (246)
T ss_dssp -EEEETT--CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred -EEEEcC--ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence 444433 56777998886654433 23568899999999977766543 568888888 5554444
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
..-...+.++|+|+++.|+++......++.+.+........ ....+..+.... ..-.++++.+|++.++....
T Consensus 131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred cCcccccceEECCcchheeecccccceeEEEecccccccee------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 44556789999999999988877777788777643211000 011111222222 36789999999877766555
Q ss_pred CCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ec
Q 013338 372 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FH 414 (445)
Q Consensus 372 ~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pd 414 (445)
+.|.+++.+ |+++. .+.-....+++++|. |+
T Consensus 205 ------~~I~~~~p~-G~~~~-----~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 205 ------GRIVVFDPD-GKLLR-----EIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp ------TEEEEEETT-SCEEE-----EEE-SSSSEEEEEEESTT
T ss_pred ------CEEEEECCC-ccEEE-----EEcCCCCCEEEEEEECCC
Confidence 889999988 66552 344334578899994 44
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.4e-06 Score=72.14 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=132.5
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC-cCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 104 ~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s-pd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
++.|.+ ++.++++--..+.|..|+.. ++.. .... ... ...+++. ++ +.++++... .+.++|....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~--~~~~-~~~~--~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g----- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPD--TGEV-EVID--LPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTG----- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--TTEE-EEEE--SSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTT-----
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECC--CCeE-EEEe--cCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCC-----
Confidence 678998 66666666678888888874 2332 2222 222 7778887 56 667666654 4555576622
Q ss_pred cccccccccccccCCCCCceEEEEee--cccCCCceeEEEECCCCCeEEEEEecC-------CeEEEEEccCCCceeeec
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES-------SSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~-------g~v~vwd~~~~~~~~~~~ 252 (445)
.+..+... ..+.....+.+++.|+|++.++..... |.|..++.. ++......
T Consensus 71 ------------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 71 ------------------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp ------------------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred ------------------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 11222222 121336788999999999665544321 346667766 55555555
Q ss_pred CCCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCC--c---ccc---cCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 253 GFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT--S---EPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~--~---~~~---~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
.-...+.++|+|+++.|+ +-+..+.|+.|++.... . ..+ ....+..-.+++..+|++.++. -....+..+
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~-~~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD-WGGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE-ETTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE-cCCCEEEEE
Confidence 567789999999999776 55667899999986432 2 112 2222347889999999876643 334555555
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEe-CCCCCEEEEEE
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW-DASGERLAVSY 369 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-sp~g~~l~~~s 369 (445)
+- .++.+..+.... .+++++| .++.+.|+..+
T Consensus 211 ~p--------------~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 211 DP--------------DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ET--------------TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CC--------------CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 42 334444444433 6899999 57777776554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.4e-08 Score=84.02 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=108.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---CcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~i~vw~~~~~~ 177 (445)
....+..++.+++||.+..+....++++..............-....+++.|-.+....+.+-.- ..+.+|.... +
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 45567788999999999988888788775432211111111234445566665554555544333 4555665542 1
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~ 255 (445)
+...+-+|- ..++.++|+||+++|+++..| +.|++-....-..+ -..+|+.
T Consensus 143 -------------------------~~~~~lGhv-Sml~dVavS~D~~~IitaDRD-EkIRvs~ypa~f~IesfclGH~e 195 (390)
T KOG3914|consen 143 -------------------------RCEPILGHV-SMLLDVAVSPDDQFIITADRD-EKIRVSRYPATFVIESFCLGHKE 195 (390)
T ss_pred -------------------------Ccchhhhhh-hhhheeeecCCCCEEEEecCC-ceEEEEecCcccchhhhccccHh
Confidence 112244564 789999999999999999999 59998776543332 2457889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
-|..++.-++ ..|++++.|++|++||+.+++..
T Consensus 196 FVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 196 FVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred heeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 9999998754 55899999999999999999863
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-06 Score=78.90 Aligned_cols=276 Identities=17% Similarity=0.256 Sum_probs=142.8
Q ss_pred ccCCCEEEEEE---------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 108 HQHKHIVAFIS---------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 108 sp~g~~la~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
|||+++++... ..+.+.|+|++. ++... +.. ....+....|||+|+.++.+ .++.|.+++...+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~-l~~-~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITP-LTP-PPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEE-SS--EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEE-CcC-CccccccceeecCCCeeEEE-ecCceEEEECCCCCe
Confidence 68888888743 345678888853 33222 221 25678999999997666555 567899998764422
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-----------------------
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------------------- 235 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----------------------- 235 (445)
.+....+. . .+. .....|.....+ -+.-..+-||||+++|+....|..
T Consensus 76 ~~lT~dg~-~---~i~-nG~~dwvyeEEv----~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~ 146 (353)
T PF00930_consen 76 TQLTTDGE-P---GIY-NGVPDWVYEEEV----FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESI 146 (353)
T ss_dssp EESES--T-T---TEE-ESB--HHHHHHT----SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEE
T ss_pred EEeccccc-e---eEE-cCccceeccccc----cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccc
Confidence 11111110 0 000 000011111110 123356778888888877654432
Q ss_pred ------------eEEEEEccCCCceeee------cCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCCCccccc
Q 013338 236 ------------SFTIWDVAQGLGTPIR------RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTSEPWS 292 (445)
Q Consensus 236 ------------~v~vwd~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~~~~~~~ 292 (445)
.+.++|+.+++...+. .....+..+.|.++++.|+..-.++ .+.++|..+++.....
T Consensus 147 ~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 147 RYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp E--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred ccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence 2345566555442221 1234578899999998555443332 5778888887663221
Q ss_pred --CCCCCe---eEEEEC-CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce-EEeCCCCCE
Q 013338 293 --STSGFV---TGATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGER 364 (445)
Q Consensus 293 --~~~~~v---~~~~~s-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~sp~g~~ 364 (445)
.....+ ..+.|. +++..++.....++......+.. .....+.+.... .|.. +.|+++++.
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~------------~~~~~~~lT~G~~~V~~i~~~d~~~~~ 294 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL------------DGGKPRQLTSGDWEVTSILGWDEDNNR 294 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET------------TSSEEEESS-SSS-EEEEEEEECTSSE
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc------------cccceeccccCceeecccceEcCCCCE
Confidence 222222 345554 77776665555655444443321 333344454444 6655 678999887
Q ss_pred EEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCCCCCC-CceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNP-KPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~v-~~v~~spdg~~ 417 (445)
|+..+...+ .....|+.-+++ .++.. .+.. .... ..+.|||+|+|
T Consensus 295 iyf~a~~~~-p~~r~lY~v~~~~~~~~~------~LT~-~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 295 IYFTANGDN-PGERHLYRVSLDSGGEPK------CLTC-EDGDHYSASFSPDGKY 341 (353)
T ss_dssp EEEEESSGG-TTSBEEEEEETTETTEEE------ESST-TSSTTEEEEE-TTSSE
T ss_pred EEEEecCCC-CCceEEEEEEeCCCCCeE------eccC-CCCCceEEEECCCCCE
Confidence 776554322 112455556666 44433 2222 2222 58999999987
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-09 Score=86.82 Aligned_cols=251 Identities=14% Similarity=0.229 Sum_probs=155.2
Q ss_pred EcceeeeeccCcchhhhhhhccccceeecccCCCCCcccCCCCCcchhcccccccCccccccccccccccccccccCCCc
Q 013338 15 INRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHV 94 (445)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 94 (445)
-+-|+|+|.++...+.-.+.|+.+|+|. -|....+.. -...+...+++|..+ +.--.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVv---lfer~~s~~--------------ceykf~teFQshe~E------FDYLk 80 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVV---LFEREKSYG--------------CEYKFFTEFQSHELE------FDYLK 80 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEE---Eeecccccc--------------cchhhhhhhcccccc------hhhhh
Confidence 3568899999998888889999999873 333322221 112344456677543 11112
Q ss_pred CCcCcCCeeEEEEccCC--CEEEEEECCCeEEEEEccCC------------------CCc-----ce-------------
Q 013338 95 HLLPEVDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDS------------------EGK-----DA------------- 136 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g--~~la~~~~d~~i~iw~~~~~------------------~~~-----~~------------- 136 (445)
.+..+..|..+.|-.++ ..++..+.|.+|++|.+... .|. .+
T Consensus 81 SleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia 160 (460)
T COG5170 81 SLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA 160 (460)
T ss_pred hccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE
Confidence 22234568899998765 34555679999999987533 110 00
Q ss_pred ---e-EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC-
Q 013338 137 ---C-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN- 211 (445)
Q Consensus 137 ---~-~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (445)
+ .....|.-.+++++|+.| ...+.++.|=.|.+|+++.....-. .+ .++.|.
T Consensus 161 a~p~rvyaNaH~yhiNSiS~NsD-~et~lSaDdLrINLWnl~i~D~sFn---------------------IV-DiKP~nm 217 (460)
T COG5170 161 AKPCRVYANAHPYHINSISFNSD-KETLLSADDLRINLWNLEIIDGSFN---------------------IV-DIKPHNM 217 (460)
T ss_pred eccceeccccceeEeeeeeecCc-hheeeeccceeeeeccccccCCceE---------------------EE-eccCccH
Confidence 0 111346777889999999 5666667788999999883332211 11 123332
Q ss_pred ---CCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCc----eeee-------------cCCCCeeEEEEcCCCCEEE
Q 013338 212 ---GEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLG----TPIR-------------RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 212 ---~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~----~~~~-------------~~~~~v~~~~~sp~g~~l~ 270 (445)
..-|++..|+|.. ..+...+.. |.|++-|++.... ..+. .-...|..+.|+++|++++
T Consensus 218 eeLteVItSaeFhp~~cn~fmYSsSk-G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl 296 (460)
T COG5170 218 EELTEVITSAEFHPEMCNVFMYSSSK-GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL 296 (460)
T ss_pred HHHHHHHhhcccCHhHcceEEEecCC-CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE
Confidence 1357888999954 445555555 8999999985421 1111 1125688999999999998
Q ss_pred EEecCCeEEEEeCCCCCc--ccccC------------CCCCe---eEEEECCCCCeEEEE
Q 013338 271 AAKFDGTFYLWETNTWTS--EPWSS------------TSGFV---TGATWDPEGRMILLA 313 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~--~~~~~------------~~~~v---~~~~~sp~~~~l~~~ 313 (445)
+-+. -+|+|||.+..+. .++.- ....| ..+.||.|.+.+++|
T Consensus 297 sRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 297 SRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred Eecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence 7653 4899999987553 22211 11222 356788888877765
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.3e-07 Score=74.11 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=118.1
Q ss_pred EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccc
Q 013338 114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
+..++.|.++++.+++....+..... ..-.+.+++.++|++.+.+++....|..|.++....
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~---~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------- 192 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHN---QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------- 192 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeec---cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc---------------
Confidence 44568899999999875333222211 112388999999987777777779999999883322
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc------eeeecCCCCeeEEEEcCCCC
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------TPIRRGFGGLSILKWSPTGD 267 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~------~~~~~~~~~v~~~~~sp~g~ 267 (445)
.+.+.........-.+..|+.....+|++..| |++.|||++.... .....|.+.+..+.|++-|.
T Consensus 193 --------y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd-g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 193 --------YIENIYEAPTSDHGFYNSFSENDLQFAVVFQD-GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred --------eeeeeEecccCCCceeeeeccCcceEEEEecC-CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 22332223333556788999999999999999 7999999986532 12223679999999998654
Q ss_pred --EEEEEecCCeEEEEeCCCCCccccc--------CCC-CCeeEEEECCCCCeEEEEEc
Q 013338 268 --YFFAAKFDGTFYLWETNTWTSEPWS--------STS-GFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 268 --~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~-~~v~~~~~sp~~~~l~~~~~ 315 (445)
+|+..-.-+.+.+.|+++.+..++. .|. ..+..-.|+.++..+.+...
T Consensus 264 lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 264 LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 4555555678999999998752211 222 23666677777766665543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-07 Score=85.02 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=103.9
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe--------------------------
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-------------------------- 273 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-------------------------- 273 (445)
++|||+.+...+...+.+.+.|..+.+......-.+....++++|+|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 456777664444433577777877665543333344556677778877776664
Q ss_pred --------------cCCeEEEEeCCC-----CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 274 --------------FDGTFYLWETNT-----WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 274 --------------~dg~v~iwd~~~-----~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.++.|.+.|.++ .+......-......+.++|||+++++++..+..+.++++.........
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 124577888777 3334444566678899999999999998877788888887654322222
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++ ......+.+..-..+....+|+++|....+..-| ..|..||+..
T Consensus 360 ~~-~~~~~vvaevevGlGPLHTaFDg~G~aytslf~d------sqv~kwn~~~ 405 (635)
T PRK02888 360 KI-KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLD------SQIVKWNIEA 405 (635)
T ss_pred cC-CccceEEEeeccCCCcceEEECCCCCEEEeEeec------ceeEEEehHH
Confidence 21 1111122333332256778999999877777777 8899999875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=82.52 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=105.1
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW 286 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~ 286 (445)
....+..+++++++|++..++ ...+++...... ..........+.+.+..+......+. ....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 445567788899998887774 766776654432 11222234445555555555554443 3445666666667
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCCC-ccceEEeCCCCCE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~g~~ 364 (445)
....+.+|-..+..++|+||+++|+++ +.+..+++.++-. .-.+..+ -||. -|..++.-++ ..
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~Iita-DRDEkIRvs~ypa-------------~f~IesfclGH~eFVS~isl~~~-~~ 207 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITA-DRDEKIRVSRYPA-------------TFVIESFCLGHKEFVSTISLTDN-YL 207 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEe-cCCceEEEEecCc-------------ccchhhhccccHhheeeeeeccC-ce
Confidence 778888999999999999999999866 5555555555421 1122222 3677 7999998765 45
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
|++++.| ++|++||+.+|+.+.
T Consensus 208 LlS~sGD------~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 208 LLSGSGD------KTLRLWDITSGKLLD 229 (390)
T ss_pred eeecCCC------CcEEEEecccCCccc
Confidence 7888776 999999999988764
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=76.77 Aligned_cols=73 Identities=18% Similarity=0.393 Sum_probs=59.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~ 285 (445)
..|.+++-+|..+.++.++.++|.+-+||.+.... ..+..|+..++.+-|+|. +..|+++++||.+.-||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45899999997666666555558999999997744 235678999999999995 77899999999999999876
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-05 Score=78.92 Aligned_cols=289 Identities=12% Similarity=0.202 Sum_probs=154.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.++.|..++.-++.+...|.|.+-|.+. ... ... ..-...|.+++||||...++.....+++.+-+-...-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et--~~~-eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~-- 142 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET--LEL-EIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP-- 142 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc--cce-eee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc--
Confidence 3689999999999999999999999987643 221 111 2356789999999997777777776777654432000
Q ss_pred cccccccccccccccCCCCCceEEEEeecc--cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeecCCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~~~~~ 256 (445)
+.. +.+.. ...+..-.+-|-...+.+ -|+ . |.....+....+ ..........
T Consensus 143 --i~E--------------------~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~-gr~~~~~~~~~ek~~~~~~~~~~ 197 (1265)
T KOG1920|consen 143 --IAE--------------------KPLDADDERKSKFVNVGWGRKETQF-RGS-E-GRQAARQKIEKEKALEQIEQDDH 197 (1265)
T ss_pred --hhc--------------------cccccccccccccceecccccceee-ecc-h-hhhcccccccccccccchhhccC
Confidence 000 00000 001122223332211111 111 0 111111110000 0000112234
Q ss_pred eeEEEEcCCCCEEEEE-----ecCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 257 LSILKWSPTGDYFFAA-----KFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~-----~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
-+++.|--||+++++. ...+.|+|||.+ +.+... ....+.-.+++|-|.|.++++-..... +..+.+...+.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 4579999999999873 223799999988 554322 223334468999999999986544332 33444443321
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
-.. +.-.-.+.... .+..++|+.++..||+....... ..|++|-+.+-... +-+.+.-..... +
T Consensus 276 L~h-------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~NyhWY---LKq~l~~~~~~~--~ 340 (1265)
T KOG1920|consen 276 LRH-------GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNYHWY---LKQELQFSQKAL--L 340 (1265)
T ss_pred ccc-------cccccCCcccccchheeeecCCCCceeeeeccccc---ceEEEEEecCeEEE---EEEEEecccccc--c
Confidence 110 00011111222 48999999999999984444332 56999998874433 222333222221 6
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.|+|--.+ .|-+-..+|.+.+|+|.+.
T Consensus 341 ~W~p~~~~----~L~v~~~sG~~~v~~~~~~ 367 (1265)
T KOG1920|consen 341 MWDPVTEK----TLHVLRESGQRLVRDFAWT 367 (1265)
T ss_pred cccCCCce----eEEEEecCCcEEEEEEEEe
Confidence 77774322 2333235666666666543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-05 Score=66.30 Aligned_cols=227 Identities=20% Similarity=0.179 Sum_probs=138.4
Q ss_pred eeEEEEcc-CCCEEEEEECCCe-EEEEEccCCCCcceeEEecCCCCCee-EEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 102 LQGVSWHQ-HKHIVAFISGSTQ-VIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 102 v~~~~~sp-~g~~la~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~v~-~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
...++.+| .+..+|++-.-|+ ..+||.. +++....+......-.+ --.||+||+.|+++-.| |.|-|||.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~--~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCR--TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcC--CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 34678888 5566777776664 4567764 45555444321111111 25799998888887654 88999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------cCC-----------e
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------S 236 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~g-----------~ 236 (445)
.. .+..+.++..+- -....+.+.|||+.|+++.. |.| .
T Consensus 85 ~~------------------------~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 85 AR------------------------GYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred cC------------------------CcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 71 123444455552 45677889999988887631 111 4
Q ss_pred EEEEEccCCCceee-----ecCCCCeeEEEEcCCCCEEEEEecCC-------eEEEEeCCCC-Cc-----ccccCCCCCe
Q 013338 237 FTIWDVAQGLGTPI-----RRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTW-TS-----EPWSSTSGFV 298 (445)
Q Consensus 237 v~vwd~~~~~~~~~-----~~~~~~v~~~~~sp~g~~l~~~~~dg-------~v~iwd~~~~-~~-----~~~~~~~~~v 298 (445)
+.+.|..+|+.... ..|+..+..+++.++|..++..-..| -|.+++.... +. .......+.+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence 55667777776432 22567899999999998776654443 3455544331 11 1123456789
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~ 370 (445)
-+|++++++.++++++-..+....|+.. +...+.... -..+..++-.+++ ++++.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~-------------tg~~~~~~~-l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAA-------------TGRLLGSVP-LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECC-------------CCCEeeccc-cCceeeeeecCCc-eEEeCCC
Confidence 9999999999999887665555555432 222221111 1146667776766 6666543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-06 Score=79.37 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=147.9
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG- 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~- 224 (445)
.-.++.|+|.| |++-++...|.+-|...- +++..+.-|. ..|+.+.|.|..
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~-------------------------q~iqsie~h~-s~V~~VrWap~~~ 68 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSL-------------------------QLIQSIELHQ-SAVTSVRWAPAPS 68 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhh-------------------------hhhhccccCc-cceeEEEeccCCC
Confidence 35678999983 555555667778777622 2444455564 789999998732
Q ss_pred ----------Ce-EEEEEecCCeEEEEEccCCCceee-ecCCCCeeEEEEcC---CC-CEEEEEecCCeEEEEeCCCCCc
Q 013338 225 ----------RY-LASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSP---TG-DYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 225 ----------~~-l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp---~g-~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.. ||++.-. |.|.+||...+..+.. ..+...+..++|-+ +. ..|++-.....+.+|+..+|+.
T Consensus 69 p~~llS~~~~~lliAsaD~~-GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 69 PRDLLSPSSSQLLIASADIS-GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred chhccCccccceeEEecccc-CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 22 4444444 8999999998766544 44567888999876 34 4567777788999999999987
Q ss_pred c-cccCCCCCeeEEEECCC-CCeEEEEEcCCceEEEEEecc-CCCCccccccCcccc--c-------------cccccCC
Q 013338 289 E-PWSSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLP--D-------------IVSLTGS 350 (445)
Q Consensus 289 ~-~~~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------------~~~~~~~ 350 (445)
. +.........++.+.|- .+.+..-+.. +.+...++-. ..+....+.+..+.. . ...-+..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSK-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccC-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 3 33334445667888873 3444433222 3333333221 111111111111111 0 0000011
Q ss_pred C----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEE
Q 013338 351 Q----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC 426 (445)
Q Consensus 351 ~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~ 426 (445)
. ....++|+|.-+.++..... .-+.|+|++-...+. .+.-..+.+.-+.|-|+++- ..|-+.
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~p------rellv~dle~~~~l~-----vvpier~~akfv~vlP~~~r---d~Lfcl 292 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITFP------RELLVFDLEYECCLA-----VVPIERGGAKFVDVLPDPRR---DALFCL 292 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEec------cceEEEcchhhceeE-----EEEeccCCcceeEeccCCCc---ceEEEE
Confidence 1 12456789976655555444 669999998655543 33335566778899999874 246677
Q ss_pred ecCeeeEeee
Q 013338 427 WSSGFCCTYP 436 (445)
Q Consensus 427 ~~~G~v~~~~ 436 (445)
.+||++.++-
T Consensus 293 H~nG~ltirv 302 (1062)
T KOG1912|consen 293 HSNGRLTIRV 302 (1062)
T ss_pred ecCCeEEEEE
Confidence 8999998653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-07 Score=83.67 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=107.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce----eEE-ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA----CIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~----~~~-~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
.|+.++--.+.+-+++++.|+++++|.+.. ++..+ +.+ ...|..+|.++.|-.+-+. .++.||.|.+||.-.
T Consensus 737 ~iRai~AidNENSFiSASkDKTVKLWSik~-EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFi 813 (1034)
T KOG4190|consen 737 KIRAIAAIDNENSFISASKDKTVKLWSIKP-EGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFI 813 (1034)
T ss_pred HhHHHHhcccccceeeccCCceEEEEEecc-ccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeecccc
Confidence 466666556777888999999999999864 22211 222 2479999999999988333 445799999999763
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEE-EecCCeEEEEEccCCCceeee-
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASA-SYESSSFTIWDVAQGLGTPIR- 251 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~-~~d~g~v~vwd~~~~~~~~~~- 251 (445)
+.....+... ...+.+..+..-+ +...+..+ +.. .+|+++|.+..+.....
T Consensus 814 gr~Laq~~da------------------------pk~~a~~~ikcl~nv~~~iliAgcsae-STVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 814 GRLLAQMEDA------------------------PKEGAGGNIKCLENVDRHILIAGCSAE-STVKLFDARSCEWTCELK 868 (1034)
T ss_pred cchhHhhhcC------------------------cccCCCceeEecccCcchheeeeccch-hhheeeecccccceeeEE
Confidence 3322221111 1113333333333 33344444 556 49999999987653321
Q ss_pred -----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 252 -----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 252 -----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
...+-+.+++..+.|++++++-.+|.|.+.|.++++.
T Consensus 869 Vcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred eccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce
Confidence 1235688999999999999999999999999999986
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=80.23 Aligned_cols=178 Identities=10% Similarity=0.069 Sum_probs=119.0
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-----ccc
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPW 291 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~ 291 (445)
+|+- .|-. ++.+.+ -.|-+-++.++....+. ..+.|.++.|...++.+..|..+|.|..+|++.+.. ...
T Consensus 218 awSlni~gyh-fs~G~s-qqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLS-QQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-eccccc-ceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5653 3334 445556 48999999998766655 778899999998899999999999999999997632 344
Q ss_pred cCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEE
Q 013338 292 SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAV 367 (445)
Q Consensus 292 ~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~ 367 (445)
.-|...|+++..-. ++++|+++ +.++ .+.+|+.+... ..+.+.++.+|. .-.-+...+....+++
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS-~M~g---kikLyD~R~~K-------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMAS-DMTG---KIKLYDLRATK-------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS 363 (425)
T ss_pred EEcCcchhhhhhhccccceEeec-cCcC---ceeEeeehhhh-------cccceeeeecccccccccccccccccceEEE
Confidence 46888899887665 66666644 3444 44444432111 223477888886 2233445677778888
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCC
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 417 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~ 417 (445)
++.| ...++|.++.+.++...+. ........+.+++|. .+|+.
T Consensus 364 ~GdD------cytRiWsl~~ghLl~tipf-~~s~~e~d~~sv~~~sr~~k~ 407 (425)
T KOG2695|consen 364 VGDD------CYTRIWSLDSGHLLCTIPF-PYSASEVDIPSVAFDSRLGKA 407 (425)
T ss_pred ccCe------eEEEEEecccCceeeccCC-CCccccccccceehhcccccc
Confidence 7766 9999999999988743332 112223356777774 34444
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=96.94 Aligned_cols=192 Identities=13% Similarity=0.174 Sum_probs=137.7
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
+-..|.++.=+|....+++++.||.+++|....+.......+. . ...|+.+.|+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------------------------g-~s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------------------------G-NSRVTRSRFNH 2261 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------------------------C-cchhhhhhhcc
Confidence 5566788888898888999999999999998754443322221 1 27899999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCCCcc--cccCCCCC
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTSE--PWSSTSGF 297 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~~~~--~~~~~~~~ 297 (445)
+|+.+..+..| |.+.+|.....-....+.|.....++.|-. ..+++++ .++.+.+||.--.... .-..|.+.
T Consensus 2262 qGnk~~i~d~d-g~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2262 QGNKFGIVDGD-GDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred cCCceeeeccC-CceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 99999998889 799999988544455566777888888864 5566654 3678999997654432 12578999
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
++++++.|..+.+++| ++.+.+.+|+.+... .+..++ . ++ ...++++++..
T Consensus 2339 aT~l~~~P~~qllisg----gr~G~v~l~D~rqrq----------l~h~~~----~----~~-~~~~f~~~ss~------ 2389 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISG----GRKGEVCLFDIRQRQ----------LRHTFQ----A----LD-TREYFVTGSSE------ 2389 (2439)
T ss_pred ceEEEEcCcceEEEec----CCcCcEEEeehHHHH----------HHHHhh----h----hh-hhheeeccCcc------
Confidence 9999999999998877 445666666543211 111111 1 44 56788888887
Q ss_pred eEEEEEEccCCCee
Q 013338 378 GLIAIYDARRTPLI 391 (445)
Q Consensus 378 ~~i~vwd~~~~~~~ 391 (445)
|.++||++..-.++
T Consensus 2390 g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLL 2403 (2439)
T ss_pred cceEEEEccccchh
Confidence 89999999865444
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=74.61 Aligned_cols=255 Identities=19% Similarity=0.311 Sum_probs=136.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCC----------------CCCeeEEEECcCCCcEEEEe
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS----------------QRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~----------------~~~v~~l~~spd~~~l~~~~ 163 (445)
..+....|||+|+.+|... ++.|.+++... +...+....+. -+.-..+-||||+++|+...
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~--~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLAT--GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTT--SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCC--CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 4678999999999999875 67788887643 33322222220 12235788999999998887
Q ss_pred cC-CcEEEEccC---CCCC--cc--cc---ccccccccccc--cCCCCCceEEEEe---ecccCCCceeEEEECCCCCeE
Q 013338 164 CK-GGICIWAPS---YPGN--AA--SV---RSGAASFLGAL--SRGPGTRWTLVDF---LRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 164 ~d-g~i~vw~~~---~~~~--~~--~~---~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l 227 (445)
.| ..|..+.+. .... +. .+ ..|...+...+ ..-..++...+.. +... ...+..+.|.++++.|
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~-~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ-DYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-SEEEEEEEEEETTEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-ccCcccceecCCCcEE
Confidence 65 555544333 1111 00 00 01111000000 0000111101111 1112 3567899999999855
Q ss_pred EEEEecC----CeEEEEEccCCCceeeec--CCCCe---eEEEEc-CCCCEEE-EEecCC--eEEEEeCCCCCcccccCC
Q 013338 228 ASASYES----SSFTIWDVAQGLGTPIRR--GFGGL---SILKWS-PTGDYFF-AAKFDG--TFYLWETNTWTSEPWSST 294 (445)
Q Consensus 228 ~~~~~d~----g~v~vwd~~~~~~~~~~~--~~~~v---~~~~~s-p~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~ 294 (445)
+..-.++ -.+.++|..++....... ..+.| ....|. +++..++ ....+| .|++++..++....+...
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G 278 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG 278 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC
Confidence 5443332 246777887776643332 22222 355554 6666554 444566 677788888877777766
Q ss_pred CCCeeE-EEECCCCCeEEEEEcCCc----eEEEEEeccCCCCccccccCccccccccccCCCccc-eEEeCCCCCEEEEE
Q 013338 295 SGFVTG-ATWDPEGRMILLAFAGSL----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE-KIAWDASGERLAVS 368 (445)
Q Consensus 295 ~~~v~~-~~~sp~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~ 368 (445)
.-.|+. +.|+++++.|+..+..+. .++.+.+. ....+..+....... .+.|||+|++++..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~-------------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD-------------SGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT-------------ETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC-------------CCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 667754 678999888876554422 33333331 134455555555445 99999999998876
Q ss_pred EcC
Q 013338 369 YKG 371 (445)
Q Consensus 369 s~d 371 (445)
..+
T Consensus 346 ~s~ 348 (353)
T PF00930_consen 346 YSG 348 (353)
T ss_dssp EES
T ss_pred EcC
Confidence 543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.6e-05 Score=62.60 Aligned_cols=219 Identities=13% Similarity=0.119 Sum_probs=129.2
Q ss_pred eeEEEECcCCCcEEEEecC-C-cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 147 VKVLEWRPNGGRSLSVGCK-G-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~d-g-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
...++|+|...+-++.... | ...++|.+....+..+.+. .-+.+.+|- .|||||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-----------------~~RHfyGHG-------vfs~dG 125 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-----------------EGRHFYGHG-------VFSPDG 125 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-----------------cCceeeccc-------ccCCCC
Confidence 4458899987776666654 4 4568898866666554433 122345553 799999
Q ss_pred CeEEEEEec----CCeEEEEEccCCCce--eeecCCCCeeEEEEcCCCCEEEEEec------------------CCeEEE
Q 013338 225 RYLASASYE----SSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKF------------------DGTFYL 280 (445)
Q Consensus 225 ~~l~~~~~d----~g~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~------------------dg~v~i 280 (445)
++|+..-.| .|.|-|||.+.+-.. .+..|.-....+.|.+||+.++.+.. .-++.+
T Consensus 126 ~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvl 205 (366)
T COG3490 126 RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVL 205 (366)
T ss_pred cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEE
Confidence 999876432 278999999854321 23345566778999999999987643 124566
Q ss_pred EeCCCCCcc---ccc--CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 281 WETNTWTSE---PWS--STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 281 wd~~~~~~~---~~~--~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
.|..++++. .+. .+...+..++..+||+.++.+--. ...+.---+-........+..++..+....+ ...|-
T Consensus 206 ld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~--anYig 283 (366)
T COG3490 206 LDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF--ANYIG 283 (366)
T ss_pred EeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH--Hhhhh
Confidence 676666652 222 345678889999999887744111 1111100000000011111111111111111 11578
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
+++.+.+..+++..|-.+ +...+||..+|.++....+
T Consensus 284 siA~n~~~glV~lTSP~G-----N~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 284 SIAANRRDGLVALTSPRG-----NRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred heeecccCCeEEEecCCC-----CeEEEEEcCCCcEEecccc
Confidence 889887777777666554 7899999999998854433
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=86.59 Aligned_cols=161 Identities=12% Similarity=0.174 Sum_probs=111.4
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|...|+.++--.+.+.+++++.|.+|++|.++..+.... .-.|.-+++.|+ .+|.++.|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~------------------tsaCQfTY~aHk-k~i~~igf 792 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG------------------TSACQFTYQAHK-KPIHDIGF 792 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc------------------cceeeeEhhhcc-Ccccceee
Confidence 47888898887766667899999999999999984443222 113556678886 89999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCcee-ee--cCCCCeeEEEEcCC--CCEEEE-EecCCeEEEEeCCCCCcc---cc
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTP-IR--RGFGGLSILKWSPT--GDYFFA-AKFDGTFYLWETNTWTSE---PW 291 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~--~~~~~v~~~~~sp~--g~~l~~-~~~dg~v~iwd~~~~~~~---~~ 291 (445)
-.+.++++++ | |.|.+||.--++... +. ..++.+..+..-++ ...++. ++...+|+++|.+..+.. +.
T Consensus 793 L~~lr~i~Sc--D-~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 793 LADLRSIASC--D-GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eeccceeeec--c-CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 9998888876 6 699999987765533 21 12233444444343 444444 477889999999987651 11
Q ss_pred ---cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 292 ---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 292 ---~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
...+..+++++..+.|++++++.+. +.+-.++
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSn-Gci~~LD 904 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSN-GCIAILD 904 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcC-CcEEEEe
Confidence 2445678999999999999976543 3344444
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-06 Score=75.22 Aligned_cols=250 Identities=11% Similarity=0.037 Sum_probs=156.6
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~ 187 (445)
.-.+++.+++.||.++.|.-....+.........|...|.+++.+-++..+.+.+. |..++++|+..-.....+...
T Consensus 18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-- 95 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-- 95 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc--
Confidence 34578999999999999985432444444444578889999999999655555566 799999999833222221111
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCce---eeecCCCCeeEEEE
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKW 262 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~---~~~~~~~~v~~~~~ 262 (445)
.- .+. .+...+|.. ..|+++..++|.+.++|-....+. ...-|..+|..+.+
T Consensus 96 ---------------------~l-Pg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 96 ---------------------DL-PGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred ---------------------cC-CCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 00 011 122223321 256666667789999998765532 23347899999999
Q ss_pred cCCCCEEEEEecCCeEEEEeCCC------CCc-c---------cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNT------WTS-E---------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~------~~~-~---------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++-+..+++....|.|.-|.... .+. . .+........++.|+|++..+..-. .+..++...+.
T Consensus 153 ~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~K 231 (558)
T KOG0882|consen 153 NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFK 231 (558)
T ss_pred eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEec
Confidence 99999999999999999998873 111 0 0113455678999999999988543 44444444432
Q ss_pred cCCCC---------------ccccccCcccc----ccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 327 SKPPS---------------LDAHLLPVDLP----DIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 327 ~~~~~---------------~~~~~~~~~~~----~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
..... ....+..+... .-+.+..|. .-+.+.|...|++|+.++.- -|+|.++
T Consensus 232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-------gikvin~ 304 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-------GIKVINL 304 (558)
T ss_pred cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-------eEEEEEe
Confidence 21100 00000000000 012223344 56778899999999998764 3899999
Q ss_pred cCCCee
Q 013338 386 RRTPLI 391 (445)
Q Consensus 386 ~~~~~~ 391 (445)
.++...
T Consensus 305 ~tn~v~ 310 (558)
T KOG0882|consen 305 DTNTVV 310 (558)
T ss_pred ecCeEE
Confidence 887655
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-06 Score=70.50 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=118.7
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCeeEEEEcCCCCEEEEEe-----cCCeEEEEeCCCCCcc-ccc
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAK-----FDGTFYLWETNTWTSE-PWS 292 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~-----~dg~v~iwd~~~~~~~-~~~ 292 (445)
+--++.++++..| |.+.+++.+.-... ++..-...-.+.+....++.+.++. .-+..+.|+++..+.. ...
T Consensus 98 s~~~t~V~~~~~d-g~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 98 TMTDNRVCIGYAD-GSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cccCCceEecCCC-ceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 3345678888888 79999997752111 1111111122223333455544432 2345677777765442 222
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEc
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYK 370 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~ 370 (445)
.....|.+++-+|..+.++.++.+++.+..|+..+ -..+...++.|. .++.+.|+| ++..|+++++
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn------------~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN------------VAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEccc------------ccchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence 22334999999999999988888877777777543 234566778888 899999999 5688999999
Q ss_pred CCCcccceEEEEEEccCCCeeeeeeeeeeeCC-----CCCCCc-eeEee---cCC-----C-CCCCeEEEEecCeeeEee
Q 013338 371 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-----GDNPKP-VAFSF---HDK-----F-KQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 371 d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~v~~-v~~sp---dg~-----~-~~~~~l~~~~~~G~v~~~ 435 (445)
| |.+..||..+.. +...+.. .++ ++++++ +...+ ... | +.|..|.+|.+-+.|+++
T Consensus 245 d------Gslw~wdas~~~-l~i~~~~--s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~ 315 (319)
T KOG4714|consen 245 D------GSLWHWDASTTF-LSISNQA--SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLT 315 (319)
T ss_pred C------CcEEEEcCCCce-EEecCcc--ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEe
Confidence 8 899999987522 1111110 111 223333 22211 111 1 467889999999999887
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
.-+
T Consensus 316 ~~l 318 (319)
T KOG4714|consen 316 RHL 318 (319)
T ss_pred ccc
Confidence 643
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.8e-07 Score=53.63 Aligned_cols=39 Identities=33% Similarity=0.772 Sum_probs=35.5
Q ss_pred eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
|.++..+++|. ..|++++|+|++++|++++.| +.|++||
T Consensus 1 g~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D-~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS-SSINSIAWSPDGNFLASGSSD-GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS-SSEEEEEEETTSSEEEEEETT-SEEEEEE
T ss_pred CeEEEEEcCCC-CcEEEEEEecccccceeeCCC-CEEEEEC
Confidence 45778899996 899999999999999999999 6999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-06 Score=79.80 Aligned_cols=189 Identities=13% Similarity=0.171 Sum_probs=118.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
..++|++++ ++.++.|..+ |.|++++..... .....|... .-+|.++++|+.||+|.|..+.+.+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~-g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHR-GAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeecccc-ceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677775 5789999888 799999976543 334444333 557999999999999999999988876666
Q ss_pred CCCCCeeEEEECCC-----CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEE
Q 013338 293 STSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV 367 (445)
Q Consensus 293 ~~~~~v~~~~~sp~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 367 (445)
....++.+++++|+ .+.+++|+. -+ +-+..+.+-. ....+.--.+.+.|.++.| .|.++|-
T Consensus 110 df~rpiksial~Pd~~~~~sk~fv~GG~----ag-lvL~er~wlg-------nk~~v~l~~~eG~I~~i~W--~g~lIAW 175 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFSRQQSKQFVSGGM----AG-LVLSERNWLG-------NKDSVVLSEGEGPIHSIKW--RGNLIAW 175 (846)
T ss_pred ecCCcceeEEeccchhhhhhhheeecCc----ce-EEEehhhhhc-------CccceeeecCccceEEEEe--cCcEEEE
Confidence 67788999999998 345555522 23 3333221100 1111111112227999999 5778988
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++.+ -|+|||+.+++.+. .++.....+..=.|-|.-.+.....|.|||.+ .|.++.+.
T Consensus 176 and~-------Gv~vyd~~~~~~l~-----~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 176 ANDD-------GVKVYDTPTRQRLT-----NIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred ecCC-------CcEEEeccccceee-----ccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 8765 38999999877652 23322233333333333333344568899965 34444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.1e-06 Score=80.44 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=79.1
Q ss_pred EEEEccCCCEEEEEE----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCC
Q 013338 104 GVSWHQHKHIVAFIS----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN 178 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~ 178 (445)
-.+|+|...++|+++ ..|.|.||- .+|+...... .+-.+++++|+|. ..+++.+.. |.+.+|.......
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa---dtGEPqr~Vt--~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA---DTGEPQRDVT--YPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe---cCCCCCcccc--cceehhhhccChH-HHHHhhccccceeEEEecCCcee
Confidence 458999999999987 678888885 2455444332 2334678999999 777777766 8999998773221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.+....+..++..+.||++|..++++..- |.|.+|...
T Consensus 94 --------------------------htv~~th~a~i~~l~wS~~G~~l~t~d~~-g~v~lwr~d 131 (1416)
T KOG3617|consen 94 --------------------------HTVVETHPAPIQGLDWSHDGTVLMTLDNP-GSVHLWRYD 131 (1416)
T ss_pred --------------------------eeeccCCCCCceeEEecCCCCeEEEcCCC-ceeEEEEee
Confidence 12222234899999999999999999888 799999765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00027 Score=66.25 Aligned_cols=260 Identities=13% Similarity=0.069 Sum_probs=132.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++..++.++.++.+..+|.+ +|+.+..... ...+.+.-.. .++.+++...++.+..||..++...-......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~--tG~~~W~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--- 175 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE--DGKELWRAKL--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVT--- 175 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC--CCcEeeeecc--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCC---
Confidence 46677778888988888874 4655443321 2222211111 23567777778999999987433211111000
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC-----CC---eeEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-----GG---LSILK 261 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~-----~~---v~~~~ 261 (445)
....+.. ..+.... + ..++.+..+ |.+..+|+++|+........ .. ...+.
T Consensus 176 -------------~~~~~~~-----~~sp~~~-~-~~v~~~~~~-g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~ 234 (377)
T TIGR03300 176 -------------PALTLRG-----SASPVIA-D-GGVLVGFAG-GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVD 234 (377)
T ss_pred -------------CceeecC-----CCCCEEE-C-CEEEEECCC-CEEEEEEccCCCEeeeeccccCCCCCchhhhhccC
Confidence 0000000 0111111 2 356666666 69999999888654322110 00 00111
Q ss_pred EcC--CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 262 WSP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 262 ~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
-+| .+..+++++.+|.++.||..+++......... ...+.. ++..++++ ..++.+..++..+
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~--~~~~vyv~-~~~G~l~~~d~~t------------ 298 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPAV--DDNRLYVT-DADGVVVALDRRS------------ 298 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCceE--eCCEEEEE-CCCCeEEEEECCC------------
Confidence 111 35678888889999999999987632222111 122222 34555544 2345555555422
Q ss_pred cccccccccC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC-CceeEeecCC
Q 013338 340 DLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP-KPVAFSFHDK 416 (445)
Q Consensus 340 ~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v-~~v~~spdg~ 416 (445)
++.+..... ......... .+..|++++.+ |.|+++|.++++++. .+..+...+ .+.++ .++
T Consensus 299 -G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~------G~l~~~d~~tG~~~~-----~~~~~~~~~~~sp~~-~~~- 362 (377)
T TIGR03300 299 -GSELWKNDELKYRQLTAPAV--VGGYLVVGDFE------GYLHWLSREDGSFVA-----RLKTDGSGIASPPVV-VGD- 362 (377)
T ss_pred -CcEEEccccccCCccccCEE--ECCEEEEEeCC------CEEEEEECCCCCEEE-----EEEcCCCccccCCEE-ECC-
Confidence 111111111 111222222 45688888777 899999999988763 333333222 22222 222
Q ss_pred CCCCCeEEEEecCeeeEee
Q 013338 417 FKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~ 435 (445)
-|-++..+|+|..|
T Consensus 363 -----~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 -----GLLVQTRDGDLYAF 376 (377)
T ss_pred -----EEEEEeCCceEEEe
Confidence 25577788988755
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.2e-06 Score=79.02 Aligned_cols=259 Identities=15% Similarity=0.192 Sum_probs=151.1
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc--EEEEecCCcEEEEccCCCCCccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~--l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
.++|+|.-+.++.......+.|+|++.. ..+..... ..+.+..+.|-|+.++ |++.-.||.+.+|-.+.......
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~--~~l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYE--CCLAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhh--ceeEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 4678898877777788888999998752 23333322 4556777888887654 66666789999998763222221
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCce------------
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGT------------ 248 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~------------ 248 (445)
.. +..+...-..+..+++.++.. .+......|. ...++.--.+ |.+.+|.+.+++..
T Consensus 312 ~~------~~~l~~dl~~Q~~~vr~m~~~---rp~~~~~cPs~~sa~avl~s~-g~~~~w~l~~~ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 312 KP------NASLSMDLGEQVHVVRPMEEF---RPVIGASCPSTPSALAVLYSS-GDSTFWQLSNGRIHLDYRSSSIELVL 381 (1062)
T ss_pred cc------chhhccccccceEEEeechhc---ccceeecCCCChhhhhhhhhc-chhHHHhhhcCCcCcccccccccccc
Confidence 11 111222222233344433332 2222233343 2222222223 56667766644110
Q ss_pred -----------------e---eecCCCCeeEEEEcC-----------CCC-------EEEEEecCCeEEEEeCCCCCc-c
Q 013338 249 -----------------P---IRRGFGGLSILKWSP-----------TGD-------YFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 249 -----------------~---~~~~~~~v~~~~~sp-----------~g~-------~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
. --.|..+..+....| .|+ .++.|+..|+|.++|+.++.. .
T Consensus 382 pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~ 461 (1062)
T KOG1912|consen 382 PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA 461 (1062)
T ss_pred cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhh
Confidence 0 001223333333322 222 577899999999999999887 6
Q ss_pred cccCCCCCeeEEEECCCCCeEEEEEcCCc-----eEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCC
Q 013338 290 PWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG 362 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g 362 (445)
.+..|...|.++.|--+.+++-.+++... ....+.+-+.+.. -.+.++.+.+.. +|..+..|..|
T Consensus 462 ~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG--------lsk~fR~l~~~despI~~irvS~~~ 533 (1062)
T KOG1912|consen 462 SFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG--------LSKRFRGLQKPDESPIRAIRVSSSG 533 (1062)
T ss_pred hhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc--------cccccccCCCCCcCcceeeeecccC
Confidence 67789999999999988777766654322 2222333222211 111222222322 79999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
+||+....+ .-+.+||+++..
T Consensus 534 ~yLai~Fr~------~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 534 RYLAILFRR------EPLEIWDLKTLR 554 (1062)
T ss_pred ceEEEEecc------cchHHHhhccch
Confidence 999999988 779999997644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-05 Score=76.25 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=132.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC----C---
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----T--- 285 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~----~--- 285 (445)
..|.++.|..+...++.+... |.|.+-|..+........-...|.+++|+||+..++..+..+++.+..-. .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecC-CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999998888 79999998887766666668999999999999999999888887765431 0
Q ss_pred --------CCc---------ccccC---------------------CCCCeeEEEECCCCCeEEEEEcCCceE-EEEEec
Q 013338 286 --------WTS---------EPWSS---------------------TSGFVTGATWDPEGRMILLAFAGSLTL-GSIHFA 326 (445)
Q Consensus 286 --------~~~---------~~~~~---------------------~~~~v~~~~~sp~~~~l~~~~~~~~~~-~~~~~~ 326 (445)
++. ..+.+ ....-++++|--||+++++..-..... +.+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 000 00110 111224589999999999764333333 777887
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
+.....+. ..++.. . --.+++|-|.|..+++....+++ +.|.+|.-+.-+. ....-.+......|
T Consensus 228 drEg~Lns-----~se~~~-~----l~~~LsWkPsgs~iA~iq~~~sd---~~IvffErNGL~h--g~f~l~~p~de~~v 292 (1265)
T KOG1920|consen 228 DREGALNS-----TSEPVE-G----LQHSLSWKPSGSLIAAIQCKTSD---SDIVFFERNGLRH--GEFVLPFPLDEKEV 292 (1265)
T ss_pred cccchhhc-----ccCccc-c----cccceeecCCCCeEeeeeecCCC---CcEEEEecCCccc--cccccCCcccccch
Confidence 65321111 011100 0 23689999999999998777666 7899998653111 11111122223348
Q ss_pred CceeEeecCCCCCCCeEEE---EecCeeeEeee
Q 013338 407 KPVAFSFHDKFKQGPLLSV---CWSSGFCCTYP 436 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~---~~~~G~v~~~~ 436 (445)
..++|+.++.. |++ +..+..|.+|.
T Consensus 293 e~L~Wns~sdi-----LAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 293 EELAWNSNSDI-----LAVVTSNLENSLVQLWT 320 (1265)
T ss_pred heeeecCCCCc-----eeeeecccccceEEEEE
Confidence 99999988764 555 44455566554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=75.36 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=98.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCC---CCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEcc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---EGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~ 173 (445)
...+|.++.|...+.++..|..+|.|...|+... ++.....+ -|...|+++..-. ++..|++++.+|+|++||+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 3457999999999999999999999999999653 12333333 4899999998765 5678888889999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCC-ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE-QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~ 252 (445)
+..+... -+..+.+|.+. .-.-+...+....++++++|. ..+||.++.+.......
T Consensus 329 R~~K~~~----------------------~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc-ytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATKCKK----------------------SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC-YTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhhccc----------------------ceeeeecccccccccccccccccceEEEccCee-EEEEEecccCceeeccC
Confidence 8332211 14456666421 112234456777888899894 99999999987765444
Q ss_pred CC-----CCeeEEEEc
Q 013338 253 GF-----GGLSILKWS 263 (445)
Q Consensus 253 ~~-----~~v~~~~~s 263 (445)
.. ..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 32 234455553
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00079 Score=60.86 Aligned_cols=294 Identities=13% Similarity=0.023 Sum_probs=131.2
Q ss_pred EEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
.=+|.+||+.|+.++ .+|.-.+|-++..+++..+ ++.+-........++|+++.++..-....++-.|+.+.+.. .+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-~v 117 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-VV 117 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-EE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-EE
Confidence 346789997777655 5776666766655565443 43332233445677888788777766677777777743321 11
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCCCCeEEEEE----------------------ecCCeEE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASAS----------------------YESSSFT 238 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~----------------------~d~g~v~ 238 (445)
.. +. +..+-...| +.|+..++-.- .. ..|.
T Consensus 118 y~----------------------~p---~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~-~~i~ 171 (386)
T PF14583_consen 118 YE----------------------VP---DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPH-CRIF 171 (386)
T ss_dssp EE---------------------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC----EEEE
T ss_pred EE----------------------CC---cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCC-ceEE
Confidence 11 11 122222233 33444433221 12 2566
Q ss_pred EEEccCCCceeeecCCCCeeEEEEcCCCCE-EEEEec------CCeEEEEeCCCCCcccccCCC--CCeeEEEECCCCCe
Q 013338 239 IWDVAQGLGTPIRRGFGGLSILKWSPTGDY-FFAAKF------DGTFYLWETNTWTSEPWSSTS--GFVTGATWDPEGRM 309 (445)
Q Consensus 239 vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~~~------dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~ 309 (445)
.-|+.+|+...+......+..+.|+|.... |+.|-+ |..|.+.+.+.....++..+. ..+..=-|.|||..
T Consensus 172 ~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 172 TIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp EEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred EEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence 778889988888888889999999997554 455543 235666666665555544332 23455579999998
Q ss_pred EEEEEc-CCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCC-c---------ccce
Q 013338 310 ILLAFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD-D---------IYKG 378 (445)
Q Consensus 310 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~-d---------~~d~ 378 (445)
|..-.. .......+.-.+.. +.+. ..+........+--++||++++-=+.|.. + .-+-
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~----------t~~~-~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p 320 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPD----------TGER-RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDP 320 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TT----------T--E-EEEEEE-SEEEEEE-TTSSEEEEEE-------------------
T ss_pred EEEEeecCCCCceEEEeeCCC----------CCCc-eEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCc
Confidence 875321 22222222211111 1111 11111112345556789997764222210 0 0023
Q ss_pred EEEEEEccCCCeeeeeeee----eeeCCCCC-CCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 379 LIAIYDARRTPLISLSLIG----FIRGPGDN-PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~----~~~~~~~~-v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
-|++++++.+....+.... .+.++... =-.+.|||||++ +|-..--.|...+|-+-++
T Consensus 321 ~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 321 WIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEEEEE--
T ss_pred EEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEEEEeCc
Confidence 6778888876544221110 11111111 136799999997 3333333677777665543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.1e-07 Score=83.41 Aligned_cols=202 Identities=15% Similarity=0.216 Sum_probs=129.2
Q ss_pred CeeEEEEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
.+.|++++-+ ...++.|..+|.|.+-.+...-.. -.....++...+++++|++-....+++|.| ..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4778877654 357888999999999877543222 133445788999999999865666666653 67899999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
...-.. . ...|... +.......+++|-.+.+++.+|... ..+.++|++........-.
T Consensus 137 ~s~ltv-P----------------ke~~~fs----~~~l~gqns~cwlrd~klvlaGm~s-r~~~ifdlRqs~~~~~svn 194 (783)
T KOG1008|consen 137 NSLLTV-P----------------KESPLFS----SSTLDGQNSVCWLRDTKLVLAGMTS-RSVHIFDLRQSLDSVSSVN 194 (783)
T ss_pred ccccCC-C----------------ccccccc----cccccCccccccccCcchhhccccc-chhhhhhhhhhhhhhhhhh
Confidence 833110 0 0011111 1112455688898888888888877 4999999985433322223
Q ss_pred CCCeeEEEEcC-CCCEEEEEecCCeEEEEeC-CCCCc--ccccC----CCCCeeEEEECCCCCeEE-EEEcCCceEEEEE
Q 013338 254 FGGLSILKWSP-TGDYFFAAKFDGTFYLWET-NTWTS--EPWSS----TSGFVTGATWDPEGRMIL-LAFAGSLTLGSIH 324 (445)
Q Consensus 254 ~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~-~~~~~--~~~~~----~~~~v~~~~~sp~~~~l~-~~~~~~~~~~~~~ 324 (445)
...+..+..+| .+.++++-. ||.|.+||. +.-+. ..+.. ....+..++|+|...-++ +...+.+.++.+.
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 44566778888 677887766 999999994 43332 12221 223588999999765444 4444555666655
Q ss_pred ec
Q 013338 325 FA 326 (445)
Q Consensus 325 ~~ 326 (445)
+.
T Consensus 274 i~ 275 (783)
T KOG1008|consen 274 IC 275 (783)
T ss_pred cc
Confidence 54
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.6e-05 Score=72.17 Aligned_cols=182 Identities=17% Similarity=0.231 Sum_probs=121.7
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+....+.|++++ +++++.|+.+|.+.+.+.+ +.. ... ..|... ..+|.++++++.||+|.|-.+-+.
T Consensus 37 ~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~---~~~-~~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 37 LQNDAISCCAVH--DKFFALGTHRGAVYLTTCQ---GNP-KTN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred HhhhHHHHHHhh--cceeeeccccceEEEEecC---Ccc-ccc-cccccc------ccCCceEEEecCCCcEEEeeccCC
Confidence 334556777775 5789999999999999874 332 222 234433 667889999999999999887744
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-----CCeEEEEEecCCeEEEEEccC---CCce
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDVAQ---GLGT 248 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~g~v~vwd~~~---~~~~ 248 (445)
...... .- ..++.+++++|+ .+.+++|+.. | +.++.-+- ....
T Consensus 104 ~~~~~~-------------------------df--~rpiksial~Pd~~~~~sk~fv~GG~a-g-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 104 DEITQY-------------------------DF--KRPIKSIALHPDFSRQQSKQFVSGGMA-G-LVLSERNWLGNKDSV 154 (846)
T ss_pred ccceeE-------------------------ec--CCcceeEEeccchhhhhhhheeecCcc-e-EEEehhhhhcCccce
Confidence 332221 11 268899999997 5678888877 6 77776431 1223
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cC------CCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SS------TSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~------~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
......+.|.++.| .|+++|-++.+| |++||+.+++.... .. .....-.+.|.++.+.++ |-+....+.
T Consensus 155 ~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~ 230 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKIC 230 (846)
T ss_pred eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEE
Confidence 34556799999999 588999988776 89999998776322 11 112234678887766554 766554444
Q ss_pred EEE
Q 013338 322 SIH 324 (445)
Q Consensus 322 ~~~ 324 (445)
.++
T Consensus 231 ~I~ 233 (846)
T KOG2066|consen 231 SIK 233 (846)
T ss_pred EEe
Confidence 444
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-07 Score=53.25 Aligned_cols=37 Identities=30% Similarity=0.573 Sum_probs=33.3
Q ss_pred cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 342 PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 342 ~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+++.++.+|. .|++++|+|++++|++++.| +.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 3456788898 99999999999999999998 9999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-05 Score=71.19 Aligned_cols=75 Identities=15% Similarity=0.293 Sum_probs=64.2
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
+..|.+++++|+...++.|+.| |+|.+||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-...
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~D-gSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCED-GSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred CCcceEEecCcccceEEEEecC-CeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 4789999999999999999999 79999998876433 334456688999999999999999999999999976544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.6e-07 Score=85.39 Aligned_cols=174 Identities=14% Similarity=0.223 Sum_probs=120.9
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~ 178 (445)
..+|++|+.+.++|+.|+..|.|+++++.. |...... ..|..+|+-+.-+.||..+++.+.- --..+|++.....
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s--G~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS--GSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccC--ccccccc-cccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 478999999999999999999999999954 6554544 5799999999999999888887654 3567999873222
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ec----C
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RR----G 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~----~ 253 (445)
.. |.-..-.++.|+...+.-+.|...+ ...+||+.++..... .. .
T Consensus 1180 ~~-----------------------------Hsf~ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1180 PR-----------------------------HSFDEDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred cc-----------------------------ccccccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhh
Confidence 11 2223446788877555444444443 789999998865322 21 1
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.-.-++..|+|+.+.++ .||. +||++..+.. .+......+ .-.|+|.|.-++.-
T Consensus 1230 ~y~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIIN 1284 (1516)
T ss_pred hhhccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecc-cccccCCCceEEee
Confidence 22336788999998776 4553 8999987653 333333222 34599999988864
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.2e-06 Score=73.63 Aligned_cols=215 Identities=11% Similarity=0.062 Sum_probs=140.1
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
|...|+-+.-+.. ..++.++.||.++.|--..... ...+..++.|. ..+.+++.+-
T Consensus 8 hrd~i~hv~~tka-~fiiqASlDGh~KFWkKs~isG----------------------vEfVKhFraHL-~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPTKA-KFIIQASLDGHKKFWKKSRISG----------------------VEFVKHFRAHL-GVILSLAVSY 63 (558)
T ss_pred ccceeeeEeeehh-heEEeeecchhhhhcCCCCccc----------------------eeehhhhHHHH-HHHHhhhccc
Confidence 7777777766665 7888899999999998652111 12344466675 7888999999
Q ss_pred CCCeEEEEEe-cCCeEEEEEccCCCceeeecCCCCeeEEEEcC-CCC---EEE-EEecCCeEEEEeCCCCCcc---cccC
Q 013338 223 DGRYLASASY-ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGD---YFF-AAKFDGTFYLWETNTWTSE---PWSS 293 (445)
Q Consensus 223 ~~~~l~~~~~-d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp-~g~---~l~-~~~~dg~v~iwd~~~~~~~---~~~~ 293 (445)
++.++.+.+. |. .++++|+.+-..........-...+.|.- .|. .|+ +.-.++.+.++|-....+. .-.-
T Consensus 64 dg~L~~Sv~d~Dh-s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 64 DGWLFRSVEDPDH-SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred cceeEeeccCccc-ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 9999999777 74 99999998765443322222222233322 221 233 3345789999998876653 2336
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc----cccCccc--cccccccCCCccceEEeCCCCCEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA----HLLPVDL--PDIVSLTGSQGIEKIAWDASGERLAV 367 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~ 367 (445)
|..+|..+.+++.+..+++. ..-+.+..|........ ..+.... ......+......++.|+|+|..+.+
T Consensus 143 H~sPV~~i~y~qa~Ds~vSi----D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSI----DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred ccCceEEEEeeccccceeec----cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 88899999999999887754 22355666665431111 0111100 11122223336899999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
-+.| ..|++++.++|+++.
T Consensus 219 l~~D------rkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 219 LNPD------RKVRGFVFKTGKLVQ 237 (558)
T ss_pred cCcc------cEEEEEEeccchhhh
Confidence 8776 999999999987653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00051 Score=65.37 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=102.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.--+++..+++++.|+..|.+.+|+-.. +........+..+.+..+..|++...+++++..|.|.++.+.......
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~--~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHT--GEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCc--hhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 355556777899999999999999998642 333332222344556677788884444455556899999887532221
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-----CceeeecCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFG 255 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~~~~~ 255 (445)
.. .+......++..|++++|++++..+++|... |+|..-.+... ..+.+....+
T Consensus 113 ~~--------------------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~-Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 113 LD--------------------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ-GKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred ce--------------------eeccccccCCceEEEEEecccccEEeecCCC-ceEEEEEechhhhhccccceeeccCc
Confidence 11 1111222124899999999999999999877 89998888762 1234445567
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.|..+... ++..|++.. -. -.+++++.++.
T Consensus 172 ~IVQlD~~-q~~LLVStl-~r-~~Lc~tE~eti 201 (726)
T KOG3621|consen 172 EIVQLDYL-QSYLLVSTL-TR-CILCQTEAETI 201 (726)
T ss_pred ceEEeecc-cceehHhhh-hh-hheeecchhHH
Confidence 77777664 344444332 22 34566665544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0029 Score=59.09 Aligned_cols=266 Identities=18% Similarity=0.149 Sum_probs=158.4
Q ss_pred eeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~ 179 (445)
...+...+++..+.... ....+...+.. ... .......-......++.++.+.++++...+ +.|.+.|.......
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~-~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~ 109 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNT-VTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL 109 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccc--cce-eeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccccee
Confidence 45677888885544433 22234433321 111 111111111334678889998877766654 89999996533222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEccCCCceeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
..+..+ .....++++|+++.++++... ++++.+.|..++.......-....
T Consensus 110 ~~~~vG---------------------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P 162 (381)
T COG3391 110 GSIPVG---------------------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP 162 (381)
T ss_pred eEeeec---------------------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc
Confidence 221111 256789999999988888762 358889998887765543322233
Q ss_pred eEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccc-----ccCCCCCeeEEEECCCCCeEEEEEcCC--ceEEEEEeccCC
Q 013338 258 SILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKP 329 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~~~--~~~~~~~~~~~~ 329 (445)
..++++|+|+.+.++. .++.|.+.|..+..... ..........+.++|+|.++.+....+ ..+..++...
T Consensus 163 ~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-- 240 (381)
T COG3391 163 TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-- 240 (381)
T ss_pred ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--
Confidence 8999999999776655 68899999987765543 122333456789999999888776554 2444444321
Q ss_pred CCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCC
Q 013338 330 PSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 407 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 407 (445)
...... +.... ....+..+|+|+.+.+..... +.+.+-|..+..+...... .......+.
T Consensus 241 -----------~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-----~~V~vid~~~~~v~~~~~~--~~~~~~~~~ 302 (381)
T COG3391 241 -----------GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-----GTVSVIDGATDRVVKTGPT--GNEALGEPV 302 (381)
T ss_pred -----------ceEEEeccccccCCCCceeECCCCCEEEEEecCC-----CeEEEEeCCCCceeeeecc--cccccccce
Confidence 111111 11111 346789999999998875543 7899999888766532111 111122355
Q ss_pred ceeEeecCCC
Q 013338 408 PVAFSFHDKF 417 (445)
Q Consensus 408 ~v~~spdg~~ 417 (445)
.+++.+....
T Consensus 303 ~~~~~~~~~~ 312 (381)
T COG3391 303 SIAISPLYDT 312 (381)
T ss_pred eccceeeccc
Confidence 6666665443
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-06 Score=84.62 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=126.5
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
+.|....++++|+-+.++|+.+...|.|++|++.++.... ...+|. ..|+.+.=
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-------------------------s~ncH~-SavT~veP 1151 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-------------------------SVNCHQ-SAVTLVEP 1151 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-------------------------cccccc-cccccccc
Confidence 4678889999999998888888899999999998443322 245564 89999988
Q ss_pred CCCCCeEEEEEecCC-eEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc----C
Q 013338 221 GPDGRYLASASYESS-SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS----S 293 (445)
Q Consensus 221 sp~~~~l~~~~~d~g-~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~----~ 293 (445)
+.||..+++.+.-+. -..+|++..- ..... -..-.++.|+....+-+.|+......+||+.++.. .++. .
T Consensus 1152 s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs---f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASSTGGPRHS---FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred cCCcceeeeeccccCchHHHhccccccCcccc---ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh
Confidence 889988777665432 4689998652 11211 23455788886655556666667789999999875 3322 2
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
....-+.+.|+|+..+|+ .++..|.++. ...+..+..-..-..=.|+|+|.-++.-+
T Consensus 1229 ~~y~~n~a~FsP~D~LIl----ndGvLWDvR~---------------~~aIh~FD~ft~~~~G~FHP~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSPCDTLIL----NDGVLWDVRI---------------PEAIHRFDQFTDYGGGGFHPSGNEVIINS---- 1285 (1516)
T ss_pred hhhhccccccCCCcceEe----eCceeeeecc---------------HHHHhhhhhheecccccccCCCceEEeec----
Confidence 222336788999999887 2344444442 12233332222112235899998887632
Q ss_pred cccceEEEEEEccCCCee
Q 013338 374 DIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~ 391 (445)
.|||+++-+++
T Consensus 1286 -------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1286 -------EIWDMRTFKLL 1296 (1516)
T ss_pred -------hhhhhHHHHHH
Confidence 49999875544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0006 Score=66.34 Aligned_cols=185 Identities=11% Similarity=0.062 Sum_probs=117.9
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCC-eeEEEECcCCCcEEEEecC-C----cEEEEccCCCCC
Q 013338 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRD-VKVLEWRPNGGRSLSVGCK-G----GICIWAPSYPGN 178 (445)
Q Consensus 105 ~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-v~~l~~spd~~~l~~~~~d-g----~i~vw~~~~~~~ 178 (445)
-+|++.+..+|.|+.+|.|.+.+-. -+....+ ..+... |..+....+...|++.+.| + .++||+++....
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS---FQLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc---ceeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3678889999999999998877632 2222222 234444 5544444443567777776 3 589999983321
Q ss_pred ccccccccccccccccCCCCCceEEE---Eeec---ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC----CCc-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLV---DFLR---SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLG- 247 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----~~~- 247 (445)
... . .++ +.+. +....++.+++.+.+-+.+++|-.+ |.|..+.-+- +..
T Consensus 105 n~s---P----------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~n-G~V~~~~GDi~RDrgsr~ 164 (933)
T KOG2114|consen 105 NNS---P----------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTN-GLVICYKGDILRDRGSRQ 164 (933)
T ss_pred CCC---c----------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecC-cEEEEEcCcchhccccce
Confidence 110 0 111 1111 1124678899999998888888777 8999885331 111
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
........+|+.+++..+++.++.+..-..|.+|.+..... ..+..++..++|..+++....++++
T Consensus 165 ~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 165 DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 22334578999999998888744333456789999886552 4466888899999999876645545
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0047 Score=58.08 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=81.7
Q ss_pred ceEEEEeecccCCCceeEEEECC-CCCeEEEEEec---CCe----EEEEEccCCCcee----eecCCCCeeEEEEcCCCC
Q 013338 200 RWTLVDFLRSQNGEQITALSWGP-DGRYLASASYE---SSS----FTIWDVAQGLGTP----IRRGFGGLSILKWSPTGD 267 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d---~g~----v~vwd~~~~~~~~----~~~~~~~v~~~~~sp~g~ 267 (445)
+..++..++.. ....++.||- +...+.+.... +|. -.+|+...++... .......|.+++++|+..
T Consensus 195 klEvL~yirTE--~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~ 272 (545)
T PF11768_consen 195 KLEVLSYIRTE--NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED 272 (545)
T ss_pred cEEEEEEEEec--CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc
Confidence 44444445444 3456778876 44555554321 132 3577777665432 234678999999999999
Q ss_pred EEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 268 YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.|+.|+.||.|.+||...+.... ....-.++.++|+|+|..++++.+ .+.+..+++
T Consensus 273 kLvlGC~DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai~~V~s~-qGelQ~FD~ 328 (545)
T PF11768_consen 273 KLVLGCEDGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAIFVVGSE-QGELQCFDM 328 (545)
T ss_pred eEEEEecCCeEEEEEcCCCeeee-eeecccceEEEEcCCCcEEEEEcC-CceEEEEEe
Confidence 99999999999999998765432 234456788999999999998744 244444443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0007 Score=58.31 Aligned_cols=191 Identities=14% Similarity=0.195 Sum_probs=100.9
Q ss_pred CeeEEEEccCCCE-EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~-la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
.+..++|+|+... +++....+.|...+. +|+.+..+...-.+..-.|++..++ .++.+. .++.+.++++.....
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~---~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL---DGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET---T--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE----T
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC---CCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecccc
Confidence 5899999998654 445556666655553 4777666654445668899998774 555544 468899988853322
Q ss_pred ccccccccccccccccCCCCCceEEEE-eecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC---CCceee----
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPI---- 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~---~~~~~~---- 250 (445)
....... .... .+....+..+-.++|+|.++.|+.+-..+ -..+|.+.. ......
T Consensus 99 ~~~~~~~----------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 99 SLDRADV----------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp T--EEEE----------------EEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-H
T ss_pred ccchhhc----------------eEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeecccc
Confidence 1111100 0000 01111236789999999888888887663 667777654 211111
Q ss_pred --e---cCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc---cccC-------CCCCeeEEEECCCCCeEEEE
Q 013338 251 --R---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE---PWSS-------TSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 251 --~---~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~---~~~~-------~~~~v~~~~~sp~~~~l~~~ 313 (445)
. .....+.+++++|. +++++....+..|..+|. +++.. .+.. .-.....|+|.++|++.+++
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1 12346788999997 556667777888999994 44432 2221 12357889999999877654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00011 Score=70.23 Aligned_cols=175 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred EEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCCCCc
Q 013338 105 VSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNA 179 (445)
Q Consensus 105 ~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~~~~ 179 (445)
+=++|||+.+...+ ..+.+.+.|.++ .+....+. -.+....++++|+|+.+++++.+ .++..-+.......
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~et--meV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAET--MEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECcc--ceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 34567776654322 455667777642 33333332 23355778999998888887632 22322222211100
Q ss_pred c---------cccccccccc-----ccccCCC--CCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 180 A---------SVRSGAASFL-----GALSRGP--GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 180 ~---------~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
. .+..+....+ ..+.... ...+.....+.- ......++++|||+++++++.-+.+|.|.|+.
T Consensus 274 vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 274 VVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 0 0000100000 0000000 001223333332 25778999999999999988766799999998
Q ss_pred CCCc------------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 013338 244 QGLG------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 244 ~~~~------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~ 285 (445)
+.+. .....-.......+|.++|+...+.-.|..|..||+.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7542 11112234566789999999888888899999999876
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00024 Score=69.55 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred CCCeeEEEECcCCCcEEEEec------CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 144 QRDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
...+.+.+++|||+.+++... |..-.||-....+....+..+ ...+.
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g---------------------------~~~t~ 401 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG---------------------------HSLTR 401 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---------------------------CCCCC
Confidence 346789999999988887762 444455544322222222111 24778
Q ss_pred EEECCCCCeEEEEEecC-----------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEE---EeC
Q 013338 218 LSWGPDGRYLASASYES-----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL---WET 283 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~-----------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i---wd~ 283 (445)
..|+|||+.|++....+ +.+.+.++..+.... ...+.|..+.|||||+.++... +++|++ -..
T Consensus 402 PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 402 PSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeC
Confidence 89999998887775321 234334554443332 3356799999999999998766 577877 444
Q ss_pred CCCCcc-----ccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 284 NTWTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 284 ~~~~~~-----~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
..++.. .+. .....+.++.|..++.+++...+.+..++.+.+
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL 526 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence 445421 122 233346889999999966544333333444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00013 Score=68.53 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=92.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE-ccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw-~~~~~~~~ 179 (445)
..+.++++|+|++++. +.+|...|+... .. +.. ..+.-...+|.+. +.+++....+.|.|+ +.. ....
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~--~~---r~k---~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~~~~ 102 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTAL--AW---RNK---AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-NEVV 102 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETT--TT---EEE---EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E-TT
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEcc--CC---ccc---ccCceeEEEEecC-ccEEEEECCCeEEEEEcCc-cccc
Confidence 4679999999999998 568888888731 11 111 1234567899985 667777678889996 443 1110
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
.. ++. +..+..+-. |.+|+..+ + +.|.+||..+++......... |..
T Consensus 103 k~-------------------------i~~--~~~~~~If~---G~LL~~~~-~-~~i~~yDw~~~~~i~~i~v~~-vk~ 149 (443)
T PF04053_consen 103 KS-------------------------IKL--PFSVEKIFG---GNLLGVKS-S-DFICFYDWETGKLIRRIDVSA-VKY 149 (443)
T ss_dssp --------------------------------SS-EEEEE----SSSEEEEE-T-TEEEEE-TTT--EEEEESS-E--EE
T ss_pred eE-------------------------EcC--CcccceEEc---CcEEEEEC-C-CCEEEEEhhHcceeeEEecCC-CcE
Confidence 11 111 112333332 77777765 4 389999999998776665543 899
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCC------------CcccccCCCCCeeEEEECCCCCeEEEE
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTW------------TSEPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
+.|+++|.+++..+.+ .++|++.... ....+......|.+.+|..+ .++.+
T Consensus 150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT 212 (443)
T ss_dssp EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE
Confidence 9999999999988855 6777776543 12222233567889999876 44444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00046 Score=61.22 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=91.8
Q ss_pred cCCCCCeeEEEECcCCCc-EEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+...|.+++|||...- +..++.+..|+|.|+.+.. ++..+..+ ..+++++
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------------------~vssy~a~--~~~wSC~ 242 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------------------VVSSYIAY--NQIWSCC 242 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce-------------------------eeeheecc--CCceeee
Confidence 467889999999998553 5556668999999998332 23334444 6899999
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCce--eeec--CCCCeeEEEE------cCCCCEEEEEecCCeEEEEeCCCCCc-
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGT--PIRR--GFGGLSILKW------SPTGDYFFAAKFDGTFYLWETNTWTS- 288 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~--~~~~v~~~~~------sp~g~~l~~~~~dg~v~iwd~~~~~~- 288 (445)
|.-|....++++..+|.|.+||++..+.. .+.. ...+|..++. .+.|.+|+....+ +..|++.....
T Consensus 243 wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~ 320 (463)
T KOG1645|consen 243 WDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC 320 (463)
T ss_pred eccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence 99988888888777799999999865431 1111 1233433332 2335555554443 44565543221
Q ss_pred ---ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 289 ---EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 289 ---~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
.......+.+.++.+.+-.+.++++..
T Consensus 321 ~p~vlele~pG~cismqy~~~snh~l~tyR 350 (463)
T KOG1645|consen 321 LPCVLELEPPGICISMQYHGVSNHLLLTYR 350 (463)
T ss_pred CCcccccCCCcceeeeeecCccceEEEEec
Confidence 112234556677777777677776543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00026 Score=62.69 Aligned_cols=76 Identities=11% Similarity=0.184 Sum_probs=58.3
Q ss_pred cCCeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~ 176 (445)
+..|+.++|||..+ ++..++.+..|+|.|+++.. ..... ..+ ..+++++|.-|..+++++|. +|.|.|||++..
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccce--eeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 34699999999887 77789999999999996432 22222 223 78999999988788777775 599999999854
Q ss_pred CC
Q 013338 177 GN 178 (445)
Q Consensus 177 ~~ 178 (445)
..
T Consensus 269 ~~ 270 (463)
T KOG1645|consen 269 EG 270 (463)
T ss_pred Cc
Confidence 43
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=58.80 Aligned_cols=240 Identities=11% Similarity=0.128 Sum_probs=123.0
Q ss_pred eEEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecCCC----CCeeEEEECcCCCcEEEEecC--C
Q 013338 103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCK--G 166 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~l~~spd~~~l~~~~~d--g 166 (445)
-.+..||||+.+++++ ....|.+||..+.+......+...+. ...+.++++.|++.+++.-.. .
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3577899999988754 34568999986533222222321111 123345677776665554432 5
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEcc-C
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVA-Q 244 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~-~ 244 (445)
.|.|-|+..++....+... + +. ..+ | ..+.+.+.+.| |.+.-..+. .
T Consensus 119 SVtVVDl~~~kvv~ei~~P---------------------------G-C~-~iy-P~~~~~F~~lC~D-Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDTP---------------------------G-CW-LIY-PSGNRGFSMLCGD-GSLLTVTLDAD 167 (342)
T ss_dssp EEEEEETTTTEEEEEEEGT---------------------------S-EE-EEE-EEETTEEEEEETT-SCEEEEEETST
T ss_pred eEEEEECCCCceeeeecCC---------------------------C-EE-EEE-ecCCCceEEEecC-CceEEEEECCC
Confidence 6777777633322222211 1 11 111 2 12346666677 688877776 3
Q ss_pred CCcee----eec-CCC-CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---ccC----------CCCCeeEEEECC
Q 013338 245 GLGTP----IRR-GFG-GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSS----------TSGFVTGATWDP 305 (445)
Q Consensus 245 ~~~~~----~~~-~~~-~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~~----------~~~~v~~~~~sp 305 (445)
|+... ++. ... -...-++...+..++..+.+|.|+-.|+....... +.. ..+.-.-+++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 43321 111 112 23345555566667768889999999988766421 110 011223456665
Q ss_pred CCCeEEEEEcCC---------ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCcc
Q 013338 306 EGRMILLAFAGS---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDI 375 (445)
Q Consensus 306 ~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~ 375 (445)
....|++-.... ..++.+++. +.+.+.++.....+.+++.+.+.+ +|++.+...
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~-------------t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--- 311 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLK-------------THKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--- 311 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETT-------------TTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT---
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECC-------------CCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC---
Confidence 554444332110 112222221 344455555444688999999886 554444321
Q ss_pred cceEEEEEEccCCCee
Q 013338 376 YKGLIAIYDARRTPLI 391 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~ 391 (445)
+.|.+||..+|+++
T Consensus 312 --~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 312 --GTLDVYDAATGKLV 325 (342)
T ss_dssp --TEEEEEETTT--EE
T ss_pred --CeEEEEeCcCCcEE
Confidence 78999999998876
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0055 Score=57.48 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
+..+++++.++.+.-+|.. +|+.+...... ......+.. +++.+++++.++.+..+|..+++..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~--tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~----------- 128 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAE--TGKRLWRVDLD-ERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKEL----------- 128 (377)
T ss_pred CCEEEEECCCCeEEEEEcc--CCcEeeeecCC-CCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEe-----------
Confidence 5677778888888888874 46554433211 111112222 3467888888899999998733221
Q ss_pred ccccCCCCCceEEEEeecccCCCceeE-EEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee------EEEEc
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS------ILKWS 263 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~------~~~~s 263 (445)
|. . .. ...+.+ ... .+..++.++.+ |.+..||.++++............ +...
T Consensus 129 ----------W~---~-~~--~~~~~~~p~v--~~~~v~v~~~~-g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~- 188 (377)
T TIGR03300 129 ----------WR---A-KL--SSEVLSPPLV--ANGLVVVRTND-GRLTALDAATGERLWTYSRVTPALTLRGSASPVI- 188 (377)
T ss_pred ----------ee---e-cc--CceeecCCEE--ECCEEEEECCC-CeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-
Confidence 11 0 00 011111 111 23456666667 799999999987754443322211 1122
Q ss_pred CCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 264 PTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 264 p~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+..++.+..++.+..+|.++++.
T Consensus 189 -~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 189 -ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred -ECCEEEEECCCCEEEEEEccCCCE
Confidence 134677888889999999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0023 Score=59.78 Aligned_cols=191 Identities=15% Similarity=0.137 Sum_probs=127.6
Q ss_pred eeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCC
Q 013338 102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPG 177 (445)
Q Consensus 102 v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~ 177 (445)
-..++.++.+..+. +...++.|.+.|... .+.......+. ....++++|+++.++++.. ++.+.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc--cceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 45778888887544 444568899998543 33334443333 6788999999888887766 4677777765332
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-----eec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-----~~~ 252 (445)
....+. .+. .+ ..++++|+|+.++.+..+++.|.+.|.+...... ...
T Consensus 152 ~~~~~~------------------------vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~ 204 (381)
T COG3391 152 VTATIP------------------------VGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG 204 (381)
T ss_pred EEEEEe------------------------cCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc
Confidence 222211 111 23 8899999999888887555799999977665543 122
Q ss_pred CCCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCCcccc--c-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPW--S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~~~~--~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
-......+.++|+|+++.+.... +.+...|..++..... . ... ....+.++|+|+.+.+..........++
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 23556789999999977655444 5899999999887443 2 222 5667899999999998755544444444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0012 Score=57.32 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=113.9
Q ss_pred CCeEEEEEccCCCCcceeEEecCC-CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
+|+|..||.. +|+.+.....+. .....+. ..+++++++++..++.+..||..++...
T Consensus 2 ~g~l~~~d~~--tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~------------------- 59 (238)
T PF13360_consen 2 DGTLSALDPR--TGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVL------------------- 59 (238)
T ss_dssp TSEEEEEETT--TTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEE-------------------
T ss_pred CCEEEEEECC--CCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEE-------------------
Confidence 5777778873 466555543211 1111111 2334578888888899999998733211
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCC----CCeeEEEEcCCCCEEEEEe
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGF----GGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~----~~v~~~~~sp~g~~l~~~~ 273 (445)
+. .... ..+.... ..++..++++..+ +.++.+|..+|+..... ... ..........++..++++.
T Consensus 60 -----W~-~~~~--~~~~~~~-~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (238)
T PF13360_consen 60 -----WR-FDLP--GPISGAP-VVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT 129 (238)
T ss_dssp -----EE-EECS--SCGGSGE-EEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE
T ss_pred -----EE-eecc--cccccee-eecccccccccce-eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe
Confidence 11 1111 1111111 1234556666677 69999999999876542 211 1122223333488888888
Q ss_pred cCCeEEEEeCCCCCcc---cccCCC--CC------e-eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 274 FDGTFYLWETNTWTSE---PWSSTS--GF------V-TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 274 ~dg~v~iwd~~~~~~~---~~~~~~--~~------v-~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
.++.|..+|+++++.. ...... .. + ..+.+. ++ .++++.. ++....+++. ++
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~-~g~~~~~d~~-------------tg 193 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSG-DGRVVAVDLA-------------TG 193 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECC-TSSEEEEETT-------------TT
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcC-CCeEEEEECC-------------CC
Confidence 8999999999999872 221111 11 1 223333 44 4444432 2322222332 11
Q ss_pred cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 342 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+.... ...+..+ ...++..|++++.+ +.|..||+++|+..
T Consensus 194 ~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~------~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 194 EKLWSKP-ISGIYSL-PSVDGGTLYVTSSD------GRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEEC-SS-ECEC-EECCCTEEEEEETT------TEEEEEETTTTEEE
T ss_pred CEEEEec-CCCccCC-ceeeCCEEEEEeCC------CEEEEEECCCCCEE
Confidence 2111111 1122221 34677788887766 89999999998765
|
... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.013 Score=55.78 Aligned_cols=249 Identities=13% Similarity=0.099 Sum_probs=127.5
Q ss_pred eeEEEEccCCCEEEEEE-CCC----eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC---------c
Q 013338 102 LQGVSWHQHKHIVAFIS-GST----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---------G 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~-~d~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg---------~ 167 (445)
+..+++||||+++|.+- ..| .++++|++ +++.+..... ......+.|.+|+..++....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~--tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE--TGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT--TTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECC--CCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 44688999999999753 333 58888885 4544332211 11123499999988888887542 2
Q ss_pred --EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCc-eeEEEECCCCCeEEEEEecCC---eEEEEE
Q 013338 168 --ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ-ITALSWGPDGRYLASASYESS---SFTIWD 241 (445)
Q Consensus 168 --i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~g---~v~vwd 241 (445)
|+.|.+.+...... -.+....... ...+..++|+++|+..+.... .+.+.+
T Consensus 202 ~~v~~~~~gt~~~~d~-----------------------lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDE-----------------------LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp EEEEEEETTS-GGG-E-----------------------EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred cEEEEEECCCChHhCe-----------------------eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 55666552221100 1122222122 567889999999887654422 477778
Q ss_pred ccCC-----CceeeecCCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCCCc---c-cccCCCCCeeEEEECCCCCe
Q 013338 242 VAQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTS---E-PWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 242 ~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~~~---~-~~~~~~~~v~~~~~sp~~~~ 309 (445)
+..+ ....+......+....-+..+.+++.... ++.|...++..... . .+..+...+.-..+...+.+
T Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 338 (414)
T PF02897_consen 259 LDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY 338 (414)
T ss_dssp CCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE
T ss_pred ccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCE
Confidence 8765 33445544444443333334444444432 35777788887763 2 34444443333333445566
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCccccccccccC--CCccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEcc
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~~ 386 (445)
|+.....++ ...+.+++.. .......+.. ...|..+...+++..+.... .-.. ..+++.||+.
T Consensus 339 Lvl~~~~~~-~~~l~v~~~~----------~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~---P~~~y~~d~~ 404 (414)
T PF02897_consen 339 LVLSYRENG-SSRLRVYDLD----------DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTT---PPTVYRYDLA 404 (414)
T ss_dssp EEEEEEETT-EEEEEEEETT-----------TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTE---EEEEEEEETT
T ss_pred EEEEEEECC-ccEEEEEECC----------CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCC---CCEEEEEECC
Confidence 665544333 2333333321 0122222221 22355666566665444322 1111 2789999999
Q ss_pred CCCee
Q 013338 387 RTPLI 391 (445)
Q Consensus 387 ~~~~~ 391 (445)
+++..
T Consensus 405 t~~~~ 409 (414)
T PF02897_consen 405 TGELT 409 (414)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 88765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00021 Score=69.81 Aligned_cols=180 Identities=12% Similarity=0.191 Sum_probs=116.5
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
+..++.|+-...+..+|+.. .+..+.... ....|.-+.- +++.++++...|+|.+-|.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~--~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~---------------- 205 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT--EKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPN---------------- 205 (1118)
T ss_pred Ccceeecchhhheeeeeccc--ceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCC----------------
Confidence 44555566555566667642 333332211 2223554443 33556666667999999987
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--------CeEEEEEccCCCceeeecCCCCeeEEEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLGTPIRRGFGGLSILKW 262 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------g~v~vwd~~~~~~~~~~~~~~~v~~~~~ 262 (445)
....++++..|. +.|..+.. .|+.|++++... ..|+|||++..+...-........-+.|
T Consensus 206 ---------s~~~iht~~aHs-~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf 273 (1118)
T KOG1275|consen 206 ---------SFETIHTFDAHS-GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF 273 (1118)
T ss_pred ---------cCceeeeeeccc-cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh
Confidence 334677788886 77776554 688999987532 3689999998766544443444466788
Q ss_pred cCC-CCEEEEEecCCeEEEEeCCC---CCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 263 SPT-GDYFFAAKFDGTFYLWETNT---WTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 263 sp~-g~~l~~~~~dg~v~iwd~~~---~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
+|. ...+++++..|...+-|..+ ... .........+..+++++++..++.+ ...+.+++|.
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg----d~~g~v~~wa 340 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG----DHEGHVNLWA 340 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe----cccCcEeeec
Confidence 887 56788889999999999443 322 2223445559999999999999987 3345566664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0015 Score=63.78 Aligned_cols=191 Identities=13% Similarity=0.132 Sum_probs=121.6
Q ss_pred EECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE
Q 013338 151 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 230 (445)
Q Consensus 151 ~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 230 (445)
+|++.++.++.+..+|.|.+.+-. ....+.++.+..+-|..+....+..+|++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--------------------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--------------------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--------------------------ceeeehheecchhhhhHhhcccCceEEEEE
Confidence 467887888888889998888754 123344555543324444443444678888
Q ss_pred EecCC----eEEEEEccCC---C---ce---eeecC-----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC----CC-
Q 013338 231 SYESS----SFTIWDVAQG---L---GT---PIRRG-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----WT- 287 (445)
Q Consensus 231 ~~d~g----~v~vwd~~~~---~---~~---~~~~~-----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~----~~- 287 (445)
+.|.+ .+++|+++.- . +. ++..+ ..++.+++.+.+-+.+|+|-.+|.|..+.-+- +.
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr 163 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR 163 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc
Confidence 88765 6899998743 1 12 22222 35678899999999999999999999884321 11
Q ss_pred cccccCCCCCeeEEEECCCCCe-EEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL 365 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l 365 (445)
..-......+|+.+.+..+++. ++++.. ..+..+.+.. ..+....+..|+ .+.+-.+++....+
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~g------------r~p~~~~ld~~G~~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSG------------RTPSLKVLDNNGISLNCSSFSDGTYQF 229 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecC------------CCcceeeeccCCccceeeecCCCCccE
Confidence 1222355678999999999887 333322 3344444422 112344566677 78888888765534
Q ss_pred EEEEcCCCcccceEEEEEEccCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++++. ..+.+|+....
T Consensus 230 Ica~~-------e~l~fY~sd~~ 245 (933)
T KOG2114|consen 230 ICAGS-------EFLYFYDSDGR 245 (933)
T ss_pred EEecC-------ceEEEEcCCCc
Confidence 44433 46999998753
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=69.16 Aligned_cols=150 Identities=14% Similarity=0.147 Sum_probs=94.4
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEec---------CCeEEEEeC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF---------DGTFYLWET 283 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~---------dg~v~iwd~ 283 (445)
.|.-+.. +++.+.+|... |+|.+-|.++.+.+. +..|.+.|.++.. .|+.|++++. |.-|+|||+
T Consensus 179 ~v~imR~--Nnr~lf~G~t~-G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTR-GTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ceEEEEe--cCcEEEeeccc-ceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 3444443 67888888877 899999999887754 5678888876655 7899998875 456899999
Q ss_pred CCCCcc-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc--cCCC-ccceEEeC
Q 013338 284 NTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWD 359 (445)
Q Consensus 284 ~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~s 359 (445)
+..+.. .+.-+. ...-+.|.|.=...++..+..+....++.... .......+ ...+ .+..+++|
T Consensus 254 Rmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l-----------sNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 254 RMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL-----------SNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhccCCccccc-CchhhhhcccccceEEEEecccceeecccccc-----------CCCccceeEEccCCCcceeEEec
Confidence 987653 232222 22446677753322222222233333321000 11111111 1122 58999999
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
++|+.||.+-.+ |.|.+|.-.
T Consensus 322 sn~~alafgd~~------g~v~~wa~~ 342 (1118)
T KOG1275|consen 322 SNGDALAFGDHE------GHVNLWADR 342 (1118)
T ss_pred CCCceEEEeccc------CcEeeecCC
Confidence 999999999777 899999843
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.2e-05 Score=75.06 Aligned_cols=200 Identities=19% Similarity=0.257 Sum_probs=123.8
Q ss_pred CCCeeEEEECcCCC-cEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 144 QRDVKVLEWRPNGG-RSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 144 ~~~v~~l~~spd~~-~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...+.|+++.-+.+ -++++| .+|.|.+-.+..+.... .....++ ....++++|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------------~E~tp~~-ar~Ct~lAwn 111 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------------AEVTPGY-ARPCTSLAWN 111 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------------ceecccc-cccccccccc
Confidence 34566777755433 455554 56999887776322210 1112334 3688999999
Q ss_pred C-CCCeEEEEEe----cCCeEEEEEccCCCc-----eeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 222 P-DGRYLASASY----ESSSFTIWDVAQGLG-----TPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 222 p-~~~~l~~~~~----d~g~v~vwd~~~~~~-----~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
+ |.++||.|-. | -.+.|||+.++-. ..+.. ......+++|..+.+.+.+|...+.++++|++......
T Consensus 112 eLDtn~LAagldkhrnd-s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~ 190 (783)
T KOG1008|consen 112 ELDTNHLAAGLDKHRND-SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV 190 (783)
T ss_pred cccHHHHHhhhhhhccc-CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh
Confidence 8 6667777632 3 3789999987621 11222 23456689999888888999988899999998654433
Q ss_pred ccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-----ccceEEeCCCC-C
Q 013338 291 WSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASG-E 363 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~g-~ 363 (445)
..-....+..+...| .+.+++... ++.+.+|+.....+ .++..+.... .+..++|.|.. .
T Consensus 191 ~svnTk~vqG~tVdp~~~nY~cs~~-----dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPFSPNYFCSNS-----DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhcccceecCCCCCceeccc-----cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 333344667788888 677776542 34555555321111 1111111111 38899999964 3
Q ss_pred EEEEEEcCCCcccceEEEEEEcc
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.+++.+.|+ ++|+++|+.
T Consensus 258 lla~l~RdS-----~tIrlydi~ 275 (783)
T KOG1008|consen 258 LLAVLSRDS-----ITIRLYDIC 275 (783)
T ss_pred hhhhhccCc-----ceEEEeccc
Confidence 566777775 899999985
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00031 Score=68.09 Aligned_cols=75 Identities=15% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..+.+++|+|..-.||.|-.-|.+.+|... .+...+....|..+|..+.||++|+.++++..-|.+.+|..+..+
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~---~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTN---TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecC---CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 346789999999999999999999999864 333455556799999999999999888887777999999887443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00044 Score=65.81 Aligned_cols=136 Identities=11% Similarity=0.100 Sum_probs=94.4
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
+...|.--+++..+.++..+++-|.+.+|+-..+..... . ..+. .+.+.....|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~-----------------------~~~~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-K-----------------------NEGA-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-c-----------------------ccCc-cceEEEEEecc
Confidence 445565566667767787788889999998763322111 1 1111 25667778888
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCcee---e----ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-----ccc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTP---I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-----SEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~---~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-----~~~ 290 (445)
+..++|.|+.. |.|.++.++.+.... + ..|+..|++++|++++..+.+|...|+|.+-.+.+.. .+.
T Consensus 87 ~e~lvAagt~~-g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTAS-GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCC-ceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccce
Confidence 88777777776 899999988753311 1 1257789999999999999999999999988887721 134
Q ss_pred ccCCCCCeeEEEEC
Q 013338 291 WSSTSGFVTGATWD 304 (445)
Q Consensus 291 ~~~~~~~v~~~~~s 304 (445)
+....+.|-.+...
T Consensus 166 il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL 179 (726)
T ss_pred eeccCcceEEeecc
Confidence 44556677777665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.02 Score=51.02 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=124.4
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
..++.|+.|+.+| +.+++... ........ +...|..+...|+-+.+++ -.|+.+.++++..-..........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~--~~~~~~i~--~~~~I~ql~vl~~~~~llv-Lsd~~l~~~~L~~l~~~~~~~~~~-- 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD--PSKPTRIL--KLSSITQLSVLPELNLLLV-LSDGQLYVYDLDSLEPVSTSAPLA-- 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC--CccceeEe--ecceEEEEEEecccCEEEE-EcCCccEEEEchhhcccccccccc--
Confidence 3578899999888 88888722 22222222 3344999999998444444 456999999987332222100000
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEE--ECCCCCeEEEEEecCCeEEEEEccCC-----CceeeecCCCCeeEEE
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALS--WGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGGLSILK 261 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~~~~~~v~~~~ 261 (445)
..... .....+. ....+...+ -...+...++....+ .|.+|..... ...........+.+++
T Consensus 77 ------~~~~~--~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~ 145 (275)
T PF00780_consen 77 ------FPKSR--SLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIA 145 (275)
T ss_pred ------ccccc--ccccccc--ccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEE
Confidence 00000 0000011 113344444 122333344444453 8999888763 1223334568899999
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCcccccCC-------------CCCeeEEEECCCCCeEEEEEcCCceEEEE-Eecc
Q 013338 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-------------SGFVTGATWDPEGRMILLAFAGSLTLGSI-HFAS 327 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~-~~~~ 327 (445)
|. ++.|+.|..+ ...+.|+.++....+... ..++..+... ++.+|++ .+. .+.+ +.
T Consensus 146 ~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~~~---~g~fv~~-- 215 (275)
T PF00780_consen 146 FL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-YDN---IGVFVNK-- 215 (275)
T ss_pred Ee--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-ecc---eEEEEcC--
Confidence 98 6677777744 488999997776443311 1223333333 4566553 221 2221 11
Q ss_pred CCCCccccccCccccccc--cccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 328 KPPSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
.+...+ .+.-...+.++++ ...||+.... +.|.||++.++++++
T Consensus 216 ------------~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-------~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 216 ------------NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-------NSIEVRSLETGELVQ 261 (275)
T ss_pred ------------CCCcCcccEEEcCCchhEEEE--ECCEEEEECC-------CEEEEEECcCCcEEE
Confidence 111111 2222224566666 3457776654 569999999987763
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.035 Score=52.57 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=94.1
Q ss_pred CCeeEEEEccCCCEE-EEEE--CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC----CCcEEEEecCCcEEEEc
Q 013338 100 VDLQGVSWHQHKHIV-AFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWA 172 (445)
Q Consensus 100 ~~v~~~~~sp~g~~l-a~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd----~~~l~~~~~dg~i~vw~ 172 (445)
++|..++|. ||+.+ ++.- .+|.+++ ++.+. .+.-..|..++|.|- ...|+++-....|.||.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf-----Gds~v-----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF-----GDSKV-----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCcccc-----CCccE-----eeccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 478899997 45444 4331 2333322 11111 133345899999885 34789999999999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEE--eecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--e
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--T 248 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~ 248 (445)
+....... ++|.+-. .++..-.---..+.|+|....|++-...+ .-.++++..... .
T Consensus 89 L~~s~~e~------------------~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVk 149 (671)
T PF15390_consen 89 LCPSTTER------------------NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVK 149 (671)
T ss_pred eccCcccc------------------ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEE
Confidence 87222111 1222211 12221112234678999988887776664 446666654333 2
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecC-CeEEEEeCCCC
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFD-GTFYLWETNTW 286 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~d-g~v~iwd~~~~ 286 (445)
.-....+.|.|.+|.+||+.|+++-.. =.-++||-...
T Consensus 150 aDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 150 ADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 223567889999999999998766543 35688886543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.012 Score=52.78 Aligned_cols=215 Identities=18% Similarity=0.230 Sum_probs=122.4
Q ss_pred EEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 149 VLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
+..|.++.+.|+.+.- .+.|.-|+....... .+... +.+.++..-..+..|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~--------------------------~~~~p--~~~~~~~~~d~~g~L 80 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR--------------------------VFPSP--GGFSSGALIDAGGRL 80 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE--------------------------EEECC--CCcccceeecCCCeE
Confidence 3457777666666554 477878877622111 11111 334444443344445
Q ss_pred EEEEecCCeEEEEEccCCCc-eeeecC-----CCCeeEEEEcCCCCEEEEEec-----------CCeEEEEeCCCCCccc
Q 013338 228 ASASYESSSFTIWDVAQGLG-TPIRRG-----FGGLSILKWSPTGDYFFAAKF-----------DGTFYLWETNTWTSEP 290 (445)
Q Consensus 228 ~~~~~d~g~v~vwd~~~~~~-~~~~~~-----~~~v~~~~~sp~g~~l~~~~~-----------dg~v~iwd~~~~~~~~ 290 (445)
+++. . .+.+++..++.. ..+... ....+.+...|+|.+.++... -|.|+.+|......+.
T Consensus 81 v~~~-~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 81 IACE-H--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred EEEc-c--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 5442 3 467788765555 222221 256778999999987765433 1356666654333344
Q ss_pred ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc-cccccCCC-ccceEEeCCCCCEEEEE
Q 013338 291 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVS 368 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~sp~g~~l~~~ 368 (445)
+..+-..-+.++||||++.++.+-.....++.+.+.... ....... ...+.... ..-.++...+|.+-+++
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~-------g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT-------GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc-------CccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 445455668999999999999885555556555543210 0001111 11111222 56678888888877544
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
..++ +.|.+|+.+ ++++. .+.-+...+++++|-
T Consensus 231 ~~~g-----~~v~~~~pd-G~l~~-----~i~lP~~~~t~~~Fg 263 (307)
T COG3386 231 VWGG-----GRVVRFNPD-GKLLG-----EIKLPVKRPTNPAFG 263 (307)
T ss_pred ccCC-----ceEEEECCC-CcEEE-----EEECCCCCCccceEe
Confidence 4331 489999988 66652 444455677888885
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0014 Score=64.35 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=91.8
Q ss_pred CCeeEEEEcCCCCEEEEEe------cC--CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 255 GGLSILKWSPTGDYFFAAK------FD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~------~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..+.+.+++|+|+.++... .| ..|++++... ....+.. ....+...|+|+|+.|++..+... ...+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~---~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE-GHSLTRPSWSLDADAVWVVVDGNT---VVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec-CCCCCCceECCCCCceEEEecCcc---eEEEe
Confidence 4678899999999987654 23 3677777533 3333332 234888999999998887654322 12222
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEE---EEccCCCeeeeeeeeeeeCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARRTPLISLSLIGFIRGPG 403 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~v---wd~~~~~~~~~~~~~~~~~~~ 403 (445)
...........++....... .....|..+.|||||+++|... + +.|++ -....|......+.....+-.
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-G------GKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred ccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-C------CEEEEEEEEeCCCCceeecccEEeecccC
Confidence 11111111111223333322 1122699999999999999876 3 67777 444455422122221222334
Q ss_pred CCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 404 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 404 ~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
..+.++.|..++.+ .++.+++...+|.
T Consensus 497 ~~~~~l~W~~~~~L------~V~~~~~~~~v~~ 523 (591)
T PRK13616 497 DTAVSLDWRTGDSL------VVGRSDPEHPVWY 523 (591)
T ss_pred CccccceEecCCEE------EEEecCCCCceEE
Confidence 44688999988763 3555555444443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.022 Score=53.75 Aligned_cols=261 Identities=13% Similarity=-0.005 Sum_probs=126.3
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeE-EEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
+..++.++.++.+.-+|.+ +|+.+..... ...+.+ .... + +.+++...++.+..+|..+++..-...... +
T Consensus 120 ~~~v~v~~~~g~l~ald~~--tG~~~W~~~~--~~~~~ssP~v~-~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE--DGEVAWQTKV--AGEALSRPVVS-D-GLVLVHTSNGMLQALNESDGAVKWTVNLDV--P 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECC--CCCCcccccC--CCceecCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecCCC--C
Confidence 4556667788888888874 4655444321 122221 1111 3 567777778888888887433211110000 0
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC--------CeeEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG--------GLSILK 261 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~--------~v~~~~ 261 (445)
...+.+. .+... .+..++.++.+ |.+..+|..+++......... ....+.
T Consensus 192 --------------~~~~~~~-----~sP~v--~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~ 249 (394)
T PRK11138 192 --------------SLTLRGE-----SAPAT--AFGGAIVGGDN-GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVD 249 (394)
T ss_pred --------------cccccCC-----CCCEE--ECCEEEEEcCC-CEEEEEEccCChhhheeccccCCCccchhcccccC
Confidence 0000000 01111 12345566666 689889988886543221100 011111
Q ss_pred EcC--CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 262 WSP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 262 ~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
-+| .+..+++++.+|.++.+|..+++......... ...+.. .+..++++. .++.+..++..+.. .+|..
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~-----~~W~~ 320 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFAV--DGGRIYLVD-QNDRVYALDTRGGV-----ELWSQ 320 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcEE--ECCEEEEEc-CCCeEEEEECCCCc-----EEEcc
Confidence 222 35567777789999999999987632221111 112222 334444332 33445555542211 01100
Q ss_pred cccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCC-ceeEeecCCCC
Q 013338 340 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK-PVAFSFHDKFK 418 (445)
Q Consensus 340 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~-~v~~spdg~~~ 418 (445)
. .+ .+....+... .+.+|+.++.+ |.|++.|..+|+.+.. ..-....+. ...+
T Consensus 321 ~-----~~-~~~~~~sp~v--~~g~l~v~~~~------G~l~~ld~~tG~~~~~-----~~~~~~~~~s~P~~------- 374 (394)
T PRK11138 321 S-----DL-LHRLLTAPVL--YNGYLVVGDSE------GYLHWINREDGRFVAQ-----QKVDSSGFLSEPVV------- 374 (394)
T ss_pred c-----cc-CCCcccCCEE--ECCEEEEEeCC------CEEEEEECCCCCEEEE-----EEcCCCcceeCCEE-------
Confidence 0 00 0111122222 24567777766 8999999999987632 111112221 1122
Q ss_pred CCCeEEEEecCeeeEeee
Q 013338 419 QGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 419 ~~~~l~~~~~~G~v~~~~ 436 (445)
.+..|-++..+|.+..+.
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 122467788899887654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.01 Score=51.28 Aligned_cols=194 Identities=19% Similarity=0.231 Sum_probs=102.2
Q ss_pred CCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
+-...+..|+|+|+.+.|+++... +.|..++.+ +. +++.+.-...+..-.+++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~------------------------vlr~i~l~g~~D~EgI~y 72 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GK------------------------VLRRIPLDGFGDYEGITY 72 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----------------------------EEEEEE-SS-SSEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CC------------------------EEEEEeCCCCCCceeEEE
Confidence 344569999999998888888765 666555543 22 122222111256788888
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCC--c-----eeee-----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--C
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGL--G-----TPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--W 286 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~--~-----~~~~-----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~--~ 286 (445)
.-++.++++.-.+ +.+.++++.... . ..+. .+...+-.++|+|.++.|+++-+..-..+|.++. .
T Consensus 73 ~g~~~~vl~~Er~-~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 73 LGNGRYVLSEERD-QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp -STTEEEEEETTT-TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred ECCCEEEEEEcCC-CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 8777666654345 699999884321 1 1111 1335689999999988888887776666666654 1
Q ss_pred --Ccc-----c---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc--cC-----
Q 013338 287 --TSE-----P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL--TG----- 349 (445)
Q Consensus 287 --~~~-----~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 349 (445)
... . .......+.+++++|....+++-++.+..+-.++. .++.+..+ ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--------------~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--------------QGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T--------------T--EEEEEE-STTGGG-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC--------------CCCEEEEEEeCCcccCc
Confidence 110 1 11233457889999987766655555555554442 11111111 11
Q ss_pred -CC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 350 -SQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 350 -~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+. -.-.|+|.++|++.+ .++. +..++|
T Consensus 218 ~~~~~QpEGIa~d~~G~LYI-vsEp------Nlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYI-VSEP------NLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEE-EETT------TEEEEE
T ss_pred ccccCCccEEEECCCCCEEE-EcCC------ceEEEe
Confidence 11 367899999996555 4555 566655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0088 Score=56.49 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
..-.+..+.++|+| ++++++.+|...|+.... |+-. . .+.-..++|.+
T Consensus 31 ~~~~p~~ls~npng-r~v~V~g~geY~iyt~~~-------------------------~r~k--~----~G~g~~~vw~~ 78 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG-RFVLVCGDGEYEIYTALA-------------------------WRNK--A----FGSGLSFVWSS 78 (443)
T ss_dssp -SS--SEEEE-TTS-SEEEEEETTEEEEEETTT-------------------------TEEE--E----EEE-SEEEE-T
T ss_pred CCcCCeeEEECCCC-CEEEEEcCCEEEEEEccC-------------------------Cccc--c----cCceeEEEEec
Confidence 34457899999995 555557788888887330 0000 0 13456788988
Q ss_pred CCCeEEEEEecCCeEEEEE-ccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEE
Q 013338 223 DGRYLASASYESSSFTIWD-VAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA 301 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 301 (445)
.++ +|+-... ++|.++. +.......+. ....+..+-. |..|+..+. +.|.+||..+++........ .|..+
T Consensus 79 ~n~-yAv~~~~-~~I~I~kn~~~~~~k~i~-~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V 150 (443)
T PF04053_consen 79 RNR-YAVLESS-STIKIYKNFKNEVVKSIK-LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYV 150 (443)
T ss_dssp SSE-EEEE-TT-S-EEEEETTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEE
T ss_pred Ccc-EEEEECC-CeEEEEEcCccccceEEc-CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEE
Confidence 655 5555545 5899963 3322211221 1223333332 887777764 48999999998874433333 38999
Q ss_pred EECCCCCeEEEEEcCCceEEEEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.|++++++++..+.....+...+
T Consensus 151 ~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 151 IWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp EE-TTSSEEEEE-S-SEEEEEE-
T ss_pred EEECCCCEEEEEeCCeEEEEEec
Confidence 99999999998876554443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.015 Score=58.23 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=62.9
Q ss_pred eEEEEEecCCeEEEEEccCCCc--ee----eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCe
Q 013338 226 YLASASYESSSFTIWDVAQGLG--TP----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFV 298 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~--~~----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v 298 (445)
..+.|-.+ ..+..||.+-... .. .........|++-+.+| +||+|+.+|.||+||--....+ .+.+.+.+|
T Consensus 544 ~tflGls~-n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSD-NSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECC-CceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 34555556 4899999985431 11 11224556777777666 6899999999999995443333 455778999
Q ss_pred eEEEECCCCCeEEEEEc
Q 013338 299 TGATWDPEGRMILLAFA 315 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~ 315 (445)
..|..+.||+||++++.
T Consensus 622 ~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 622 IGIDVTADGKWILATCK 638 (794)
T ss_pred eEEEecCCCcEEEEeec
Confidence 99999999999998765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.018 Score=54.36 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=49.0
Q ss_pred EEEEccCCCEEEEEECC----------C-eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEc
Q 013338 104 GVSWHQHKHIVAFISGS----------T-QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d----------~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~ 172 (445)
.++.+|.|-.+|....+ . .|.||+. .|+.+..+...+ +.+.++.|+.+ ..|++...||.+++||
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~---sG~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS---SGKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYD 107 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC---CCCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEe
Confidence 34666766666665433 1 4888875 477766665544 78999999987 7899999999999999
Q ss_pred cC
Q 013338 173 PS 174 (445)
Q Consensus 173 ~~ 174 (445)
+.
T Consensus 108 ~~ 109 (410)
T PF04841_consen 108 LF 109 (410)
T ss_pred CC
Confidence 86
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.02 Score=51.03 Aligned_cols=210 Identities=13% Similarity=0.097 Sum_probs=117.1
Q ss_pred ccCCCcCCcCcCCeeEEEEccCCCEEEEEE--CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC
Q 013338 89 LHPDHVHLLPEVDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166 (445)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~sp~g~~la~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg 166 (445)
..|..++.+.....+.+++|.||++++... -...|.|.|+.. ++....+. -.+ +..+-=+++ +.+.+.+.||
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~--~kvv~ei~--~PG-C~~iyP~~~-~~F~~lC~DG 157 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA--KKVVGEID--TPG-CWLIYPSGN-RGFSMLCGDG 157 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT--TEEEEEEE--GTS-EEEEEEEET-TEEEEEETTS
T ss_pred ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC--Cceeeeec--CCC-EEEEEecCC-CceEEEecCC
Confidence 345443444334566789999999998765 445688888853 44444442 222 222222333 4688888999
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
.+.-..++..++.....+ ..+....+..+..-++...+..++..+.. |.|+--|+....
T Consensus 158 sl~~v~Ld~~Gk~~~~~t--------------------~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~-G~v~~~dlsg~~ 216 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKST--------------------KVFDPDDDPLFEHPAYSRDGGRLYFVSYE-GNVYSADLSGDS 216 (342)
T ss_dssp CEEEEEETSTSSEEEEEE--------------------EESSTTTS-B-S--EEETTTTEEEEEBTT-SEEEEEEETTSS
T ss_pred ceEEEEECCCCCEeEeec--------------------cccCCCCcccccccceECCCCeEEEEecC-CEEEEEeccCCc
Confidence 999988886665542111 11222221222344555555566667778 788888887664
Q ss_pred ceeeec-------------CCCCeeEEEEcCCCCEEEEEecC---C-------eEEEEeCCCCCcccccCCCCCeeEEEE
Q 013338 247 GTPIRR-------------GFGGLSILKWSPTGDYFFAAKFD---G-------TFYLWETNTWTSEPWSSTSGFVTGATW 303 (445)
Q Consensus 247 ~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~~d---g-------~v~iwd~~~~~~~~~~~~~~~v~~~~~ 303 (445)
...... -.+.-.-+++++..+.|.+.... + .|+++|+.+++..........+.++..
T Consensus 217 ~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V 296 (342)
T PF06433_consen 217 AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV 296 (342)
T ss_dssp EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE
T ss_pred ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE
Confidence 321110 01344557888766655543221 1 599999999887444444456889999
Q ss_pred CCCCCeEEEE-EcCCceEEEEEe
Q 013338 304 DPEGRMILLA-FAGSLTLGSIHF 325 (445)
Q Consensus 304 sp~~~~l~~~-~~~~~~~~~~~~ 325 (445)
+.+.+-++.+ ...++.+.+++.
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEET
T ss_pred ccCCCcEEEEEcCCCCeEEEEeC
Confidence 9988755544 344555555554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00055 Score=64.37 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=72.4
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCee-EEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP- 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~- 290 (445)
..+.-+.|+|.-.+||.+..+ |.|.++.++-.+.-.+.-+...++ +++|.|||+.|++|-.||+|++.|+.++....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~-gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEK-GELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccC-CcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999988 799999988443333333555555 99999999999999999999999999987632
Q ss_pred -ccCCCCCeeEEEECC
Q 013338 291 -WSSTSGFVTGATWDP 305 (445)
Q Consensus 291 -~~~~~~~v~~~~~sp 305 (445)
.......|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 234456678888873
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.021 Score=51.17 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=88.2
Q ss_pred EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc---
Q 013338 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS--- 292 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~--- 292 (445)
+..|.++...|+.+.--++.|.-|+..+++...+. ..+.+.++..-..+..|+++. ..+++++.+++.. ..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 44678888877766655579999998877554443 334445544443445555553 2366777665554 2221
Q ss_pred --CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc--cccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 293 --STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 293 --~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
......+.+...|+|.+.+..... .............++.+ ....++.+..+- .-+.++||||++.|+.
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~------~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGY------FDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCc------cccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEE
Confidence 123456788999999988855431 00000000000011111 223333344433 5789999999998888
Q ss_pred EEcCCCcccceEEEEEEcc
Q 013338 368 SYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~ 386 (445)
+-... +.|.-|++.
T Consensus 180 aDT~~-----~~i~r~~~d 193 (307)
T COG3386 180 ADTPA-----NRIHRYDLD 193 (307)
T ss_pred EeCCC-----CeEEEEecC
Confidence 75432 677777775
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=42.35 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=66.3
Q ss_pred eeEEEECc---CC-CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 147 VKVLEWRP---NG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 147 v~~l~~sp---d~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
|++|++.. || ..|++++.|..|++|+-+ .++..+... ..|+++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------------------------e~~~Ei~e~--~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------------------------EIVAEITET--DKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------------------------cEEEEEecc--cceEEEEEcC
Confidence 56666643 33 458888889999999866 234444443 5788888776
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcC-C--C-CEEEEEecCCeEE
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-T--G-DYFFAAKFDGTFY 279 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp-~--g-~~l~~~~~dg~v~ 279 (445)
. ..++++-.+ |+|-+|+-... ......+..+.++++.. + | ..|++|-.+|.|-
T Consensus 53 ~-~~F~Y~l~N-GTVGvY~~~~R--lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 G-GRFAYALAN-GTVGVYDRSQR--LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred C-CEEEEEecC-CEEEEEeCcce--eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6 568888777 89999985332 22233445577777543 2 2 3688998898874
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.099 Score=48.72 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=84.1
Q ss_pred CeeEEEEccCCCEEEEEE-----------CCC-eEEEEEccCCCCccee-EEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 101 DLQGVSWHQHKHIVAFIS-----------GST-QVIVRDYEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----------~d~-~i~iw~~~~~~~~~~~-~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
....|+|.++|+++++-. ..+ .|.+++-...+|+... ......-...+.+++.+++ ++++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 356899999999887643 123 6666654334454322 2222234456889999985 555544433
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeeccc---CCCceeEEEECCCCCeEEEEEec-----------
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPDGRYLASASYE----------- 233 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d----------- 233 (445)
.++.+.+........ .-.++..+... .......++|.|||.+.++.+..
T Consensus 93 ~~~~d~~gdg~ad~~-----------------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~ 155 (367)
T TIGR02604 93 LFLRDKDGDDKADGE-----------------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTS 155 (367)
T ss_pred EEEeCCCCCCCCCCc-----------------cEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCc
Confidence 334354422111100 00122222221 11457889999999876654421
Q ss_pred -------CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe
Q 013338 234 -------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 234 -------~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 273 (445)
.|.|..++..+++...+.........++|+|+|+++++-.
T Consensus 156 ~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 156 DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 1345556665555444433445567899999998876543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.018 Score=50.43 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=89.7
Q ss_pred CceeEEEECCCCCeEEEEE--ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEe-CCCCCcc
Q 013338 213 EQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTSE 289 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~--~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd-~~~~~~~ 289 (445)
..+.+.+++++++.++... .+...+.++... ...........+....|++++...++...+...+++. ...++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999988877 332355555433 3322222334888899999987777766666666663 3344332
Q ss_pred --ccc--CCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCccccccCccccccccccC-CCccceEEeCCCC
Q 013338 290 --PWS--STSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASG 362 (445)
Q Consensus 290 --~~~--~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g 362 (445)
.+. .....|+.+.+||||..++.... +...+..-.+.......... ....+..... ...+.+++|.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~----l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR----LTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----eccceEecccccCcceeeeecCCC
Confidence 222 22228999999999999987652 22334333332211110000 0111222222 2278999999999
Q ss_pred CEEEEEEcC
Q 013338 363 ERLAVSYKG 371 (445)
Q Consensus 363 ~~l~~~s~d 371 (445)
.+++.+...
T Consensus 178 ~L~V~~~~~ 186 (253)
T PF10647_consen 178 TLVVLGRSA 186 (253)
T ss_pred EEEEEeCCC
Confidence 887776554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.081 Score=46.32 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=90.3
Q ss_pred CeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 146 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
.+.+.+++++++.+++.. .++.-.+|-....+....+.. ...+....|++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---------------------------g~~l~~PS~d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---------------------------GGSLTRPSWDPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---------------------------CCccccccccCCC
Confidence 688999999988887776 233333443332232222111 2477888999997
Q ss_pred CeEEEEEecCCeEEEEE-ccCCCcee--eecC--CCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCCC---cc----
Q 013338 225 RYLASASYESSSFTIWD-VAQGLGTP--IRRG--FGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWT---SE---- 289 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd-~~~~~~~~--~~~~--~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~~---~~---- 289 (445)
...+....+ ...+++. ...+.... +... ...|..+.+||||..++... .++.|++--+.... ..
T Consensus 78 ~~W~v~~~~-~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 78 WVWTVDDGS-GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CEEEEEcCC-CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 666665544 3556653 33443322 2221 22899999999999987665 34677776543211 11
Q ss_pred --c-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 290 --P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 290 --~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
. .......++.+.|.+++.+++.+...+.....
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 1 11335678999999999988877555443333
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.048 Score=51.90 Aligned_cols=103 Identities=23% Similarity=0.387 Sum_probs=66.3
Q ss_pred eeEEEECCCCCeEEEEEecCC----eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC-----------eEE
Q 013338 215 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----------TFY 279 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g----~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-----------~v~ 279 (445)
+....+||+|++++.+-..+| .++++|+.+++...-.-.......+.|.++++.|+....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 446789999999998754434 59999999986543221111222399999998887664332 488
Q ss_pred EEeCCCCCcc--cc-cCCCC-C-eeEEEECCCCCeEEEEEcCC
Q 013338 280 LWETNTWTSE--PW-SSTSG-F-VTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 280 iwd~~~~~~~--~~-~~~~~-~-v~~~~~sp~~~~l~~~~~~~ 317 (445)
.|.+.+.... .+ ..... . ...+..++|+++|++.....
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 8888876553 22 22222 2 56888999999988654443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.18 Score=47.19 Aligned_cols=232 Identities=11% Similarity=0.080 Sum_probs=113.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc----------------------------------------eeEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD----------------------------------------ACILT 140 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~----------------------------------------~~~~~ 140 (445)
.|+.++|+++..-||+|...|.|.||.+....... ...+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998775321100 00112
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc-----cCCCce
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-----QNGEQI 215 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v 215 (445)
....++|++++.|.- +.++++..+|.+.|.|++...... ...+.. .....+
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~-----------------------~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIY-----------------------NENIRESFLSKSSSSYV 138 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEE-----------------------EEEGGG--T-SS----E
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEe-----------------------eccccccccccccccCe
Confidence 234688999999855 577777778999999997222111 111111 223567
Q ss_pred eEEEECC-----CC---CeEEEEEecCCeEEEEEccC--CC-c----eeee-cCCCCeeEEE-EcCC-C-----------
Q 013338 216 TALSWGP-----DG---RYLASASYESSSFTIWDVAQ--GL-G----TPIR-RGFGGLSILK-WSPT-G----------- 266 (445)
Q Consensus 216 ~~~~~sp-----~~---~~l~~~~~d~g~v~vwd~~~--~~-~----~~~~-~~~~~v~~~~-~sp~-g----------- 266 (445)
+++.|+- |+ -.+++|... |.+.+|.+-- +. . .... .+.+.|..+. ++.+ |
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~-G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~ 217 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNS-GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQ 217 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETT-SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHH
T ss_pred eEEEEEEEecCCCcccceEEEEEeCC-CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhh
Confidence 7787752 22 235555544 8999998752 11 1 1111 3445555554 3221 1
Q ss_pred --------CEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEEC----CCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 267 --------DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 267 --------~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~s----p~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+-+++...+..++++...+.+.. +..........+.+- ..+...+++...++.+..+.+-+
T Consensus 218 ~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~------ 291 (395)
T PF08596_consen 218 GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS------ 291 (395)
T ss_dssp GGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------
T ss_pred ccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC------
Confidence 12344444778999999887762 222222233344453 12333444545555566555432
Q ss_pred ccccCccccccccccC----CC-ccceEEeCCCCCEEEEEEc
Q 013338 334 AHLLPVDLPDIVSLTG----SQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~----~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
.+++..+.- +. .+....++++|..++-.+.
T Consensus 292 -------Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 292 -------LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp ---------EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred -------chHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 222222222 11 4677888999998877654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.04 Score=40.40 Aligned_cols=66 Identities=14% Similarity=0.068 Sum_probs=49.2
Q ss_pred eeEEEEcc---CC-CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp---~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
|+++++.. || .-|++|+.|..|+||+- ...+..+. ....|.+|+-... ++++++-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~----~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG----DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC----CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 56676654 33 57888999999999974 33344443 5677888888877 788888899999999764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.06 Score=46.69 Aligned_cols=186 Identities=13% Similarity=0.016 Sum_probs=101.0
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
+++..+++++.++.+..||.. +|+.+..... ...+..... .+++.+++...++.+..+|..++...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~--tG~~~W~~~~--~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~--------- 99 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAK--TGKVLWRFDL--PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVL--------- 99 (238)
T ss_dssp EETTEEEEEETTSEEEEEETT--TSEEEEEEEC--SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEE---------
T ss_pred EeCCEEEEEcCCCEEEEEECC--CCCEEEEeec--cccccceee-ecccccccccceeeeEecccCCccee---------
Confidence 356667777899999999984 4766555542 222222122 23367777778888999997633221
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC-C----------e
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-G----------L 257 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~-~----------v 257 (445)
|.......... ..........++..++++..+ |.|..+|+++|+......... . +
T Consensus 100 ------------W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 100 ------------WSIYLTSSPPA-GVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp ------------EEEEE-SSCTC-STB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred ------------eeecccccccc-ccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 11100000000 111112222236777777767 799999999998744332211 1 1
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..-....++ .+..++.++.+..+|+.+++... ......+... ...++..|+++. .++.+..+++.
T Consensus 166 ~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 166 NGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp EEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETT
T ss_pred ccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECC
Confidence 122222244 77777778754444999998542 2222233331 345677777665 55666666653
|
... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.073 Score=52.46 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=121.7
Q ss_pred ccCCCEEEEEECCC------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC------CcEEEEccCC
Q 013338 108 HQHKHIVAFISGST------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSY 175 (445)
Q Consensus 108 sp~g~~la~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d------g~i~vw~~~~ 175 (445)
+..+.+++.|+..+ .+..+|... +.............-.+++...+ ..+++||.+ ..+..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~--~~w~~~a~m~~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKT--NEWSSLAPMPSPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCc--CcEeecCCCCcccccccEEEECC-EEEEEccccCCCcccceEEEecCCC
Confidence 33456677777653 566777643 32222222223444455666555 556666666 2455666652
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-----eEEEEEccCCCceee
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-----SFTIWDVAQGLGTPI 250 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g-----~v~vwd~~~~~~~~~ 250 (445)
++|.....+.... ....... -+|...++|+.| | ++..||..+.+....
T Consensus 359 -----------------------~~W~~~a~M~~~R-~~~~v~~--l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 359 -----------------------NQWTPVAPMNTKR-SDFGVAV--LDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred -----------------------CceeccCCccCcc-ccceeEE--ECCEEEEEeccc-cccccccEEEecCCCCccccc
Confidence 2344333333221 1112222 267788888877 4 578899888876554
Q ss_pred ecCCCCeeEEEE-cCCCCEEEEEecCC------eEEEEeCCCCCcccccC---CCCCeeEEEECCCCCeEEEEEcCC-ce
Q 013338 251 RRGFGGLSILKW-SPTGDYFFAAKFDG------TFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGS-LT 319 (445)
Q Consensus 251 ~~~~~~v~~~~~-sp~g~~l~~~~~dg------~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~-~~ 319 (445)
..........+. .-+|+..++|+.++ ++..||..+.+...+.. ..... .++.- ++...++|+..+ ..
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSA 489 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCc
Confidence 433322222222 22677778887654 68899999887643332 11122 23322 344444443221 22
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
...+..++.... .+..+..+.... .+..+.+ +++..++|+.++.... ++|..||..+++..
T Consensus 490 ~~~VE~ydp~~~--------~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l-~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 490 LSSVERYDPETN--------QWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL-NTVECYDPETDTWT 551 (571)
T ss_pred cceEEEEcCCCC--------ceeEcccCccccccccEEEE--CCEEEEEecccCcccc-ceeEEcCCCCCcee
Confidence 333444433211 112222222222 1222222 5667777776654433 67888888776544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.09 Score=49.63 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=37.3
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
.|.+|+........+.-..+.+.++.|+.+. .|++...||.+++||+....
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence 4889987766544443334899999998754 56666789999999997544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.19 Score=45.91 Aligned_cols=202 Identities=11% Similarity=0.093 Sum_probs=100.3
Q ss_pred EEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE
Q 013338 150 LEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 228 (445)
Q Consensus 150 l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 228 (445)
=+|.+||++|+.++. +|.-.+|-++..... +..+............++|+++.++
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~------------------------i~QLTdg~g~~~~g~~~s~~~~~~~ 96 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGE------------------------ITQLTDGPGDNTFGGFLSPDDRALY 96 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-E------------------------EEE---SS-B-TTT-EE-TTSSEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCE------------------------EEECccCCCCCccceEEecCCCeEE
Confidence 367889988888765 555555544422211 1112211112233567789888887
Q ss_pred EEEecCCeEEEEEccCCCceeeecCC-CCeeEEEEc--CCCCEEEEEec----------------------CCeEEEEeC
Q 013338 229 SASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWS--PTGDYFFAAKF----------------------DGTFYLWET 283 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~~~~~~-~~v~~~~~s--p~g~~l~~~~~----------------------dg~v~iwd~ 283 (445)
..... ..|+-.|+++.+...+..-. ..+-...|. .++..++..-. ...|.-.|+
T Consensus 97 Yv~~~-~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 97 YVKNG-RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEETT-TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEECC-CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 76555 38999999998876655543 344345554 45666543211 135777788
Q ss_pred CCCCcccccCCCCCeeEEEECCCCCeEE-EEEcC-----CceEEEEEeccCCCCccccccCccccccccccCCC---ccc
Q 013338 284 NTWTSEPWSSTSGFVTGATWDPEGRMIL-LAFAG-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIE 354 (445)
Q Consensus 284 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 354 (445)
.+++...+......+..+.|+|....++ .|..+ +.+++.++. ++...+.+..+. .+.
T Consensus 176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--------------dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--------------DGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--------------TS---EESS---TTEEEE
T ss_pred CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--------------CCCcceeeecCCCCcccc
Confidence 8988877777778889999999766554 55443 224444443 222222222222 455
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.=-|.|||..|..-+.-.. +.+..|.-+|+.+++..
T Consensus 242 HEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EE
T ss_pred cccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCce
Confidence 5679999988776443111 12256777888876543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.004 Score=58.81 Aligned_cols=92 Identities=24% Similarity=0.371 Sum_probs=66.8
Q ss_pred CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee-EEEECC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGP 222 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp 222 (445)
...+.-+.|+|.-..++....+|.+.+..++ |..+-++.-+. ..++ +++|.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--------------------------~qRlwtip~p~-~~v~~sL~W~~ 72 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--------------------------WQRLWTIPIPG-ENVTASLCWRP 72 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--------------------------cceeEeccCCC-CccceeeeecC
Confidence 4568889999986666666778888887765 11222233232 4555 999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceee--ecCCCCeeEEEEc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPI--RRGFGGLSILKWS 263 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~--~~~~~~v~~~~~s 263 (445)
||+.|++|-.| |+|++.|+.++....- ..-...|.++-|+
T Consensus 73 DGkllaVg~kd-G~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 73 DGKLLAVGFKD-GTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCCEEEEEecC-CeEEEEEccCCCceeccccccccchheeecc
Confidence 99999999999 8999999998876544 3345677777776
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.12 Score=47.25 Aligned_cols=191 Identities=11% Similarity=0.089 Sum_probs=99.0
Q ss_pred CCeEEEEEe--------cC-CeEEEEEccCC-----Ccee--eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC
Q 013338 224 GRYLASASY--------ES-SSFTIWDVAQG-----LGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 224 ~~~l~~~~~--------d~-g~v~vwd~~~~-----~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
..+|++|.. .+ |.|.++++... +... .....+.|++++-- +++ |+++. .+.|++|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 466777653 12 78999999884 2222 23447889988865 444 55444 5889999999888
Q ss_pred -ccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE
Q 013338 288 -SEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER 364 (445)
Q Consensus 288 -~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 364 (445)
..... .....+.++... +++++++... ..+..+.+..... ....+..-.....++++.|-++++.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~-~sv~~~~~~~~~~---------~l~~va~d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAM-KSVSLLRYDEENN---------KLILVARDYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESS-SSEEEEEEETTTE----------EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcc-cCEEEEEEEccCC---------EEEEEEecCCCccEEEEEEecCCcE
Confidence 53322 223355665554 5577766433 3344444322100 1111111111226888888877777
Q ss_pred EEEEEcCCCcccceEEEEEEccCC-----Cee-eeeeeeeeeCCCCCCCce---eEeec--CCC-CCCCeEEEEecCeee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT-----PLI-SLSLIGFIRGPGDNPKPV---AFSFH--DKF-KQGPLLSVCWSSGFC 432 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~-----~~~-~~~~~~~~~~~~~~v~~v---~~spd--g~~-~~~~~l~~~~~~G~v 432 (445)
++.+..+ |.+.++..... ... .......+. .++.|+++ ++.|. +.- .....+..+..+|.|
T Consensus 187 ~i~~D~~------gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~I 259 (321)
T PF03178_consen 187 IIVGDKD------GNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSI 259 (321)
T ss_dssp EEEEETT------SEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-E
T ss_pred EEEEcCC------CeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEE
Confidence 7777666 88999987631 000 112222222 34556666 44453 111 012346677788888
Q ss_pred E-eee
Q 013338 433 C-TYP 436 (445)
Q Consensus 433 ~-~~~ 436 (445)
. +.+
T Consensus 260 g~l~p 264 (321)
T PF03178_consen 260 GVLIP 264 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 7 555
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.031 Score=56.10 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=85.5
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-----CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR 195 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-----d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
..+.-.|+ ..|+.+.........+|..++=.. +....+.|-.++.+..||.+..+.. .+..
T Consensus 504 ~~ly~mDL--e~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~----------- 569 (794)
T PF08553_consen 504 NKLYKMDL--ERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS----------- 569 (794)
T ss_pred CceEEEec--CCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec-----------
Confidence 44444454 457766655433333455443221 1234567777889999999854411 1110
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEec
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~ 274 (445)
..+.+. ......|++-+.+| +||+|+.+ |.|++||--..+... +.+...+|.+|..+.||++|++.+
T Consensus 570 -------~~k~Y~--~~~~Fs~~aTt~~G-~iavgs~~-G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc- 637 (794)
T PF08553_consen 570 -------QSKQYS--SKNNFSCFATTEDG-YIAVGSNK-GDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC- 637 (794)
T ss_pred -------cccccc--cCCCceEEEecCCc-eEEEEeCC-CcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-
Confidence 011111 23567888888776 68899988 899999954333233 334578999999999999988766
Q ss_pred CCeEEEEeCC
Q 013338 275 DGTFYLWETN 284 (445)
Q Consensus 275 dg~v~iwd~~ 284 (445)
+..+.+++..
T Consensus 638 ~tyLlLi~t~ 647 (794)
T PF08553_consen 638 KTYLLLIDTL 647 (794)
T ss_pred cceEEEEEEe
Confidence 5677788763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.19 Score=43.66 Aligned_cols=194 Identities=12% Similarity=0.169 Sum_probs=117.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
..|.++.|+|+.+.|.+..+...-.|+- . .+|..+.++....-...-.+.+..++ .++.+. .++.+.++.++....
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVEl-t-~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVEL-T-KEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEE-e-cCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCCcc
Confidence 3589999999999988877666655553 3 35777777654333445678888774 444444 468888888874433
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-ee--e-ecC-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP--I-RRG- 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~--~-~~~- 253 (445)
...+... + ..+...... +...-.++|+|..+.|+.+-..+ -+.||....... .. . ..+
T Consensus 163 ~~~~~~~--------------~-i~L~~~~k~-N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 163 VISAKVQ--------------K-IPLGTTNKK-NKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred EEeccce--------------E-EeccccCCC-CcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcc
Confidence 3222211 0 011111111 36788999999999898887774 777777664321 11 1 111
Q ss_pred ------CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCccccc---------CCCCCeeEEEECCCCCeEEEE
Q 013338 254 ------FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS---------STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 254 ------~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~ 313 (445)
-..|.++.|++. +..|+.+.+++.+.-.|....-...+. ..-.....++...+|...+++
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 135677888875 566677777777777777654322111 112234567777777665544
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.55 Score=47.68 Aligned_cols=189 Identities=12% Similarity=0.047 Sum_probs=93.8
Q ss_pred CeeEEEEccCCCEEEEEECC-----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC------CcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d------g~i~ 169 (445)
.+..+.|||||++||.+... ..+++.++. ++..+.... ...-..++|++|++.++.+..+ ..|.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~--tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE--TGNWYPELL---DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC--CCCCCCccc---cCcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 57888999999999986422 246666664 454222221 1112569999998888877653 2455
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee-EEEECCCCCeEEEEEecC--CeEEEEEcc--C
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYES--SSFTIWDVA--Q 244 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~--g~v~vwd~~--~ 244 (445)
.+++.+...... ++ +.... .... ....+.++++++..+..+ +.+.+++.. .
T Consensus 203 ~h~lgt~~~~d~---------------------lv--~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~ 258 (686)
T PRK10115 203 RHTIGTPASQDE---------------------LV--YEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELAD 258 (686)
T ss_pred EEECCCChhHCe---------------------EE--EeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCC
Confidence 556553311110 11 11111 2222 333344788766554331 478888853 3
Q ss_pred CCceeeecCC-CCeeEEEEcCCCCEEEEEecC---CeEEEEeCC-CCCcccccCC--CCCeeEEEECCCCCeEEEEEcCC
Q 013338 245 GLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD---GTFYLWETN-TWTSEPWSST--SGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 245 ~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~-~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
+....+.... .....+. +..+.+++....+ ..|...++. .++...+..+ ...+..+.+. +++|+.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~ 335 (686)
T PRK10115 259 AEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQR 335 (686)
T ss_pred CCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeC
Confidence 3333333332 2223332 3233333333222 244444554 2233344444 2367777776 44565554444
Q ss_pred ceEE
Q 013338 318 LTLG 321 (445)
Q Consensus 318 ~~~~ 321 (445)
+...
T Consensus 336 g~~~ 339 (686)
T PRK10115 336 GLTS 339 (686)
T ss_pred CEEE
Confidence 4333
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.14 Score=46.77 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=66.3
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeecCC--CCeeEEEEcCCCCEEEEEecCCeEEEEeCC--CC
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETN--TW 286 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~~~--~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~--~~ 286 (445)
+++|++++-- +++ |+++. . +.|.+|++...+ ........ ..+.++.. .++++++|..-..+.++..+ ..
T Consensus 88 ~g~V~ai~~~-~~~-lv~~~-g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 88 KGPVTAICSF-NGR-LVVAV-G-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp SS-EEEEEEE-TTE-EEEEE-T-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE
T ss_pred cCcceEhhhh-CCE-EEEee-c-CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCC
Confidence 3788888765 444 54443 4 489999999887 44443333 34555554 46799999988888877444 33
Q ss_pred Cccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 287 TSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 287 ~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
+...+. .....++++.|-++++.++ +++..+.+..++..
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYN 202 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEEC
Confidence 332222 3455688888886766444 56677777777764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=36.08 Aligned_cols=37 Identities=38% Similarity=0.835 Sum_probs=30.7
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
+...+..|. ..|.++.|++++..+++++.| |.+++|+
T Consensus 4 ~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d-~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT-GPVTSVAFSPDGKYLASASDD-GTIKLWD 40 (40)
T ss_pred EEEEEEecC-CceeEEEECCCCCEEEEecCC-CeEEEcC
Confidence 444556665 789999999999999999999 6999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.34 Score=44.82 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=93.5
Q ss_pred CCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc---cC---CCceeEEEECCCCCeE
Q 013338 155 NGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS---QN---GEQITALSWGPDGRYL 227 (445)
Q Consensus 155 d~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~v~~~~~sp~~~~l 227 (445)
+.++|++.+- .+.|.|.|+.+...... +.+.++. +. -.....+..-|+|+.+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~---------------------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR---------------------LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E---------------------EEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc---------------------eEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 3355666664 48999999873322211 2222221 00 0223344455889888
Q ss_pred EEEEec-----CCeEEEEEccCCCceeeecC----CCCeeEEEEcCCCCEEEEEec--------------------CCeE
Q 013338 228 ASASYE-----SSSFTIWDVAQGLGTPIRRG----FGGLSILKWSPTGDYFFAAKF--------------------DGTF 278 (445)
Q Consensus 228 ~~~~~d-----~g~v~vwd~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~--------------------dg~v 278 (445)
+++-.+ .|.+.++|-++.+....-.. ...-+.+-|.|..+.+++..- ..++
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 876332 15788888776554332221 234567788888888887632 2589
Q ss_pred EEEeCCCCCcccccCCC---CCeeEEEE--CCCCCeEEEEEcCCceEEEEEeccCC-CCccccccCccccc---------
Q 013338 279 YLWETNTWTSEPWSSTS---GFVTGATW--DPEGRMILLAFAGSLTLGSIHFASKP-PSLDAHLLPVDLPD--------- 343 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~---~~v~~~~~--sp~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------- 343 (445)
.+||+.+.+..+..... ..+..+.| .|+..+=++++.-.+.++.|.-.+.. +..+ +...+..+.
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~-kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE-KVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE-EEEEE--EE--SS---GG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee-EEEECCCcccCccccccc
Confidence 99999999885443222 23445655 45666666666655666665542211 1000 011111110
Q ss_pred cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 344 IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 344 ~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
++.+..-. -|+++..|.|.++|..+.... |.|+.||+....
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~-----GdvrqYDISDP~ 345 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSNWLH-----GDVRQYDISDPF 345 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEETTT-----TEEEEEE-SSTT
T ss_pred ccccccCCCceEeEEEccCCCEEEEEcccC-----CcEEEEecCCCC
Confidence 11111111 489999999999999987653 889999998543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0031 Score=36.00 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.7
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEe
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 282 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 282 (445)
..+...|.++.|++++..+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35677899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.25 Score=46.34 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=70.7
Q ss_pred EEEeecccCCCceeEEEECCCCCe-------EEEEEecCCeEEEEEccCCCc--eeee-cC----CCCeeEEEEcCCCCE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRY-------LASASYESSSFTIWDVAQGLG--TPIR-RG----FGGLSILKWSPTGDY 268 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~-------l~~~~~d~g~v~vwd~~~~~~--~~~~-~~----~~~v~~~~~sp~g~~ 268 (445)
++....-+. .|+-+.+.|+.+. -+.|-.+ ..|.-||.+-... .... .+ .....|.+-..+| +
T Consensus 368 IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~-n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~ 443 (644)
T KOG2395|consen 368 IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSD-NSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y 443 (644)
T ss_pred eeeEeeccC--CcceeeccCCcchhcccccccEEeecC-CceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence 333444442 3666777775432 2334445 4899999874322 1111 11 2345556555444 7
Q ss_pred EEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 269 FFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
|++|+.+|.|++||.-.... ..+.+.+.+|..+..+.+|++|++.+.
T Consensus 444 IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 444 IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 99999999999999833333 456788899999999999999998765
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.39 Score=44.01 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=32.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc---eeEE---ecCCCCCeeEEEECcC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD---ACIL---TSDSQRDVKVLEWRPN 155 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~---~~~~---~~~~~~~v~~l~~spd 155 (445)
-++|+|.|||+++++ ...|.|++++. ++.. ...+ ..........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~---~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDK---DGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEET---TTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeC---CCcCcceecccccccccccCCcccceeccc
Confidence 468999999988774 56999999883 2332 1111 1234557899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.49 Score=44.65 Aligned_cols=142 Identities=9% Similarity=-0.092 Sum_probs=76.4
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC---------Ce-eEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---------DV-KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---------~v-~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+..+++++.++.+.-+|.+ +|+.+-........ .+ ..+.. +++.+++++.++.+..+|..+++..=
T Consensus 69 ~~~vy~~~~~g~l~ald~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 69 YNKVYAADRAGLVKALDAD--TGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred CCEEEEECCCCeEEEEECC--CCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 4456666677777666664 45544433211100 00 01111 23577777788999999987433211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCcee-EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe--
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL-- 257 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v-- 257 (445)
... +. ..+. +... .+..++++..+ |.+..+|.++|+...........
T Consensus 145 ~~~-----------------------~~----~~~~ssP~v--~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 145 QTK-----------------------VA----GEALSRPVV--SDGLVLVHTSN-GMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred ccc-----------------------CC----CceecCCEE--ECCEEEEECCC-CEEEEEEccCCCEeeeecCCCCccc
Confidence 110 00 1111 1111 13456666666 69999999999775444322111
Q ss_pred ----eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 258 ----SILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 258 ----~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+... .+..++.++.++.+..+|..+++.
T Consensus 195 ~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 195 LRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred ccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChh
Confidence 11111 234567778899999999998876
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.44 Score=43.68 Aligned_cols=254 Identities=16% Similarity=0.185 Sum_probs=116.7
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-- 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-- 223 (445)
..++|+|.|| +.++++-..|.|++++.. ......+.. ...+..........++++|+
T Consensus 3 ~P~~~a~~pd-G~l~v~e~~G~i~~~~~~-g~~~~~v~~-------------------~~~v~~~~~~gllgia~~p~f~ 61 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLVAERSGRIWVVDKD-GSLKTPVAD-------------------LPEVFADGERGLLGIAFHPDFA 61 (331)
T ss_dssp SEEEEEEETT-SCEEEEETTTEEEEEETT-TEECEEEEE--------------------TTTBTSTTBSEEEEEE-TTCC
T ss_pred CceEEEEeCC-CcEEEEeCCceEEEEeCC-CcCcceecc-------------------cccccccccCCcccceeccccC
Confidence 4678999999 567777778999999832 111011110 00111222367899999994
Q ss_pred -CCeEEEEEe-c------C-CeEEEEEccCC--C---ceee----ec---CCCCeeEEEEcCCCCEEEEEecC-------
Q 013338 224 -GRYLASASY-E------S-SSFTIWDVAQG--L---GTPI----RR---GFGGLSILKWSPTGDYFFAAKFD------- 275 (445)
Q Consensus 224 -~~~l~~~~~-d------~-g~v~vwd~~~~--~---~~~~----~~---~~~~v~~~~~sp~g~~l~~~~~d------- 275 (445)
..+|+.... . . ..|.-|.+..+ . ...+ .. ....-..|+|.|||.+.++.+..
T Consensus 62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~ 141 (331)
T PF07995_consen 62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQ 141 (331)
T ss_dssp CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGC
T ss_pred CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccccc
Confidence 334443332 1 0 14555555444 1 1111 11 23445679999999766665432
Q ss_pred ------CeEEEEeCCCCCc--ccc------------cCCCCCeeEEEECCC-CCeEEEEEcCCceEEEEEeccCC---CC
Q 013338 276 ------GTFYLWETNTWTS--EPW------------SSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASKP---PS 331 (445)
Q Consensus 276 ------g~v~iwd~~~~~~--~~~------------~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~~~~~~~---~~ 331 (445)
|.|.-.+....-. ... .++. ....++|+|. |++.++=...+..+..-.+.... +.
T Consensus 142 ~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP 220 (331)
T PF07995_consen 142 DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP 220 (331)
T ss_dssp STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred ccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence 3344444332200 000 0122 2457899999 66665433333222222221110 00
Q ss_pred ccc-------------cccCccccccccccCCCccceEEeCC-------CCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 332 LDA-------------HLLPVDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 332 ~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~sp-------~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
... ........++..+..|..+..+.|-. .|+++++.-.. +.|....++.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~------~~i~~~~~~~~~~~ 294 (331)
T PF07995_consen 221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGG------GRIWRLDLDEDGSV 294 (331)
T ss_dssp TBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTT------TEEEEEEEETTEEE
T ss_pred CCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCC------CEEEEEeeecCCCc
Confidence 000 00000111233444555666777653 34455544332 67777777644322
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
......+......+.++++.|||.+ +...-.+|.|.
T Consensus 295 -~~~~~~~~~~~~r~~~v~~~pDG~L-----yv~~d~~G~iy 330 (331)
T PF07995_consen 295 -TEEEEFLGGFGGRPRDVAQGPDGAL-----YVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEECTTSSS-EEEEEEETTSEE-----EEEE-TTTTEE
T ss_pred -cceEEccccCCCCceEEEEcCCCeE-----EEEECCCCeEe
Confidence 1112223344557889999999874 33333577764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.064 Score=50.89 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=69.5
Q ss_pred CceeEEEECCC----CCeEEEEEecCCeEEEEEccCC-----Cceeee--cC----CCCeeEEEEcCCCCEEEEEecCCe
Q 013338 213 EQITALSWGPD----GRYLASASYESSSFTIWDVAQG-----LGTPIR--RG----FGGLSILKWSPTGDYFFAAKFDGT 277 (445)
Q Consensus 213 ~~v~~~~~sp~----~~~l~~~~~d~g~v~vwd~~~~-----~~~~~~--~~----~~~v~~~~~sp~g~~l~~~~~dg~ 277 (445)
..|..+.|.|- ...|++.... ..|.+|.+... +....+ .. .--...+.|+|....|++-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHk-khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHK-KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEecc-ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 57899999984 2234444445 38999998622 111111 11 112356889999998887776655
Q ss_pred EEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 278 FYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 278 v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
-.+++++.... +.-....+.|.|.+|.+||+.|+++.+..-..++|
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiW 183 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIW 183 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEe
Confidence 55667665443 22225667899999999999999886544333333
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.42 Score=41.57 Aligned_cols=158 Identities=14% Similarity=0.182 Sum_probs=94.4
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
+....+.++.|+|+.+.|+++.....-.|+-...+.....+. +.+- ...-.+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-----------------------L~g~--~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-----------------------LTGF--SDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-----------------------cccc--CChhHeEEe
Confidence 344559999999998888888776655555433222222211 1221 344567777
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCc--------eeee--cC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-c
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLG--------TPIR--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~--------~~~~--~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
-+|++.++--.+ +.+.++.+..+.. .++. .+ ....-.++|+|..+.|+.+-+-.-+.||.+..... .
T Consensus 138 g~n~fvi~dER~-~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERD-RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhc-ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence 777766665556 5888877765422 1111 12 45677899999999999998888777776654331 1
Q ss_pred ---cccCC-------CCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 290 ---PWSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 290 ---~~~~~-------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
....+ -..+.++.|++....+++-+..+..+-.+..
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 11111 2346778898766666555555544444443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.22 Score=44.35 Aligned_cols=146 Identities=11% Similarity=0.117 Sum_probs=84.7
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------------
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------------ 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------------ 290 (445)
.++.|+.|..+ | +.++++..............|..+...|+-+.|++-+ |+.++++++..-....
T Consensus 6 ~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 56789998766 6 9999984333322223334499999999877777665 5999999988654422
Q ss_pred ---ccCCCCCeeEEE---ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc-cccccccCCCccceEEeCCCCC
Q 013338 291 ---WSSTSGFVTGAT---WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 291 ---~~~~~~~v~~~~---~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
.......+...+ -...+..|+++... .+..+....... .. ...+++.-...+.+++|. ++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~---------~f~~~~ke~~lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRN---------SFSKLLKEISLPDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECC--EEEEEEEECCcc---------cccceeEEEEcCCCcEEEEEe--CC
Confidence 111222344444 22334556655443 333333222100 11 334444444578889988 55
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.++.+.. ....+.|+.++...
T Consensus 150 ~i~v~~~-------~~f~~idl~~~~~~ 170 (275)
T PF00780_consen 150 KICVGTS-------KGFYLIDLNTGSPS 170 (275)
T ss_pred EEEEEeC-------CceEEEecCCCCce
Confidence 6777654 34778888765443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.55 Score=42.01 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=75.4
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
...+.+..+.-+++|++++++..-....-||.-...-... ......|.+|.|+|++...+++.. +.+..-+..+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~G--g~~~~s~~~~--- 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARG--GQIQFSDDPD--- 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETT--TEEEEEE-TT---
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCC--cEEEEccCCC---
Confidence 3457788999999999998887666666777654333222 234678999999999888776522 3333222000
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCce
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v 409 (445)
....+ . +.+..+.... .+.+++|.+++...|+|+.+ . .+...+.|+.=+ .......-....+.|
T Consensus 217 --~~~~w--~-~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~-l~~S~DgGktW~--~~~~~~~~~~n~~~i 281 (302)
T PF14870_consen 217 --DGETW--S-EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------T-LLVSTDGGKTWQ--KDRVGENVPSNLYRI 281 (302)
T ss_dssp --EEEEE------B-TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESSTTSS-E--E-GGGTTSSS---EE
T ss_pred --Ccccc--c-cccCCcccCceeeEEEEecCCCCEEEEeCCc-------c-EEEeCCCCccce--ECccccCCCCceEEE
Confidence 00000 0 0111122222 68999999999888877653 2 344455554321 111112234567888
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.|.++.+ -+++| ++|.+..|
T Consensus 282 ~f~~~~~-----gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 282 VFVNPDK-----GFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEETTE-----EEEE--STTEEEEE
T ss_pred EEcCCCc-----eEEEC-CCcEEEEe
Confidence 8876533 35555 67777655
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.43 Score=40.00 Aligned_cols=141 Identities=18% Similarity=0.276 Sum_probs=79.7
Q ss_pred CCCeeEEEEcCCCCEEEEEecC---------CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFD---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
+.+.++-..+|+|++++-...| |.++.|-... +...+...-.--+.++|+.+.+.+...-+ ..+.+.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDS---LNYEVD 183 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEcc---CceEEe
Confidence 4567778889999995533222 3455553322 22222222233467899988888876533 234444
Q ss_pred ecc--CCC---CccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 325 FAS--KPP---SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 325 ~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
.|+ .+. .....++++ +..+.+ .+...-.++...+|.+.+++... ++|...|..+|+++. .+
T Consensus 184 a~dyd~~tG~~snr~~i~dl--rk~~~~-e~~~PDGm~ID~eG~L~Va~~ng------~~V~~~dp~tGK~L~-----ei 249 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDL--RKSQPF-ESLEPDGMTIDTEGNLYVATFNG------GTVQKVDPTTGKILL-----EI 249 (310)
T ss_pred eeecCCCcccccCcceeEEe--ccCCCc-CCCCCCcceEccCCcEEEEEecC------cEEEEECCCCCcEEE-----EE
Confidence 443 111 111111111 111111 11134556667788888887777 899999999999874 44
Q ss_pred eCCCCCCCceeEe
Q 013338 400 RGPGDNPKPVAFS 412 (445)
Q Consensus 400 ~~~~~~v~~v~~s 412 (445)
.-....|++++|-
T Consensus 250 klPt~qitsccFg 262 (310)
T KOG4499|consen 250 KLPTPQITSCCFG 262 (310)
T ss_pred EcCCCceEEEEec
Confidence 4457778888884
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.77 Score=42.59 Aligned_cols=135 Identities=10% Similarity=0.062 Sum_probs=65.0
Q ss_pred eEEEEEccCCCceeeecCC---CCeeEEEEcCC--CCE-EEEEecCCeEEEEeC-CCCCc-----cccc-----------
Q 013338 236 SFTIWDVAQGLGTPIRRGF---GGLSILKWSPT--GDY-FFAAKFDGTFYLWET-NTWTS-----EPWS----------- 292 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~--g~~-l~~~~~dg~v~iwd~-~~~~~-----~~~~----------- 292 (445)
++.+||+.+.+.++..... ..+..+.|..+ ..+ ++.+...++|..|-- +.++- ..+.
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 8999999998887665442 34667777644 444 333334555655533 33321 1111
Q ss_pred ------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccc----cccccCCC---ccceEEeC
Q 013338 293 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD----IVSLTGSQ---GIEKIAWD 359 (445)
Q Consensus 293 ------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~v~~~~~s 359 (445)
....-|+.|..|.|.++|++++=..+.++.+++.+....+......+.+.. ....++.. ...-+..|
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS 382 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLS 382 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEc
Confidence 113557999999999999999988888999998775322211111111100 01111111 46778899
Q ss_pred CCCCEEEEEEc
Q 013338 360 ASGERLAVSYK 370 (445)
Q Consensus 360 p~g~~l~~~s~ 370 (445)
-||++|+..++
T Consensus 383 ~DGkRlYvTnS 393 (461)
T PF05694_consen 383 LDGKRLYVTNS 393 (461)
T ss_dssp TTSSEEEEE--
T ss_pred cCCeEEEEEee
Confidence 99999987653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.5 Score=40.24 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=46.4
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCee-EEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~-~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
-|++++.|...|.+.+.+.. +|.....+.. -+.|. .....++++.+..++.|++....|..+.+.....
T Consensus 62 vgdfVV~GCy~g~lYfl~~~--tGs~~w~f~~--~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVK--TGSQIWNFVI--LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEec--chhheeeeee--hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 57789999999999888885 4654444322 12222 2345677778888888999988888765544443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.01 Score=36.16 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=27.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
.|.+++|+|...+||.++.+|.|.|+.++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 58999999999999999999999999873
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.038 Score=51.53 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=85.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC-Cccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 334 (445)
.|+.+.|.++...|+++...|.|.||.....+... ......-..+.+.+-+ ..+ ......++.+... ....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~~-----~~~--~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRFS-----LNN--SPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------GGG--SS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCccccccc-----ccC--CCcceEEehhhCCccccc
Confidence 57899999999999999999999999776543321 0000001111111100 000 0011112211100 0000
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee--ee-CCCCCCCcee
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--IR-GPGDNPKPVA 410 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~--~~-~~~~~v~~v~ 410 (445)
...+..-+.... .|++++.| |=-++|.|+++ |.+.|.|++...++....+.. .. .....|+++.
T Consensus 75 -----gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~------G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 75 -----GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYES------GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp -----EEEEEEEE---S-SEEEEEE--BTSEEEEEETT------SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred -----ccCchhheeccCCcEeEEecC-CCcEEEEEecC------CcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 111122222233 79999997 55689999988 999999998776665434433 11 1345678898
Q ss_pred Eee---cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 411 FSF---HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 411 ~sp---dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|+. .+.-....+|.||.+.|.+..|.|+-
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 984 22222446888999999999999964
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=34.29 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
...|..++|+|....||.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.14 Score=50.28 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=75.6
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEE--CcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW--RPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~--spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
-+.-|.-++..++-+....+.|||... +...........+.|.++.| .|+++.++++|..+.|.+|.-.......
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~--~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~- 110 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRS--GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN- 110 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCC--cEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc-
Confidence 334444455555555566899999853 33333332346789999999 5789999999999999998654111000
Q ss_pred cccccccccccccCCCCCceEEEEe--ecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
....|..++. +..+...+|.+..|.++|.+++.++ ..+.|+|-.
T Consensus 111 ---------------~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~ 156 (631)
T PF12234_consen 111 ---------------KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW 156 (631)
T ss_pred ---------------CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence 0113333333 3445556899999999997666543 378888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.61 Score=38.83 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=84.8
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---C---cEEEE-ccCCC---CCccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---G---GICIW-APSYP---GNAAS 181 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g---~i~vw-~~~~~---~~~~~ 181 (445)
+.|..+.....|.+|++.....+....+ ..-+.|..+.++..|+++++.-.+ . .+|+| +++.. ..+..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4444446778899999975445555554 356889999999999999887654 3 56664 22211 11111
Q ss_pred cc-cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecC---
Q 013338 182 VR-SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRG--- 253 (445)
Q Consensus 182 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~--- 253 (445)
+. .++ ........+.. ..+..++-.-...+.+++.-|-.-.|+.|+.+ .+.+|.+..+.. ..+...
T Consensus 107 vRiaG~--~v~~~~~~~~~--~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~~~~~~~~lDFe~~ 180 (215)
T PF14761_consen 107 VRIAGH--RVTPSFNESSK--DQLEIIELPLSEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTIQSEKFSFLDFERS 180 (215)
T ss_pred EEEccc--ccccCCCCccc--cceEEEEecCCCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEEecccccEEechhh
Confidence 10 010 00000000111 11222222223578888888854455566544 899998865432 111111
Q ss_pred ------CCCeeEEEEcCCCCEEEEEecCCeEEEEeC
Q 013338 254 ------FGGLSILKWSPTGDYFFAAKFDGTFYLWET 283 (445)
Q Consensus 254 ------~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~ 283 (445)
.-.+..+++ -+.++|..+ +..++++.+
T Consensus 181 l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 181 LIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred hhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence 112344555 356777666 445666544
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0012 Score=60.43 Aligned_cols=141 Identities=16% Similarity=0.231 Sum_probs=100.6
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
...-...|.|.+..++.++.+..+..||-... .. +.....+....++|..++
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~---------------------------le~n~tg~aldm~wDkeg 86 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VI---------------------------LELNPTGKALDMAWDKEG 86 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcc-ee---------------------------cccCCchhHhhhhhcccc
Confidence 34445678898888888888888888886511 11 111112556678888888
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-CCCCeeEEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTGAT 302 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~ 302 (445)
..++......+.+.+||+++.....+... ...-.-+.|++.+..++.+...+.+.|++..+.......+ |...+++++
T Consensus 87 dvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 87 DVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA 166 (615)
T ss_pred chhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE
Confidence 77766655557999999987655443322 2222227799999999999999999999998877655555 888999999
Q ss_pred ECCCCCeEEEE
Q 013338 303 WDPEGRMILLA 313 (445)
Q Consensus 303 ~sp~~~~l~~~ 313 (445)
+.+.+..+...
T Consensus 167 v~lEd~vil~d 177 (615)
T KOG2247|consen 167 VTLEDYVILCD 177 (615)
T ss_pred ecccceeeecC
Confidence 99988776644
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.87 Score=39.46 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=108.9
Q ss_pred eeEEEEccCC-CEEEEEECCCe-EEEEEccCCCCcceeEEecCCCCCee-EEEECcCCCcEEEEecC-----CcEEEEcc
Q 013338 102 LQGVSWHQHK-HIVAFISGSTQ-VIVRDYEDSEGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCK-----GGICIWAP 173 (445)
Q Consensus 102 v~~~~~sp~g-~~la~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~v~-~l~~spd~~~l~~~~~d-----g~i~vw~~ 173 (445)
-..|+|+|.- .-++.+-.-|+ ..++|.+. .+.+.++......-.+ -=.|||||..|+++-.| |.|-|||.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~--~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG--AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC--CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 4467888864 44556666554 45677643 4333333221111111 12689998777777554 78999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------cCC-----------e
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------S 236 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~g-----------~ 236 (445)
... +..+.++..|- -....+.|.+||+.++.+.. |-| +
T Consensus 148 r~~------------------------fqrvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 148 REG------------------------FQRVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred ccc------------------------cceecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc
Confidence 711 12333455553 56678999999999988742 101 2
Q ss_pred EEEEEccCCCceeee-----cCCCCeeEEEEcCCCCEEEEEecCCeE-----EEEeCCCCCc-cc-------ccCCCCCe
Q 013338 237 FTIWDVAQGLGTPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTF-----YLWETNTWTS-EP-------WSSTSGFV 298 (445)
Q Consensus 237 v~vwd~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~dg~v-----~iwd~~~~~~-~~-------~~~~~~~v 298 (445)
+.+.|..+|+.+... .+.-.+..++..+||..++.+-..|.- -+=-...++. +. .......|
T Consensus 203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYi 282 (366)
T COG3490 203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYI 282 (366)
T ss_pred EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhh
Confidence 344454455442211 234578888888888877665443310 0000111111 11 11334567
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
-+++.+.+..+++.++-..+...+|+.
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEc
Confidence 788888877787766555444444443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.7 Score=43.10 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=58.3
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEE-EccCC-----Cceeeec--------CCCCeeEEEEcCCCCEEEEEec----
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIW-DVAQG-----LGTPIRR--------GFGGLSILKWSPTGDYFFAAKF---- 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vw-d~~~~-----~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~---- 274 (445)
.....+++.++| |+++... .|..| |.... +...+.. +......++|.|||++.++-+.
T Consensus 72 ~~p~Gi~~~~~G--lyV~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 72 SMVTGLAVAVGG--VYVATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred CCccceeEecCC--EEEeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 356789999988 4444433 45544 44321 2222211 1244778999999987665441
Q ss_pred ---------------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEE
Q 013338 275 ---------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 275 ---------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.+.|.-+|.++++.+.+...-.....++|+++|+++++-
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 145777777776654443333345689999999887653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.2 Score=41.54 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred EEECCCCCeEEEEEecC-----------------CeEEEEEccCCCceeeecCC-C------CeeEEEEc----CCCC--
Q 013338 218 LSWGPDGRYLASASYES-----------------SSFTIWDVAQGLGTPIRRGF-G------GLSILKWS----PTGD-- 267 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~-----------------g~v~vwd~~~~~~~~~~~~~-~------~v~~~~~s----p~g~-- 267 (445)
.++.+.+..++.++.+. +.|.-+|.++++..-..... . ......+. -+|.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 45555556666665441 26888899988875443211 1 10111111 1343
Q ss_pred -EEEEEecCCeEEEEeCCCCCcc
Q 013338 268 -YFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 268 -~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
.+++++.+|.++.+|.++++..
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEe
Confidence 5778888999999999999873
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=3 Score=42.45 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=64.7
Q ss_pred CeeEEEECcCCCcEEEEecC-----CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 146 DVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+..+.|+||++.++.+... ..+++.|+.++...... +.+ .. ..++|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------------------i~~---~~-~~~~w 179 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------------------LDN---VE-PSFVW 179 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------------------ccC---cc-eEEEE
Confidence 46678999998766665432 35667777633211110 111 11 45899
Q ss_pred CCCCCeEEEEEecC-----CeEEEEEccCC--CceeeecC-CCCee-EEEEcCCCCEEEEEec---CCeEEEEeCC
Q 013338 221 GPDGRYLASASYES-----SSFTIWDVAQG--LGTPIRRG-FGGLS-ILKWSPTGDYFFAAKF---DGTFYLWETN 284 (445)
Q Consensus 221 sp~~~~l~~~~~d~-----g~v~vwd~~~~--~~~~~~~~-~~~v~-~~~~sp~g~~l~~~~~---dg~v~iwd~~ 284 (445)
++|++.|+....+. -.|+.+++.++ +...+... ..... .+..+.++++++..+. ++.+.+++..
T Consensus 180 ~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 180 ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 99999888776542 26778888877 33334432 22233 2333448887765443 4578888853
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1 Score=46.25 Aligned_cols=66 Identities=15% Similarity=0.337 Sum_probs=50.0
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCC---CeeEEEEcCCCCEEEEEecCCeE
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFG---GLSILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~---~v~~~~~sp~g~~l~~~~~dg~v 278 (445)
.++|++++|+.+|+.++.|-.+ |.|.+||...++..+. ..+.. .|..+.+..++..++++...|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~-G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGD-GHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred CCcceeeEecCCCceeccccCC-CcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 4799999999999999998888 8999999998777543 33433 34445555566678888777763
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.25 Score=50.68 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred CceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
.-..++.|+|.-.. .+.+..| +.|++..+...... .........++++|+|.|++++.|-..|++.-|...-.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~d-lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSD-LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccc-cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence 45668889885332 3444556 68888877643322 223456788999999999999999999999999765442222
Q ss_pred cc----CCCCCeeEEEECCCCCeEEEEE
Q 013338 291 WS----STSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 291 ~~----~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
+. .....|.+++|-....++++-.
T Consensus 235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccCCCcCCCcceeEEEEecceeEEEEec
Confidence 11 2256799999988888877543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=2.5 Score=41.88 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=83.1
Q ss_pred CCCeEEEEEecC-----CeEEEEEccCCCceeeecCCCCeeEEEE-cCCCCEEEEEecCC-----eEEEEeCCCCCcccc
Q 013338 223 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGGLSILKW-SPTGDYFFAAKFDG-----TFYLWETNTWTSEPW 291 (445)
Q Consensus 223 ~~~~l~~~~~d~-----g~v~vwd~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~~~~~dg-----~v~iwd~~~~~~~~~ 291 (445)
++...++|+.+. .++..||...++......-...-..... .-+|...++|+.|| +|..||..+.+....
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 457778888772 2688999988876553332211111111 12688888999887 588899988776444
Q ss_pred cCCCCCeeEEEEC-CCCCeEEEEEc-CCc-eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEE
Q 013338 292 SSTSGFVTGATWD-PEGRMILLAFA-GSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS 368 (445)
Q Consensus 292 ~~~~~~v~~~~~s-p~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 368 (445)
............. -+|+..++|+. ... ....+..++.... .+..+..+.....-..++. -+++..+.|
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--------~W~~~~~M~~~R~~~g~a~-~~~~iYvvG 482 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--------TWTLIAPMNTRRSGFGVAV-LNGKIYVVG 482 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--------ceeecCCcccccccceEEE-ECCEEEEEC
Confidence 3332222222222 24555444432 222 2344444443211 2222333322221112222 367777777
Q ss_pred EcCCCcccceEEEEEEccCCCee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.++.. ...+|..||..+.+..
T Consensus 483 G~~~~~-~~~~VE~ydp~~~~W~ 504 (571)
T KOG4441|consen 483 GFDGTS-ALSSVERYDPETNQWT 504 (571)
T ss_pred CccCCC-ccceEEEEcCCCCcee
Confidence 766421 1245888998876654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.5 Score=37.42 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=64.9
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW 303 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~ 303 (445)
.+++.|+.. |.+.-.|..+|..........++.+-+.- -|++++.|...|.+++.+..++.. ..+.....--.....
T Consensus 24 T~v~igSHs-~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHS-GIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCC-ceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 455556655 78999999999876655555555554433 578899999999999999999965 333322222234456
Q ss_pred CCCCCeEEEEEcCCceEEEEEe
Q 013338 304 DPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 304 sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.+++..+..+ +.+...+.++.
T Consensus 102 d~~~glIycg-shd~~~yalD~ 122 (354)
T KOG4649|consen 102 DFDGGLIYCG-SHDGNFYALDP 122 (354)
T ss_pred cCCCceEEEe-cCCCcEEEecc
Confidence 7788887755 44455555554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.076 Score=53.82 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=68.0
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCee
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT 299 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~ 299 (445)
.+..++.|+.. |.+-..|....-.. +-....++|++++|+.+|+.++.|-.+|.|.+||+..++. +.+..+..+.+
T Consensus 98 ~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 44567777766 79999888765221 1122368999999999999999999999999999999877 44444444443
Q ss_pred E---EEECCCCCeEEEEEcCCceEEEEEe
Q 013338 300 G---ATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 300 ~---~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
. +.+..++..++ +.+..+..+...+
T Consensus 177 ~vi~v~~t~~nS~ll-t~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLL-TSDTGGSFWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEE-EccCCCceEEEEe
Confidence 3 34444555444 4454455555444
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.68 Score=43.60 Aligned_cols=134 Identities=11% Similarity=0.135 Sum_probs=81.9
Q ss_pred EEccCCCCcceeEEecCCCCCeeEEEECcCCC-------cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCC
Q 013338 126 RDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-------RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 126 w~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
+.++-..|+.+..... +.. |+-+.+.|+.+ .-+.+-+++.|.-||.+..+....
T Consensus 359 ~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl----------------- 419 (644)
T KOG2395|consen 359 YKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL----------------- 419 (644)
T ss_pred eeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee-----------------
Confidence 3333345665554432 333 77777777642 234556678899999873332100
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCCe
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGT 277 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~ 277 (445)
.|..-+.+.. .....|.+-.-+| +|++||.+ |.|++||--.... ..+.+...+|..+..+.+|++|+..+ +..
T Consensus 420 -~~~q~kqy~~--k~nFsc~aTT~sG-~IvvgS~~-GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~ty 493 (644)
T KOG2395|consen 420 -AVVQSKQYST--KNNFSCFATTESG-YIVVGSLK-GDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTY 493 (644)
T ss_pred -eeeecccccc--ccccceeeecCCc-eEEEeecC-CcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccE
Confidence 0111111222 2345666665555 78999999 8999999733322 33455678999999999999988665 667
Q ss_pred EEEEeCC
Q 013338 278 FYLWETN 284 (445)
Q Consensus 278 v~iwd~~ 284 (445)
+.+.++.
T Consensus 494 LlLi~t~ 500 (644)
T KOG2395|consen 494 LLLIDTL 500 (644)
T ss_pred EEEEEEe
Confidence 7777764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.33 E-value=2 Score=38.47 Aligned_cols=142 Identities=15% Similarity=0.236 Sum_probs=72.3
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEe-CCCCCc--
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTS-- 288 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd-~~~~~~-- 288 (445)
+.+..+.-++||+++++++.- ....-||.-......... ....|..|.|.|++...+.+ ..|.|+.=+ ....+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G-~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRG-NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTS-SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcc-cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 678889999999988887654 255667754433444333 46889999999998766654 788888877 222211
Q ss_pred ---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-CCccceEEeCCCCCE
Q 013338 289 ---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGER 364 (445)
Q Consensus 289 ---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~ 364 (445)
..+....-.+..++|.+++...++++++ ..+.-.+... +.+....... ...++.+.|.++.+-
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G----~l~~S~DgGk---------tW~~~~~~~~~~~n~~~i~f~~~~~g 289 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG----TLLVSTDGGK---------TWQKDRVGENVPSNLYRIVFVNPDKG 289 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT-----EEEESSTTS---------S-EE-GGGTTSSS---EEEEEETTEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCc----cEEEeCCCCc---------cceECccccCCCCceEEEEEcCCCce
Confidence 1122233347899999998888876443 1222111110 1111111111 125888998877676
Q ss_pred EEEEE
Q 013338 365 LAVSY 369 (445)
Q Consensus 365 l~~~s 369 (445)
++.|.
T Consensus 290 f~lG~ 294 (302)
T PF14870_consen 290 FVLGQ 294 (302)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 76653
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.1 Score=40.67 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=35.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE---E-ecCCCCCeeEEEECcC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI---L-TSDSQRDVKVLEWRPN 155 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~---~-~~~~~~~v~~l~~spd 155 (445)
-+.|+|.|||++|++--..|.|++++-.......... + .....+....|+++|+
T Consensus 32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 5789999999988865556999888753222111111 1 1113567899999987
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.4 Score=38.15 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=101.3
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCe--eEEEEcCCCCEEEEEecCCeE
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFDGTF 278 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~dg~v 278 (445)
+++.+.-....-...+.|..+|.++-+.+.- | .|+.+|+.+++........... -.++.. +++.....-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 4444433333445678887788887777765 4 7999999999876544433332 233333 34455566778999
Q ss_pred EEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---CCC---c
Q 013338 279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---GSQ---G 352 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~ 352 (445)
.+||..+.+........+.-+.++ .+++.|+.+ +++..+..++-. +.+..+.+. ... .
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~-------------~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPE-------------TFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TT-------------T-SEEEEEE-EETTEE---
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEE-CCccceEEECCc-------------ccceEEEEEEEECCEECCC
Confidence 999999877633223334556666 466666644 444444444421 111111111 111 3
Q ss_pred cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC----------CCCCCCceeEeecCC
Q 013338 353 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG----------PGDNPKPVAFSFHDK 416 (445)
Q Consensus 353 v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~----------~~~~v~~v~~spdg~ 416 (445)
++-+.|- +|...|=.-.. ..|...|..+|+....--+..+.. .....+.+||.|..+
T Consensus 177 LNELE~i-~G~IyANVW~t------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQT------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp EEEEEEE-TTEEEEEETTS------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred cEeEEEE-cCEEEEEeCCC------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 5666664 66666554443 578888888888765332222211 123468888887644
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.8 Score=37.57 Aligned_cols=188 Identities=12% Similarity=0.104 Sum_probs=107.1
Q ss_pred eeEEEEccCCCEEEEEECCC--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
...+.|..+|.++-+.+.-| .|+.+++ .+++..........----.++...| +++--. .++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~--~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~t--- 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDL--ETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNT--- 119 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEET--TTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTT---
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEEC--CCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEcccc---
Confidence 45778878888888887666 5666666 4566554443333323334555544 444444 568889999872
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---eecC--
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRG-- 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~-- 253 (445)
+..+..+.-. ..=+.++ .|++.|+.+...+ .+.++|..+.+... +...
T Consensus 120 ----------------------l~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~-~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 120 ----------------------LKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSS-RLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp ----------------------TEEEEEEE-S--SS--EEE--ECSSCEEEE-SSS-EEEEE-TTT-SEEEEEE-EETTE
T ss_pred ----------------------ceEEEEEecC--CcceEEE--cCCCEEEEECCcc-ceEEECCcccceEEEEEEEECCE
Confidence 1233333322 2335555 4666776665553 89999987765532 2222
Q ss_pred -CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc----------------CCCCCeeEEEECCCCCeEEEEEcC
Q 013338 254 -FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------------STSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 254 -~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
-..++.+.|. +|...|=.-....|...|..+|++.... ....-.+.++|.|....+++.+-.
T Consensus 173 pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 173 PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 2456778886 7777777777788999999998863211 113457999999988877766443
Q ss_pred CceEEEEE
Q 013338 317 SLTLGSIH 324 (445)
Q Consensus 317 ~~~~~~~~ 324 (445)
=...+.++
T Consensus 252 Wp~lyeV~ 259 (264)
T PF05096_consen 252 WPKLYEVK 259 (264)
T ss_dssp -SEEEEEE
T ss_pred CCceEEEE
Confidence 23344444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.4 Score=37.00 Aligned_cols=204 Identities=11% Similarity=0.070 Sum_probs=96.0
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCC---CEEEEEecCCeEEEEeCCCCCc---cc---
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS---EP--- 290 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~---~~--- 290 (445)
|.-..+.|+...-..|.|.-||..+.+.....-....+.++.+--.+ .+.+.++..-.|--||...... .+
T Consensus 22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e 101 (310)
T KOG4499|consen 22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE 101 (310)
T ss_pred eEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence 43334445555544478888999877654433322224444443222 2233333333455566332221 11
Q ss_pred cc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 291 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
+. ......+.-..+|+|++.+........ .+..+... ...+. ....+..+...- --+.++|+.+.+.+..
T Consensus 102 v~~d~kknR~NDgkvdP~Gryy~GtMad~~~--~le~~~g~----Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~ 174 (310)
T KOG4499|consen 102 VQPDRKKNRLNDGKVDPDGRYYGGTMADFGD--DLEPIGGE----LYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYY 174 (310)
T ss_pred cCchHHhcccccCccCCCCceeeeeeccccc--cccccccE----EEEec-cCCCceeeehhccCCccccccccCcEEEE
Confidence 11 124566777889999996644332221 11111110 00000 111111121211 2478899988887776
Q ss_pred EEcCCCcccceEEEEEE--ccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC--CCCCeEEEEecCeeeEeeeee
Q 013338 368 SYKGGDDIYKGLIAIYD--ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF--KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~--~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..+- + -.|.-|| ..+|.+.....+-.++.. .+- =..-|||.. ..|.+...+|+.|+|.-++..
T Consensus 175 iDsl--n---~~V~a~dyd~~tG~~snr~~i~dlrk~-~~~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 175 IDSL--N---YEVDAYDYDCPTGDLSNRKVIFDLRKS-QPF--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred EccC--c---eEEeeeecCCCcccccCcceeEEeccC-CCc--CCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 5322 1 6787788 455544322222222210 000 011244433 245677778999998876543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.53 Score=46.33 Aligned_cols=112 Identities=19% Similarity=0.307 Sum_probs=73.4
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEEEEc--CCCCEEEEEecC
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWS--PTGDYFFAAKFD 275 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~~~s--p~g~~l~~~~~d 275 (445)
.|....++...- ....-+.-|.-++ ++....++..+.|||.+.+...... ...+.|.++.|. |+|+.+++.+-.
T Consensus 18 ~w~~t~~~~T~i-~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~ 95 (631)
T PF12234_consen 18 EWLLTSTFETGI-SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP 95 (631)
T ss_pred EEEEEEEEecCC-CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC
Confidence 355555555443 4555666666444 4444444458999999988654333 347889999986 689999988899
Q ss_pred CeEEEEeCCC-----CCc-----c--cccCC-CCCeeEEEECCCCCeEEEE
Q 013338 276 GTFYLWETNT-----WTS-----E--PWSST-SGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 276 g~v~iwd~~~-----~~~-----~--~~~~~-~~~v~~~~~sp~~~~l~~~ 313 (445)
+.|.+|--.. ... + .+..+ ..+|.+..|.++|..++.+
T Consensus 96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence 9999985421 111 1 11222 3578899999999888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.6 Score=38.74 Aligned_cols=153 Identities=12% Similarity=0.118 Sum_probs=83.0
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+.++.+.|++.+++++ ..|.+.. ..+ ..++............++++.+.+++ .++.++..|.+.+=..+...
T Consensus 174 ~~~~i~~~~~g~~v~~g-~~G~i~~-s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg~~G~~~~~s~d~G~--- 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVS-SRGNFYS-TWE-PGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLARGGQIRFNDPDDLE--- 246 (334)
T ss_pred eEEEEEECCCCeEEEEe-CCceEEE-EcC-CCCCeEEEeeCCCcccceeeeEcCCC-CEEEEecCCEEEEccCCCCC---
Confidence 57889999998877655 4454432 111 12222222333456688999999985 55666667766432222111
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee---cCCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR---RGFGG 256 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~---~~~~~ 256 (445)
.|.....-.......+.++.+.++++.+++ +.+ |.+. .....++. .... .....
T Consensus 247 -------------------sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~-G~v~-~S~d~G~tW~~~~~~~~~~~~ 304 (334)
T PRK13684 247 -------------------SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGN-GTLL-VSKDGGKTWEKDPVGEEVPSN 304 (334)
T ss_pred -------------------ccccccCCccccccceeeEEEcCCCCEEEE-cCC-CeEE-EeCCCCCCCeECCcCCCCCcc
Confidence 122111000001135788899998775554 455 5554 34444433 2222 12245
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeC
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWET 283 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~ 283 (445)
.+.+.|..+++.++ .+..|.|-.|+-
T Consensus 305 ~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 305 FYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred eEEEEEeCCCceEE-ECCCceEEEecC
Confidence 77788876666555 555788776653
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.034 Score=46.13 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=59.2
Q ss_pred CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE-EEECCCCCeEEEEEecCC
Q 013338 157 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESS 235 (445)
Q Consensus 157 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~g 235 (445)
..++.++.+|.|.+|+....+........ . ...+.+ +.--.++.+.++++.+ |
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------------------------~-~e~i~~~Ip~~~~~~~~c~~~~d-g 124 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCS------------------------G-EESIDLGIPNGRDSSLGCVGAQD-G 124 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhc------------------------c-cccceeccccccccceeEEeccC-C
Confidence 56888889999999998733332221111 0 122222 2223355677788888 7
Q ss_pred eEEEEEccCCCceeeecCC--CCeeEEEEcCCCCEEEEE--ecCCeEEEEeCCC
Q 013338 236 SFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAA--KFDGTFYLWETNT 285 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~--~~dg~v~iwd~~~ 285 (445)
.|+.|++.-++..-...+. ..+.....+..+++++.+ +.|..++.|++..
T Consensus 125 ~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 125 RIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999999877665554432 233344444444555554 5555555665544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.7 Score=43.08 Aligned_cols=153 Identities=7% Similarity=-0.024 Sum_probs=75.9
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC---CeeEEEEcCCCCEEEEEecC--------------------
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFD-------------------- 275 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~~~d-------------------- 275 (445)
+|+..+.||.++ ..+..||..+++......-.. ....++. +|+..+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 677777787652 148889998876654333211 1112222 67777777754
Q ss_pred ---CeEEEEeCCCCCcccccCCC-CCe-eEEEECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCcccccccccc
Q 013338 276 ---GTFYLWETNTWTSEPWSSTS-GFV-TGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT 348 (445)
Q Consensus 276 ---g~v~iwd~~~~~~~~~~~~~-~~v-~~~~~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (445)
..+..||..+.+...+.... ... .+++ .-+++..++|+..+. ....+..++.... ..+..+..+.
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-------~~W~~~~~m~ 500 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-------NGWELITTTE 500 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCC-------CCeeEccccC
Confidence 25788998887653332111 111 1122 224555554532211 1122333332110 0122233333
Q ss_pred CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 349 GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 349 ~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
... ....+++ +|+..++|+.++. ..+..||..+.+..
T Consensus 501 ~~r~~~~~~~~--~~~iyv~Gg~~~~----~~~e~yd~~~~~W~ 538 (557)
T PHA02713 501 SRLSALHTILH--DNTIMMLHCYESY----MLQDTFNVYTYEWN 538 (557)
T ss_pred cccccceeEEE--CCEEEEEeeecce----eehhhcCccccccc
Confidence 322 2233333 7788888876631 37888888876543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.092 Score=43.67 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeE-EEECcCCCcEEEEecCCcEEEEccC
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
+..+++|+.+|.|.+|++.. .+........+ ...|-+ +.--.++....+++.+|.|+.|++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~-~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNL-EGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred CceEEeecccceEEEecCCc-cchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccc
Confidence 35678899999999999862 23222222111 222222 2222333345566678999999987
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.44 Score=49.02 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=87.4
Q ss_pred ecccCCCceeEEEECCCCCeEEEEEecCC-eEEEEEccCCCc------eeeec------CCCCeeEEEEcCCC-CEEEEE
Q 013338 207 LRSQNGEQITALSWGPDGRYLASASYESS-SFTIWDVAQGLG------TPIRR------GFGGLSILKWSPTG-DYFFAA 272 (445)
Q Consensus 207 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~g-~v~vwd~~~~~~------~~~~~------~~~~v~~~~~sp~g-~~l~~~ 272 (445)
++-|....+..+..++|+...++....+| .|..||++.-.. ..+.. ......++.|+|.- ...+++
T Consensus 95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh
Confidence 34444456777778888777665544322 788999875322 11111 12456788899863 335667
Q ss_pred ecCCeEEEEeCCCCCcccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 273 KFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
..|+.|++.-+........ .......++++|+|.|+.++++... +++-.+... ...+.. ....+... ..
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn-Gt~vQy~P~-----leik~~-ip~Pp~~e---~y 244 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN-GTEVQYEPS-----LEIKSE-IPEPPVEE---NY 244 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC-CeEEEeecc-----cceeec-ccCCCcCC---Cc
Confidence 7788888886654333211 2455678999999999999987543 333332210 000000 01111111 12
Q ss_pred ccceEEeCCCCCEEEEE
Q 013338 352 GIEKIAWDASGERLAVS 368 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~ 368 (445)
.|.+|+|-..-.+|++-
T Consensus 245 rvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 245 RVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ceeEEEEecceeEEEEe
Confidence 68999998777777653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.18 Score=29.80 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCC---CEEEEEecCCeEEEEeCCC
Q 013338 255 GGLSILKWSPTG---DYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 255 ~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~ 285 (445)
+.+.+++|+|.. .+|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.9 Score=40.07 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=71.5
Q ss_pred CCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-----eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC--
Q 013338 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-- 284 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~-- 284 (445)
.++|.++.||+|.+.||+--.++ +|.+++....+... .......|....|+.+ .-+|..+..| +.+|-..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~-~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSK-TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEeccCcceEEEEecCc-eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 37999999999999999998884 99999885443322 1223456889999865 5566665444 5555444
Q ss_pred CCCcccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 285 TWTSEPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 285 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
....+....++..|+-..|.++.+.++.+..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 3344566678888888899999887776544
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.14 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCeeEEEECcCCC--cEEEEecC-CcEEEEccC
Q 013338 145 RDVKVLEWRPNGG--RSLSVGCK-GGICIWAPS 174 (445)
Q Consensus 145 ~~v~~l~~spd~~--~l~~~~~d-g~i~vw~~~ 174 (445)
+.|+++.|+|+.. .|++-+.+ +.|.|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999998755 57777766 999999998
|
It contains a characteristic DLL sequence motif. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.25 E-value=6.4 Score=39.16 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=38.2
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
-.|+|++. .|..+..+...|. .+-.+.|+.+ ..|+....+|++.+|++.
T Consensus 64 ~~I~If~~---sG~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNI---SGQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEec---cccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecc
Confidence 34777775 4766666554455 6778999998 889999999999999986
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=5.5 Score=37.16 Aligned_cols=159 Identities=8% Similarity=0.078 Sum_probs=91.0
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
.+-|.-..+.| .+...|.+.=|............+.....++|.++.||+|.+.+++--.+..|.+++......... .
T Consensus 27 gvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~-~ 104 (657)
T KOG2377|consen 27 GVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE-Y 104 (657)
T ss_pred ceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-H
Confidence 33444333333 344555566676654433333344334567999999999944444445679999998752211111 0
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC--CceeeecCCCCeeEEE
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILK 261 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~--~~~~~~~~~~~v~~~~ 261 (445)
. .+-+.. ...|....|+.+ .-+|..... -+.+|..... ....+..+...|+-..
T Consensus 105 ~--------------------~~ck~k-~~~IlGF~W~~s-~e~A~i~~~--G~e~y~v~pekrslRlVks~~~nvnWy~ 160 (657)
T KOG2377|consen 105 T--------------------QECKTK-NANILGFCWTSS-TEIAFITDQ--GIEFYQVLPEKRSLRLVKSHNLNVNWYM 160 (657)
T ss_pred H--------------------HHhccC-cceeEEEEEecC-eeEEEEecC--CeEEEEEchhhhhhhhhhhcccCccEEE
Confidence 0 001111 246889999866 567766655 4666665433 3344556778899999
Q ss_pred EcCCCCEEEEEe--cCCeEEEEeCCCCCc
Q 013338 262 WSPTGDYFFAAK--FDGTFYLWETNTWTS 288 (445)
Q Consensus 262 ~sp~g~~l~~~~--~dg~v~iwd~~~~~~ 288 (445)
|.++.+.++.++ ..+++.=+-++++..
T Consensus 161 yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 161 YCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred EccccceEeeeccccccccccEEEeecee
Confidence 999887654443 344444455555444
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.91 E-value=8.4 Score=39.27 Aligned_cols=73 Identities=15% Similarity=0.278 Sum_probs=52.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC----------CCc----eee------e--cCCCCeeEEEEcCC---CC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----------GLG----TPI------R--RGFGGLSILKWSPT---GD 267 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----------~~~----~~~------~--~~~~~v~~~~~sp~---g~ 267 (445)
-.|..+.+||+|++++..|.. | |.|..+.. ++. ... + .....|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~-~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPR-G-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCC-c-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 578999999999999999876 3 44444421 111 111 0 12357889999996 57
Q ss_pred EEEEEecCCeEEEEeCCCCC
Q 013338 268 YFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~ 287 (445)
.|++-+.|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.29 Score=39.98 Aligned_cols=34 Identities=24% Similarity=0.032 Sum_probs=27.8
Q ss_pred CCCceeEeecCCC-CCCCeEEEEecCeeeEeeeee
Q 013338 405 NPKPVAFSFHDKF-KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 405 ~v~~v~~spdg~~-~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.+++|||-|-- ..+++|++..++|+|.+|.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 5778999998754 357899999999999988643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.41 E-value=4.1 Score=34.09 Aligned_cols=125 Identities=13% Similarity=0.063 Sum_probs=68.0
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCc-----eEEEEEeccC
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASK 328 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~-----~~~~~~~~~~ 328 (445)
....++-++. ..|+.+.....|.+|++.+.....+ ...-+.|..+.++..|++|++--.... ..+.+--|..
T Consensus 19 EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 19 EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 3444444432 4454445677899999995544322 234478899999999999997543322 2244444543
Q ss_pred CC----Ccccccc--Ccc-------c--cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 329 PP----SLDAHLL--PVD-------L--PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 329 ~~----~~~~~~~--~~~-------~--~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
.. .....+. ... . -.+-++.-...+.+++..|-..-|+.|+. +++.+|.+...
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-------~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-------NKLVLFTLKYQ 165 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-------CEEEEEEEEEE
Confidence 21 1110000 000 0 01112223236788888885444555554 68999998753
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.75 Score=42.50 Aligned_cols=164 Identities=12% Similarity=0.137 Sum_probs=91.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC---CCee-EEEECcCCCcEEEEecCCcEEEE-ccCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ---RDVK-VLEWRPNGGRSLSVGCKGGICIW-APSY 175 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~l~~spd~~~l~~~~~dg~i~vw-~~~~ 175 (445)
+|..+-..|||++|..-+. .++.|+++....-+..+....... ..|+ .+..-..|..++++..||.|.-| |+..
T Consensus 222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~ 300 (733)
T COG4590 222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR 300 (733)
T ss_pred chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence 5778889999999987655 778888886533222221111111 1122 22222344567888888888766 5543
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
.+.+.. ..++.++-. ...+..+.-..+.+-+++-... |++.++.....+..-....-.
T Consensus 301 ~~~p~l--------------------~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~-G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 301 DGQPHL--------------------NHIRNFKLA-PAEVQFLLPETNRKGFYSLYRN-GTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred CCCCcc--------------------eeeeccccC-cccceeeccccccceEEEEcCC-CceeeeecccCcceehhhhhc
Confidence 322211 112222211 1233333222233345555555 788877655544443333345
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+..+++||++.++++-. .|.++++.+++...
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 359 APQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred CcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 677899999999988654 56799998877543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.17 E-value=2.4 Score=43.08 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=54.8
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCC--CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
-.|..+.++|+|++|+..+..| |.|..+.. +....+......+.|-.+.-+..++. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~------------------- 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-S------------------- 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc-C-------------------
Confidence 3688899999999999888765 44554432 11122222333343333322222211 1
Q ss_pred cccccCccccccccccCCC-ccceEEeCCC---CCEEEEEEcCCCcccceEEEEEEccC
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+. .|..+.|+|. +..|+.-..| +++|+||+..
T Consensus 144 ----------------~~~~~i~qv~WhP~s~~~~~l~vLtsd------n~lR~y~~~~ 180 (717)
T PF10168_consen 144 ----------------NSSLEIKQVRWHPWSESDSHLVVLTSD------NTLRLYDISD 180 (717)
T ss_pred ----------------CCCceEEEEEEcCCCCCCCeEEEEecC------CEEEEEecCC
Confidence 111 5788999986 4788888777 9999999974
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=7.8 Score=36.42 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=81.3
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
...+..++||.+++++..-..++-|+- +... ..........++++.|.+++ .++.++..|.+.. .........
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~----G~~~W~~~~~~~~~~l~~v~~~~dg-~l~l~g~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP----GQPYWQPHNRASARRIQNMGWRADG-GLWLLTRGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC----CCcceEEecCCCccceeeeeEcCCC-CEEEEeCCceEEE-ecCCCCccc
Confidence 445667888888887654433334442 3321 22223456678999999985 5556666666533 322111000
Q ss_pred ccccccccccccccCCCCCceEEEEeecc-cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee---cCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR---RGFG 255 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~---~~~~ 255 (445)
.. .+..+.. .....+.++.|.+++..+++| .. |.+.... ..++. .... .-..
T Consensus 315 -~~-------------------~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~-G~v~~s~-D~G~tW~~~~~~~~~~~ 371 (398)
T PLN00033 315 -DF-------------------DFEEADIKSRGFGILDVGYRSKKEAWAAG-GS-GILLRST-DGGKSWKRDKGADNIAA 371 (398)
T ss_pred -cc-------------------ceeecccCCCCcceEEEEEcCCCcEEEEE-CC-CcEEEeC-CCCcceeEccccCCCCc
Confidence 00 0111111 112458899999887766555 45 5665553 44433 3322 2245
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
..+.+.|.++++-+++| .+|.|.-|
T Consensus 372 ~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 372 NLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 78899998776655554 57776544
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=10 Score=37.53 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=38.6
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCCC--eeEEEEcCCCCEEEEEecC------CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD------GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~~--v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~~~ 290 (445)
+++.++.||.+. ..+..||..+++.......... -.+++ .-+++..+.|+.+ ..+..||..+.+...
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 567777777542 2577889887765443321111 11122 2356666777632 468899998766543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=4.6 Score=40.07 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=30.2
Q ss_pred eEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEecC------CeEEEEeCCC-CCcc
Q 013338 236 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD------GTFYLWETNT-WTSE 289 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~-~~~~ 289 (445)
.+..||..+.+...+..-. ......+..-+++..+.|+.+ ..+..||..+ .+..
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 5778998887664433221 111111122257777777654 2478899988 5543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.64 Score=27.25 Aligned_cols=41 Identities=20% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW 262 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~ 262 (445)
|++++|+++....++|.++|..+++......-......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 67888888776557999999987766444333344445544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.47 E-value=10 Score=36.20 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee------e--cCCCCeeEEEEcCCC------CEEEEEe-----
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI------R--RGFGGLSILKWSPTG------DYFFAAK----- 273 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~------~--~~~~~v~~~~~sp~g------~~l~~~~----- 273 (445)
...+.++|.|||+.|++--.. |.|++++..++....+ . ...+....|+++|+- ++|.+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~-G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERAT-GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEecC-CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 567899999999877665435 7999998655432211 1 135778999999874 2443332
Q ss_pred -----cCCeEEEEeCCCC--Cc---cc-ccC----CCCCeeEEEECCCCCeEEEEEcC
Q 013338 274 -----FDGTFYLWETNTW--TS---EP-WSS----TSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 274 -----~dg~v~iwd~~~~--~~---~~-~~~----~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
....|.-|.+... .. .. +.. ....-..|.|.|||.+.++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 11 11 111 11224578899999876655443
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.44 E-value=6.8 Score=34.06 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=101.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW 291 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~ 291 (445)
..-..++-.|||..-+++... |.|--.|..+|+..... ........|...|||..-++=+.. -|.-.|.++.+..++
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 456778888999877777666 68888888888876554 345667788889998866654433 566677777766443
Q ss_pred c----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEE
Q 013338 292 S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERL 365 (445)
Q Consensus 292 ~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l 365 (445)
. ..........|.+.|++-+++.. +.-+.++- ....++.+.... ..+.++..|||..-
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~--G~yGrLdP--------------a~~~i~vfpaPqG~gpyGi~atpdGsvw 203 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI--GAYGRLDP--------------ARNVISVFPAPQGGGPYGICATPDGSVW 203 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc--ccceecCc--------------ccCceeeeccCCCCCCcceEECCCCcEE
Confidence 3 33456788999999998887632 22232221 222334444333 68899999999987
Q ss_pred EEEEcCCCcccceEEEEEEccCC
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++.-.+ +.|-..|...+
T Consensus 204 yaslag------naiaridp~~~ 220 (353)
T COG4257 204 YASLAG------NAIARIDPFAG 220 (353)
T ss_pred EEeccc------cceEEcccccC
Confidence 775555 56777776554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.99 Score=38.44 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=49.2
Q ss_pred ECCCCCeEEEEEecCCeEEEEEccCCCcee-------ee--------cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC
Q 013338 220 WGPDGRYLASASYESSSFTIWDVAQGLGTP-------IR--------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 220 ~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-------~~--------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
+..++++|++...+ |.+++||+.+++... +. .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~-G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSS-GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCC-CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34467888888888 899999999875421 11 2346788888888888777665 5788999877
Q ss_pred CCCcc
Q 013338 285 TWTSE 289 (445)
Q Consensus 285 ~~~~~ 289 (445)
-+.-.
T Consensus 96 L~~W~ 100 (219)
T PF07569_consen 96 LGCWI 100 (219)
T ss_pred cceeE
Confidence 65443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=4.3 Score=40.12 Aligned_cols=69 Identities=9% Similarity=0.059 Sum_probs=39.6
Q ss_pred CCCeEEEEEecC-------CeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCC
Q 013338 223 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWT 287 (445)
Q Consensus 223 ~~~~l~~~~~d~-------g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~ 287 (445)
+++.++.|+... ..+.+||..+++...+.... .....+.+ +++.++.|+.+ +.|.+||..+.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 566666665431 13889999887665443211 11112222 66777777654 468888888776
Q ss_pred cccccC
Q 013338 288 SEPWSS 293 (445)
Q Consensus 288 ~~~~~~ 293 (445)
...+..
T Consensus 515 W~~~~~ 520 (534)
T PHA03098 515 WTLFCK 520 (534)
T ss_pred EEecCC
Confidence 544433
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.12 E-value=16 Score=37.71 Aligned_cols=239 Identities=11% Similarity=0.029 Sum_probs=117.7
Q ss_pred CeeEEEEcc-C---CCEEEEEE---CCCeEEEEEccCCCCcceeEEecCCCCCeeEEE--ECcCCCcEEEEecCCcEEEE
Q 013338 101 DLQGVSWHQ-H---KHIVAFIS---GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE--WRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 101 ~v~~~~~sp-~---g~~la~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~--~spd~~~l~~~~~dg~i~vw 171 (445)
+|..++.-- + +..+++++ .||+++|..-.-+=. ........-...++.+. +.+.-...+..+.-+.-++.
T Consensus 355 PI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~-e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl 433 (1096)
T KOG1897|consen 355 PIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGID-ELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVL 433 (1096)
T ss_pred ceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccc-eeeEeecCCccceeEeeccccccCCcEEEEEeccceEEE
Confidence 566665542 2 24566655 688999886422111 11111112245677777 54433335555555555666
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
.+... ..... ..+-. .....+..|- .++.|+-...+ .|++++-. +... .
T Consensus 434 ~i~~e--~ee~~-----------------------~~gf~-~~~~Tif~S~i~g~~lvQvTs~--~iRl~ss~-~~~~-~ 483 (1096)
T KOG1897|consen 434 NISEE--VEETE-----------------------DPGFS-TDEQTIFCSTINGNQLVQVTSN--SIRLVSSA-GLRS-E 483 (1096)
T ss_pred EEccc--eEEec-----------------------ccccc-ccCceEEEEccCCceEEEEecc--cEEEEcch-hhhh-c
Confidence 66522 11000 00000 1122222222 34444444433 68888755 2222 2
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCC--CC----eEEEEEcCCceEEE
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPE--GR----MILLAFAGSLTLGS 322 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~--~~----~l~~~~~~~~~~~~ 322 (445)
....+.++..+.+.+...++.++.++.+...++.....+.. ......|.|+.++|- ++ ++++|.-.+.....
T Consensus 484 W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 484 WRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred ccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 22344555555555666788888788888888776654222 244567899999975 32 45555332221111
Q ss_pred EEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
....+. .......+.+.. .|.-..|-.|..+|.++..| |.+.-|-+..
T Consensus 564 ~~~pd~-----------~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd------G~l~~fv~d~ 614 (1096)
T KOG1897|consen 564 TFLPDL-----------ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD------GALLYFVLDI 614 (1096)
T ss_pred EECCCc-----------ceeeeeccCCCccchheeeEEeeccceEEEEEcCC------ceEEEEEEEc
Confidence 111110 001111122222 35555666678899988877 7777665543
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.2 Score=49.97 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=48.1
Q ss_pred eeEEEEcc---CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEE-----------CcCCCcEEEEecCCc
Q 013338 102 LQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-----------RPNGGRSLSVGCKGG 167 (445)
Q Consensus 102 v~~~~~sp---~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~-----------spd~~~l~~~~~dg~ 167 (445)
+.-+.|.| +..++.++-.++.+++.+++... ..+..+|...+..++| ||||..+++...||.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHH----HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 45566665 55667777788999988875322 2333457776666554 788888888888888
Q ss_pred EEEEccCC
Q 013338 168 ICIWAPSY 175 (445)
Q Consensus 168 i~vw~~~~ 175 (445)
++.|.+..
T Consensus 259 v~f~Qiyi 266 (1283)
T KOG1916|consen 259 VGFYQIYI 266 (1283)
T ss_pred cceeeeee
Confidence 88887763
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.032 Score=51.51 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=95.5
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~ 182 (445)
...|-|.+.-++.++.+..+..||-. ++.... ..-.+....++|..++..++.... .+.+.+|++..... +.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a---gq~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA---GQVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh---cceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 45778887778888888888888842 332222 234566778999998887766665 49999999983321 222
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEE
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILK 261 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~ 261 (445)
..+ +. ..-.-+.|++....++.+... |.+.+++..+.+.....+ |...+++++
T Consensus 113 E~g-----------------------g~--~s~sll~wsKg~~el~ig~~~-gn~viynhgtsR~iiv~Gkh~RRgtq~a 166 (615)
T KOG2247|consen 113 ESG-----------------------GT--SSKSLLAWSKGTPELVIGNNA-GNIVIYNHGTSRRIIVMGKHQRRGTQIA 166 (615)
T ss_pred hcc-----------------------Cc--chHHHHhhccCCccccccccc-cceEEEeccchhhhhhhcccccceeEEE
Confidence 111 11 122236888888888888777 799999988877766666 888999999
Q ss_pred EcCCCCEEEEEecCC
Q 013338 262 WSPTGDYFFAAKFDG 276 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg 276 (445)
|.+.+..+ .++.|.
T Consensus 167 v~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 167 VTLEDYVI-LCDCDN 180 (615)
T ss_pred ecccceee-ecCcHH
Confidence 99876543 344343
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.28 Score=49.08 Aligned_cols=139 Identities=17% Similarity=0.214 Sum_probs=77.5
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecC-CcEEEEccCCC-CCccccccccccccccccCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYP-GNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~d-g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~ 196 (445)
.+.+++-+... .-....+.++..+.|-.+.|-. +..++. .+ |.+.||+++.- +++.. .
T Consensus 110 ~~~vrvaN~~~--sm~~~~l~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~---~----------- 170 (1283)
T KOG1916|consen 110 ENGVRVANQEP--SMRHNELAKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQP---Q----------- 170 (1283)
T ss_pred hhhhhhccCcc--hhHHHHHHhcCCCCcccccccccCChHHH---HHhhhhheeehHhhcccccc---c-----------
Confidence 35566666532 1111234457788888898843 223333 33 88899998721 11110 0
Q ss_pred CCCceEEEEeecccCCCceeEEEECC---CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE-----------EE
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL-----------KW 262 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~-----------~~ 262 (445)
..+...... ...+.-+.|.| +.-++.++-.+ |.+++...++.....+..|...+..+ ..
T Consensus 171 -----l~v~~~~p~-gs~~~~V~wcp~~~~~~~ic~~~~~-~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~l 243 (1283)
T KOG1916|consen 171 -----LEVTPITPY-GSDPQLVSWCPIAVNKVYICYGLKG-GEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASL 243 (1283)
T ss_pred -----eEEeecCcC-CCCcceeeecccccccceeeeccCC-CceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheee
Confidence 111222222 23445556655 55555555444 78888777655443333444433332 27
Q ss_pred cCCCCEEEEEecCCeEEEEeCC
Q 013338 263 SPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
+|||+.|+.++.||.++.|.+.
T Consensus 244 SpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 244 SPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCCcEEEEeecCCccceeeee
Confidence 8999999999999988887654
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.98 E-value=6.8 Score=39.53 Aligned_cols=191 Identities=23% Similarity=0.231 Sum_probs=98.9
Q ss_pred ceeEEEECCCCCeEEEEEec------C--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC----eEEEE
Q 013338 214 QITALSWGPDGRYLASASYE------S--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLW 281 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d------~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg----~v~iw 281 (445)
.+....++|.+..++..... . ..+.+.|... .........+..+.|+|+|..++..+.++ .+++.
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~ 90 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLV 90 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEE
Confidence 34445566666655554332 0 1233333222 33445567888899999999998777433 45555
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC--CceEEE-------EEeccCCCC-ccccccCcccc-ccccccCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGS-------IHFASKPPS-LDAHLLPVDLP-DIVSLTGS 350 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--~~~~~~-------~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 350 (445)
+.. + ....+...+....|+|+++.++..... ...... +.+|..... ....++.++.+ ........
T Consensus 91 ~~~-g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~ 166 (620)
T COG1506 91 DVG-G---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLG 166 (620)
T ss_pred ecC-C---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccCC
Confidence 555 3 334455667788999999988862110 001111 112211111 11111111111 11222222
Q ss_pred C-ccceEEeCCCCCEEEEEEcCCC-cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 351 Q-GIEKIAWDASGERLAVSYKGGD-DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 351 ~-~v~~~~~sp~g~~l~~~s~d~~-d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
. .+....++++++.++....+.+ +.+-....++...++.+. .+......+..+.|.++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~gk~ 229 (620)
T COG1506 167 NLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE------SLTPGEGSISKLAFDADGKS 229 (620)
T ss_pred CCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE------EEcCCCceeeeeeeCCCCCe
Confidence 2 6777788888888887766543 222233444444444443 33334445778888888873
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=11 Score=34.75 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=80.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-c
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E 289 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~ 289 (445)
..+.++.+.|++.+++++. . |.+..-.-..++ ..... .....++++.+.++++.++++ ..|.+++=..+.+.. .
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-R-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-C-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 5788999999987666553 4 444432112222 22222 234678999999998876665 467664323444433 2
Q ss_pred cccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 290 PWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 290 ~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
.... ....+..+.+.+++..++++.. +.+ +.-.+.. + +...+.....-. ..+.+.|..+++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G~v--~~S~d~G-----~----tW~~~~~~~~~~~~~~~~~~~~~~~~ 316 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGN--GTL--LVSKDGG-----K----TWEKDPVGEEVPSNFYKIVFLDPEKG 316 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEcCC--CeE--EEeCCCC-----C----CCeECCcCCCCCcceEEEEEeCCCce
Confidence 1111 2235788899998887775532 211 1111110 0 111111101111 4677888777787
Q ss_pred EEEEEcCCCcccceEEEEEE
Q 013338 365 LAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd 384 (445)
+++|.. |.|.-|+
T Consensus 317 ~~~G~~-------G~il~~~ 329 (334)
T PRK13684 317 FVLGQR-------GVLLRYV 329 (334)
T ss_pred EEECCC-------ceEEEec
Confidence 777643 6776665
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.5 Score=37.28 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=39.9
Q ss_pred EcCCCCEEEEEecCCeEEEEeCCCCCccc--------cc-------CCCCCeeEEEECCCCCeEEEEEcC
Q 013338 262 WSPTGDYFFAAKFDGTFYLWETNTWTSEP--------WS-------STSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 262 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--------~~-------~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
+..++++|++.+.+|.+++||+.+++... +. .....|..+.++.+|.-+++-.++
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 34578899999999999999999987621 11 244567788888888777654443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=91.45 E-value=13 Score=35.16 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=93.8
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECc----CCCcEEEEecCCcEEEEccCCCCCccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPSYPGNAASVRSG 185 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~sp----d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 185 (445)
...|++|+..|.++||+......+.. ..+...-..+|..++.-+ .....+++-.-..+.||.+........
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~---- 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE---- 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc----
Confidence 46899999999999999853222211 222234567888887632 234567777778899998852211100
Q ss_pred cccccccccCCCCCceEEEEeecccCCCceeEEEECC----C-CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEE
Q 013338 186 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----D-GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~ 260 (445)
.+..+.+...++-+-......+++-| . ...|++-+.| |.+.+|+-+.-.........--...+
T Consensus 113 -----------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~D-G~L~~feqe~~~f~~~lp~~llPgPl 180 (418)
T PF14727_consen 113 -----------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMD-GSLSFFEQESFAFSRFLPDFLLPGPL 180 (418)
T ss_pred -----------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecC-ceEEEEeCCcEEEEEEcCCCCCCcCe
Confidence 01122222222211112333444332 2 3467777888 89999997654433333333334457
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCC
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~ 284 (445)
.+.+.-..|++++.+..+.-|...
T Consensus 181 ~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 181 CYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEeecCCEEEEecCceeEEEecHH
Confidence 888888899999988888888654
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.30 E-value=1.2 Score=25.69 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=21.6
Q ss_pred CceeEEEECCCCCeEEEEEecC--CeEEEE
Q 013338 213 EQITALSWGPDGRYLASASYES--SSFTIW 240 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~--g~v~vw 240 (445)
..-....|||||+.|+.++... |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4667889999999999998776 566665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=91.01 E-value=12 Score=34.17 Aligned_cols=102 Identities=16% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCceeEEEECCCCCeEEEEEecCCe------EEEEEccC--CC--------ceeeecCCC--------CeeEEEEcCCCC
Q 013338 212 GEQITALSWGPDGRYLASASYESSS------FTIWDVAQ--GL--------GTPIRRGFG--------GLSILKWSPTGD 267 (445)
Q Consensus 212 ~~~v~~~~~sp~~~~l~~~~~d~g~------v~vwd~~~--~~--------~~~~~~~~~--------~v~~~~~sp~g~ 267 (445)
-+.+..+.+.+++..+++.+.+ |. +..+++.. +. ...+....+ ..-++++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDR-GPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECC-CCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3678899999766666666666 56 55555543 11 111222222 334788877888
Q ss_pred EEEEEecC------CeEEEEeCCCCCc-ccc---------------cCCCCCeeEEEECCCCCeEEEEEc
Q 013338 268 YFFAAKFD------GTFYLWETNTWTS-EPW---------------SSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 268 ~l~~~~~d------g~v~iwd~~~~~~-~~~---------------~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
++++.-.+ ..|+.++.. ++. ..+ ...+....+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88877777 789999877 433 111 123456789999999997666543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.75 E-value=23 Score=36.75 Aligned_cols=283 Identities=10% Similarity=0.051 Sum_probs=139.7
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE--ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|--..+-.|..+|.++..||.+.-+.++..++..-... .. -..++.--.|+..++.-+.+.+|.-..+|.-+.+-..
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 44555556678899999999998888876555432111 11 2345665667666565555555644445543311000
Q ss_pred c--------ccccccc-cccccccCCCCCceE--E--------EEeecccCCCceeEEEECCCCCeEEEEEec-------
Q 013338 180 A--------SVRSGAA-SFLGALSRGPGTRWT--L--------VDFLRSQNGEQITALSWGPDGRYLASASYE------- 233 (445)
Q Consensus 180 ~--------~~~~~~~-~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------- 233 (445)
. .+.+... +....+.....+... . .+++.-+ .....+++.+....+.+.+..
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~--~~prrI~~q~~sl~~~v~s~r~e~~~~~ 742 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLG--ESPRRICYQESSLTFGVLSNRIESSAEY 742 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCC--CChhheEecccceEEEEEecccccchhh
Confidence 0 0000000 000011111111111 1 1222222 456677777644444433211
Q ss_pred ----C--CeEEEEEccCCCceeeecCC-----CCeeEEEEcCC-CCEEEEEec----------CCeEEEEeCCC-CCccc
Q 013338 234 ----S--SSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPT-GDYFFAAKF----------DGTFYLWETNT-WTSEP 290 (445)
Q Consensus 234 ----~--g~v~vwd~~~~~~~~~~~~~-----~~v~~~~~sp~-g~~l~~~~~----------dg~v~iwd~~~-~~~~~ 290 (445)
. -.++++|-++-+........ -.+.++.|..| +.++++|+. .|.|.+|.... ++++.
T Consensus 743 ~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~ 822 (1096)
T KOG1897|consen 743 YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL 822 (1096)
T ss_pred cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee
Confidence 0 13566776655444333221 24556668877 777887753 47888888877 33332
Q ss_pred cc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 291 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
.. .-.+.+.++.. -+|+++| +-+.. +..++.. ..+.++.-..+. ++..+...-.|..+++
T Consensus 823 v~e~~v~Gav~aL~~-fngkllA-~In~~--vrLye~t-------------~~~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKGAVYALVE-FNGKLLA-GINQS--VRLYEWT-------------TERELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeeccceeehhh-hCCeEEE-ecCcE--EEEEEcc-------------ccceehhhhcccCCeEEEEEEecCcEEEE
Confidence 22 22344444432 2577776 43322 3333321 222333333444 6788888888889998
Q ss_pred EEcCCCcccceEEEEEEccC--CCeeeeeeeeeee-CCCCCCCceeEeecC
Q 013338 368 SYKGGDDIYKGLIAIYDARR--TPLISLSLIGFIR-GPGDNPKPVAFSFHD 415 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~--~~~~~~~~~~~~~-~~~~~v~~v~~spdg 415 (445)
|-.- +++.+-..+. |.... ..+ -+..+.+++.+-.+.
T Consensus 886 gDlm------~Sitll~y~~~eg~f~e-----vArD~~p~Wmtaveil~~d 925 (1096)
T KOG1897|consen 886 GDLM------RSITLLQYKGDEGNFEE-----VARDYNPNWMTAVEILDDD 925 (1096)
T ss_pred eecc------ceEEEEEEeccCCceEE-----eehhhCccceeeEEEecCc
Confidence 8654 5555544443 33331 111 244556666654443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.51 E-value=20 Score=35.87 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=38.9
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.|+||+........+...++.+..+.|+.+. .|++...+|++++|++.....
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhh
Confidence 6889988766555555555688899999554 566677899999999876544
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.50 E-value=6.5 Score=30.13 Aligned_cols=62 Identities=8% Similarity=-0.008 Sum_probs=39.2
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCC
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWT 287 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~ 287 (445)
...|+.|+.. .+..||+......-.+.-...|+++.+-. ...-++..+.+-.|.-||....+
T Consensus 64 ~D~LliGt~t--~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 64 RDCLLIGTQT--SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCEEEEeccc--eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 4456666654 79999999887666666667888877642 12234444445566666665543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.7 Score=40.84 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=49.5
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEE---EEccC----CCeeeeeeeeeeeCC-CCCCCceeEeecCCC------CCC
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAI---YDARR----TPLISLSLIGFIRGP-GDNPKPVAFSFHDKF------KQG 420 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~v---wd~~~----~~~~~~~~~~~~~~~-~~~v~~v~~spdg~~------~~~ 420 (445)
.++.+|++.+||.+..+ ..+.+ |+... ...........+... ++.|+++.|-|=... ...
T Consensus 6 ~isls~~~d~laiA~~~------r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw 79 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQ------RLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDW 79 (415)
T ss_pred eEEecCCCCEEEEEcCC------EEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCc
Confidence 56789999999998665 44443 64421 122333333344332 267888888775322 235
Q ss_pred CeEEEEecCeeeEeeee
Q 013338 421 PLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 421 ~~l~~~~~~G~v~~~~~ 437 (445)
.+++||+++|.|.||.-
T Consensus 80 ~~I~VG~ssG~vrfyte 96 (415)
T PF14655_consen 80 TCIAVGTSSGYVRFYTE 96 (415)
T ss_pred EEEEEEecccEEEEEec
Confidence 78999999999999975
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.35 E-value=8 Score=33.42 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=76.1
Q ss_pred eEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEEEEec-C--CeEEEEeCCC--CCcc--cc---cCCCCCeeEEEEC
Q 013338 236 SFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKF-D--GTFYLWETNT--WTSE--PW---SSTSGFVTGATWD 304 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~-d--g~v~iwd~~~--~~~~--~~---~~~~~~v~~~~~s 304 (445)
.-.+||+.+++...+... ..-..+-++-+||+.|.+|+. + ..+++++... ..+. .. .....+--++.--
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 356889988877655432 222333457789999998875 2 3688888654 1111 10 1222233345566
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC--C-ccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
+||+.|++++.. ...+.++....... ... ....+...... . .=-.+...|||+.++.+..+ -.
T Consensus 127 ~DG~vlIvGG~~---~~t~E~~P~~~~~~-~~~--~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--------s~ 192 (243)
T PF07250_consen 127 PDGRVLIVGGSN---NPTYEFWPPKGPGP-GPV--TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--------SI 192 (243)
T ss_pred CCCCEEEEeCcC---CCcccccCCccCCC-Cce--eeecchhhhccCccccCceEEEcCCCCEEEEEcCC--------cE
Confidence 799999988654 23344443211100 000 00011111111 1 12345667999999988654 46
Q ss_pred EEEccCCCee
Q 013338 382 IYDARRTPLI 391 (445)
Q Consensus 382 vwd~~~~~~~ 391 (445)
|||..+++.+
T Consensus 193 i~d~~~n~v~ 202 (243)
T PF07250_consen 193 IYDYKTNTVV 202 (243)
T ss_pred EEeCCCCeEE
Confidence 7788877653
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.32 E-value=14 Score=33.80 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=50.4
Q ss_pred CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC--CeEEEEeCCCCCc---cccc-CCCCCeeEEEECCCC
Q 013338 234 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTS---EPWS-STSGFVTGATWDPEG 307 (445)
Q Consensus 234 ~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--g~v~iwd~~~~~~---~~~~-~~~~~v~~~~~sp~~ 307 (445)
.|.+.-||..+.....+...-.-.+.++.|||+.+++.+-.- ...++| +...+. ..+. +..+..-.+..+++|
T Consensus 198 ~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~LPG~PDNIR~~~~G 276 (376)
T KOG1520|consen 198 TGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEGLPGYPDNIRRDSTG 276 (376)
T ss_pred ccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhcCCCCCcceeECCCC
Confidence 378888998887766666666777889999999998876432 334555 333332 2222 244555566778888
Q ss_pred CeEE
Q 013338 308 RMIL 311 (445)
Q Consensus 308 ~~l~ 311 (445)
.+-+
T Consensus 277 ~fWV 280 (376)
T KOG1520|consen 277 HFWV 280 (376)
T ss_pred CEEE
Confidence 7655
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=90.31 E-value=18 Score=35.17 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=39.8
Q ss_pred CCCeEEEEEecC---CeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEecC--------------CeEEE
Q 013338 223 DGRYLASASYES---SSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD--------------GTFYL 280 (445)
Q Consensus 223 ~~~~l~~~~~d~---g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~d--------------g~v~i 280 (445)
+++.++.++.+. ..+.+||+.+.+...+... .....+++ .-+++.++.|+.. ..+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEE
Confidence 566666666441 2689999988876554321 11111222 2256677777743 24889
Q ss_pred EeCCCCCcccc
Q 013338 281 WETNTWTSEPW 291 (445)
Q Consensus 281 wd~~~~~~~~~ 291 (445)
||+.+.+...+
T Consensus 407 ~D~~t~~W~~~ 417 (470)
T PLN02193 407 LDTETLQWERL 417 (470)
T ss_pred EEcCcCEEEEc
Confidence 99988765433
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=90.20 E-value=2.2 Score=30.17 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=35.9
Q ss_pred ecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 273 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..+|.+.-||..+++...+...-...+.+++++|+.+++++-. ..-++.+.|
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et--~~~Ri~ryw 85 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET--GRYRILRYW 85 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG--GGTEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec--cCceEEEEE
Confidence 3467899999999887665544556789999999999998854 334445544
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=89.98 E-value=15 Score=33.51 Aligned_cols=53 Identities=4% Similarity=-0.092 Sum_probs=28.9
Q ss_pred CCCCeEEEEEecCC---eEEEEEccCCCceeeecCC---CC-----eeEEEEcCCCCEEEEEecC
Q 013338 222 PDGRYLASASYESS---SFTIWDVAQGLGTPIRRGF---GG-----LSILKWSPTGDYFFAAKFD 275 (445)
Q Consensus 222 p~~~~l~~~~~d~g---~v~vwd~~~~~~~~~~~~~---~~-----v~~~~~sp~g~~l~~~~~d 275 (445)
.+++..+.|+.+.. .+.+||..+.+...+.... .. ...+. ..+++.++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~-~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIK-INESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEE-ECCCEEEEECCcC
Confidence 35677777776521 3568898887665443211 11 11122 2356777777765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.75 E-value=4.7 Score=38.28 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=54.4
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.|..+..++.|..++.++.+|.+..+=.+.. +...+......|+|-.+.-+.+++. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-s--------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-S--------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-c---------------------
Confidence 4677888999999998888886554432222 2222333333444444433322221 1
Q ss_pred cccCccccccccccCCCccceEEeCCCC---CEEEEEEcCCCcccceEEEEEEccCC
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
..|-.+..++|+|+. ..|..-+.| +.||+||+...
T Consensus 163 -------------s~~ltl~Qa~WHP~S~~D~hL~iL~sd------nviRiy~lS~~ 200 (741)
T KOG4460|consen 163 -------------STSLTLKQAAWHPSSILDPHLVLLTSD------NVIRIYSLSEP 200 (741)
T ss_pred -------------CCceeeeeccccCCccCCceEEEEecC------cEEEEEecCCc
Confidence 011146778899975 566666667 89999998753
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.42 E-value=13 Score=35.28 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=53.9
Q ss_pred eEEEEEccC-CCceeeecCCCCeeEEEEcC----CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCe
Q 013338 236 SFTIWDVAQ-GLGTPIRRGFGGLSILKWSP----TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 236 ~v~vwd~~~-~~~~~~~~~~~~v~~~~~sp----~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~ 309 (445)
.|.-.|.+- |..+.....+..++.-.|+. ...++++++..|-|++||.-.... ..+.+.+..|..+..+.+|++
T Consensus 538 svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 538 SVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred ceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE
Confidence 455555543 33333333333333333332 455899999999999999766555 446677888999999999999
Q ss_pred EEEEEcC
Q 013338 310 ILLAFAG 316 (445)
Q Consensus 310 l~~~~~~ 316 (445)
+++.|..
T Consensus 618 ilaTCk~ 624 (776)
T COG5167 618 ILATCKN 624 (776)
T ss_pred EEEeecc
Confidence 9987653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=89.38 E-value=17 Score=33.40 Aligned_cols=54 Identities=15% Similarity=-0.007 Sum_probs=31.2
Q ss_pred eEEEEEccCCCceeeecC---C-CCeeEEEEcCCCCEEEEEecC--------------CeEEEEeCCCCCcc
Q 013338 236 SFTIWDVAQGLGTPIRRG---F-GGLSILKWSPTGDYFFAAKFD--------------GTFYLWETNTWTSE 289 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~---~-~~v~~~~~sp~g~~l~~~~~d--------------g~v~iwd~~~~~~~ 289 (445)
.+.+||+.+.+...+... . ......+...+++.++.|+.. +.++.||+.+.+-.
T Consensus 218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 688999988776554321 1 111111122256777777742 26888998876653
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=89.36 E-value=15 Score=32.78 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=40.5
Q ss_pred EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe
Q 013338 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 273 (445)
+..|. +|++-++=+.. |.+..+|.++|+...+..-.+....++|. |++++++.
T Consensus 207 SPRWh-dgrLwvldsgt-Gev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 207 SPRWY-QGKLWLLNSGR-GELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCcEe-CCeEEEEECCC-CEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 33443 56666666666 79999999989888887778889999997 88887664
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.33 E-value=2.4 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=21.0
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
|++++|+++..+. ++|.++|..+++.+
T Consensus 1 pd~~~lyv~~~~~-----~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGS-----NTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCC-----CEEEEEECCCCeEE
Confidence 6888888876543 78999999876655
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.22 E-value=15 Score=32.57 Aligned_cols=208 Identities=16% Similarity=0.160 Sum_probs=104.8
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC------CCceeee-c------CCCCeeEEEEcCCCC------------
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ------GLGTPIR-R------GFGGLSILKWSPTGD------------ 267 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~------~~~~~~~-~------~~~~v~~~~~sp~g~------------ 267 (445)
..-+.++++|.+.+-++.... +...+||... .+...+. . .....+.+.|+....
T Consensus 23 ~N~WGia~~p~~~~WVadngT-~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGT-GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCc-ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 346789999988666655545 6999999871 1111111 1 234677777774332
Q ss_pred EEEEEecCCeEEEEeCCCCCc------ccccC-CCCC-eeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 268 YFFAAKFDGTFYLWETNTWTS------EPWSS-TSGF-VTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~~------~~~~~-~~~~-v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.++.+++||+|.-|...-... ..+.. .... -..+++.. .+.+|+.+.- ..+.|++.+..-......-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 257788999999998543222 11211 1122 34555553 3566665422 2345555443211000000
Q ss_pred CccccccccccCCC---ccceEEeCCCCCEEEEEE-cCCCccc------ceEEEEEEccCCCeeeeeeeeeee--CCCCC
Q 013338 338 PVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSY-KGGDDIY------KGLIAIYDARRTPLISLSLIGFIR--GPGDN 405 (445)
Q Consensus 338 ~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s-~d~~d~~------d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~ 405 (445)
..... .+...- .|..+ .++++++-. .|.+... -|.|.+||+.. +++ +.+. +.-..
T Consensus 179 ~F~DP---~iPagyAPFnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~-----~r~as~g~LNa 245 (336)
T TIGR03118 179 SFIDP---ALPAGYAPFNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLL-----RRVASSGRLNA 245 (336)
T ss_pred CccCC---CCCCCCCCcceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEE-----EEeccCCcccC
Confidence 00000 000000 11111 223322211 1111000 17899999874 332 2332 34456
Q ss_pred CCceeEeec--CCCCCCCeEEEEecCeeeEeeeee
Q 013338 406 PKPVAFSFH--DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 406 v~~v~~spd--g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.|+..|- |+ ..+.+|.=...+|+|..|+..
T Consensus 246 PWG~a~APa~FG~-~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 246 PWGLAIAPESFGS-LSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CceeeeChhhhCC-CCCCeEEeecCCceeEEecCC
Confidence 788888775 33 367777666889999999854
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.27 E-value=21 Score=32.90 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCeEEEEEecC----------CeEEEEEccCCCceeeecCC------CCeeEEEEcCCCCEEEEEecC-----------
Q 013338 223 DGRYLASASYES----------SSFTIWDVAQGLGTPIRRGF------GGLSILKWSPTGDYFFAAKFD----------- 275 (445)
Q Consensus 223 ~~~~l~~~~~d~----------g~v~vwd~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~~~~~d----------- 275 (445)
+++.++.|+.+. ..+.+||..+.+...+.... .....+. -+++.++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccce
Confidence 566667766431 14778898877654433211 1111222 256666655432
Q ss_pred --CeEEEEeCCCCCcccc
Q 013338 276 --GTFYLWETNTWTSEPW 291 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~ 291 (445)
..|.+||+.+.+-..+
T Consensus 215 ~~~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 215 ESNAVQFFDPASGKWTEV 232 (341)
T ss_pred ecCceEEEEcCCCcEEec
Confidence 4689999988766443
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.94 E-value=22 Score=32.70 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=63.5
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC-----CCeeEEEEcCCCC--------------EE---E
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPTGD--------------YF---F 270 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~-----~~v~~~~~sp~g~--------------~l---~ 270 (445)
++...++|...+.-|+.+..-- -+..-+...+....+.... .-.+++..+++|. ++ +
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 5667899999886666664332 3344444444332222211 1123344444332 11 2
Q ss_pred EEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 271 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.+..+|.+.-||..+...+.+...-.-.+.++.|||+.+++++-....++..
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~r 245 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKR 245 (376)
T ss_pred cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeee
Confidence 3345688888998888776666555567889999999999987443333333
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=87.70 E-value=34 Score=34.67 Aligned_cols=111 Identities=8% Similarity=-0.064 Sum_probs=67.3
Q ss_pred ceeEEEECC--CCCeEEEEEecCCeEEEEEccC-------C----C---------ceeeecCCCCeeEEEEc--CCCCEE
Q 013338 214 QITALSWGP--DGRYLASASYESSSFTIWDVAQ-------G----L---------GTPIRRGFGGLSILKWS--PTGDYF 269 (445)
Q Consensus 214 ~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~-------~----~---------~~~~~~~~~~v~~~~~s--p~g~~l 269 (445)
.|+.+...- +...|+.+..| |.|.+|.++. . . ..-.......+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~Dd-G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDD-GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecC-CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 455555543 33445555555 8999996531 0 0 01112234678999998 778888
Q ss_pred EEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCC-----CeEEEEEcCCceEEEEEe
Q 013338 270 FAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG-----RMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~-----~~l~~~~~~~~~~~~~~~ 325 (445)
|+++....|.||-...... ..-..+...|-+++|-++. ...+++++-.+.+..+++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888777776554221 1122356678889987654 224445555677788777
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.63 E-value=3.5 Score=29.19 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=32.4
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 274 (445)
|.+..||..+++...+...-...+.|++++|+.+++++-.
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred cCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 7899999999987777766678899999999998877643
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.8 Score=24.03 Aligned_cols=32 Identities=25% Similarity=0.623 Sum_probs=20.4
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec-C--CeEEEE
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF-D--GTFYLW 281 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~-d--g~v~iw 281 (445)
+......-....|+|||++|+.++. + |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3344566778999999999876554 4 555454
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=33 Score=34.30 Aligned_cols=162 Identities=11% Similarity=0.139 Sum_probs=84.4
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCCeeEEEEcCCCCEEEEEec--CC--eEEEEeCCC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAKF--DG--TFYLWETNT 285 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~--dg--~v~iwd~~~ 285 (445)
.+.+++.++++..++....+...+.+..+..+.. .........++...|.++| .+-+... ++ .+++..- +
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6778999999999888876633566655533322 1111123456677777776 4544422 12 2555543 3
Q ss_pred CCcccc--cCCC-CCeeEEEECCCCCeEEEEEcC--CceEEEEEeccCCCCccccccCcccccccccc-CCCccceEEeC
Q 013338 286 WTSEPW--SSTS-GFVTGATWDPEGRMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWD 359 (445)
Q Consensus 286 ~~~~~~--~~~~-~~v~~~~~sp~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s 359 (445)
++...+ .... ..|..+..|+||..++.-.+. ...+.+-.+-...... . .......+. ....+.+++|.
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~-----~l~~~~~l~~~l~~v~~~~W~ 515 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-V-----SVEEFRSLAPELEDVTDMSWA 515 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-E-----EeeccEEeccCCCccceeEEc
Confidence 333211 1222 379999999999988864432 1222222221111000 0 111111221 12268999999
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.++.+++.+...+++ ..+++.++.
T Consensus 516 ~~~sL~Vlg~~~~~~---~~v~~v~vd 539 (599)
T PRK13613 516 GDSQLVVLGREEGGV---QQARYVQVD 539 (599)
T ss_pred CCCEEEEEeccCCCC---cceEEEecC
Confidence 999877755433211 344444444
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.21 E-value=31 Score=33.70 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=33.7
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCC-----CCe--eEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ-----RDV--KVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v--~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+..+.+++.++.+.-.|.. +|+.+-....... ..+ ..++... +..++++..++.|..+|.+++
T Consensus 61 ~g~vy~~~~~g~l~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~-~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAA--TGKVLWRYDPKLPADRGCCDVVNRGVAYWD-PRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECC--CChhhceeCCCCCccccccccccCCcEEcc-CCeEEEecCCCeEEEEECCCC
Confidence 3345556677877777764 4554443321111 000 0111111 257777778899999888744
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=33 Score=33.89 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=91.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..+++.++++..+|....++.+.++... +.... +. ....++.-+|.++| .+.++......++......+....
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~---~~~~~-~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~ 408 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGD---RDAVL-LD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP 408 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCC---Cccee-ec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE
Confidence 4788999999999988777777776542 22222 22 23357778888885 555554443445544432222211
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEcc--CCCceee-------
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVA--QGLGTPI------- 250 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~--~~~~~~~------- 250 (445)
+. ........|..+..|+||..++..... +++|.+--+. .+....+
T Consensus 409 v~-----------------------v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l 465 (557)
T PRK13615 409 VA-----------------------VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLEL 465 (557)
T ss_pred ee-----------------------ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEc
Confidence 11 111123689999999999998876542 1356554332 2211222
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCC
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW 286 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~ 286 (445)
......+.++.|..++..++.+. .+..+++..+...
T Consensus 466 ~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 466 LASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred ccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 11234889999998888766552 2456777777744
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=86.81 E-value=5.1 Score=41.06 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=61.0
Q ss_pred eEEEEEecCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEE-EecCC-----eEEEEeCCCCCc--ccccCCCC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFA-AKFDG-----TFYLWETNTWTS--EPWSSTSG 296 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~-~~~dg-----~v~iwd~~~~~~--~~~~~~~~ 296 (445)
.|+......|.+.+-|........+ ..+...|.+.+|||||++|+. .+.++ .|++-|+++... .++...+.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 4555554435888889888777766 777889999999999999987 44443 588889887544 44555556
Q ss_pred CeeEEEECCCCCeEE
Q 013338 297 FVTGATWDPEGRMIL 311 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~ 311 (445)
.|-.-...++|..++
T Consensus 400 aiprwrv~e~gdt~i 414 (912)
T TIGR02171 400 AIPRWRVLENGDTVI 414 (912)
T ss_pred cccceEecCCCCeEE
Confidence 666666667666544
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.61 E-value=26 Score=32.12 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=83.6
Q ss_pred CCCeeEEEECcCCCcEEEEecCCc------EEEEccCCCC-CccccccccccccccccCCCCCceEEEEeecccC-----
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCKGG------ICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----- 211 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~dg~------i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 211 (445)
-+.+..|.+.++++.+++.+.++. +..+++.... ....+... -...+....
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~L~~~~G~~~~ 81 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTIL-----------------DMIPLRDPDGQPFP 81 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEec-----------------cceeccCCCCCcCC
Confidence 456788999977788888888777 5555554311 11110000 000011110
Q ss_pred --CCceeEEEECCCCCeEEEEEec------CCeEEEEEccCCCce-ee---------------ecCCCCeeEEEEcCCCC
Q 013338 212 --GEQITALSWGPDGRYLASASYE------SSSFTIWDVAQGLGT-PI---------------RRGFGGLSILKWSPTGD 267 (445)
Q Consensus 212 --~~~v~~~~~sp~~~~l~~~~~d------~g~v~vwd~~~~~~~-~~---------------~~~~~~v~~~~~sp~g~ 267 (445)
....-++++.++|.++++.-.+ . .|+.++.. |+.. .+ .......-+++++|+|+
T Consensus 82 ~~~~D~Egi~~~~~g~~~is~E~~~~~~~~p-~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 82 KNGLDPEGIAVPPDGSFWISSEGGRTGGIPP-RIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred cCCCChhHeEEecCCCEEEEeCCccCCCCCC-EEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC
Confidence 1134477886677666654333 3 67777766 4331 11 11235678999999999
Q ss_pred EEEEEecC-----C--e-------EEE--EeCCCCC-c-c----cccC-----CCCCeeEEEECCCCCeEEEE
Q 013338 268 YFFAAKFD-----G--T-------FYL--WETNTWT-S-E----PWSS-----TSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 268 ~l~~~~~d-----g--~-------v~i--wd~~~~~-~-~----~~~~-----~~~~v~~~~~sp~~~~l~~~ 313 (445)
.|+++.+. + . +++ ||..+.. . . .+.. ....+..+.+-+++++++.=
T Consensus 160 ~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 160 TLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred EEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 77665432 2 1 444 4554422 1 1 1222 45678899999999987753
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.39 E-value=6.4 Score=32.11 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=23.7
Q ss_pred ccceEEeCCCC------CEEEEEEcCCCcccceEEEEEEccC
Q 013338 352 GIEKIAWDASG------ERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 352 ~v~~~~~sp~g------~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+.+++|||-| .+||+...+ +.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~------~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSN------GRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCC------CeEEEEecCC
Confidence 58999999954 367777777 8999999764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=86.11 E-value=46 Score=34.57 Aligned_cols=78 Identities=14% Similarity=0.005 Sum_probs=54.6
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee----c----------------CCCCee
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----R----------------GFGGLS 258 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~----~----------------~~~~v~ 258 (445)
..|.....+.-+ +.|.++....-+..++.+-.| |+|.++|..+-+..... . .-..+.
T Consensus 248 ~~l~~~~~i~~~--~~V~si~~~~~~~~v~~~~~D-GsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~ 324 (753)
T PF11635_consen 248 YRLRRLDDITLN--KRVVSITSPELDIVVAFAFSD-GSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPL 324 (753)
T ss_pred eeEEEecccccC--CeEEEEEecccCcEEEEEEcC-CeEEEEecCcchhhcccccccCCccccccccccccccccCCCCc
Confidence 345555555544 578999888888888888888 89999998765332111 0 011344
Q ss_pred EEEEcCCCCEEEEEecCCeEE
Q 013338 259 ILKWSPTGDYFFAAKFDGTFY 279 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~ 279 (445)
.++|||.+.-++.-..+|.+.
T Consensus 325 ~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 325 HVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred eEEECcccceEEEEecCCCce
Confidence 688999999999999898855
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=86.07 E-value=12 Score=35.19 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=29.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
..+.+++.+|++++.++...- |.|.++|+.++...++.
T Consensus 308 R~~~~i~~sP~~~laA~tDsl-GRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSL-GRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCC-CcEEEEECCCChhhhhh
Confidence 468899999998877775444 89999999988665443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.95 E-value=29 Score=32.22 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=97.9
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEc----CCCCE--EEEEec-C---CeEEEEeCC--CCCccc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDY--FFAAKF-D---GTFYLWETN--TWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~--l~~~~~-d---g~v~iwd~~--~~~~~~ 290 (445)
...+++..... +-+.+||+.......+.. +.++.+..- -.|+. |++++. + .+|++|-+. ++.+..
T Consensus 67 ~kSlIigTdK~-~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKK-GGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETT-TEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCC-CCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 33344444444 799999998776554432 344444321 13443 444443 2 468898665 343333
Q ss_pred ccC-------CCCCeeEEEE--CC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCC
Q 013338 291 WSS-------TSGFVTGATW--DP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 360 (445)
Q Consensus 291 ~~~-------~~~~v~~~~~--sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 360 (445)
+.. ....+..+|+ ++ +|.+.+.....++....+++...... .+....++++.....+..++...
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g------~v~~~lVR~f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG------KVSATLVREFKVGSQPEGCVVDD 217 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS------SEEEEEEEEEE-SS-EEEEEEET
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC------cEeeEEEEEecCCCcceEEEEec
Confidence 221 1123566776 33 56776666667777888887643211 01334566776655688888888
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC--CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
...+|+.+-++ .-|.-|+.+...-.....+....+ ...-|-.++.-..+. ..+-+++..-.++...+|+.
T Consensus 218 e~g~LYvgEE~------~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 218 ETGRLYVGEED------VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD-GKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp TTTEEEEEETT------TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC-C-EEEEEEEGGGTEEEEEES
T ss_pred ccCCEEEecCc------cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC-CCeEEEEEcCCCCeEEEEec
Confidence 88889888766 455666665222111122222222 223455666644321 12334444444555666653
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=16 Score=35.57 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=34.2
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS 288 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~ 288 (445)
+++..+.| |.+.+||..+++...+.... .....+. -+++..+.|+.+ ..+..||..+.+.
T Consensus 407 ~~~IYv~G----G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 407 GRRLFLVG----RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCEEEEEC----CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 45555554 45778999887665443221 1222222 267777777754 3567777776543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=85.89 E-value=39 Score=33.54 Aligned_cols=164 Identities=12% Similarity=0.094 Sum_probs=88.3
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC--eEEEEeCC-CCCc--
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG--TFYLWETN-TWTS-- 288 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~-~~~~-- 288 (445)
.+.+++.+++++.++....+ + -.+|-...+......-....++...|.++| .+-+...+. .|..+.-. ++..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~-~-~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS-R-TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCC-C-cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 67788999999998888666 3 244433323332222223457778888887 565554433 44444432 1111
Q ss_pred -----ccccCCCC-CeeEEEECCCCCeEEEEEcCCce--EEEEEeccCCCCccccccCccccccccccCCCccceEEeCC
Q 013338 289 -----EPWSSTSG-FVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 360 (445)
Q Consensus 289 -----~~~~~~~~-~v~~~~~sp~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 360 (445)
.......+ .|..+..|+||..++.-...++. +.+-.+-........ .......+.....+.+++|..
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~-----~L~~~~~~~~~~~~~sl~W~~ 495 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPR-----ELTAPITLAADSDADTGAWVG 495 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeE-----EccCceecccCCCcceeEEcC
Confidence 11222333 49999999999988865422232 333222221110000 111111221113689999999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
++.+++.+...+++ ..+++..+..+
T Consensus 496 ~~sl~V~~~~~~~~---~~~~~v~v~~g 520 (573)
T PRK13614 496 DSTVVVTKASATSN---VVPELLSVDAG 520 (573)
T ss_pred CCEEEEEeccCCCc---ceEEEEEeCCC
Confidence 99877766543332 56778887543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.25 E-value=38 Score=32.88 Aligned_cols=67 Identities=6% Similarity=0.057 Sum_probs=38.6
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecC------CCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS 288 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~------~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~ 288 (445)
+++.++.|+.+. ..+..||+.+.+...+... ......+. -+++.++.++.+ ..+.+||+.+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 556666766531 2467888887655433211 11111222 267777777655 4689999998766
Q ss_pred ccc
Q 013338 289 EPW 291 (445)
Q Consensus 289 ~~~ 291 (445)
..+
T Consensus 356 ~~~ 358 (470)
T PLN02193 356 TQV 358 (470)
T ss_pred EEe
Confidence 443
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=85.15 E-value=28 Score=31.19 Aligned_cols=145 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred eEEEEEccCCCceeeec-------CCCCeeEEEEcCCCC----EEEEEecCC--eEEEEeCCCCCcccccCC--------
Q 013338 236 SFTIWDVAQGLGTPIRR-------GFGGLSILKWSPTGD----YFFAAKFDG--TFYLWETNTWTSEPWSST-------- 294 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~----~l~~~~~dg--~v~iwd~~~~~~~~~~~~-------- 294 (445)
.|.+||+.+++..+... ..+.+..+.+..... .+|.-+..+ -|.|+|+.+++..++..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred ------------CCCeeEEEECC---CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEe
Q 013338 295 ------------SGFVTGATWDP---EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW 358 (445)
Q Consensus 295 ------------~~~v~~~~~sp---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 358 (445)
...+..++.+| ++++|+...-.+...+.+.............. .....++.+-... ....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~-~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ-ALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH--HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc-cccccceeccccCCCCceEEE
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++|..+++--.. +.|..|+..+
T Consensus 194 D~~G~ly~~~~~~------~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGNLYFTDVEQ------NAIGCWDPDG 216 (287)
T ss_dssp ETTTEEEEEECCC------TEEEEEETTT
T ss_pred CCCCcEEEecCCC------CeEEEEeCCC
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=84.87 E-value=17 Score=32.22 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=49.6
Q ss_pred CeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEe------cCCeEEEEeCCCCCcccccC-----CCCCeeEEE
Q 013338 235 SSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK------FDGTFYLWETNTWTSEPWSS-----TSGFVTGAT 302 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~------~dg~v~iwd~~~~~~~~~~~-----~~~~v~~~~ 302 (445)
..|++||..+.+....-. -.+.|+++.|..+.+.++.|. ....+..||..+.....+.. ..+++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 479999998887765543 367899999985655566553 34578999998877644443 246788777
Q ss_pred EC
Q 013338 303 WD 304 (445)
Q Consensus 303 ~s 304 (445)
+.
T Consensus 96 ~~ 97 (281)
T PF12768_consen 96 FI 97 (281)
T ss_pred ee
Confidence 63
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=2.1 Score=39.75 Aligned_cols=161 Identities=12% Similarity=0.076 Sum_probs=85.4
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc-cccccccccccccccCCCCCceEEEEeecccCCCcee-EEEE
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSW 220 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 220 (445)
-...|..+-..|||+.++.-.. ..+.++++....-. +.+.. .-.+.....|+ .+..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~---------------------dspg~~~~~Vte~l~l 276 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVD---------------------DSPGDSRHQVTEQLYL 276 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhh---------------------cCCCchHHHHHHHHHH
Confidence 4456788889999766555444 78888888732211 11100 00110001122 1222
Q ss_pred CCCCCeEEEEEecCCeEEEE-EccCCCceee---e--cC-CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC
Q 013338 221 GPDGRYLASASYESSSFTIW-DVAQGLGTPI---R--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 293 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vw-d~~~~~~~~~---~--~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~ 293 (445)
-..|..+.+++.| |-|.-| |.+.+....+ . .. ...+..+.-..+.+-+++-+.+|++.++.....+......
T Consensus 277 L~Gg~SLLv~~~d-G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 277 LSGGFSLLVVHED-GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred HhCceeEEEEcCC-CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 2355667778888 566554 6654432111 1 11 1233323222234557777888888888665555433333
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.-..+.-+++||++.++++- +.+++....+.+.
T Consensus 356 ~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~Nr 388 (733)
T COG4590 356 AYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLENR 388 (733)
T ss_pred hhcCcceeeeCcccchheee--cCCceEEEEecCC
Confidence 33356678999999999864 3355666665443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=37 Score=32.02 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=76.8
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
...+..+++|.+++++..-..++-||--...-. .-......++++.|.+++..++++.. +.+.. -.+...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~--G~l~~--S~d~G~----- 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG--GGLYV--SKGTGL----- 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC--ceEEE--ecCCCC-----
Confidence 445667788877776654333333443221111 11233556889999999998886633 21111 111100
Q ss_pred ccCccccccccccC--C-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 336 LLPVDLPDIVSLTG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 336 ~~~~~~~~~~~~~~--~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
.+. ......... . ..+.++.|.+++..+++|.. |.+.... ..|+.-. .......-....+.+.|.
T Consensus 312 ~~~--~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~-D~G~tW~--~~~~~~~~~~~ly~v~f~ 379 (398)
T PLN00033 312 TEE--DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------GILLRST-DGGKSWK--RDKGADNIAANLYSVKFF 379 (398)
T ss_pred ccc--ccceeecccCCCCcceEEEEEcCCCcEEEEECC-------CcEEEeC-CCCccee--EccccCCCCcceeEEEEc
Confidence 000 001111111 1 15889999999888777643 5555443 4443221 111111224567788887
Q ss_pred ecCCCCCCCeEEEEecCeeeEee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++++. .+.| ++|.|..|
T Consensus 380 ~~~~g-----~~~G-~~G~il~~ 396 (398)
T PLN00033 380 DDKKG-----FVLG-NDGVLLRY 396 (398)
T ss_pred CCCce-----EEEe-CCcEEEEe
Confidence 76552 3444 67776554
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=84.03 E-value=47 Score=32.88 Aligned_cols=160 Identities=13% Similarity=0.146 Sum_probs=88.3
Q ss_pred eEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCccc--cc
Q 013338 216 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSEP--WS 292 (445)
Q Consensus 216 ~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~~~--~~ 292 (445)
.+++.+++++.++....+ +.+.++..... ...+ .....++...|.++| .+-+.-.....++..... +.... ..
T Consensus 337 ~s~avS~dg~~~A~v~~~-~~l~vg~~~~~-~~~~-~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-GVWSVGDGDRD-AVLL-DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCC-ceEEEecCCCc-ceee-ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 678999999998888766 57777765522 2222 223456777788777 555554433444444322 22211 11
Q ss_pred -CCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCccccccCccccccccc-cCCCccceEEeCCCCCEEEEE
Q 013338 293 -STSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVS 368 (445)
Q Consensus 293 -~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~ 368 (445)
.....|..+..|+||..++.-.+ +...+..-.+-. .......+ . .....+ .....+.+++|..++...+.+
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R-~~~~P~~L---~-~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVR-DGGVPTSL---T-TTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEe-CCCcceEe---e-eccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 23467999999999998876433 222333322221 11100001 0 111112 122278999999999876665
Q ss_pred EcCCCcccceEEEEEEccC
Q 013338 369 YKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~ 387 (445)
...+++ ..+++..+..
T Consensus 488 ~~~~~~---~~v~~v~v~g 503 (557)
T PRK13615 488 LAPDGE---RQVELHQVGG 503 (557)
T ss_pred ccCCCC---ceEEEEECCC
Confidence 333332 6677777763
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.53 E-value=9.5 Score=36.36 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=54.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEE---c--c--CCCCcc--eeE--------EecCCCCCeeEEEECcCC---Cc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRD---Y--E--DSEGKD--ACI--------LTSDSQRDVKVLEWRPNG---GR 158 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~---~--~--~~~~~~--~~~--------~~~~~~~~v~~l~~spd~---~~ 158 (445)
.+.|..+..|+.|..+|..+.+|.+.++- + + -.+|+. .+. ++....-.+..++|+|+. .+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 45799999999999999999998765542 1 0 012321 111 111222346788999974 57
Q ss_pred EEEEecCCcEEEEccCCCCCc
Q 013338 159 SLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 159 l~~~~~dg~i~vw~~~~~~~~ 179 (445)
|+.-..|+.|++|++....+.
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 888889999999999855443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.46 E-value=32 Score=30.49 Aligned_cols=233 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
|..+...-+-.++..|-.--..-+|+....+......... -.+-+..+.++.+ +.+.+-.+..++|.|+.....+..
T Consensus 45 vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~-~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~ 121 (370)
T COG5276 45 VSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVIN-ARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTL 121 (370)
T ss_pred cccccccccccccccCceEeeccccCcccccCcceEEEEe-hhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcce
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec----CCCCe
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGL 257 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----~~~~v 257 (445)
+... +-.=..-.|.-.|++..++..++ -+.+.|+.+.....+.+ .....
T Consensus 122 ~~~l--------------------------nt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 122 IGFL--------------------------NTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred eccc--------------------------cCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCCCc
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
..++.| |++...+..|+-+.+.|+.....-.+. .....+.++..+++..+++....+ +..++..+..
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg---vlivd~s~~s----- 244 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG---VLIVDVSGPS----- 244 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc---eEEEecCCCC-----
Q ss_pred cccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 335 HLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
....+....... .++.+..+-.-.+++=+... +.+-|+.+
T Consensus 245 -----sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g--------l~~idisn 286 (370)
T COG5276 245 -----SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG--------LPIIDISN 286 (370)
T ss_pred -----CceEeeccccCCcccccceecccceeeeeccccC--------ceeEeccC
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.60 E-value=35 Score=32.72 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=68.1
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCC--------CEEEEEecCCeEEEEeCCCCCc-ccccC-----CCCCeeEE
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTG--------DYFFAAKFDGTFYLWETNTWTS-EPWSS-----TSGFVTGA 301 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l~~~~~dg~v~iwd~~~~~~-~~~~~-----~~~~v~~~ 301 (445)
.++-.|+..|+.......+..+ -+.|.|+. +.|+ |-.+..|.-.|.+-... ..... ......+.
T Consensus 491 kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~ 568 (776)
T COG5167 491 KLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSG 568 (776)
T ss_pred cceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcccccccccc
Confidence 5666677777665444434444 56777743 2344 44455666666654332 11111 12223333
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
.-. ..-++++++. -+.+++++.- .......+.+-+ .|..+..+.+|+++++.+. ..+
T Consensus 569 ~tT-esGyIa~as~----kGDirLyDRi----------g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-------~yl 626 (776)
T COG5167 569 MTT-ESGYIAAASR----KGDIRLYDRI----------GKRAKTALPGLGDAIKHIDVTANGKHILATCK-------NYL 626 (776)
T ss_pred ccc-cCceEEEecC----CCceeeehhh----------cchhhhcCcccccceeeeEeecCCcEEEEeec-------ceE
Confidence 333 3346666632 3445554431 112222344444 7889999999999887765 578
Q ss_pred EEEEcc
Q 013338 381 AIYDAR 386 (445)
Q Consensus 381 ~vwd~~ 386 (445)
.+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 888875
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=81.17 E-value=47 Score=30.93 Aligned_cols=192 Identities=11% Similarity=0.074 Sum_probs=102.8
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC----cCCCc--EEEEec-C---CcEEEEccCCCCC
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR----PNGGR--SLSVGC-K---GGICIWAPSYPGN 178 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s----pd~~~--l~~~~~-d---g~i~vw~~~~~~~ 178 (445)
|...+|+....++-+.+||++ |+.+..+.. +.++.+..- -.|+. |++++. + ..|++|.+.....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~---Gk~lq~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD---GKELQSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT---S-EEEEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC---CcEEEeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 455677777788999999984 776665532 334444331 12333 344443 2 4699998873211
Q ss_pred -ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CC-CCCeEEEEEecCCeEEEEEccC---CCc----
Q 013338 179 -AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GP-DGRYLASASYESSSFTIWDVAQ---GLG---- 247 (445)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~~~~l~~~~~d~g~v~vwd~~~---~~~---- 247 (445)
...+.... ..+... ...+..+|+ +| +|++.+..+..+|.+.-|.+.. +..
T Consensus 140 ~L~~v~~~~------------------~p~~~~-~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 140 ELTDVTDPA------------------APIATD-LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp EEEE-CBTT------------------C-EE-S-SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred cceEcCCCC------------------cccccc-cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 11111000 001111 134566665 44 5666666555558888887752 221
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccc---c--CCCCCeeEEEEC--CCC-CeEEEEEcC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW---S--STSGFVTGATWD--PEG-RMILLAFAG 316 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~---~--~~~~~v~~~~~s--p~~-~~l~~~~~~ 316 (445)
.+.+.....+..|.......+|..+-++.-|+-|+.+.... ..+ . .....+..+++- .++ .||+++..+
T Consensus 201 VR~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 201 VREFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EEEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred EEEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 33334467899999998888999999999999998873321 111 1 234567777763 344 467767665
Q ss_pred CceEEEEEe
Q 013338 317 SLTLGSIHF 325 (445)
Q Consensus 317 ~~~~~~~~~ 325 (445)
+....+++.
T Consensus 281 ~~sf~Vy~r 289 (381)
T PF02333_consen 281 DNSFAVYDR 289 (381)
T ss_dssp GTEEEEEES
T ss_pred CCeEEEEec
Confidence 555555543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.03 E-value=92 Score=33.54 Aligned_cols=28 Identities=4% Similarity=0.119 Sum_probs=24.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDY 128 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~ 128 (445)
....++|+|.-.++|.++.+|.++++-.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecc
Confidence 4567899999999999999999999864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 445 | ||||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-04 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-04 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 |
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.98 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.87 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.75 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.75 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.66 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.64 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.63 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.63 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.6 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.6 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.57 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.54 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.53 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.52 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.5 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.48 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.47 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.47 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.46 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.44 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.4 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.39 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.37 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.34 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.34 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.32 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.32 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.32 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.31 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.29 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.23 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.22 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.19 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.18 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.99 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.99 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.97 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.93 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.85 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.81 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.81 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.8 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.74 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.71 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.7 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.67 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.67 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.65 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.65 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.64 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.63 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.62 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.61 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.6 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.6 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.6 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.59 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.55 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.52 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.5 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.5 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.47 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.45 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.44 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.44 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.43 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.42 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.42 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.41 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.4 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.39 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.38 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.37 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.36 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.35 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.33 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.31 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.3 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.26 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.25 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.25 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.21 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.2 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.2 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.14 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.13 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.11 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.1 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.04 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.01 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.98 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.96 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.92 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.92 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.92 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.91 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.89 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.83 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.83 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.8 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.76 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.75 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.75 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.74 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.73 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.73 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.61 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.54 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.49 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.45 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.36 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.23 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.18 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.15 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.01 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.92 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.88 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.81 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.61 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.56 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.36 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.35 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.17 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.7 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.07 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.96 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.71 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.62 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.41 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.27 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.67 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.44 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.34 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 92.88 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.7 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 91.51 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 91.39 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 91.09 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 90.58 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 89.47 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 87.96 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 87.92 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 87.68 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 84.55 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 83.74 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 83.0 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-42 Score=311.26 Aligned_cols=281 Identities=14% Similarity=0.149 Sum_probs=231.4
Q ss_pred cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC
Q 013338 99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS 174 (445)
Q Consensus 99 ~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~ 174 (445)
...|++++|+|+ +.+|++|+.|++|+||++....... .....+|...|.+++|++++..+++++.|+.|++||+.
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~-~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEE-EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeee-eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 346999999985 6799999999999999986422122 22346899999999999998888889999999999997
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecC
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRG 253 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~ 253 (445)
.. .++..+..+. ..+.+++|+|++++|++++.+ |.|++||+++++... +..+
T Consensus 111 ~~-------------------------~~~~~~~~~~-~~~~~~~~spdg~~l~~g~~d-g~v~i~~~~~~~~~~~~~~~ 163 (321)
T 3ow8_A 111 NG-------------------------KQIKSIDAGP-VDAWTLAFSPDSQYLATGTHV-GKVNIFGVESGKKEYSLDTR 163 (321)
T ss_dssp TT-------------------------EEEEEEECCT-TCCCCEEECTTSSEEEEECTT-SEEEEEETTTCSEEEEEECS
T ss_pred CC-------------------------CEEEEEeCCC-ccEEEEEECCCCCEEEEEcCC-CcEEEEEcCCCceeEEecCC
Confidence 32 2444555664 789999999999999999999 799999999887644 4556
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
...+.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++++|++++ .++.+..|++.
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~------ 236 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQ------ 236 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETT------
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECC------
Confidence 78899999999999999999999999999999877 56778999999999999999998764 34445555432
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
....+..+.+|. .|.+++|+|++++|++++.| ++|++||+.+++.+ ..+.+|...|++++|
T Consensus 237 -------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~-----~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 237 -------HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD------KSVKVWDVGTRTCV-----HTFFDHQDQVWGVKY 298 (321)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE-----EEECCCSSCEEEEEE
T ss_pred -------CcceeEEEcCCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCEEE-----EEEcCCCCcEEEEEE
Confidence 344566778888 89999999999999999988 99999999987654 467789999999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+|+|++ |+.+-.+|.|.+|+.
T Consensus 299 s~~g~~-----l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 299 NGNGSK-----IVSVGDDQEIHIYDC 319 (321)
T ss_dssp CTTSSE-----EEEEETTCCEEEEEC
T ss_pred CCCCCE-----EEEEeCCCeEEEEeC
Confidence 999874 677778999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=319.75 Aligned_cols=279 Identities=14% Similarity=0.222 Sum_probs=237.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|++++|+|++.+|++|+.|++|+|||+.. ++....+ .+|...|++++|+|++..+++++.|++|++||+...
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~--~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-- 182 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYET--GDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-- 182 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTT--CCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 45799999999999999999999999999964 5555555 579999999999999988999999999999998722
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v 257 (445)
.++..+.+|. ..|.+++|+|++++|++++.| |+|++||++++... .+..|...|
T Consensus 183 -----------------------~~~~~~~~h~-~~V~~v~~~p~~~~l~s~s~D-~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 183 -----------------------ECIRTMHGHD-HNVSSVSIMPNGDHIVSASRD-KTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp -----------------------CEEECCCCCS-SCEEEEEECSSSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSCE
T ss_pred -----------------------ceeEEEcCCC-CCEEEEEEeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeCCCccE
Confidence 2455677785 799999999999999999999 79999999998764 456788899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCC--------------------CCeEEEEEcC
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE--------------------GRMILLAFAG 316 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~--------------------~~~l~~~~~~ 316 (445)
.+++|+|++++|++++.|++|++||+++++. ..+..|...|.+++|+|+ +.+|++++ .
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-~ 316 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-R 316 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-T
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-C
Confidence 9999999999999999999999999999877 567789999999999997 55677663 3
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
++.+..|++ . ....+..+.+|. .|.+++|+|+|++|++++.| +.|++||+.+++.+
T Consensus 317 D~~i~iwd~---~----------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~~~---- 373 (410)
T 1vyh_C 317 DKTIKMWDV---S----------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD------KTLRVWDYKNKRCM---- 373 (410)
T ss_dssp TSEEEEEET---T----------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETT------TEEEEECCTTSCCC----
T ss_pred CCeEEEEEC---C----------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceE----
Confidence 444444443 2 455677788888 89999999999999999988 99999999887654
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.+|...|++++|+|++.+ ++.|..+|.|.+|++
T Consensus 374 -~~~~~h~~~v~~l~~~~~~~~-----l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 -KTLNAHEHFVTSLDFHKTAPY-----VVTGSVDQTVKVWEC 409 (410)
T ss_dssp -EEEECCSSCEEEEEECSSSSC-----EEEEETTSEEEEEC-
T ss_pred -EEEcCCCCcEEEEEEcCCCCE-----EEEEeCCCcEEEEeC
Confidence 467899999999999999875 777888999999986
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=311.15 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=220.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC-----C---CCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-----S---EGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-----~---~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw 171 (445)
..|.+++|+|||++|++++ |+++++|+... . ...........+...|++++|+|+ +.+++++.||.|+||
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEEEEE
Confidence 4599999999999999877 66777776321 0 011111112236678999999999 689999999999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-e
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~ 250 (445)
|+...+.... ....+.+|. ..|++++|+|+|++|++++.| |+|++||+++++... +
T Consensus 109 d~~~~~~~~~---------------------~~~~~~~H~-~~V~~v~~spdg~~l~sgs~d-~~i~iwd~~~~~~~~~~ 165 (344)
T 4gqb_B 109 ELDENETLIV---------------------SKFCKYEHD-DIVSTVSVLSSGTQAVSGSKD-ICIKVWDLAQQVVLSSY 165 (344)
T ss_dssp EECTTSSCEE---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEE
T ss_pred eccCCCceeE---------------------eeccccCCC-CCEEEEEECCCCCEEEEEeCC-CeEEEEECCCCcEEEEE
Confidence 9985433221 222355675 899999999999999999999 799999999987754 5
Q ss_pred ecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc-cc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 251 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..|...|.+++|+|++. +|++++.|++|++||+++++.. .+ ..+...+.+++|+|++..+++++..++.+..|++.
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 56889999999999975 6889999999999999998873 23 34566789999999765444444455555555442
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
..+.+..+.+|. .|++++|+|++ ++|++++.| ++|+|||++++++. .+.+|.+
T Consensus 246 -------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D------~~i~vwd~~~~~~~------~~~~H~~ 300 (344)
T 4gqb_B 246 -------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED------CSLAVLDSSLSELF------RSQAHRD 300 (344)
T ss_dssp -------------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTCCEEE------EECCCSS
T ss_pred -------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCcEE------EEcCCCC
Confidence 456677888998 89999999998 579999988 99999999987654 4678999
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
.|++++|+|+++. +++.|-.||.|.+|.+-..+
T Consensus 301 ~V~~v~~sp~~~~----llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 301 FVRDATWSPLNHS----LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CEEEEEECSSSTT----EEEEEETTSCEEEEECCC--
T ss_pred CEEEEEEeCCCCe----EEEEEcCCCeEEEEECCCCC
Confidence 9999999999875 57667679999999886543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=304.34 Aligned_cols=307 Identities=18% Similarity=0.282 Sum_probs=234.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|++++|+|+|++||+|+.|++|+||+++.........+..+|...|++++|+|+++.|++++.|+.+++|++...
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~---- 93 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD---- 93 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC----
Confidence 5899999999999999999999999998642211223344589999999999999999999999999999998722
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eeeecCCCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGG 256 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~~~~~~~ 256 (445)
.+.+...+.+|. ..|.+++|+|++++|++++.| |+|++||+..+.. ..+..|...
T Consensus 94 -------------------~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 94 -------------------DFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRD-KSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp --------------------EEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred -------------------CeEEEEEccCCC-CCceEEEEeCCCCEEEEEECC-CeEEEEECCCCCCeEEEEEecCcCCC
Confidence 234566788886 899999999999999999999 7999999987653 234567889
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
|.+++|+|++++|++++.|+.|++||.++++. ..+.+|...|++++|+|++++|++++ .++.+..|+.........
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTTC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCcc
Confidence 99999999999999999999999999988753 45678999999999999999999764 445566665432211000
Q ss_pred cc--ccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee---ee-eeeeeeCCCCC
Q 013338 334 AH--LLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS---LS-LIGFIRGPGDN 405 (445)
Q Consensus 334 ~~--~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~---~~-~~~~~~~~~~~ 405 (445)
.. .......++..+.+ |. .|.+++|+|++..|++++.| +.|++|+...+.... .. ......+|...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD------DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT------SCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC------CeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 00 00011223344444 55 89999999999999999988 899999987543110 11 12233589999
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeeccC
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL 443 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~~ 443 (445)
|++++|+|++.. +|+.|-.+|.|.+|++.-...+
T Consensus 306 V~~v~~~p~~~~----~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 306 VNCVAWNPKEPG----LLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEEEEECSSSTT----EEEEEETTSCEEEEEECC----
T ss_pred EeEeEEeCCCce----EEEEcCCCCcEEEEEecCCCCc
Confidence 999999998642 5888889999999998765443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=299.09 Aligned_cols=276 Identities=12% Similarity=0.154 Sum_probs=227.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.|+|||++ ++.....+ ..|..+|.+++|+|+++.+++++.|+.|++||+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~--- 87 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYE--TQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--- 87 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECC--CCceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC---
Confidence 459999999999999999999999999985 35555555 468999999999999999999999999999999832
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v 257 (445)
.++..+.+|. ..|.+++|+|++++|++++.| |+|++||++++.. ..+..|...|
T Consensus 88 ----------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D-~~v~lWd~~~~~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 88 ----------------------EKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFV 143 (304)
T ss_dssp ----------------------CEEEEEECCS-SCEEEEEECSSSSEEEEEETT-SCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred ----------------------cEEEEEeCCC-CcEEEEEEcCCCCEEEEECCC-CeEEEEECCCCcchhhhhcccCCcE
Confidence 2445577786 899999999999999999999 7999999988744 3455788999
Q ss_pred eEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 258 SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 258 ~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.+++|+| ++..|++++.|++|++||+++.+.. . ...+...+..+.|+| ++++|++++ .++.+..|++ .
T Consensus 144 ~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~---~--- 216 (304)
T 2ynn_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDY---Q--- 216 (304)
T ss_dssp EEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEET---T---
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeC---C---
Confidence 9999999 6789999999999999999877652 2 235667899999987 677888664 3444444443 2
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
....+..+.+|. .|..++|+|++++|++++.| ++|++||++++++. +.+..|...+++++|
T Consensus 217 -------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D------g~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~ 278 (304)
T 2ynn_A 217 -------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIAT 278 (304)
T ss_dssp -------TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEE-----EEECCSSSSEEEEEE
T ss_pred -------CCccceeeCCCCCCEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcee-----eeccCCCccEEEEEE
Confidence 455677888998 89999999999999999998 99999999987765 467788889999999
Q ss_pred eecCCCCCCCeEEEEecCeeeE
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~ 433 (445)
+|+++. .+++.|+++|.+.
T Consensus 279 ~~~~~~---~~~asg~~~g~~~ 297 (304)
T 2ynn_A 279 HPTGRK---NYIASGFDNGFTV 297 (304)
T ss_dssp CTTCGG---GCEEEEETTEEEE
T ss_pred CCCCCc---eEEEEecCCceEE
Confidence 998752 2488888888664
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=302.81 Aligned_cols=280 Identities=13% Similarity=0.220 Sum_probs=229.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++|+.|++|+|||+. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++.....
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~- 131 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSY--TTNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG- 131 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECC--CCCcceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-
Confidence 459999999999999999999999999985 35555554 46889999999999999999999999999999874321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.......+.+|. ..|.++.|++++. +++++.| |+|++||+.+++... +..|...|.
T Consensus 132 --------------------~~~~~~~~~~h~-~~v~~~~~~~~~~-l~s~s~d-~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 132 --------------------NVRVSRELAGHT-GYLSCCRFLDDNQ-IVTSSGD-TTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp --------------------SCEEEEEEECCS-SCEEEEEEEETTE-EEEEETT-SCEEEEETTTTEEEEEECCCSSCEE
T ss_pred --------------------cceeEEEecCCC-ccEEEEEECCCCc-EEEEECC-CcEEEEECCCCcEEEEEcCCCCceE
Confidence 123455677886 8999999998875 8888888 799999999887654 456889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|+|++++|++++.|+.|++||+++++. ..+..|...|++++|+|++++|++++ .++.+..|++.
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~----------- 256 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLR----------- 256 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-----------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECC-----------
Confidence 999999999999999999999999999877 56778999999999999999999774 33445544432
Q ss_pred CccccccccccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 338 PVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 338 ~~~~~~~~~~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
....+..+.. +. .|.+++|+|+|++|++++.| +.|++||+.+++.. ..+.+|...|++++|+|+
T Consensus 257 --~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~d 323 (340)
T 1got_B 257 --ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp --TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE-----EEEECCSSCEEEEEECTT
T ss_pred --CCcEEEEEccCCcccceEEEEECCCCCEEEEECCC------CeEEEEEcccCcEe-----eEeecCCCcEEEEEEcCC
Confidence 1222222322 22 69999999999999999988 99999999886654 467899999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|++ |+.|..+|.|.+|+
T Consensus 324 g~~-----l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMA-----VATGSWDSFLKIWN 340 (340)
T ss_dssp SSC-----EEEEETTSCEEEEC
T ss_pred CCE-----EEEEcCCccEEecC
Confidence 875 77787899999885
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=307.72 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=219.7
Q ss_pred CcCCeeEEEEccCCCEEEEEEC------CCeEEEEEccCCCCc-ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISG------STQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~------d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
+...|++++|||||++||+++. |+.+++|+....... .......+|...|++++|+|+ +.+++++.||.|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEEEE
Confidence 3557999999999999999997 678888887432211 122222468889999999999 57888899999999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP- 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~- 249 (445)
||+.......... ....+|. ..|++++|+|++++|++++.| |.|++||+++++...
T Consensus 120 Wd~~~~~~~~~~~---------------------~~~~~h~-~~V~~v~~spdg~~l~sgs~d-g~v~iwd~~~~~~~~~ 176 (357)
T 4g56_B 120 WEILEKESLLVNK---------------------FAKYEHD-DIVKTLSVFSDGTQAVSGGKD-FSVKVWDLSQKAVLKS 176 (357)
T ss_dssp C--------CCCC---------------------EEECCCS-SCEEEEEECSSSSEEEEEETT-SCEEEEETTTTEEEEE
T ss_pred eeccccceeEEEe---------------------eccCCCC-CCEEEEEECCCCCEEEEEeCC-CeEEEEECCCCcEEEE
Confidence 9998443322111 1134564 899999999999999999999 799999999887754
Q ss_pred eecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCccc---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 250 IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
+..|...|++++|+|++. ++++++.|+.|++||+++++... ...+...+.+++|+|++..+++++..++.+..|++
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEEC
Confidence 456889999999999875 78899999999999999987632 33567789999999986554444445555665554
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 403 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (445)
. ..+.+..+.+|. .|++++|+|++ ++||+++.| ++|+|||+++++++ ...+|.
T Consensus 257 ~-------------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~~~~~~~------~~~~H~ 311 (357)
T 4g56_B 257 K-------------NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED------CTVAVLDADFSEVF------RDLSHR 311 (357)
T ss_dssp S-------------CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTSCEEE------EECCCS
T ss_pred C-------------CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC------CEEEEEECCCCcEe------EECCCC
Confidence 3 445667788888 89999999997 578999988 99999999987765 344799
Q ss_pred CCCCceeEee-cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 404 DNPKPVAFSF-HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 404 ~~v~~v~~sp-dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.|++++|+| |++ +|+.|-.||.|.+|++-
T Consensus 312 ~~V~~vafsP~d~~-----~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 312 DFVTGVAWSPLDHS-----KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp SCEEEEEECSSSTT-----EEEEEETTSCEEEEECC
T ss_pred CCEEEEEEeCCCCC-----EEEEEcCCCeEEEEECC
Confidence 9999999999 565 46777789999999874
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=299.67 Aligned_cols=283 Identities=14% Similarity=0.194 Sum_probs=229.0
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.|++|+|||.. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++......
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~--~~~~~~~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSF--TTNKEHAV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT--TCCEEEEE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECC--CCCcceEE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 459999999999999999999999999985 35544444 358889999999999999999999999999998743221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.... ....+.+|. ..|.+++|+|+++.|++++.| |+|++||+++++... +..|...|.
T Consensus 142 ~~~~-------------------~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~D-~~v~lwd~~~~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 142 NMAA-------------------KKKSVAMHT-NYLSACSFTNSDMQILTASGD-GTCALWDVESGQLLQSFHGHGADVL 200 (354)
T ss_dssp CSGG-------------------GCEEEEECS-SCEEEEEECSSSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cccc-------------------cceeeeccC-CcEEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCeEEEEEcCCCCCeE
Confidence 1111 123355675 899999999999999999999 799999999987754 556888999
Q ss_pred EEEEcC--CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 259 ILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 259 ~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
+++|+| ++++|++++.|+.|++||+++++. ..+..|...|++++|+|++++|++++. ++.+..|++..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-D~~v~lwd~~~-------- 271 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLRA-------- 271 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT--------
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEECCC--------
Confidence 999987 478999999999999999999887 566789999999999999999997743 34455544321
Q ss_pred ccCccccccccccCC--C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 336 LLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~--~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
...+..+..+ . .+.+++|+|+|++|++++.| +.|++||+.+++.+ ..+.+|...|++++|+
T Consensus 272 -----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 272 -----DREVAIYSKESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVLKGSRV-----SILFGHENRVSTLRVS 335 (354)
T ss_dssp -----TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEE-----EEECCCSSCEEEEEEC
T ss_pred -----CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC------CcEEEEECCCCceE-----EEEECCCCcEEEEEEC
Confidence 1222222222 2 68899999999999999988 89999999887654 4677999999999999
Q ss_pred ecCCCCCCCeEEEEecCeeeEeee
Q 013338 413 FHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|||++ |+.|-.+|.|.+|+
T Consensus 336 pdg~~-----l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTA-----FCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSC-----EEEEETTSEEEEEC
T ss_pred CCCCE-----EEEEcCCCCEEecC
Confidence 99886 77888899999874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=291.66 Aligned_cols=285 Identities=12% Similarity=0.131 Sum_probs=227.9
Q ss_pred CCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
..|.+++|+|++ ++|++|+.|++|++|++.....+. ......+|...|++++|+|+++.+++++.|++|++||+...
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 459999999965 899999999999999986422211 12233589999999999999999999999999999999822
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
.+...+.+|. ..|.+++|+|++++|++++.| |+|++||++......+..|...
T Consensus 98 -------------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~D-~~i~vwd~~~~~~~~~~~h~~~ 150 (319)
T 3frx_A 98 -------------------------ETYQRFVGHK-SDVMSVDIDKKASMIISGSRD-KTIKVWTIKGQCLATLLGHNDW 150 (319)
T ss_dssp -------------------------EEEEEEECCS-SCEEEEEECTTSCEEEEEETT-SCEEEEETTSCEEEEECCCSSC
T ss_pred -------------------------CeeEEEccCC-CcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeEEEEeccCCc
Confidence 3456677886 899999999999999999999 7999999987666677788999
Q ss_pred eeEEEEcCC------CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 257 LSILKWSPT------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 257 v~~~~~sp~------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|.+++|+|. +..|++++.|+.|++||+++.+. ..+.+|...|.+++|+|++++|++++. ++ .+++|+..
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg---~i~iwd~~ 226 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK-DG---EIMLWNLA 226 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET-TC---EEEEEETT
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC-CC---eEEEEECC
Confidence 999999985 44899999999999999998776 556789999999999999999997743 34 44455432
Q ss_pred CCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee----eeCCCCC
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF----IRGPGDN 405 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~ 405 (445)
..+.+..+..+..|.+++|+|++.+|++++. ..+++|+++.+..... .... ...|...
T Consensus 227 ----------~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-------~~i~v~~~~~~~~~~~-~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 227 ----------AKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-------TGIKVFSLDPQYLVDD-LRPEFAGYSKAAEPH 288 (319)
T ss_dssp ----------TTEEEEEEECCSCEEEEEECSSSSEEEEEET-------TEEEEEEETTEEEEEE-ECCCCTTCCGGGCCC
T ss_pred ----------CCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-------CCcEEEEeCcCeeeec-cCccccccccCcCcc
Confidence 3344555666668999999999999998875 4599999987554321 1111 1234567
Q ss_pred CCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 406 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 406 v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.+++|+|||++ |+.|..+|.|.+|++.
T Consensus 289 v~~~~~spdg~~-----l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 289 AVSLAWSADGQT-----LFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECTTSSE-----EEEEETTSCEEEEEEE
T ss_pred eeEEEECCCCCE-----EEEeecCceEEEEEEe
Confidence 889999999885 7888899999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=301.39 Aligned_cols=290 Identities=14% Similarity=0.182 Sum_probs=226.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.|++|+|||+. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++......
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~--~~~~~~~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNAL--TSQKTHAI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETT--TTEEEEEE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCccceEE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 469999999999999999999999999985 35555555 479999999999999999999999999999998743211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCceeee------c
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIR------R 252 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~------~ 252 (445)
.. .......+.+|. ..|.++.|+|+ +..|++++.| |+|++||+.+++..... .
T Consensus 144 ~~------------------~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~s~s~D-~~i~~wd~~~~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 144 DG------------------NMPVSRVLTGHK-GYASSCQYVPDQETRLITGSGD-QTCVLWDVTTGQRISIFGSEFPSG 203 (380)
T ss_dssp CC------------------SSTTCCBCCCCS-SCCCCCBCCSSSSSCEEEECTT-SCEEEECTTTCCEEEEECCCSSSS
T ss_pred cC------------------CccceeeccCCC-cceEEEEEecCCCCEEEEECCC-CcEEEEEcCCCcEEEEeecccCCC
Confidence 10 001223466775 78999999996 4569999999 79999999998775443 4
Q ss_pred CCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCC-Cc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|...|.+++|++ ++++|++|+.|++|++||++.. +. ..+.+|...|++++|+|++++|++++ .++.+..|++ .
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~lwd~---~ 279 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRLFDM---R 279 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEEEET---T
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEEEEC---C
Confidence 678899999987 7899999999999999999843 33 56778999999999999999998763 3444444443 2
Q ss_pred CCccccccCcccccccccc-------CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 330 PSLDAHLLPVDLPDIVSLT-------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~-------~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
. ...+..+. .+. .|++++|+|+|++|++|+.| |.|++||+..++... .......+
T Consensus 280 ~----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~-~~~~~~~~ 342 (380)
T 3iz6_a 280 T----------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDTLLAEMVL-NLGTLQNS 342 (380)
T ss_dssp T----------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEETTTCCEEE-EECCSCSS
T ss_pred C----------CcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEECCCCceEE-EEecccCC
Confidence 1 11222221 122 48999999999999999887 899999998877652 22222357
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|...|++++|+|||++ |+.|..+|.|.+|++.
T Consensus 343 h~~~v~~l~~s~dg~~-----l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 343 HEGRISCLGLSSDGSA-----LCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCCCCCEEEECSSSSE-----EEEECTTSCEEEEECC
T ss_pred CCCceEEEEECCCCCE-----EEEeeCCCCEEEEecC
Confidence 9999999999999875 7888889999999875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=312.66 Aligned_cols=332 Identities=14% Similarity=0.167 Sum_probs=242.1
Q ss_pred ccccccccccccccccCCCcC-Cc------------------------CcCCeeEEEEccCCCEEEEEECCCeEEEEEcc
Q 013338 75 STLHGIISHSIKPLLHPDHVH-LL------------------------PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYE 129 (445)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~-~~------------------------~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~ 129 (445)
..+.||...+....+.|..+. +. +...|++++|+|+|++||+++.|++|+||++.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 346777777666666665442 11 22369999999999999999999999999985
Q ss_pred CCCCcceeEEec------CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc--c--------ccc
Q 013338 130 DSEGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF--L--------GAL 193 (445)
Q Consensus 130 ~~~~~~~~~~~~------~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~--------~~~ 193 (445)
+++....+.. +|.+.|++++|+|++..|++++.|++|++||+........+....... . .-+
T Consensus 221 --~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 221 --DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp --TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred --CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 3555554422 699999999999999999999999999999998554333322110000 0 000
Q ss_pred cCCCCCce--------EEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--------------
Q 013338 194 SRGPGTRW--------TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-------------- 251 (445)
Q Consensus 194 ~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-------------- 251 (445)
+...++.. .+...+.+|. ..|++++|+|+|++|++++.| |+|++||+.+++.....
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~-~~v~~l~~spdg~~l~s~s~D-~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHN-KAITALSSSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCC-CCEEEEEEeCCCCEEEEEeCC-CcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 00111111 1345667886 899999999999999999999 79999998765432110
Q ss_pred ---------------------------------------------------------------------cCCCCeeEEEE
Q 013338 252 ---------------------------------------------------------------------RGFGGLSILKW 262 (445)
Q Consensus 252 ---------------------------------------------------------------------~~~~~v~~~~~ 262 (445)
.+...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 01234678999
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+|+|++|++|+.|++|++||+.+++.. ....|...|++++|+|+|++|+++. .+..+..|++...
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s-~d~~v~~w~~~~~------------ 523 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANN------------ 523 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGT------------
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc-CCCCEEEEEcCCC------------
Confidence 999999999999999999999876542 2257889999999999999999764 4455555554320
Q ss_pred ccccc--cccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCceeEeecCC
Q 013338 341 LPDIV--SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDK 416 (445)
Q Consensus 341 ~~~~~--~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~v~~spdg~ 416 (445)
.+.+. .+..|. .|.+++|+|||++||+++.| ++|++||++++.... ...+.+| ...|++++|+|+++
T Consensus 524 ~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D------~~v~lW~~~~~~~~~---~~~~~~h~~~~v~~v~fs~d~~ 594 (611)
T 1nr0_A 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHP---IIIKGAHAMSSVNSVIWLNETT 594 (611)
T ss_dssp TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCC---EEETTSSTTSCEEEEEEEETTE
T ss_pred CceeeeeeeeecccceeEEEECCCCCEEEEEECC------CcEEEEECCCccccc---chhhccCcccCeeEEEEcCCCE
Confidence 12222 234477 89999999999999999998 999999998754221 1345688 88999999999974
Q ss_pred CCCCCeEEEEecCeeeEeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|+.+..+|.|.+|++-
T Consensus 595 ------l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 595 ------IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ------EEEEETTSCEEEEECC
T ss_pred ------EEEecCCCCEEEEecc
Confidence 5567789999999874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=289.07 Aligned_cols=287 Identities=15% Similarity=0.184 Sum_probs=220.1
Q ss_pred CCeeEEEE-----cc-CCCEEEEEECCCeEEEEEccCCCCc----ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 100 VDLQGVSW-----HQ-HKHIVAFISGSTQVIVRDYEDSEGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 100 ~~v~~~~~-----sp-~g~~la~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
..|++++| ++ ++++||+|+.|++|+||++...... .......+|...|++++|+|++..+++++.|++|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 45999999 76 9999999999999999998643211 11223358999999999999988889999999999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
+||+... .+...+.+|. ..|.+++|+|++++|++++.| |+|++||+.......
T Consensus 102 lwd~~~~-------------------------~~~~~~~~h~-~~v~~v~~sp~~~~l~s~~~d-~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 102 LWDLRTG-------------------------TTYKRFVGHQ-SEVYSVAFSPDNRQILSAGAE-REIKLWNILGECKFS 154 (343)
T ss_dssp EEETTSS-------------------------CEEEEEECCC-SCEEEEEECSSTTEEEEEETT-SCEEEEESSSCEEEE
T ss_pred EEECCCC-------------------------cEEEEEcCCC-CcEEEEEECCCCCEEEEEcCC-CEEEEEeccCCceee
Confidence 9999732 2445577785 899999999999999999999 799999998543333
Q ss_pred ee---cCCCCeeEEEEcCCC----------CEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 250 IR---RGFGGLSILKWSPTG----------DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 250 ~~---~~~~~v~~~~~sp~g----------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.. .|...|.+++|+|++ .+|++++.|+.|++||........+..|...|.+++|+|++++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 33 567889999999987 7899999999999999654434567789999999999999999997743
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
++.+..|++.. .......+.....|.+++|+|++++++++ .| +.|++||+.+++......+
T Consensus 234 dg~v~iwd~~~------------~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d------~~v~iw~~~~~~~~~~~~~ 294 (343)
T 2xzm_R 234 DKKLLIWDILN------------LTYPQREFDAGSTINQIAFNPKLQWVAVG-TD------QGVKIFNLMTQSKAPVCTI 294 (343)
T ss_dssp TCEEEEEESSC------------CSSCSEEEECSSCEEEEEECSSSCEEEEE-ES------SCEEEEESSSCCSCSEEEC
T ss_pred CCeEEEEECCC------------CcccceeecCCCcEEEEEECCCCCEEEEE-CC------CCEEEEEeCCCCCCceEEe
Confidence 34444444321 11122223222379999999999988765 45 6799999987654321111
Q ss_pred e--------eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 397 G--------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 397 ~--------~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
. ...+|...|++++|+|+|++ |+.|..+|.|.+|++.
T Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 295 EAEPITKAEGQKGKNPQCTSLAWNALGKK-----LFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CCCSGGGBTTBCCSCCCEEEEEECSSSCC-----EEEEETTSEEEEEEEE
T ss_pred ecCcchhhhhhcCCCCceEEEEECCCCCe-----EEEecCCceEEEEEEE
Confidence 1 12268888999999999885 7888899999999875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=283.68 Aligned_cols=279 Identities=16% Similarity=0.244 Sum_probs=225.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++||+++.|+.|+||++. +++....+ .+|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--- 97 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTI-SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--- 97 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCC--Ccccchhh-ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---
Confidence 459999999999999999999999999985 35555544 579999999999999989999999999999999732
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.+...+.+|. ..|.+++|+|++++|++++.| |.|++||+++++... +..|...|.
T Consensus 98 ----------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~v~ 153 (312)
T 4ery_A 98 ----------------------KCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFD-ESVRIWDVKTGKCLKTLPAHSDPVS 153 (312)
T ss_dssp ----------------------CEEEEEECCS-SCEEEEEECSSSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ----------------------cEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCEEEEEecCCCCcEE
Confidence 2445567775 799999999999999999999 799999999887654 456788999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
+++|+|++++|++++.|+.|++||+++++.. . ...+...+..++|+|++++|++++. ++.+..|++.
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~---------- 222 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYS---------- 222 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET-TTEEEEEETT----------
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECC----------
Confidence 9999999999999999999999999988763 2 3356678999999999999997643 3445554432
Q ss_pred cCccccccccccCCC-c---cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 337 LPVDLPDIVSLTGSQ-G---IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~---v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
..+.+..+.+|. . +......+++++|++++.| +.|++||+.+++++ ..+.+|...|.+++|+
T Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 223 ---KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED------NLVYIWNLQTKEIV-----QKLQGHTDVVISTACH 288 (312)
T ss_dssp ---TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT------SCEEEEETTTCCEE-----EEECCCSSCEEEEEEC
T ss_pred ---CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC------CEEEEEECCCchhh-----hhhhccCCcEEEEeec
Confidence 334455566655 2 2233344788999999887 99999999987665 4778999999999999
Q ss_pred ecCCCCCCCeEEEE-e-cCeeeEeeeee
Q 013338 413 FHDKFKQGPLLSVC-W-SSGFCCTYPLI 438 (445)
Q Consensus 413 pdg~~~~~~~l~~~-~-~~G~v~~~~~~ 438 (445)
|++++ ++.+ + ++|.|.+|...
T Consensus 289 p~~~~-----l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 PTENI-----IASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSSE-----EEEEECTTTCCEEEEECC
T ss_pred CcCCc-----eEEEEccCCccEEEecCC
Confidence 99875 4444 3 68999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=289.90 Aligned_cols=298 Identities=15% Similarity=0.181 Sum_probs=234.2
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-----------------CCCCCeeEEEECcCCCcEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----------------DSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~spd~~~l~ 160 (445)
+...|.+++|+|||++||+|+ ++.++||++. +++.+..+.. .+...|++++|+|+++.++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETT--TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEec--CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 456799999999999999876 7899999985 3554444321 1122499999999999999
Q ss_pred EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 161 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
+++.|+.|++||+... .+...+.+|. ..|.+++|+|++++|++++.| |+|++|
T Consensus 140 s~~~d~~i~iwd~~~~-------------------------~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-~~v~iw 192 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR-------------------------KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD-RTVRIW 192 (393)
T ss_dssp EEETTSCEEEEETTTT-------------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEEEEE
T ss_pred EEcCCCeEEEEECCCC-------------------------cEEEEEccCC-CCEEEEEEcCCCCEEEEecCC-CcEEEE
Confidence 9999999999998722 3455677886 899999999999999999999 799999
Q ss_pred EccCCCceeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc-cc-------cCCCCCeeEEEECCCCCeEE
Q 013338 241 DVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-PW-------SSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 241 d~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~-~~-------~~~~~~v~~~~~sp~~~~l~ 311 (445)
|+++++......+...+.+++|+| ++++|++++.|+.|++||+++++.. .+ ..|...|.+++|+|++++|+
T Consensus 193 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 193 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred ECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 999988777777788999999999 8999999999999999999988752 22 46888999999999999998
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+++ .++.+..|++......... ...........+.+|. .|.+++|+|++++|++++.| +.|++||+.+++.
T Consensus 273 s~s-~d~~v~~wd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D------~~v~iwd~~~~~~ 344 (393)
T 1erj_A 273 SGS-LDRSVKLWNLQNANNKSDS-KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------RGVLFWDKKSGNP 344 (393)
T ss_dssp EEE-TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------SEEEEEETTTCCE
T ss_pred EEe-CCCEEEEEECCCCCCcccc-cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC------CeEEEEECCCCeE
Confidence 764 3455555554322110000 0011223445677888 89999999999999999988 9999999998765
Q ss_pred eeeeeeeeeeCCCCCCCceeEeecCCCC-CCCeEEEEecCeeeEeeeee
Q 013338 391 ISLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~v~~spdg~~~-~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ ..+.+|...|.+++|+|+..+. .+.+++.|-.+|.|.+|++.
T Consensus 345 ~-----~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 345 L-----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp E-----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred E-----EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 4 4678999999999999876542 35678888899999999875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=282.87 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=216.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC-CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|+ +||+|+.|++|+||++..........+..+ |...|++++|+|++..|++++.|+.|++|++.....
T Consensus 15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD 92 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence 45999999998 999999999999999964333334444234 999999999999988889999999999999862211
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-C---c-eeeecC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L---G-TPIRRG 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~---~-~~~~~~ 253 (445)
. .....+...+.+|. ..|.+++|+|++++|++++.| |+|++||++.. . . ..+..|
T Consensus 93 ~------------------~~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D-~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 93 R------------------TFEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRD-KSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp --------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-SCEEEEECCTTCCCCEEEEEECCC
T ss_pred c------------------cccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCC-CEEEEEeccCCCCCeEEEEEeccC
Confidence 0 00224566788886 899999999999999999999 79999999532 2 2 235568
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC--c-ccccCCCCCeeEEEECCC--CCeEEEEEcCCceEEEEEeccC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
...|.+++|+|++++|++++.|++|++||..++. + ..+.+|...|.+++|+|+ +..|++++ .++.+..|++...
T Consensus 153 ~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~ 231 (330)
T 2hes_X 153 SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDSTVRVWKYMGD 231 (330)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTSCEEEEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCCeEEEEEecCC
Confidence 8999999999999999999999999999988763 2 566789999999999998 56677553 4556666665322
Q ss_pred CCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC-C
Q 013338 329 PPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-N 405 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~ 405 (445)
.... .........+.. |. .|.+++|++++ +|++++.| +.|++||..+++... ......+|.. .
T Consensus 232 ~~~~-----~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~d------g~v~iw~~~~~~~~~--~~~~~~~h~~~~ 297 (330)
T 2hes_X 232 DEDD-----QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD------GVLAVYEEVDGEWKV--FAKRALCHGVYE 297 (330)
T ss_dssp CTTS-----CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETT------SCEEEEEEETTEEEE--EEEESCTTTTSC
T ss_pred Cccc-----cceeEEeeecccccccceEEEEEcCCC-EEEEEeCC------CEEEEEEcCCCceEE--Eeccccccccce
Confidence 1000 001122334444 66 89999999765 78899888 999999998764211 1123357876 8
Q ss_pred CCceeEee--cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 406 PKPVAFSF--HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 406 v~~v~~sp--dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|++++|+| +++ +|+.|-.+|.|.+|++.
T Consensus 298 v~~v~~~~~~~~~-----~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 298 INVVKWLELNGKT-----ILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEEEEEC-----C-----CEEEEETTSEEEEEEC-
T ss_pred EEEEEEecCCCce-----EEEEecCCCcEEEEEec
Confidence 99999999 555 47888899999999874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=306.83 Aligned_cols=297 Identities=18% Similarity=0.294 Sum_probs=235.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.+++|+.+ ++....+ .+|...|.+++|+|++..+++++.|+.|++|+.... ..
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~ 337 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN---GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HL 337 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT---SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC---CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ee
Confidence 368999999999999999999999999963 4444444 579999999999999988999999999999997632 22
Q ss_pred cccccccccccccccCCCC----------CceE-------EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 180 ASVRSGAASFLGALSRGPG----------TRWT-------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~----------~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
..+ .+....+..++..++ +... ++..+.+|. ..|.+++|+|++++|++++.| |.|++||.
T Consensus 338 ~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d-~~v~~~~~ 414 (577)
T 2ymu_A 338 QTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDD-KTVKLWNR 414 (577)
T ss_dssp EEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS-SCEEEEEECTTSSCEEEEETT-SEEEEECT
T ss_pred EEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC-CCeEEEEECCCCCEEEEEeCC-CEEEEEeC
Confidence 111 111112222222211 1111 345566775 799999999999999999999 79999997
Q ss_pred cCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.......+..|...|++++|+|++++|++++.|+.|++||........+..|...|++++|+|++++|++++. +. .
T Consensus 415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~---~ 490 (577)
T 2ymu_A 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DK---T 490 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TS---E
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CC---E
Confidence 6554566778899999999999999999999999999999866555777899999999999999999997743 33 4
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG 401 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~ 401 (445)
+++|+. +.+.+..+.+|. .|++++|+|||++|++++.| +.|++||.. ++. +..+.+
T Consensus 491 i~iw~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~v~lwd~~-~~~-----~~~~~~ 547 (577)
T 2ymu_A 491 VKLWNR-----------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD------KTVKLWNRN-GQL-----LQTLTG 547 (577)
T ss_dssp EEEEET-----------TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT------SEEEEECTT-SCE-----EEEEEC
T ss_pred EEEEcC-----------CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc------CEEEEEeCC-CCE-----EEEEcC
Confidence 445542 456677888898 89999999999999999988 999999964 443 347889
Q ss_pred CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 402 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 402 ~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|...|++++|+|||++ |+.+-.||.|.+|+
T Consensus 548 h~~~v~~~~fs~dg~~-----l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 HSSSVWGVAFSPDGQT-----IASASSDKTVKLWN 577 (577)
T ss_dssp CSSCEEEEEECTTSSC-----EEEEETTSCEEEEC
T ss_pred CCCCEEEEEEcCCCCE-----EEEEeCCCEEEEeC
Confidence 9999999999999986 55566799999885
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=278.76 Aligned_cols=283 Identities=16% Similarity=0.215 Sum_probs=230.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEE-ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~-~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|.+++|+|++++|++++ |+.|++|++........ ..+ ..+|...|.+++|+|+++.+++++.|+.|++|++...
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 45699999999999999998 99999999975332222 222 1268899999999999888999999999999999833
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
. ......+..|. ..+.+++|+|++++|++++.+ |.|++||+++++... +..|..
T Consensus 130 ~-----------------------~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-g~v~~~d~~~~~~~~~~~~~~~ 184 (337)
T 1gxr_A 130 T-----------------------PRIKAELTSSA-PACYALAISPDSKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp -------------------------EEEEEEECSS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred C-----------------------cceeeecccCC-CceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceeeeeecccC
Confidence 2 12344456664 789999999999999999999 799999999887654 445788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++++++++.. ++.+..|++.
T Consensus 185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~--------- 254 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVN--------- 254 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETT---------
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC-CCcEEEEECC---------
Confidence 999999999999999999999999999999887655667888999999999999997753 3445555542
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
......+..|. .|.+++|+|++++|++++.| +.|++||+.+++.. ....|...|.+++|+|+
T Consensus 255 -----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~~~~------~~~~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 255 -----KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASI------FQSKESSSVLSCDISVD 317 (337)
T ss_dssp -----SSCEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE------EEEECSSCEEEEEECTT
T ss_pred -----CCCeEEEcCCccceeEEEECCCCCEEEEecCC------CcEEEEECCCCeEE------EEecCCCcEEEEEECCC
Confidence 12233455666 89999999999999999988 99999999987765 23357888999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+++ ++++..+|.|.+|++++
T Consensus 318 ~~~-----l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 318 DKY-----IVTGSGDKKATVYEVIY 337 (337)
T ss_dssp SCE-----EEEEETTSCEEEEEEEC
T ss_pred CCE-----EEEecCCCeEEEEEEeC
Confidence 874 78888999999999875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=302.36 Aligned_cols=298 Identities=18% Similarity=0.278 Sum_probs=233.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|||||++||+|+.|+.|+|||. +++.+..+ .+|...|++++|+||++.|++++.|+.|+|||+. ....
T Consensus 17 ~~V~~~a~spdg~~las~~~d~~v~iWd~---~~~~~~~l-~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 17 SSVRGVAFSPDGQTIASASDDKTVKLWNR---NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT---TSCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEEC---CCCEEEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEE
Confidence 45999999999999999999999999995 46666655 5899999999999999999999999999999965 2221
Q ss_pred cccccccccccccccCCCCCceE---------------------------------------------------------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWT--------------------------------------------------------- 202 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 202 (445)
.. ..++...+..+++.+++.+.
T Consensus 92 ~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (577)
T 2ymu_A 92 QT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 170 (577)
T ss_dssp EE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EE-EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccce
Confidence 11 11222222222211111100
Q ss_pred -EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 203 -LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 203 -~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
.......+ ...|.++.|+|++++|++++.| |.|++||........+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 171 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w 248 (577)
T 2ymu_A 171 QLLQTLTGH-SSSVWGVAFSPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 248 (577)
T ss_dssp CEEEEEECC-SSCEEEEEECTTSSCEEEEETT-SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeeeccCC-CcceeeeeecCCCCEEEEEcCC-CEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 11222334 3688999999999999999999 79999997655556677889999999999999999999999999999
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA 360 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 360 (445)
|........+..|...|++++|+|+++.++++.. +..+. +|+. ..+.+..+.+|. .|.+++|+|
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~---~w~~-----------~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 249 NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVK---LWNR-----------NGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp CTTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEE---EEET-----------TSCEEEEECCCSSCEEEEEECT
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCEEE---EEeC-----------CCcEEEEEecCCCCeEEEEECC
Confidence 9876555777889999999999999999997744 34444 4432 445566778888 899999999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++++|++++.| +.|++||+...++ ..+.+|...|.+++|+|+|++ ++.+..+|.|.+|+.
T Consensus 314 ~~~~l~t~~~d------~~i~~w~~~~~~~------~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 314 DGQTIASASDD------KTVKLWNRNGQHL------QTLTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWNR 373 (577)
T ss_dssp TSSEEEEEETT------SCEEEEETTSCEE------EEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCee------EEEeCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEcC
Confidence 99999999988 8999999876443 356789999999999999874 788889999998874
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=305.12 Aligned_cols=286 Identities=13% Similarity=0.187 Sum_probs=225.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...+.+++|+|||++||+++ ++.++||++. +++....+ .+|...|++++|+|+|+++++++.|++|+|||+.....
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~--~~~~~~~~-~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVG--SLTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETT--CSSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred cCceeEEeeCCCCCEEEeCC-CCEEEEecCC--CcccCeEe-cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 34578899999999999987 5699999985 34444544 58999999999999998999999999999999863221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---CeEEEEEccCCCceeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---g~v~vwd~~~~~~~~~~~~~~ 255 (445)
.+...+.+|. ..|.+++|+|++++|++++.++ +.|++||... ....+..|..
T Consensus 94 -----------------------~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~ 148 (611)
T 1nr0_A 94 -----------------------ILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQAR 148 (611)
T ss_dssp -----------------------CEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSS
T ss_pred -----------------------eeeEeecccC-CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCC
Confidence 1233466775 8999999999999999988652 3788888432 2344667889
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 256 GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 256 ~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
.|.+++|+|++. .|++++.|++|++||..+++. ..+.+|...|++++|+|++++|++++. ++.+..|++.
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~-D~~i~lwd~~------- 220 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGV------- 220 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT-------
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC-CCcEEEEECC-------
Confidence 999999999987 599999999999999988766 567789999999999999999997743 4445544432
Q ss_pred ccccCccccccccc-------cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeee-----------
Q 013338 334 AHLLPVDLPDIVSL-------TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS----------- 394 (445)
Q Consensus 334 ~~~~~~~~~~~~~~-------~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~----------- 394 (445)
+.+.+..+ .+|. .|.+++|+|+|++|++++.| ++|++||+.+++.....
T Consensus 221 ------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 221 ------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ------CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeE
Confidence 22222222 2677 89999999999999999988 99999999887654211
Q ss_pred ---------------------------eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 395 ---------------------------LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 395 ---------------------------~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+...+.+|...|++++|+|||++ |+.+..+|.|.+|++.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-----l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-----LFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETT
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-----EEEEeCCCcEEEEECC
Confidence 22345689999999999999875 7777789999999863
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=287.03 Aligned_cols=292 Identities=12% Similarity=0.069 Sum_probs=213.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCC-------eEEEEEccCCCCcce-------eEEecCCCCCeeEEEECcCCCcEEEEe-
Q 013338 99 EVDLQGVSWHQHKHIVAFISGST-------QVIVRDYEDSEGKDA-------CILTSDSQRDVKVLEWRPNGGRSLSVG- 163 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~-------~i~iw~~~~~~~~~~-------~~~~~~~~~~v~~l~~spd~~~l~~~~- 163 (445)
+++|++++|+|||++||+|+.+. .|+||+++....... .....+|...|.+++++++ .++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~--~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG--IILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT--EEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC--EEEEEEC
Confidence 56899999999999999987543 599999875433211 1122467888888877643 555543
Q ss_pred ----------cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEe--ecccCCCceeEEEECCCCCeEEEEE
Q 013338 164 ----------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASAS 231 (445)
Q Consensus 164 ----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~ 231 (445)
.|+.+++|++........... .... ...+ ...+.+++|||||+++++++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~~~-~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLT------------------SVDFDASTNA-DDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEE------------------EECSSCCCCT-TCCEEEEEECTTSSCEEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEee------------------eeceeecCCc-ccCEEEEEEcCCCCEEEEEE
Confidence 357788998764332111100 0000 1112 24688999999999987654
Q ss_pred --ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCC
Q 013338 232 --YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPE 306 (445)
Q Consensus 232 --~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~ 306 (445)
.| ++|++||+.+++......|...|.+++|+|+|++|++++.+ .+.+|+..+++. .....|...+.+++|+|+
T Consensus 153 ~~~d-~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 153 SKVP-AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp SCSS-CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred CCCC-CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence 56 79999999999887777888999999999999999999855 566777666665 234567888999999999
Q ss_pred CCeEEEEEcCCc---eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEE
Q 013338 307 GRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 307 ~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~v 382 (445)
+++++++..... .+..|++.... ........+.+|. .|++++|+|||++||+|+.| ++|+|
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~i 295 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGN---------TSVLRSKQVTNRFKGITSMDVDMKGELAVLASND------NSIAL 295 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTE---------EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT------SCEEE
T ss_pred CCEEEEEecCCcceeEEeecccccce---------ecceeeeeecCCCCCeEeEEECCCCCceEEEcCC------CEEEE
Confidence 999998765443 33344432210 0112234566777 89999999999999999998 99999
Q ss_pred EEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 383 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
||+++++.+. ..+.+|...|++|+|||||++ |+.|..||.|.+|++
T Consensus 296 wd~~~~~~~~----~~~~gH~~~V~~v~fSpdg~~-----laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 296 VKLKDLSMSK----IFKQAHSFAITEVTISPDSTY-----VASVSAANTIHIIKL 341 (365)
T ss_dssp EETTTTEEEE----EETTSSSSCEEEEEECTTSCE-----EEEEETTSEEEEEEC
T ss_pred EECCCCcEEE----EecCcccCCEEEEEECCCCCE-----EEEEeCCCeEEEEEc
Confidence 9999877652 234689999999999999885 788889999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=271.61 Aligned_cols=243 Identities=15% Similarity=0.192 Sum_probs=189.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|++ .|++|+.||+|+|||++....... .....+|.+.|++++|+|+++.|++++.|+.|++||+...
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-- 159 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-- 159 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--
T ss_pred CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--
Confidence 469999999996 577899999999999965322221 1223479999999999999999999999999999999822
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCceeee---cCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIR---RGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~ 254 (445)
.++..+.+|. ..|.+++|+|++. +|++++.| |+|++||+++++..... .+.
T Consensus 160 -----------------------~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~ 214 (344)
T 4gqb_B 160 -----------------------VVLSSYRAHA-AQVTCVAASPHKDSVFLSCSED-NRILLWDTRCPKPASQIGCSAPG 214 (344)
T ss_dssp -----------------------EEEEEECCCS-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTSSSCEEECC----C
T ss_pred -----------------------cEEEEEcCcC-CceEEEEecCCCCCceeeeccc-cccccccccccceeeeeecceee
Confidence 4667788886 8999999999885 67888888 79999999998775543 345
Q ss_pred CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC-eEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.+++|+|+ +++|++|+.|++|++||+++++. ..+..|...|++++|+|++. +|+++ +.++. +++|+.
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg-s~D~~---i~vwd~--- 287 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL-SEDCS---LAVLDS--- 287 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE-ETTSC---EEEECT---
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE-eCCCe---EEEEEC---
Confidence 67899999995 66889999999999999999887 56778999999999999985 56655 34444 445543
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
....+..+.+|. .|++++|+|+++ +|++++.| ++|++|++.+..+.
T Consensus 288 --------~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D------~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 288 --------SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD------HQVVHHVVPTEPLP 335 (344)
T ss_dssp --------TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECCC----
T ss_pred --------CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC------CeEEEEECCCCCCC
Confidence 222344567888 899999999986 56688887 99999999875443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=271.96 Aligned_cols=285 Identities=13% Similarity=0.131 Sum_probs=226.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++|++++.|+.|+||++. +++....+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-- 107 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSL--NGERLGTL-DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ-- 107 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETT--TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCC--Cchhhhhh-hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 459999999999999999999999999985 45555555 5799999999999998899999999999999998332
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec----CCeEEEEEccCCCc--------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----SSSFTIWDVAQGLG-------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~g~v~vwd~~~~~~-------- 247 (445)
+...+. + ...+.+++|+|+++++++++.+ .|.|++||+..+..
T Consensus 108 -----------------------~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 108 -----------------------CVATWK-S-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp -----------------------EEEEEE-C-SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred -----------------------EEEEee-c-CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 223333 3 3789999999999999998876 14999999987632
Q ss_pred ----eeeecCCC--CeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 248 ----TPIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 248 ----~~~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
..+..+.. .+.+++|+|++++|++++.||.|++||+++ .+. ..+..|...|.+++|+|++++|++++. ++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~ 241 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR-DTN 241 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-TSE
T ss_pred cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-Cce
Confidence 22333444 899999999999999999999999999998 444 556678899999999999999987743 344
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcc--------cceEEEEEEccCCCee
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI--------YKGLIAIYDARRTPLI 391 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~--------~d~~i~vwd~~~~~~~ 391 (445)
+..|++. ....+..+.....+..++|+|+++++++++.++... -...+++||+.+++.+
T Consensus 242 i~v~d~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 242 SFLVDVS-------------TLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp EEEEETT-------------TCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred EEEEECC-------------CCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 5555442 334445555444899999999999999998762100 0018999999987665
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..+.+|...|++++|+|+|++ |+.+..+|.|.+|++.
T Consensus 309 -----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 309 -----GRVQGHFGPLNTVAISPQGTS-----YASGGEDGFIRLHHFE 345 (369)
T ss_dssp -----EEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEEEC
T ss_pred -----hheecccCcEEEEEECCCCCE-----EEEEcCCCeEEEEECc
Confidence 467889999999999999874 7888899999999875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=269.13 Aligned_cols=296 Identities=13% Similarity=0.175 Sum_probs=228.2
Q ss_pred cccccccccccccccccccCCCcCCcCcCCeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCc--ceeEEecCCCCCee
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVK 148 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~ 148 (445)
.+..+|+||. ..|++++|+|+ +++||+|+.|++|+||++...... .......+|...|.
T Consensus 29 ~l~~tL~GH~------------------~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 29 TLRGTLKGHN------------------GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90 (340)
T ss_dssp EEEEEECCCS------------------SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred EEEEEECCcc------------------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE
Confidence 4556788885 45999999998 689999999999999999653322 12223368999999
Q ss_pred EEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE
Q 013338 149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 228 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 228 (445)
+++|+|++..+++++.|+.|++|+.... ........+. ..+..+.+++++++|+
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~-------------------------~~~~~~~~~~-~~~~~~~~~~~~~~l~ 144 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTG-------------------------TTTRRFVGHT-KDVLSVAFSSDNRQIV 144 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEECTTSSCEE
T ss_pred EEEECCCCCEEEEEcccccceEEeeccc-------------------------ceeeeecCCC-CceeEEEEeecCccce
Confidence 9999999999999999999999998722 1222333343 6888999999999999
Q ss_pred EEEecCCeEEEEEccCCCcee--eecCCCCeeEEEEcCCC--CEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEE
Q 013338 229 SASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW 303 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~--~~~~~~~v~~~~~sp~g--~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~ 303 (445)
+++.| |.+++||+....... ...|...+..++|++++ .++++++.|+.|++||+++++. ..+..|...|++++|
T Consensus 145 s~s~d-~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 223 (340)
T 4aow_A 145 SGSRD-KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223 (340)
T ss_dssp EEETT-SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred eecCC-CeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE
Confidence 99999 799999988665433 34567899999999874 5688999999999999999887 566789999999999
Q ss_pred CCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 304 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 304 sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+|++++|++++. ++. +++|+.. ....+..+..+..+..++|+|++.+++ ++.| +.|++|
T Consensus 224 s~~~~~l~s~s~-Dg~---i~iwd~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d------~~i~iw 282 (340)
T 4aow_A 224 SPDGSLCASGGK-DGQ---AMLWDLN----------EGKHLYTLDGGDIINALCFSPNRYWLC-AATG------PSIKIW 282 (340)
T ss_dssp CTTSSEEEEEET-TCE---EEEEETT----------TTEEEEEEECSSCEEEEEECSSSSEEE-EEET------TEEEEE
T ss_pred CCCCCEEEEEeC-CCe---EEEEEec----------cCceeeeecCCceEEeeecCCCCceee-ccCC------CEEEEE
Confidence 999999997743 344 4445432 344555666666899999999987665 4556 899999
Q ss_pred EccCCCeeeee----eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 384 DARRTPLISLS----LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 384 d~~~~~~~~~~----~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|++++...... ......+|...|++++|+|||++ |+.|..+|.|.+|++.
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-----l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE-----EEEEETTSCEEEEEEE
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEeCC
Confidence 99876654221 11233478899999999999875 7788899999999875
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=274.99 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=228.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC----CcceeEEecCCCCCeeEEEECcC----C---CcEEEEecCCc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE----GKDACILTSDSQRDVKVLEWRPN----G---GRSLSVGCKGG 167 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~l~~spd----~---~~l~~~~~dg~ 167 (445)
...|++++|+| ++|++++.|+.|+||+++... ......+ .+|...|++++|+|+ + ..|++++.|+.
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 34699999999 899999999999999997532 1134444 479999999999999 8 89999999999
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC----CCceeEEEEC----CCCCe-EEEEEecCCeEE
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWG----PDGRY-LASASYESSSFT 238 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s----p~~~~-l~~~~~d~g~v~ 238 (445)
|++|++........ ..+..+..|. ...|.+++|+ |++++ |++++.| |.|+
T Consensus 93 i~iw~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-g~i~ 151 (397)
T 1sq9_A 93 LLFYRITREDETKK--------------------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-GTTY 151 (397)
T ss_dssp EEEEEEEECTTTCC--------------------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-SCEE
T ss_pred EEEEEccCCccccc--------------------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-CcEE
Confidence 99999984332111 1244455562 3789999999 99999 9999998 7999
Q ss_pred EEEccC------CCce------ee-------ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccC---C-
Q 013338 239 IWDVAQ------GLGT------PI-------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS---T- 294 (445)
Q Consensus 239 vwd~~~------~~~~------~~-------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~---~- 294 (445)
+||+.+ ++.. .+ ..|...|.+++|+|++ +|++++.|+.|++||+++++. ..+.. |
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence 999998 5443 33 2367899999999999 999999999999999998776 44555 7
Q ss_pred --CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-------------CC-ccceEEe
Q 013338 295 --SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-------------SQ-GIEKIAW 358 (445)
Q Consensus 295 --~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~v~~~~~ 358 (445)
...+.+++|+|++++|++++. +...+.+.+|+.. ..+.+..+.. |. .|.+++|
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETE----------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETT----------TCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred ccCCccceEEECCCCCEEEEEec-CCCCceEEEEECC----------CCcccceeccCcccccccccccccCCcEEEEEE
Confidence 889999999999999997743 1001667777653 3344555555 77 8999999
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee------CC---------------CCCCCceeEeecCCC
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR------GP---------------GDNPKPVAFSFHDKF 417 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~------~~---------------~~~v~~v~~spdg~~ 417 (445)
+|++++|++++.| +.|++||+++++.+ ..+. +| ...|++++|+|+|++
T Consensus 300 ~~~~~~l~~~~~d------g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~ 368 (397)
T 1sq9_A 300 NDSGETLCSAGWD------GKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368 (397)
T ss_dssp CSSSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred CCCCCEEEEEeCC------CeEEEEEcCCCcee-----EEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence 9999999999988 99999999987655 3455 66 899999999999854
Q ss_pred CC-C----CeEEEEecCeeeEeeeee
Q 013338 418 KQ-G----PLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 418 ~~-~----~~l~~~~~~G~v~~~~~~ 438 (445)
.. + .+++.+..+|.|.+|++.
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccccccceEEEecCCCcEEEEEcC
Confidence 22 2 478888899999999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=296.89 Aligned_cols=287 Identities=14% Similarity=0.185 Sum_probs=222.7
Q ss_pred cCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCc--ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+|++ ++|++|+.|++|+||++...... .......+|...|++++|+|+++.+++++.|+.|+|||+..
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 4579999999875 79999999999999998643221 11223358999999999999999999999999999999972
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee----e
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----R 251 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~----~ 251 (445)
. .+...+.+|. ..|.+++|+|++++|++++.| |+|++||+.......+ .
T Consensus 462 ~-------------------------~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D-~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 462 G-------------------------VSTRRFVGHT-KDVLSVAFSLDNRQIVSASRD-RTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp T-------------------------EEEEEEECCS-SCEEEEEECTTSSCEEEEETT-SCEEEECTTSCEEEEECSSTT
T ss_pred C-------------------------cceeEEeCCC-CCEEEEEEeCCCCEEEEEeCC-CEEEEEECCCCcceeeccCCC
Confidence 2 3455677886 899999999999999999999 7999999876544333 2
Q ss_pred cCCCCeeEEEEcCCC--CEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 RGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g--~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.|...|.+++|+|++ ..|++++.|++|++||+++++. ..+..|...|++++|+|++++|++++. ++.+..|++.
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-Dg~i~iwd~~-- 591 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-DGVVLLWDLA-- 591 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSBCEEEETT--
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC--
Confidence 467789999999986 5799999999999999999887 567789999999999999999997643 4455555542
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee----------
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF---------- 398 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~---------- 398 (445)
+.+.+..+..+..|.+++|+|++.+|++++. +.|++||+++++++.......
T Consensus 592 -----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 592 -----------EGKKLYSLEANSVIHALCFSPNRYWLCAATE-------HGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp -----------TTEEEECCBCSSCEEEEEECSSSSEEEEEET-------TEEEEEETTTTEEEEEECCCCC---------
T ss_pred -----------CCceEEEecCCCcEEEEEEcCCCcEEEEEcC-------CCEEEEECCCCCChhhhcccccccccccccc
Confidence 3334445555558999999999998887654 569999999877653211000
Q ss_pred ----eeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 399 ----IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 399 ----~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+...+++++|||||++ |+.|..+|.|.+|++.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~-----l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGST-----LFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCE-----EEEEcCCCeEEEEecc
Confidence 0011123678999999875 7888899999999874
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=271.21 Aligned_cols=287 Identities=9% Similarity=0.063 Sum_probs=223.6
Q ss_pred cCCeeEEEEccCCCEE-EEEEC---CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC---CCcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQHKHIV-AFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~l-a~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd---~~~l~~~~~dg~i~vw 171 (445)
...|.+++|+|++..+ ++++. |+.|+||++.. ++.......+|...|.+++|+|+ +..+++++.|+.|++|
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH--GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS--SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC--CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 3469999999999655 45555 99999999964 44444444468999999999998 5888889999999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE------ECCCCCeEEEEEecCCeEEEEEccCC
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS------WGPDGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~sp~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
++..... ....+.+|. ..|.++. |+|++++|++++.| |.|++||+.++
T Consensus 96 d~~~~~~------------------------~~~~~~~~~-~~v~~~~~~~~~~~s~~~~~l~~~~~d-~~i~vwd~~~~ 149 (357)
T 3i2n_A 96 NLEAPEM------------------------PVYSVKGHK-EIINAIDGIGGLGIGEGAPEIVTGSRD-GTVKVWDPRQK 149 (357)
T ss_dssp CTTSCSS------------------------CSEEECCCS-SCEEEEEEESGGGCC-CCCEEEEEETT-SCEEEECTTSC
T ss_pred eCCCCCc------------------------cEEEEEecc-cceEEEeeccccccCCCccEEEEEeCC-CeEEEEeCCCC
Confidence 9984431 123355665 7899995 57899999999999 79999999987
Q ss_pred C-c-eeeecCC----CCeeEEE----EcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECC---CCCeEEE
Q 013338 246 L-G-TPIRRGF----GGLSILK----WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP---EGRMILL 312 (445)
Q Consensus 246 ~-~-~~~~~~~----~~v~~~~----~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~ 312 (445)
. . ..+..+. ..+.+++ |+|++++|++++.|+.|++||+++++......+...+.+++|+| ++.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 6 3 3333333 3788888 78899999999999999999999988876778889999999999 8999887
Q ss_pred EEcCCceEEEEEeccCCCCccccccCcccccccc-----ccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEc
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
++ .++.+..|++.. ...+.. +.+|. .|++++|+|+++ +|++++.| |.|++||+
T Consensus 230 ~~-~dg~i~i~d~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~ 289 (357)
T 3i2n_A 230 TS-LEGKFHVFDMRT-------------QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA------GGLHLWKY 289 (357)
T ss_dssp EE-STTEEEEEEEEE-------------EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------SEEEEEEE
T ss_pred EC-CCCeEEEEeCcC-------------CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC------CcEEEeec
Confidence 64 445566665532 222222 33677 899999999998 89999888 99999999
Q ss_pred cCCCee--------------eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEE-EEecCeeeEeeeee
Q 013338 386 RRTPLI--------------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLI 438 (445)
Q Consensus 386 ~~~~~~--------------~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~-~~~~~G~v~~~~~~ 438 (445)
+.+... ....+..+.+|...|++++|+|+|++ |+ .+..+|.|.+|++.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG-----LCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT-----EEEEEETTSEEEEEEEC
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe-----EEEEecCCCcEEEEECC
Confidence 865433 12456678899999999999999886 55 57789999999986
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=282.43 Aligned_cols=289 Identities=11% Similarity=0.114 Sum_probs=213.0
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|+|++|+| ++.+||+|+.||.|+|||+...+..... ...+|.+.|++|+|+| ++..|++++.|++|++||+...
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~- 197 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN- 197 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-
Confidence 4699999999 5679999999999999999653333222 2347999999999998 5667888888999999998721
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.. ........+ ...+.+++|+|++++|++++.| |.|++||++......+..|...|
T Consensus 198 ~~----------------------~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~d-g~i~~wd~~~~~~~~~~~h~~~v 253 (435)
T 4e54_B 198 IL----------------------RVFASSDTI-NIWFCSLDVSASSRMVVTGDNV-GNVILLNMDGKELWNLRMHKKKV 253 (435)
T ss_dssp EE----------------------EEEECCSSC-SCCCCCEEEETTTTEEEEECSS-SBEEEEESSSCBCCCSBCCSSCE
T ss_pred ce----------------------eEEeccCCC-CccEEEEEECCCCCEEEEEeCC-CcEeeeccCcceeEEEecccceE
Confidence 11 011111122 2467899999999999999999 79999999877667777899999
Q ss_pred eEEEEcCCCC-EEEEEecCCeEEEEeCCCCCcc----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 258 SILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 258 ~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.+++|+|+++ +|++++.|+.|++||+++.+.. ....|...|++++|+|++++|++++ .++.+..|++..
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~----- 327 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ----- 327 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS-----
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC-----
Confidence 9999999976 6789999999999999887652 2347889999999999999999774 344555555432
Q ss_pred cccccCccccccccccCC-------CccceEEeCCCCCEEEEEEcCCCc------ccceEEEEEEccCCCeeeeeeeeee
Q 013338 333 DAHLLPVDLPDIVSLTGS-------QGIEKIAWDASGERLAVSYKGGDD------IYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-------~~v~~~~~sp~g~~l~~~s~d~~d------~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
......+..| ..+..+.|+|++.++++++.+... ..++.|++||..+++.+. ...
T Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~----~l~ 395 (435)
T 4e54_B 328 --------WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC----QLY 395 (435)
T ss_dssp --------SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE----EEC
T ss_pred --------CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE----EEe
Confidence 1111111111 134566788888888777543211 012679999999987762 223
Q ss_pred eCCCCCCCce-eEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGPGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~~~~v~~v-~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+|...|.++ +|+|+|++ |+.| +++.|.+|++.
T Consensus 396 ~~~~~~v~s~~~fspdg~~-----lasg-~d~~i~iW~~~ 429 (435)
T 4e54_B 396 DPESSGISSLNEFNPMGDT-----LASA-MGYHILIWSQQ 429 (435)
T ss_dssp CSSCCCCCCEEEECTTSSC-----EEEE-CSSEEEECCCC
T ss_pred CCCCCcEEEEEEECCCCCE-----EEEE-cCCcEEEEECC
Confidence 4688889998 69999885 6666 47899999875
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=270.11 Aligned_cols=238 Identities=17% Similarity=0.254 Sum_probs=200.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|++++.++++++.|++|+|||+. +++.+..+ ..|...+.+++|+|+++.+++++.++.|++|++.....
T Consensus 80 ~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~--~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~ 156 (321)
T 3ow8_A 80 QLGVVSVDISHTLPIAASSSLDAHIRLWDLE--NGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK 156 (321)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEECC--CCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce
Confidence 3469999999999999999999999999985 46555555 46788899999999998899999999999999983322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
...+..+. ..|.+++|+|++++|++++.| |.|++||+++++... +..|...|
T Consensus 157 -------------------------~~~~~~~~-~~v~~~~~spdg~~lasg~~d-g~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 157 -------------------------EYSLDTRG-KFILSIAYSPDGKYLASGAID-GIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp -------------------------EEEEECSS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSSCC
T ss_pred -------------------------eEEecCCC-ceEEEEEECCCCCEEEEEcCC-CeEEEEECCCCcEEEEEcccCCce
Confidence 22344453 789999999999999999999 799999999887654 45678899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++++|++++. ++.+..|++.
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~---------- 278 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVG---------- 278 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT----------
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCC----------
Confidence 9999999999999999999999999998876 567789999999999999999987643 4445555432
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+..++.++.+|. .|.+++|+|+|++|++++.| +.|++||..
T Consensus 279 ---~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d------~~i~vwd~p 320 (321)
T 3ow8_A 279 ---TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD------QEIHIYDCP 320 (321)
T ss_dssp ---TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------CCEEEEECC
T ss_pred ---CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEeCC
Confidence 455677788888 89999999999999999988 999999963
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=276.11 Aligned_cols=312 Identities=11% Similarity=0.140 Sum_probs=215.8
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCC-------cc-eeEEecCCC------------CCeeEEEECcC
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG-------KD-ACILTSDSQ------------RDVKVLEWRPN 155 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~-------~~-~~~~~~~~~------------~~v~~l~~spd 155 (445)
+.....|.+++|+|+|++||+|+.||.|+||++..... .. ......+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 34457899999999999999999999999999964221 00 122335787 88999999999
Q ss_pred C--CcEEEEecCCcEEEEccCCCCCcccccc-----cccc---ccccccCC--CCCce----EEEEee-cccCCCceeEE
Q 013338 156 G--GRSLSVGCKGGICIWAPSYPGNAASVRS-----GAAS---FLGALSRG--PGTRW----TLVDFL-RSQNGEQITAL 218 (445)
Q Consensus 156 ~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~-----~~~~---~~~~~~~~--~~~~~----~~~~~~-~~~~~~~v~~~ 218 (445)
+ ..+++++.|+.|++|++........... +... ....+... ....+ .....+ .+|. ..|.++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~ 183 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINSI 183 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEEE
Confidence 7 6789999999999999873221100000 0000 00000000 00000 112233 4564 899999
Q ss_pred EECCCCCeEEEEEecCCeEEEEEccC-CCcee--------eecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCc
Q 013338 219 SWGPDGRYLASASYESSSFTIWDVAQ-GLGTP--------IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 219 ~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~~~--------~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
+|+|++++|+++ .| |.|++||++. +.... +..|...|.+++|+|++ ++|++++.|+.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 184 SINSDYETYLSA-DD-LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EECTTSSEEEEE-CS-SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEcCCCCEEEEe-CC-CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999999999998 67 7999999984 33332 34688899999999998 9999999999999999998875
Q ss_pred -----ccccCCCC------------CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 289 -----EPWSSTSG------------FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 289 -----~~~~~~~~------------~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
..+..+.. .|.+++|+|++++|+++.. +.+..|++.. ....+..+.+|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~------------~~~~~~~~~~~~ 327 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM------------ENRPVETYQVHE 327 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC------------CSSCSCCEESCG
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC------------Cccccceeeccc
Confidence 44555554 8999999999999997744 4455554421 133445555554
Q ss_pred c----------------cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee------------------
Q 013338 352 G----------------IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG------------------ 397 (445)
Q Consensus 352 ~----------------v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~------------------ 397 (445)
. +..++|+|++++|++++.| +.|++||+.+++.+......
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN------NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST------TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccC------CEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence 2 3349999999999999888 99999999988765321100
Q ss_pred ---------eeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 398 ---------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 398 ---------~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
....+...|..++|+|+|+ +|+++.+++ +.+|.
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~-----~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKEN-----IIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSS-----EEEEECSSC-EEEEE
T ss_pred CcccccccccccccCCceeEEEECCCCC-----EEEEEecce-eeeec
Confidence 0012345788999999987 488887666 44443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=262.26 Aligned_cols=247 Identities=15% Similarity=0.249 Sum_probs=191.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|++++|+|+|++||+|+.|++|+||+++..+.+.+..+ .+|.+.|++++|+++ +..|++++.|++|++||+....
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence 4599999999999999999999999999964344444444 589999999999863 6788889999999999997321
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCC---ceeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~---~~~~~~ 252 (445)
+.....+.+|. ..|.+++|+|+ +.+|++++.| |.|++||++++. ...+..
T Consensus 89 -----------------------~~~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d-~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 89 -----------------------WSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSD-GKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp -----------------------BCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEEBCSSSCBCCEEEEC
T ss_pred -----------------------eEEEEEeecCC-CceeEEEeCcCCCCcEEEEEECC-CcEEEEEecCCCceeeeeeec
Confidence 11223355665 79999999997 8899999999 799999998763 244567
Q ss_pred CCCCeeEEEEcCC-------------CCEEEEEecCCeEEEEeCCCCC----c-ccccCCCCCeeEEEECCCC---CeEE
Q 013338 253 GFGGLSILKWSPT-------------GDYFFAAKFDGTFYLWETNTWT----S-EPWSSTSGFVTGATWDPEG---RMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp~-------------g~~l~~~~~dg~v~iwd~~~~~----~-~~~~~~~~~v~~~~~sp~~---~~l~ 311 (445)
|...|.+++|+|+ +++|++|+.|++|++||+++++ . ..+.+|...|.+++|+|++ ++|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 8899999999997 5799999999999999998765 2 3567899999999999995 6676
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
++ +.++.+..|++....... . ..+.....|. .|.+++|+|+|++||+++.| +.|+||+...
T Consensus 224 s~-s~D~~v~iWd~~~~~~~~-------~-~~~~~~~~~~~~v~~~~~s~~g~~las~~~D------~~v~lw~~~~ 285 (297)
T 2pm7_B 224 SV-SQDRTCIIWTQDNEQGPW-------K-KTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (297)
T ss_dssp EE-ETTSCEEEEEESSTTSCC-------E-EEESSSSCCSSCEEEEEECSSSCCEEEEETT------SCEEEEEECT
T ss_pred EE-ECCCcEEEEEeCCCCCcc-------c-eeeeecccCCCcEEEEEECCCCCEEEEEcCC------CcEEEEEECC
Confidence 55 445566666553211000 0 0011113445 79999999999999999988 9999999863
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=280.83 Aligned_cols=288 Identities=14% Similarity=0.202 Sum_probs=226.5
Q ss_pred CeeEEEEccCCC-EEEEE----------ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQHKH-IVAFI----------SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.|.+++|+|+|+ +||++ +.|+.|+||++....... ......|...|++++|+|++..|++++.|+.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 588999999997 99998 889999999996422111 112235889999999999998999999999999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCC--
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL-- 246 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~-- 246 (445)
+|++...... ......+.+|. ..|.+++|+|+ +++|++++.| |.|++||+.+++
T Consensus 93 vw~~~~~~~~---------------------~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 93 LYSTNEANNA---------------------INSMARFSNHS-SSVKTVKFNAKQDNVLASGGNN-GEIFIWDMNKCTES 149 (416)
T ss_dssp EECCSSTTSC---------------------CCEEEECCCSS-SCCCEEEECSSSTTBEEEECSS-SCEEBCBTTTTSSC
T ss_pred Eeeccccccc---------------------ccchhhccCCc-cceEEEEEcCCCCCEEEEEcCC-CeEEEEECCCCccc
Confidence 9999842111 11445567775 89999999998 8999999999 799999999876
Q ss_pred ----cee----eecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc-cccCC------CCCeeEEEECCCCC-e
Q 013338 247 ----GTP----IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSST------SGFVTGATWDPEGR-M 309 (445)
Q Consensus 247 ----~~~----~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~------~~~v~~~~~sp~~~-~ 309 (445)
... ...|...|.+++|+|+ +.+|++++.|+.|++||+++++.. .+..+ ...+.+++|+|++. +
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred cccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 221 2457789999999999 789999999999999999998763 33333 78899999999985 5
Q ss_pred EEEEEcCCc---eEEEEEeccCCCCccccccCcccccccccc-CCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEE
Q 013338 310 ILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 310 l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
++++ ..++ .+..|++.. ....+..+. +|. .|.+++|+| ++++|++++.| +.|++|
T Consensus 230 l~~~-~~d~~~~~i~~~d~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~w 290 (416)
T 2pm9_A 230 VATA-TGSDNDPSILIWDLRN------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLW 290 (416)
T ss_dssp EEEE-ECCSSSCCCCEEETTS------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEE
T ss_pred EEEE-ECCCCCceEEEEeCCC------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEe
Confidence 5555 3444 455555432 123455666 777 899999999 99999999988 999999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
|+++++.+ ..+.+|...|++++|+|++. .+++.+..+|.|.+|++.-.
T Consensus 291 d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~----~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 291 NPESAEQL-----SQFPARGNWCFKTKFAPEAP----DLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CSSSCCEE-----EEEECSSSCCCCEEECTTCT----TEEEECCSSSEEEEEESCCC
T ss_pred eCCCCccc-----eeecCCCCceEEEEECCCCC----CEEEEEecCCcEEEEEccCC
Confidence 99987654 46778999999999999973 25888889999999998643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=278.48 Aligned_cols=238 Identities=16% Similarity=0.295 Sum_probs=201.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++|++|+.|++|+|||+.. ++.+..+ .+|...|.+++|+|++..+++++.|+.|++||+...
T Consensus 150 ~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-- 224 (410)
T 1vyh_C 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-- 224 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC--
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--
Confidence 45799999999999999999999999999853 4444444 579999999999999999999999999999999732
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
.++..+.+|. ..|.++.|+|++++|++++.| |.|++||+.+++... +..|...|
T Consensus 225 -----------------------~~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D-~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 225 -----------------------YCVKTFTGHR-EWVRMVRPNQDGTLIASCSND-QTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp -----------------------CEEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred -----------------------cEEEEEeCCC-ccEEEEEECCCCCEEEEEcCC-CeEEEEECCCCceeeEecCCCceE
Confidence 2455677775 799999999999999999999 799999999887654 55788999
Q ss_pred eEEEEcCC--------------------CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 258 SILKWSPT--------------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 258 ~~~~~sp~--------------------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+++|+|+ +.+|++|+.|+.|++||++++++ ..+.+|...|++++|+|++++|++++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~- 358 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD- 358 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-
Confidence 99999996 67899999999999999999876 566789999999999999999997743
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+ +.+++|+.. ..+.+..+.+|. .|++++|+|++++|++|+.| ++|++|+++
T Consensus 359 D---~~i~vwd~~----------~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D------~~i~vW~~r 410 (410)
T 1vyh_C 359 D---KTLRVWDYK----------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWECR 410 (410)
T ss_dssp T---TEEEEECCT----------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC--
T ss_pred C---CeEEEEECC----------CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Confidence 3 445555432 445677788888 89999999999999999988 999999864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=275.58 Aligned_cols=287 Identities=12% Similarity=0.083 Sum_probs=209.1
Q ss_pred cCCeeEEEEccCC-CEEEEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g-~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|.+++|+|++ ++||+|+.|+.|+||++.. ++....+. .+|...|.+++|+| ++..+++++.|+.|++||+..
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV--QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG 150 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS--TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC--cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence 3569999999999 9999999999999999964 44444443 36999999999999 667788888899999999972
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
... ........+ ...|.+++|+|++++|++++.| |.|++||++......+..|..
T Consensus 151 -~~~----------------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 151 -SVI----------------------QVFAKTDSW-DYWYCCVDVSVSRQMLATGDST-GRLLLLGLDGHEIFKEKLHKA 205 (383)
T ss_dssp -CEE----------------------EEEECCCCS-SCCEEEEEEETTTTEEEEEETT-SEEEEEETTSCEEEEEECSSS
T ss_pred -Cce----------------------EEEeccCCC-CCCeEEEEECCCCCEEEEECCC-CCEEEEECCCCEEEEeccCCC
Confidence 111 111112223 3689999999999999999999 799999996555566777899
Q ss_pred CeeEEEEcCCCC-EEEEEecCCeEEEEeCCC----CCcccccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCC
Q 013338 256 GLSILKWSPTGD-YFFAAKFDGTFYLWETNT----WTSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 256 ~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
.|.+++|+|+++ +|++++.|+.|++||+++ +.......|...|.+++|+| ++++|++++. ++.+..|++....
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWS 284 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBTT
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCc
Confidence 999999999999 899999999999999998 44444447899999999999 9999987643 4455555543221
Q ss_pred CCccccccCccccccccccCCC-----------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeee
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-----------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF 398 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~ 398 (445)
.. ... ... ......|. .+..++|+|+|++ +++.| +.|++||+.+++.+ ..
T Consensus 285 ~~---~~~--~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d------~~i~iwd~~~~~~~-----~~ 345 (383)
T 3ei3_B 285 KP---DQI--IIH-PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK------RTIDIYDANSGGLV-----HQ 345 (383)
T ss_dssp SC---SEE--EEC-CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC------CCEEEEETTTCCEE-----EE
T ss_pred cc---ccc--ccc-cccccccccceEEeccCCCCceEEEecCCccc--ccCCC------CeEEEEecCCCcee-----ee
Confidence 10 000 000 00011122 2333445555554 33344 99999999987765 35
Q ss_pred eeC--CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 399 IRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 399 ~~~--~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.+ |...+..++|+|+|++ |+.+ ++|.|.+|++.
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~-----l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDV-----LASG-MGFNILIWNRE 381 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSE-----EEEE-ETTEEEEEECC
T ss_pred ecCCCCCceEEEEEEecCccE-----EEEe-cCCcEEEEecC
Confidence 554 4566777899999874 6777 58999999874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.81 Aligned_cols=293 Identities=12% Similarity=0.160 Sum_probs=226.7
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+..+|.+++|+|++++||+++.|+.|+||+++....+....+ .+|...|++++|+|+++.+++++.|+.|++|++....
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 356799999999999999999999999999964211144444 4799999999999998889999999999999997221
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc----eee-ec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPI-RR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----~~~-~~ 252 (445)
+.....+..|. ..|.+++|+|++++|++++.+ |.|++||+..+.. ... ..
T Consensus 86 -----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 86 -----------------------WKPTLVILRIN-RAARCVRWAPNEKKFAVGSGS-RVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp -----------------------EEEEEECCCCS-SCEEEEEECTTSSEEEEEETT-SSEEEEEEETTTTEEEEEEECTT
T ss_pred -----------------------eeeeEEeecCC-CceeEEEECCCCCEEEEEeCC-CEEEEEEecCCCcceeeeeeecc
Confidence 12222334554 799999999999999999999 7999999998763 222 34
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC------------------CCCc-ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETN------------------TWTS-EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~------------------~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
|...|.+++|+|++++|++++.|+.|++||++ .++. ..+..|...+.+++|+|++++|+++
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 67899999999999999999999999999964 3333 4455788899999999999999877
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC--CCe
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--TPL 390 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~--~~~ 390 (445)
+ .++.+..|++. ..+.+..+..|. .|.+++|+|++++|+++ .| +.|++|++.. ++.
T Consensus 221 ~-~d~~i~i~d~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~i~~~~~~~~~~ 279 (372)
T 1k8k_C 221 S-HDSTVCLADAD-------------KKMAVATLASETLPLLAVTFITESSLVAAG-HD------CFPVLFTYDSAAGKL 279 (372)
T ss_dssp E-TTTEEEEEEGG-------------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TT------SSCEEEEEETTTTEE
T ss_pred e-CCCEEEEEECC-------------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eC------CeEEEEEccCcCceE
Confidence 5 44555555543 445566777787 89999999999988877 66 8999999987 431
Q ss_pred ee---------------------------eeee------eee-eCCCCCCCceeEe-ecCCCCCCCeEEEEecCeeeEee
Q 013338 391 IS---------------------------LSLI------GFI-RGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 391 ~~---------------------------~~~~------~~~-~~~~~~v~~v~~s-pdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
.. .... ..+ .+|...|++++|. ++|. .+.+|+.|..+|.|.+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~--~~~~l~s~~~Dg~i~~W 357 (372)
T 1k8k_C 280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA--KCSQFCTTGMDGGMSIW 357 (372)
T ss_dssp EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT--SCSEEEEEETTSEEEEE
T ss_pred EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc--ceeeEEEecCCCceEEE
Confidence 10 0000 223 4899999999977 4440 12458888899999999
Q ss_pred eeee
Q 013338 436 PLIF 439 (445)
Q Consensus 436 ~~~~ 439 (445)
++.-
T Consensus 358 ~~~~ 361 (372)
T 1k8k_C 358 DVRS 361 (372)
T ss_dssp EHHH
T ss_pred EecC
Confidence 9753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=276.92 Aligned_cols=299 Identities=12% Similarity=0.166 Sum_probs=226.8
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-CcceeEEecCCCCCeeEEEECcC-CCcEEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~l~~spd-~~~l~~~~~dg~i~vw~~~~ 175 (445)
+...|.+++|+|++++|++++.|+.|++|++.... +........+|...|++++|+|+ +..+++++.|+.|++||+..
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 34679999999999999999999999999996421 22233334579999999999998 67788888899999999985
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCceeeec-C
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRR-G 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~ 253 (445)
.......... .....+..|. ..|.+++|+|+ +.+|++++.| |.|++||+++++...... +
T Consensus 146 ~~~~~~~~~~----------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 146 CTESPSNYTP----------------LTPGQSMSSV-DEVISLAWNQSLAHVFASAGSS-NFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp TSSCTTTCCC----------------BCCCCSCCSS-CCCCEEEECSSCTTEEEEESSS-SCEEEEETTTTEEEEEECCC
T ss_pred Cccccccccc----------------cccccccCCC-CCeeEEEeCCCCCcEEEEEcCC-CCEEEEECCCCCcceEEecc
Confidence 5411000000 0011134454 79999999998 7889999888 799999999887654443 2
Q ss_pred ------CCCeeEEEEcCCC-CEEEEEecCC---eEEEEeCCCCC-c-cccc-CCCCCeeEEEECC-CCCeEEEEEcCCce
Q 013338 254 ------FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWT-S-EPWS-STSGFVTGATWDP-EGRMILLAFAGSLT 319 (445)
Q Consensus 254 ------~~~v~~~~~sp~g-~~l~~~~~dg---~v~iwd~~~~~-~-~~~~-~~~~~v~~~~~sp-~~~~l~~~~~~~~~ 319 (445)
...|.+++|+|++ .+|++++.|+ .|++||++++. . ..+. .|...|.+++|+| ++++|++++. +
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-d-- 284 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-D-- 284 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-S--
T ss_pred ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-C--
Confidence 6789999999997 6899999998 99999999863 3 4555 7899999999999 8888887743 3
Q ss_pred EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCeeeeee--
Q 013338 320 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-- 395 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~-- 395 (445)
+.+++|+.. ..+.+..+.+|. .|.+++|+|++ ++|++++.| +.|++||+.+++......
T Consensus 285 -g~v~~wd~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~ 347 (416)
T 2pm9_A 285 -NTVLLWNPE----------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD------NKIEVQTLQNLTNTLDEQET 347 (416)
T ss_dssp -SEEEEECSS----------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS------SEEEEEESCCCCCSSCC---
T ss_pred -CCEEEeeCC----------CCccceeecCCCCceEEEEECCCCCCEEEEEecC------CcEEEEEccCCCCCcccccc
Confidence 445555432 445667778888 89999999999 899999887 999999998755321100
Q ss_pred ----------------------------eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 396 ----------------------------IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 396 ----------------------------~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
......|..++.+++|+|||++ |+++..+|.|.+|++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-----la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 348 ETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL-----VQITPDGKGVSITNPKI 414 (416)
T ss_dssp -------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE-----ECBCTTSSCBCCBCCCC
T ss_pred cccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE-----EEEeCCCCeEEEEEecc
Confidence 0011126678889999999885 78888999999998753
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=284.57 Aligned_cols=303 Identities=13% Similarity=0.055 Sum_probs=212.7
Q ss_pred cCCeeEEEEccCC---------CEEEE-------------------EECCCeEEEEEccCCCCcce-eEEecCCCCCeeE
Q 013338 99 EVDLQGVSWHQHK---------HIVAF-------------------ISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKV 149 (445)
Q Consensus 99 ~~~v~~~~~sp~g---------~~la~-------------------~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~ 149 (445)
+..|.+++|+|++ ++||+ ++.|++|+||+++..+.... ......|.+.|++
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~ 212 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD 212 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence 4578888888876 56666 45778999999965322111 1112357789999
Q ss_pred EEECcC------CCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 150 LEWRPN------GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 150 l~~spd------~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
++|+|+ ++.|++++.||+|++||+............. -.....+.+|. ..|++++|+++
T Consensus 213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~--------------~~p~~~l~~h~-~~v~sv~~s~~ 277 (524)
T 2j04_B 213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC--------------EKPSLTLSLAD-SLITTFDFLSP 277 (524)
T ss_dssp EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC--------------CSCSEEECCTT-TCEEEEEESSS
T ss_pred EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee--------------cCceEEEEcCC-CCEEEEEecCC
Confidence 999997 4577778889999999997443211000000 00122466775 89999999986
Q ss_pred CCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCeeEE--EEcCCC-CEEEEEecCCeEEEEeCCCCCc-ccccCCC--
Q 013338 224 GRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSIL--KWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS-- 295 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~~~--~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~-- 295 (445)
+ .|++|+.| |+|++||++++.. ..+..|...|.++ +|+|++ ++|++++.|++|+|||+++++. ..+..|.
T Consensus 278 ~-~lasgs~D-gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 278 T-TVVCGFKN-GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp S-EEEEEETT-SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred C-eEEEEeCC-CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 4 79999999 7999999997643 3466789999999 578888 8999999999999999998765 2333443
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
..|.+++|+|+++.+++++ .+.. +++|+.. ....+..+.+|. .|++++|+|+|++|++|+.|
T Consensus 356 ~~v~~v~fsp~~~~l~s~~-~d~t---v~lwd~~----------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D--- 418 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSD-GASS---LRAVPSR----------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD--- 418 (524)
T ss_dssp CSCCCEEEETTTTEEEEEC-SSSE---EEEEETT----------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETT---
T ss_pred CcccceEeCCCcCeEEEeC-CCCc---EEEEECc----------ccccceeeecCCCceEEEEeCCCCCeEEEEECC---
Confidence 3578999999999888664 3344 4444432 334455677888 89999999999999999988
Q ss_pred ccceEEEEEEccCCCe--------------e-e------------------------eeeeeeeeCCCCCCCceeEeecC
Q 013338 375 IYKGLIAIYDARRTPL--------------I-S------------------------LSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~--------------~-~------------------------~~~~~~~~~~~~~v~~v~~spdg 415 (445)
++|++||+..+.+ + . ...+..+.+|...|++|+|+|++
T Consensus 419 ---gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~ 495 (524)
T 2j04_B 419 ---GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495 (524)
T ss_dssp ---TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCST
T ss_pred ---CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCC
Confidence 8999998642110 0 0 11233456788999999999998
Q ss_pred CCCCCCeEEEEecCeeeEeeeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
. .+.+++.|..+|.|.++.|.-.
T Consensus 496 ~--~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 496 A--GGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp T--TTTEEEEECTTSEEEEEECSCC
T ss_pred C--ccHHHHhhccCceEEEEEcccc
Confidence 6 3678999999999999988643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=261.69 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=193.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++|++|+.|++|+|||+. +++....+ .+|...|.+++|+|++..+++++.|+.|++||+..
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--- 138 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVA--TGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--- 138 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---
T ss_pred cccEEEEEECCCCCEEEEEeCCCEEEEEECC--CCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---
Confidence 3469999999999999999999999999995 46555555 57999999999999998999999999999999861
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC------CCeEEEEEecCCeEEEEEccCCCce-eee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLGT-PIR 251 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~g~v~vwd~~~~~~~-~~~ 251 (445)
.+...+.+|. ..|.+++|+|. +..|++++.| |.|++||+++.+.. .+.
T Consensus 139 -----------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 139 -----------------------QCLATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGND-KMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp -----------------------CEEEEECCCS-SCEEEEEECCC------CCEEEEEETT-SCEEEEETTTTEEEEEEC
T ss_pred -----------------------CeEEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeCC-CEEEEEECCcchhheeec
Confidence 1344567775 79999999985 4489999999 79999999987654 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
.|...|.+++|+|++++|++++.|+.|++||+.+++......+...+.+++|+|++.+++++.... +..+.+...
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~--- 268 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQ--- 268 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTE---
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcC---
Confidence 788999999999999999999999999999999988744444567899999999999999776532 444443211
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
..... ...........+. .+.+++|+|||++|++++.| +.|+|||+.++
T Consensus 269 ~~~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D------g~i~vWd~~t~ 318 (319)
T 3frx_A 269 YLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD------NVIRVWQVMTA 318 (319)
T ss_dssp EEEEE--ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEEC
T ss_pred eeeec--cCccccccccCcCcceeEEEECCCCCEEEEeecC------ceEEEEEEeec
Confidence 00000 0001111112233 68899999999999999988 99999998763
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=264.39 Aligned_cols=264 Identities=14% Similarity=0.189 Sum_probs=210.4
Q ss_pred ccccccccccccccccccCCCcCCcC------------------------cCCeeEEEEccCCCEEEEEECCCeEEEEEc
Q 013338 73 LFSTLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDY 128 (445)
Q Consensus 73 ~~~~l~g~~~~~~~~~~~~~~~~~~~------------------------~~~v~~~~~sp~g~~la~~~~d~~i~iw~~ 128 (445)
....+.||.+.+....+.|....+.. ...|.+++|+|+|++||+|+.|+.+++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567777777766666665443322 225889999999999999999999999999
Q ss_pred cCCCCcc-eeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEee
Q 013338 129 EDSEGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL 207 (445)
Q Consensus 129 ~~~~~~~-~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (445)
....+.. ......+|...|.++.|+++ +.+++++.|+.|++||+... .+...+
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~-------------------------~~~~~~ 180 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETG-------------------------QQTTTF 180 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTT-------------------------EEEEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCC-------------------------cEEEEE
Confidence 6543221 22233579999999999998 56999999999999999722 345567
Q ss_pred cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 013338 208 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 286 (445)
Q Consensus 208 ~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 286 (445)
.+|. ..|.+++|+|+++++++++.| |.|++||++++.... +..|...|.+++|+|++++|++++.|++|++||++++
T Consensus 181 ~~h~-~~v~~~~~~~~~~~l~sg~~d-~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 181 TGHT-GDVMSLSLAPDTRLFVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp CCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred cCCC-CceEEEEECCCCCEEEEEeCC-CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 7786 899999999999999999999 799999999887654 5568899999999999999999999999999999987
Q ss_pred Cccccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 287 TSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
+..... .+...|++++|+|++++|++++. ++.+..|++. ....+..+.+|. .|.+++|+|+|
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETT-------------TCCEEEEEECCSSCEEEEEECTTS
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcc-------------cCcEeeEeecCCCcEEEEEEcCCC
Confidence 763322 33457999999999999997743 3444444432 345566788888 89999999999
Q ss_pred CEEEEEEcCCCcccceEEEEEE
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++|++++.| +.|+|||
T Consensus 325 ~~l~s~s~D------~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWD------SFLKIWN 340 (340)
T ss_dssp SCEEEEETT------SCEEEEC
T ss_pred CEEEEEcCC------ccEEecC
Confidence 999999988 9999996
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=270.38 Aligned_cols=296 Identities=16% Similarity=0.214 Sum_probs=225.2
Q ss_pred cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEe----cCCCCCeeEEEECcC----CCcEEEEecCC
Q 013338 99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILT----SDSQRDVKVLEWRPN----GGRSLSVGCKG 166 (445)
Q Consensus 99 ~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~l~~spd----~~~l~~~~~dg 166 (445)
..+|.+++|+|+ ...+++++.++.|+||++.. ++.+..+. ..|...|++++|+|+ +..+++++.||
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS--QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG--GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC--CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 356999999984 45566667778999999964 33333332 136788999999999 55788888999
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
.|++||+... .+...+.+|. ..|.+++|+| ++++|++++.| |.|++||++++
T Consensus 96 ~i~v~d~~~~-------------------------~~~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~ 148 (366)
T 3k26_A 96 IIRIINPITM-------------------------QCIKHYVGHG-NAINELKFHPRDPNLLLSVSKD-HALRLWNIQTD 148 (366)
T ss_dssp EEEEECTTTC-------------------------CEEEEEESCC-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTTT
T ss_pred EEEEEEchhc-------------------------eEeeeecCCC-CcEEEEEECCCCCCEEEEEeCC-CeEEEEEeecC
Confidence 9999998732 2345566775 8999999999 99999999999 79999999988
Q ss_pred Cceeee----cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc----------------------------
Q 013338 246 LGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---------------------------- 292 (445)
Q Consensus 246 ~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~---------------------------- 292 (445)
+..... .|...|.+++|+|++++|++++.|+.|++||+++++.. .+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 776553 67899999999999999999999999999999986542 111
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc-ccCccccccccccCCC-ccceEEeCCC--CCEEEEE
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH-LLPVDLPDIVSLTGSQ-GIEKIAWDAS--GERLAVS 368 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~~~sp~--g~~l~~~ 368 (445)
.|...|.+++|+ +++++++ ..++.+..|++.......... ........+..+..|. .|++++|+|+ +++|+++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSK-SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEE-CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred CCcceEEEEEEc--CCEEEEE-ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 288899999998 6677755 345666666654332111100 0001123356667777 8999999999 9999999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC--CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.| |.|++||+.+++.. ......+.+| ...|++++|+|+|++ |+.+..+|.|.+|++.
T Consensus 306 ~~d------g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQV------GKLYVWDLEVEDPH-KAKCTTLTHHKCGAAIRQTSFSRDSSI-----LIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTT------SCEEEEECCSSSGG-GCEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred ecC------CcEEEEECCCCCCc-cccceEEcccccCCceEEEEeCCCCCe-----EEEEeCCCEEEEEEec
Confidence 887 89999999987654 2223456666 789999999999875 7888899999999874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-34 Score=261.13 Aligned_cols=257 Identities=16% Similarity=0.260 Sum_probs=195.7
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++||+|+.|++++||++...+.+....+ .+|...|++++|+|+++.|++++.|+.|++||+....
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~- 138 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED- 138 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-
T ss_pred CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-
Confidence 34699999999999999999999999999864332333333 5899999999999999999999999999999997322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~ 255 (445)
...++..+.+|. ..|.+++|+|++++|++++.| |.|++||+..+.. ..+..|..
T Consensus 139 ---------------------~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d-~~i~~w~~~~~~~~~~~~~~~h~~ 195 (345)
T 3fm0_A 139 ---------------------EYECVSVLNSHT-QDVKHVVWHPSQELLASASYD-DTVKLYREEEDDWVCCATLEGHES 195 (345)
T ss_dssp ---------------------CEEEEEEECCCC-SCEEEEEECSSSSCEEEEETT-SCEEEEEEETTEEEEEEEECCCSS
T ss_pred ---------------------CeEEEEEecCcC-CCeEEEEECCCCCEEEEEeCC-CcEEEEEecCCCEEEEEEecCCCC
Confidence 223456677775 799999999999999999999 7999999987753 34567889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----------------ccc-CCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----------------PWS-STSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----------------~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
.|.+++|+|+|++|++++.|++|++||....... .+. .|...|.+++|+|++..|++++. +.
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~ 274 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DD 274 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TS
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CC
Confidence 9999999999999999999999999997432210 112 27788999999999999997754 45
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC-CEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g-~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.+..|+......... +..........+|. .|++++|+|++ .+||+++.| |+|++|++.+++..
T Consensus 275 ~i~vw~~~~~~~~~~----~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D------g~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQ----PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD------GEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEECTTSCTTS----CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT------SCEEEEEECC----
T ss_pred eEEEEEeCCCCCcce----eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC------CcEEEEEecCCCCc
Confidence 555555432110000 00000112335777 89999999998 599999988 99999999876544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=262.14 Aligned_cols=279 Identities=14% Similarity=0.170 Sum_probs=223.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+.+++|++ ..+++++.|+.|++|++. +++........|...|++++|+|++..+++++.||.|++||+...
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---- 166 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNAD--SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---- 166 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETT--TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC----
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCC--CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC----
Confidence 466788876 457778899999999995 466666665568999999999999888989999999999998732
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCee
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLS 258 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~ 258 (445)
.....+.+|. ..|.+++| +++.|++++.| |.|++||++.... ..+..|...|.
T Consensus 167 ---------------------~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 167 ---------------------TKLRTMAGHQ-ARVGCLSW--NRHVLSSGSRS-GAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp ---------------------CEEEEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred ---------------------eEEEEecCCC-CceEEEEE--CCCEEEEEcCC-CCEEEEecccCcceeeEEcCCCCCee
Confidence 2345566775 89999999 45799999999 7999999985433 45667889999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCcccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 335 (445)
+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++..++++++ .++.+..|++.
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~--------- 292 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA--------- 292 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT---------
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC---------
Confidence 999999999999999999999999999876 456688999999999998877665543 34555555432
Q ss_pred ccCccccccccccCCCccceEEeCCCCCEEEEEE--cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY--KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s--~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
....+..+..+..|.+++|+|++++|++++ .+ +.|++||+.+++... ...+.+|...|.+++|+|
T Consensus 293 ----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d------g~i~v~~~~~~~~~~---~~~~~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 293 ----TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD------NNLSIWSYSSSGLTK---QVDIPAHDTRVLYSALSP 359 (401)
T ss_dssp ----TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT------CEEEEEEEETTEEEE---EEEEECCSSCCCEEEECT
T ss_pred ----CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC------CcEEEEecCCcccee---EEEecCCCCCEEEEEECC
Confidence 334455555455899999999999999965 45 999999999865442 335678999999999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+|++ |+.+..+|.|.+|++.-
T Consensus 360 dg~~-----l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 360 DGRI-----LSTAASDENLKFWRVYD 380 (401)
T ss_dssp TSSE-----EEEECTTSEEEEEECCC
T ss_pred CCCE-----EEEEeCCCcEEEEECCC
Confidence 9874 78888999999998863
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=259.17 Aligned_cols=254 Identities=13% Similarity=0.255 Sum_probs=189.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++.+|++++.|++|+|||+.. ++....+ .+|...|++++|+|+++.+++++.|+.|++||+... .
T Consensus 76 ~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~--~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~ 151 (343)
T 2xzm_R 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRT--GTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C 151 (343)
T ss_dssp SSCEEEEEECSSTTEEEEEETTSEEEEEETTS--SCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c
Confidence 34699999999999999999999999999953 5555555 579999999999999999999999999999998611 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC----------CeEEEEEecCCeEEEEEccCCCce
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG----------RYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.. .......|. ..|.+++|+|++ .+|++++.| |.|++||.......
T Consensus 152 ~~----------------------~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~ 207 (343)
T 2xzm_R 152 KF----------------------SSAEKENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWD-GRLKVWNTNFQIRY 207 (343)
T ss_dssp EE----------------------ECCTTTSCS-SCEEEEEECCCCCSCSCCCSSCCEEEEEETT-SEEEEEETTTEEEE
T ss_pred ee----------------------eeecccCCC-ceeeeeeeccccccccccCCCCCEEEEEcCC-CEEEEEcCCCceeE
Confidence 00 001122453 789999999987 689999999 79999995544345
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC-cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
.+..|...|.+++|+|+|++|++++.|+.|++||+.... ......+...|.+++|+|++++++++.+ ..+..|++..
T Consensus 208 ~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d--~~v~iw~~~~ 285 (343)
T 2xzm_R 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD--QGVKIFNLMT 285 (343)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEES--SCEEEEESSS
T ss_pred EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECC--CCEEEEEeCC
Confidence 566788999999999999999999999999999995433 3333345667999999999998876643 3355555432
Q ss_pred CCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
........+............+|. .|.+++|+|+|++|++|+.| |.|++|+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D------g~v~~w~~~~g 341 (343)
T 2xzm_R 286 QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD------GVIRTFSFETS 341 (343)
T ss_dssp CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT------SEEEEEEEEEE
T ss_pred CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC------ceEEEEEEEcc
Confidence 211000000000001112233566 79999999999999999988 99999998753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=260.48 Aligned_cols=246 Identities=15% Similarity=0.195 Sum_probs=189.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|++++|+|+|++||+|+.|++|+|||+.......... ..+|...|++++|++ ++..|++++.|++|++||+...
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEE-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEE-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 3469999999999999999999999999996422122233 358999999999986 3788999999999999998732
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCc----eee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG----TPI 250 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~----~~~ 250 (445)
.+.....+.+|. ..|.+++|+|+ +.+|++++.| |.|++||++.+.. ...
T Consensus 92 -----------------------~~~~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~D-~~i~lwd~~~~~~~~~~~~~ 146 (316)
T 3bg1_A 92 -----------------------TWEKSHEHAGHD-SSVNSVCWAPHDYGLILACGSSD-GAISLLTYTGEGQWEVKKIN 146 (316)
T ss_dssp -----------------------CCCEEEEECCCS-SCCCEEEECCTTTCSCEEEECSS-SCEEEEEECSSSCEEECCBT
T ss_pred -----------------------cceEEEEccCCC-CceEEEEECCCCCCcEEEEEcCC-CCEEEEecCCCCCcceeeee
Confidence 122344566775 79999999997 7899999999 7999999987642 223
Q ss_pred ecCCCCeeEEEEcCC-----------------CCEEEEEecCCeEEEEeCCCCC----cccccCCCCCeeEEEECCCC--
Q 013338 251 RRGFGGLSILKWSPT-----------------GDYFFAAKFDGTFYLWETNTWT----SEPWSSTSGFVTGATWDPEG-- 307 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~-----------------g~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~-- 307 (445)
..|...|.+++|+|+ +++|++++.|++|++||++... ...+..|...|.+++|+|++
T Consensus 147 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 147 NAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp TSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred ccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence 457788999999997 4789999999999999997642 24577899999999999987
Q ss_pred --CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 308 --RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 308 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++|+++ +.++.+..|++..... .......+..|. .|.+++|+|+|++||+++.| ++|++|+
T Consensus 227 ~~~~las~-s~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D------~~v~lw~ 290 (316)
T 3bg1_A 227 PTSTIASC-SQDGRVFIWTCDDASS---------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGD------NKVTLWK 290 (316)
T ss_dssp SCCEEEEE-ETTCEEEEEECSSTTC---------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESS------SCEEEEE
T ss_pred CCceEEEE-cCCCeEEEEEccCccc---------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC------CeEEEEE
Confidence 677765 3445555555432100 001112334556 89999999999999999988 9999999
Q ss_pred cc
Q 013338 385 AR 386 (445)
Q Consensus 385 ~~ 386 (445)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 86
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=275.52 Aligned_cols=291 Identities=14% Similarity=0.200 Sum_probs=209.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|++++|+|+|++||+++.|+.|+||++.....+....+ .+|...|++++|+|+++.|++++.|+.|++||+.....
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 45799999999999999999999999999964211333333 57999999999999999999999999999999984331
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC----ceeeec-C
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRR-G 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~~-~ 253 (445)
+.....+.+|. ..|.+++|+|++++|++++.| |.|++||+++++ ...+.. |
T Consensus 90 ----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 90 ----------------------WKQTLVLLRLN-RAATFVRWSPNEDKFAVGSGA-RVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp ----------------------CCCEEECCCCS-SCEEEEECCTTSSCCEEEESS-SCEEECCC-----CCCCEEECSSC
T ss_pred ----------------------eeeeeEecccC-CceEEEEECCCCCEEEEEecC-CeEEEEEECCcccceeeeEeeccc
Confidence 11233455665 899999999999999999999 799999999876 344555 8
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC------------------c-ccccCCCCCeeEEEECCCCCeEEEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT------------------S-EPWSSTSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~------------------~-~~~~~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
...|.+++|+|++++|++++.|+.|++||++..+ . ..+ .|...|.+++|+|++++|++++
T Consensus 146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 8999999999999999999999999999986322 2 233 7888999999999999999774
Q ss_pred cCCceEEEEEeccCCCCccccccCccccc----cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPD----IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
. ++.+..|++. .... +..+.+|. .|.+++|+|+|++|++++.+ +.+ +|+...+.
T Consensus 225 ~-d~~i~iwd~~-------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~-~~~~~~~~ 283 (377)
T 3dwl_C 225 H-DSSVTIAYPS-------------APEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY------SPI-LLQGNESG 283 (377)
T ss_dssp T-TTEEC-CEEC-------------STTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS------SEE-EECCCC--
T ss_pred C-CCcEEEEECC-------------CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC------cEE-EEEeCCCc
Confidence 3 3444444443 2222 56777888 89999999999999988654 555 77665211
Q ss_pred eeee----------------------------------e-------------eeeeeeCCCCCCCceeEeecCCCCCCCe
Q 013338 390 LISL----------------------------------S-------------LIGFIRGPGDNPKPVAFSFHDKFKQGPL 422 (445)
Q Consensus 390 ~~~~----------------------------------~-------------~~~~~~~~~~~v~~v~~spdg~~~~~~~ 422 (445)
.... . .......|...|+++++.+.... ....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-~~~~ 362 (377)
T 3dwl_C 284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-NITA 362 (377)
T ss_dssp -CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-EEEE
T ss_pred eEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-ceEE
Confidence 0000 0 00011138888999997765432 1123
Q ss_pred EEEEecCeeeEeeee
Q 013338 423 LSVCWSSGFCCTYPL 437 (445)
Q Consensus 423 l~~~~~~G~v~~~~~ 437 (445)
++.|-.||.|.+|++
T Consensus 363 ~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 363 FTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTSEEEEECC
T ss_pred EEeecCCCcEEEecC
Confidence 555667999999975
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=262.81 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=220.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..+|.+++|+|||++++++..++.+.+|... .... .....+|...|++++|+|+++.+++++ |+.|++|++.....
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIP--RHAR-QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCC--SEEE-EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccC--Cccc-cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 3468999999999999988877776666442 2222 222247999999999999977776666 99999999985443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc---eeeecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~ 255 (445)
...+.. .....|. ..|.+++|+|++++|++++.+ |.|++||+.+++. ..+..|..
T Consensus 85 ~~~~~~--------------------~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 85 KSPVSQ--------------------LDCLNRD-NYIRSCKLLPDGCTLIVGGEA-STLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp CSCSEE--------------------EECSCTT-SBEEEEEECTTSSEEEEEESS-SEEEEEECCCC--EEEEEEECSSS
T ss_pred eeeeec--------------------ccccCCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEECCCCCcceeeecccCCC
Confidence 322211 0112453 799999999999999999999 7999999998863 33456788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.+.+++|+|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|+++++++++ .++.+..|++.
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~-------- 213 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLR-------- 213 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT--------
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECC--------
Confidence 899999999999999999999999999998876 45667889999999999999999764 33445555432
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
..+.+..+.....+.+++|+|++++|++++.+ +.|++||+++++.. .+..|...|.+++|+|+
T Consensus 214 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~i~~~~~~~~~~~------~~~~~~~~v~~~~~~~~ 276 (337)
T 1gxr_A 214 -----EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES------SNVEVLHVNKPDKY------QLHLHESCVLSLKFAYC 276 (337)
T ss_dssp -----TTEEEEEEECSSCEEEEEECTTSSEEEEEETT------SCEEEEETTSSCEE------EECCCSSCEEEEEECTT
T ss_pred -----CCceEeeecCCCceEEEEECCCCCEEEEEcCC------CcEEEEECCCCCeE------EEcCCccceeEEEECCC
Confidence 22333334333379999999999999999988 89999999987654 46678999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++ ++++..+|.|.+|++.
T Consensus 277 ~~~-----l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 277 GKW-----FVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SSE-----EEEEETTSEEEEEETT
T ss_pred CCE-----EEEecCCCcEEEEECC
Confidence 874 7788889999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.81 Aligned_cols=283 Identities=13% Similarity=0.216 Sum_probs=226.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++++|++++.|+.|++|+. +++....+ ..|...|.+++|+|++..+++++.|+.|++|++.....
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNK---TGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEET---TSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 447999999999999999999999999993 45555555 57999999999999998999999999999999974322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccC--------------CCceeEEEECCCCCeEEEEEecCCeEEEEEccC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------------GEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
. ..+..+. ...+.+++|+|++ .+++++.+ |.|++||+.+
T Consensus 184 ~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~i~~~d~~~ 236 (425)
T 1r5m_A 184 M-------------------------QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPK-GAIFVYQITE 236 (425)
T ss_dssp E-------------------------EEECCC---------------CCCBSCCEEEETT-EEEEECGG-GCEEEEETTC
T ss_pred E-------------------------EEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCC-CeEEEEEcCC
Confidence 2 2222221 1238999999985 47788888 7999999998
Q ss_pred CCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 245 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 245 ~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
++.. .+..|...|.+++|+|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|++ ++++++ .++.+..
T Consensus 237 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i 314 (425)
T 1r5m_A 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVRL 314 (425)
T ss_dssp SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEEE
T ss_pred CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEEE
Confidence 8764 4456789999999999999999999999999999998776 4566788999999999999 666553 4455555
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-----------
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL----------- 390 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~----------- 390 (445)
|++. ....+..+..|. .|.+++|+|++++|++++.| +.|++||+.+++.
T Consensus 315 ~d~~-------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 315 WSLK-------------QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD------GQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EETT-------------TTEEEEEEECTTCCEEEEEECTTSSEEEEEETT------SCEEEEECHHHHC-----------
T ss_pred EECC-------------CCcEeEecccCCccEEEEEEcCCCCEEEEEECC------CeEEEEECCCCccceeeeeccccc
Confidence 5542 344556667777 89999999999999999988 8999999986550
Q ss_pred ----eeeeeeeeeeCCCC--CCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 391 ----ISLSLIGFIRGPGD--NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 391 ----~~~~~~~~~~~~~~--~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
....++..+.+|.. .|++++|+|++++ |+++..+|.|.+|++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK-----ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSE-----EEEEESSSCCEEEECC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCce-----EEEEecCceEEEEeec
Confidence 01114567788866 9999999999874 7888899999999873
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=255.02 Aligned_cols=241 Identities=14% Similarity=0.177 Sum_probs=197.7
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++++|+|++..+++++.||.|++||+... .....+..|. ..|.+++|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------------~~~~~~~~~~-~~v~~~~~ 63 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------------VEVRSIQVTE-TPVRAGKF 63 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------ceeEEeeccC-CcEEEEEE
Confidence 579999999999999999999999999999999722 2455567775 79999999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCC
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGF 297 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~ 297 (445)
+|++++|++++.| |+|++||+.+++.. .+..|...|.+++|+|++++|++++.|++|++||++++.. ..+..|...
T Consensus 64 ~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 64 IARKNWIIVGSDD-FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp EGGGTEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred eCCCCEEEEECCC-CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 9999999999999 79999999988774 4567889999999999999999999999999999988744 456789999
Q ss_pred eeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCCC-ccceEEeCC--CCCEEEEEEcCC
Q 013338 298 VTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDA--SGERLAVSYKGG 372 (445)
Q Consensus 298 v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp--~g~~l~~~s~d~ 372 (445)
|.+++|+| ++..|++++ .++.+..|++.. ......+ .+|. .+..++|+| ++++|++++.|
T Consensus 143 v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D- 207 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGC-LDRTVKVWSLGQ-------------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD- 207 (304)
T ss_dssp EEEEEECTTCTTEEEEEE-TTSEEEEEETTC-------------SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-
T ss_pred EEEEEECCCCCCEEEEEe-CCCeEEEEECCC-------------CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-
Confidence 99999999 567777653 445555554421 1222222 3343 788888886 78899999988
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++|++||+++++.+ ..+.+|...|.+++|+|+++ +|+.|..+|.|.+|++.
T Consensus 208 -----~~i~iWd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~-----~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 208 -----LTIKIWDYQTKSCV-----ATLEGHMSNVSFAVFHPTLP-----IIISGSEDGTLKIWNSS 258 (304)
T ss_dssp -----SEEEEEETTTTEEE-----EEEECCSSCEEEEEECSSSS-----EEEEEETTSCEEEEETT
T ss_pred -----CeEEEEeCCCCccc-----eeeCCCCCCEEEEEECCCCC-----EEEEEcCCCeEEEEECC
Confidence 99999999987654 57889999999999999976 47788899999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=262.26 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=184.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce-eEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|++++| +++.||+|+|||+...+.... .....+|...|++++|+|+++.|++++.|+.|++||+...
T Consensus 95 ~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-- 171 (357)
T 4g56_B 95 AGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-- 171 (357)
T ss_dssp SCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT--
T ss_pred CCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--
Confidence 469999999998765 578899999999965332222 1223479999999999999999999999999999998822
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCceee---ecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPI---RRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~~---~~~~ 254 (445)
.++..+.+|. ..|++++|+|++. ++++++.| |.|++||+++++.... ..+.
T Consensus 172 -----------------------~~~~~~~~h~-~~v~~v~~s~~~~~~~~s~~~d-g~v~~wd~~~~~~~~~~~~~~~~ 226 (357)
T 4g56_B 172 -----------------------AVLKSYNAHS-SEVNCVAACPGKDTIFLSCGED-GRILLWDTRKPKPATRIDFCASD 226 (357)
T ss_dssp -----------------------EEEEEECCCS-SCEEEEEECTTCSSCEEEEETT-SCEEECCTTSSSCBCBCCCTTCC
T ss_pred -----------------------cEEEEEcCCC-CCEEEEEEccCCCceeeeeccC-CceEEEECCCCceeeeeeecccc
Confidence 3556677886 8999999999875 67888888 7999999998876443 2456
Q ss_pred CCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC-eEEEEEcCCceEEEEEeccCCCC
Q 013338 255 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 255 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
..+.+++|+|+ +.+|++|+.|+.|++||+++++. ..+..|...|++++|+|++. +|+++ +.++. +++|+..
T Consensus 227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-s~D~~---i~iwd~~-- 300 (357)
T 4g56_B 227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI-SEDCT---VAVLDAD-- 300 (357)
T ss_dssp SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE-ETTSC---EEEECTT--
T ss_pred ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE-eCCCE---EEEEECC--
Confidence 78999999998 56788999999999999999876 56778999999999999985 56655 44444 4455432
Q ss_pred ccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
..+.+ ...+|. .|++++|+| ++++|++++.| ++|++|++.+
T Consensus 301 --------~~~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~D------g~v~iW~~~~ 343 (357)
T 4g56_B 301 --------FSEVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWD------HKVLHHHLPS 343 (357)
T ss_dssp --------SCEEE-EECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECC-
T ss_pred --------CCcEe-EECCCCCCEEEEEEeCCCCCEEEEEcCC------CeEEEEECCC
Confidence 22333 334677 899999999 89999999988 9999999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=252.76 Aligned_cols=275 Identities=13% Similarity=0.107 Sum_probs=217.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++| |++++|++++.||.|++|++. +++....+ ..|...|.+++|+|++..+++++.|+.+++|++......
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 94 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKD--DQWLGTVV-YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGE 94 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEES--SSEEEEEE-EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTS
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECC--CCEEEEEe-ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCC
Confidence 45999999 999999999999999999984 34444444 468999999999999999999999999999998743222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
. ....+.+|. ..|.+++| +++++++++.| |.|++|| .......+..|...+.+
T Consensus 95 ~----------------------~~~~~~~~~-~~i~~~~~--~~~~l~~~~~d-~~i~~~d-~~~~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 95 D----------------------PLYTLIGHQ-GNVCSLSF--QDGVVISGSWD-KTAKVWK-EGSLVYNLQAHNASVWD 147 (313)
T ss_dssp C----------------------C-CEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEEE-TTEEEEEEECCSSCEEE
T ss_pred C----------------------cccchhhcc-cCEEEEEe--cCCEEEEEeCC-CCEEEEc-CCcEEEecccCCCceeE
Confidence 1 223356665 89999999 57799999999 7999999 22233455678899999
Q ss_pred EEEcC-CCCEEEEEecCCeEEEEeCCCCCcccccC-CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 260 LKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 260 ~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++|+| ++++|++++.|+.|++||..... ..+.. +...+.+++|+|++. ++++ ..++.+..|++.
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~-~~dg~i~i~d~~----------- 213 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISC-SNDGLIKLVDMH----------- 213 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEE-ETTSEEEEEETT-----------
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEc-cCCCeEEEEECC-----------
Confidence 99998 89999999999999999943322 33333 888999999999998 5544 344555555542
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..+.+..+.+|. .|++++|+|++ .|++++.| +.|++||+++++.. ..+..|...|++++|+|+++
T Consensus 214 --~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~v~iwd~~~~~~~-----~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 214 --TGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED------RTVRIWSKENGSLK-----QVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp --TCCEEEEEECCSSCEEEEEECTTS-CEEEEETT------SEEEEECTTTCCEE-----EEEECSSSCEEEEEECTTSC
T ss_pred --chhhhhhhhcCCceEEEEEEecCC-CEEEEecC------CEEEEEECCCCcee-----EEEeccCceEEEEEEccCCC
Confidence 445667777888 89999999999 58888887 99999999987755 46778888999999999987
Q ss_pred CCCCCeEEEEecCeeeEeeeeee
Q 013338 417 FKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++ ++..+|.|.+|++.-
T Consensus 280 -----~~-~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 280 -----II-VGSSDNLVRIFSQEK 296 (313)
T ss_dssp -----EE-EEETTSCEEEEESCG
T ss_pred -----EE-EEeCCCcEEEEeCCC
Confidence 34 477899999998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=267.29 Aligned_cols=277 Identities=16% Similarity=0.278 Sum_probs=220.3
Q ss_pred CCeeEEEEccCCC-EEEEEECCCeEEEEEc----cCCCCc------ceeEEec---------CCCCCeeEEEECcCCCcE
Q 013338 100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDY----EDSEGK------DACILTS---------DSQRDVKVLEWRPNGGRS 159 (445)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~~d~~i~iw~~----~~~~~~------~~~~~~~---------~~~~~v~~l~~spd~~~l 159 (445)
..|.+++|+|+|+ +||+++.|+.|++|++ .. ++ ....+.. +|...|++++|+|++..|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQE--GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCC--ccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 5799999999999 9999999999999999 54 33 2222221 157799999999999889
Q ss_pred EEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEE
Q 013338 160 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI 239 (445)
Q Consensus 160 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~v 239 (445)
++++.|+.|++|+.. . .....+..|. ..|.+++|+|++++|++++.| |.|++
T Consensus 124 ~~~~~dg~i~i~~~~-~-------------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~i 175 (425)
T 1r5m_A 124 VTGVENGELRLWNKT-G-------------------------ALLNVLNFHR-APIVSVKWNKDGTHIISMDVE-NVTIL 175 (425)
T ss_dssp EEEETTSCEEEEETT-S-------------------------CEEEEECCCC-SCEEEEEECTTSSEEEEEETT-CCEEE
T ss_pred EEEeCCCeEEEEeCC-C-------------------------CeeeeccCCC-ccEEEEEECCCCCEEEEEecC-CeEEE
Confidence 999999999999933 1 1344566675 899999999999999999999 79999
Q ss_pred EEccCCCceeeec-CCCC---------------eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEE
Q 013338 240 WDVAQGLGTPIRR-GFGG---------------LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGAT 302 (445)
Q Consensus 240 wd~~~~~~~~~~~-~~~~---------------v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~ 302 (445)
||+.+++...... +... +.+++|+|++ .+++++.++.|++||+++++. ..+..|...|.+++
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~ 254 (425)
T 1r5m_A 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLE 254 (425)
T ss_dssp EETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEE
T ss_pred EECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEE
Confidence 9999887654433 3333 8999999875 588899999999999999876 45668889999999
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
|+|++++|+++.. ++.+ .+|+.. ....+..+..|. .|.+++|+|++ +|++++.+ +.|+
T Consensus 255 ~~~~~~~l~~~~~-d~~i---~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------~~i~ 313 (425)
T 1r5m_A 255 FNDTNKLLLSASD-DGTL---RIWHGG----------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMD------GSVR 313 (425)
T ss_dssp EETTTTEEEEEET-TSCE---EEECSS----------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETT------SEEE
T ss_pred ECCCCCEEEEEcC-CCEE---EEEECC----------CCccceEecCCCccEEEEEECCCC-EEEEEeCC------CcEE
Confidence 9999999987743 3444 444432 344556667777 89999999999 99999888 9999
Q ss_pred EEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 382 IYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+||+++++.+ ..+..|...|.+++|+|+++ +++++..+|.|.+|++.
T Consensus 314 i~d~~~~~~~-----~~~~~~~~~i~~~~~s~~~~-----~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 314 LWSLKQNTLL-----ALSIVDGVPIFAGRISQDGQ-----KYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEETTTTEEE-----EEEECTTCCEEEEEECTTSS-----EEEEEETTSCEEEEECH
T ss_pred EEECCCCcEe-----EecccCCccEEEEEEcCCCC-----EEEEEECCCeEEEEECC
Confidence 9999986654 46778899999999999977 48888899999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=262.06 Aligned_cols=287 Identities=13% Similarity=0.200 Sum_probs=225.8
Q ss_pred CCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 95 HLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 95 ~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+...+.++.++||++ .+||+|. |++|+|||.. +++....+. .+|...|++|+|+|+|..|++++.|+.|+|||+
T Consensus 101 ~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~--tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 101 EIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp TCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCcccccceeEEECCC-CEEEEEe-CCEEEEEECC--CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 3444566889999986 4777664 9999999985 466555443 367889999999999999999999999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~ 251 (445)
... .++..+.+|. ..+.+++++ +..|++++.| +.+++||...... ..+.
T Consensus 177 ~~~-------------------------~~~~~~~~h~-~~v~~~s~~--~~~l~sgs~d-~~i~~~d~~~~~~~~~~~~ 227 (420)
T 4gga_A 177 QQQ-------------------------KRLRNMTSHS-ARVGSLSWN--SYILSSGSRS-GHIHHHDVRVAEHHVATLS 227 (420)
T ss_dssp TTT-------------------------EEEEEECCCS-SCEEEEEEE--TTEEEEEETT-SEEEEEETTSSSCEEEEEE
T ss_pred CCC-------------------------cEEEEEeCCC-CceEEEeeC--CCEEEEEeCC-CceeEeeecccceeeEEec
Confidence 822 3566677885 788888774 6789999999 7999999987654 3456
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-----ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.|...+..+.|+|+++++++++.|+.+++||..+++. .....|...|.+++|+|++..+++.+.+ ..++.+++|
T Consensus 228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iw 306 (420)
T 4gga_A 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIW 306 (420)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEE
T ss_pred ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEE
Confidence 7889999999999999999999999999999988764 2345788899999999987665533221 123445555
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
+.. +...+..+..+..+.++.|+|+++.+++++... |+.|+|||+.+++.+ ..+.+|.+.|
T Consensus 307 d~~----------t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~----d~~I~iwd~~~~~~v-----~~l~gH~~~V 367 (420)
T 4gga_A 307 NVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRV 367 (420)
T ss_dssp ETT----------TTEEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCE
T ss_pred eCC----------ccccceeeccccceeeeeecCCCCeEEEEEecC----CCEEEEEECCCCcEE-----EEEcCCCCCE
Confidence 432 445556666666899999999999999876321 289999999987665 5788999999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++++|+|||++ |+.|-.||.|.+|++.-
T Consensus 368 ~~l~~spdg~~-----l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 368 LSLTMSPDGAT-----VASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEEECTTSSC-----EEEEETTTEEEEECCSC
T ss_pred EEEEEcCCCCE-----EEEEecCCeEEEEECCC
Confidence 99999999886 66777899999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=263.06 Aligned_cols=236 Identities=17% Similarity=0.265 Sum_probs=190.9
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|++++|+|+|++||+|+.|+.|+|||+. +++....+ .+|...|++++|+|++..+++++.|+.|++||+....
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--- 198 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE--NRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--- 198 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECC--CCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---
Confidence 48999999999999999999999999985 35444444 6899999999999999999999999999999997321
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceee--------e
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI--------R 251 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~--------~ 251 (445)
+...+.. ...+.+++|+| ++++|++++.| |.|++||++++..... .
T Consensus 199 ----------------------~~~~~~~--~~~v~~~~~~~~~~~~l~~~s~d-~~v~iwd~~~~~~~~~~~~~~~~~~ 253 (393)
T 1erj_A 199 ----------------------CSLTLSI--EDGVTTVAVSPGDGKYIAAGSLD-RAVRVWDSETGFLVERLDSENESGT 253 (393)
T ss_dssp ----------------------EEEEEEC--SSCEEEEEECSTTCCEEEEEETT-SCEEEEETTTCCEEEEEC------C
T ss_pred ----------------------eEEEEEc--CCCcEEEEEECCCCCEEEEEcCC-CcEEEEECCCCcEEEeecccccCCC
Confidence 2222332 26899999999 89999999999 7999999998876433 3
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------ccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
.|...|.+++|+|++++|++++.|+.|++||+++... ..+.+|...|.+++|+|++++|++++. ++
T Consensus 254 ~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~ 332 (393)
T 1erj_A 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR 332 (393)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CC
Confidence 5778999999999999999999999999999986432 234578889999999999999997643 34
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC------CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA------SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp------~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+ .+|+.. ....+..+.+|. .|.+++|++ ++++|++|+.| ++|++|+++.
T Consensus 333 ~v---~iwd~~----------~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D------g~i~iW~~~~ 389 (393)
T 1erj_A 333 GV---LFWDKK----------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYKK 389 (393)
T ss_dssp EE---EEEETT----------TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEEE
T ss_pred eE---EEEECC----------CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC------CcEEECcccc
Confidence 44 444432 445667788888 899999876 78999999988 9999999874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=265.03 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=215.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
+....|+|++++||+++.|+.|+||++. +++... ...+|...|++++|+|++..|++++.|+.|++||+.....
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--- 173 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDSN--FNLQRE-IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--- 173 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECTT--SCEEEE-ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC---
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeCC--Ccceee-ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC---
Confidence 4455789999999999999999999985 344333 3357999999999999988899999999999999984322
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec----CC---
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GF--- 254 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~----~~--- 254 (445)
...+.+|. ..|.+++|+|++++|++++.| |.|++||+++++...... +.
T Consensus 174 ----------------------~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 174 ----------------------PRTLIGHR-ATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp ----------------------CEEEECCS-SCEEEEEEETTTTEEEEEETT-SCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred ----------------------ceEEcCCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEeECCCCceeEEeecCCCCCCCc
Confidence 23356675 899999999999999999999 799999999887654432 22
Q ss_pred ------------------CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECCCCC-eEEEE
Q 013338 255 ------------------GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGR-MILLA 313 (445)
Q Consensus 255 ------------------~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~~~-~l~~~ 313 (445)
..+.+++|+|++++|++++.||.|++||+++++.. . ...|...+.+++|+|+++ +|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence 44555566889999999999999999999998762 2 335788999999999999 77765
Q ss_pred EcCCceEEEEEeccCCCCccccccCccccccccccC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 314 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+ .++.+..|++.. ....+..+.. |. .+..+.| +++++|++++.| +.|++|++......
T Consensus 310 ~-~dg~i~vwd~~~------------~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d------~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 310 Y-ENGMLAQWDLRS------------PECPVGEFLINEGTPINNVYF-AAGALFVSSGFD------TSIKLDIISDPESE 369 (420)
T ss_dssp E-TTSEEEEEETTC------------TTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTT------EEEEEEEECCTTCC
T ss_pred e-CCCeEEEEEcCC------------CcCchhhhhccCCCCceEEEe-CCCCEEEEecCC------ccEEEEeccCCCCC
Confidence 3 445555555432 1123455555 44 6777755 688899999887 99999999763221
Q ss_pred e----eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 392 S----LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 392 ~----~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
. ......+.+|...|.+++|+|+++. .+.++++| ++|.+.+|.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~g~l~a~g-~~g~~~~~~~~ 418 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDES-NGEVLEVG-KNNFCALYNLS 418 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSS-SCEEEEEE-TTTEEEEEESC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCC-cceEEEEc-CCceEEEEecc
Confidence 0 1112245678899999999999873 34567777 68999988764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=257.49 Aligned_cols=276 Identities=11% Similarity=0.054 Sum_probs=215.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEcc-CCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP-SYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~-~~~ 176 (445)
...|.+++|+|++++|++++.|+.|+||++.............+|...|++++|+|++. .+++++.||.|++|++ ...
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 45699999999999999999999999999975432222233347999999999999988 8889999999999999 622
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecc--cCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC---------C
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---------G 245 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~---------~ 245 (445)
. ...+.+ |. ..|.+++|+| ++.|++++.| |.|++||+++ +
T Consensus 91 ~--------------------------~~~~~~~~~~-~~v~~l~~~~-~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 91 S--------------------------FQALTNNEAN-LGICRICKYG-DDKLIAASWD-GLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp S--------------------------EEECBSCCCC-SCEEEEEEET-TTEEEEEETT-SEEEEECHHHHTTBCEEEEE
T ss_pred c--------------------------eEeccccCCC-CceEEEEeCC-CCEEEEEcCC-CeEEEEcccccccccccccC
Confidence 1 123455 64 8999999999 9999999999 7999999987 6
Q ss_pred CceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCc---ccccCCCCCeeEEEECC-CCCeEEEEEcCCceE
Q 013338 246 LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS---EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTL 320 (445)
Q Consensus 246 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~---~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~ 320 (445)
+......+...|.+++|+|++ +++++.|+.|++||+++ +.. .....+...+.+++|+| +++++++++. ++.+
T Consensus 142 ~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i 218 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRV 218 (342)
T ss_dssp SCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEE
T ss_pred CeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcE
Confidence 665555688999999999887 99999999999999998 553 23446788999999999 9999987754 4555
Q ss_pred EEEEeccCCCCccccccCccccccccccCC---------C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGS---------Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
..|++...... ........+..| . .|.+++|+|++++|++++.| |.|++||+.+++.
T Consensus 219 ~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~ 285 (342)
T 1yfq_A 219 AVEFFDDQGDD-------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD------GIISCWNLQTRKK 285 (342)
T ss_dssp EEEECCTTCCS-------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEE
T ss_pred EEEEEcCCCcc-------cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC------ceEEEEcCccHhH
Confidence 55554321000 001223333333 3 79999999999999999988 8999999998765
Q ss_pred eeeeeeeeeeCC-CCCCCceeEeecCCCCCCCeEEEEecCee
Q 013338 391 ISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGF 431 (445)
Q Consensus 391 ~~~~~~~~~~~~-~~~v~~v~~spdg~~~~~~~l~~~~~~G~ 431 (445)
+ ..+.+| ...|++++ |+|++ |+.+..+|.
T Consensus 286 ~-----~~~~~~h~~~v~~~~--~~~~~-----l~s~s~Dg~ 315 (342)
T 1yfq_A 286 I-----KNFAKFNEDSVVKIA--CSDNI-----LCLATSDDT 315 (342)
T ss_dssp E-----EECCCCSSSEEEEEE--ECSSE-----EEEEEECTH
T ss_pred h-----hhhhcccCCCceEec--CCCCe-----EEEEecCCc
Confidence 4 467787 89999999 88774 777777887
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=267.91 Aligned_cols=307 Identities=12% Similarity=0.096 Sum_probs=214.0
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCC-Cc-ceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSE-GK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~-~~-~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+| ++++||+|+.|+.|+||++.... +. .......+|...|++++|+|++..+++++.|+.|++||+..
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 35699999999 99999999999999999986411 11 11122225899999999999988899999999999999951
Q ss_pred --CCCccccccccccccccccCCCCCceEEEEeeccc---CCCceeEEE--ECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 176 --PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALS--WGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+........ ..+..+..+ ....+.++. +++++++|++++.| |.|++||+++++..
T Consensus 143 ~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 143 YQQESEVKFLNC----------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-SRVIIFDIRTLERL 205 (437)
T ss_dssp EEETTEEEEEEE----------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT-SEEEEEETTTCCEE
T ss_pred ccCCceeecccc----------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCeee
Confidence 1111111111 122222211 236778877 67899999999999 79999999998775
Q ss_pred ee-ec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-CCCCCeeEEEEC----CCCCeEEEEEcCCce
Q 013338 249 PI-RR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWD----PEGRMILLAFAGSLT 319 (445)
Q Consensus 249 ~~-~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~s----p~~~~l~~~~~~~~~ 319 (445)
.. .. |...|++++|+|++++|++++.||.|++||+++++.. .+. .+...|++++|+ +++++|+++ ..++.
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~ 284 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTF 284 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEE
T ss_pred EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCc
Confidence 44 33 6789999999999999999999999999999998773 333 677789999665 457777765 34444
Q ss_pred EEEEEeccCCCCccccccC------------cccccc--ccccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEE
Q 013338 320 LGSIHFASKPPSLDAHLLP------------VDLPDI--VSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI 382 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~v 382 (445)
+..|++... ....... .....+ ..+.+ |. .|++++|+ ++++|++++.| +.|++
T Consensus 285 i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d------~~i~~ 354 (437)
T 3gre_A 285 LTIWNFVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT------SSIVM 354 (437)
T ss_dssp EEEEETTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG------TEEEE
T ss_pred EEEEEcCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC------CeEEE
Confidence 444443221 1100000 000000 01233 55 79999999 88999999888 99999
Q ss_pred EEccCCCeeeeeee--------------------------------eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe
Q 013338 383 YDARRTPLISLSLI--------------------------------GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 383 wd~~~~~~~~~~~~--------------------------------~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G 430 (445)
||+.+++....... .....|...|++++|+++. ...+|+.|-++|
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~---~~~~l~s~~~dG 431 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD---ETPLLVACDNSG 431 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS---SSEEEEEEETTS
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC---CceEEEEEcCCc
Confidence 99998765421110 0112388999999999982 234688888999
Q ss_pred eeEeee
Q 013338 431 FCCTYP 436 (445)
Q Consensus 431 ~v~~~~ 436 (445)
.|.+|.
T Consensus 432 ~I~iw~ 437 (437)
T 3gre_A 432 LIGIFQ 437 (437)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999873
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=249.10 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=196.6
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+|...|++++|+|+|++|++++.|++|+||++.... ..+...+.+|. ..|.+++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----------------------~~~~~~l~gH~-~~V~~v~ 60 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----------------------HKLIDTLTGHE-GPVWRVD 60 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------------------BCCCEEECCCS-SCEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------------------cEEEEEEcccc-CCeEEEE
Confidence 35799999999999999999999999999999986221 11345577886 8999999
Q ss_pred ECC--CCCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc---c
Q 013338 220 WGP--DGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---E 289 (445)
Q Consensus 220 ~sp--~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~---~ 289 (445)
|+| ++++|++++.| |+|++||+++++. ..+..|...|.+++|+|+ +++|++++.|+.|++||+++... .
T Consensus 61 ~s~~~~g~~l~s~s~D-~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 139 (297)
T 2pm7_B 61 WAHPKFGTILASCSYD-GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139 (297)
T ss_dssp ECCGGGCSEEEEEETT-TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred ecCCCcCCEEEEEcCC-CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence 986 38999999999 7999999988742 334567889999999997 89999999999999999987642 3
Q ss_pred cccCCCCCeeEEEECCC-------------CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce
Q 013338 290 PWSSTSGFVTGATWDPE-------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 355 (445)
.+..|...|.+++|+|+ +++|++++ .++.+..|++..... .......+.+|. .|.+
T Consensus 140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~---------~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRD 209 (297)
T ss_dssp EEECCSSCEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEE
T ss_pred eeecccCccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCc---------eEEEEEEecCCCCceEE
Confidence 45688999999999997 45777654 445566665532110 112345678888 8999
Q ss_pred EEeCCCC---CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 356 IAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 356 ~~~sp~g---~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
++|+|++ ++|++++.| ++|++||+++.............+|...|.+++|+|+|++ |+.+..+|.|
T Consensus 210 v~~sp~~~~~~~las~s~D------~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----las~~~D~~v 278 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKV 278 (297)
T ss_dssp EEECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEETTSCE
T ss_pred EEECCCCCCceEEEEEECC------CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-----EEEEcCCCcE
Confidence 9999995 899999988 9999999986432100001112467888999999999885 7888899999
Q ss_pred Eeeeee
Q 013338 433 CTYPLI 438 (445)
Q Consensus 433 ~~~~~~ 438 (445)
.+|+..
T Consensus 279 ~lw~~~ 284 (297)
T 2pm7_B 279 TLWKEN 284 (297)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999865
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=285.24 Aligned_cols=278 Identities=12% Similarity=0.142 Sum_probs=224.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|+|++||+++.||.|+||++. +++....+ .+|...|++++|+|+++.+++++.||.|++|++....
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-- 88 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYE--TQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-- 88 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECC--CCceEEEE-ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--
Confidence 459999999999999999999999999985 46655555 4799999999999999899999999999999998322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v 257 (445)
....+.+|. ..|++++|+|++++|++++.| |.|++||+.++.. ..+..|...|
T Consensus 89 -----------------------~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~v 143 (814)
T 3mkq_A 89 -----------------------KVVDFEAHP-DYIRSIAVHPTKPYVLSGSDD-LTVKLWNWENNWALEQTFEGHEHFV 143 (814)
T ss_dssp -----------------------EEEEEECCS-SCEEEEEECSSSSEEEEEETT-SEEEEEEGGGTSEEEEEEECCSSCE
T ss_pred -----------------------EEEEEecCC-CCEEEEEEeCCCCEEEEEcCC-CEEEEEECCCCceEEEEEcCCCCcE
Confidence 344566675 899999999999999999999 7999999988733 3455688999
Q ss_pred eEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-cccc-CCCCCeeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 258 SILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 258 ~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.+++|+| +++.|++++.||.|++||+.+++. ..+. .+...+.+++|+| +++++++++. ++.+..|++.
T Consensus 144 ~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~i~~~d~~------ 216 (814)
T 3mkq_A 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQ------ 216 (814)
T ss_dssp EEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT-TSEEEEEETT------
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC-CCEEEEEECC------
Confidence 9999999 889999999999999999988766 2333 3447899999999 8999887643 3444444432
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
....+..+.+|. .|.+++|+|++++|++++.| |.|++||+.+++.. ..+..|...+++++|
T Consensus 217 -------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~ 278 (814)
T 3mkq_A 217 -------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIAT 278 (814)
T ss_dssp -------TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCSEE-----EEECCSSSSEEEEEE
T ss_pred -------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEE-----EEeecCCCcEEEEEE
Confidence 344566777787 89999999999999999988 89999999987655 466778889999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+|+|+. -+++++.+++ +.++.
T Consensus 279 ~~~~~~---~~~~~~~~~~-~~~~~ 299 (814)
T 3mkq_A 279 HPTGRK---NYIASGFDNG-FTVLS 299 (814)
T ss_dssp CTTCGG---GEEEEEETTE-EEEEE
T ss_pred ccCCCc---eEEEEEeCCC-EEEEE
Confidence 999863 1366665444 44443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=256.60 Aligned_cols=265 Identities=12% Similarity=0.176 Sum_probs=212.3
Q ss_pred cccccccccccccccccccCCCcCCcCc------------------------CCeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.....|.||.+.+....+.|....+..+ ..|.+++|+|+|.+||+|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3456788999888888887765444322 2478999999999999999999999999
Q ss_pred ccCCCC----cceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEE
Q 013338 128 YEDSEG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL 203 (445)
Q Consensus 128 ~~~~~~----~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (445)
+..... .....+ ..|...|.+++|+|++..+++++.|++|++||+... .+
T Consensus 135 ~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------------------------~~ 188 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------------------------QL 188 (354)
T ss_dssp CCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------CE
T ss_pred Eeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------------------------eE
Confidence 864321 122223 469999999999999889999999999999999832 24
Q ss_pred EEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEE
Q 013338 204 VDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYL 280 (445)
Q Consensus 204 ~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i 280 (445)
+..+.+|. ..|.+++|+| ++++|++++.| |.|++||+++++... +..|...|.+++|+|++++|++++.|++|++
T Consensus 189 ~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~D-g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 189 LQSFHGHG-ADVLCLDLAPSETGNTFVSGGCD-KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266 (354)
T ss_dssp EEEEECCS-SCEEEEEECCCSSCCEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEcCCC-CCeEEEEEEeCCCCCEEEEEeCC-CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence 55677785 7999999987 57899999999 799999999988754 4568899999999999999999999999999
Q ss_pred EeCCCCCcccc-c--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE
Q 013338 281 WETNTWTSEPW-S--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 356 (445)
Q Consensus 281 wd~~~~~~~~~-~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 356 (445)
||+++.+.... . .+...+.+++|+|++++|+++.. ++.+..|++. ....+..+.+|. .|+++
T Consensus 267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~-------------~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVL-------------KGSRVSILFGHENRVSTL 332 (354)
T ss_dssp EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETT-------------TCSEEEEECCCSSCEEEE
T ss_pred EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECC-------------CCceEEEEECCCCcEEEE
Confidence 99998765322 2 23346889999999999997743 3445555432 344566778888 89999
Q ss_pred EeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 357 AWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 357 ~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+|+|+|++|++++.| ++|++|+
T Consensus 333 ~~spdg~~l~sgs~D------~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCSGSWD------HTLRVWA 354 (354)
T ss_dssp EECTTSSCEEEEETT------SEEEEEC
T ss_pred EECCCCCEEEEEcCC------CCEEecC
Confidence 999999999999988 9999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=265.49 Aligned_cols=278 Identities=15% Similarity=0.146 Sum_probs=212.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+++++|+|+|++|++++.|+.+++|++.. ++....+ ..| ..+....|+|+++.+++++.|+.|++||+...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~--~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---- 129 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTII--RDGSKML-KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---- 129 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCS--EETTTTS-CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecc--cceeeEE-ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----
Confidence 356899999999999999999999999854 3322222 223 44555678999889999999999999998722
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSI 259 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~ 259 (445)
.+...+.+|. ..|++++|+|++++|++++.| |.|++||+.+++.. .+..|...|.+
T Consensus 130 ---------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~~v~~ 186 (420)
T 3vl1_A 130 ---------------------LQREIDQAHV-SEITKLKFFPSGEALISSSQD-MQLKIWSVKDGSNPRTLIGHRATVTD 186 (420)
T ss_dssp ---------------------EEEEETTSSS-SCEEEEEECTTSSEEEEEETT-SEEEEEETTTCCCCEEEECCSSCEEE
T ss_pred ---------------------ceeeeccccc-CccEEEEECCCCCEEEEEeCC-CeEEEEeCCCCcCceEEcCCCCcEEE
Confidence 2344456775 899999999999999999999 79999999988764 45668899999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc---CC---------------------CCCeeEEEECCCCCeEEEEE
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---ST---------------------SGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~---~~---------------------~~~v~~~~~sp~~~~l~~~~ 314 (445)
++|+|++++|++++.|+.|++||+++++.. .+. .+ ...+.+++|+|++++|+++.
T Consensus 187 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 999999999999999999999999988762 222 12 34556667789999998764
Q ss_pred cCCceEEEEEeccCCCCccccccCccccccccc-cCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ++.+..|++. ....+..+ ..|. .|.+++|+|+++ +|++++.| |.|++||+++++..
T Consensus 267 ~-dg~i~i~d~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 267 V-SGVITVHNVF-------------SKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN------GMLAQWDLRSPECP 326 (420)
T ss_dssp T-TSCEEEEETT-------------TCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSC
T ss_pred C-CCeEEEEECC-------------CCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC------CeEEEEEcCCCcCc
Confidence 3 3445555542 22223333 3455 899999999999 99999988 99999999986542
Q ss_pred eeeeeeeeeC-CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 392 SLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 392 ~~~~~~~~~~-~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
+..+.+ |...|+++. +|+++ +|+.+..+|.|.+|++.-
T Consensus 327 ----~~~~~~~~~~~v~~~~-~~~~~-----~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 327 ----VGEFLINEGTPINNVY-FAAGA-----LFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp ----SEEEEESTTSCEEEEE-EETTE-----EEEEETTTEEEEEEEECC
T ss_pred ----hhhhhccCCCCceEEE-eCCCC-----EEEEecCCccEEEEeccC
Confidence 234554 666777775 45654 577888999999999764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=250.19 Aligned_cols=246 Identities=16% Similarity=0.261 Sum_probs=181.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-----CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
...|++++|+|++++||+|+.|++|+||++.... .+... ...+|...|++++|+|++..|++++.|+.|++||+
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLA-IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEE-EEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEE-EEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 4569999999999999999999999999985321 12222 33589999999999999999999999999999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--c-eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--G-TPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~-~~~ 250 (445)
...+. .+.++..+.+|. ..|.+++|+|++++|++++.| |+|++||..++. . ..+
T Consensus 137 ~~~~~---------------------~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D-~~i~iW~~~~~~~~~~~~~ 193 (330)
T 2hes_X 137 DESGE---------------------EYECISVLQEHS-QDVKHVIWHPSEALLASSSYD-DTVRIWKDYDDDWECVAVL 193 (330)
T ss_dssp CTTCC---------------------CCEEEEEECCCS-SCEEEEEECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEE
T ss_pred cCCCC---------------------CeEEEEEeccCC-CceEEEEECCCCCEEEEEcCC-CeEEEEECCCCCeeEEEEc
Confidence 52211 224566678886 899999999999999999999 799999998763 2 345
Q ss_pred ecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCC--------c-ccccC-CCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 251 RRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT--------S-EPWSS-TSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~--------~-~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
..|...|.+++|+|+ +.+|++++.|++|++||++++. . ..+.. |...|.+++|++++ +|++++ .++
T Consensus 194 ~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~-~dg 271 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG-ADG 271 (330)
T ss_dssp CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE-TTS
T ss_pred cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe-CCC
Confidence 578899999999998 7789999999999999997642 1 22333 88899999999765 566553 445
Q ss_pred eEEEEEeccCCCCccccccCcccccc-ccccCCC--ccceEEeCC--CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ--GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~sp--~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.+..|+.... ....+ ....+|. .|.+++|+| ++++|++++.| ++|++||++.
T Consensus 272 ~v~iw~~~~~-----------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D------g~v~~W~~~~ 328 (330)
T 2hes_X 272 VLAVYEEVDG-----------EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD------GIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEETT-----------EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT------SEEEEEEC--
T ss_pred EEEEEEcCCC-----------ceEEEeccccccccceEEEEEEecCCCceEEEEecCC------CcEEEEEecc
Confidence 5565554211 00111 2234555 699999999 78999999988 9999999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=242.40 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=216.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+..++|+||+++ +||+| .|++|+|||++ +++.+..+. .+|...|++++|+|+++.+++++.|+.|++|++...
T Consensus 26 ~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~--tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-- 99 (318)
T 4ggc_A 26 YYLNLVDWSSGN-VLAVA-LDNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-- 99 (318)
T ss_dssp TTCBCEEECTTS-EEEEE-ETTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--
T ss_pred ccceEEEECCCC-EEEEE-eCCEEEEEECC--CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--
Confidence 346789999986 67765 59999999985 466655543 468889999999999999999999999999999822
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGG 256 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~ 256 (445)
.++..+.+|. ..+.++. +++..+++++.+ +.+++|+...... ..+..|...
T Consensus 100 -----------------------~~~~~~~~h~-~~~~~~~--~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 100 -----------------------KRLRNMTSHS-ARVGSLS--WNSYILSSGSRS-GHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp -----------------------EEEEEEECCS-SCEEEEE--EETTEEEEEETT-SEEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------eeEEEecCcc-ceEEEee--cCCCEEEEEecC-CceEeeecCCCceeEEEEcCccCc
Confidence 3556677775 5666554 466789999988 7999999887654 345678899
Q ss_pred eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 257 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
+..+++++++++|++++.|+.|++||+++++.. ....+...|.++.++|++..++..... ..++.+++|+..
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~-- 229 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVC-- 229 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETT--
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEecc--
Confidence 999999999999999999999999999987642 234677889999999988766532221 223455555432
Q ss_pred ccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 332 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
..........+..+..+.|+|+++.+++++... |+.|++||+++++.+ ..+.+|.+.|++++|
T Consensus 230 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~----d~~i~iwd~~~~~~~-----~~l~gH~~~V~~l~~ 292 (318)
T 4ggc_A 230 --------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRVLSLTM 292 (318)
T ss_dssp --------TCCEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCEEEEEE
T ss_pred --------cccccccccceeeeeeeeecccccceEEEEEcC----CCEEEEEECCCCcEE-----EEEcCCCCCEEEEEE
Confidence 222222233333799999999999998876321 289999999987765 578899999999999
Q ss_pred eecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 412 SFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 412 spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+|||++ |+.|-.||.|.+|++.
T Consensus 293 spdg~~-----l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 293 SPDGAT-----VASAAADETLRLWRCF 314 (318)
T ss_dssp CTTSSC-----EEEEETTTEEEEECCS
T ss_pred cCCCCE-----EEEEecCCeEEEEECC
Confidence 999886 6777789999999986
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=277.39 Aligned_cols=323 Identities=11% Similarity=0.118 Sum_probs=224.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+| |++|++++.|++|+|||+.. ++.+..+. |...|++++|+|++..+++++.||.|++||+.....
T Consensus 58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--QKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp CCCEEEEEEET-TTEEEEEETTCEEEEEETTT--CSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCEEEEEEcC-CCEEEEEECcCeEEEEECCC--CcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 45799999999 88999999999999999954 55555553 678899999999999999999999999999985432
Q ss_pred cc----------ccccccccccccccCCCC-----------Cce-------EEEEeeccc-----------------CCC
Q 013338 179 AA----------SVRSGAASFLGALSRGPG-----------TRW-------TLVDFLRSQ-----------------NGE 213 (445)
Q Consensus 179 ~~----------~~~~~~~~~~~~~~~~~~-----------~~~-------~~~~~~~~~-----------------~~~ 213 (445)
.. ....++...+..+++.+. +.. .+...+..| +..
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred ccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 10 001122223333333221 111 123334433 125
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee------c-------------CCCCeeE---------------
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR------R-------------GFGGLSI--------------- 259 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~------~-------------~~~~v~~--------------- 259 (445)
.|.+++|+|+|++|++++.| |.|++||+++++..... . +...|++
T Consensus 213 ~V~~v~fspdg~~lasgs~D-g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll 291 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHED-NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL 291 (902)
T ss_dssp CEEEEEECTTSSEEEEEETT-CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECC-CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEE
Confidence 79999999999999999999 79999998654321100 0 0001111
Q ss_pred --------------------------------------------------------------------------------
Q 013338 260 -------------------------------------------------------------------------------- 259 (445)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (445)
T Consensus 292 ~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s 371 (902)
T 2oaj_A 292 ISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLIL 371 (902)
T ss_dssp EEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEE
T ss_pred EeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEc
Confidence
Q ss_pred ---------------------------------------------------------------------EEEcCCCCEEE
Q 013338 260 ---------------------------------------------------------------------LKWSPTGDYFF 270 (445)
Q Consensus 260 ---------------------------------------------------------------------~~~sp~g~~l~ 270 (445)
++|+|++++|+
T Consensus 372 ~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~la 451 (902)
T 2oaj_A 372 GNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFI 451 (902)
T ss_dssp TTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEE
T ss_pred CCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEE
Confidence 12245667888
Q ss_pred EEecCCeEEEEeCCCCCccc---c---------cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC-------
Q 013338 271 AAKFDGTFYLWETNTWTSEP---W---------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS------- 331 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~~---~---------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~------- 331 (445)
+|+.|++|++||+.+++... + ..|...|++++|+|++++||+++ .++.+..|++......
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~ 530 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPE 530 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC--------
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCC
Confidence 88889999999988775421 1 16778999999999999999775 4466777766533100
Q ss_pred -cc----cc---c-----------------cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 332 -LD----AH---L-----------------LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 332 -~~----~~---~-----------------~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.. .. + +.....++..+.+|. .|++++||||| +||+|+.| ++|+|||+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D------~tv~lwd~ 603 (902)
T 2oaj_A 531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA------GSLMLIDR 603 (902)
T ss_dssp -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT------SEEEEEET
T ss_pred CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC------CcEEEEEC
Confidence 00 00 0 000012356677888 89999999999 99999988 99999999
Q ss_pred cCCCeeeeeeeeeee-CCCCCCCceeEe-----ecCCCCCCCeEEEEecCeeeEeeee
Q 013338 386 RRTPLISLSLIGFIR-GPGDNPKPVAFS-----FHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 386 ~~~~~~~~~~~~~~~-~~~~~v~~v~~s-----pdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+++.++....+..+. +|...|++++|| |||. .+.+|+.|..+|.|.+|++
T Consensus 604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EEEEEEEEETTSEEEEEEE
T ss_pred CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cceEEEEEecCCcEEEEEE
Confidence 877665322223454 899999999999 8862 2346899999999999998
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=244.16 Aligned_cols=268 Identities=12% Similarity=0.232 Sum_probs=205.7
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc-ceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+|++++||+++.|+.|+||++...... .......+|...|++++|+| ++..|++++.|+.|++||+..
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 346999999999999999999999999999753332 12223357999999999999 578888999999999999984
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCceee---
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPI--- 250 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~--- 250 (445)
...... ...+.....+..|. ..|.+++|+|+ +++|++++.| |.|++||+++++....
T Consensus 91 ~~~~~~----------------~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-g~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 91 DQEECS----------------GRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGND-GILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp TSCTTS----------------SCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-CEEEEEECSSTTCTTCCEE
T ss_pred Cccccc----------------ccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCC-CcEEEecCCChHHhccccc
Confidence 432211 12345677788886 89999999999 9999999999 7999999988754221
Q ss_pred -----------ecCCCCeeEEEEcCC---CCEEEEEecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCC----Ce
Q 013338 251 -----------RRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RM 309 (445)
Q Consensus 251 -----------~~~~~~v~~~~~sp~---g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~----~~ 309 (445)
..+...+.+++|+|+ +.+|++++.++.+.+|+...++. ..+..|...|++++|+|++ ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 145678999999997 99999999999998888887764 4566889999999999998 66
Q ss_pred EEEEEcCCceEEEEEeccCCCCccc--------------------------------cc-cCccccccccccCCC-ccce
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDA--------------------------------HL-LPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~-~~~~~~~~~~~~~~~-~v~~ 355 (445)
|+++ +.++.+..|++......... .. .......+..+.+|. .|++
T Consensus 233 l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 311 (351)
T 3f3f_A 233 IATG-CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS 311 (351)
T ss_dssp EEEE-ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred EEEE-cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence 7755 45566677766542110000 00 000224556677888 8999
Q ss_pred EEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 356 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 356 ~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++|+|++++|++++.| |.|++|++.+++..
T Consensus 312 ~~~s~~~~~l~s~~~d------g~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDD------GKVRLWKATYSNEF 341 (351)
T ss_dssp EEECSSSCCEEEEETT------SCEEEEEECTTSCE
T ss_pred EEEcCCCCEEEEecCC------CcEEEEecCcCcch
Confidence 9999999999999988 99999999987654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=249.79 Aligned_cols=253 Identities=14% Similarity=0.166 Sum_probs=193.1
Q ss_pred EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
....+|.+.|++++|+|+|+.|++++.|++|+|||+... ...+...+.+|. ..|.+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------------------~~~~~~~l~gH~-~~V~~ 62 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------------------GQILIADLRGHE-GPVWQ 62 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------------------CcEEEEEEcCCC-ccEEE
Confidence 344579999999999999999999999999999998722 112456678886 89999
Q ss_pred EEECC--CCCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc--
Q 013338 218 LSWGP--DGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-- 288 (445)
Q Consensus 218 ~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-- 288 (445)
++|+| ++++|++++.| |+|++||++++.. ..+..|...|.+++|+|+ +.+|++++.|++|++||++++..
T Consensus 63 v~~~~~~~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 63 VAWAHPMYGNILASCSYD-RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEECCGGGSSCEEEEETT-SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEeCCCCCCCEEEEEECC-CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 99986 48999999999 7999999998743 234568899999999998 88999999999999999987632
Q ss_pred --ccccCCCCCeeEEEECCC-----------------CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 289 --EPWSSTSGFVTGATWDPE-----------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 289 --~~~~~~~~~v~~~~~sp~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
..+..|...+.+++|+|+ +++|+++ +.++.+..|++.... ....+..+.+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~----------~~~~~~~l~~ 210 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEEDG----------QWKEEQKLEA 210 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-BTTSBCCEEEECTTS----------CEEEEECCBC
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-cCCCeEEEEEeCCCC----------ccceeeeccc
Confidence 345578889999999998 3566654 445555555542110 1134567788
Q ss_pred CC-ccceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEE
Q 013338 350 SQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 424 (445)
Q Consensus 350 ~~-~v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~ 424 (445)
|. .|.+++|+|++ ++|++++.| ++|++|++++..... .....+.+|...|++++|+|+|++ |+
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D------~~v~iw~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~-----la 278 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQD------GRVFIWTCDDASSNT-WSPKLLHKFNDVVWHVSWSITANI-----LA 278 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETT------CEEEEEECSSTTCCC-CBCCEEEECSSCEEEEEECTTTCC-----EE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCC------CeEEEEEccCccccc-hhhhhhhcCCCcEEEEEEcCCCCE-----EE
Confidence 88 89999999987 889999988 999999997632100 011234568889999999999875 78
Q ss_pred EEecCeeeEeeeee
Q 013338 425 VCWSSGFCCTYPLI 438 (445)
Q Consensus 425 ~~~~~G~v~~~~~~ 438 (445)
.+..+|.|.+|+..
T Consensus 279 s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 279 VSGGDNKVTLWKES 292 (316)
T ss_dssp EEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEEC
Confidence 88899999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=249.81 Aligned_cols=248 Identities=16% Similarity=0.246 Sum_probs=197.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|.+++|+|++++||+++.|+.|+||++...+++....+ .+|...|++++|+++ +..+++++.|+.|++||+...
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~- 89 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG- 89 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-
Confidence 4599999999999999999999999999974444444444 579999999999977 788999999999999999822
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCc---eeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~ 252 (445)
.+.....+..|. ..|.+++|+|+ +++|++++.| |.|++||+..+.. ..+..
T Consensus 90 ----------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 90 ----------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD-GKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp ----------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEECCTTSCCCEEEEEC
T ss_pred ----------------------ceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCC-CcEEEEecCCCCceeeEEecC
Confidence 233555667775 89999999999 9999999999 7999999988743 34557
Q ss_pred CCCCeeEEEEcC-------------CCCEEEEEecCCeEEEEeCCCCCc-----ccccCCCCCeeEEEECCC---CCeEE
Q 013338 253 GFGGLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp-------------~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---~~~l~ 311 (445)
|...|.+++|+| ++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+ +++|+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 889999999999 699999999999999999987653 345678999999999999 78887
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+++ .++.+..|++...... ....+.....|. .|.+++|+|+|++|++++.| |.|++|++..+
T Consensus 226 s~~-~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~ 288 (379)
T 3jrp_A 226 SVS-QDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENLE 288 (379)
T ss_dssp EEE-TTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS------SSEEEEEEEET
T ss_pred EEe-CCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC------CcEEEEeCCCC
Confidence 664 4455666665432100 011122223355 79999999999999999987 89999999843
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=257.32 Aligned_cols=276 Identities=13% Similarity=0.181 Sum_probs=207.7
Q ss_pred cccccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
.....|.||.+.+....+.|....+..+. .|.+++|+|+|++||+|+.|+.++||+
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 34567889988888888887765554321 378899999999999999999999999
Q ss_pred ccCCC---C-cceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceE
Q 013338 128 YEDSE---G-KDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT 202 (445)
Q Consensus 128 ~~~~~---~-~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
+.... + ........+|.+.|.++.|+|++. .+++++.|++|++||+........+...
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~----------------- 199 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE----------------- 199 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------------
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------------
Confidence 86421 1 112223358999999999999754 5888888999999999844322211100
Q ss_pred EEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCC-Cc-eeeecCCCCeeEEEEcCCCCEEEEEecCCeEE
Q 013338 203 LVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFY 279 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~ 279 (445)
...+|. ..|.+++|++ ++++|++++.| |+|++||++.. .. ..+..|...|.+++|+|++++|++++.|++|+
T Consensus 200 ---~~~~h~-~~v~~~~~~~~~~~~l~sgs~D-~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 200 ---FPSGHT-ADVLSLSINSLNANMFISGSCD-TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp ---SSSSCC-SCEEEEEECSSSCCEEEEEETT-SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred ---cCCCCc-cCeEEEEeecCCCCEEEEEECC-CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence 013454 7899999987 88999999999 79999999743 33 45667899999999999999999999999999
Q ss_pred EEeCCCCCccc-ccC-------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc----
Q 013338 280 LWETNTWTSEP-WSS-------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---- 347 (445)
Q Consensus 280 iwd~~~~~~~~-~~~-------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 347 (445)
+||+++++... +.. +...+++++|+|+|++|+++.. ++.+..|++. ..+.+..+
T Consensus 275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~vwd~~-------------~~~~~~~~~~~~ 340 (380)
T 3iz6_a 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-NGDCYVWDTL-------------LAEMVLNLGTLQ 340 (380)
T ss_dssp EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-TSCEEEEETT-------------TCCEEEEECCSC
T ss_pred EEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-CCCEEEEECC-------------CCceEEEEeccc
Confidence 99999987632 221 2235899999999999997643 4455555432 12222222
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+|. .|++++|+|+|++|++|+.| ++|++|++...+
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D------~~i~iW~~~~~~ 377 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWD------KNLKIWAFSGHR 377 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTT------SCEEEEECCSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCC------CCEEEEecCCCc
Confidence 4677 89999999999999999988 999999998643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=252.00 Aligned_cols=279 Identities=15% Similarity=0.209 Sum_probs=205.2
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~ 176 (445)
....++++|+...++ +++.||.|+||+++.. ++. ......+|...|++++|+| ++..|++++.||.|++|++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 455789999876554 4788999999998532 221 1222357999999999999 8778888888999999999854
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccCCCceee---ec
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI---RR 252 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~~~~~~~---~~ 252 (445)
+...... .....+.+|. ..|.+++|+|++ ++|++++.| |.|++||+.+++.... ..
T Consensus 115 ~~~~~~~------------------~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~ 174 (402)
T 2aq5_A 115 GLVLPLR------------------EPVITLEGHT-KRVGIVAWHPTAQNVLLSAGCD-NVILVWDVGTGAAVLTLGPDV 174 (402)
T ss_dssp CCSSCBC------------------SCSEEEECCS-SCEEEEEECSSBTTEEEEEETT-SCEEEEETTTTEEEEEECTTT
T ss_pred CCccccC------------------CceEEecCCC-CeEEEEEECcCCCCEEEEEcCC-CEEEEEECCCCCccEEEecCC
Confidence 3322111 1234466775 899999999998 689999988 7999999998877554 45
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cc-cCCCCC-eeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW-SSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~-~~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
|...|.+++|+|++++|++++.|+.|++||+++++.. .+ ..|... +.++.|+|++++++++... ..++.+.+|+..
T Consensus 175 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~ 253 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSR-MSERQVALWDTK 253 (402)
T ss_dssp CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECT-TCCEEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccC-CCCceEEEEcCc
Confidence 7899999999999999999999999999999998773 44 466655 8999999999988876421 123455555432
Q ss_pred CCccccccCccccccc--cccCCCccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 330 PSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
.. ...+. .+..+..+.+++|+|++++|++++ .| +.|++||+.+++.. ...+..+. |...|
T Consensus 254 ~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d------g~i~i~d~~~~~~~-~~~l~~~~-~~~~v 316 (402)
T 2aq5_A 254 HL---------EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD------SSIRYFEITSEAPF-LHYLSMFS-SKESQ 316 (402)
T ss_dssp BC---------SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC------SCEEEEEECSSTTC-EEEEEEEC-CSSCC
T ss_pred cc---------cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC------CeEEEEEecCCCcc-eEeecccc-cCCcc
Confidence 10 11111 222233799999999999998665 45 89999999987742 11122222 67899
Q ss_pred CceeEeecCCCC
Q 013338 407 KPVAFSFHDKFK 418 (445)
Q Consensus 407 ~~v~~spdg~~~ 418 (445)
.+++|+|++.+.
T Consensus 317 ~~~~~sp~~~~~ 328 (402)
T 2aq5_A 317 RGMGYMPKRGLE 328 (402)
T ss_dssp SEEEECCGGGSC
T ss_pred cceEEecccccc
Confidence 999999999873
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=287.19 Aligned_cols=279 Identities=13% Similarity=0.184 Sum_probs=228.1
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|+|++||+|+.||.|+||++. +++....+ .+|...|.+++|+|+++.+++++.|+.|++||+...
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~--~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-- 689 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAE--TGEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-- 689 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECC--CCCEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--
Confidence 4579999999999999999999999999995 46655555 579999999999999999999999999999999832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
.++..+.+|. ..|.+++|+| ++..+++++.| |.|++||+.+++... +..|..
T Consensus 690 -----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 690 -----------------------KLVHTYDEHS-EQVNCCHFTNKSNHLLLATGSND-FFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp -----------------------CEEEEEECCS-SCEEEEEECSSSSCCEEEEEETT-SCEEEEETTSSSEEEEECCCSS
T ss_pred -----------------------ceEEEEcCCC-CcEEEEEEecCCCceEEEEEeCC-CeEEEEECCCcchhheecCCCC
Confidence 2455567775 8999999999 55578888888 799999999987654 557889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-c-------------cCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W-------------SSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~-------------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.|.+++|+|++++|++++.||.|++||+++++... + ......+.+++|+|+++.++++.. +.+.
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~ 822 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVL 822 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEE
Confidence 99999999999999999999999999998876421 1 122346889999999999998764 4445
Q ss_pred EEEeccCCCCccccccCcccccccccc-CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
.|++. ....+..+. +|. .|.+++|+|+++++++++.+ +.|++||+.++... ..+
T Consensus 823 ~~d~~-------------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~ 878 (1249)
T 3sfz_A 823 LFDIH-------------TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ------YCVELWNIDSRLKV-----ADC 878 (1249)
T ss_dssp EEETT-------------TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS------SCEEEEETTTTEEE-----EEE
T ss_pred EEEec-------------CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCcee-----eec
Confidence 44432 222333333 566 89999999999999999887 89999999986554 467
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+|...|++++|+|+|++ ++.+..+|.|.+|++.
T Consensus 879 ~~h~~~v~~v~~spdg~~-----l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSS-----FLTASDDQTIRVWETK 912 (1249)
T ss_dssp CCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEHH
T ss_pred CCCccceEEEEECCCCCE-----EEEEeCCCeEEEEEcc
Confidence 899999999999999874 6777789999999854
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=246.22 Aligned_cols=281 Identities=11% Similarity=0.129 Sum_probs=211.9
Q ss_pred cCCeeEEEEccC---CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 99 EVDLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~---g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
...|++++|+|+ |++|++|+.|+.|+||+++.. +........+|...|++++|+|+++.|++++.|+.|++||+..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT-SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC-CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 346999999999 699999999999999999642 3444344457999999999999988999999999999999983
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
.. +.. +..|. ..|.+++| +|++++|++++.| |.|++||+++++.......
T Consensus 118 ~~-------------------------~~~-~~~~~-~~v~~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 118 NQ-------------------------AIQ-IAQHD-APVKTIHWIKAPNYSCVMTGSWD-KTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp TE-------------------------EEE-EEECS-SCEEEEEEEECSSCEEEEEEETT-SEEEEECSSCSSCSEEEEC
T ss_pred CC-------------------------cee-ecccc-CceEEEEEEeCCCCCEEEEccCC-CcEEEEECCCCcEEEEEec
Confidence 21 111 34454 89999999 9999999999999 7999999999887766666
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccCCCCCeeEEEECCCCCe----EEEEEcCCceEEEEEec
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRM----ILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~~~~----l~~~~~~~~~~~~~~~~ 326 (445)
...+.++.+. ...+++++.++.+++|+++..... ....+...+.++++.++... ++++ ..++.+..|++.
T Consensus 170 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~ 246 (368)
T 3mmy_A 170 PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG-SIEGRVAIHYIN 246 (368)
T ss_dssp SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE-ETTSEEEEEESS
T ss_pred CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe-cCCCcEEEEecC
Confidence 6677777776 458888999999999999886542 12234445666666655543 6655 344555555543
Q ss_pred cCCCCccccccCccccccccccCCC-------------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
... ....+..+..|. .|++++|+|++++|++++.| |.|++||+.+++.+
T Consensus 247 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~~-- 308 (368)
T 3mmy_A 247 PPN----------PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD------GRFSFWDKDARTKL-- 308 (368)
T ss_dssp CSC----------HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEE--
T ss_pred CCC----------ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC------CeEEEEECCCCcEE--
Confidence 211 002233344443 59999999999999999988 99999999987654
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.+|...|++++|+|+|++ |+.+.++|....+.+
T Consensus 309 ---~~~~~~~~~v~~~~~s~~g~~-----l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 309 ---KTSEQLDQPISACCFNHNGNI-----FAYASSYDWSKGHEF 344 (368)
T ss_dssp ---EECCCCSSCEEEEEECTTSSC-----EEEEECCCSTTCGGG
T ss_pred ---EEecCCCCCceEEEECCCCCe-----EEEEecccccccccc
Confidence 467789999999999999886 677767776555443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=275.53 Aligned_cols=320 Identities=11% Similarity=0.115 Sum_probs=216.9
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|++++||+|+.||.|+||+.. +.+. .....|...|++++|+| +++|++++.|+.|++||+.....
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~--~~~~--~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ--QVEV--VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECST--TCEE--EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCC--CcEE--EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 3569999999999999999999999999974 2332 22345888999999999 67889999999999999986544
Q ss_pred ccccccccccccccccCCCC----------CceEEEE-------------------eecccCCCceeEEEECCC-CCeEE
Q 013338 179 AASVRSGAASFLGALSRGPG----------TRWTLVD-------------------FLRSQNGEQITALSWGPD-GRYLA 228 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-------------------~~~~~~~~~v~~~~~sp~-~~~l~ 228 (445)
...+. ....+..+.+.++ +...+++ .+.+|. ..|.+++|+|+ +..|+
T Consensus 92 ~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 92 LTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-SPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-CCCCEEEEETTEEEEEE
T ss_pred EEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC-CCeEEEEEccCCCCEEE
Confidence 33332 1112222222222 2222221 224454 79999999996 46788
Q ss_pred EEEecCCeEEEEEccCCCceeeec-C------------------CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 229 SASYESSSFTIWDVAQGLGTPIRR-G------------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~~~~-~------------------~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
+++.| |.| +||+++++...... + ...|.+++|+|+|++|++++.|+.|++||+++++..
T Consensus 169 ~g~~d-g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 169 ISYEY-VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EECSS-CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEeCC-CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 88888 799 99999887654332 2 367999999999999999999999999999988763
Q ss_pred c---cc---C-------------CCCCeeEEEEC----CCCC-eEEEEEcCC----ceEEEEEec---------------
Q 013338 290 P---WS---S-------------TSGFVTGATWD----PEGR-MILLAFAGS----LTLGSIHFA--------------- 326 (445)
Q Consensus 290 ~---~~---~-------------~~~~v~~~~~s----p~~~-~l~~~~~~~----~~~~~~~~~--------------- 326 (445)
. +. . +...|++++|+ |++. .+++++..+ ..+..+.+.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 2 21 1 24479999995 5543 444443321 123333310
Q ss_pred -----------cC--C-------------C-----C-----------ccccccCcc-c----------------------
Q 013338 327 -----------SK--P-------------P-----S-----------LDAHLLPVD-L---------------------- 341 (445)
Q Consensus 327 -----------~~--~-------------~-----~-----------~~~~~~~~~-~---------------------- 341 (445)
.. . + . ....+++.. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 00 0 0 0 000111110 0
Q ss_pred -------------------cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee-ee-
Q 013338 342 -------------------PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FI- 399 (445)
Q Consensus 342 -------------------~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~-~~- 399 (445)
.....+.+|. .+.+++|+|++++|++|+.| ++|++||+.++.+.....+. .+
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D------gtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN------GSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT------SEEEEEESSCCTTTTTBCEEEEHH
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC------CcEEEEECCCccccCCceEEeech
Confidence 0011234455 56678889999999999998 99999999987532110010 11
Q ss_pred ----eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 400 ----RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 400 ----~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.+|...|++|+|+|||++ |++|..+|.|.+|++.-
T Consensus 481 ~~~~~~h~~~V~svafspdg~~-----LAsgs~DgtV~lwd~~~ 519 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETLE-----LAVSIETGDVVLFKYEV 519 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTTE-----EEEEETTSCEEEEEEEE
T ss_pred hhcCCCCCCceeEEEecCCCCe-----EEEEecCcEEEEEEecC
Confidence 178899999999999885 99999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=244.85 Aligned_cols=289 Identities=13% Similarity=0.146 Sum_probs=210.9
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEe----------cCCCCCeeEEEECc-CCCcEEEEecCC
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILT----------SDSQRDVKVLEWRP-NGGRSLSVGCKG 166 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~----------~~~~~~v~~l~~sp-d~~~l~~~~~dg 166 (445)
...|.+++|+| ++++||+++.||.|+||++............ .+|...|.+++|+| ++..+++++.|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 45799999999 9999999999999999999753322222110 24899999999999 656778888899
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC---CCeEEEEEecCCeEEEEEcc
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~vwd~~ 243 (445)
.|++||+.... ....+. + ...+.++.|+|. +.++++++.+ |.|++||++
T Consensus 123 ~i~iwd~~~~~-------------------------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~d~~ 174 (408)
T 4a11_B 123 TLKVWDTNTLQ-------------------------TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRG-PKVQLCDLK 174 (408)
T ss_dssp EEEEEETTTTE-------------------------EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESS-SSEEEEESS
T ss_pred eEEEeeCCCCc-------------------------cceecc-C-CCceeeeEeecCCCCCcEEEEEcCC-CeEEEEeCC
Confidence 99999998321 222233 2 368899999884 4489999988 799999999
Q ss_pred CCCce-eeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc--c---------------cccCCCCCeeEEEEC
Q 013338 244 QGLGT-PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--E---------------PWSSTSGFVTGATWD 304 (445)
Q Consensus 244 ~~~~~-~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~--~---------------~~~~~~~~v~~~~~s 304 (445)
+++.. .+..|...|.+++|+|+++ .|++++.||.|++||++++.. . ....|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 88764 4556889999999999998 488999999999999987652 1 124688899999999
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
|++++|++++. ++.+..|++...... ... .. ....... .+........+..+++++.+ +.|++|
T Consensus 255 ~~~~~l~~~~~-dg~i~vwd~~~~~~~---~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~ 319 (408)
T 4a11_B 255 SDGLHLLTVGT-DNRMRLWNSSNGENT---LVN--YG---KVCNNSKKGLKFTVSCGCSSEFVFVPYG------STIAVY 319 (408)
T ss_dssp TTSSEEEEEET-TSCEEEEETTTCCBC---CCC--CC---CCCCCCSSCCCCEECCSSSSCEEEEEET------TEEEEE
T ss_pred CCCCEEEEecC-CCeEEEEECCCCccc---eec--cc---cccccccccceeEEecCCCceEEEEecC------CEEEEE
Confidence 99999997743 345555554322110 000 00 0000111 22222223344556666666 899999
Q ss_pred EccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 384 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 384 d~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
|+.+++.+ ..+.+|...|++++|+|++++ |+.+..+|.|.+|++...
T Consensus 320 d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 320 TVYSGEQI-----TMLKGHYKTVDCCVFQSNFQE-----LYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp ETTTCCEE-----EEECCCSSCEEEEEEETTTTE-----EEEEETTSCEEEEEECC-
T ss_pred ECcCCcce-----eeeccCCCeEEEEEEcCCCCE-----EEEECCCCeEEEEeCCCC
Confidence 99987765 467889999999999999874 778889999999998643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=254.02 Aligned_cols=259 Identities=10% Similarity=0.127 Sum_probs=192.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|||||+++|+++.|++|+ +.. .++. + .+|...|++++|+|+| .++.+.+|+.+ ..
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~--~~~~---l-~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~ 77 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPK--YAKD---I-NCNSKNLFHVKEFPLE-------FENKLDFELAQ---QN 77 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EEC--CCSC---C-SSBGGGTEEEEEECCC-------CCCTTTTSCCC---SS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccc--ccce---e-cCCCccEEEEEECCCC-------CcceEEEEeCC---Cc
Confidence 5799999999999999999999999 642 2332 2 5799999999999996 45555555543 11
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCC----
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG---- 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~---- 255 (445)
..+. + .| ...|.+++|||+|++||+++.| |.|++||... ......|..
T Consensus 78 ~~~~-----------------------~-~~-~~~V~~vawSPdG~~LAs~s~d-g~V~iwd~~~--~l~~l~~~~~~~~ 129 (588)
T 2j04_A 78 GLLN-----------------------S-QP-VCYPRVCKPSPIDDWMAVLSNN-GNVSVFKDNK--MLTNLDSKGNLSS 129 (588)
T ss_dssp CSST-----------------------T-SC-SCCEEEEEECSSSSCEEEEETT-SCEEEEETTE--EEEECCCSSCSTT
T ss_pred eEee-----------------------c-CC-CCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCc--eeeeccCCCcccc
Confidence 1111 1 23 4789999999999999999999 7999999544 333223443
Q ss_pred -CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--------ccc----cCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 256 -GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--------EPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 256 -~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--------~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.+.+++|||||++|++|+.||+|+|||+.+++. ..+ .+|...|.+++|+|+| +++++ .+..++.
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFS 206 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEE
Confidence 599999999999999999999999999998863 333 5677899999999999 44443 3444444
Q ss_pred EEeccCCCCccccccCccccccccc-cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
|++.... ......++ .+|. .|.+++|+ |++||+++ + +.|++||+.+++... ...
T Consensus 207 Wd~~~~~----------~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~------~tIkLWd~~~~~~~~-----~~~ 262 (588)
T 2j04_A 207 MTVSASS----------HQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P------GYVHKIDLKNYSISS-----LKT 262 (588)
T ss_dssp ECCCSSS----------SCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S------SEEEEEETTTTEEEE-----EEC
T ss_pred EECCCCc----------cccceeeecccccCcEEEEEEE--CCEEEEEe-C------CeEEEEECCCCeEEE-----EEc
Confidence 4432110 00112345 3676 89999999 68999886 5 899999999876641 222
Q ss_pred CCCCCCCceeE--eecCCCCCCCeEEEEecCeeeEeeee
Q 013338 401 GPGDNPKPVAF--SFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 401 ~~~~~v~~v~~--spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+|...|++++| +||+. .++++.++|. .+|.+
T Consensus 263 gh~~~V~~va~~~s~d~~-----~La~a~edG~-klw~~ 295 (588)
T 2j04_A 263 GSLENFHIIPLNHEKEST-----ILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SCCSCCCEEEETTCSSCE-----EEEECSSCEE-EEEES
T ss_pred CCCceEEEEEeeeCCCCC-----EEEEEcCCCC-EEEee
Confidence 89999999999 99975 5899999999 66554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-31 Score=246.28 Aligned_cols=245 Identities=17% Similarity=0.271 Sum_probs=195.6
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++++|++|+.||.|++|++.. ++....+ .+|...|.+++|+ +..+++++.|+.|++||+.....
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 208 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVES--QTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH 208 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcC--CeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc
Confidence 34699999999999999999999999999853 5555555 4799999999995 45888889999999999973221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
....+.+|. ..|.+++|+|++++|++++.| |.|++||+++++... +..|...|
T Consensus 209 ------------------------~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 209 ------------------------QIGTLQGHS-SEVCGLAWRSDGLQLASGGND-NVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ------------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTCSSEEEEECCCSSCC
T ss_pred ------------------------eeeEEcCCC-CCeeEEEEcCCCCEEEEEeCC-CeEEEccCCCCCccEEecCCcceE
Confidence 344466675 899999999999999999999 799999999887654 44678999
Q ss_pred eEEEEcCCCCE-EEEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDY-FFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~-l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 333 (445)
.+++|+|++.. +++++ .|+.|++||+++++......+...+.+++|+|++++++++.+ .++.+..|++...
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~----- 337 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS----- 337 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-----
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-----
Confidence 99999998654 55554 699999999999887555567788999999999999997642 4566666665321
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.......+.+|. .|.+++|+|+|++|++++.| |.|++|++.+++.+
T Consensus 338 ------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d------g~i~iw~~~~~~~~ 384 (401)
T 4aez_A 338 ------GLTKQVDIPAHDTRVLYSALSPDGRILSTAASD------ENLKFWRVYDGDHV 384 (401)
T ss_dssp ------EEEEEEEEECCSSCCCEEEECTTSSEEEEECTT------SEEEEEECCC----
T ss_pred ------cceeEEEecCCCCCEEEEEECCCCCEEEEEeCC------CcEEEEECCCCccc
Confidence 122333456777 89999999999999999888 99999999987765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=245.98 Aligned_cols=252 Identities=16% Similarity=0.179 Sum_probs=202.7
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|...|++++|+|+++.|++++.||.|++|++.. ....+...+.+|. ..|++++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-----------------------~~~~~~~~~~~h~-~~v~~~~~ 63 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------ETHKLIDTLTGHE-GPVWRVDW 63 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET-----------------------TEEEEEEEECCCS-SCEEEEEE
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC-----------------------CcceeeeEecCCC-CcEEEEEe
Confidence 57999999999999988888888999999999861 1234566778886 89999999
Q ss_pred CCC--CCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc---cc
Q 013338 221 GPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---EP 290 (445)
Q Consensus 221 sp~--~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~---~~ 290 (445)
+++ +++|++++.| |.|++||+.+++. .....|...|.+++|+|+ +++|++++.|+.|++||+++... ..
T Consensus 64 ~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 64 AHPKFGTILASCSYD-GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp CCGGGCSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCCCCCCEEEEeccC-CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 987 9999999999 7999999998852 344557899999999999 99999999999999999998744 34
Q ss_pred ccCCCCCeeEEEECC-------------CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE
Q 013338 291 WSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI 356 (445)
Q Consensus 291 ~~~~~~~v~~~~~sp-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 356 (445)
+..|...|.+++|+| ++.++++++ .++.+..|++..... ....+..+.+|. .|.++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEEE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCc---------ceeeEEEEecccCcEeEE
Confidence 558889999999999 688888664 345566666532210 123445677788 89999
Q ss_pred EeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 357 AWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 357 ~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
+|+|+ +++|++++.| +.|++||++++.............|...|++++|+|+|++ |+++..+|.|.
T Consensus 213 ~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~i~ 281 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKVT 281 (379)
T ss_dssp EECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEESSSSEE
T ss_pred EECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-----EEEecCCCcEE
Confidence 99999 8999999988 8999999998653222222233458889999999999886 77777899999
Q ss_pred eeeee
Q 013338 434 TYPLI 438 (445)
Q Consensus 434 ~~~~~ 438 (445)
+|++.
T Consensus 282 iw~~~ 286 (379)
T 3jrp_A 282 LWKEN 286 (379)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 99986
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-31 Score=240.89 Aligned_cols=255 Identities=18% Similarity=0.302 Sum_probs=201.5
Q ss_pred EecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE
Q 013338 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL 218 (445)
Q Consensus 139 ~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (445)
+..+|.+.|++++|+|++..|++++.||.|++|++..... .+.+...+.+|. ..|.++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~~~~~-~~v~~~ 63 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------------------NWELSDSWRAHD-SSIVAI 63 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------------------CEEEEEEEECCS-SCEEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------------------cceecceeccCC-CcEEEE
Confidence 4468999999999999988899999999999999983322 224556677785 899999
Q ss_pred EECC--CCCeEEEEEecCCeEEEEEccCCC----------ceeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCC
Q 013338 219 SWGP--DGRYLASASYESSSFTIWDVAQGL----------GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN 284 (445)
Q Consensus 219 ~~sp--~~~~l~~~~~d~g~v~vwd~~~~~----------~~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~ 284 (445)
+|+| ++++|++++.| |.|++||++++. ...+..|...|.+++|+|+ +++|++++.|+.|++||++
T Consensus 64 ~~~~~~d~~~l~s~~~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 64 DWASPEYGRIIASASYD-KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EECCGGGCSEEEEEETT-SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEcCCCCCCEEEEEcCC-CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 9999 69999999999 799999998763 2344567899999999999 9999999999999999999
Q ss_pred CCCccc-c-------------cCCCCCeeEEEECCC---CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 285 TWTSEP-W-------------SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 285 ~~~~~~-~-------------~~~~~~v~~~~~sp~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
+++... + ..+...+.+++|+|+ +.+++++..+ +.+ .++..... ....+..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~---~~~~~~~~--------~~~~~~~~ 210 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-QAI---IYQRGKDG--------KLHVAAKL 210 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-EEE---EEEECTTS--------CEEEEEEC
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC-CcE---EEEccCCC--------ceeeeeec
Confidence 876521 1 157778999999997 8888877543 333 22221100 12235667
Q ss_pred cCCC-ccceEEeCCCC----CEEEEEEcCCCcccceEEEEEEccCCCe--------------------------------
Q 013338 348 TGSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPL-------------------------------- 390 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g----~~l~~~s~d~~d~~d~~i~vwd~~~~~~-------------------------------- 390 (445)
.+|. .|++++|+|++ ++|++++.| +.|++||++.+..
T Consensus 211 ~~h~~~i~~~~~~p~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 211 PGHKSLIRSISWAPSIGRWYQLIATGCKD------GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT 284 (351)
T ss_dssp CCCCSCEEEEEECCCSSCSSEEEEEEETT------SCEEEEEEEECC---------------------------------
T ss_pred CCCCcceeEEEECCCCCCcceEEEEEcCC------CeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence 7788 89999999998 899999988 9999999986421
Q ss_pred ---------eeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 391 ---------ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 391 ---------~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
....++..+.+|...|++++|+|+|++ |+.+..+|.|.+|++..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 285 EEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-----LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ------CCSEEEEEEEEECTTSSCEEEEEECSSSCC-----EEEEETTSCEEEEEECT
T ss_pred ceeeeecccccccEEEEEecccccEEEEEEcCCCCE-----EEEecCCCcEEEEecCc
Confidence 123456677899999999999999875 77888999999998863
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=236.27 Aligned_cols=239 Identities=18% Similarity=0.302 Sum_probs=190.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.|++||+.. ++.+..+ .+|...|.+++|+|++..+++++.|+.|++||+...
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--- 139 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSS--GKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--- 139 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCC--CcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 4699999999999999999999999999953 5555554 579999999999999989999999999999999732
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v 257 (445)
.+...+..|. ..|.+++|+|++++|++++.| |.|++||+++++..... .+...+
T Consensus 140 ----------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~ 195 (312)
T 4ery_A 140 ----------------------KCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCLKTLIDDDNPPV 195 (312)
T ss_dssp ----------------------CEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCSSCCCE
T ss_pred ----------------------EEEEEecCCC-CcEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCceeeEEeccCCCce
Confidence 2344566675 799999999999999999999 79999999988765433 346789
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCee--EEEE-CCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT--GATW-DPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~--~~~~-sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
..++|+|++++|++++.|+.|++||+++++. ..+..|..... ...+ .+++++|+++ +.++.+..|++.
T Consensus 196 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~------- 267 (312)
T 4ery_A 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG-SEDNLVYIWNLQ------- 267 (312)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC-CTTSCEEEEETT-------
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE-CCCCEEEEEECC-------
Confidence 9999999999999999999999999999876 34455544332 2334 4567777755 444555555542
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+.+..+.+|. .|.+++|+|++++|++++.++ |++|++|+.+
T Consensus 268 ------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~----d~~i~~W~~d 311 (312)
T 4ery_A 268 ------TKEIVQKLQGHTDVVISTACHPTENIIASAALEN----DKTIKLWKSD 311 (312)
T ss_dssp ------TCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT----TCCEEEEECC
T ss_pred ------CchhhhhhhccCCcEEEEeecCcCCceEEEEccC----CccEEEecCC
Confidence 445567788888 899999999999999987432 1899999975
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=264.94 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=187.5
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.+++|+|+|++|++|+.|++|+|||+. ++.....+ .+|...|.+++|+|+++.+++++.|++|++||...... .
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~--~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~ 507 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-Y 507 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-E
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEECC--CCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-e
Confidence 58999999999999999999999999995 35555554 57999999999999999999999999999999752110 0
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
.+.....+|. ..|.+++|+|++ ..|++++.| |+|++||+++++... +..|.+.|
T Consensus 508 ---------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d-~~v~vwd~~~~~~~~~~~~h~~~v 564 (694)
T 3dm0_A 508 ---------------------TISEGGEGHR-DWVSCVRFSPNTLQPTIVSASWD-KTVKVWNLSNCKLRSTLAGHTGYV 564 (694)
T ss_dssp ---------------------EECSSTTSCS-SCEEEEEECSCSSSCEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---------------------eeccCCCCCC-CcEEEEEEeCCCCcceEEEEeCC-CeEEEEECCCCcEEEEEcCCCCCE
Confidence 0111123454 789999999987 579999999 799999999887654 55688999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++.+++++.+ ..+..|++... ......
T Consensus 565 ~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~i~iwd~~~~---~~~~~~ 639 (694)
T 3dm0_A 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE--HGIKIWDLESK---SIVEDL 639 (694)
T ss_dssp EEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET--TEEEEEETTTT---EEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC--CCEEEEECCCC---CChhhh
Confidence 9999999999999999999999999999887544456678999999999998887654 33444443221 111100
Q ss_pred Cccccc---------cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 338 PVDLPD---------IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 338 ~~~~~~---------~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
...... ......+. .+++++|+|+|++|++|+.| |+|++|++.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D------g~i~iW~i~ 692 (694)
T 3dm0_A 640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD------GVIRVWGIG 692 (694)
T ss_dssp CCCCC----------------CCCCEEEEEECTTSSEEEEEETT------SEEEEEEC-
T ss_pred ccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC------CeEEEEecc
Confidence 000000 00001112 47889999999999999998 999999986
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=249.89 Aligned_cols=268 Identities=15% Similarity=0.184 Sum_probs=213.7
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
+.++++ ++++|++|+.||.|++||+. +++....+ .+|.+.|++++|+|++ .+++++.||.|++||+...
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~--~~~~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~----- 193 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSI--NKKFLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG----- 193 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT-----
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECC--CCcEEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-----
Confidence 455555 67899999999999999985 46555555 5799999999999985 8889999999999999822
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEEC--CCCCeEEEEEecCCeEEEEEccCCCce-----------
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVAQGLGT----------- 248 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~g~v~vwd~~~~~~~----------- 248 (445)
.+...+.+|. ..|.+++|+ ++++++++++.| |.|++||+.++...
T Consensus 194 --------------------~~~~~~~~h~-~~v~~l~~~~~~~~~~l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 194 --------------------CCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRD-NTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp --------------------EEEEEECCCS-SCEEEEEEEESSSCEEEEEEETT-SCEEEEECCCCCCC------CCSSE
T ss_pred --------------------cEEEEECCCC-CccEEEEEecCCCCCEEEEEcCC-CcEEEeeCCCCcccccccccCCcce
Confidence 3455677775 899999998 578999999999 79999999876532
Q ss_pred -------------eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEE
Q 013338 249 -------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 249 -------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
....|...+.++ ++++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+++++++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 233456667666 67899999999999999999998877 55678999999999999999999774
Q ss_pred cCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
. ++.+..|++. +.+.+..+.+|. .|.+++|+ +++|++++.| +.|++||+.+++...
T Consensus 330 ~-dg~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d------g~v~vwd~~~~~~~~- 386 (464)
T 3v7d_B 330 M-DTTIRIWDLE-------------NGELMYTLQGHTALVGLLRLS--DKFLVSAAAD------GSIRGWDANDYSRKF- 386 (464)
T ss_dssp T-TSCEEEEETT-------------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEE-
T ss_pred C-CCcEEEEECC-------------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC------CcEEEEECCCCceee-
Confidence 3 3445555432 455677788888 89999997 5899999988 999999999866441
Q ss_pred eeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 394 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 394 ~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
...+...+..++|+|++++ ++.+. +|.|.+|++.
T Consensus 387 -----~~~~~~~~~~~~~~~~~~~-----l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 387 -----SYHHTNLSAITTFYVSDNI-----LVSGS-ENQFNIYNLR 420 (464)
T ss_dssp -----EEECTTCCCEEEEEECSSE-----EEEEE-TTEEEEEETT
T ss_pred -----eecCCCCccEEEEEeCCCE-----EEEec-CCeEEEEECC
Confidence 1235667888999999874 66665 8999999874
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=279.47 Aligned_cols=315 Identities=14% Similarity=0.191 Sum_probs=239.1
Q ss_pred ccccccccccccccccCCCcCCcC------------------------cCCeeEEEEccCCCEEEEEECCCeEEEEEccC
Q 013338 75 STLHGIISHSIKPLLHPDHVHLLP------------------------EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED 130 (445)
Q Consensus 75 ~~l~g~~~~~~~~~~~~~~~~~~~------------------------~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~ 130 (445)
..+.+|...+....+.|....+.. ...|.+++|+|+|++||+++.|+.|+|||+.
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~- 687 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA- 687 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-
Confidence 345677776666666665433322 2359999999999999999999999999995
Q ss_pred CCCcceeEEecCCCCCeeEEEECcCC--CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec
Q 013338 131 SEGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR 208 (445)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~l~~spd~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (445)
+++....+ .+|...|.+++|+|++ ..+++++.|+.|++||+.... +...+.
T Consensus 688 -~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-------------------------~~~~~~ 740 (1249)
T 3sfz_A 688 -TGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-------------------------CRNTMF 740 (1249)
T ss_dssp -TCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-------------------------EEEEEC
T ss_pred -CCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-------------------------hhheec
Confidence 46665555 4799999999999953 356677788999999998321 344566
Q ss_pred ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---------------------------------------
Q 013338 209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--------------------------------------- 249 (445)
Q Consensus 209 ~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--------------------------------------- 249 (445)
+|. ..|.+++|+|++++|++++.| |.|++||+.++....
T Consensus 741 ~h~-~~v~~~~~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 741 GHT-NSVNHCRFSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp CCS-SCEEEEEECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred CCC-CCEEEEEEecCCCEEEEEECC-CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 775 789999999999999999988 699999987653211
Q ss_pred -----------------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEE
Q 013338 250 -----------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 250 -----------------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
...|...+.+++|+|+++++++++.|+.|++||+.+++. ..+..|...|.+++|+|++++++
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE
Confidence 014567889999999999999999999999999998876 56678999999999999999998
Q ss_pred EEEcCCceEEEEEeccCCC-------------------------------------------------------------
Q 013338 312 LAFAGSLTLGSIHFASKPP------------------------------------------------------------- 330 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 330 (445)
+++. ++.+..|++.....
T Consensus 899 s~s~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 899 TASD-DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEET-TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEeC-CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 7653 45566665321000
Q ss_pred ----CccccccCc-cccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 331 ----SLDAHLLPV-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 331 ----~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
.....+++. .......+.+|. .|++++|+|+|++|++++.| +.|++||+.+++.. .+.+|..
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~i~vwd~~~~~~~------~~~~~~~ 1045 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED------SVIQVWNWQTGDYV------FLQAHQE 1045 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS------SBEEEEETTTTEEE------CCBCCSS
T ss_pred EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCceE------EEecCCC
Confidence 000011111 223345566777 89999999999999999888 99999999987655 4557899
Q ss_pred CCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 405 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 405 ~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|.+++|+|+++ +..+..+|.|.+|++.
T Consensus 1046 ~v~~~~~~~~~~------l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1046 TVKDFRLLQDSR------LLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CEEEEEECSSSE------EEEEESSSEEEEEETT
T ss_pred cEEEEEEcCCCc------EEEEECCCcEEEEECC
Confidence 999999999765 4556678999998863
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-31 Score=242.81 Aligned_cols=260 Identities=10% Similarity=0.150 Sum_probs=196.7
Q ss_pred cCCeeEEEEccC---CCEEEEEECCCeEEEEEccCCCCc-ceeEEecCCCCCeeEEE------ECcCCCcEEEEecCCcE
Q 013338 99 EVDLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSEGK-DACILTSDSQRDVKVLE------WRPNGGRSLSVGCKGGI 168 (445)
Q Consensus 99 ~~~v~~~~~sp~---g~~la~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~l~------~spd~~~l~~~~~dg~i 168 (445)
...|.+++|+|+ |++|++++.|+.|++|++.. ++ ....+ .+|...|.+++ |+|++..+++++.|+.|
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--PEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--CSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--CCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 357999999999 79999999999999999964 33 33444 57999999995 57888899999999999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE----ECCCCCeEEEEEecCCeEEEEEccC
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS----WGPDGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~sp~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
++||+........ .+....++....+.+++ |+|++++|++++.+ |.|++||+++
T Consensus 142 ~vwd~~~~~~~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~ 199 (357)
T 3i2n_A 142 KVWDPRQKDDPVA---------------------NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-GDIKLFDLRN 199 (357)
T ss_dssp EEECTTSCSSCSE---------------------EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-SEEEEEETTT
T ss_pred EEEeCCCCCCcce---------------------eccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-CeEEEEECcc
Confidence 9999985432211 11112233335788888 78999999999998 7999999999
Q ss_pred CCceeeecCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCCcc-ccc-----CCCCCeeEEEECCCCCeEEEEEc
Q 013338 245 GLGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSE-PWS-----STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 245 ~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-----~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
++......+...|.+++|+| ++++|++++.|+.|++||+++++.. .+. .|...|++++|+|+++.+++++.
T Consensus 200 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 200 MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp TEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred CceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 98877788899999999999 9999999999999999999887652 222 78999999999999994343445
Q ss_pred CCceEEEEEeccCCCCcccc----c--cCccccccccccCCC-ccceEEeCCCCCEEE-EEEcCCCcccceEEEEEEccC
Q 013338 316 GSLTLGSIHFASKPPSLDAH----L--LPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~-~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.++.+..|++.......... . .......+..+.+|. .|++++|+|+|++|+ +++.| +.|++||+.+
T Consensus 280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d------~~i~iw~~~~ 353 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD------QTVRVLIVTK 353 (357)
T ss_dssp TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECC
T ss_pred CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC------CcEEEEECCC
Confidence 55667777665332110000 0 000113466677888 899999999999998 78877 9999999986
Q ss_pred CC
Q 013338 388 TP 389 (445)
Q Consensus 388 ~~ 389 (445)
.+
T Consensus 354 ~~ 355 (357)
T 3i2n_A 354 LN 355 (357)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=239.59 Aligned_cols=255 Identities=16% Similarity=0.180 Sum_probs=201.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~~ 174 (445)
..|.+++|+|++++|++++.|+.|++|++. +++....+. +...|.+++|+|++..+++++.+ +.|++|++.
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVS--NGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT--TCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 469999999999999999999999999995 455555553 88899999999999889888888 999999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccC-CCceeEEEECCCCCeEEEEEecCCeEEEEEccC-CCce-eee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGT-PIR 251 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~-~~~~-~~~ 251 (445)
.......+..... .....+..|. ...+.+++|+|++++|++++.+ |.|++||+++ +... .+.
T Consensus 151 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~ 215 (369)
T 3zwl_B 151 RDSATHELTKVSE--------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDVSNNYEYVDSID 215 (369)
T ss_dssp ECTTTCCEEEECS--------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-SEEEEEETTTTTEEEEEEE
T ss_pred CCccceeeccccc--------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-CEEEEEECCCCcEeEEEEe
Confidence 5543332221100 0112233332 1389999999999999999999 7999999998 4443 455
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceE----------E
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL----------G 321 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~----------~ 321 (445)
.|...|.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++++++++....... .
T Consensus 216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 295 (369)
T 3zwl_B 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF 295 (369)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence 678999999999999999999999999999999988865555788999999999999999876543211 0
Q ss_pred EEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+.+|+.. ....+..+.+|. .|++++|+|++++|++++.| |.|++|+++.+.
T Consensus 296 ~i~~~d~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~~ 348 (369)
T 3zwl_B 296 EARFYHKI----------FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED------GFIRLHHFEKSY 348 (369)
T ss_dssp EEEEEETT----------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT------SEEEEEEECHHH
T ss_pred eeEEEecC----------CCcchhheecccCcEEEEEECCCCCEEEEEcCC------CeEEEEECcccc
Confidence 34444432 445566777888 89999999999999999988 999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=246.17 Aligned_cols=299 Identities=13% Similarity=0.198 Sum_probs=216.6
Q ss_pred CeeEEEEccCC----------CEEEEEEC----CCeEEEEEccC------------------------CCCcceeEEecC
Q 013338 101 DLQGVSWHQHK----------HIVAFISG----STQVIVRDYED------------------------SEGKDACILTSD 142 (445)
Q Consensus 101 ~v~~~~~sp~g----------~~la~~~~----d~~i~iw~~~~------------------------~~~~~~~~~~~~ 142 (445)
+..++.|.|+. .+++.|+. ...|.+++++. .+++........
T Consensus 47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 126 (430)
T 2xyi_A 47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN 126 (430)
T ss_dssp CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence 45678888865 45777763 34677776531 112222233347
Q ss_pred CCCCeeEEEECcCC-CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
|.+.|++++|+|++ ..+++++.+|.|++|++........ ..........+.+|. ..|.+++|+
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------~~~~~~~~~~~~~h~-~~v~~l~~~ 190 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------PSGECQPDLRLRGHQ-KEGYGLSWN 190 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------TTCCCCCSEEEECCS-SCCCCEEEC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------ccccCCCcEEecCCC-CCeEEEEeC
Confidence 99999999999974 4555666689999999973211100 001122344567775 799999999
Q ss_pred CCCC-eEEEEEecCCeEEEEEccCCCc--------eeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCC---c
Q 013338 222 PDGR-YLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT---S 288 (445)
Q Consensus 222 p~~~-~l~~~~~d~g~v~vwd~~~~~~--------~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~---~ 288 (445)
|++. +|++++.| |.|++||+..+.. ..+..|...|.+++|+| ++.+|++++.|+.|++||++++. .
T Consensus 191 ~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 191 PNLNGYLLSASDD-HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp TTSTTEEEEECTT-SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred CCCCCeEEEEeCC-CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 9988 89999888 7999999987422 33446788999999999 67889999999999999999873 2
Q ss_pred -ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCC-EE
Q 013338 289 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RL 365 (445)
Q Consensus 289 -~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l 365 (445)
..+..|...|++++|+|++++++++++.++.+..|++.. ....+..+..|. .|++++|+|+++ +|
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l 337 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN------------LKLKLHSFESHKDEIFQVQWSPHNETIL 337 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC------------TTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC------------CCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence 345588899999999999986554555556666665432 134566777787 899999999995 68
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeee---------eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLIS---------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
++++.| +.|++||+....... ..++..+.+|...|++++|+|++++ +++.+..+|.|.+|.
T Consensus 338 ~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 338 ASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW----IICSVSEDNIMQVWQ 407 (430)
T ss_dssp EEEETT------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT----EEEEEETTSEEEEEE
T ss_pred EEEeCC------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC----EEEEEECCCCEEEeE
Confidence 888877 899999998632110 1234466789999999999999874 577777899999998
Q ss_pred ee
Q 013338 437 LI 438 (445)
Q Consensus 437 ~~ 438 (445)
+.
T Consensus 408 ~~ 409 (430)
T 2xyi_A 408 MA 409 (430)
T ss_dssp EC
T ss_pred cc
Confidence 74
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=251.30 Aligned_cols=255 Identities=9% Similarity=0.095 Sum_probs=189.1
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
+.++|++++|+|+++.+++++.|+.|++|++... .+.+...+.+|. ..|.+++|+|
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~s~ 65 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-----------------------GWKHARTFSDHD-KIVTCVDWAP 65 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-----------------------EEEECCCBCCCS-SCEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-----------------------ceEEEEEEecCC-ceEEEEEEeC
Confidence 6778999999999888888888999999999822 223445567775 8999999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCC----ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC----cccccC-
Q 013338 223 DGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSS- 293 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~----~~~~~~- 293 (445)
++++|++++.| |.|++||+.+++ ...+..|...|.+++|+|++++|++++.|+.|++||+++++ ...+..
T Consensus 66 ~~~~l~s~s~d-~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (377)
T 3dwl_C 66 KSNRIVTCSQD-RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP 144 (377)
T ss_dssp TTCCEEEEETT-SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred CCCEEEEEeCC-CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence 99999999999 799999999876 34456788999999999999999999999999999999886 345555
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc--ccccC---ccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD--AHLLP---VDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
|...|++++|+|++++|++++. ++.+..|++........ ...+. .....+..+ +|. .|.+++|+|+|++|++
T Consensus 145 h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 145 LRSTILSLDWHPNNVLLAAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp CCSCEEEEEECTTSSEEEEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 8999999999999999987644 45566666532110000 00000 023345555 777 8999999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
++.| +.|++||+.+++.. ...+..+.+|...|.+++|+|+|++ |+.+.+++.+ +|..
T Consensus 223 ~~~d------~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 223 AGHD------SSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWANESAI-----VAAGYNYSPI-LLQG 279 (377)
T ss_dssp EETT------TEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEEETTEE-----EEEESSSSEE-EECC
T ss_pred EeCC------CcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEcCCCCE-----EEEEcCCcEE-EEEe
Confidence 9988 99999999987762 2224577889999999999999874 7777655555 5544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=243.13 Aligned_cols=255 Identities=13% Similarity=0.160 Sum_probs=203.2
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
.|..+|++++|+|+++.+++++.|+.|++|++... .+.....+.+|. ..|.+++|+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~~ 61 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------------KWVQVHELKEHN-GQVTGVDWA 61 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-----------------------cEEeeeeecCCC-CcccEEEEe
Confidence 48899999999999888888889999999998722 233566677775 899999999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCce---eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----c-cccC
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----E-PWSS 293 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~-~~~~ 293 (445)
|++++|++++.| |.|++||+.+++.. ....|...|.+++|+|++++|++++.|+.|++||++.++. . ....
T Consensus 62 ~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 62 PDSNRIVTCGTD-RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTTTEEEEEETT-SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCCCEEEEEcCC-CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 999999999999 79999999888643 2356788999999999999999999999999999998763 2 2346
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc--ccccc---CccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL--DAHLL---PVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
|...|.+++|+|+++++++++. ++.+..|++....... ....+ ......+..+..|. .|.+++|+|++++|++
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 219 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence 7889999999999999987643 4556666543211000 00000 01344566677777 8999999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++.| +.|++||+++++.+ ..+..|...|.+++|+|+++ +++++ .+|.|.+|++.-
T Consensus 220 ~~~d------~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-----~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 220 VSHD------STVCLADADKKMAV-----ATLASETLPLLAVTFITESS-----LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EETT------TEEEEEEGGGTTEE-----EEEECSSCCEEEEEEEETTE-----EEEEE-TTSSCEEEEEET
T ss_pred EeCC------CEEEEEECCCCcee-----EEEccCCCCeEEEEEecCCC-----EEEEE-eCCeEEEEEccC
Confidence 9988 99999999987755 46778889999999999986 47777 899999998864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-30 Score=257.99 Aligned_cols=301 Identities=12% Similarity=0.113 Sum_probs=221.0
Q ss_pred CeeEEEEccC-CCEEEEEECCCeEEEEEccCCCCcceeEEec---CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSEGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.|.+++|+|+ +++|++++.|+.|++||+. +++.+..+.. .|...|.+++|+ ++..+++++.|+.|++||+...
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGK--SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETT--TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECC--CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 6999999999 9999999999999999985 4665555534 799999999999 8888999999999999999854
Q ss_pred CCcccccccc---cccccc--------c-cCCCCCc--------eEEEEeecccC-------------------------
Q 013338 177 GNAASVRSGA---ASFLGA--------L-SRGPGTR--------WTLVDFLRSQN------------------------- 211 (445)
Q Consensus 177 ~~~~~~~~~~---~~~~~~--------~-~~~~~~~--------~~~~~~~~~~~------------------------- 211 (445)
.....+.... ...... + ....++. ......+.+|.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTT
T ss_pred cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEc
Confidence 4333222110 000000 0 0011111 12233344432
Q ss_pred -------CCceeEEEECCCCCeEEEEEecCCeEEEEEccC----------------------------------CCceee
Q 013338 212 -------GEQITALSWGPDGRYLASASYESSSFTIWDVAQ----------------------------------GLGTPI 250 (445)
Q Consensus 212 -------~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----------------------------------~~~~~~ 250 (445)
...|.+++| ++++.|++++.| |.|++||+.+ ++....
T Consensus 365 ~~~~~~~~~~v~~~~~-~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDN-SKAQEYSSISWD-DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 442 (615)
T ss_dssp TEEECCCCSCEEEEEC-CSTTCCEEEETT-TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred hhhcCcccCceEEEEE-CCCcEEEEEeCC-CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeee
Confidence 244555555 346777777777 5888887653 223333
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
..+...+.+++|+ +++|++++. |+.|++||+.+++. ..+..|...|++++|+|++++|++++. ++.+..|++.
T Consensus 443 ~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~- 518 (615)
T 1pgu_A 443 VRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQ- 518 (615)
T ss_dssp EECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT-
T ss_pred cccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCC-
Confidence 3466788999998 889999999 99999999998876 566788999999999999999997743 3445555542
Q ss_pred CCCCccccccCccccccccccC-CC-ccceEEeCC----------CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDA----------SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp----------~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
+.+.+..+.+ |. .|++++|+| ++++|++++.| +.|++||+.++.. +
T Consensus 519 ------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~----~ 576 (615)
T 1pgu_A 519 ------------SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------TNIFIYSVKRPMK----I 576 (615)
T ss_dssp ------------TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------SCEEEEESSCTTC----C
T ss_pred ------------CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC------CcEEEEECCCCce----e
Confidence 3445556666 77 899999999 99999999988 8999999998632 1
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+..+.+|...|++++|+|+++ |+.+..+|.|.+|++.
T Consensus 577 ~~~~~~h~~~v~~l~~s~~~~------l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 577 IKALNAHKDGVNNLLWETPST------LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEETTSSTTCEEEEEEEETTE------EEEEETTSCEEEEEEC
T ss_pred chhhhcCccceEEEEEcCCCC------eEEecCCceEEEEeee
Confidence 346788999999999999964 5566789999999875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=254.17 Aligned_cols=255 Identities=12% Similarity=0.107 Sum_probs=185.3
Q ss_pred cCCeeEEEEccC------CCEEEEEECCCeEEEEEccCCCCc--------ceeEEecCCCCCeeEEEECcCCCcEEEEec
Q 013338 99 EVDLQGVSWHQH------KHIVAFISGSTQVIVRDYEDSEGK--------DACILTSDSQRDVKVLEWRPNGGRSLSVGC 164 (445)
Q Consensus 99 ~~~v~~~~~sp~------g~~la~~~~d~~i~iw~~~~~~~~--------~~~~~~~~~~~~v~~l~~spd~~~l~~~~~ 164 (445)
...|.+++|+|+ +.+||+++.|++|+||++...... .......+|...|++++|+++ ..|++++.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~ 285 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFK 285 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEET
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeC
Confidence 357999999997 579999999999999999643211 001123578999999999987 58888999
Q ss_pred CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEE--EECCCC-CeEEEEEecCCeEEEEE
Q 013338 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDG-RYLASASYESSSFTIWD 241 (445)
Q Consensus 165 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~g~v~vwd 241 (445)
||+|++||+.....+ ...+.+|. ..|.++ +|+|++ ++|++++.| |+|++||
T Consensus 286 DgtV~lWD~~~~~~~------------------------~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D-~tvklWD 339 (524)
T 2j04_B 286 NGFVAEFDLTDPEVP------------------------SFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVD-GYFYIFN 339 (524)
T ss_dssp TSEEEEEETTBCSSC------------------------SEEEECSS-SCEEEEEEECCTTSCCEEEEEETT-SEEEEEC
T ss_pred CCEEEEEECCCCCCc------------------------eEEeeccc-ccEEEEEEEcCCCCCeEEEEeccC-CeEEEEE
Confidence 999999999843211 12255675 899999 578888 899999999 7999999
Q ss_pred ccCCCce-eeecCC--CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 242 VAQGLGT-PIRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 242 ~~~~~~~-~~~~~~--~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
+++++.. .+..|. ..|.+++|+|+++.|++++.|++|++||++++.+ ..+.+|...|++++|+|++++|++++ .+
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~D 418 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-AD 418 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TT
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CC
Confidence 9987653 233443 3588999999999999999999999999999876 56778999999999999999998764 33
Q ss_pred ceEEEEEeccCCCCc-c--------ccccC----------------------ccccccccccCCC-ccceEEeCCCCC--
Q 013338 318 LTLGSIHFASKPPSL-D--------AHLLP----------------------VDLPDIVSLTGSQ-GIEKIAWDASGE-- 363 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~-~--------~~~~~----------------------~~~~~~~~~~~~~-~v~~~~~sp~g~-- 363 (445)
+.+..|++....... . ..++. .++..+..+.+|. .|.+++|+|+++
T Consensus 419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~ 498 (524)
T 2j04_B 419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG 498 (524)
T ss_dssp TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence 444433321110000 0 00000 0133455667788 899999999964
Q ss_pred -EEEEEEcCCCcccceEEEEEEccC
Q 013338 364 -RLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 364 -~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+||+|+.+ |.|+||+++.
T Consensus 499 ~~lAsg~~~------g~vrlw~l~~ 517 (524)
T 2j04_B 499 KCYAFSNSA------GLLTLEYLSL 517 (524)
T ss_dssp TEEEEECTT------SEEEEEECSC
T ss_pred HHHHhhccC------ceEEEEEccc
Confidence 89999887 9999999874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-30 Score=243.55 Aligned_cols=262 Identities=15% Similarity=0.279 Sum_probs=197.3
Q ss_pred cCCeeEEEEccC-CCEEEEEECCCeEEEEEccCC--------CCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcE
Q 013338 99 EVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS--------EGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGI 168 (445)
Q Consensus 99 ~~~v~~~~~sp~-g~~la~~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i 168 (445)
...|++++|+|+ +.+||+++.+|.|+||++... .......+ .+|...|++++|+|++. .|++++.||.|
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 346999999997 789999999999999999741 13333444 47999999999999987 67777789999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCC-
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL- 246 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~- 246 (445)
++|++.......... .....+.+|. ..|.+++|+| ++..|++++.| |.|++||++++.
T Consensus 207 ~vwd~~~~~~~~~~~------------------~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~d-g~i~i~d~~~~~~ 266 (430)
T 2xyi_A 207 CLWDINATPKEHRVI------------------DAKNIFTGHT-AVVEDVAWHLLHESLFGSVADD-QKLMIWDTRNNNT 266 (430)
T ss_dssp EEEETTSCCBGGGEE------------------ECSEEECCCS-SCEEEEEECSSCTTEEEEEETT-SEEEEEETTCSCS
T ss_pred EEEeCCCCCCCCcee------------------ccceeecCCC-CCEeeeEEeCCCCCEEEEEeCC-CeEEEEECCCCCC
Confidence 999998533221110 1123455665 7999999999 67788888888 799999999762
Q ss_pred --c-eeeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 247 --G-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 247 --~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
. ..+..|...|++++|+|+++ .|++++.||.|++||+++... ..+..|...|.+++|+|+++.+++++..++.+
T Consensus 267 ~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 267 SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 2 34557889999999999987 688999999999999998432 55667999999999999997655555566777
Q ss_pred EEEEeccCCCCccc-cccCccccccccccCCC-ccceEEeCCCCC-EEEEEEcCCCcccceEEEEEEccC
Q 013338 321 GSIHFASKPPSLDA-HLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~-~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
..|++......... .........+..+.+|. .|++++|+|+++ +|++++.| +.|++|++..
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d------g~i~iw~~~~ 410 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED------NIMQVWQMAE 410 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECH
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC------CCEEEeEccc
Confidence 77776542110000 00000124455667777 799999999999 88888877 9999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-30 Score=255.94 Aligned_cols=287 Identities=14% Similarity=0.198 Sum_probs=221.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCC--cceeEEecCCCCC-eeEEEECc--CCCcEEEEecCCcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEG--KDACILTSDSQRD-VKVLEWRP--NGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~-v~~l~~sp--d~~~l~~~~~dg~i~vw~~ 173 (445)
...|.+++|+|+|++||+++ ++.|+||+++.... +....+ .+|... |++++|+| +++.+++++.||.|++|++
T Consensus 18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred cCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 45799999999999999988 88999999964211 444444 579999 99999999 9888999999999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---CeEEEEEccCCCceee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---g~v~vwd~~~~~~~~~ 250 (445)
......... ...+...+..|. ..|.+++|+|++++|++++.+. +.|++||. ......+
T Consensus 96 ~~~~~~~~~-----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-~~~~~~~ 156 (615)
T 1pgu_A 96 TFDKESNSV-----------------EVNVKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEV 156 (615)
T ss_dssp EEEGGGTEE-----------------EEEEEEEEECCS-SCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEEEC
T ss_pred CCCcccccc-----------------cccccchhhccc-ccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-CCcceee
Confidence 622110000 113455667775 8999999999999999998763 48888882 2233456
Q ss_pred ecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCc-ccccCCCC---CeeEEEECCC-CCeEEEEEcCCceEEEEE
Q 013338 251 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSG---FVTGATWDPE-GRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~---~v~~~~~sp~-~~~l~~~~~~~~~~~~~~ 324 (445)
..|...|.+++|+|+++ .|++++.|+.|++||+.+++. ..+..|.. .|.+++|+|+ +++|++++. ++.+..|+
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd 235 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFD 235 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEE
T ss_pred ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEE
Confidence 67889999999999998 799999999999999998876 45667888 8999999999 999987743 34455554
Q ss_pred eccCCCCccccccCccccccccc-c---CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSL-T---GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI 399 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~ 399 (445)
+. ..+.+..+ . .|. .|.+++|+ ++++|++++.| +.|++||+++++.. ..+
T Consensus 236 ~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~-----~~~ 290 (615)
T 1pgu_A 236 GK-------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD------ATIRVWDVTTSKCV-----QKW 290 (615)
T ss_dssp TT-------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT------SEEEEEETTTTEEE-----EEE
T ss_pred CC-------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC------CcEEEEECCCCcEE-----EEE
Confidence 32 34445555 4 666 89999999 99999999988 99999999987655 244
Q ss_pred eCC----CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 400 RGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 400 ~~~----~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..+ ...+.++.|+ +++ .++++..+|.|.+|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~-~~~-----~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVAT-GNG-----RIISLSLDGTLNFYELG 327 (615)
T ss_dssp ECCTTCGGGCEEEEEEE-ETT-----EEEEEETTSCEEEEETT
T ss_pred cCCCCcccCceeEEEeC-CCC-----eEEEEECCCCEEEEECC
Confidence 444 3556777775 554 47788889999998864
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-30 Score=244.97 Aligned_cols=271 Identities=12% Similarity=0.048 Sum_probs=197.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCc---ceeEEe------------------------------------
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK---DACILT------------------------------------ 140 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~---~~~~~~------------------------------------ 140 (445)
.++.+++|+|+|++|+++ .++.|++|++.. ++ .+....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS--PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEET--TTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCC--CCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 468899999999976655 578999999864 44 222211
Q ss_pred -----------------cCCCCCeeEEEECcCCCcE-EEEecCCcEEEEccC--CCCCccccccccccccccccCCCCCc
Q 013338 141 -----------------SDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPS--YPGNAASVRSGAASFLGALSRGPGTR 200 (445)
Q Consensus 141 -----------------~~~~~~v~~l~~spd~~~l-~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (445)
.+|...|++++|+|+++.| ++++.|+.|++|++. .....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~--------------------- 140 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL--------------------- 140 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE---------------------
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee---------------------
Confidence 0244479999999998886 556678999999997 33222
Q ss_pred eEEEEeec--ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-----eeecCCCCeeEEEEcCC---CCEEE
Q 013338 201 WTLVDFLR--SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGGLSILKWSPT---GDYFF 270 (445)
Q Consensus 201 ~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-----~~~~~~~~v~~~~~sp~---g~~l~ 270 (445)
..+. .+ ...|.+++|+|++++|++++.+ |.|++|++.++... .+..|...|.+++|+|+ +++|+
T Consensus 141 ----~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~-g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 214 (450)
T 2vdu_B 141 ----KLRKRFCF-SKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII 214 (450)
T ss_dssp ----EEEEEEEC-SSCEEEEEECTTSSEEEEEETT-SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred ----eeeecccC-CCCceEEEEcCCCCEEEEEeCC-CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE
Confidence 1222 33 3789999999999999999998 79999999877654 45678899999999999 99999
Q ss_pred EEecCCeEEEEeCCCCCcc-c-ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-
Q 013338 271 AAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL- 347 (445)
Q Consensus 271 ~~~~dg~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 347 (445)
+++.|+.|++||+++++.. . +.+|...|.+++|+ ++++|++++ .++.+..|++.... ......... .+..+
T Consensus 215 s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~---~~~~~~~~~-~~~~~~ 288 (450)
T 2vdu_B 215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGK---NLSTFDYNS-LIKPYL 288 (450)
T ss_dssp EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCC---EEEEEECHH-HHGGGC
T ss_pred EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCc---Eeeeecchh-hhhhhh
Confidence 9999999999999988763 3 55899999999999 999999774 44455555443211 111110000 00000
Q ss_pred ---------------cCCC-ccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEc--cCCCeeeeeeeeeeeCCCCCCCc
Q 013338 348 ---------------TGSQ-GIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKP 408 (445)
Q Consensus 348 ---------------~~~~-~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~ 408 (445)
.... .|.+++|+|++++|++++ .+ +.|++|++ ..+.. ...+..+.+| ..|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------~~i~iw~~~~~~~~~--l~~~~~~~~~-~~v~~ 359 (450)
T 2vdu_B 289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT------KCIIILEMSEKQKGD--LALKQIITFP-YNVIS 359 (450)
T ss_dssp CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC------SEEEEEEECSSSTTC--EEEEEEEECS-SCEEE
T ss_pred hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC------CeEEEEEeccCCCCc--eeeccEeccC-CceEE
Confidence 0122 689999999999999998 55 89999999 44322 2334567777 78999
Q ss_pred eeEeecC
Q 013338 409 VAFSFHD 415 (445)
Q Consensus 409 v~~spdg 415 (445)
++|+|++
T Consensus 360 ~~~~~~~ 366 (450)
T 2vdu_B 360 LSAHNDE 366 (450)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 9999964
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-30 Score=242.11 Aligned_cols=239 Identities=17% Similarity=0.308 Sum_probs=195.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++||+|+.|+.|+||++. +++.+..+ .+|...+.+++|++ ..+++++.|+.+++|+......
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~--~~~~~~~~-~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~- 221 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNM-TSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH- 221 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC-
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcC--CCcEEEEE-eCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce-
Confidence 469999999999999999999999999995 46655555 57999999988864 5788888899999999873221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----eeeecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~~~~~ 254 (445)
.+..+.+|. ..+..+.|+|+++++++++.| |.+++|+...++. .....+.
T Consensus 222 -----------------------~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~D-~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 222 -----------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp -----------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESSCCSSCSCCSEEECCCS
T ss_pred -----------------------eeEEecccc-cceeeeeecCCCCeeeeeecc-ccceEEeeccccccceeeeeecccC
Confidence 344567775 899999999999999999999 7999999987653 3445678
Q ss_pred CCeeEEEEcCCCC-EEEE--EecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCC
Q 013338 255 GGLSILKWSPTGD-YFFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP 330 (445)
Q Consensus 255 ~~v~~~~~sp~g~-~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~ 330 (445)
..|.+++|+|++. .+++ |+.|++|++||+.+++......+...+.++.|+|+++.++++.. .++.+..|++.
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~---- 352 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---- 352 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT----
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC----
Confidence 8999999999755 4444 45799999999999988655566678999999999999987653 44555555432
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+...+.++.+|. .|++++|+|||++|++|+.| ++|+|||+...
T Consensus 353 ---------~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D------~tvriWdv~~~ 396 (420)
T 4gga_A 353 ---------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFEL 396 (420)
T ss_dssp ---------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSCS
T ss_pred ---------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCCC
Confidence 556788899999 89999999999999999988 99999999754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.2e-30 Score=244.69 Aligned_cols=298 Identities=15% Similarity=0.155 Sum_probs=216.1
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC--cCCCcEEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s--pd~~~l~~~~~dg~i~vw~~~~ 175 (445)
+...|.+++|+|++ +|++|+.|++|++||++ +++....+ .+|...|.+++|+ +++..+++++.|+.|++||+..
T Consensus 161 h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK--KGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp CSSCEEEEEECSTT-EEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred CCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC--CCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 34579999999998 89999999999999995 45555554 5799999999998 5667788888999999999985
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGF 254 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~ 254 (445)
............ .......+.....+...+.+|. ..+.++ +++++++++++.| |.|++||+.+++... +..|.
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~~d-~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 237 ESSVPDHGEEHD--YPLVFHTPEENPYFVGVLRGHM-ASVRTV--SGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp CCCC------CC--SSEEESCGGGCTTEEEEECCCS-SCEEEE--EEETTEEEEEETT-SCEEEEETTTTEEEEEECCCS
T ss_pred CcccccccccCC--cceEeeccCCCeEEEEEccCcc-ceEEEE--cCCCCEEEEEeCC-CeEEEEECCCCcEEEEecCCC
Confidence 543322111100 0001111111222455677775 677776 5788999999999 799999999887654 44678
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
..|.+++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+ ++++++++ .++.+..|++..
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~------ 381 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDAND------ 381 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTT------
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCC------
Confidence 9999999999999999999999999999999887 5677899999999998 46777664 344555554421
Q ss_pred ccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 334 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
............+..++|+|++++|++++ + +.|++||+++++.+. ..+.+|...|++++|+
T Consensus 382 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d------g~i~iwd~~~g~~~~----~~~~~~~~~v~~v~~~- 442 (464)
T 3v7d_B 382 -------YSRKFSYHHTNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLVH----ANILKDADQIWSVNFK- 442 (464)
T ss_dssp -------CCEEEEEECTTCCCEEEEEECSSEEEEEE-T------TEEEEEETTTCCEEE----SCTTTTCSEEEEEEEE-
T ss_pred -------CceeeeecCCCCccEEEEEeCCCEEEEec-C------CeEEEEECCCCcEEe----hhhccCCCcEEEEEec-
Confidence 12222222222678889999999999987 6 899999999988762 2245688899999996
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++ .+++.+.++|.+.++-+.
T Consensus 443 -~~----~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 443 -GK----TLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp -TT----EEEEEEEETTEEEEEEEE
T ss_pred -CC----EEEEEEEeCCeEEEEEee
Confidence 32 245555566666555444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.1e-31 Score=266.23 Aligned_cols=247 Identities=16% Similarity=0.246 Sum_probs=198.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC--CCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..|++++|+|+|++|++|+.||.|+||++...+++....+ .+|.+.|++++|+|+ +..+++++.||.|++||+...
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~- 87 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG- 87 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-
Confidence 4599999999999999999999999999974444444444 579999999999988 888999999999999998722
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC--CCeEEEEEecCCeEEEEEccCCC---ceeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~---~~~~~~ 252 (445)
.+.....+.+|. ..|.+++|+|+ ++.+++++.| |.|++||++++. ......
T Consensus 88 ----------------------~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~d-g~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 88 ----------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSD-GKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp ----------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETT-SEEEEEECCSSSCCCCEEEEC
T ss_pred ----------------------cccccccccCCC-CCeEEEEECCCCCCCEEEEEeCC-CcEEEEEeecCCCcceeEeec
Confidence 233555677775 89999999999 9999999999 799999998873 345567
Q ss_pred CCCCeeEEEEcC-------------CCCEEEEEecCCeEEEEeCCCCCc-----ccccCCCCCeeEEEECCC---CCeEE
Q 013338 253 GFGGLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMIL 311 (445)
Q Consensus 253 ~~~~v~~~~~sp-------------~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---~~~l~ 311 (445)
|...|.+++|+| ++++|++++.||.|++||++++.. ..+..|...|++++|+|+ +++++
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence 889999999999 589999999999999999988743 345688999999999999 78888
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++ .++.+..|++...... ....+.....|. .|++++|+|+|++|++++.| |.|++|++..
T Consensus 224 s~s-~Dg~I~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D------g~I~vwd~~~ 285 (753)
T 3jro_A 224 SVS-QDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL 285 (753)
T ss_dssp EEE-SSSCEEEEEESSSSSC--------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS------SCEECCBCCS
T ss_pred EEe-cCCEEEEecCCCCCCc--------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC------CEEEEEecCC
Confidence 664 4455666665432100 011222334455 89999999999999999887 8999999974
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=242.30 Aligned_cols=240 Identities=12% Similarity=0.199 Sum_probs=188.8
Q ss_pred cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEcc
Q 013338 99 EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~ 173 (445)
...|.+++|+|+ |++|++|+.|+.|++|++.. ++.+..+ .+|...|++++|+| ++..+++++.|+.|++||+
T Consensus 69 ~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT--MQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT--CCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh--ceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 456999999999 77999999999999999853 5555555 47999999999999 7777888888999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEee---cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
.... ....+ ..|. ..|.+++|+|++++|++++.| |.|++||+++++....
T Consensus 146 ~~~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~ 198 (366)
T 3k26_A 146 QTDT-------------------------LVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMD-HSLKLWRINSKRMMNA 198 (366)
T ss_dssp TTTE-------------------------EEEEECSTTSCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESCSHHHHHH
T ss_pred ecCe-------------------------EEEEeccccccc-CceeEEEECCCCCEEEEecCC-CCEEEEECCCCccccc
Confidence 7322 23333 4564 899999999999999999999 7999999987643211
Q ss_pred -----------------------------ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------
Q 013338 251 -----------------------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS------------- 288 (445)
Q Consensus 251 -----------------------------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------------- 288 (445)
..|...|.+++|+ +++|++++.|+.|++||+++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 199 IKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred cceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 1278899999998 78999999999999999987653
Q ss_pred --ccccCCCCCeeEEEECCC--CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC--C-ccceEEeCCC
Q 013338 289 --EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDAS 361 (445)
Q Consensus 289 --~~~~~~~~~v~~~~~sp~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~sp~ 361 (445)
..+..|...|++++|+|+ +++|++++ .++.+..|++..... .......+..| . .|++++|+|+
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 277 ILGRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDP---------HKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp EEEEEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSG---------GGCEEEEECCTTCCSCEEEEEECTT
T ss_pred eeccccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCC---------ccccceEEcccccCCceEEEEeCCC
Confidence 233467778999999999 99998763 445555555432110 11123356666 4 8999999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEEcc
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+++|++++.| |.|++||+.
T Consensus 347 ~~~l~s~~~d------g~i~iwd~~ 365 (366)
T 3k26_A 347 SSILIAVCDD------ASIWRWDRL 365 (366)
T ss_dssp SSEEEEEETT------SEEEEEEC-
T ss_pred CCeEEEEeCC------CEEEEEEec
Confidence 9999999988 999999985
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=240.57 Aligned_cols=273 Identities=11% Similarity=0.161 Sum_probs=213.8
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++| ++++|++|+.||.|++||+. +++....+ .+|...|.+++| +++.+++++.||.|++||+...
T Consensus 134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~--~~~~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--- 203 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKN--TLECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--- 203 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESSSCEEEEESS--SCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---
T ss_pred CcEEEEEE--CCCEEEEEeCCCeEEEEeCC--CCeEEEEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---
Confidence 35777766 89999999999999999985 45555555 579999999999 5678888999999999999832
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFG 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~ 255 (445)
.+...+.+|. ..|.+++|++ ..+++++.| |.|++||+.++... ....|..
T Consensus 204 ----------------------~~~~~~~~h~-~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 204 ----------------------EMLNTLIHHC-EAVLHLRFNN--GMMVTCSKD-RSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp ----------------------CEEEEECCCC-SCEEEEECCT--TEEEEEETT-SCEEEEECSSSSCCEEEEEECCCSS
T ss_pred ----------------------cEEEEEcCCC-CcEEEEEEcC--CEEEEeeCC-CcEEEEeCCCCCCceeeeEecCCCC
Confidence 2445566775 7999999974 589999999 79999999987653 3456788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.|.+++| ++++|++++.|+.|++||+++++. ..+..|...+.++.| +++++++++ .++.+..|++.
T Consensus 258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~iwd~~-------- 324 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIE-------- 324 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEEEETT--------
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEEEECC--------
Confidence 9999999 789999999999999999999887 566788999999999 467777664 34455555542
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee----eeeeeeeeCCCCCCCce
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS----LSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~v~~v 409 (445)
+...+..+.+|. .|.+++| ++++|++++.| |.|++||+.+++... ...+..+.+|...|.++
T Consensus 325 -----~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 325 -----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp -----TCCEEEEECCCSSCEEEEEC--CSSEEEEEETT------SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred -----CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC------CcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 455677788888 8999999 78999999988 999999997644110 01345678899999999
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
+| +++ .++.+..+|.|.+|++.-.+
T Consensus 392 ~~--~~~-----~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 392 QF--DEF-----QIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EE--CSS-----CEEECCSSSEEEEEC-----
T ss_pred Ee--CCC-----EEEEEeCCCEEEEEECCCCC
Confidence 99 554 37788899999999986543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=229.04 Aligned_cols=250 Identities=14% Similarity=0.185 Sum_probs=188.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|+|++|++++.|+.|++|+... ....... ..+...+..+.+++++..+++++.|+.+++||+....
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~- 161 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTT--GTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC- 161 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecc--cceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-
Confidence 34699999999999999999999999999853 3333333 4577889999999999999999999999999986221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
.......+|. ..+..++|++++ .++++++.| +.|++||+++++... +..|..
T Consensus 162 -----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~~d-~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 162 -----------------------KYTVQDESHS-EWVSCVRFSPNSSNPIIVSCGWD-KLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp -----------------------EEEECSSSCS-SCEEEEEECSCSSSCEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred -----------------------eEEEEecccc-CcccceEEccCCCCcEEEEEcCC-CEEEEEECCCCceeeEecCCCC
Confidence 1222344554 789999998865 457788888 699999999887654 456889
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.|++++|+|++++|++++.|+.|++||+++.+......+...+.+++|+|++.+++++.+ +.+..|++.. .....
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d--~~i~iwd~~~---~~~~~ 291 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG--PSIKIWDLEG---KIIVD 291 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEET--TEEEEEETTT---TEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCC--CEEEEEECCC---CeEEE
Confidence 999999999999999999999999999999887555556678999999999887765532 4444444321 11100
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
... .........+|. .|++++|+|||++|++|+.| |.|+|||+++|+
T Consensus 292 ~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------g~v~iW~~~tGt 339 (340)
T 4aow_A 292 ELK-QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD------NLVRVWQVTIGT 339 (340)
T ss_dssp EEC-CC-------CCCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEC--
T ss_pred ecc-ccceeeeccCCCCCEEEEEECCCCCEEEEEeCC------CEEEEEeCCCcC
Confidence 000 111122344566 89999999999999999988 999999999875
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=232.09 Aligned_cols=240 Identities=10% Similarity=0.073 Sum_probs=177.1
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccc
Q 013338 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG 185 (445)
Q Consensus 106 ~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 185 (445)
.+.+++.+|++|+.||.|++||+.. ++.+..+. ...|.++.|+|+ +++++.|+.|++|+.........+.+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~--~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD--SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS--SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC--CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 4456889999999999999999964 55555553 456888899988 888889999999987621111111111
Q ss_pred cccccccccCCCCCceEEEEeec-ccCCCceeEEEECC--CCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEE
Q 013338 186 AASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSIL 260 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp--~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~ 260 (445)
.++..+. +| ...|.+++|+| +++++++++.| |+|++||+++++..... .+...+.++
T Consensus 115 ----------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~~i~~~ 176 (343)
T 3lrv_A 115 ----------------KVLREIEVDS-ANEIIYMYGHNEVNTEYFIWADNR-GTIGFQSYEDDSQYIVHSAKSDVEYSSG 176 (343)
T ss_dssp ----------------CEEEEEECCC-SSCEEEEECCC---CCEEEEEETT-CCEEEEESSSSCEEEEECCCSSCCCCEE
T ss_pred ----------------ceeEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCC-CcEEEEECCCCcEEEEEecCCCCceEEE
Confidence 1222333 44 37899999999 99999999999 79999999998875544 345679999
Q ss_pred EEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccC-CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 261 KWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 261 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~-~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+|+|++++|++|+.|+.|++||+++++.. .+.. |...|++++|+|++.+|++++++ .+..|++....
T Consensus 177 ~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~--~v~iwd~~~~~-------- 246 (343)
T 3lrv_A 177 VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ--TVVCFDLRKDV-------- 246 (343)
T ss_dssp EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS--BEEEEETTSST--------
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC--eEEEEEcCCCC--------
Confidence 99999999999999999999999998864 5666 89999999999999999988632 45555543211
Q ss_pred CccccccccccCCC-ccc--eEEeCCCCCEEEEEEc-CCCcccceEEEEEEccCCC
Q 013338 338 PVDLPDIVSLTGSQ-GIE--KIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~--~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~~~~ 389 (445)
....+..+..|. .+. +++|+|+|++|++++. + +.|++|++....
T Consensus 247 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d------~~i~v~~~~~~~ 294 (343)
T 3lrv_A 247 --GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES------NSLTIYKFDKKT 294 (343)
T ss_dssp --TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT------TEEEEEEECTTT
T ss_pred --cceeecccccccccccceEEEECCCCCEEEEecCCC------CcEEEEEEcccc
Confidence 001122222333 444 5999999999999987 6 889999997543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=236.65 Aligned_cols=239 Identities=12% Similarity=0.156 Sum_probs=180.6
Q ss_pred CCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
..|.+++|+| ++++|++++.|+.|++||+. +.....+.. .|...|.+++|+|++..+++++.|+.|++||+. .
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~ 194 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFS---GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G 194 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETT---SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECC---CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C
Confidence 4699999999 78999999999999999986 233333322 345789999999999999999999999999985 1
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccC----CCceeee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ----GLGTPIR 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~----~~~~~~~ 251 (445)
. ....+.+|. ..|.+++|+|+++ +|++++.| |.|++||+++ +......
T Consensus 195 ~-------------------------~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~ 247 (383)
T 3ei3_B 195 H-------------------------EIFKEKLHK-AKVTHAEFNPRCDWLMATSSVD-ATVKLWDLRNIKDKNSYIAEM 247 (383)
T ss_dssp C-------------------------EEEEEECSS-SCEEEEEECSSCTTEEEEEETT-SEEEEEEGGGCCSTTCEEEEE
T ss_pred C-------------------------EEEEeccCC-CcEEEEEECCCCCCEEEEEeCC-CEEEEEeCCCCCcccceEEEe
Confidence 1 344466775 8999999999999 89999988 7999999998 4555566
Q ss_pred cCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-cccc-------CCCCCeeEEEECCCCCeEEEEEcCC-----
Q 013338 252 RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS-------STSGFVTGATWDPEGRMILLAFAGS----- 317 (445)
Q Consensus 252 ~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-------~~~~~v~~~~~sp~~~~l~~~~~~~----- 317 (445)
.|...|.+++|+| ++++|++++.|+.|++||+++++. ..+. .+...+. +.|+|++..++++...+
T Consensus 248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~ 326 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLL 326 (383)
T ss_dssp ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCT
T ss_pred cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCccccc
Confidence 7899999999999 999999999999999999998765 2222 2233343 35666555555443211
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCC--C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.++.+++|+.. +.+.+..+.++ . .+..++|+|++++|++++ | +.|++||+++
T Consensus 327 s~d~~i~iwd~~----------~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d------~~i~iw~~~~ 382 (383)
T 3ei3_B 327 NDKRTIDIYDAN----------SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G------FNILIWNRED 382 (383)
T ss_dssp TCCCCEEEEETT----------TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T------TEEEEEECC-
T ss_pred CCCCeEEEEecC----------CCceeeeecCCCCCceEEEEEEecCccEEEEec-C------CcEEEEecCC
Confidence 123444444432 34556666653 3 567779999999999996 6 8999999874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=258.74 Aligned_cols=282 Identities=16% Similarity=0.215 Sum_probs=217.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++||+++.|+.|+||++. +++....+ .+|...|++++|+|++..+++++.||.|++|++...
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--- 129 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYN--TGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--- 129 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETT--TCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT---
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC---
Confidence 469999999999999999999999999985 46555555 579999999999999989999999999999998722
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCcee-eecC-CCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRG-FGG 256 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~-~~~ 256 (445)
+.+...+.+|. ..|.+++|+| +++.|++++.| |.|++||+.++.... +..+ ...
T Consensus 130 ---------------------~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~d-g~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 130 ---------------------WALEQTFEGHE-HFVMCVAFNPKDPSTFASGCLD-RTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp ---------------------SEEEEEEECCS-SCEEEEEEETTEEEEEEEEETT-SEEEEEETTCSSCSEEEECCCTTC
T ss_pred ---------------------ceEEEEEcCCC-CcEEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCcceeEEecCCCCC
Confidence 13445566775 7999999999 88999999999 799999998776543 3333 488
Q ss_pred eeEEEEcC--CCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 257 LSILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 257 v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+.+++|+| ++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+++++++++. ++.+..|++.
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~------- 258 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSS------- 258 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETT-------
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECC-------
Confidence 99999999 999999999999999999998876 456678899999999999999987643 3445554432
Q ss_pred ccccCccccccccccCCC-ccceEEeCCCCC--EEEEEEcCCCcccceEEEEEEccCCCeee-ee---------------
Q 013338 334 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE--RLAVSYKGGDDIYKGLIAIYDARRTPLIS-LS--------------- 394 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~--~l~~~s~d~~d~~d~~i~vwd~~~~~~~~-~~--------------- 394 (445)
+...+..+..+. .+.+++|+|+|+ ++++++ + +.+.+|++..+.... ..
T Consensus 259 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (814)
T 3mkq_A 259 ------TYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-D------NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325 (814)
T ss_dssp ------TCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-T------TEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred ------CCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-C------CCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence 345566666676 899999999997 455554 4 568888875432110 00
Q ss_pred ----------------------eeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 395 ----------------------LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 395 ----------------------~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
....+..+...+.+++|+|+|++ ++++. +|.+.+|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-----la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRF-----VTVVG-DGEYVIYTA 384 (814)
T ss_dssp TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSE-----EEEEE-TTEEEEEET
T ss_pred eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCE-----EEEec-CCEEEEEEC
Confidence 00112335556899999999885 55554 677777664
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=240.82 Aligned_cols=245 Identities=17% Similarity=0.151 Sum_probs=189.5
Q ss_pred cCCeeEEEEccC----C---CEEEEEECCCeEEEEEccCCCCcc-----eeEEecCC-----CCCeeEEEEC----cCCC
Q 013338 99 EVDLQGVSWHQH----K---HIVAFISGSTQVIVRDYEDSEGKD-----ACILTSDS-----QRDVKVLEWR----PNGG 157 (445)
Q Consensus 99 ~~~v~~~~~sp~----g---~~la~~~~d~~i~iw~~~~~~~~~-----~~~~~~~~-----~~~v~~l~~s----pd~~ 157 (445)
...|.+++|+|+ | ++|++++.|+.|++|++.. ++. ...+ ..| ...|.+++|+ |++.
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR--EDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE--CTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----C
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC--Ccccccccceee-cccccccCCCcEEEEEEeeccCCCCc
Confidence 346999999999 9 9999999999999999975 332 3333 456 5899999999 9988
Q ss_pred c-EEEEecCCcEEEEccCC------CCCccccccccccccccccCCCCCceEEEEee-------cccCCCceeEEEECCC
Q 013338 158 R-SLSVGCKGGICIWAPSY------PGNAASVRSGAASFLGALSRGPGTRWTLVDFL-------RSQNGEQITALSWGPD 223 (445)
Q Consensus 158 ~-l~~~~~dg~i~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~sp~ 223 (445)
. +++++.|+.|++||+.. ..... |.....+ ..| ...|.+++|+|+
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 197 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLN--------------------WSPTLELQGTVESPMTP-SQFATSVDISER 197 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTC--------------------CCCEEEEEEEECCSSSS-CCCCCEEEECTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceee--------------------ccCcceeeeeeccccCC-CCCceEEEECCC
Confidence 8 88888999999999985 22221 0011122 234 478999999999
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceee-ec---C---CCCeeEEEEcCCCCEEEEEecC---CeEEEEeCCCCCc-cccc
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPI-RR---G---FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWS 292 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~---~---~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~-~~~~ 292 (445)
+ +|++++.| |.|++||+++++.... .. | ...|.+++|+|++++|++++.| +.|++||+++++. ..+.
T Consensus 198 ~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~ 275 (397)
T 1sq9_A 198 G-LIATGFNN-GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS 275 (397)
T ss_dssp S-EEEEECTT-SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred c-eEEEEeCC-CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec
Confidence 9 99999988 7999999998876543 44 6 8899999999999999999999 9999999998876 4455
Q ss_pred C-------------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc------CC---
Q 013338 293 S-------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT------GS--- 350 (445)
Q Consensus 293 ~-------------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 350 (445)
. |...|.+++|+|++++|++++ .++.+..|++. ..+.+..+. +|
T Consensus 276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-------------~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVK-------------TKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETT-------------TTEEEEEEECCGGGCSSGGG
T ss_pred cCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcC-------------CCceeEEEecccCcccchhh
Confidence 5 889999999999999999774 34555555543 233344444 44
Q ss_pred ------------C-ccceEEeCCCC----------CEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 351 ------------Q-GIEKIAWDASG----------ERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 351 ------------~-~v~~~~~sp~g----------~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
. .|++++|+|+| ++|++++.| +.|++|++++++
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~g~ 397 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD------RSIRWFREAGGK 397 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT------TEEEEEEEEC--
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCC------CcEEEEEcCCCC
Confidence 6 89999999999 799999988 999999998753
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=239.42 Aligned_cols=286 Identities=12% Similarity=0.096 Sum_probs=218.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE----ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL----TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~----~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
..+.+++|+|++.++++++.++.|++||+.. ++..... ..+|...|.+++|+|++..+++++.|+.|++||+..
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINS--GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTT--CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCC--CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 3567999999888888888899999999853 5544322 236888999999999977777777789999999873
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGF 254 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~~ 254 (445)
.. ....+..|. ..+.+++|+|+++.+++++ .+ |.|++||+++++........
T Consensus 201 ~~-------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~ 253 (433)
T 3bws_A 201 LA-------------------------YKATVDLTG-KWSKILLYDPIRDLVYCSNWIS-EDISVIDRKTKLEIRKTDKI 253 (433)
T ss_dssp CC-------------------------EEEEEECSS-SSEEEEEEETTTTEEEEEETTT-TEEEEEETTTTEEEEECCCC
T ss_pred ce-------------------------EEEEEcCCC-CCeeEEEEcCCCCEEEEEecCC-CcEEEEECCCCcEEEEecCC
Confidence 22 233344554 7899999999999887666 56 79999999988776666667
Q ss_pred CCeeEEEEcCCCCEEEEEe--------cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 255 GGLSILKWSPTGDYFFAAK--------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..+.+++|+|++++|++++ .|+.|++||+++++......+...+.+++|+|+++.++++...++.+..|++.
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 7799999999999999887 48899999999987755555666889999999999888777777777666653
Q ss_pred cCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc---------ccceEEEEEEccCCCeeeeeeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---------IYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d---------~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
+.+.+..+.....+.+++|+|+|++|++++.+.+. ..||.|++||+.+++.+.
T Consensus 334 -------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~----- 395 (433)
T 3bws_A 334 -------------EKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE----- 395 (433)
T ss_dssp -------------TTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE-----
T ss_pred -------------CCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE-----
Confidence 22333444433378999999999999988764320 113799999999876652
Q ss_pred eeeCCCCCCCceeEeecCCCCCCCeEEEE-ecCeeeEeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI 438 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~~~~~~l~~~-~~~G~v~~~~~~ 438 (445)
.+.. ...+.+++|+|+|++ |.++ ..+|.|.+|++.
T Consensus 396 ~~~~-~~~~~~~~~s~dg~~-----l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FWEA-GNQPTGLDVSPDNRY-----LVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEC-SSSEEEEEECTTSCE-----EEEEETTTTEEEEEEET
T ss_pred EecC-CCCCceEEEcCCCCE-----EEEEECCCCeEEEEEec
Confidence 3443 456899999999885 4444 459999999863
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=235.33 Aligned_cols=248 Identities=16% Similarity=0.264 Sum_probs=193.7
Q ss_pred cCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCC-----cceeEEecCCCCCeeEEEECcCC-CcEEEEecCCcEEEE
Q 013338 99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEG-----KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIW 171 (445)
Q Consensus 99 ~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~l~~spd~-~~l~~~~~dg~i~vw 171 (445)
...|.+++|+| ++++||+|+.|+.|+||++..... +....+ .+|...|.+++|+|++ ..+++++.|+.|++|
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 45799999999 999999999999999999965321 233444 5799999999999997 467777889999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEee--cccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
|+... .....+ ..|. ..|.+++|+|++++|++++.| |.|++||+++++...
T Consensus 160 d~~~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 160 DVGTG-------------------------AAVLTLGPDVHP-DTIYSVDWSRDGALICTSCRD-KRVRVIEPRKGTVVA 212 (402)
T ss_dssp ETTTT-------------------------EEEEEECTTTCC-SCEEEEEECTTSSCEEEEETT-SEEEEEETTTTEEEE
T ss_pred ECCCC-------------------------CccEEEecCCCC-CceEEEEECCCCCEEEEEecC-CcEEEEeCCCCceee
Confidence 99832 234445 5564 899999999999999999999 799999999887755
Q ss_pred ee--cCCCC-eeEEEEcCCCCEEEEE---ecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 250 IR--RGFGG-LSILKWSPTGDYFFAA---KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 250 ~~--~~~~~-v~~~~~sp~g~~l~~~---~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.. .|.+. +.+++|+|++++|+++ +.|+.|++||+++.+. .....+...+.+++|+|+++++++++..++.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 43 55554 8999999999999999 7899999999998764 22235677899999999999998777667777
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..|++..... ....+..+.....|.+++|+|++.++++ .+ +.+++|++.++++.
T Consensus 293 ~i~d~~~~~~---------~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~------~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 293 RYFEITSEAP---------FLHYLSMFSSKESQRGMGYMPKRGLEVN--KC------EIARFYKLHERKCE 346 (402)
T ss_dssp EEEEECSSTT---------CEEEEEEECCSSCCSEEEECCGGGSCGG--GT------EEEEEEEEETTEEE
T ss_pred EEEEecCCCc---------ceEeecccccCCcccceEEeccccccee--cc------eeEEEEEcCCCcEE
Confidence 7777643210 0112223332238999999999998875 34 78999999986543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=238.70 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=165.7
Q ss_pred cCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 141 SDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
.+|...|++|+|+|... .|++++.||.|+|||+...... ....+.+|. +.|++++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------------------~~~~~~gH~-~~V~~l~ 171 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------------------TFIKGIGAG-GSITGLK 171 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------------------EEECCCSSS-CCCCEEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------------------eEEEccCCC-CCEEEEE
Confidence 35888999999999544 5667778999999999744322 222355675 8999999
Q ss_pred ECC-CCCeEEEEEecCCeEEEEEccCCCceeeecC---CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCC
Q 013338 220 WGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 295 (445)
Q Consensus 220 ~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 295 (445)
|+| ++++|++++.| |+|++||++++....+..+ ...+.+++|+|++++|++|+.||.|++||+++.....+..|.
T Consensus 172 f~p~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~ 250 (435)
T 4e54_B 172 FNPLNTNQFYASSME-GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHK 250 (435)
T ss_dssp ECSSCTTEEEEECSS-SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred EeCCCCCEEEEEeCC-CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence 998 78999999999 7999999987755444433 346789999999999999999999999999887777888999
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
..|++++|+|+++.++++++.++.+..|++.... ....+....+|. .|++++|+|+|++|++++.|
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~----------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D--- 317 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR----------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQK--- 317 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC----------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEeccccc----------ccceEEEeeeccccccceeECCCCCeeEEEcCC---
Confidence 9999999999998666555566666666653221 111223345677 89999999999999999988
Q ss_pred ccceEEEEEEccCCCee
Q 013338 375 IYKGLIAIYDARRTPLI 391 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~ 391 (445)
+.|+|||+.++...
T Consensus 318 ---~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 318 ---SEIRVYSASQWDCP 331 (435)
T ss_dssp ---SCEEEEESSSSSSE
T ss_pred ---CEEEEEECCCCccc
Confidence 99999999987665
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-29 Score=237.07 Aligned_cols=275 Identities=13% Similarity=0.189 Sum_probs=215.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+ +.+|++|+.|+.|++|++. +++....+ .+|...|.+++|++ +.+++++.|+.|++||+...
T Consensus 159 ~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~-- 229 (445)
T 2ovr_B 159 TGGVWSSQMR--DNIIISGSTDRTLKVWNAE--TGECIHTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG-- 229 (445)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSC--
T ss_pred CCCEEEEEec--CCEEEEEeCCCeEEEEECC--cCcEEEEE-CCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCC--
Confidence 4579999997 6799999999999999985 35555555 57999999999964 57899999999999999832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
.+...+.+|. ..|.+++| +++++++++.| |.|++||+++++... +..|...|
T Consensus 230 -----------------------~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 230 -----------------------QCLHVLMGHV-AAVRCVQY--DGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp -----------------------CEEEEEECCS-SCEEEEEE--CSSCEEEEETT-SCEEEEEGGGTEEEEEECCCSSCE
T ss_pred -----------------------cEEEEEcCCc-ccEEEEEE--CCCEEEEEcCC-CEEEEEECCCCcEeEEecCCCCce
Confidence 2344566775 79999999 78899999999 799999999887654 44578899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++| +++++++++.|+.|++||+++++. ..+..|...+.++.++ ++++++++ .++.+..|++.
T Consensus 283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~---------- 347 (445)
T 2ovr_B 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIK---------- 347 (445)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETT----------
T ss_pred EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECC----------
Confidence 99999 889999999999999999999887 5567888888888774 56777664 34555555542
Q ss_pred cCccccccccccC---CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 337 LPVDLPDIVSLTG---SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 337 ~~~~~~~~~~~~~---~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
+.+.+..+.. |. .|++++|+ +++|++++.| |.|++||+.+++.+.........+|...|++++|+
T Consensus 348 ---~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 416 (445)
T 2ovr_B 348 ---TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 416 (445)
T ss_dssp ---TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred ---CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEEEec
Confidence 3344455554 55 79999995 6899999988 99999999998766321111113678889999999
Q ss_pred ecCCCCCCCeEEEEecCee----eEeeeeeee
Q 013338 413 FHDKFKQGPLLSVCWSSGF----CCTYPLIFR 440 (445)
Q Consensus 413 pdg~~~~~~~l~~~~~~G~----v~~~~~~~~ 440 (445)
|+|. ++++|..+|. +.+|+|...
T Consensus 417 ~~~~-----~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 417 NTKL-----VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEE-----EEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEE-----EEEEcccCCCCccEEEEEECCCC
Confidence 9976 4889988996 888888654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=245.28 Aligned_cols=255 Identities=11% Similarity=0.119 Sum_probs=185.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|+| .++.+.+|+. ++.. .+...|...|.+++|||+|..+++++.||.|++|+..
T Consensus 53 ~~v~~V~FsPdg-------~~~~~~~~~~---~~~~--~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~----- 115 (588)
T 2j04_A 53 KNLFHVKEFPLE-------FENKLDFELA---QQNG--LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN----- 115 (588)
T ss_dssp GGTEEEEEECCC-------CCCTTTTSCC---CSSC--SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-----
T ss_pred ccEEEEEECCCC-------CcceEEEEeC---CCce--EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-----
Confidence 458999999999 4555555443 3332 2223568899999999999999999999999999965
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCC----CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--------
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG----EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-------- 247 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-------- 247 (445)
.++..+. |+. ..+.+++|||||++|++|+.| |+|++||+.++..
T Consensus 116 ----------------------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-GtVkIWd~~~~~l~~~~~i~l 171 (588)
T 2j04_A 116 ----------------------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-GELQFFSIRKNSENTPEFYFE 171 (588)
T ss_dssp ----------------------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT-SEEEEEECCCCTTTCCCCEEE
T ss_pred ----------------------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC-CEEEEEECCCCccccccceee
Confidence 1344445 431 259999999999999999999 7999999998753
Q ss_pred eee----ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc----cc-cCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 248 TPI----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PW-SSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 248 ~~~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
..+ .+|...|.+++|+|+| +++++.|++|++||+.+++.. .+ ..|...|.+++|+ ++.|+++++ +
T Consensus 172 ~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~--~ 245 (588)
T 2j04_A 172 SSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP--G 245 (588)
T ss_dssp EEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS--S
T ss_pred eeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC--C
Confidence 233 3466799999999999 888899999999999987753 24 3677899999999 688887742 4
Q ss_pred eEEEEEeccCCCCccccccCcccccccccc-CCC-ccceEEe--CCCCCEEEEEEcCCCcccceEEEEEEccC------C
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARR------T 388 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~--sp~g~~l~~~s~d~~d~~d~~i~vwd~~~------~ 388 (445)
.+..|++ .......+. +|. .+.+++| +||++.|++++++ |+ ++|..+. +
T Consensus 246 tIkLWd~--------------~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed------G~-klw~~d~~~~spd~ 304 (588)
T 2j04_A 246 YVHKIDL--------------KNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT------SY-KVLLEDELHVTADN 304 (588)
T ss_dssp EEEEEET--------------TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC------EE-EEEESSSEEEECCC
T ss_pred eEEEEEC--------------CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC------CC-EEEeeccEEECCCc
Confidence 4444443 222232223 677 8999999 9999999999887 88 8888641 1
Q ss_pred Ceee------------eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEec
Q 013338 389 PLIS------------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS 428 (445)
Q Consensus 389 ~~~~------------~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~ 428 (445)
.+.. ......+.+ ...|.+++|||||+. ++++++
T Consensus 305 ~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~-----lA~~~~ 350 (588)
T 2j04_A 305 IIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYS-----IAIVYD 350 (588)
T ss_dssp SSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSE-----EEEEEE
T ss_pred eEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCE-----EEEEEe
Confidence 1000 000111222 334789999999874 666653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=247.45 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=200.3
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc-CCCcEEEEecCCcEEEEccCCCCCcccccc
Q 013338 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRS 184 (445)
Q Consensus 106 ~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 184 (445)
.|+|+++.+++++ .|+. +++.+..+..+|.+.|++++|+| ++..|++++.|+.|++||+..........
T Consensus 34 ~f~~~~~~~~~~~------~w~~---~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~- 103 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL---RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS- 103 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC---CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-
T ss_pred hcCCccccccccc------cccc---cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-
Confidence 4678888887654 3663 57777777578999999999999 98889999999999999987311000000
Q ss_pred ccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc---CCCceeee----------
Q 013338 185 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA---QGLGTPIR---------- 251 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~---~~~~~~~~---------- 251 (445)
....+ .| ...|.+++|+|++++|++++.| |.|++||+. .++.....
T Consensus 104 ------------------~~~~~-~h-~~~v~~~~~~~~~~~l~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 104 ------------------SSLTY-DC-SSTVTQITMIPNFDAFAVSSKD-GQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp ------------------CSEEE-EC-SSCEEEEEECTTSSEEEEEETT-SEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred ------------------eeeec-cC-CCCEEEEEEeCCCCEEEEEeCC-CEEEEEEeccccCCceeeccccceeEEEEc
Confidence 00111 34 4899999999999999999999 799999995 44332211
Q ss_pred -c--CCCCeeEEE--EcCCCCEEEEEecCCeEEEEeCCCCCc-ccccC--CCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 252 -R--GFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS--TSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 252 -~--~~~~v~~~~--~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~--~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
. +...+.++. +++++++|++++.|+.|++||+++++. ..+.. |...|++++|+|++++|++++. ++.+..|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iw 241 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIW 241 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEE
Confidence 1 456677777 668899999999999999999999887 44444 7889999999999999997744 3445554
Q ss_pred EeccCCCCccccccCcccccccccc-CCC-ccceEEe----CCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAW----DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~----sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
++. ....+..+. .|. .|.+++| +|++++|++++.| +.|++||+++++.. .
T Consensus 242 d~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~-----~ 297 (437)
T 3gre_A 242 DIR-------------FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQ-----Y 297 (437)
T ss_dssp ETT-------------TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEE-----E
T ss_pred EcC-------------CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEE-----E
Confidence 432 334445443 455 8999955 4578899999888 99999999987654 3
Q ss_pred eeeCCCCCCCceeEeecCCC--------------------CCCCeEEEEecCeeeEeeeee
Q 013338 398 FIRGPGDNPKPVAFSFHDKF--------------------KQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 398 ~~~~~~~~v~~v~~spdg~~--------------------~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.+|...+..+.|+|+++. ..+.+|+.|..+|.|.+|++.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC
Confidence 45555555555555554411 112467888889999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=237.27 Aligned_cols=236 Identities=13% Similarity=0.109 Sum_probs=175.0
Q ss_pred CeeEEEEccCCCEEEEE-----------ECCCeEEEEEccCCCCcceeEE------ecCCCCCeeEEEECcCCCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFI-----------SGSTQVIVRDYEDSEGKDACIL------TSDSQRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~-----------~~d~~i~iw~~~~~~~~~~~~~------~~~~~~~v~~l~~spd~~~l~~~~ 163 (445)
.|.++++ ++..+++| +.|+.+++|+++.......... ...+...+++++|||||+.+++++
T Consensus 75 ~v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 75 SPTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred ceEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 3555554 45566655 3577899999875443221111 112445689999999988877654
Q ss_pred --cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEE
Q 013338 164 --CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD 241 (445)
Q Consensus 164 --~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd 241 (445)
.|++|+|||+... .+...+. |. ..|.+++|+|||++|++++.+ .+++|+
T Consensus 153 ~~~d~~i~iwd~~~~-------------------------~~~~~~~-~~-~~V~~v~fspdg~~l~s~s~~--~~~~~~ 203 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDL-------------------------TEKFEIE-TR-GEVKDLHFSTDGKVVAYITGS--SLEVIS 203 (365)
T ss_dssp SCSSCEEEEEETTTT-------------------------EEEEEEE-CS-SCCCEEEECTTSSEEEEECSS--CEEEEE
T ss_pred CCCCCEEEEeECCCC-------------------------cEEEEeC-CC-CceEEEEEccCCceEEeccce--eEEEEE
Confidence 4799999999832 2333343 43 689999999999999998854 677777
Q ss_pred ccCCCcee---eecCCCCeeEEEEcCCCCEEEEEecCC----eEEEEeCCCCCc-----ccccCCCCCeeEEEECCCCCe
Q 013338 242 VAQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRM 309 (445)
Q Consensus 242 ~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg----~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~~~~ 309 (445)
..++.... ...|...|.+++|+|+++++++++.|+ .+++||+..... ..+..|...|++++|+|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc
Confidence 77776533 234677899999999999999999887 688999877654 245578889999999999999
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
|++++. ++.+..|++. +.+.+.. +.+|. .|++++|+|||++||++|.| ++|+|||+..
T Consensus 284 lasgs~-D~~V~iwd~~-------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D------~tvrvw~ip~ 343 (365)
T 4h5i_A 284 AVLASN-DNSIALVKLK-------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA------NTIHIIKLPL 343 (365)
T ss_dssp EEEEET-TSCEEEEETT-------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT------SEEEEEECCT
T ss_pred eEEEcC-CCEEEEEECC-------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC------CeEEEEEcCC
Confidence 997754 3445544432 4455655 47888 89999999999999999998 9999999964
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=254.58 Aligned_cols=253 Identities=17% Similarity=0.182 Sum_probs=203.8
Q ss_pred ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEE
Q 013338 140 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS 219 (445)
Q Consensus 140 ~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (445)
..+|.+.|++++|+|+++.+++++.||.|++|++.. ..+.....+.+|. ..|++++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-----------------------~~~~~~~~l~~h~-~~V~~l~ 60 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------ETHKLIDTLTGHE-GPVWRVD 60 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-----------------------TEEEEEEEECCCS-SCEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-----------------------CCCccceeccCCc-CceEEEE
Confidence 358999999999999999999999999999999871 1334666788886 8999999
Q ss_pred ECCC--CCeEEEEEecCCeEEEEEccCCCc---eeeecCCCCeeEEEEcCC--CCEEEEEecCCeEEEEeCCCCCc---c
Q 013338 220 WGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---E 289 (445)
Q Consensus 220 ~sp~--~~~l~~~~~d~g~v~vwd~~~~~~---~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~---~ 289 (445)
|+|+ +++|++++.| |.|++||+.+++. .....|...|.+++|+|+ ++++++++.||.|++||++++.. .
T Consensus 61 ~s~~~~~~~l~s~s~D-g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~ 139 (753)
T 3jro_A 61 WAHPKFGTILASCSYD-GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139 (753)
T ss_dssp ECCTTSCSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred ecCCCCCCEEEEEeCC-CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence 9988 9999999999 7999999998852 345568899999999999 99999999999999999998743 3
Q ss_pred cccCCCCCeeEEEECC-------------CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce
Q 013338 290 PWSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 355 (445)
.+..|...|.+++|+| +++++++++. ++.+..|++..... .......+.+|. .|++
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~---------~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGCCEEEEET-TSCEEEEEEETTTT---------EEEEEEEECCCSSCEEE
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-CCeEEEEeccCCcc---------cceeeeeecCCCCcEEE
Confidence 4558889999999999 5788886643 45566666543210 123455677888 8999
Q ss_pred EEeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 356 IAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 356 ~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
++|+|+ +++|++++.| |.|++||+.+++...........+|...|++++|+|+|++ ++++..+|.|
T Consensus 210 l~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-----l~s~s~Dg~I 278 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKV 278 (753)
T ss_dssp EEECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-----EEEECSSSCE
T ss_pred EEeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-----EEEEcCCCEE
Confidence 999999 8999999988 9999999998643222223344568899999999999885 7778889999
Q ss_pred Eeeeee
Q 013338 433 CTYPLI 438 (445)
Q Consensus 433 ~~~~~~ 438 (445)
.+|++.
T Consensus 279 ~vwd~~ 284 (753)
T 3jro_A 279 TLWKEN 284 (753)
T ss_dssp ECCBCC
T ss_pred EEEecC
Confidence 999986
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=224.86 Aligned_cols=237 Identities=17% Similarity=0.189 Sum_probs=187.4
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|++++|++++.|+.+++|++.............+|...|.+++| +++.+++++.|+.|++||..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~----- 132 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG----- 132 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-----
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-----
Confidence 46999999999999999999999999998754332323333579999999999 45688899999999999932
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v 257 (445)
.....+..|. ..+.+++|+| +++.+++++.| |.|++||.... ...+.. +...+
T Consensus 133 ----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~-~~~~~~~~~~~i 187 (313)
T 3odt_A 133 ----------------------SLVYNLQAHN-ASVWDAKVVSFSENKFLTASAD-KTIKLWQNDKV-IKTFSGIHNDVV 187 (313)
T ss_dssp ----------------------EEEEEEECCS-SCEEEEEEEETTTTEEEEEETT-SCEEEEETTEE-EEEECSSCSSCE
T ss_pred ----------------------cEEEecccCC-CceeEEEEccCCCCEEEEEECC-CCEEEEecCce-EEEEeccCcccE
Confidence 2344566675 8999999988 89999999999 79999994332 223333 78899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++|+|++. +++++.|+.|++||+++++. ..+..|...|++++|+|++. +++++ .++. +.+|+..
T Consensus 188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~-~dg~---v~iwd~~------- 254 (313)
T 3odt_A 188 RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG-EDRT---VRIWSKE------- 254 (313)
T ss_dssp EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEE-TTSE---EEEECTT-------
T ss_pred EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEe-cCCE---EEEEECC-------
Confidence 9999999998 99999999999999998887 55668999999999999995 55453 3344 4555432
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+.+..+..|. .|.+++|+|+++ +++++.| +.|++||+++++..
T Consensus 255 ---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~iw~~~~~~~~ 300 (313)
T 3odt_A 255 ---NGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD------NLVRIFSQEKSRWA 300 (313)
T ss_dssp ---TCCEEEEEECSSSCEEEEEECTTSC-EEEEETT------SCEEEEESCGGGCC
T ss_pred ---CCceeEEEeccCceEEEEEEccCCC-EEEEeCC------CcEEEEeCCCCcee
Confidence 445566777777 899999999998 5567777 89999999986654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-28 Score=227.34 Aligned_cols=270 Identities=14% Similarity=0.097 Sum_probs=204.6
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.++++++.|+.|++||+. +++....+. +...+.+++|+|+++.+++++ .++.|++||+...
T Consensus 3 ~l~vs~~~d~~v~v~d~~--~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-------------- 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVT--SNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN-------------- 64 (391)
T ss_dssp EEEEEETTTTEEEEEETT--TTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------------
T ss_pred EEEEEcCCCCEEEEEECC--CCeEEEEee--cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC--------------
Confidence 467788899999999985 465555543 345689999999988775555 6899999998722
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEE-
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF- 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l- 269 (445)
.+...+..+ ..+.+++|+|++++|++++.+++.|++||+.+++......+...+.+++|+|++++|
T Consensus 65 -----------~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 65 -----------NVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLY 131 (391)
T ss_dssp -----------EEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEE
T ss_pred -----------eEEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEE
Confidence 233344444 489999999999988776654479999999999887777777889999999999987
Q ss_pred EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 270 FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 270 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
++++.++.|++||+.+++..........+.+++|+|++++++++...++.+..|++. ..+.+..+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-------------~~~~~~~~~~ 198 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-------------TNSVIDTVKV 198 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-------------TTEEEEEEEC
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-------------CCeEEEEEec
Confidence 678889999999999988754444456779999999999997776666666666643 2233344444
Q ss_pred CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecC
Q 013338 350 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS 429 (445)
Q Consensus 350 ~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~ 429 (445)
+..+.+++|+|+|++|++++.+..+ +.|++||+.+++.+ ..+..|. .+.+++|+|+|++ ++..+..+
T Consensus 199 ~~~~~~~~~~~~g~~l~~~~~~~~~---~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~----l~~s~~~d 265 (391)
T 1l0q_A 199 EAAPSGIAVNPEGTKAYVTNVDKYF---NTVSMIDTGTNKIT-----ARIPVGP-DPAGIAVTPDGKK----VYVALSFX 265 (391)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSC---CEEEEEETTTTEEE-----EEEECCS-SEEEEEECTTSSE----EEEEETTT
T ss_pred CCCccceEECCCCCEEEEEecCcCC---CcEEEEECCCCeEE-----EEEecCC-CccEEEEccCCCE----EEEEcCCC
Confidence 4478999999999999998852222 89999999987654 3455444 4688999999875 33455678
Q ss_pred eeeEeeeee
Q 013338 430 GFCCTYPLI 438 (445)
Q Consensus 430 G~v~~~~~~ 438 (445)
|.|.+|++.
T Consensus 266 ~~v~v~d~~ 274 (391)
T 1l0q_A 266 NTVSVIDTA 274 (391)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEECC
Confidence 899888764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-29 Score=228.42 Aligned_cols=277 Identities=9% Similarity=0.072 Sum_probs=194.7
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEE-EecCCcEEEEccCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPG 177 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~-~~~dg~i~vw~~~~~~ 177 (445)
...|++++|+|||++||+|+.++ ++||+++. ++..... +...+..+++.++++.+++ ++.|+.|++||....
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~- 91 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP--VAHIMSQ---EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK- 91 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETT--EEEEEEE---ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTT-
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCC--cceeeee---ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCC-
Confidence 45799999999999999887665 78999853 3333222 2235888999988777644 455689999998732
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-CceeeecCCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGG 256 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~~~~~ 256 (445)
.++..+. +. ..|.+++|+++. ++++ .+ +.|++||+.++ +....... .
T Consensus 92 ------------------------~~~~~~~-~~-~~v~~v~~~~~~--~~~~-~~-~~i~i~d~~~~~~~~~~~~~--~ 139 (355)
T 3vu4_A 92 ------------------------QDVSRIK-VD-APVKDLFLSREF--IVVS-YG-DVISVFKFGNPWKRITDDIR--F 139 (355)
T ss_dssp ------------------------EEEEEEE-CS-SCEEEEEECSSE--EEEE-ET-TEEEEEESSTTCCBSSCCEE--E
T ss_pred ------------------------cEEEEEE-CC-CceEEEEEcCCE--EEEE-Ec-CEEEEEECCCCceeeEEecc--C
Confidence 2333344 33 689999999864 4443 46 59999999987 44332222 4
Q ss_pred eeEEEEcCCCCEEEE--EecCCeEEEEeCCCCC-----------------cccccCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 257 LSILKWSPTGDYFFA--AKFDGTFYLWETNTWT-----------------SEPWSSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 257 v~~~~~sp~g~~l~~--~~~dg~v~iwd~~~~~-----------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
...+++++ .++++ ++.||.|++||+++++ ...+..|...|++++|+|++++|++++. +
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-D 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-C
Confidence 44566777 66666 5789999999999866 4567789999999999999999997744 3
Q ss_pred ceEEEEEeccCCCCccccccCcccccccccc-C-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS 394 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~ 394 (445)
+. .+++|+.. +.+.+..+. + |. .|++++|+|+|++|++++.| ++|++||++.+......
T Consensus 217 ~~--~v~iwd~~----------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~~~~~~~~ 278 (355)
T 3vu4_A 217 GT--IIRVFKTE----------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFNDQDNKRH 278 (355)
T ss_dssp CS--EEEEEETT----------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT------CEEEEEESSCCSCCCSE
T ss_pred CC--EEEEEECC----------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC------CEEEEEEccCCCCcccc
Confidence 33 14444432 455666776 4 77 89999999999999999988 99999999765322111
Q ss_pred eee---------------e--e-eCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeee
Q 013338 395 LIG---------------F--I-RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR 440 (445)
Q Consensus 395 ~~~---------------~--~-~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~ 440 (445)
.+. . + ..+......++|+|||++ +.++..+|.+..|.+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-----l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-----VVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-----EEEETTTTEEEEEEEEEE
T ss_pred cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-----EEEEeCCCeEEEEEEEcC
Confidence 100 0 0 112223467899999774 788888999999987653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-28 Score=231.72 Aligned_cols=260 Identities=13% Similarity=0.172 Sum_probs=208.8
Q ss_pred EccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccc
Q 013338 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA 186 (445)
Q Consensus 107 ~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 186 (445)
++++|++|++|+.||.|++|++. +++....+ .+|...|.+++|++ +.+++++.||.|++||+...
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~--~~~~~~~~-~~h~~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~~---------- 189 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAV--TGKCLRTL-VGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETG---------- 189 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETT--TCCEEEEC-CCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTT----------
T ss_pred EEEcCCEEEEEECCCcEEEEECC--CCcEEEEE-cCCCCCEEEEEecC--CEEEEEeCCCeEEEEECCcC----------
Confidence 55579999999999999999985 46555555 57999999999983 58889999999999999722
Q ss_pred ccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCC
Q 013338 187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPT 265 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~ 265 (445)
.+...+.+|. ..|.+++|+ ++.+++++.| |.|++||+.+++... +..|...|.+++| +
T Consensus 190 ---------------~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 190 ---------------ECIHTLYGHT-STVRCMHLH--EKRVVSGSRD-ATLRVWDIETGQCLHVLMGHVAAVRCVQY--D 248 (445)
T ss_dssp ---------------EEEEEECCCS-SCEEEEEEE--TTEEEEEETT-SEEEEEESSSCCEEEEEECCSSCEEEEEE--C
T ss_pred ---------------cEEEEECCCC-CcEEEEEec--CCEEEEEeCC-CEEEEEECCCCcEEEEEcCCcccEEEEEE--C
Confidence 3455677775 799999995 5689999999 799999999887654 5567899999999 7
Q ss_pred CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 266 GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 266 g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
+++|++++.|+.|++||+++++. ..+..|...+.+++| ++.++++++. ++.+..|++. +.+.+
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~i~d~~-------------~~~~~ 312 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVE-------------TGNCI 312 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET-TSCEEEEETT-------------TCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC-CCeEEEEECC-------------CCCEE
Confidence 88999999999999999998876 556688899999999 7888887643 4455555542 44556
Q ss_pred ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC---CCCCCCceeEeecCCCCCC
Q 013338 345 VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKFKQG 420 (445)
Q Consensus 345 ~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~v~~v~~spdg~~~~~ 420 (445)
..+.+|. .+.++.+ ++++|++++.| +.|++||+++++.+ ..+.+ |...|++++|++
T Consensus 313 ~~~~~~~~~v~~~~~--~~~~l~~~~~d------g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~------- 372 (445)
T 2ovr_B 313 HTLTGHQSLTSGMEL--KDNILVSGNAD------STVKIWDIKTGQCL-----QTLQGPNKHQSAVTCLQFNK------- 372 (445)
T ss_dssp EEECCCCSCEEEEEE--ETTEEEEEETT------SCEEEEETTTCCEE-----EEECSTTSCSSCEEEEEECS-------
T ss_pred EEEcCCcccEEEEEE--eCCEEEEEeCC------CeEEEEECCCCcEE-----EEEccCCCCCCCEEEEEECC-------
Confidence 6777777 7777776 57799999988 99999999987755 34444 788899999853
Q ss_pred CeEEEEecCeeeEeeeee
Q 013338 421 PLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 421 ~~l~~~~~~G~v~~~~~~ 438 (445)
.+++.|..+|.|.+|++.
T Consensus 373 ~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 268888899999999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=237.16 Aligned_cols=254 Identities=10% Similarity=0.127 Sum_probs=187.4
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC----------
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN---------- 211 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 211 (445)
.+.+.|++++|+|++..|++++.||.|+||++......... ....+.+...+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------~~~~~~~~~~~~~h~~~~~~~~~~~ 91 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH--------------SRGEYNVYSTFQSHEPEFDYLKSLE 91 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC--------------CCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------cccceeEeccccccccccccccccc
Confidence 36789999999999989999999999999999844321111 112345677778774
Q ss_pred -CCceeEEEECCCC--CeEEEEEecCCeEEEEEccCCCce----------------------------------------
Q 013338 212 -GEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGT---------------------------------------- 248 (445)
Q Consensus 212 -~~~v~~~~~sp~~--~~l~~~~~d~g~v~vwd~~~~~~~---------------------------------------- 248 (445)
...|.+++|+|++ ..|++++.| |.|++||+.++...
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTND-KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECS-SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCC-CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 2679999999998 789999999 79999999764321
Q ss_pred e-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-Ccc--------cccCCCCCeeEEEECCCC-CeEEEEEcCC
Q 013338 249 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TSE--------PWSSTSGFVTGATWDPEG-RMILLAFAGS 317 (445)
Q Consensus 249 ~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~~--------~~~~~~~~v~~~~~sp~~-~~l~~~~~~~ 317 (445)
. ...|...|.+++|+|++++|+++ .|+.|++||+++. +.. .+..|...|++++|+|++ ++|++++ .+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d 248 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SK 248 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TT
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CC
Confidence 1 24578899999999999999998 7999999999943 322 355889999999999998 7777664 44
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-------------ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+.+..|++..... ....+..+..|. .|.+++|+|+|++|++++. +.|++||
T Consensus 249 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~v~iwd 312 (447)
T 3dw8_B 249 GTIRLCDMRASAL---------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-------LSVKVWD 312 (447)
T ss_dssp SCEEEEETTTCSS---------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-------SEEEEEE
T ss_pred CeEEEEECcCCcc---------ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-------CeEEEEe
Confidence 5555555432210 000123333332 7999999999999998864 6899999
Q ss_pred ccC-CCeeeeeeeeeeeCCCCCC---------------CceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 385 ARR-TPLISLSLIGFIRGPGDNP---------------KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 385 ~~~-~~~~~~~~~~~~~~~~~~v---------------~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++. ++.+ ..+.+|...+ ..++|+|+|++ |+.|..+|.|.+|++.
T Consensus 313 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-----l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 313 LNMENRPV-----ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-----VMTGSYNNFFRMFDRN 372 (447)
T ss_dssp TTCCSSCS-----CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-----EEEECSTTEEEEEETT
T ss_pred CCCCcccc-----ceeeccccccccccccccccccccceEEEECCCCCE-----EEEeccCCEEEEEEcC
Confidence 986 5443 4666675322 24899999875 7888899999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=216.04 Aligned_cols=238 Identities=17% Similarity=0.304 Sum_probs=192.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.|++|+||+++ +++.+..+ .+|...+.++.+. +..+++++.++.+++|+......
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~-~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~- 141 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH- 141 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETT--TTEEEEEE-ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC-
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecC--CceeEEEe-cCccceEEEeecC--CCEEEEEecCCceEeeecCCCce-
Confidence 469999999999999999999999999985 46665555 4788888776654 45778888889999998773221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----eeeecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-----~~~~~~~ 254 (445)
....+.+|. ..+..+.+++++++|++++.| |.|++||+++++. .....+.
T Consensus 142 -----------------------~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 142 -----------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp -----------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEESSCBTTBSCCSEEECCCC
T ss_pred -----------------------eEEEEcCcc-CceEEEEEcCCCCEEEEEecC-cceeEEECCCCcccccceeeecccC
Confidence 344566675 799999999999999999999 7999999987654 2344567
Q ss_pred CCeeEEEEcCCCCEE---EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCC
Q 013338 255 GGLSILKWSPTGDYF---FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP 330 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l---~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~ 330 (445)
+.|.+++++|++..+ ++++.++.|++||.+.........+...+..+.|+|+++.++++.. .++.+..|++.
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~---- 272 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP---- 272 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT----
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC----
Confidence 889999999986644 3566789999999999888777778888999999999999887643 44555555432
Q ss_pred CccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.+.+.++.+|. .|++++|+|||++|++++.| ++|+|||+..
T Consensus 273 ---------~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D------~~v~iWd~~~ 315 (318)
T 4ggc_A 273 ---------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFE 315 (318)
T ss_dssp ---------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSC
T ss_pred ---------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCC
Confidence 556778889999 89999999999999999998 9999999875
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=222.53 Aligned_cols=247 Identities=12% Similarity=0.068 Sum_probs=192.8
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|++++|+|++..+++++.|+.|++|++...... .....+..|. ..|.+++|
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~~~-~~v~~~~~ 64 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------VDLLQSLRYK-HPLLCCNF 64 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------EEEEEEEECS-SCEEEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------ccceeeeecC-CceEEEEE
Confidence 479999999999999888999999999999999843211 1223344564 89999999
Q ss_pred CCCCC-eEEEEEecCCeEEEEEc-cCCCceeeec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC---------CC
Q 013338 221 GPDGR-YLASASYESSSFTIWDV-AQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT---------WT 287 (445)
Q Consensus 221 sp~~~-~l~~~~~d~g~v~vwd~-~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~---------~~ 287 (445)
+|+++ +|++++.| |.|++||+ .+++...+.. |...|.+++|+| +++|++++.|+.|++||+++ ++
T Consensus 65 ~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 65 IDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EESSSEEEEEEETT-SCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCCCcEEEEEcCC-CeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 99999 99999999 79999999 8888877778 999999999999 99999999999999999987 66
Q ss_pred cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc-CCCCccccccCccccccccccCCC-ccceEEeCC-CCCE
Q 013338 288 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGER 364 (445)
Q Consensus 288 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~ 364 (445)
......+...+.+++|+|++ ++++. .++.+..|++.. . ..........+. .+.+++|+| ++++
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 143 NSNNTKVKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCE-----------DDNGTIEESGLKYQIRDVALLPKEQEG 208 (342)
T ss_dssp CSSSSSSCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCT-----------TCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred eeeEEeeCCceEEEEecCCc--EEEEe-CCCeEEEEECCccc-----------cccceeeecCCCCceeEEEECCCCCCE
Confidence 54444588999999999987 55443 345555555432 1 011112223444 799999999 9999
Q ss_pred EEEEEcCCCcccceEEEEEEccCC--CeeeeeeeeeeeCCCC---------CCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGD---------NPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~---------~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
|++++.+ +.|++|+++.. ... ......+.+|.. .|++++|+|++++ |+.+..+|.|.
T Consensus 209 l~~~~~d------g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-----l~~~~~dg~i~ 276 (342)
T 1yfq_A 209 YACSSID------GRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSDGIIS 276 (342)
T ss_dssp EEEEETT------SEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETTSCEE
T ss_pred EEEEecC------CcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEcCCCCE-----EEEecCCceEE
Confidence 9999988 99999999875 100 112235566654 8999999999875 77888999999
Q ss_pred eeeee
Q 013338 434 TYPLI 438 (445)
Q Consensus 434 ~~~~~ 438 (445)
+|++.
T Consensus 277 vwd~~ 281 (342)
T 1yfq_A 277 CWNLQ 281 (342)
T ss_dssp EEETT
T ss_pred EEcCc
Confidence 99875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=231.93 Aligned_cols=298 Identities=9% Similarity=0.044 Sum_probs=189.1
Q ss_pred CCeeEEEEc---cCCCEEEEEECCCeEEEEEccCCCCc-----c-eeEEecCCCCCeeEEEEC-----------------
Q 013338 100 VDLQGVSWH---QHKHIVAFISGSTQVIVRDYEDSEGK-----D-ACILTSDSQRDVKVLEWR----------------- 153 (445)
Q Consensus 100 ~~v~~~~~s---p~g~~la~~~~d~~i~iw~~~~~~~~-----~-~~~~~~~~~~~v~~l~~s----------------- 153 (445)
....++.|. |++..++.++.++.|.+|+....... . .......+...+..+.|+
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN 95 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence 345667774 44444555556888999986432110 0 011111234445555544
Q ss_pred ---cCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--------
Q 013338 154 ---PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-------- 222 (445)
Q Consensus 154 ---pd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------- 222 (445)
+++..+++++.|++|+|||+....... ......+.+|. +.|++++|+|
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~--------------------~~~~~~~~gH~-~~v~~v~~~p~~~~~~~~ 154 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIIT--------------------QHVLGGKSGHH-NFVNDIDIADVYSADNRL 154 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEE--------------------EEEECTTTSCS-SCEEEEEEEEEECTTCSE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccce--------------------eeeecccCCCC-CceEEEEEccccccccCC
Confidence 344456777789999999987332211 12344577886 8999999998
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCC-EEEEEecCCeEEEEeCCCCCccc----------
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---------- 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~---------- 290 (445)
|+++|++++.| ++|+|||+.++.. .....|...+.+++|+|++. +|++++.|++|++||+++++...
T Consensus 155 d~~~las~s~D-~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 155 AEQVIASVGDD-CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEETT-SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCEEEEEECC-CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 88999999999 6999999987654 55678899999999999874 79999999999999998875411
Q ss_pred ----------------ccCCCCCeeEEEEC-CCCCeEEEEEcCCceEEEEEeccCCCCccc--cccCc----cccccccc
Q 013338 291 ----------------WSSTSGFVTGATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDA--HLLPV----DLPDIVSL 347 (445)
Q Consensus 291 ----------------~~~~~~~v~~~~~s-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~ 347 (445)
...|...+.++.|+ ++++.|+++ ..+..+..|++......... +.... .....+..
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-CTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEE-eCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence 12466778888886 799988865 34455555554322111000 00000 00111122
Q ss_pred cCCCccceEEeCC--CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE
Q 013338 348 TGSQGIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 425 (445)
Q Consensus 348 ~~~~~v~~~~~sp--~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~ 425 (445)
..+.......|+| ++.++++++.| +.|++||+.+++.. ....+|..+|++++|||||++ |++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~D------g~V~lwd~~~~~~~-----~~~~~~~~~V~svafspdG~~-----LA~ 376 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQH------GLIQLINTYEKDSN-----SIPIQLGMPIVDFCWHQDGSH-----LAI 376 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTT------TEEEEEETTCTTCC-----EEEEECSSCEEEEEECTTSSE-----EEE
T ss_pred cccCcceeEEEccCCCCEEEEEECCC------CEEEEEECCCCcEE-----EEecCCCCcEEEEEEcCCCCE-----EEE
Confidence 2223333444444 33455666666 99999999987765 245568889999999999885 888
Q ss_pred EecCeeeEeeee
Q 013338 426 CWSSGFCCTYPL 437 (445)
Q Consensus 426 ~~~~G~v~~~~~ 437 (445)
+.++|. .++.+
T Consensus 377 as~~Gv-~lvrL 387 (393)
T 4gq1_A 377 ATEGSV-LLTRL 387 (393)
T ss_dssp EESSEE-EEEEE
T ss_pred EeCCCe-EEEEE
Confidence 876664 44444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=217.14 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=186.5
Q ss_pred CeeEEEEccCCCEE-EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.+.+++|+|+|++| ++++.|+.|++||+. +++....+. +...+.+++|+|+++++++++. ++.|++||+...
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~--~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-- 106 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTA--TNNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-- 106 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETT--TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECC--CCeEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC--
Confidence 58899999999987 566689999999985 466555554 3448999999999888877765 599999999832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE-EEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
.....+..+ ..+.+++|+|+++.|+ +++.+ +.|++||+.+++..........+
T Consensus 107 -----------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~~ 160 (391)
T 1l0q_A 107 -----------------------TVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-KTVSVINTVTKAVINTVSVGRSP 160 (391)
T ss_dssp -----------------------EEEEEEECS--SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECCSSE
T ss_pred -----------------------eEEEEEeCC--CCcceEEECCCCCEEEEEeCCC-CEEEEEECCCCcEEEEEecCCCc
Confidence 123333433 5789999999999884 55556 79999999998877766667788
Q ss_pred eEEEEcCCCCEE-EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEc--CCceEEEEEeccCCCCccc
Q 013338 258 SILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 258 ~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 334 (445)
.+++|+|++++| ++++.++.|++||+++++......+...+.+++|+|++++++++.. .+..+..|++.
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~-------- 232 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG-------- 232 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT--------
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC--------
Confidence 999999999988 5777889999999999887655566778999999999999998764 34444444432
Q ss_pred cccCccccccccccCCCccceEEeCCCCCEEEEE-EcCCCcccceEEEEEEccCCCeee
Q 013338 335 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS-YKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
..+.+..+..+..+.+++|+|+|++|+++ +.+ +.|++||+.++++..
T Consensus 233 -----~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 233 -----TNKITARIPVGPDPAGIAVTPDGKKVYVALSFX------NTVSVIDTATNTITA 280 (391)
T ss_dssp -----TTEEEEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEE
T ss_pred -----CCeEEEEEecCCCccEEEEccCCCEEEEEcCCC------CEEEEEECCCCcEEE
Confidence 33445556666678899999999988554 444 899999999877653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=222.78 Aligned_cols=242 Identities=15% Similarity=0.197 Sum_probs=179.8
Q ss_pred CcCCeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC---cEEEEecCCcEEEEcc
Q 013338 98 PEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG---RSLSVGCKGGICIWAP 173 (445)
Q Consensus 98 ~~~~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~---~l~~~~~dg~i~vw~~ 173 (445)
+...|.+++|+| ++.+|++++.|+.|++|++.. ++....+ .+...+.++.|+|.+. .+++++.++.|++||+
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT--LQTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT--TEEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC--Cccceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 456899999999 788999999999999999853 5544444 3778899999998543 6888888999999999
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCc--eee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLG--TPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~--~~~ 250 (445)
..... ...+..|. ..|.+++|+|+++. +++++.| |.|++||++.+.. ..+
T Consensus 174 ~~~~~-------------------------~~~~~~~~-~~v~~~~~~~~~~~ll~~~~~d-g~i~i~d~~~~~~~~~~~ 226 (408)
T 4a11_B 174 KSGSC-------------------------SHILQGHR-QEILAVSWSPRYDYILATASAD-SRVKLWDVRRASGCLITL 226 (408)
T ss_dssp SSSCC-------------------------CEEECCCC-SCEEEEEECSSCTTEEEEEETT-SCEEEEETTCSSCCSEEC
T ss_pred CCcce-------------------------eeeecCCC-CcEEEEEECCCCCcEEEEEcCC-CcEEEEECCCCCcccccc
Confidence 84322 23355665 79999999999985 7888888 7999999987642 111
Q ss_pred ---------------ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-C-----C-CCCeeEEEECCCCC
Q 013338 251 ---------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-S-----T-SGFVTGATWDPEGR 308 (445)
Q Consensus 251 ---------------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~-----~-~~~v~~~~~sp~~~ 308 (445)
..|...|.+++|+|++++|++++.|+.|++||+++++..... . . ......+.......
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
T 4a11_B 227 DQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE 306 (408)
T ss_dssp CTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred cccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCce
Confidence 356788999999999999999999999999999988763221 1 1 11122222333344
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++++ . ++.+..|++. +...+..+.+|. .|++++|+|++++|++++.| |.|++||+++
T Consensus 307 ~~~~~-~-~~~i~v~d~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~ 365 (408)
T 4a11_B 307 FVFVP-Y-GSTIAVYTVY-------------SGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD------CNILAWVPSL 365 (408)
T ss_dssp EEEEE-E-TTEEEEEETT-------------TCCEEEEECCCSSCEEEEEEETTTTEEEEEETT------SCEEEEEECC
T ss_pred EEEEe-c-CCEEEEEECc-------------CCcceeeeccCCCeEEEEEEcCCCCEEEEECCC------CeEEEEeCCC
Confidence 44433 2 2444444432 456677788888 89999999999999999988 9999999998
Q ss_pred CCee
Q 013338 388 TPLI 391 (445)
Q Consensus 388 ~~~~ 391 (445)
++.+
T Consensus 366 ~~~~ 369 (408)
T 4a11_B 366 YEPV 369 (408)
T ss_dssp ----
T ss_pred CCcc
Confidence 7655
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=225.94 Aligned_cols=281 Identities=13% Similarity=0.078 Sum_probs=206.9
Q ss_pred CCeeEEEEccCCC-EEEEEE----CCC----eEEEEEc--cCCCCccee-EEecCCCCCeeEEEECc-------------
Q 013338 100 VDLQGVSWHQHKH-IVAFIS----GST----QVIVRDY--EDSEGKDAC-ILTSDSQRDVKVLEWRP------------- 154 (445)
Q Consensus 100 ~~v~~~~~sp~g~-~la~~~----~d~----~i~iw~~--~~~~~~~~~-~~~~~~~~~v~~l~~sp------------- 154 (445)
..+...+|++.|. .+++|+ .+| .++|||+ .. ++.+. ....+|...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP--GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST--TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC--CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4678889999885 555776 567 8999998 54 44432 22346888888888775
Q ss_pred -CCCcEEEEecC------CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 155 -NGGRSLSVGCK------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 155 -d~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
.+.++++++.+ +.|++||+.. ... ..+..|. ..+.+++|+|||++|
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-------------------------~~l~~~~-~~v~~~~~Spdg~~l 193 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ-------------------------FVVHRSP-QPLMSPAWSPDGSKL 193 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSC-------------------------EEEEEES-SCEEEEEECTTSSEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCC-------------------------EEEeCCC-CcceeeEEcCCCCEE
Confidence 14677777764 6899999872 221 2234454 789999999999999
Q ss_pred EEEEecC--CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCC--eEEEEeCCCCCcccccCCCCCeeEEE
Q 013338 228 ASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSSTSGFVTGAT 302 (445)
Q Consensus 228 ~~~~~d~--g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~~~ 302 (445)
++++.++ ..|++||+.+++...+..+...+.+++|+|||++|+ +++.++ .|++||+.+++...+..+...+.+++
T Consensus 194 a~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 194 AYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT 273 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEE
T ss_pred EEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceE
Confidence 9999873 389999999998888888888999999999999888 666555 59999999998888888888999999
Q ss_pred ECCCCCeEEEEEcCCc--eEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceE
Q 013338 303 WDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL 379 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~ 379 (445)
|+|||++|+++...++ .++.+++. ......+..+. .+.+++|+|||++|++++.+..+ ..
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~--------------~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~---~~ 336 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNIN--------------GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ---QH 336 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETT--------------SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC---EE
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECC--------------CCCEEEEecCCCcccCeEECCCCCEEEEEECcCCc---eE
Confidence 9999999998765443 44444432 22233344444 68899999999999998865332 78
Q ss_pred EEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe--eeEeeee
Q 013338 380 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG--FCCTYPL 437 (445)
Q Consensus 380 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G--~v~~~~~ 437 (445)
|++||+.+++.. .+..+. .+.+++|+|||++ ++..+..+| .|..+++
T Consensus 337 i~~~d~~~~~~~------~l~~~~-~~~~~~~spdg~~----l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 337 IAKQDLATGGVQ------VLSSTF-LDETPSLAPNGTM----VIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEETTTCCEE------ECCCSS-SCEEEEECTTSSE----EEEEEEETTEEEEEEEET
T ss_pred EEEEECCCCCEE------EecCCC-CcCCeEEcCCCCE----EEEEEcCCCccEEEEEEC
Confidence 999999987754 334443 7899999999985 333333344 5555553
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=224.31 Aligned_cols=257 Identities=8% Similarity=0.020 Sum_probs=191.4
Q ss_pred cCCeeEEEEccCCCEE-EEEECCCeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~l-a~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|++++|+|+|++| |+++.|+.|+||++...++.....+. ..|...|++++|+|++..|++++.++.+++|++...
T Consensus 102 ~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 102 YSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred CCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence 4579999999999996 88889999999999632455555543 257789999999999988999999999999998744
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC---CCeEEEEEecCCeEEEEEccCCCcee--ee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTP--IR 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~vwd~~~~~~~~--~~ 251 (445)
..... ....+.+|. ..|++++|+|+ +++|++++.| |.|++||+.+++... ..
T Consensus 182 ~~~~~---------------------~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 182 PEEKF---------------------TQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRD-EHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp CCSSC---------------------CCCCSEECS-SCEEEEEEEECTTSCEEEEEEETT-SCEEEEEESCTTCEEEECC
T ss_pred ccccc---------------------cceeeeccc-CceEEEEEcCCCCCCcEEEEEcCC-CcEEEEECCCCceeeeeec
Confidence 32210 111245564 79999999999 9999999999 799999999887654 33
Q ss_pred cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-------------------------CCCCCeeEEEECC
Q 013338 252 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-------------------------STSGFVTGATWDP 305 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-------------------------~~~~~v~~~~~sp 305 (445)
.|...|.+++|+ ++++|++++.|+.|++||+++++.. .+. .....+.+++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 688999999999 9999999999999999999998752 221 2235689999999
Q ss_pred CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 306 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
++++|++++..++.+..|++.+... .....+..+..+..|.+++|+|++.++++++.+.....+..|.+|.+
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~--------~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQK--------GDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSST--------TCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCC--------CceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 9999998876667777777621100 01244556666678999999996543333332210001256888877
Q ss_pred cC
Q 013338 386 RR 387 (445)
Q Consensus 386 ~~ 387 (445)
+.
T Consensus 390 ~~ 391 (450)
T 2vdu_B 390 NL 391 (450)
T ss_dssp ET
T ss_pred Ec
Confidence 53
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=222.98 Aligned_cols=239 Identities=14% Similarity=0.099 Sum_probs=160.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE--EecCCCCCeeEEEECc--------CCCcEEEEecCCcEEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--LTSDSQRDVKVLEWRP--------NGGRSLSVGCKGGICI 170 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~v~~l~~sp--------d~~~l~~~~~dg~i~v 170 (445)
.+....+++++.+||+++.|++|+||+.+..+...... ...+|.+.|++++|+| |++.|++++.|++|+|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~ 170 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII 170 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence 45556677888999999999999999986432111111 2358999999999998 7778888899999999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
||+.... ....+..|+ ..|.+++|+|++. +|++++.| |+|++||+++++...
T Consensus 171 Wd~~~~~-------------------------~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d-~~v~~wd~~t~~~~~ 223 (393)
T 4gq1_A 171 WRLTDEG-------------------------PILAGYPLS-SPGISVQFRPSNPNQLIVGERN-GNIRIFDWTLNLSAE 223 (393)
T ss_dssp EEEETTE-------------------------EEEEEEECS-SCEEEEEEETTEEEEEEEEETT-SEEEEEETTCCC---
T ss_pred EECCCCc-------------------------eeeeecCCC-CCcEEEEECCCCCceEEecCCC-CEEEEEECCCCcccc
Confidence 9997321 233345565 7999999999875 78899988 799999998764311
Q ss_pred --------------------------eecCCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCee--
Q 013338 250 --------------------------IRRGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT-- 299 (445)
Q Consensus 250 --------------------------~~~~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~-- 299 (445)
...|...+.+++|+ |+++.|++++.|+++++||+..++. ..+..+...+.
T Consensus 224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK 303 (393)
T ss_dssp -------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred cccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE
Confidence 12345678899986 7999999999999999999987654 22222222222
Q ss_pred ----------------EEEEC-CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCC
Q 013338 300 ----------------GATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS 361 (445)
Q Consensus 300 ----------------~~~~s-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~ 361 (445)
...|+ +.+..++++++.++.+..|++. ....+..+..|. .|.+++|+||
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~-------------~~~~~~~~~~~~~~V~svafspd 370 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY-------------EKDSNSIPIQLGMPIVDFCWHQD 370 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT-------------CTTCCEEEEECSSCEEEEEECTT
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC-------------CCcEEEEecCCCCcEEEEEEcCC
Confidence 22333 3455566666666666665543 333444455566 8999999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEEcc
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
|++||+++.+ | +.+|.+.
T Consensus 371 G~~LA~as~~------G-v~lvrL~ 388 (393)
T 4gq1_A 371 GSHLAIATEG------S-VLLTRLM 388 (393)
T ss_dssp SSEEEEEESS------E-EEEEEEG
T ss_pred CCEEEEEeCC------C-eEEEEEe
Confidence 9999999865 4 6777664
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-26 Score=215.52 Aligned_cols=255 Identities=16% Similarity=0.174 Sum_probs=191.4
Q ss_pred CCEEEEEECC------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC---cEEEEccCCCCCccc
Q 013338 111 KHIVAFISGS------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYPGNAAS 181 (445)
Q Consensus 111 g~~la~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg---~i~vw~~~~~~~~~~ 181 (445)
+..+++++.+ +.|++||++ +.....+ .+|...+.+++|+|||+.+++++.++ .|++||+.....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~---g~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--- 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD---GYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--- 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT---SCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---
T ss_pred CCEEEEEEecCCCCccceEEEEcCC---CCCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---
Confidence 6677776654 799999985 3333444 35888999999999999999888774 999999983321
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE-EecC-CeEEEEEccCCCceeeecCCCCeeE
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYES-SSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~-g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
..+..+. ..+.+++|+|||+.|+.. +.++ ..|++||+.+++...+..+...+.+
T Consensus 216 -----------------------~~l~~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~ 271 (415)
T 2hqs_A 216 -----------------------RQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTE 271 (415)
T ss_dssp -----------------------EEEECCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEE
T ss_pred -----------------------EEeecCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccc
Confidence 1233443 689999999999988854 4441 2599999999888777788889999
Q ss_pred EEEcCCCCEEEEEecC-C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 260 LKWSPTGDYFFAAKFD-G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~d-g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
++|+|+|++|++++.+ + .|++||+.+++...+..+...+.+++|+|+|++|+++...++ ...+.+|+..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~~------- 343 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLA------- 343 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETT-------
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-ceEEEEEECC-------
Confidence 9999999999888764 4 788889999887767677778999999999999997765422 2334444321
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
......+..+..+.+++|+|||++|++++.++.. ..|++||+..+... .+.+|.+.|++++|+|--.
T Consensus 344 ----~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~---~~l~~~d~~g~~~~------~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 344 ----TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKA------RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTE---EEEEEEETTSCCEE------ECCCSSSEEEEEEECCCCC
T ss_pred ----CCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCc---cEEEEEECCCCcEE------EeeCCCCCCcCCccccccc
Confidence 1222334444478999999999999998876322 38999999865443 5778889999999999765
Q ss_pred C
Q 013338 417 F 417 (445)
Q Consensus 417 ~ 417 (445)
+
T Consensus 411 ~ 411 (415)
T 2hqs_A 411 H 411 (415)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=215.96 Aligned_cols=243 Identities=15% Similarity=0.237 Sum_probs=185.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++| ++++|++|+.||.|++||+.. ++....+ .+|...|.+++|++ +.+++++.|+.|++||+.....
T Consensus 173 ~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~--~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 173 TGSVLCLQY--DERVIITGSSDSTVRVWDVNT--GEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEESSS--CCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC
T ss_pred CCcEEEEEE--CCCEEEEEcCCCeEEEEECCC--CcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC
Confidence 457899988 889999999999999999954 5555555 57999999999985 4888999999999999984322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
. .....+.+|. ..|.+++| ++++|++++.| |.|++||+++++... +..|...|
T Consensus 246 ~----------------------~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v 299 (435)
T 1p22_A 246 I----------------------TLRRVLVGHR-AAVNVVDF--DDKYIVSASGD-RTIKVWNTSTCEFVRTLNGHKRGI 299 (435)
T ss_dssp C----------------------EEEEEECCCS-SCEEEEEE--ETTEEEEEETT-SEEEEEETTTCCEEEEEECCSSCE
T ss_pred c----------------------eeeeEecCCC-CcEEEEEe--CCCEEEEEeCC-CeEEEEECCcCcEEEEEcCCCCcE
Confidence 1 1234466675 89999999 78899999999 799999999987754 45678899
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
.+++| +++++++++.||.|++||+++++. ..+..|...|.+++| ++++|++++ .++.+..|++.......
T Consensus 300 ~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~---- 370 (435)
T 1p22_A 300 ACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPR---- 370 (435)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTT----
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcc----
Confidence 99999 578999999999999999999887 567789999999999 678888664 44566666654221100
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.......+..+.+|. .|.+++| ++++|++++.| |.|++||+.+....
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D------g~i~iwd~~~~~~~ 418 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD------DTILIWDFLNDPAA 418 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS------SEEEEEC-------
T ss_pred ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC------CEEEEEECCCCCCc
Confidence 000112466777888 8999999 78899999887 99999999875543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=210.78 Aligned_cols=236 Identities=11% Similarity=0.033 Sum_probs=174.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccC-------CCCcceeEEecCCCCCeeEEEECc--CCCcEEEEecCCcEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-------SEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICI 170 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~-------~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~dg~i~v 170 (445)
..|.++.|+|+ +++++.|++|++|+.+. .+++.+.....+|...|.+++|+| ++..+++++.|+.|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 46778888888 89999999999997642 133434455557888999999999 9888888999999999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-- 248 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-- 248 (445)
||+..... ......++...+.+++|+|++++|++|+.| |.|++||+++++..
T Consensus 154 wd~~~~~~-------------------------~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-g~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 154 QSYEDDSQ-------------------------YIVHSAKSDVEYSSGVLHKDSLLLALYSPD-GILDVYNLSSPDQASS 207 (343)
T ss_dssp EESSSSCE-------------------------EEEECCCSSCCCCEEEECTTSCEEEEECTT-SCEEEEESSCTTSCCE
T ss_pred EECCCCcE-------------------------EEEEecCCCCceEEEEECCCCCEEEEEcCC-CEEEEEECCCCCCCcc
Confidence 99983322 222333444679999999999999999999 79999999998765
Q ss_pred eeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccC---CCCCee--EEEECCCCCeEEEEEcCCceEE
Q 013338 249 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSS---TSGFVT--GATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 249 ~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~---~~~~v~--~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.+.. |...|.+++|+|++.+|++++ ++.|++||+++.+.. .+.. +...+. +++|+|++++|++++.++..+.
T Consensus 208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~ 286 (343)
T 3lrv_A 208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT 286 (343)
T ss_dssp ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence 4555 789999999999999999999 559999999988762 2322 333443 6999999999998766466666
Q ss_pred EEEeccCCCCccccccCccccccccccCCCccceEEeCC---CCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA---SGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
.|++.... + .... ..+..++|++ +++.+++++.| +.+.++-...
T Consensus 287 v~~~~~~~------------~-~~~~---~~~~~~~~~~~~~~~~~l~~~~~d------~~~~~~~~~~ 333 (343)
T 3lrv_A 287 IYKFDKKT------------K-NWTK---DEESALCLQSDTADFTDMDVVCGD------GGIAAILKTN 333 (343)
T ss_dssp EEEECTTT------------C-SEEE---EEEEECCC----CCCCEEEEEEET------TEEEEEEECS
T ss_pred EEEEcccc------------c-ceEe---cCceeEecCccccccceeEEEecC------CceEEEEecC
Confidence 66653211 0 0000 2467788888 88999999888 7788776443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=212.32 Aligned_cols=241 Identities=11% Similarity=0.044 Sum_probs=189.1
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
..|.+++|+|+++++++++.|+.|++|+++ +++....+ ..|...+.+++|+|+++.+++++ .++.|++||+...
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-- 244 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLK--TLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-- 244 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETT--TCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECC--CceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--
Confidence 368999999999999999999999999985 35555554 36888999999999988887766 5799999998732
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe--------cCCeEEEEEccCCCceee
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--------ESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------d~g~v~vwd~~~~~~~~~ 250 (445)
.....+..+ ..+.+++|+|+++.|++++. | |.|++||+.+++....
T Consensus 245 -----------------------~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~d-g~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 245 -----------------------LEIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESGG-GRLGIYSMDKEKLIDT 298 (433)
T ss_dssp -----------------------EEEEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSCC-EEEEEEETTTTEEEEE
T ss_pred -----------------------cEEEEecCC--CCceEEEEcCCCCEEEEEECCCCccccCC-CeEEEEECCCCcEEee
Confidence 123334333 46899999999999999884 5 6999999998877776
Q ss_pred ecCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCce----------
Q 013338 251 RRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT---------- 319 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~---------- 319 (445)
..+...+.+++|+|+++.+ ++++.++.|++||+.+++......+...+.+++|+|++++++++......
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 6667789999999999865 56688999999999988775555577889999999999999887654221
Q ss_pred -EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEc-CCCcccceEEEEEEccC
Q 013338 320 -LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARR 387 (445)
Q Consensus 320 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~~ 387 (445)
++.+.+|+.. +.+.+..+..+..+.+++|+|+|++|++++. + +.|++|+++.
T Consensus 379 ~dg~v~~~d~~----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d------~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTT----------TDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD------HQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETT----------TTEEEEEEECSSSEEEEEECTTSCEEEEEETTT------TEEEEEEETT
T ss_pred cceEEEEEECC----------CCcEEEEecCCCCCceEEEcCCCCEEEEEECCC------CeEEEEEecC
Confidence 2344444432 3344445555557899999999999998875 5 8999999863
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=206.54 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=183.4
Q ss_pred EEecCCCCCeeEEEECcC---CCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCc
Q 013338 138 ILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ 214 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (445)
....+|.+.|++++|+|+ |..+++++.||.|++|++...+. .+...+.+|. ..
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~h~-~~ 88 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------------------TIPKAQQMHT-GP 88 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------------------EEEEEEEECS-SC
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------------------eeEEEecccc-CC
Confidence 344689999999999999 47888888899999999983221 2334566775 89
Q ss_pred eeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEE--cCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW--SPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
|.+++|+|++++|++++.| |.|++||+.+++......|...|.+++| +|++++|++++.|+.|++||+++++.....
T Consensus 89 v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp EEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred EEEEEECcCCCEEEEEcCC-CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 9999999999999999999 7999999999988888889999999999 899999999999999999999998874444
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE----EEEE
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER----LAVS 368 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~----l~~~ 368 (445)
.....+.++.+.++ .++++.. +..+..|++..... ..........+ .+..+++.++... ++++
T Consensus 168 ~~~~~~~~~~~~~~--~~~~~~~-~~~i~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 168 QLPERCYCADVIYP--MAVVATA-ERGLIVYQLENQPS---------EFRRIESPLKH-QHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp ECSSCEEEEEEETT--EEEEEEG-GGCEEEEECSSSCE---------EEEECCCSCSS-CEEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCceEEEecCC--eeEEEeC-CCcEEEEEeccccc---------hhhhccccccC-CCceEEEcccCCCCCCeEEEe
Confidence 44456777777654 5554433 34455555432110 00011111112 3445555444443 8999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC------------CCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD------------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.+ +.|++|+++..... .....+.+|.. .|++++|+|++++ |+.+..+|.|.+|+
T Consensus 235 ~~d------g~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 235 SIE------GRVAIHYINPPNPA--KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATVGSDGRFSFWD 301 (368)
T ss_dssp ETT------SEEEEEESSCSCHH--HHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-----EEEEETTSCEEEEE
T ss_pred cCC------CcEEEEecCCCCcc--ccceeeeeeecccccccccccccceEEEEEecCCCE-----EEEEccCCeEEEEE
Confidence 888 99999999876321 12335556654 7999999999875 77888999999998
Q ss_pred ee
Q 013338 437 LI 438 (445)
Q Consensus 437 ~~ 438 (445)
+.
T Consensus 302 ~~ 303 (368)
T 3mmy_A 302 KD 303 (368)
T ss_dssp TT
T ss_pred CC
Confidence 75
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-25 Score=213.64 Aligned_cols=310 Identities=10% Similarity=0.032 Sum_probs=210.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc----CCCcEEEEec-CCcEEEEccC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP----NGGRSLSVGC-KGGICIWAPS 174 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp----d~~~l~~~~~-dg~i~vw~~~ 174 (445)
..+.+++|+|||++|++++.|+.|++||+...+++.+..+. +...+..++|+| ||+++++++. +++|.+||..
T Consensus 179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 35889999999999999999999999999433466555554 556789999999 9888888775 7999999987
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~ 252 (445)
+......+..... .......|....+..+.++|++..+++...+.|.|.+||+.+.+... ...
T Consensus 257 t~~~~~~i~~~g~---------------~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~ 321 (543)
T 1nir_A 257 TLEPKQIVSTRGM---------------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 321 (543)
T ss_dssp TCCEEEEEECCEE---------------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE
T ss_pred ccccceeecccCc---------------ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec
Confidence 4433322221100 00000013334789999999887766665555899999998765533 334
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccc-cc----CCCCCeeEEEECCCCCeEEEEE-cCCceEEEEEe
Q 013338 253 GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAF-AGSLTLGSIHF 325 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~-~~~~~~~~~~~ 325 (445)
+...+.+++|+|+|++|++++ .+++|.+||+.++++.. +. .|.+....+ ++|++..++++. ..+..+..|++
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence 567788999999999876554 58899999999998733 22 244433333 477744444343 34556666665
Q ss_pred ccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCc-ccceEEEEEEccCCCee-eeeeeee---e
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRTPLI-SLSLIGF---I 399 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d-~~d~~i~vwd~~~~~~~-~~~~~~~---~ 399 (445)
...... ...++.++++..|. .+..++++|+|++|++++..+.+ ..+++|.|||+.+++.. ...++.. +
T Consensus 401 ~~~~~~------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~ 474 (543)
T 1nir_A 401 DPKNHP------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 474 (543)
T ss_dssp CTTTCT------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred CCCCCc------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc
Confidence 321000 11267788888887 78999999999999998632110 12379999999988765 2222222 2
Q ss_pred eCCCCCCCceeEeecCCCCCCCeEEEEe----cCeeeEeeee
Q 013338 400 RGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYPL 437 (445)
Q Consensus 400 ~~~~~~v~~v~~spdg~~~~~~~l~~~~----~~G~v~~~~~ 437 (445)
..+...+..+.|+|||++ ++...| .++.|.+|+.
T Consensus 475 ~~~~~~~~~~~~~~~g~~----~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CSSCCEEEEEEECSSSSE----EEEEEECCTTSCCEEEEEET
T ss_pred CCCCCceEeccCCCCCCE----EEEEeecCCCCCCeEEEEEC
Confidence 345677899999999997 344445 3688888764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=201.79 Aligned_cols=241 Identities=14% Similarity=0.061 Sum_probs=166.2
Q ss_pred cccccccccccccccccccCCCcCCcC-------cCCeeEEEEccC----CCEEEEEECCCeEEEEEccCCCCcceeEEe
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLP-------EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSEGKDACILT 140 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~sp~----g~~la~~~~d~~i~iw~~~~~~~~~~~~~~ 140 (445)
.....+++|...++...+.|....++. ...|++++++|| ++++++++.+ +++|++. +++.+....
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~--~g~lv~ss~ 152 (356)
T 2w18_A 77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT--KRRLVSSSG 152 (356)
T ss_dssp EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEET--TTEEEEEES
T ss_pred eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecC--CCcEEEecc
Confidence 456777888777788888886665553 247999999999 9999987744 7788763 354444433
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+|.+.|..++|+|+|+.+. .+.+|. ..++.++|
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~---------------------------------------------s~~~~~-~~v~~l~f 186 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKE---------------------------------------------NQFLMP-PEETILTF 186 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEE---------------------------------------------EEEECC-CSSCEEEE
T ss_pred cCCCCcEEEEEECCCCceee---------------------------------------------eeccCC-CceeeEEe
Confidence 45666666666666643222 133343 67888899
Q ss_pred CC---CCCeEEEEEecCCeEEEEEccCCCceeee-cCC---CCeeEEEEcCCCCEE------------EEEecCCeEEEE
Q 013338 221 GP---DGRYLASASYESSSFTIWDVAQGLGTPIR-RGF---GGLSILKWSPTGDYF------------FAAKFDGTFYLW 281 (445)
Q Consensus 221 sp---~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~---~~v~~~~~sp~g~~l------------~~~~~dg~v~iw 281 (445)
+| ++.+|++++.| ++|+|||+++++..... .|. ..+.+++|+|+|+++ ++|+.|++|++|
T Consensus 187 s~~~g~~~~LaSgS~D-~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 187 AEVQGMQEALLGTTIM-NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEETSTTEEEEEETT-SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eccCCCCceEEEecCC-CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 98 77999999999 69999999999875544 333 467788999999987 567789999999
Q ss_pred eCCCCCcccc------cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccc
Q 013338 282 ETNTWTSEPW------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE 354 (445)
Q Consensus 282 d~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 354 (445)
|..+++.... .+|...+.+..++ +.+++++ +.++.++.|++. +++.+.++.+|. .+.
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg-S~DgTIkIWDl~-------------tGk~l~tL~gH~~~vv 329 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI-LTSGTIAIWDLL-------------LGQCTALLPPVSDQHW 329 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE-ETTSCEEEEETT-------------TCSEEEEECCC--CCC
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE-cCCCcEEEEECC-------------CCcEEEEecCCCCCeE
Confidence 9999876321 2444444444443 6666654 344555555542 567788888887 554
Q ss_pred -eEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 355 -KIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 355 -~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.++|+|||++|++|+.| ++|+|||+
T Consensus 330 s~vafSPDG~~LaSGS~D------~TIklWd~ 355 (356)
T 2w18_A 330 SFVKWSGTDSHLLAGQKD------GNIFVYHY 355 (356)
T ss_dssp CEEEECSSSSEEEEECTT------SCEEEEEE
T ss_pred EEEEECCCCCEEEEEECC------CcEEEecC
Confidence 68999999999999988 99999996
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-25 Score=193.74 Aligned_cols=282 Identities=13% Similarity=0.060 Sum_probs=182.2
Q ss_pred CeeEEEEccCCC---EEEEEECCCeEEEEEccCCCC-cceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccC
Q 013338 101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPS 174 (445)
Q Consensus 101 ~v~~~~~sp~g~---~la~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~ 174 (445)
++.++.|-.-|- .+++++ ...|++|+...... +...+. ..|..+|..+.+.||-..|+.+.-. ..-.++.+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 577888866543 566555 67899999864211 333333 5788899999999997777776543 111222222
Q ss_pred CCCCccccccccccccccccCCCC-CceEEEEeecccCCCceeEEEECCCCCeEEEEE--ecCCeEEEEEccC-CCc-ee
Q 013338 175 YPGNAASVRSGAASFLGALSRGPG-TRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQ-GLG-TP 249 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~g~v~vwd~~~-~~~-~~ 249 (445)
..++ ..+.......+|. ..|..+ ++++++.+++ .| +.|++|++.. ++. ..
T Consensus 119 --------------------~spd~~~~~~~l~s~g~~-~~v~~l---~~g~lv~ss~~g~d-~~V~~~~~s~dG~~~~s 173 (356)
T 2w18_A 119 --------------------CSSDDESEKQVLLKSGNI-KAVLGL---TKRRLVSSSGTLSD-QQVEVMTFAEDGGGKEN 173 (356)
T ss_dssp --------------------C------CCEEEEEEEEE-EEEEEE---TTTEEEEEESSSTT-CEEEEEEECTTSCEEEE
T ss_pred --------------------ECCCccccccEEEeCCCe-EEEEec---CCCcEEEecccCCC-CcEEEEEECCCCceeee
Confidence 1111 0011111112332 445544 5666666643 47 6999999954 544 34
Q ss_pred eecCCCCeeEEEEcC---CCCEEEEEecCCeEEEEeCCCCCc-ccccCCC---CCeeEEEECCCCCeEEEEEc-------
Q 013338 250 IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS---GFVTGATWDPEGRMILLAFA------- 315 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~---~~v~~~~~sp~~~~l~~~~~------- 315 (445)
...|...+..++|+| ++..|++++.|++|+|||++++++ ..+..|. ..+.+++|+|+|++++++..
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 567888899999999 789999999999999999999987 4555443 35677899999998865431
Q ss_pred -CCceEEEEEeccCCCCccccccCccccccccc-----cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 316 -GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-----TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
....++.+++|+.. +.+.+..+ .+|. .+.+..+ ++.++|+++.| ++|+|||+.++
T Consensus 254 aSGs~D~tIklWd~~----------tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D------gTIkIWDl~tG 315 (356)
T 2w18_A 254 SLRSPVFQLIVINPK----------TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS------GTIAIWDLLLG 315 (356)
T ss_dssp ----CCEEEEEEETT----------TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT------SCEEEEETTTC
T ss_pred eccCCCcEEEEEECC----------CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC------CcEEEEECCCC
Confidence 11345666666543 22222221 2443 3333333 37789999888 99999999998
Q ss_pred CeeeeeeeeeeeCCCCCCC-ceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 389 PLISLSLIGFIRGPGDNPK-PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~-~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+++ .++.+|...+. .++|||||++ |+.|..||.|.+|++
T Consensus 316 k~l-----~tL~gH~~~vvs~vafSPDG~~-----LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCT-----ALLPPVSDQHWSFVKWSGTDSH-----LLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEE-----EEECCC--CCCCEEEECSSSSE-----EEEECTTSCEEEEEE
T ss_pred cEE-----EEecCCCCCeEEEEEECCCCCE-----EEEEECCCcEEEecC
Confidence 876 46778887665 5899999885 788889999999985
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-24 Score=196.56 Aligned_cols=283 Identities=12% Similarity=0.134 Sum_probs=191.6
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
.+++++.++.|++|+++. ++.........+...+.+++|+|+++.+++++.+ +.|.+|++.....
T Consensus 7 l~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~------------- 72 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH-EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG------------- 72 (343)
T ss_dssp EEEEEGGGTEEEEEEECT-TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-------------
T ss_pred EEEeCCCCCeEEEEEECC-CCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-------------
Confidence 344447899999999964 3433222223477789999999998888888876 9999999872211
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC---CceeeecCCCCeeEEEEcCCCCE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---LGTPIRRGFGGLSILKWSPTGDY 268 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~---~~~~~~~~~~~v~~~~~sp~g~~ 268 (445)
.+..+..+..+ ..+..++|+|++++|++++.+++.|.+||+..+ +..........+.+++|+|+|++
T Consensus 73 --------~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 73 --------ALTFAAESALP--GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT 142 (343)
T ss_dssp --------CEEEEEEEECS--SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred --------ceeeccccccC--CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence 11223333333 378899999999999888764479999999533 33334445567999999999998
Q ss_pred EEEEe-cCCeEEEEeCCC-CCcc-----ccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 269 FFAAK-FDGTFYLWETNT-WTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 269 l~~~~-~dg~v~iwd~~~-~~~~-----~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
|++++ .++.|++||+.+ ++.. ... .....+..++|+|++++++++...+..+..|++........ .
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~------~ 216 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE------C 216 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE------E
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE------E
Confidence 88877 899999999987 5542 222 23457889999999998887776666677776532111000 0
Q ss_pred ccccccccC----CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 341 LPDIVSLTG----SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 341 ~~~~~~~~~----~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...+..+.. ...+..++|+|+|++|+++... ++.|++||+. +++.. .+..+..+.. +..++|+|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s~d 287 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVDHS 287 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEECTT
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEECCC
Confidence 001111111 1156689999999998866532 1899999998 33322 2334444444 889999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
|++ +++.+..+|.|.+|.+.
T Consensus 288 g~~----l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 GKY----LIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSE----EEEECTTTCEEEEEEEE
T ss_pred CCE----EEEecCCCCeEEEEEEc
Confidence 885 33333467888888664
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-25 Score=223.57 Aligned_cols=282 Identities=12% Similarity=0.114 Sum_probs=196.2
Q ss_pred cCCeeEEEEccCCCEEEEEEC-CC-----eEEEEEccCCCCcceeEEec-CCC----------------------CCeeE
Q 013338 99 EVDLQGVSWHQHKHIVAFISG-ST-----QVIVRDYEDSEGKDACILTS-DSQ----------------------RDVKV 149 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~-d~-----~i~iw~~~~~~~~~~~~~~~-~~~----------------------~~v~~ 149 (445)
...|.+++|||||++|++++. |+ .|++|+++. ++....+.. .+. ..|.+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 446899999999999999998 88 899999853 544443321 111 23889
Q ss_pred EEECcCCCcEEEEecCCcEEEEccCCCC--CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeE
Q 013338 150 LEWRPNGGRSLSVGCKGGICIWAPSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 227 (445)
Q Consensus 150 l~~spd~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 227 (445)
++|||||+.|++++. +.|++||+.... .... +..+ ...+..++|||||++|
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------l~~~-~~~~~~~~~SPDG~~l 166 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------LTHG-EGFATDAKLSPKGGFV 166 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------CCCS-SSCEEEEEECTTSSEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------cccC-CcccccccCCCCCCEE
Confidence 999999887777765 999999998442 2211 2233 2679999999999999
Q ss_pred EEEEecCCeEEEEEccCCCceeeecCCCC-----------------eeEEEEcCCCCEEEEEecCC--------------
Q 013338 228 ASASYESSSFTIWDVAQGLGTPIRRGFGG-----------------LSILKWSPTGDYFFAAKFDG-------------- 276 (445)
Q Consensus 228 ~~~~~d~g~v~vwd~~~~~~~~~~~~~~~-----------------v~~~~~sp~g~~l~~~~~dg-------------- 276 (445)
++++ + +.|++||+.+++...+...... +.+++|+|||++|++++.|+
T Consensus 167 a~~~-~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~ 244 (741)
T 2ecf_A 167 SFIR-G-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD 244 (741)
T ss_dssp EEEE-T-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred EEEe-C-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence 9987 4 4899999998876655443222 57899999999999987765
Q ss_pred -------------------eEEEEeCCC-CCccccc---CCCCCeeEEEECCCCCeEEEEEc-CCceEEEEEeccCCCCc
Q 013338 277 -------------------TFYLWETNT-WTSEPWS---STSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSL 332 (445)
Q Consensus 277 -------------------~v~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 332 (445)
.|++||+.+ ++...+. .+...+..++| |||++|+++.. .......+.+|+..
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~--- 320 (741)
T 2ecf_A 245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA--- 320 (741)
T ss_dssp CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT---
T ss_pred cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC---
Confidence 899999998 8764443 46677899999 99999987653 22334555555542
Q ss_pred cccccCccccccccccCCC-----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCCCCCC
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~v 406 (445)
+......+..+. .+..++|+|||+++++++.+ +.++||.++ .++ . ..+..|...|
T Consensus 321 -------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~~~~~~-~-----~~l~~~~~~v 381 (741)
T 2ecf_A 321 -------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT------GFQHLYRIDSKGK-A-----AALTHGNWSV 381 (741)
T ss_dssp -------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT------SSCEEEEECSSSC-E-----EESCCSSSCE
T ss_pred -------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC------CccEEEEEcCCCC-e-----eeeeecceEE
Confidence 222222222222 34689999999988877665 666666654 222 2 2455666677
Q ss_pred Cce-eEeecCCCCCCCeEEEEecCe--eeEeeeee
Q 013338 407 KPV-AFSFHDKFKQGPLLSVCWSSG--FCCTYPLI 438 (445)
Q Consensus 407 ~~v-~~spdg~~~~~~~l~~~~~~G--~v~~~~~~ 438 (445)
..+ .|+|||+. ++..+..++ .+.+|.+.
T Consensus 382 ~~~~~~s~dg~~----l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 382 DELLAVDEKAGL----AYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EEEEEEETTTTE----EEEEECSSCTTCBEEEEEE
T ss_pred EeEeEEeCCCCE----EEEEEeCCCCceEEEEEEE
Confidence 777 59999875 334444444 66666654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-25 Score=201.85 Aligned_cols=244 Identities=9% Similarity=0.072 Sum_probs=171.9
Q ss_pred cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 141 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 141 ~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
..|...|++++|+|||..+ +++.+..+++|++... .... ..+. ..+..+++
T Consensus 16 ~~h~~~V~~v~fs~dg~~l-a~g~~~~~~iw~~~~~-------------------------~~~~--~~~~-~~~~~~~~ 66 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCL-ILSTLKSFEIYNVHPV-------------------------AHIM--SQEM-RHLSKVRM 66 (355)
T ss_dssp ---CCCCCEEEECTTSSEE-EEECSSEEEEEEETTE-------------------------EEEE--EEEC-SCCCEEEE
T ss_pred ccCCCceEEEEECCCCCEE-EEEcCCEEEEEecCCc-------------------------ceee--eeec-CCeEEEEE
Confidence 4689999999999997655 4555556899998721 1111 1111 35778889
Q ss_pred CCCCCeEEE-EEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC-Cc-ccccCCCCC
Q 013338 221 GPDGRYLAS-ASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGF 297 (445)
Q Consensus 221 sp~~~~l~~-~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~ 297 (445)
.++++.++. ++.+ ++|++||+.+++......+...|.+++|+++. ++++ .|+.|++||+.++ +. ..+.. .
T Consensus 67 ~~~~~~~~~~~~~d-~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 67 LHRTNYVAFVTGVK-EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp CTTSSEEEEECSST-TEEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred cCCCCEEEEEECCc-cEEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 998888754 5556 69999999999887777788899999998764 4444 4889999999987 44 23322 4
Q ss_pred eeEEEECCCCCeEEEE-EcCCceEEEEEeccCCCCcc--ccccCccccc-cccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 298 VTGATWDPEGRMILLA-FAGSLTLGSIHFASKPPSLD--AHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
...+++++ .+++++ +..++.+..|++........ .........+ +..+.+|. .|++++|+|+|++|++++.|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d- 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD- 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC-
Confidence 44566777 667765 55666666666543210000 0000001112 66788898 89999999999999999998
Q ss_pred CcccceE-EEEEEccCCCeeeeeeeeeee-C-CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKGL-IAIYDARRTPLISLSLIGFIR-G-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++ |++||+++++.+ ..+. + |...|++++|+|||++ |+.+..+|.|.+|++.
T Consensus 217 -----~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 217 -----GTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWSTDGSK-----LAVVSDKWTLHVFEIF 270 (355)
T ss_dssp -----CSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEECTTSCE-----EEEEETTCEEEEEESS
T ss_pred -----CCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEECCCCCE-----EEEEECCCEEEEEEcc
Confidence 87 999999987765 3566 5 9999999999999875 7888899999999975
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-24 Score=191.94 Aligned_cols=256 Identities=14% Similarity=0.113 Sum_probs=181.2
Q ss_pred EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCC
Q 013338 117 ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 117 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
++.++.|++|++.. ++... + ..|...|.+++|+|+++.++++ .++.|.+||+...+....
T Consensus 18 ~~~~~~i~~~d~~~--~~~~~-~-~~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~--------------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT--RKMRV-V-WQTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEK--------------- 77 (297)
T ss_dssp CCCCEEEEEEETTT--TEEEE-E-EEESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEE---------------
T ss_pred CCcceeEEEEeCCC--Cceee-e-ccCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceE---------------
Confidence 45788999999853 44333 2 3478899999999997766665 588999999984122111
Q ss_pred CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---CCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EE
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AA 272 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~ 272 (445)
....+....+.+++|+|++++|++++.+ ...|..|++.++....+.. ...+..++|+|++++|+ ++
T Consensus 78 ---------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 78 ---------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp ---------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEE
T ss_pred ---------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEE
Confidence 1223333678899999999999998832 1245555555665444443 34589999999999887 77
Q ss_pred ecCCeEEEEeC--CCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 273 KFDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 273 ~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
..++.++||++ .+++...+..+...+.+++|+|++++|+++...+.....+.+.. ....+..+..+
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~ 215 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV------------DGSSVERITDS 215 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------TSSCEEECCCC
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC------------CCCCcEEEecC
Confidence 78998888885 45566667777888999999999999887765444445444421 22334455556
Q ss_pred C-ccceEEeCCCCCEEEEEEcCCCcc-----cceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 351 Q-GIEKIAWDASGERLAVSYKGGDDI-----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 351 ~-~v~~~~~sp~g~~l~~~s~d~~d~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
. .+..++|+|+|++|++++.++... .++.|++||+.+++... +..+.+|...+..++|+|||++
T Consensus 216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET---LFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE---EEEEEESTTTSCSCCBCTTSSE
T ss_pred CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee---eeccCCCCcccccceECCCCCE
Confidence 6 788999999999999887653110 12679999999876542 2234467888999999999885
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-24 Score=193.47 Aligned_cols=282 Identities=8% Similarity=0.001 Sum_probs=192.2
Q ss_pred EEccCCCE-EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccc
Q 013338 106 SWHQHKHI-VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 106 ~~sp~g~~-la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~ 183 (445)
.|.+++.+ +++.+.++.|.+||.+ +++....+. .+...+ .++|+|+++.+++++. ++.|.+||+......
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---- 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD--TLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---- 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT--TCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc--ccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----
Confidence 45555544 6677789999999985 466555554 345556 9999999887877776 689999999743220
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCCCeeEEE
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILK 261 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~~v~~~~ 261 (445)
...+..+. ....+++|+|+|++++++..+++ .|.+||+.+++..........+.+++
T Consensus 76 --------------------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 134 (331)
T 3u4y_A 76 --------------------VVAIQEGQ-SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA 134 (331)
T ss_dssp --------------------EEEEEECS-SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE
T ss_pred --------------------EEecccCC-CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE
Confidence 12223332 34444999999999995444423 89999999988776666677789999
Q ss_pred EcCCCCEEEEE-ecCCe-EEEEeCCCCCcc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 262 WSPTGDYFFAA-KFDGT-FYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 262 ~sp~g~~l~~~-~~dg~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
|+|+|++|+++ ..++. |++|++...... ........+..++|+|+|++++++...+..+..|++..
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~------- 207 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN------- 207 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-------
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-------
Confidence 99999866655 45577 999998754331 22234456889999999998888877667777776532
Q ss_pred cccCccccc---cccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee-eeeCCCC---CCC
Q 013338 335 HLLPVDLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGD---NPK 407 (445)
Q Consensus 335 ~~~~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~---~v~ 407 (445)
.+. +..+..+..+..++|+|||++|++++.+ ++.|.+||+.++++.....+. .+..+.. .+.
T Consensus 208 ------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 208 ------PENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp ------TTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred ------CcccceeeeccCCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 222 4444444578899999999988877543 178999999988763221111 1111122 235
Q ss_pred ceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 408 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 408 ~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.++|+|||++ ++..+..+|.|.+|++.
T Consensus 277 ~~~~spdg~~----l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 277 QMALNKTETK----LFISANISRELKVFTIS 303 (331)
T ss_dssp CEEECTTSSE----EEEEETTTTEEEEEETT
T ss_pred ceEECCCCCE----EEEecCCCCcEEEEEec
Confidence 6899999986 34445567788888864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-23 Score=187.32 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred CCeeEEEEccCCCEEEEEECC-CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS-TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~ 177 (445)
..+.+++|+|+|++|++++.+ +.|.+|+++..+++............+..++|+|+++.+++++. ++.|.+|++. .+
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~ 116 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DG 116 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TT
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CC
Confidence 457889999999999988876 99999999743444322211122347899999999888877776 6889999985 11
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccC-CCcee-----e
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQ-GLGTP-----I 250 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~-~~~~~-----~ 250 (445)
. .......+..+ ..+.+++|+|+++++++++ .+ +.|.+||+.+ ++... .
T Consensus 117 ~---------------------~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~~~~ 172 (343)
T 1ri6_A 117 L---------------------PVGVVDVVEGL--DGCHSANISPDNRTLWVPALKQ-DRICLFTVSDDGHLVAQDPAEV 172 (343)
T ss_dssp E---------------------EEEEEEEECCC--TTBCCCEECTTSSEEEEEEGGG-TEEEEEEECTTSCEEEEEEEEE
T ss_pred c---------------------cccccccccCC--CCceEEEECCCCCEEEEecCCC-CEEEEEEecCCCceeeeccccc
Confidence 1 01123333333 4688999999999998887 66 6999999987 54432 2
Q ss_pred ec-CCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC--CCcc---c---ccC---CCCCeeEEEECCCCCeEEEEEcCC
Q 013338 251 RR-GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSE---P---WSS---TSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 251 ~~-~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~--~~~~---~---~~~---~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
.. ....+.+++|+|++++|++++ .++.|++||++. ++.. . +.. ....+..++|+|++++|+++...+
T Consensus 173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 22 345788999999999776554 789999999954 3331 1 111 123567899999999998777666
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSL 395 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~~~~ 395 (445)
+.+..|++..... ....+..+..+..+..++|+|+|++|++++.+. +.|.+|+++ ++++..
T Consensus 253 ~~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~--- 315 (343)
T 1ri6_A 253 SLITVFSVSEDGS---------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHE--- 315 (343)
T ss_dssp TEEEEEEECTTSC---------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEE---
T ss_pred CEEEEEEEcCCCC---------ceEEeeeecCCCccceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeE---
Confidence 7777777642110 112233333334588999999999999887431 899999654 554432
Q ss_pred eeeeeCCCCCCCceeEeecCC
Q 013338 396 IGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~ 416 (445)
+..+.. .....+++|.|+.+
T Consensus 316 ~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 316 KGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEC-SSSCCEEEEEEEC-
T ss_pred cccccc-CCCCeeEEEEcccC
Confidence 333433 34577899988754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-23 Score=191.55 Aligned_cols=279 Identities=15% Similarity=0.168 Sum_probs=185.5
Q ss_pred CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccC
Q 013338 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSR 195 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
.++.|.+|.++..+++........+...+..++|+|||+ +++++. ++.|.+|++...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g------------------- 73 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ------------------- 73 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-------------------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-------------------
Confidence 456799999987666654433334566788899999977 777665 489999999621
Q ss_pred CCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-CCCceeee--cC----------CCCeeEEEE
Q 013338 196 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGLGTPIR--RG----------FGGLSILKW 262 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~-~~~~~~~~--~~----------~~~v~~~~~ 262 (445)
....+..+..+. ..+..++|+|+|++|++++..++.|.+|++. ++....+. .+ ...+.+++|
T Consensus 74 ----~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 74 ----TAHKLNTVVAPG-TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp ----EEEEEEEEEEES-CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred ----cEEEeeeeecCC-CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE
Confidence 112333333343 6788999999999999988544799999996 33332221 11 124888999
Q ss_pred cCCCCEEEEEecCCeEEEEeCC-CCCcccc---c-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETN-TWTSEPW---S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~-~~~~~~~---~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+|+|+.+++...++.|++||+. +++.... . .....+..++|+|+|++++++...+..+..+++........
T Consensus 149 spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~---- 224 (347)
T 3hfq_A 149 TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT---- 224 (347)
T ss_dssp CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE----
T ss_pred CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE----
Confidence 9999966666678899999998 5544221 1 23346788999999998888777777777776543111000
Q ss_pred Ccccccccccc----CCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 338 PVDLPDIVSLT----GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 338 ~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
....+.... ....+..++|+|||++|+++.... +.|.+|++.... ....+..+..+...+..++|+|
T Consensus 225 --~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-----~~v~v~~~~~~g--~~~~~~~~~~~~~~~~~~~~sp 295 (347)
T 3hfq_A 225 --QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-----NTLAVFAVTADG--HLTLIQQISTEGDFPRDFDLDP 295 (347)
T ss_dssp --EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-----TEEEEEEECGGG--CEEEEEEEECSSSCCCEEEECT
T ss_pred --EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-----CEEEEEEECCCC--cEEEeEEEecCCCCcCeEEECC
Confidence 000011111 112578899999999886655431 899999997321 1233445666677789999999
Q ss_pred cCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 414 HDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 414 dg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
||++ ++..+..++.|.+|.+..
T Consensus 296 dg~~----l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 296 TEAF----VVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TSSE----EEEEETTTTEEEEEEECT
T ss_pred CCCE----EEEEEcCCCcEEEEEEeC
Confidence 9986 344445568888886643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-24 Score=205.85 Aligned_cols=278 Identities=15% Similarity=0.110 Sum_probs=200.2
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc--CCCCCccccc
Q 013338 106 SWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP--SYPGNAASVR 183 (445)
Q Consensus 106 ~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~--~~~~~~~~~~ 183 (445)
+|+|++.++++++.+++|.+||.. +++.+..+..++. +..++|+|||+++++++.++.|.+||+ .+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~--t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~------- 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD--SKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP------- 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT--TCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC-------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC--CceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC-------
Confidence 488999999999999999999985 4666666654444 899999999999999999999999999 411
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECC----CCCeEEEEEecCCeEEEEEccCCCceeeecC------
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDVAQGLGTPIRRG------ 253 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~------ 253 (445)
.++..+..+ ..+..++|+| ||++|++++..+++|.+||..+++.......
T Consensus 213 ------------------~~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 213 ------------------TKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp ------------------EEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred ------------------cEEEEEecC--CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 234444432 5789999999 9999999986447999999998877544321
Q ss_pred ------CCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 254 ------FGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 254 ------~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
...+..+.++|+++. +++...++.|.+||+.+.+... ...+...+..+.|+|+|++++++...+..+..|+
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 237889999998765 4566778999999998866522 2345667889999999999988876666677666
Q ss_pred eccCCCCccccccCccccccccccC----CC-ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEccCCC--eeeeeee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTG----SQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDARRTP--LISLSLI 396 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~~~~~--~~~~~~~ 396 (445)
.. +.+.+..+.. |. ....+ ++|+ |+.++++..+ |++|.|||+.+.. ......+
T Consensus 353 ~~-------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 353 SK-------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp TT-------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEE
T ss_pred CC-------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEE
Confidence 53 2333333332 32 12222 4687 5555555422 1899999998721 1113345
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEe-------cCeeeEeeeee
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW-------SSGFCCTYPLI 438 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~-------~~G~v~~~~~~ 438 (445)
+.+.+|...+..++|+|||++ |.++. .++.|.+|++.
T Consensus 414 ~~l~~~g~~~~~v~~~pdg~~-----l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 414 AELQGQGGGSLFIKTHPKSSH-----LYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEECSCSCCCCEECCTTCCE-----EEECCTTCSSHHHHTCEEEEETT
T ss_pred EEEEcCCCCceEEEcCCCCCc-----EEEecCCCCCcccCceEEEEECC
Confidence 688889888999999999986 55554 15577777764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=219.40 Aligned_cols=288 Identities=10% Similarity=0.065 Sum_probs=190.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC---CeeEEEECcCCCcEEEEecC---------CcEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCK---------GGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~l~~spd~~~l~~~~~d---------g~i~ 169 (445)
+.+++|+|||+++++ +.|+.|++|++.. ++....+ ..|.. .|.+++|||||+++++++.+ +.+.
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~--g~~~~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVET--NTSTVLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGG--CCCEEEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCC--CcEEEEe-ccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 568899999998876 7899999999964 4444444 34443 49999999999888888764 6788
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
+||+..+.. ..+.. ...+ ...+..++|||||+.|++++. +.|++||+.+++...
T Consensus 95 ~~d~~~~~~-~~l~~----------------------~~~~-~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~ 148 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDP----------------------PEVS-NAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIR 148 (723)
T ss_dssp EEESSSCCC-EECCC----------------------TTCC-SCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEE
T ss_pred EEECCCCce-EeccC----------------------Cccc-cccccccEECCCCCEEEEEEC--CeEEEEECCCCceEE
Confidence 999984332 11111 1222 245889999999999999875 489999999887766
Q ss_pred eecC-CCC------------------eeEEEEcCCCCEEEEEecCC----------------------------------
Q 013338 250 IRRG-FGG------------------LSILKWSPTGDYFFAAKFDG---------------------------------- 276 (445)
Q Consensus 250 ~~~~-~~~------------------v~~~~~sp~g~~l~~~~~dg---------------------------------- 276 (445)
+... ... +.+++|+|||++|++++.++
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 5543 232 37899999999999887553
Q ss_pred eEEEEeCCCCCc-ccccCC------CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 277 TFYLWETNTWTS-EPWSST------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 277 ~v~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
.|++||+.+++. ..+..+ ...+.+++|+|||+++++..........+.+|+.. +++....+..
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~----------~g~~~~~~~~ 298 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----------TGVCTKKHED 298 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----------TCCEEEEEEE
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC----------CCcceEEEEe
Confidence 799999998875 444433 56788999999999887665544444556665532 2222222222
Q ss_pred -CC-cc----ceEEeCCCCCEEEEE-EcCCC-cccceEEEEEE-ccCCC---eeeeeeeeeeeCCCCCCCc-eeEeecCC
Q 013338 350 -SQ-GI----EKIAWDASGERLAVS-YKGGD-DIYKGLIAIYD-ARRTP---LISLSLIGFIRGPGDNPKP-VAFSFHDK 416 (445)
Q Consensus 350 -~~-~v----~~~~~sp~g~~l~~~-s~d~~-d~~d~~i~vwd-~~~~~---~~~~~~~~~~~~~~~~v~~-v~~spdg~ 416 (445)
+. .+ ..++|+|||+.|+.. +.... ......|++|| ..+++ .. .+..+...+.. ++|||||+
T Consensus 299 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~l~~~~~~~~~~~~~spdg~ 372 (723)
T 1xfd_A 299 ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ------SITSGDWDVTKILAYDEKGN 372 (723)
T ss_dssp ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC------BSCCSSSCEEEEEEEETTTT
T ss_pred ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee------EeecCCeEEEeeeEEcCCCC
Confidence 22 23 388999999988875 32211 00002677788 44443 22 23322233333 69999998
Q ss_pred CCCCCeEEEEecC--eeeEeeeeee
Q 013338 417 FKQGPLLSVCWSS--GFCCTYPLIF 439 (445)
Q Consensus 417 ~~~~~~l~~~~~~--G~v~~~~~~~ 439 (445)
+ ++..+..+ +.+.+|.+..
T Consensus 373 ~----l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 373 K----IYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp E----EEEEESSSCTTCCEEEEECS
T ss_pred E----EEEEEcCCCCcceEEEEEeC
Confidence 5 33344443 6677776653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-24 Score=208.65 Aligned_cols=255 Identities=13% Similarity=0.085 Sum_probs=180.1
Q ss_pred CCeeEEEEccCCCEEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~ 175 (445)
.+|++++|+|||++||+++. ||+++||+++ +++ ...++..+...+.+++|+|| +.++++.. +...++|.++.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~--~g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD--GGE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEE--TTE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEc--CCC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 46999999999999999886 9999999984 233 34444434468999999999 55554543 35667777653
Q ss_pred --CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 176 --PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
.+....+ ... ..+...+|+|+|+.++..+...+.+.+||+.+++...+..+
T Consensus 98 ~~~g~~~~l-------------------------~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 98 SRPGEEQRL-------------------------EAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp TSTTCCEEC-------------------------TTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred cCCCccccc-------------------------cCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 3222211 111 23446688888875444332224667999999887776655
Q ss_pred CCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 254 FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
.. .+++|+|||++|++++.+ +.|++||+.+++...+..+...+..++|+|||++|+++ +.++ ...+.+|+..
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~-~~~~-~~~i~~~d~~ 226 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGL-ETAR-EARLVTVDPR 226 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEE-ECSS-CEEEEEECTT
T ss_pred CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEc-cCCC-eeEEEEEcCC
Confidence 44 899999999999988777 78999999999988888888889999999999999943 3333 1234444432
Q ss_pred CCccccccCccccccccccCCC-ccceEE--------eCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 330 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIA--------WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--------~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
+.+.. .+.++. .+..++ |+|||+++++++.+ +.+++|++ ++...
T Consensus 227 ----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~--g~~~~-------- 279 (582)
T 3o4h_A 227 ----------DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE------GRSAVFID--GERVE-------- 279 (582)
T ss_dssp ----------TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET------TEEEEEET--TEEEC--------
T ss_pred ----------CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC------CcEEEEEE--CCeec--------
Confidence 22222 445555 566677 99999888888877 89999999 54331
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
.+...+.+++|+ ||++
T Consensus 280 ~~~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 280 APQGNHGRVVLW-RGKL 295 (582)
T ss_dssp CCSSEEEEEEEE-TTEE
T ss_pred cCCCceEEEEec-CCEE
Confidence 233567789999 8764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=186.64 Aligned_cols=272 Identities=8% Similarity=-0.002 Sum_probs=192.8
Q ss_pred CCeeEEEEccCCCEEEEEEC-------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW 171 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw 171 (445)
..+..++|+|+|+++++++. ++.|.+||.. +++....+. ....+..++|+|+++.++++.. ++.|.+|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~--~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV--TLEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT--TCCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC--CCeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45789999999999888774 5689999885 465555553 3445788999999887777665 5999999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe-cCCeEEEEEccCCCceee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~g~v~vwd~~~~~~~~~ 250 (445)
|.........+..... ..........+.+++|+|+++++++++. +++.|.+||+.+++....
T Consensus 117 d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~ 179 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDR-----------------KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA 179 (353)
T ss_dssp ETTTCCEEEEEESCCC-----------------CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE
T ss_pred eCCCCeeEEEEecCCC-----------------ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE
Confidence 9874432222111100 0000000113688999999998888773 236899999998877665
Q ss_pred ec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 251 RR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 251 ~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.. +...+.+++|+|+|++|++++.++.|.+||+.+++... +. .+...+..++|+|++++++++...+..+..++
T Consensus 180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 55 55668999999999999999999999999999987632 22 24556788999999999988876666676666
Q ss_pred eccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
.. +.+.+..+.... ...++|+|+|++++++.... +.|.+||+.+++.+. .+.. ..
T Consensus 260 ~~-------------~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~-----~~~~-~~ 314 (353)
T 3vgz_A 260 TR-------------NGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVK-----TFDT-PT 314 (353)
T ss_dssp TT-------------TCCEEEEEECSS-CCCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEE-----EEEC-CS
T ss_pred CC-------------CCcEEEEEEcCC-CceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEE-----EEec-CC
Confidence 53 222233333222 36799999999887776431 899999999877653 2332 33
Q ss_pred CCCceeEeecCCC
Q 013338 405 NPKPVAFSFHDKF 417 (445)
Q Consensus 405 ~v~~v~~spdg~~ 417 (445)
.+.+++|+|||++
T Consensus 315 ~~~~~~~s~dg~~ 327 (353)
T 3vgz_A 315 HPNSLALSADGKT 327 (353)
T ss_dssp EEEEEEECTTSCE
T ss_pred CCCeEEEcCCCCE
Confidence 5689999999985
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-23 Score=206.13 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=184.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC----
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY---- 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~---- 175 (445)
..|.+++|||| +.++++ .++.+++||+.. ++... + ..+...+.+++|||||+.+++ +.++.|++|++..
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~--~~~~~-l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA--RKVTY-L-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTT--TEEEE-E-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCC--CceEE-c-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCccccc
Confidence 56999999999 666655 469999999853 44333 3 246677999999999877777 5789999999985
Q ss_pred -CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---------------------
Q 013338 176 -PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--------------------- 233 (445)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------------- 233 (445)
........... .. +..+. ...+.+ ...+.++.|||||++|++++.|
T Consensus 155 ~g~~~~~~~~~~-~~---~~~g~-------~~~~ee-~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~ 222 (706)
T 2z3z_A 155 MSRAIAVTIDGT-ET---LVYGQ-------AVHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKP 222 (706)
T ss_dssp CCCCEESCSCCB-TT---EEESS-------CCGGGC-TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEE
T ss_pred CCCcEEeccCCC-CC---eEccc-------chhhhh-cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEE
Confidence 32221111110 00 00000 001112 1346899999999999998732
Q ss_pred -----------CCeEEEEEccCCCceeee---cCCCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCC-Cccccc-
Q 013338 234 -----------SSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW-TSEPWS- 292 (445)
Q Consensus 234 -----------~g~v~vwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~-~~~~~~- 292 (445)
.+.|++||+.+++...+. .+...+.+++|+|||++|++++.++ .|++||+.++ +...+.
T Consensus 223 ~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 223 LYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp ECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred eeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence 147999999988765544 3456789999999999999887775 8999999998 443332
Q ss_pred -CCCC---CeeEEEECC--CCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccce-EEeCCCCCE
Q 013338 293 -STSG---FVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGER 364 (445)
Q Consensus 293 -~~~~---~v~~~~~sp--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~sp~g~~ 364 (445)
.+.. .+.+++|+| +|++++++ ..++....+.+.. +...+..+..+. .+.. ++|+|+|+.
T Consensus 303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~------------~~~~~~~l~~~~~~v~~~~~~spdg~~ 369 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDT------------TGRLIRQVTKGEWEVTNFAGFDPKGTR 369 (706)
T ss_dssp EECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEET------------TSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred ccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEEC------------CCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence 2222 346789999 99987755 3334334443321 233445555555 5766 799999999
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
|++++.+... ....|+.||+.+++.. .+ .|...+.+++|||||++
T Consensus 370 l~~~~~~~~~-~~~~l~~~d~~~~~~~------~l-~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 370 LYFESTEASP-LERHFYCIDIKGGKTK------DL-TPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEEESSSCT-TCBEEEEEETTCCCCE------ES-CCSSSEEEEEECTTSSE
T ss_pred EEEEecCCCC-ceEEEEEEEcCCCCce------ec-cCCCceEEEEECCCCCE
Confidence 8887765210 0037778888776533 22 25667889999999986
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-23 Score=207.58 Aligned_cols=289 Identities=14% Similarity=0.148 Sum_probs=180.6
Q ss_pred CeeEEEEccCCCEEEEEECC---------CeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d---------~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.|.+++|||||++||+++.+ +.+.+||++. ++. ..+. .+|...+..++|||||+.+++++. +.|+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~ 137 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY 137 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC--Cce-EeccCCccccccccccEECCCCCEEEEEEC-CeEE
Confidence 48899999999999999864 7888999864 433 2222 234555899999999888877765 7999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---------------
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------------- 234 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------- 234 (445)
+|++..+........+....+. .....|. .+......+.+++|||||+.|++++.++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~----~g~~~~v----~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 138 YCAHVGKQAIRVVSTGKEGVIY----NGLSDWL----YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EESSSSSCCEEEECCCBTTTEE----EEECCHH----HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEECCCCceEEEecCCCCCceE----Cccccee----EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 9998843322111110000000 0000000 0000012447899999999999988652
Q ss_pred ------------------CeEEEEEccCCCc-eeeecC------CCCeeEEEEcCCCCEEEEEec----CCeEEEEeCCC
Q 013338 235 ------------------SSFTIWDVAQGLG-TPIRRG------FGGLSILKWSPTGDYFFAAKF----DGTFYLWETNT 285 (445)
Q Consensus 235 ------------------g~v~vwd~~~~~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~----dg~v~iwd~~~ 285 (445)
..|++||+.+++. ..+..+ ...+..++|+|||++|++... +..|++||+.+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 1799999998875 444433 467889999999998876653 35799999999
Q ss_pred CCccccc--CCCCCe----eEEEECCCCCeEEEE-EcCCc---eEEEEEeccCCCCccccccCccccc---cccccC-CC
Q 013338 286 WTSEPWS--STSGFV----TGATWDPEGRMILLA-FAGSL---TLGSIHFASKPPSLDAHLLPVDLPD---IVSLTG-SQ 351 (445)
Q Consensus 286 ~~~~~~~--~~~~~v----~~~~~sp~~~~l~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~ 351 (445)
++...+. .+...+ ..++|+|||+.|++. ...++ ....+.+++.. .... ...+.. +.
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~----------~~~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ----------PNSSNDNIQSITSGDW 359 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS----------CCSSSCCCCBSCCSSS
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEecc----------CCCCccceeEeecCCe
Confidence 8874432 233333 378999999988865 44433 01223333210 1111 333433 23
Q ss_pred ccce-EEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC---CCCCCCceeEeecCCC
Q 013338 352 GIEK-IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 352 ~v~~-~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~v~~v~~spdg~~ 417 (445)
.+.. ++|+|||++|++.+.+... +.++||++....... ...+.. |...+..++|||||++
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLP---RRRQLYSANTVGNFN---RQCLSCDLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCT---TCCEEEEECSSTTCC---CBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCC---cceEEEEEeCCCCCC---cceecccccCCCCeEEEEECCCCCE
Confidence 4444 6999999999887765211 568899986432100 112332 5667889999999985
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-23 Score=186.64 Aligned_cols=272 Identities=10% Similarity=0.036 Sum_probs=183.1
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCC-CeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++|++++.++.|.+||.. +++....+..++.. .+..++|+|+++.+++++. ++.|.+||+........+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~---- 75 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS---- 75 (337)
T ss_dssp EEEEEEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC----
T ss_pred cEEEEcCCCCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC----
Confidence 478899999999999985 46655555433322 4889999999877776665 589999998743322111110
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE------------ecCCeEEEEEccCCCceeeecCCCCe
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS------------YESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
....+...+..++|+|+|++|++++ .+ +.|.+||+.+++..........+
T Consensus 76 -----------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~ 137 (337)
T 1pby_B 76 -----------------TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP-TRVALYDAETLSRRKAFEAPRQI 137 (337)
T ss_dssp -----------------BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC-CEEEEEETTTTEEEEEEECCSSC
T ss_pred -----------------CcccccccccceEECCCCCEEEEEecccccccccccccC-ceEEEEECCCCcEEEEEeCCCCc
Confidence 0000012577899999999998886 35 69999999988776555556678
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEE----------------
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG---------------- 321 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~---------------- 321 (445)
.+++|+|+|++|+++ ++.|++||+.+++.............+.|+|+++.++++........
T Consensus 138 ~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 138 TMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred ceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 899999999988887 68899999998876422211111123478999998776544333220
Q ss_pred ----EEEeccCCCCccccccCccccc-cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 322 ----SIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 322 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
.+.+++.. +.+. ...+..+. .+.+++|+|||++|+++ + +.|++||+.+++...
T Consensus 216 ~~~~~v~~~d~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~------~~v~~~d~~~~~~~~--- 274 (337)
T 1pby_B 216 AYRTGLLTMDLE----------TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y------NVLESFDLEKNASIK--- 274 (337)
T ss_dssp GEEEEEEEEETT----------TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E------SEEEEEETTTTEEEE---
T ss_pred ccccceEEEeCC----------CCCceEeecCCCCCceeeEEECCCCCEEEEe--C------CeEEEEECCCCcCcc---
Confidence 12222221 1111 11122333 57789999999999987 4 789999999876552
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.. ...+.+++|+|||++ |.++..+|.|.+|++.
T Consensus 275 --~~~~-~~~~~~~~~s~dg~~-----l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 275 --RVPL-PHSYYSVNVSTDGST-----VWLGGALGDLAAYDAE 309 (337)
T ss_dssp --EEEC-SSCCCEEEECTTSCE-----EEEESBSSEEEEEETT
T ss_pred --eecC-CCceeeEEECCCCCE-----EEEEcCCCcEEEEECc
Confidence 2332 346789999999885 5556668888888763
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=179.58 Aligned_cols=235 Identities=13% Similarity=0.188 Sum_probs=165.2
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCC-CCCeeEEEECcCCCcEEEEec--CCcEEEEccCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSY 175 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd~~~l~~~~~--dg~i~vw~~~~ 175 (445)
...|.+++|+|+|++|++++ ++.|.+|+++. .++..... ..+ ...+.+++|+|+++.+++++. ++...||.++.
T Consensus 41 ~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAG-DPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE-TTEEEEEESSS-CCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred CcceEeeEECCCCCEEEEEc-CCeEEEEeCCC-CCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 34689999999999999876 78999999853 03333333 334 478899999999888888883 35667776652
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE-EEEecCCeEEEEEcc--CCCceeeec
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVA--QGLGTPIRR 252 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~g~v~vwd~~--~~~~~~~~~ 252 (445)
..... ..+..+ ..+..++|+|++++|+ +++.+ +.+++|++. ++....+..
T Consensus 118 ~~~~~------------------------~~~~~~--~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 118 TGGTP------------------------RLMTKN--LPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp TCCCC------------------------EECCSS--SSEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCCEEECCC
T ss_pred CCCce------------------------EEeecC--CCccceEECCCCCEEEEEECCC-CceEEEEEECCCCcceEccc
Confidence 22111 112222 3588899999999888 55666 789999864 455566667
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCC--CCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc-------eEEE
Q 013338 253 GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL-------TLGS 322 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~-------~~~~ 322 (445)
+...+.+++|+|+|++|++++ .++.+++|+++ .+....+..+...+..++|+|++++|+++..... ....
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 778899999999999888766 48888888775 4444666677778899999999999987754321 2244
Q ss_pred EEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
+.+|+.... ....+..+.+|. .+..++|+|+|++|++++.+
T Consensus 251 l~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 251 VQLMDMDGG--------NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEETTSC--------SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EEEEecCCC--------CceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 444443210 111233334555 79999999999999998876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-22 Score=179.92 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=165.1
Q ss_pred CeeEEEEccCCCEEEEEEC-CCeEEEEEccCCCCcc-eeEEecCCCCCeeEEEECcCCCcEEEEecC-C--cEEEEccCC
Q 013338 101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSEGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY 175 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~-d~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~i~vw~~~~ 175 (445)
.+ +++|+|+|++|++++. ++.|.+||+.. ++. ...+ ..+..+..+++|+|+++.+++...+ + .|.+||+..
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~ 117 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQL--EPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK 117 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSS--SSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCC--CceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence 45 8999999997776665 88999999854 444 3333 3355555559999998877743334 2 899999873
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe-EEEEEccCCCce-----e
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-FTIWDVAQGLGT-----P 249 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~-v~vwd~~~~~~~-----~ 249 (445)
.. ....+..+ ....+++|+|+|++|++++.+.+. |.+|++...... .
T Consensus 118 ~~-------------------------~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 118 NK-------------------------FISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp TE-------------------------EEEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred CC-------------------------eEEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 22 22233332 457899999999988777665457 999998754332 2
Q ss_pred eecCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
.......+..++|+|+|++++++ ..++.|++||+.+++. .........+..++|+|+|++++++...+..+..+++
T Consensus 171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 22345678999999999976554 4688999999998876 4333455677899999999988877654444444443
Q ss_pred ccCCCCccccccCccccccccccC----CC----ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSLTG----SQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~----~~----~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.... ...+..+.. +. ....++|+|||++|++++.++ +.|.+||+....
T Consensus 251 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~ 306 (331)
T 3u4y_A 251 LSGT-----------LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-----RELKVFTISGKV 306 (331)
T ss_dssp TTTE-----------EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-----TEEEEEETTSCE
T ss_pred CCCc-----------eeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-----CcEEEEEecCCc
Confidence 2110 000111111 11 236689999999998877653 799999998643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=206.31 Aligned_cols=280 Identities=11% Similarity=0.091 Sum_probs=182.4
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.+++|||||++|++++. +.|.+|++..........+ ..|...+..++|||||+.+++++ ++.|++|++..... .
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~ 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-M 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-E
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-E
Confidence 4789999999999999886 9999999864210022233 35778899999999987777665 56999999874221 1
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-------------------------
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------------------- 235 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g------------------------- 235 (445)
.+....... +..+ ...|. .... ...+..++|||||++|++++.+.+
T Consensus 186 ~~~~~~~~~---~~~g-~~~~v----~~~~-~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 186 QLTADGSTT---IGNG-IAEFV----ADEE-MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp ECCCCCCSS---EEES-CCCHH----HHHH-SCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred EeccCCccc---eecc-cccee----eeec-cccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 111100000 0000 00000 0000 123578999999999999987732
Q ss_pred -------eEEEEEccC-CCceeee---cCCCCeeEEEEcCCCCEEEEEec-----CCeEEEEeCCCCCccccc-CCC-C-
Q 013338 236 -------SFTIWDVAQ-GLGTPIR---RGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STS-G- 296 (445)
Q Consensus 236 -------~v~vwd~~~-~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~-----dg~v~iwd~~~~~~~~~~-~~~-~- 296 (445)
.|++||+.+ ++...+. .+...+..++| |||++|++++. +..|++||+.+++...+. .+. .
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 788999988 8765554 35677899999 99999987754 568999999998874433 222 1
Q ss_pred --CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE-EeCCCCCEEEEEEcCC
Q 013338 297 --FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI-AWDASGERLAVSYKGG 372 (445)
Q Consensus 297 --~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~sp~g~~l~~~s~d~ 372 (445)
.+..++|+|||++++++ ..++....+.+. . ... ...+..+. .+..+ .|+|+|+.|++.+.+.
T Consensus 336 ~~~~~~~~~spdg~~~~~~-~~~g~~~l~~~~-~-----------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~ 401 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSS-ERTGFQHLYRID-S-----------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE 401 (741)
T ss_dssp CCCCSCCEECTTSCEEEEE-CTTSSCEEEEEC-S-----------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred CCcCCceEECCCCeEEEEe-cCCCccEEEEEc-C-----------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence 45689999999966654 444433333321 1 223 45555555 67777 5999999887665542
Q ss_pred CcccceEEEEEEccC-CCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 373 DDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
.. ..++||++.. +... ..+.. ...+..++|||||++
T Consensus 402 ~~---~~~~l~~~~~~g~~~-----~~l~~-~~~~~~~~~spdg~~ 438 (741)
T 2ecf_A 402 SA---RESQIYAVPLQGGQP-----QRLSK-APGMHSASFARNASV 438 (741)
T ss_dssp CT---TCBEEEEEETTCCCC-----EECCC-SCSEEEEEECTTSSE
T ss_pred CC---ceEEEEEEEcCCCCe-----eeccc-CCCceEEEECCCCCE
Confidence 11 2789999864 3322 13333 456789999999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-21 Score=176.49 Aligned_cols=285 Identities=15% Similarity=0.189 Sum_probs=187.3
Q ss_pred CCCEEEEEE----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCCCCccc
Q 013338 110 HKHIVAFIS----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAAS 181 (445)
Q Consensus 110 ~g~~la~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~~~~~~ 181 (445)
...+++.|+ .++.|.+|.++..+++....... +...+..++|+|||+.|++++.+ +.|.+|+++....
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g--- 87 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG--- 87 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---
Confidence 344556664 45789999998766765544433 67778899999998888888775 7999999873311
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-e---eecC----
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-P---IRRG---- 253 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~---~~~~---- 253 (445)
....+.....+. .....+++ ++++|++++..++.|.+|++...... . ...+
T Consensus 88 ------------------~~~~~~~~~~~~-~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 88 ------------------TLHLLNTQKTMG-ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp ------------------EEEEEEEEECSS-SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred ------------------cEEEeeEeccCC-CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 112222333232 46677787 88888888865579999999754321 1 1111
Q ss_pred -------CCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCC-------c-------ccccCCCCCeeEEEECCCCCeEE
Q 013338 254 -------FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT-------S-------EPWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 254 -------~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~-------~-------~~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
...+.+++|+|+|++|++++ .++.|++|++.... . .........+..++|+|+|++++
T Consensus 147 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 23457899999999776655 47899999887543 1 11223455678999999999998
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CC
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RT 388 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~ 388 (445)
++...+..+..|++.... +. ....+.....+. ....++|+|||++|+++..+++ +.|.+|++. ++
T Consensus 227 v~~~~~~~v~v~~~~~g~------~~--~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~----~~i~v~~~~~~~g 294 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGM------LD--EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA----DGVAIFKVDETNG 294 (361)
T ss_dssp EEETTTCEEEEEEEETTE------EE--EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS----CEEEEEEECTTTC
T ss_pred EEcCCCCeEEEEEecCCc------eE--EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC----CEEEEEEEcCCCC
Confidence 887666777777664210 00 001111222222 5679999999999987765411 789999996 45
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++. .+..+.. ...+.+++|+|||++ +++.+..++.|.+|.+..
T Consensus 295 ~~~---~~~~~~~-g~~~~~~~~spdg~~----l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 295 TLT---KVGYQLT-GIHPRNFIITPNGKY----LLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CEE---EEEEEEC-SSCCCEEEECTTSCE----EEEEETTTTEEEEEEECT
T ss_pred cEE---EeeEecC-CCCCceEEECCCCCE----EEEEECCCCCEEEEEEEC
Confidence 433 2333444 567889999999986 333344678888876653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=189.89 Aligned_cols=288 Identities=11% Similarity=0.025 Sum_probs=187.8
Q ss_pred EEEEccCCCEEEEEEC-CCe--EEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 104 GVSWHQHKHIVAFISG-STQ--VIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
..+|||||++||+++. ++. |.+|++ .+++. ..++.++...+..++|+|||+.|++++.++.+++||+.......
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~-~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDL--NTQVA-TQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV 116 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEET--TTCEE-EECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeC--CCCce-EEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 3789999999999887 675 555555 34544 33444555556678999999999999888999999998432211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEE--EECCCCCeEEEEE----------------------ecCCe
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDGRYLASAS----------------------YESSS 236 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~~~~----------------------~d~g~ 236 (445)
.+..+. ..+... .++|+++.++... .+ +.
T Consensus 117 -------------------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 169 (388)
T 3pe7_A 117 -------------------------VYQVPA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC-CR 169 (388)
T ss_dssp -------------------------EEECCT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC-EE
T ss_pred -------------------------eeechh-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc-ce
Confidence 111221 233333 3489998887532 23 47
Q ss_pred EEEEEccCCCceeeecCCCCeeEEEEcC-CCCEEEEEecC------CeEEEEeCCCCCcccccCCC--CCeeEEEECCCC
Q 013338 237 FTIWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSSTS--GFVTGATWDPEG 307 (445)
Q Consensus 237 v~vwd~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~ 307 (445)
|.+||+.+++...+..+...+..++|+| +|+.|+.+..+ ..|+++|..+++...+..+. ..+..+.|+|||
T Consensus 170 l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTS
T ss_pred EEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCC
Confidence 9999999998888877778899999999 99999877653 37899998887776666554 357789999999
Q ss_pred CeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCCC----ccceEEeCCCCCEEEEEEcC------CCccc
Q 013338 308 RMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKG------GDDIY 376 (445)
Q Consensus 308 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~g~~l~~~s~d------~~d~~ 376 (445)
+.|++.... ......+.+++..... ...+..+.++. ....++|+|||+.|+....+ ..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~--------~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~--- 318 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLE--------NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN--- 318 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCC--------EEEEEEECCEEEEEECTTSSEEEEEECCC------------CC---
T ss_pred CEEEEEecCCCCCcceEEEEecCCCc--------eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC---
Confidence 988755432 2222234444432110 01122222211 13445899999998875432 11
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCC-----------CCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~-----------~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
+..|++||+.+++.. .+..+.. .+.+++|||||+. ++.....+|...+|.+...++
T Consensus 319 ~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~----l~~~s~~~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ----ILFTSDVHGKPALYLATLPES 385 (388)
T ss_dssp CCEEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCGG
T ss_pred CCEEEEEeccCCceE------EeccccCcccccccccccCCCCccCCCCCCE----EEEEecCCCceeEEEEECChh
Confidence 178999999987654 2333333 5788999999985 344445678888888776654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-21 Score=176.24 Aligned_cols=282 Identities=14% Similarity=0.155 Sum_probs=181.1
Q ss_pred cCCeeEEEEccCCCEEEEEECC----CeEEEEEccCCCCcceeEEe-cCCCCCeeEEEECcCCCcEEEEec-CCcEEEEc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGS----TQVIVRDYEDSEGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA 172 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d----~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~ 172 (445)
...+..++|+|||++|++++.+ +.+.+|+++..+++...... ..+...+..+++ +++.++++.. ++.|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 3457789999999999998875 79999999865454333221 224556777888 7677777764 68999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-----
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----- 247 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~----- 247 (445)
+...+....+.... ...+ .+. ...+.+ ...+.+++|+|+|++|++++...+.|.+|++.....
T Consensus 127 ~~~~g~~~~~~~~~-~~~g---~~~-------~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~ 194 (361)
T 3scy_A 127 IGQDGALLPASDVI-EFKG---SGP-------DKERQT-MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKE 194 (361)
T ss_dssp BCTTSCBCSCSEEE-ECCC---CCS-------CTTTCS-SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCC
T ss_pred eCCCCcCcccceeE-EccC---CCC-------CccccC-CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccc
Confidence 97544332221100 0000 000 000111 245688999999998887776446999999875432
Q ss_pred ---------eeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccc------ccCCCCCeeEEEECCCCCeEE
Q 013338 248 ---------TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP------WSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 248 ---------~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~ 311 (445)
.........+..++|+|+|+++++++ .++.|.+||+.+++... ...+......++|+|||++|+
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~ 274 (361)
T 3scy_A 195 KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLY 274 (361)
T ss_dssp CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEE
T ss_pred ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEE
Confidence 11223456788999999999887777 68999999998775422 123334568999999999998
Q ss_pred EEEcC-CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc--cCC
Q 013338 312 LAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRT 388 (445)
Q Consensus 312 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~~ 388 (445)
++... +..+..|++..... ....+..+.....+..++|+|||++|++++.+. +.|.+|++ .++
T Consensus 275 v~~~~~~~~i~v~~~~~~~g---------~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g 340 (361)
T 3scy_A 275 ASNRLKADGVAIFKVDETNG---------TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATG 340 (361)
T ss_dssp EEECSSSCEEEEEEECTTTC---------CEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTC
T ss_pred EECCCCCCEEEEEEEcCCCC---------cEEEeeEecCCCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCC
Confidence 77665 56666666531110 111233333322688999999999999987542 78999655 466
Q ss_pred CeeeeeeeeeeeCCCCCCCceeEe
Q 013338 389 PLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 389 ~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
++..... . .+...+.++.|.
T Consensus 341 ~~~~~~~--~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 341 LLTDIKK--D--IKVDKPVCLKFV 360 (361)
T ss_dssp CEEECSC--C--EECSSEEEEEEE
T ss_pred cEeecce--e--eeCCCCeEEEEc
Confidence 6542110 1 123356677775
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-22 Score=207.91 Aligned_cols=220 Identities=11% Similarity=-0.010 Sum_probs=155.9
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
+|...+.++.|+++ ..++++..++.++||.+...+... ..+..+ ..+..++|+
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~------------------------~~l~~~--~~~~~~~~S 253 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL------------------------RKHTSF--TDYYPRHLN 253 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC------------------------EECCCC--CSSCEEEEE
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc------------------------eEecCC--CCcceeeEc
Confidence 45556666677666 333334445666777655322111 112223 246678999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeec-----------CCCCeeEEEEc-CCCCEEEEEecCCeEEEEeCCCCCcc
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRR-----------GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-----------~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
|||++|+++. + +.|++||+.......+.. +...+.+++|+ |+|++|++++ ++.|++|++.+++..
T Consensus 254 pDG~~la~~~-~-~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~ 330 (1045)
T 1k32_A 254 TDGRRILFSK-G-GSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL 330 (1045)
T ss_dssp ESSSCEEEEE-T-TEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred CCCCEEEEEe-C-CEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence 9999999874 6 699999995443332222 22368999999 9999999887 889999999988877
Q ss_pred cccCCCC-CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 290 PWSSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 290 ~~~~~~~-~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
.+..+.. .+..++|+ +|+.++++.. +..++ ++++. .......+.+|. .+..++|+|||++|++
T Consensus 331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~--~~~d~-----------~~~~~~~l~~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFL--GIYDY-----------RTGKAEKFEENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp ECSCCSCEEEEEECSS-SEEEEEEEET-TEEEE--EEEET-----------TTCCEEECCCCCCSEEEEEECTTSSEEEE
T ss_pred EccCCCcceEEeeeEc-CCCeEEEEEC-CCceE--EEEEC-----------CCCCceEecCCccceeeeEECCCCCEEEE
Confidence 7777777 89999999 9999997765 33333 23332 122233344555 7899999999999999
Q ss_pred EEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
++.+ +.|++||+.+++... .+.+|...+.+++|||||++
T Consensus 396 ~~~~------~~v~~~d~~tg~~~~-----~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 396 ANDR------FEIMTVDLETGKPTV-----IERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp EETT------SEEEEEETTTCCEEE-----EEECSSSCCCCEEECTTSCE
T ss_pred ECCC------CeEEEEECCCCceEE-----eccCCCCCccceEECCCCCe
Confidence 9877 899999999887652 34478888999999999986
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-21 Score=175.91 Aligned_cols=252 Identities=13% Similarity=0.116 Sum_probs=169.5
Q ss_pred CCeeEEEEccCCCEEEEEEC---CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCC
Q 013338 100 VDLQGVSWHQHKHIVAFISG---STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY 175 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~ 175 (445)
..+..++|+|||+ |++++. ++.|.+|+++..+.+.+... ..+...+..++|+|||+.+++++ .++.+.+|++..
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence 3467899999999 555543 68999999954222222222 23667789999999988888887 568999999974
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecc--------cCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-CCC
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--------QNGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGL 246 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~-~~~ 246 (445)
.+....+. .+.. .....+.+++|+|+|+ ++++...++.|.+|++. +++
T Consensus 118 ~g~~~~~~----------------------~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~ 174 (347)
T 3hfq_A 118 DGALTLTD----------------------TVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQ 174 (347)
T ss_dssp TSCEEEEE----------------------EEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSC
T ss_pred CCCeeecc----------------------eeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCc
Confidence 33322211 1111 0123588999999999 55554433699999998 454
Q ss_pred ceeee---c-CCCCeeEEEEcCCCCEEEE-EecCCeEEEEeCCC--CCcc---cccCC------CCCeeEEEECCCCCeE
Q 013338 247 GTPIR---R-GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNT--WTSE---PWSST------SGFVTGATWDPEGRMI 310 (445)
Q Consensus 247 ~~~~~---~-~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~--~~~~---~~~~~------~~~v~~~~~sp~~~~l 310 (445)
..... . ....+..++|+|+|++|++ ...++.|++|+++. ++.. .+... ...+..++|+|+|++|
T Consensus 175 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 175 LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 43221 1 2346889999999997665 45688999999874 4431 11111 1458889999999999
Q ss_pred EEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc--cC
Q 013338 311 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RR 387 (445)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~ 387 (445)
+++...+..+..|++.... ....+..+..+. .+..++|+|||++|++++.+. +.|.+|++ ++
T Consensus 255 ~v~~~~~~~v~v~~~~~~g----------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~~~d~~t 319 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTADG----------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-----DNATLYARDLTS 319 (347)
T ss_dssp EEEEETTTEEEEEEECGGG----------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-----TEEEEEEECTTT
T ss_pred EEEeCCCCEEEEEEECCCC----------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-----CcEEEEEEeCCC
Confidence 8776666667777653110 112334444444 689999999999999887653 78999954 56
Q ss_pred CCee
Q 013338 388 TPLI 391 (445)
Q Consensus 388 ~~~~ 391 (445)
+++.
T Consensus 320 g~l~ 323 (347)
T 3hfq_A 320 GKLS 323 (347)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 6655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=208.78 Aligned_cols=274 Identities=15% Similarity=0.101 Sum_probs=197.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.+++|+++ .++++++.++.+.||.++...+ ....+. .|. .+..++|+|||+.++++ .++.|.+|++. ....
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~-~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~-~~~l 277 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHT-SFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD-TEKI 277 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECC-CCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT-TCCE
T ss_pred CcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEec-CCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC-ceEe
Confidence 46889999998 6666777889999999874333 333332 343 46788999998777766 68999999984 2211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCeEEEEEecCCeEEEEEccCCCceeeecCCC-Ce
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~-~v 257 (445)
..+.... ... ......| ...+.+++|+ |||++|++++ + +.+.+|++..+....+..+.. .+
T Consensus 278 ~~l~~~~----------~~~----~~~~~~~-~~~v~~~~~S~pdG~~la~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~ 340 (1045)
T 1k32_A 278 EKIEIGD----------LES----PEDRIIS-IPSKFAEDFSPLDGDLIAFVS-R-GQAFIQDVSGTYVLKVPEPLRIRY 340 (1045)
T ss_dssp EECCCCC----------CCB----CCSEEEE-CGGGGEEEEEECGGGCEEEEE-T-TEEEEECTTSSBEEECSCCSCEEE
T ss_pred eeeccCc----------ccc----ccccccc-ccccceeeecCCCCCEEEEEE-c-CEEEEEcCCCCceEEccCCCcceE
Confidence 1111000 000 0001112 2478999999 9999999987 5 699999999887776666777 89
Q ss_pred eEEEEcCCCCEEEEEecCCeEE-EEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFY-LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
..++|+ +|+.|++++.++.++ +||+.+++...+..+...+..++|+|||++|+++.. +..+..|++.
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~---------- 408 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLE---------- 408 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETT----------
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECC----------
Confidence 999999 999999999888999 999998887666677788999999999999997754 3445555442
Q ss_pred cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC----cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 337 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~----d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
+.+......+|. .+.+++|||||++|++++.+++ ...++.|++||+.+++.. .+..|...+..++|
T Consensus 409 ---tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~------~l~~~~~~~~~~~~ 479 (1045)
T 1k32_A 409 ---TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF------AATTENSHDYAPAF 479 (1045)
T ss_dssp ---TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE------ECSCSSSBEEEEEE
T ss_pred ---CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE------EeeCCCcccCCceE
Confidence 223333343566 7899999999999998876420 001268999999987632 45567777888999
Q ss_pred eecCCC
Q 013338 412 SFHDKF 417 (445)
Q Consensus 412 spdg~~ 417 (445)
+|||++
T Consensus 480 spdG~~ 485 (1045)
T 1k32_A 480 DADSKN 485 (1045)
T ss_dssp CTTSCE
T ss_pred cCCCCE
Confidence 999985
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=201.59 Aligned_cols=280 Identities=14% Similarity=0.120 Sum_probs=181.9
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC---CeeEEEECcCCCcEEEEec---------CCcEEEE
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGC---------KGGICIW 171 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~l~~spd~~~l~~~~~---------dg~i~vw 171 (445)
+++|+|||++++ .+.|+.|++|++.. ++....+ ..+.. .+.+++|||||+.|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIET--GQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSS--CCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCC--CcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 679999997655 45799999999853 5443333 32322 4899999999988888776 6899999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~ 251 (445)
|+..+..... ..+ ...+..++|||||+.|+++. + +.|++||+.+++...+.
T Consensus 96 d~~~g~~~~~-----------------------~~l----~~~~~~~~~SPDG~~la~~~-~-~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 96 DLSNGEFVRG-----------------------NEL----PRPIQYLCWSPVGSKLAYVY-Q-NNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp ETTTTEECCS-----------------------SCC----CSSBCCEEECSSTTCEEEEE-T-TEEEEESSTTSCCEECC
T ss_pred ECCCCccccc-----------------------eec----CcccccceECCCCCEEEEEE-C-CeEEEEeCCCCCcEEEe
Confidence 9873321000 001 14578899999999999985 6 59999999988776544
Q ss_pred cC--CCCe-----------------eEEEEcCCCCEEEEEecCC----------------------------------eE
Q 013338 252 RG--FGGL-----------------SILKWSPTGDYFFAAKFDG----------------------------------TF 278 (445)
Q Consensus 252 ~~--~~~v-----------------~~~~~sp~g~~l~~~~~dg----------------------------------~v 278 (445)
.. ...+ .+++|+|||++|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 22 2212 4899999999999887652 78
Q ss_pred EEEeCCCCCcc---c------ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc----CCCCccccccCccccccc
Q 013338 279 YLWETNTWTSE---P------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS----KPPSLDAHLLPVDLPDIV 345 (445)
Q Consensus 279 ~iwd~~~~~~~---~------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 345 (445)
++||+.+++.. . +..+...+.+++|+||++++++..+.......+.+++ .. +++...
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~g~~~~ 296 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ----------TWDCPK 296 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS----------SEECCG
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC----------CCceEE
Confidence 99999987642 2 2356778899999999877666443322223333333 21 222222
Q ss_pred cc----cCCC-ccc-----eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 346 SL----TGSQ-GIE-----KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 346 ~~----~~~~-~v~-----~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
.+ .+|. .+. .++|+|||+.|+..+.+.+ + ...|++||+.+++.. .+..+...+..+.++ ++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-g-~~~l~~~~~~~~~~~------~lt~~~~~v~~~~~~-d~ 367 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD-G-YKHIHYIKDTVENAI------QITSGKWEAINIFRV-TQ 367 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT-S-CEEEEEESSCSTTCE------ECSCSSSCEEEEEEE-CS
T ss_pred EEecccccCCceEccccCCccEECCCCCeEEEEEEccC-C-ceEEEEEECCCCceE------ecccCceEEEEEEEE-eC
Confidence 33 2444 565 8999999997766332211 0 157888998876633 334444456677777 66
Q ss_pred CCCCCCeEEEEec----CeeeEeeeeee
Q 013338 416 KFKQGPLLSVCWS----SGFCCTYPLIF 439 (445)
Q Consensus 416 ~~~~~~~l~~~~~----~G~v~~~~~~~ 439 (445)
+. ++..+.. .+.+.+|.+..
T Consensus 368 ~~----i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 368 DS----LFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SE----EEEEESCGGGCTTCBEEEEEEC
T ss_pred CE----EEEEEecCCCCCceEEEEEEeC
Confidence 53 3333332 35555555543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-21 Score=196.34 Aligned_cols=259 Identities=14% Similarity=0.153 Sum_probs=173.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc--eeEEecC---------------CCCCeeEEEECcCCCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD--ACILTSD---------------SQRDVKVLEWRPNGGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~---------------~~~~v~~l~~spd~~~l~~~~ 163 (445)
.+..+.|. |..+++++.++ | +||+.+ ++. ...+... +...|.+++|+|| +.++++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~t--g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~- 98 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKAN--GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF- 98 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCC--CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence 46678899 66777777787 8 999864 444 2222111 1156999999999 676666
Q ss_pred cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.++.+++||+.... + ..+..+ ...+.+++|||||++|+++ .+ +.|++||+.
T Consensus 99 ~~~~i~~~d~~~~~-------------------------~-~~l~~~-~~~~~~~~~SpdG~~la~~-~~-~~i~v~~~~ 149 (706)
T 2z3z_A 99 TQGGLVGFDMLARK-------------------------V-TYLFDT-NEETASLDFSPVGDRVAYV-RN-HNLYIARGG 149 (706)
T ss_dssp ETTEEEEEETTTTE-------------------------E-EEEECC-TTCCTTCEECTTSSEEEEE-ET-TEEEEEECB
T ss_pred ECCEEEEEECCCCc-------------------------e-EEccCC-cccccCCcCCCCCCEEEEE-EC-CeEEEEecC
Confidence 56999999987321 1 112223 2578899999999999995 56 699999999
Q ss_pred C-----CCceeeecCCCC---------------eeEEEEcCCCCEEEEEe------------------------------
Q 013338 244 Q-----GLGTPIRRGFGG---------------LSILKWSPTGDYFFAAK------------------------------ 273 (445)
Q Consensus 244 ~-----~~~~~~~~~~~~---------------v~~~~~sp~g~~l~~~~------------------------------ 273 (445)
+ ++...+...... +.+++|+|||++|++++
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 8 776654443222 58999999999999887
Q ss_pred ---cCCeEEEEeCCCCCccccc---CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCcccccccc
Q 013338 274 ---FDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 274 ---~dg~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
.+..|++||+.+++...+. .+...+.+++|+|||++|+++..+ ......+.+|+.. ++.....
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----------~g~~~~~ 299 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE----------TGRFVRT 299 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT----------TCCEEEE
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC----------CCceeeE
Confidence 3468999999998764443 456678999999999988876432 2223445555432 1111111
Q ss_pred cc--CCC----ccceEEeCC--CCCEEEEEEcCCCcccceEEEEEEcc-CCCeeeeeeeeeeeCCCCCCCc-eeEeecCC
Q 013338 347 LT--GSQ----GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKP-VAFSFHDK 416 (445)
Q Consensus 347 ~~--~~~----~v~~~~~sp--~g~~l~~~s~d~~d~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~v~~-v~~spdg~ 416 (445)
+. .+. .+..++|+| ||++|++++.+ +.++||.++ ++... ..+..+...+.. ++|+|||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~------g~~~l~~~~~~~~~~-----~~l~~~~~~v~~~~~~spdg~ 368 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD------GWNHLYLYDTTGRLI-----RQVTKGEWEVTNFAGFDPKGT 368 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTT------SSCEEEEEETTSCEE-----EECCCSSSCEEEEEEECTTSS
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccC------CccEEEEEECCCCEE-----EecCCCCeEEEeeeEEcCCCC
Confidence 11 111 247889999 99998888766 677888776 33332 345556666766 79999987
Q ss_pred C
Q 013338 417 F 417 (445)
Q Consensus 417 ~ 417 (445)
.
T Consensus 369 ~ 369 (706)
T 2z3z_A 369 R 369 (706)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-20 Score=171.80 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=164.6
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~ 182 (445)
.++++++++++++++.++.|.+||.. +++....+..+....+..++|+|+++.+++++ .++.|.+||+.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~---- 77 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN---- 77 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE----
T ss_pred cccccCCCEEEEEeCCCCeEEEEECC--CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE----
Confidence 45678899999999999999999985 46555555433323688999999987776665 468999999873322
Q ss_pred ccccccccccccCCCCCceEEEEeecccC-----CCceeEEEECCCCCeEEEEEec-----------CCeEEEEEccCCC
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQN-----GEQITALSWGPDGRYLASASYE-----------SSSFTIWDVAQGL 246 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d-----------~g~v~vwd~~~~~ 246 (445)
...+.... ...+..++|+|+|++|++++.+ .+.|.+||+.+++
T Consensus 78 ---------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 78 ---------------------TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp ---------------------EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred ---------------------EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 11122111 1347889999999999998865 3599999998854
Q ss_pred c---eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc-ccCC----------------------------
Q 013338 247 G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST---------------------------- 294 (445)
Q Consensus 247 ~---~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~---------------------------- 294 (445)
. .....+...+.+++|+|+|+ +++++. .|++||+.+++... +...
T Consensus 137 ~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 137 EAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp GBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 3 23344556789999999999 665543 49999998877522 1111
Q ss_pred ----------------------------------------CCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 295 ----------------------------------------SGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 295 ----------------------------------------~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
...+..++|+| ++++++++ +..+..|++.
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~------- 283 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLK------- 283 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETT-------
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECc-------
Confidence 01345677889 99998876 3445555432
Q ss_pred ccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 334 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.+.+..+.....+.+++|+|+|++|++++.+ +.|++||+++++.+
T Consensus 284 ------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 284 ------QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF------NDLAVFNPDTLEKV 329 (349)
T ss_dssp ------TTEEEEEEECSSCCCEEEECSSSSCEEEESBS------SEEEEEETTTTEEE
T ss_pred ------cCeEEEEEcCCCCccceEECCCCCEEEEecCC------CeEEEEecccccee
Confidence 22333344333367899999999999887555 89999999987765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=177.55 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=144.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC------C--ccee----EEecCCCCCeeEEEECcCCCcEE----E
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE------G--KDAC----ILTSDSQRDVKVLEWRPNGGRSL----S 161 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~------~--~~~~----~~~~~~~~~v~~l~~spd~~~l~----~ 161 (445)
....++.+++++++.++++++.++ ++||+..... . .... .....+...|++++|+|+++.|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999998887 8888753110 0 0000 01123567899999999988877 4
Q ss_pred EecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-CCeEEEEEecCCeEEEE
Q 013338 162 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIW 240 (445)
Q Consensus 162 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~g~v~vw 240 (445)
++.|+.|+|||+........ . ....+.....+.+|. ..|.+++|+|+ +++|++++.| |+|++|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~-~-------------~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~D-g~v~iw 177 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAK-Q-------------QKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLAD-GSIAVL 177 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTC-S-------------SCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEETT-SCEEEE
T ss_pred cCCCceEEEEEccccccCCc-C-------------CcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEECC-CeEEEE
Confidence 45689999999873200000 0 000112345566675 79999999997 7889999999 799999
Q ss_pred EccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-------CCCCeeEEEECCCCCeEEE
Q 013338 241 DVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 241 d~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~ 312 (445)
|++++... ....|...|.+++|+|+|++|++|+.||+|++||++......+.. |...+.+++|++++.++++
T Consensus 178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~ 257 (434)
T 2oit_A 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257 (434)
T ss_dssp EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence 99987543 344567899999999999999999999999999998322222221 2337899999999888876
Q ss_pred EEcCC
Q 013338 313 AFAGS 317 (445)
Q Consensus 313 ~~~~~ 317 (445)
....+
T Consensus 258 ~~~~d 262 (434)
T 2oit_A 258 YAAAD 262 (434)
T ss_dssp EEETT
T ss_pred EccCC
Confidence 55444
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-21 Score=173.25 Aligned_cols=237 Identities=13% Similarity=0.050 Sum_probs=167.1
Q ss_pred CeeEEEEccCCCEEEE-EECCCeEEEEEccCCCCcceeEEecCC----CCCeeEEEECcCCCcEEEEe------------
Q 013338 101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDS----QRDVKVLEWRPNGGRSLSVG------------ 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~l~~spd~~~l~~~~------------ 163 (445)
.+..++|+|+|+++++ +..++.|.+||+. +++....+..++ ...+.+++|+|+|+.++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV--TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETT--TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECC--CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence 3678999999987654 4567899999985 355555444332 12678899999988887775
Q ss_pred cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 164 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 164 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
.++.|.+||+.... ....+... ..+.+++|+|++++|+++ + +.|.+||+.
T Consensus 113 ~~~~i~v~d~~~~~-------------------------~~~~~~~~--~~~~~~~~s~dg~~l~~~--~-~~i~~~d~~ 162 (337)
T 1pby_B 113 QPTRVALYDAETLS-------------------------RRKAFEAP--RQITMLAWARDGSKLYGL--G-RDLHVMDPE 162 (337)
T ss_dssp CCCEEEEEETTTTE-------------------------EEEEEECC--SSCCCEEECTTSSCEEEE--S-SSEEEEETT
T ss_pred cCceEEEEECCCCc-------------------------EEEEEeCC--CCcceeEECCCCCEEEEe--C-CeEEEEECC
Confidence 46999999987321 22223222 467889999999998888 5 689999999
Q ss_pred CCCceeeecCCCCeeEEEEcCCCCEEEEEecCC------------------------eEEEEeCCCCCcc--cccCCCCC
Q 013338 244 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG------------------------TFYLWETNTWTSE--PWSSTSGF 297 (445)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg------------------------~v~iwd~~~~~~~--~~~~~~~~ 297 (445)
+++.............+.|+|+++.++..+..+ .|.+||+.+++.. .+..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 887654443322122347899998776544332 4789999998764 23345567
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
+.+++|+|++++++++ +..+..|++. +.+.+..+..+..+.+++|+|+|++|++++.+
T Consensus 243 ~~~~~~s~dg~~l~~~---~~~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------ 300 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA---YNVLESFDLE-------------KNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL------ 300 (337)
T ss_dssp EEEEEECTTSSEEEEE---ESEEEEEETT-------------TTEEEEEEECSSCCCEEEECTTSCEEEEESBS------
T ss_pred eeeEEECCCCCEEEEe---CCeEEEEECC-------------CCcCcceecCCCceeeEEECCCCCEEEEEcCC------
Confidence 8899999999999877 2445555432 22333444444468899999999999988655
Q ss_pred eEEEEEEccCCCee
Q 013338 378 GLIAIYDARRTPLI 391 (445)
Q Consensus 378 ~~i~vwd~~~~~~~ 391 (445)
+.|++||+.+++.+
T Consensus 301 ~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 301 GDLAAYDAETLEKK 314 (337)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CcEEEEECcCCcEE
Confidence 89999999988765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-19 Score=165.08 Aligned_cols=288 Identities=11% Similarity=0.095 Sum_probs=181.1
Q ss_pred EEEEEECC--CeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccc
Q 013338 113 IVAFISGS--TQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS 188 (445)
Q Consensus 113 ~la~~~~d--~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 188 (445)
+|+.|+.. +.|.+|+++..+++...... ......+..++|+||++.+++++.+ .|.+|++...+....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------- 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------- 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-------
Confidence 35556643 57888888765665432221 1234568899999998778777776 999999861111110
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe--EEEEE-------------ecCCeEEEEEcc-CCCceee-e
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY--LASAS-------------YESSSFTIWDVA-QGLGTPI-R 251 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~-------------~d~g~v~vwd~~-~~~~~~~-~ 251 (445)
......+ +.+..++|+|+|++ +++++ .+ |.+.+|++. +++.... .
T Consensus 76 ---------------~~~~~~~--g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 76 ---------------EASHPIG--GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA-GYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp ---------------EEEEECC--SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC-CEEEEEEECTTCCEEEEEE
T ss_pred ---------------eeEeecC--CCCccEEECCCCCEEEEEEecCCcceeccceeecCC-ceEEEEccCCCCcCcceEe
Confidence 1111111 23566899999995 44443 35 799999997 4544322 2
Q ss_pred ----cCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCC-CCCccc---cc--CCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 252 ----RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN-TWTSEP---WS--STSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 252 ----~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~-~~~~~~---~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.+...+.+++|+|+|++|+++.. ++.|++||+. +++... +. .+...+..++|+|+|++++++...+..+
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence 24567999999999998887664 6799999998 676532 21 2356789999999999998887666666
Q ss_pred EEEEeccCCCCccccccCccccccccc----cCCC-------ccceEE-eCCCCCEEEEEEcCCCcccceEEEEEEcc-C
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSL----TGSQ-------GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDAR-R 387 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~v~~~~-~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~ 387 (445)
..+++.......... ...+..+ .++. .+..++ |+|||++|+++..+.+....+.|.+|++. +
T Consensus 218 ~v~~~~~~~g~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 218 CEYVIDPATHMPVYT-----HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEEECTTTCCEEEE-----EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred EEEEEeCCCCcEEEc-----cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 666543211100000 0001111 1222 478899 99999999887654210001289999996 5
Q ss_pred CCeeeeeeeeeeeCCCCCCCceeEee---cCCCCCCCeEEEEe-cCeeeEeeeee
Q 013338 388 TPLISLSLIGFIRGPGDNPKPVAFSF---HDKFKQGPLLSVCW-SSGFCCTYPLI 438 (445)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~v~~v~~sp---dg~~~~~~~l~~~~-~~G~v~~~~~~ 438 (445)
+++... ......+...+..++|+| ||++ |.++. .++.|.+|++.
T Consensus 293 g~~~~~--~~~~~~~~~~~~~~a~sp~~~dg~~-----l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 293 GSIEKQ--LFLSPTPTSGGHSNAVSPCPWSDEW-----MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp SCEEEE--EEEEECSSCCTTCCCEEECTTCTTE-----EEEECSSSCEEEEEEEE
T ss_pred CCEEEe--eeeeecCCCCcccceecCCCcCCCE-----EEEEEcCCCeEEEEEEc
Confidence 554311 112334556678999999 7775 55554 46899988764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-20 Score=185.24 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=166.0
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCC-----CeeEEEECcCCCcEEEEecC---------Cc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR-----DVKVLEWRPNGGRSLSVGCK---------GG 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~l~~spd~~~l~~~~~d---------g~ 167 (445)
..+++|+|||++++++ |+.|++|++.. ++....+ .+|.. ...+++|||||+.+++++.+ +.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEY--GNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTT--CCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCC--CceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 5589999999999886 99999999854 5544433 34432 23458999999888887765 56
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
+.+||+..+.. . .+..+. ..+..++|||||+.|+++. + +.|++|++.+++.
T Consensus 94 ~~~~d~~~~~~-~-------------------------~l~~~~-~~~~~~~~SPdG~~la~~~-~-~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 94 YDIYDLNKRQL-I-------------------------TEERIP-NNTQWVTWSPVGHKLAYVW-N-NDIYVKIEPNLPS 144 (740)
T ss_dssp EEEEETTTTEE-C-------------------------CSSCCC-TTEEEEEECSSTTCEEEEE-T-TEEEEESSTTSCC
T ss_pred EEEEECCCCcE-E-------------------------EcccCC-CcceeeEECCCCCEEEEEE-C-CeEEEEECCCCce
Confidence 67999883321 1 133333 6789999999999999985 5 5999999998876
Q ss_pred eeeecC--CCCe-----------------eEEEEcCCCCEEEEEecCC--------------------------------
Q 013338 248 TPIRRG--FGGL-----------------SILKWSPTGDYFFAAKFDG-------------------------------- 276 (445)
Q Consensus 248 ~~~~~~--~~~v-----------------~~~~~sp~g~~l~~~~~dg-------------------------------- 276 (445)
.++... ...+ ..+.|||||++|+.++.|.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~ 224 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV 224 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence 655432 2222 3589999999999875321
Q ss_pred ----eEEEEeCCC---C---Cccccc------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc
Q 013338 277 ----TFYLWETNT---W---TSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD 340 (445)
Q Consensus 277 ----~v~iwd~~~---~---~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+|++||+.+ + +...+. .+...+..++|+|||+.++...........+.+++....... + .
T Consensus 225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~--~--~ 300 (740)
T 4a5s_A 225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR--W--N 300 (740)
T ss_dssp CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE--E--E
T ss_pred CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc--c--c
Confidence 588999998 7 443333 266778999999999977765544433444444432110000 0 0
Q ss_pred ccccccc--cCCC-ccc-----eEEeCCCCCEEE-EEEcCCCcccceEEEEEEccCCCee
Q 013338 341 LPDIVSL--TGSQ-GIE-----KIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 341 ~~~~~~~--~~~~-~v~-----~~~~sp~g~~l~-~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
...+..+ ..+. .+. .++|+|||+.|+ ..+..... ..|++||+.+++..
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~---~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY---RHICYFQIDKKDCT 357 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC---EEEEEEETTCSSCE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc---eEEEEEECCCCceE
Confidence 0012222 2333 343 789999999888 66654332 78999999876654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=190.91 Aligned_cols=280 Identities=15% Similarity=0.172 Sum_probs=177.0
Q ss_pred CeeEEEEccCCCEEEEEEC---------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEE
Q 013338 101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW 171 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw 171 (445)
.|.+++|||||++||+++. ++.|++||++. ++..... .....+..++|||||+.|+++ .++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~--~l~~~~~~~~~SPDG~~la~~-~~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGN--ELPRPIQYLCWSPVGSKLAYV-YQNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSS--CCCSSBCCEEECSSTTCEEEE-ETTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--Cccccce--ecCcccccceECCCCCEEEEE-ECCeEEEE
Confidence 4889999999999999876 68999999853 4331001 113568899999998887776 47899999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccC--------CCceeEEEECCCCCeEEEEEecCC--------
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS-------- 235 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~g-------- 235 (445)
++..+........+.. . ..+.++. .....+++|||||++|++++.|++
T Consensus 136 ~~~~g~~~~l~~~~~~------------~----~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 136 QRPGDPPFQITFNGRE------------N----KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp SSTTSCCEECCCCCBT------------T----TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEE
T ss_pred eCCCCCcEEEecCCCc------------C----CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEee
Confidence 9974433221111100 0 0011111 022358999999999999886622
Q ss_pred -------------------------eEEEEEccCCCce---ee------ecCCCCeeEEEEcCCCCEEEEEecC----Ce
Q 013338 236 -------------------------SFTIWDVAQGLGT---PI------RRGFGGLSILKWSPTGDYFFAAKFD----GT 277 (445)
Q Consensus 236 -------------------------~v~vwd~~~~~~~---~~------~~~~~~v~~~~~sp~g~~l~~~~~d----g~ 277 (445)
.|++||+.+++.. .+ ..+...+.+++|+||++++++.... ..
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7889999887642 22 2466778999999998777664432 25
Q ss_pred EEEEe----CCCCCccccc-----CCCCCee-----EEEECCCCCeEEEE-EcCCceEEEEEeccCCCCccccccCcccc
Q 013338 278 FYLWE----TNTWTSEPWS-----STSGFVT-----GATWDPEGRMILLA-FAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 278 v~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~sp~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
|++|| ..+++...+. .+...+. .+.|+|||+.++.. ...++ ...+.+++. ...
T Consensus 280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g-~~~l~~~~~-----------~~~ 347 (719)
T 1z68_A 280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG-YKHIHYIKD-----------TVE 347 (719)
T ss_dssp EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS-CEEEEEESS-----------CST
T ss_pred EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC-ceEEEEEEC-----------CCC
Confidence 88999 8877764443 5566666 88999999987653 33333 233333332 222
Q ss_pred ccccccCCC-ccceEEeCCCCCEEEEEEcC--CCcccceEEEEEEccC--CCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 343 DIVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARR--TPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 343 ~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d--~~d~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
....+..+. .+..+.++ +++.|+..+.+ ..+ +..++|.+.. +......+...+.+|...+..+.|||||++
T Consensus 348 ~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~---~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~ 423 (719)
T 1z68_A 348 NAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYP---GRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY 423 (719)
T ss_dssp TCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCT---TCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred ceEecccCceEEEEEEEE-eCCEEEEEEecCCCCC---ceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence 233444444 57777777 88888877654 111 6678887753 321101011112235566778999999886
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-19 Score=165.42 Aligned_cols=248 Identities=12% Similarity=0.068 Sum_probs=164.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCc-EEEEe--------------cC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGR-SLSVG--------------CK 165 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~-l~~~~--------------~d 165 (445)
.+..++|+|||++|++++.+ .|.+|+++. +++..........+.+..++|+|||+. +++++ .+
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~-~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKS-PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEE-TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECC-CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 47789999999999988887 999999862 354433222111133667999999875 33332 47
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc-C
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-Q 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~-~ 244 (445)
+.+.+|++...+.... .+..+.......+.+++|+|||++|+++....+.|++||+. +
T Consensus 119 g~v~v~~~~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~ 177 (365)
T 1jof_A 119 GYGNVFSVSETGKLEK---------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp CEEEEEEECTTCCEEE---------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEccCCCCcCcc---------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence 8999999974332211 11111111235789999999999988876533599999998 6
Q ss_pred CCceee--ec---CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCC--CCCcc-------cccC----CCC------Cee
Q 013338 245 GLGTPI--RR---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN--TWTSE-------PWSS----TSG------FVT 299 (445)
Q Consensus 245 ~~~~~~--~~---~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~--~~~~~-------~~~~----~~~------~v~ 299 (445)
++.... .. +...+..++|+|+|++|++++. ++.|.+|+++ +++.. .+.. +.. .+.
T Consensus 178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence 765322 11 3567999999999999987765 6899999765 45431 1111 121 478
Q ss_pred EEE-ECCCCCeEEEEEcCCc-----eEEEEEeccCCCCccccccCccccccc---cccCCC-ccceEEeCC---CCCEEE
Q 013338 300 GAT-WDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIV---SLTGSQ-GIEKIAWDA---SGERLA 366 (445)
Q Consensus 300 ~~~-~sp~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~v~~~~~sp---~g~~l~ 366 (445)
.++ |+|||++|+++..... .+..|++.. ++.... ....+. .+..++|+| ||++|+
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~------------~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~ 325 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRD------------CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA 325 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT------------TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC------------CCCEEEeeeeeecCCCCcccceecCCCcCCCEEE
Confidence 999 9999999887654332 455555421 111111 122233 578899999 899999
Q ss_pred EEEcCCCcccceEEEEEEccCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
+++.++ +.|.+|+++..
T Consensus 326 v~~~~~-----~~v~v~~~~~~ 342 (365)
T 1jof_A 326 ITDDQE-----GWLEIYRWKDE 342 (365)
T ss_dssp EECSSS-----CEEEEEEEETT
T ss_pred EEEcCC-----CeEEEEEEchh
Confidence 987642 78999999865
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-19 Score=161.29 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=165.3
Q ss_pred CCeeEEEEccCCCEEEEE-ECCCeEEEEEccCCCCcceeEEecCCCC--------CeeEEEECcCCCcEEEEe--cCCcE
Q 013338 100 VDLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSEGKDACILTSDSQR--------DVKVLEWRPNGGRSLSVG--CKGGI 168 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~v~~l~~spd~~~l~~~~--~dg~i 168 (445)
..+..++|+|+|++++++ ..++.|.+||.. +++....+..++.. .+.+++|+|+++.+++++ .++.|
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAK--TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETT--TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCC--CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 347789999999966555 457999999985 45555555432222 278899999988887776 36889
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+||.... .....+..+ ...+.+++|+|+++++++++.+ +.|.+||+.+++..
T Consensus 167 ~~~d~~~~-------------------------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~-~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 167 WVVDGGNI-------------------------KLKTAIQNT-GKMSTGLALDSEGKRLYTTNAD-GELITIDTADNKIL 219 (353)
T ss_dssp EEEETTTT-------------------------EEEEEECCC-CTTCCCCEEETTTTEEEEECTT-SEEEEEETTTTEEE
T ss_pred EEEcCCCC-------------------------ceEEEecCC-CCccceEEECCCCCEEEEEcCC-CeEEEEECCCCeEE
Confidence 99998732 223333323 2457889999999999999887 69999999988765
Q ss_pred eeec-----CCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 249 PIRR-----GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 249 ~~~~-----~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.... +...+..++|+|+|+++++++. ++.|++||..+++......... ...++|+|++++++++...+..+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 220 SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEE
Confidence 4332 3456788999999998776665 5899999999988743222222 2579999999988888766666666
Q ss_pred EEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcC
Q 013338 323 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d 371 (445)
|+.. +.+.+..+.....+.+++|+|||++|+++..+
T Consensus 299 ~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 299 IDAK-------------SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EETT-------------TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EECC-------------CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 6643 23334444444468999999999988877655
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=179.85 Aligned_cols=238 Identities=13% Similarity=0.105 Sum_probs=162.6
Q ss_pred CCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
+..+|++++|+|||+.|++++. +|+++||++. .+.. ..+..++...+..++|+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-------------------------~~lt~~~~~~~~~~~~s 73 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-------------------------VKLNREPINSVLDPHYG 73 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-------------------------EECCSSCCSEECEECTT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-------------------------EeeecccccccccccCC
Confidence 3557999999999999998887 8999999975 2221 12333333578999999
Q ss_pred CCCCeEEEEEe---cCCeEEEEEccC---CCceeeecCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCcccccCC
Q 013338 222 PDGRYLASASY---ESSSFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSST 294 (445)
Q Consensus 222 p~~~~l~~~~~---d~g~v~vwd~~~---~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~~~ 294 (445)
|| +.+++++. + ....+|.+.. +....+. ....+...+|+|+|+.+ ++.+.++.+.+||+.+++...+..+
T Consensus 74 pd-~~l~~~~~~~g~-~~~~l~~~~~~~~g~~~~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 74 VG-RVILVRDVSKGA-EQHALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp CS-EEEEEEECSTTS-CCEEEEEEETTSTTCCEECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred CC-eEEEEeccCCCC-cceEEEEEeccCCCcccccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 99 77777664 3 3556665543 3233332 23345577899988643 3444455566999999887666544
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
.. .+++|+|||++|+++.........+.+++. .......+..+. .+..++|||||++|+++..++.
T Consensus 151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~-----------~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL-----------SSGGLRVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp SS--CEEEEEEETTEEEEEEEEETTEEEEEEEET-----------TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC-----------CCCCceEeecCCCccccceECCCCCEEEEccCCCe
Confidence 43 789999999999966543222233444442 223344566666 7899999999999996655511
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCcee--------EeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA--------FSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~--------~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..|++||+.+++.. .+.+|...+..++ |||||+ ++..+..+|.+.+|.+
T Consensus 218 ----~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~-----~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 218 ----ARLVTVDPRDGSVE------DLELPSKDFSSYRPTAITWLGYLPDGR-----LAVVARREGRSAVFID 274 (582)
T ss_dssp ----EEEEEECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEECTTSC-----EEEEEEETTEEEEEET
T ss_pred ----eEEEEEcCCCCcEE------EccCCCcChhhhhhccccceeEcCCCc-----EEEEEEcCCcEEEEEE
Confidence 38999999987654 3456777778888 999984 4667777888888865
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=167.77 Aligned_cols=301 Identities=10% Similarity=0.007 Sum_probs=181.9
Q ss_pred eeEEEEccCCCEEEEEECC-C--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGS-T--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
+..++|||||++||+.... + .+.+|++. +++. ..+..++......+.|+|||+.|++++.++.|.+|++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~--~~~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~- 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE--TQQA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE- 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETT--TTEE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECC--CCcE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-
Confidence 5678999999999887643 3 56666763 3443 33333333223348899999999899888899999987432
Q ss_pred ccccccccccccccccCCCCCceEEEE-eecccCCCc-----eeEEEECCCCCeEEEEE-----ecCCeEEEEEccCCCc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQ-----ITALSWGPDGRYLASAS-----YESSSFTIWDVAQGLG 247 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----v~~~~~sp~~~~l~~~~-----~d~g~v~vwd~~~~~~ 247 (445)
...+..... .|.... .+....... ...+.|+|+++.+++.. .+ ..|.+||+.+++.
T Consensus 114 ~~~~~~~~~------------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~-~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 114 EQVIYTVDE------------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT-CRLIKVDIETGEL 180 (396)
T ss_dssp EEEEEECCT------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC-EEEEEEETTTCCE
T ss_pred cEEEEeccc------------ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc-ceEEEEECCCCcE
Confidence 222211100 011000 000000000 01145789998887653 34 5899999999887
Q ss_pred eeeecCCCCeeEEEEcC-CCCEEEEEecC------CeEEEEeCCCCCcccccCC--CCCeeEEEECCCCCeEEEEEcC-C
Q 013338 248 TPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAG-S 317 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp-~g~~l~~~~~d------g~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~-~ 317 (445)
..+..+...+..+.|+| +++.|+..+.+ ..|++||+.+++...+..+ ...+..++|+|+|++|+++... .
T Consensus 181 ~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 181 EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 77777778899999999 78877766543 4699999987766555443 2357889999999988766432 1
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCC-CCCEEEEEEcCCC----------cccceEEEEEEcc
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGD----------DIYKGLIAIYDAR 386 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~s~d~~----------d~~d~~i~vwd~~ 386 (445)
.....+.+++.. + .....+....... +.|+| ||+++++++.+.. ...+..|++||+.
T Consensus 261 ~~~~~l~~~d~~----------~-g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 261 QTDRVIYKANPE----------T-LENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TCCEEEEEECTT----------T-CCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CccceEEEEECC----------C-CCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 112334444432 1 1111111111122 89999 9998887653200 0012789999998
Q ss_pred CCCeeeeeeeeeeeCCCC-----------CCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeec
Q 013338 387 RTPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~-----------~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~ 441 (445)
+++.. .+..+.. .+..++|+|||++ ++.....+|...+|.+....
T Consensus 329 ~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 329 AKSAQ------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG----VLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp TTBCC------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCT
T ss_pred cCceE------EccCCCCccccccccccCCCCCceEccCCCe----EEEEecCCCCceEEEEEEcc
Confidence 87653 2233332 2567899999875 34444456777777665443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-18 Score=162.23 Aligned_cols=199 Identities=13% Similarity=0.079 Sum_probs=139.6
Q ss_pred cCCeeEEEEccCCCEEE----EEECCCeEEEEEccCC-----CC-cce--eEEecCCCCCeeEEEECcC-CCcEEEEecC
Q 013338 99 EVDLQGVSWHQHKHIVA----FISGSTQVIVRDYEDS-----EG-KDA--CILTSDSQRDVKVLEWRPN-GGRSLSVGCK 165 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la----~~~~d~~i~iw~~~~~-----~~-~~~--~~~~~~~~~~v~~l~~spd-~~~l~~~~~d 165 (445)
...|.+++|+|+|++|| +++.|+.|+|||+... .. +.+ .....+|...|++++|+|+ +..+++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 34699999999999999 7788999999998642 00 111 2233468999999999998 5667778889
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG 245 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~ 245 (445)
|+|++||+... .......+|. ..|.+++|+|+|++|++++.| |.|++||++ +
T Consensus 172 g~v~iwD~~~~-------------------------~~~~~~~~~~-~~v~~v~wspdg~~lasgs~d-g~v~iwd~~-~ 223 (434)
T 2oit_A 172 GSIAVLQVTET-------------------------VKVCATLPST-VAVTSVCWSPKGKQLAVGKQN-GTVVQYLPT-L 223 (434)
T ss_dssp SCEEEEEESSS-------------------------EEEEEEECGG-GCEEEEEECTTSSCEEEEETT-SCEEEECTT-C
T ss_pred CeEEEEEcCCC-------------------------cceeeccCCC-CceeEEEEcCCCCEEEEEcCC-CcEEEEccC-C
Confidence 99999999832 1222234454 789999999999999999999 799999998 4
Q ss_pred Ccee-eecC-------CCCeeEEEEcCCCCEEEEE-ecCC------eEEEEeCCCCCc------cccc-------CCCCC
Q 013338 246 LGTP-IRRG-------FGGLSILKWSPTGDYFFAA-KFDG------TFYLWETNTWTS------EPWS-------STSGF 297 (445)
Q Consensus 246 ~~~~-~~~~-------~~~v~~~~~sp~g~~l~~~-~~dg------~v~iwd~~~~~~------~~~~-------~~~~~ 297 (445)
+... +..+ ...|.+++|++++.++++. ..+| .+++|++++.+. ..+. ....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 224 QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 3322 2222 2378999999988877543 3443 389999986532 1111 11122
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
...+.+-++.++++++......+..+..
T Consensus 304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 304 HYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred ceeeehhccCCEEEEecCCCCceeEEEe
Confidence 2233344777888888776666666664
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=160.01 Aligned_cols=238 Identities=10% Similarity=-0.035 Sum_probs=155.7
Q ss_pred EEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE
Q 013338 149 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA 228 (445)
Q Consensus 149 ~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 228 (445)
.+++++++..+++.+.++.|.+||+.... ....+..+....+..++|+|+++.++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~s~dg~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------------------------VYKSCVMPDKFGPGTAMMAPDNRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTE-------------------------EEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCc-------------------------EEEEEecCCCCCCceeEECCCCCEEE
Confidence 45677886667777788999999987322 22233322212578999999999777
Q ss_pred EEEecCCeEEEEEccCCCceeeecCC-------CCeeEEEEcCCCCEEEEEecC------------CeEEEEeCCCCCcc
Q 013338 229 SASYESSSFTIWDVAQGLGTPIRRGF-------GGLSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTSE 289 (445)
Q Consensus 229 ~~~~d~g~v~vwd~~~~~~~~~~~~~-------~~v~~~~~sp~g~~l~~~~~d------------g~v~iwd~~~~~~~ 289 (445)
+++..++.|.+||+.+++........ ..+..++|+|+|++|++++.+ +.|++||+.+++..
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 66544479999999988765443322 237899999999999988865 89999999885542
Q ss_pred c---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc-------------------------
Q 013338 290 P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL------------------------- 341 (445)
Q Consensus 290 ~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 341 (445)
. ...+...+.+++|+|+|+ ++++ +. .+..+++.... .....+...
T Consensus 139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~--~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 139 KPVRTFPMPRQVYLMRAADDGS-LYVA-GP--DIYKMDVKTGK---YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp CCSEEEECCSSCCCEEECTTSC-EEEE-SS--SEEEECTTTCC---EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred ceeeeccCCCcccceeECCCCc-EEEc-cC--cEEEEeCCCCc---eeccccccccCCccccCccceeeecCCCcceeEE
Confidence 2 223445688999999999 5544 22 24444332211 000000000
Q ss_pred -------------------------------cccc--cccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 342 -------------------------------PDIV--SLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 342 -------------------------------~~~~--~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
..+. .+..+. .+..++|+| +|++|+++ + +.|.+||+.
T Consensus 212 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~------~~v~~~d~~ 283 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L------NRLAKYDLK 283 (349)
T ss_dssp EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E------SEEEEEETT
T ss_pred eeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c------CeEEEEECc
Confidence 0000 000011 456788999 99999987 4 789999999
Q ss_pred CCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 387 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+++... .+. ....+.+++|+|||++ |.++..++.|.+|+.
T Consensus 284 ~~~~~~-----~~~-~~~~~~~~~~s~dg~~-----l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 284 QRKLIK-----AAN-LDHTYYCVAFDKKGDK-----LYLGGTFNDLAVFNP 323 (349)
T ss_dssp TTEEEE-----EEE-CSSCCCEEEECSSSSC-----EEEESBSSEEEEEET
T ss_pred cCeEEE-----EEc-CCCCccceEECCCCCE-----EEEecCCCeEEEEec
Confidence 877652 232 2345789999999876 445667788988876
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=168.87 Aligned_cols=278 Identities=13% Similarity=0.123 Sum_probs=168.3
Q ss_pred eEEEEccCCCEEEEEECC---------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 103 QGVSWHQHKHIVAFISGS---------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
..++|||||++|++++.+ +.+.+||+.. ++... + ..|...+..++|||||+.|+.+ .++.|++|++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~-l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLIT-E-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECC-S-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--CcEEE-c-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence 458999999999998876 5567999853 44322 2 3567789999999998888776 5789999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccC--------CCceeEEEECCCCCeEEEEEecCC----------
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS---------- 235 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~g---------- 235 (445)
..+...+....+. ..+ .+.++. ......+.|||||+.|++++.|.+
T Consensus 140 ~~~~~~~lt~~g~------------~~~----~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 140 PNLPSYRITWTGK------------EDI----IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp TTSCCEECCSCCB------------TTT----EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred CCCceEEEcCCCC------------ccc----eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEee
Confidence 7443222111110 000 011111 023356899999999999875432
Q ss_pred -------------------------eEEEEEccC---C---Cceeeec------CCCCeeEEEEcCCCCEEEEEec----
Q 013338 236 -------------------------SFTIWDVAQ---G---LGTPIRR------GFGGLSILKWSPTGDYFFAAKF---- 274 (445)
Q Consensus 236 -------------------------~v~vwd~~~---~---~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~---- 274 (445)
+|++||+.+ + +...+.. +...+..++|+|||+.++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~ 283 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence 478899888 7 3444432 5667899999999997765533
Q ss_pred CCeEEEEeCCCCC----c---ccc--cCCCCCee-----EEEECCCCCeEE-EEEcCCceEEEEEeccCCCCccccccCc
Q 013338 275 DGTFYLWETNTWT----S---EPW--SSTSGFVT-----GATWDPEGRMIL-LAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 275 dg~v~iwd~~~~~----~---~~~--~~~~~~v~-----~~~~sp~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
+..|++||+.+++ + ..+ ..+...+. .+.|+|||+.++ .....++. ..+.+++.
T Consensus 284 ~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~-~~l~~~~~----------- 351 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY-RHICYFQI----------- 351 (740)
T ss_dssp EEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC-EEEEEEET-----------
T ss_pred EEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc-eEEEEEEC-----------
Confidence 2379999999987 3 222 24555544 789999999887 55544443 23333322
Q ss_pred cccccccccCCC-ccceEEeCCCCCEEEEEEcC--CCcccceEEEEEEccCCCeeeeeeee-eeeCCCCCCCceeEeecC
Q 013338 340 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 340 ~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d--~~d~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~v~~v~~spdg 415 (445)
.......+.... .+..+.+ +|++.|+..+.. .+. ....|+..++..+... ..+. .+.+.......+.|||||
T Consensus 352 ~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~-~~~~ly~v~~~g~~~~--~~lt~~~~~~~~~~~~~~~S~dg 427 (740)
T 4a5s_A 352 DKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMP-GGRNLYKIQLIDYTKV--TCLSCELNPERCQYYSVSFSKEA 427 (740)
T ss_dssp TCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCT-TCBEEEEEETTEEEEE--EESSTTTSTTTBCBEEEEECTTS
T ss_pred CCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCC-ceeEEEEEECCCCCcc--eeeccccCCCCCceEEEEECCCC
Confidence 223333444333 4555442 447776665543 111 1134555555443221 0110 011223457789999999
Q ss_pred CC
Q 013338 416 KF 417 (445)
Q Consensus 416 ~~ 417 (445)
++
T Consensus 428 ~~ 429 (740)
T 4a5s_A 428 KY 429 (740)
T ss_dssp SE
T ss_pred CE
Confidence 85
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-17 Score=153.16 Aligned_cols=242 Identities=11% Similarity=0.025 Sum_probs=157.9
Q ss_pred CCCcceeEEecCCCCCeeE-----EEECcCCCcEEEEec-CCc--EEEEccCCCCCccccccccccccccccCCCCCceE
Q 013338 131 SEGKDACILTSDSQRDVKV-----LEWRPNGGRSLSVGC-KGG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT 202 (445)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~-----l~~spd~~~l~~~~~-dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
.++.....++ .|...... .+|+|||++|++++. ++. |.+||+....
T Consensus 18 ~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~------------------------- 71 (388)
T 3pe7_A 18 STGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV------------------------- 71 (388)
T ss_dssp TTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------------------
T ss_pred CCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------------------
Confidence 3455555553 35544554 889999999998887 564 6777776221
Q ss_pred EEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCC-CCeeEEE--EcCCCCEEEEEe------
Q 013338 203 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILK--WSPTGDYFFAAK------ 273 (445)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~-~~v~~~~--~sp~g~~l~~~~------ 273 (445)
......++ ...+..+.|+|||+.|++++.+ +.|++||+.+++...+.... ..+.... ++|++++++...
T Consensus 72 ~~~lt~~~-~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 72 ATQLTEGR-GDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp EEECCCSS-CBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred eEEeeeCC-CCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccc
Confidence 11112222 2344567899999999999988 59999999998876655443 3343333 489999887432
Q ss_pred ----------------cCCeEEEEeCCCCCcccccCCCCCeeEEEECC-CCCeEEEEEcC-----CceEEEEEeccCCCC
Q 013338 274 ----------------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAFAG-----SLTLGSIHFASKPPS 331 (445)
Q Consensus 274 ----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~-----~~~~~~~~~~~~~~~ 331 (445)
.+..|++||+.+++...+..+...+..+.|+| ||+.|++.... ...++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~------ 223 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE------ 223 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET------
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC------
Confidence 34689999999998877777777899999999 99999876543 123444433
Q ss_pred ccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC---CC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG---DN 405 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~ 405 (445)
.......+..+. .+..++|+|||+.|+..+..... .+..|++||+.+++..... .+.++. ..
T Consensus 224 --------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~ 291 (388)
T 3pe7_A 224 --------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS-PDRFIYSADPETLENRQLT---SMPACSHLMSN 291 (388)
T ss_dssp --------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC-CCEEEEEECTTTCCEEEEE---EECCEEEEEEC
T ss_pred --------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC-CcceEEEEecCCCceEEEE---cCCCceeeeec
Confidence 222233333332 47788999999988776543211 1135999999988754321 222210 11
Q ss_pred CCceeEeecCCCC
Q 013338 406 PKPVAFSFHDKFK 418 (445)
Q Consensus 406 v~~v~~spdg~~~ 418 (445)
...++|+|||+..
T Consensus 292 ~~~~~~spdg~~l 304 (388)
T 3pe7_A 292 YDGSLMVGDGSDA 304 (388)
T ss_dssp TTSSEEEEEECCC
T ss_pred CCCCeEccCCCcc
Confidence 3456899999863
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-17 Score=150.08 Aligned_cols=256 Identities=11% Similarity=0.044 Sum_probs=170.6
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC-----CCCCeeEEEECcCCCcEEEEec--CC
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC--KG 166 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~l~~spd~~~l~~~~~--dg 166 (445)
.++|+|||++|++++ .++.|.+||.. +.+....+... +......++|+|||++++++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc--CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence 899999999999886 26679999975 45555544322 2345778999999888888764 57
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEe-ecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~ 244 (445)
.|.+||+...+ .+.. +.. .....+.+.|++ ..+++.+.| |.+.+|++..
T Consensus 132 ~v~v~d~~~~~-------------------------~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~d-g~~~~v~~~~ 182 (361)
T 2oiz_A 132 SIGIVDVAKGD-------------------------YVEDVTAA---AGCWSVIPQPNRPRSFMTICGD-GGLLTINLGE 182 (361)
T ss_dssp EEEEEETTTTE-------------------------EEEEEGGG---TTEEEEEECTTSSSEEEEEETT-SSEEEEEECT
T ss_pred eEEEEECCCCc-------------------------EEEEEecC---CCcceeEEcCCCCeeEEEECCC-CcEEEEEECC
Confidence 89999998432 2222 221 122335667765 456666667 7888888865
Q ss_pred -CCcee------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-----C--------CCCCeeEEEEC
Q 013338 245 -GLGTP------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----S--------TSGFVTGATWD 304 (445)
Q Consensus 245 -~~~~~------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~--------~~~~v~~~~~s 304 (445)
++... ..........+.++|++..++..+.++.|+++|+...+..... . .......++|+
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 43331 1111122223445678888888888999999999765432110 0 01112237899
Q ss_pred CCCCeEEEEEc-C---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc
Q 013338 305 PEGRMILLAFA-G---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 305 p~~~~l~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
|+++.++++.. + ...+..|++. +.+.+.++..+. +.+++|+|||++|++++ +
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~-------------t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~--- 324 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-------------TKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G--- 324 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETT-------------TTEEEEEEECTT-CCEEEEETTTTEEEEEC-S---
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECC-------------CCcEEEEEecCC-eeEEEECCCCCEEEEeC-C---
Confidence 99998887654 1 2245555532 445666777776 99999999999998775 3
Q ss_pred ccceEEEEEEccCC--CeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 375 IYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 375 ~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
+.|.+||..++ +.+ +.+..++.....++|+|||+
T Consensus 325 ---~~v~v~D~~t~~l~~~-----~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 ---GNVNVYDISQPEPKLL-----RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ---SCEEEEECSSSSCEEE-----EEETTSCSSEEEEEECCCSC
T ss_pred ---CeEEEEECCCCcceee-----EEeccCCCCcEEEEecCCCC
Confidence 67999999998 544 45556677788999999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-17 Score=160.73 Aligned_cols=269 Identities=12% Similarity=0.057 Sum_probs=166.1
Q ss_pred CCeeEEEEccCCCEEEEE--ECCCeEEEEEccCCCCcceeEEecCCCCCee---------EEEEC--cCCCc-EEEEec-
Q 013338 100 VDLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSEGKDACILTSDSQRDVK---------VLEWR--PNGGR-SLSVGC- 164 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~l~~s--pd~~~-l~~~~~- 164 (445)
..+..++|++++.+++.. +.++...||... ..+. ...++ .+...+. ...|+ |||+. +++++.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGA-EESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSC-EEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCC-cceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 458899999887666666 458889999973 2333 33343 3555555 56665 99888 665554
Q ss_pred CCcEEEEccCC-C-CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--------
Q 013338 165 KGGICIWAPSY-P-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-------- 234 (445)
Q Consensus 165 dg~i~vw~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------- 234 (445)
+..|.++++.. . +....+.... ...+ ...+..++|||||+.|++++.+.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~--------------------~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVS--------------------AVGG-GLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCC--------------------CSTT-CEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCc--------------------cCCC-CccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 35555555430 1 2222211100 0002 25788999999999999988761
Q ss_pred -CeEEEEEccC------CCceeee-cCCCCeeEEEEcCCCCEEEEEecC--------CeEEEEeCC-CC---Cccccc-C
Q 013338 235 -SSFTIWDVAQ------GLGTPIR-RGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETN-TW---TSEPWS-S 293 (445)
Q Consensus 235 -g~v~vwd~~~------~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~-~~---~~~~~~-~ 293 (445)
..|++||+.+ ++...+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +...+. .
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 2799999988 6666666 666788899999999999987755 379999999 56 444444 3
Q ss_pred CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC---------ccceEEeCCCCCE
Q 013338 294 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---------GIEKIAWDASGER 364 (445)
Q Consensus 294 ~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~sp~g~~ 364 (445)
+...+..+.|+|||++++ ..+.++....+. ++.. ..+.......+. .+..++|+|++++
T Consensus 240 ~~~~~~~~~~spdg~l~~-~~~~~~~~~l~~-~~~~----------~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~ 307 (662)
T 3azo_A 240 PEEAIAQAEWAPDGSLIV-ATDRTGWWNLHR-VDPA----------TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI 307 (662)
T ss_dssp TTBCEEEEEECTTSCEEE-EECTTSSCEEEE-ECTT----------TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE
T ss_pred CCceEcceEECCCCeEEE-EECCCCCeEEEE-EECC----------CCceeecccccccccCccccccCceEeEeCCCEE
Confidence 467899999999999554 444444222222 2211 011111111111 2578999999998
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
+++++. +. ..|.++|+.+++.. .+..|...+..+ |+++++
T Consensus 308 ~~~~~~-~~----~~l~~~d~~~~~~~------~l~~~~~~~~~~-~s~~~~ 347 (662)
T 3azo_A 308 AVVHGK-GA----AVLGILDPESGELV------DAAGPWTEWAAT-LTVSGT 347 (662)
T ss_dssp EEEEBS-SS----CEEEEEETTTTEEE------ECCSSCCEEEEE-EEEETT
T ss_pred EEEEEc-Cc----cEEEEEECCCCcEE------EecCCCCeEEEE-EecCCC
Confidence 888765 32 33444466655432 445555555544 266665
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-16 Score=156.72 Aligned_cols=241 Identities=11% Similarity=0.027 Sum_probs=152.3
Q ss_pred EEEEc--cCCCE-EEEEECCCeEEEEEccCC--C-CcceeEEecC----CCCCeeEEEECcCCCcEEEEecC--------
Q 013338 104 GVSWH--QHKHI-VAFISGSTQVIVRDYEDS--E-GKDACILTSD----SQRDVKVLEWRPNGGRSLSVGCK-------- 165 (445)
Q Consensus 104 ~~~~s--p~g~~-la~~~~d~~i~iw~~~~~--~-~~~~~~~~~~----~~~~v~~l~~spd~~~l~~~~~d-------- 165 (445)
..+|+ |||++ |++++.. ...||.++.. . +. ...+... |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~-~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFG-DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTT-TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred cceeeeecCCCeEEEEEECC-CCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 45565 99998 8876542 3344544432 1 32 3333321 56678999999999989888866
Q ss_pred --CcEEEEccCCC-----CCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecC---
Q 013338 166 --GGICIWAPSYP-----GNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYES--- 234 (445)
Q Consensus 166 --g~i~vw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~--- 234 (445)
..|++|++... +.... +. .+. ..+..++|||||++|++++.+.
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~-------------------------l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRE-------------------------LSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEE-------------------------SSCSCS-SEECCCEECTTSSEEEEEEECTTCC
T ss_pred ceeEEEEEECCCCccccCCceeE-------------------------EEecCC-CcccCceECCCCCEEEEEECCCCCC
Confidence 57889998741 11111 22 222 5778899999999999888652
Q ss_pred ----CeEEEEEcc-CC---Cceeeec-CCCCeeEEEEcCCCCEEEEEecCC--eEEEEeCCCCCcccccCCCCC------
Q 013338 235 ----SSFTIWDVA-QG---LGTPIRR-GFGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGF------ 297 (445)
Q Consensus 235 ----g~v~vwd~~-~~---~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~------ 297 (445)
..|++||+. ++ +...+.. +...+..++|+|||++++++..++ .|++||+.+++...+..+...
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 379999998 56 4444544 367899999999999777888788 788888877776554433222
Q ss_pred ---eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEE--EcC
Q 013338 298 ---VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVS--YKG 371 (445)
Q Consensus 298 ---v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~--s~d 371 (445)
+..++|+|++++++++.. +....+.+.. ....+..+..+. .+..+ |+++++.++.. +.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~------------~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK--GAAVLGILDP------------ESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPR 357 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS--SSCEEEEEET------------TTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETT
T ss_pred cccCceEeEeCCCEEEEEEEc--CccEEEEEEC------------CCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCC
Confidence 457889999998886644 3333332211 222344555555 55555 14455544433 322
Q ss_pred CCcccceEEEEEEccCCCee
Q 013338 372 GDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 372 ~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ...|++||+.+++..
T Consensus 358 -~---~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 358 -T---AYEVVELDTVTGRAR 373 (662)
T ss_dssp -E---EEEEEEEETTTCCEE
T ss_pred -C---CCEEEEEECCCCceE
Confidence 1 135666777777654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-16 Score=142.51 Aligned_cols=269 Identities=14% Similarity=0.129 Sum_probs=174.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.|.+++|++++..++..+.++.++.|. +.....+ ..+...+.+++|+++++.+++...++.|.+|+.......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~- 79 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT-----AEPWLEI-SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK- 79 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE-----CEEEEEE-ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-
T ss_pred ccceeeecCCccceeEEeecccCcccc-----cceeEEE-eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-
Confidence 467888999888877777788888883 3333333 345667899999999764444556789999998732111
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec---CCeEEEEEccCCCceeeec---CC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---SSSFTIWDVAQGLGTPIRR---GF 254 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~g~v~vwd~~~~~~~~~~~---~~ 254 (445)
.....+ ...+.+++++|+|+++++...+ .+.|.+||..++....+.. ..
T Consensus 80 ------------------------~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 80 ------------------------RPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp ------------------------EEEECS-SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred ------------------------EEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 111122 2679999999999877665433 0389999998877653322 34
Q ss_pred CCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 255 GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
..+.+++++|+|+.+++... .+.|+.+|..+++...+......+..++|+|+++.++++...+..+..+++...
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 57899999999987776653 357788887766654443334457899999999988766555556666665311
Q ss_pred CCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC-----
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG----- 403 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----- 403 (445)
.... ..........+.++..+..++++++|+++++...+ +.|.+||.+ ++.+. .+..+.
T Consensus 215 g~~~----~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~------~~v~~~d~~-g~~~~-----~~~~~~~~~g~ 278 (333)
T 2dg1_A 215 GVTI----QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------GRVLVFNKR-GYPIG-----QILIPGRDEGH 278 (333)
T ss_dssp SSSE----EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------TEEEEECTT-SCEEE-----EEECTTGGGTC
T ss_pred CcCc----ccccceEEEecCCCCCCCceEECCCCCEEEEEcCC------CEEEEECCC-CCEEE-----EEEcCCCcccc
Confidence 0000 00000001112223357789999999987776555 789999985 44331 233222
Q ss_pred -CCCCceeEeecCCC
Q 013338 404 -DNPKPVAFSFHDKF 417 (445)
Q Consensus 404 -~~v~~v~~spdg~~ 417 (445)
..+.+++|+|||+.
T Consensus 279 ~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQ 293 (333)
T ss_dssp SCBCCEEEECTTSCE
T ss_pred ccCcceEEECCCCCE
Confidence 26889999998753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-15 Score=134.62 Aligned_cols=235 Identities=11% Similarity=0.087 Sum_probs=157.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-----CCCCCeeEEEE-CcCCCcEEEEec--CCcEEEEc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEW-RPNGGRSLSVGC--KGGICIWA 172 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~l~~-spd~~~l~~~~~--dg~i~vw~ 172 (445)
...+++++++|+++++...++.|.+|+.+ ++....+.. ++...+..+++ .++ +.++++.. ++.|.+|+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEEC
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEEEEC
Confidence 57899999999988888889999999964 444443321 23457899999 466 56666553 78999999
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR- 251 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~- 251 (445)
.. ... ...+.......+.+++++|+|+++++...+ +.|.+||........+.
T Consensus 107 ~~-g~~-------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~g~~~~~~~~ 159 (286)
T 1q7f_A 107 QY-GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKV-MRVIIFDQNGNVLHKFGC 159 (286)
T ss_dssp TT-SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTT-TEEEEECTTSCEEEEEEC
T ss_pred CC-CcE-------------------------EEEecCccCCCceEEEEeCCCCEEEEECCC-CEEEEEcCCCCEEEEeCC
Confidence 43 211 111221122568899999999866665556 69999996543222222
Q ss_pred -cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCC--CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 252 -RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 252 -~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.+...+..++++|+|+.+++...++.|++||........+... ...+..++++++|+++++.......+.. ++.
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~---~~~ 236 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI---FTQ 236 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE---ECT
T ss_pred CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEE---ECC
Confidence 2345789999999999888878899999999865443333322 3578899999999876654322113443 332
Q ss_pred CCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.+.+..+..+. .+.+++++|+|+++++ +.+ ++|++|++..
T Consensus 237 -----------~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~------~~v~v~~~~~ 280 (286)
T 1q7f_A 237 -----------DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD------YRLYIYRYVQ 280 (286)
T ss_dssp -----------TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT------TEEEEEECSC
T ss_pred -----------CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC------CeEEEEEccc
Confidence 223333333332 4678999999987666 555 8999999864
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-16 Score=142.34 Aligned_cols=241 Identities=13% Similarity=0.161 Sum_probs=154.1
Q ss_pred CCeeEEEEccCCCEEEEEE---------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC---Cc
Q 013338 100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GG 167 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---g~ 167 (445)
..+..+++ ||+++|+.. .++.|.+|+++. ++. ..+ ..+..++|||||+.|++++.+ +.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~--~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN--NAR-RFI-----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT--CCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC--Cce-EEc-----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 34677888 999988753 255677787753 433 222 457899999999888887754 34
Q ss_pred --EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec------------
Q 013338 168 --ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------ 233 (445)
Q Consensus 168 --i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------ 233 (445)
|.+|++..+ .. . .+..+. . +..++|+|||+.|++++.+
T Consensus 85 ~~l~~~~~~~g-~~------------------------~-~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 85 SEIWVADLETL-SS------------------------K-KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp EEEEEEETTTT-EE------------------------E-EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ceEEEEECCCC-ce------------------------E-EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 666666521 11 1 111222 3 8899999999999988743
Q ss_pred --------------CCeEEEEEccCCCc-eeeecCCCCeeEEEEcCCCCEEEEEecCC---------eEEEEeCCCCCcc
Q 013338 234 --------------SSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDG---------TFYLWETNTWTSE 289 (445)
Q Consensus 234 --------------~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~dg---------~v~iwd~~~~~~~ 289 (445)
...|.+||+.+++. ..+.. . .+..++|+|+| .++++..++ .|+++| +++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~ 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE
Confidence 13799999988876 55544 4 88899999999 777775542 455556 55555
Q ss_pred cccCCCCCeeEEEECCCCCeEEEEEcCCc----eEEEEEeccCCCCccccccCccccccccccCCC-ccce-EEeCCCCC
Q 013338 290 PWSSTSGFVTGATWDPEGRMILLAFAGSL----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGE 363 (445)
Q Consensus 290 ~~~~~~~~v~~~~~sp~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~sp~g~ 363 (445)
.+..+ ..+..+ +|+|++|++...... ....+.+++ ..+.......+. .+.. +.|+ ||
T Consensus 212 ~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d------------~~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 212 KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD------------GKEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC------------SSCEEESSTTCCSEEEEEEEET-TE-
T ss_pred EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC------------CCceEeccccCCcccCCccEEc-Cc-
Confidence 55444 444444 999999887654321 011222222 111112223333 5775 8999 88
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
++++++.+ +.++|| +.+++.. .+..+...|.+++|+|
T Consensus 275 ~~~~~~~~------~~~~l~-~~~g~~~------~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 275 VYFTLFEE------GSVNLY-IWDGEIK------PIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEEEEET------TEEEEE-EESSSEE------EEECSSSEEEEEEESS
T ss_pred EEEEEecC------CcEEEE-EcCCceE------EEecCCCeEEeeeeeC
Confidence 88888777 789999 8755432 2333466788889988
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-15 Score=148.71 Aligned_cols=246 Identities=9% Similarity=0.054 Sum_probs=161.3
Q ss_pred CeeEEEEccCCCEEEEEECCC-----eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc--------
Q 013338 101 DLQGVSWHQHKHIVAFISGST-----QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-------- 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~-------- 167 (445)
.+..++|||||++||+++.++ .|++||++ +++....... + ..+.+++|+|||+.|+++..++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~--tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD--GAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT--TTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC--CCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 588999999999999876433 89999985 3554433221 2 23678999999999999887754
Q ss_pred --------EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe-----cC
Q 013338 168 --------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----ES 234 (445)
Q Consensus 168 --------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~ 234 (445)
|++|++.+...... ++.....+ ...+..+.|||||++|+..+. +
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~---------------------~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~- 258 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDI---------------------LCAEFPDE-PKWMGGAELSDDGRYVLLSIREGCDPV- 258 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECSSSSC-
T ss_pred cccCCCCEEEEEECCCCcccce---------------------EEeccCCC-CeEEEEEEEcCCCCEEEEEEEccCCCc-
Confidence 88898873321101 11111222 245788999999999998875 4
Q ss_pred CeEEEEEccC------C--CceeeecCCCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCc---ccccCCCC--C
Q 013338 235 SSFTIWDVAQ------G--LGTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS---EPWSSTSG--F 297 (445)
Q Consensus 235 g~v~vwd~~~------~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~---~~~~~~~~--~ 297 (445)
..|++||+.+ + ....+..+...+.. .|+|+|+.|+..+.. +.|.+||+.+++. ..+..+.. .
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 4899999987 5 34556666555554 588999988766653 3699999988753 44444443 5
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEE-cCCCcc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY-KGGDDI 375 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s-~d~~d~ 375 (445)
+..++|++++.++++... ++... +.+++.. +++.+..+..+. .+..++++|+++.++... .....
T Consensus 338 ~~~~~~~~~~~lv~~~~~-~g~~~-l~~~~~~----------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P- 404 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH-DVKNT-LQLHDLA----------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP- 404 (710)
T ss_dssp EEEEEEETTTEEEEEEEE-TTEEE-EEEEETT----------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCC-
T ss_pred EEEEEEEcCCEEEEEEEE-CCEEE-EEEEECC----------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCC-
Confidence 788999876666554433 33222 2222210 222334444444 688899999998766543 22222
Q ss_pred cceEEEEEEccCCC
Q 013338 376 YKGLIAIYDARRTP 389 (445)
Q Consensus 376 ~d~~i~vwd~~~~~ 389 (445)
++|++||+.+++
T Consensus 405 --~~i~~~d~~tg~ 416 (710)
T 2xdw_A 405 --GIIYHCDLTKEE 416 (710)
T ss_dssp --CEEEEEETTSSS
T ss_pred --CEEEEEECCCCc
Confidence 789999998876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=151.86 Aligned_cols=259 Identities=11% Similarity=0.057 Sum_probs=165.3
Q ss_pred cCCCEEEEEECCC---eEEEEEccCCCCcceeEE-----ecCCCCCeeEEEECcCCCcEEEEecC-C----cEEEEccCC
Q 013338 109 QHKHIVAFISGST---QVIVRDYEDSEGKDACIL-----TSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPSY 175 (445)
Q Consensus 109 p~g~~la~~~~d~---~i~iw~~~~~~~~~~~~~-----~~~~~~~v~~l~~spd~~~l~~~~~d-g----~i~vw~~~~ 175 (445)
|+|++++....++ .-.||..+...+.....+ ..+|...+..++|||||++++++..+ | .|++||+..
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8999888765332 124566543334432221 12344468899999999888877654 2 899999983
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe----------------EEE
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS----------------FTI 239 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~----------------v~v 239 (445)
+.... ..+. + ..+..++|+|||+.|++++.+. . |++
T Consensus 161 g~~~~------------------------~~~~-~--~~~~~~~wspDg~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 161 AKELP------------------------DVLE-R--VKFSCMAWTHDGKGMFYNAYPQ-QDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp TEEEE------------------------EEEE-E--ECSCCEEECTTSSEEEEEECCC-CSSCCSSSCCCCCCCCEEEE
T ss_pred CCCCc------------------------cccc-C--cccceEEEEeCCCEEEEEEECC-ccccccccccccCCCCEEEE
Confidence 32111 0111 1 2367899999999999998773 4 999
Q ss_pred EEccCCCce--eeec---CCCCeeEEEEcCCCCEEEEEec-----CCeEEEEeCCC------C--CcccccCCCCCeeEE
Q 013338 240 WDVAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNT------W--TSEPWSSTSGFVTGA 301 (445)
Q Consensus 240 wd~~~~~~~--~~~~---~~~~v~~~~~sp~g~~l~~~~~-----dg~v~iwd~~~------~--~~~~~~~~~~~v~~~ 301 (445)
|++.+++.. .+.. +...+..+.|+|||++|+.++. +..|++||+.+ + ....+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 999887632 2222 2445789999999999987765 56899999986 4 34455555555544
Q ss_pred EECCCCCeEEEEEcCCc---eEEEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcc
Q 013338 302 TWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDI 375 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~ 375 (445)
.|+|+|+.|++....+. .+..+++... .......+..+. .+..++|++++.++++...++.
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-- 358 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDP-----------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-- 358 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE--
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE--
Confidence 58899998887765433 3444443211 000112333332 4778899877777777776632
Q ss_pred cceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCC
Q 013338 376 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~ 416 (445)
..|++|++.+++.. ..+..+...+..++++|+++
T Consensus 359 --~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 359 --NTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp --EEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCS
T ss_pred --EEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCC
Confidence 35777887666543 24445566677888888775
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-16 Score=146.16 Aligned_cols=238 Identities=9% Similarity=0.036 Sum_probs=149.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeE-------------------EEECcCCCcEEEEe-
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKV-------------------LEWRPNGGRSLSVG- 163 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-------------------l~~spd~~~l~~~~- 163 (445)
.+.|+|||++|++++.++.+.+|++.. ++..... ..+...... +.|+|+++.+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~--~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLET--LEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTT--CCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCC--CCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 478999999999999999999999853 4433332 223332222 34677766555442
Q ss_pred ----cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecC----
Q 013338 164 ----CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYES---- 234 (445)
Q Consensus 164 ----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~---- 234 (445)
.+..|.+||+..+.. . . +..+ ...+..+.|+| +++.|++.+.+.
T Consensus 162 ~~~~~~~~l~~~d~~~g~~-~----------------------~---~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGEL-E----------------------V---IHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp HHTCCCEEEEEEETTTCCE-E----------------------E---EEEE-SSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred ccCCCcceEEEEECCCCcE-E----------------------e---eccC-CcccccceECCCCCCEEEEEecCCCCCC
Confidence 345777888763211 1 1 1122 25788999999 888888776532
Q ss_pred -CeEEEEEccCCCceeeecCC--CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCcccccCCCCCeeEEEECC-
Q 013338 235 -SSFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWSSTSGFVTGATWDP- 305 (445)
Q Consensus 235 -g~v~vwd~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp- 305 (445)
..|.+||+.+++...+..+. ..+..++|+|+|++|+.++.+ +.|++||+.+++...+..... .. +.|+|
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~ 292 (396)
T 3c5m_A 215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNF 292 (396)
T ss_dssp SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECS
T ss_pred CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCC
Confidence 25888998877665555432 357889999999988777554 459999999887654433222 33 89999
Q ss_pred CCCeEEEEEc---------------CCceEEEEEeccCCCCccccccCccccccccccCCC------------ccceEEe
Q 013338 306 EGRMILLAFA---------------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------------GIEKIAW 358 (445)
Q Consensus 306 ~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~ 358 (445)
+|++++++.. .+..++.+++.. .....+..+. .+..++|
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--------------KSAQKLCKHSTSWDVLDGDRQITHPHPSF 358 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTT--------------TBCCEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEeccc--------------CceEEccCCCCccccccccccCCCCCceE
Confidence 9998886532 123344444321 1112222222 2567899
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+|||++|++++..... ..|+++++.+++.
T Consensus 359 s~dg~~l~~~s~~~~~---~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 359 TPNDDGVLFTSDFEGV---PAIYIADVPESYK 387 (396)
T ss_dssp CTTSSEEEEEECTTSS---CEEEEEECCTTCC
T ss_pred ccCCCeEEEEecCCCC---ceEEEEEEccccc
Confidence 9999999988764322 3566666665543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-14 Score=139.69 Aligned_cols=310 Identities=10% Similarity=-0.029 Sum_probs=194.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEEC----cCCCcEEEEecC-CcEEEEcc
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWR----PNGGRSLSVGCK-GGICIWAP 173 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~s----pd~~~l~~~~~d-g~i~vw~~ 173 (445)
+..+..+.|||||+++++++.++.|.+||+...+++....+.. ......++|+ |||++++++... +.+.++|.
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 3467899999999999999999999999985334555555543 3457899999 698888877764 99999997
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--ee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IR 251 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~ 251 (445)
.+......+...... ......|....+..+..++++..+++...+.|.|.++|........ ..
T Consensus 274 ~t~~~~~~i~~~~~~---------------~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 274 ETLEPKKIQSTRGMT---------------YDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp TTCCEEEEEECCEEC---------------TTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred CCCcEEEEEeccccc---------------cccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 744333332221000 0000012223688899999877766666666899999987654322 22
Q ss_pred cCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCccccc------CCCCCeeEEEECCCCCeEEE-EEcCCceEEEE
Q 013338 252 RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILL-AFAGSLTLGSI 323 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~-~~~~~~~~~~~ 323 (445)
.......++.|+|+|++|+++. .++.|.++|+.+++..... .|.+.-..+ ++|++..+.+ +..++..+..+
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 3345677899999999987665 5789999999998863221 232222122 5887555554 33344566666
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC-CcccceEEEEEEccCCCe-----e-eeee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPL-----I-SLSL 395 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~-~d~~d~~i~vwd~~~~~~-----~-~~~~ 395 (445)
........ ...++.++++.... .-..+..+|++++|.+....+ +....++|.|+|+.+.+. . ...+
T Consensus 418 d~~~~~~~------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~ 491 (567)
T 1qks_A 418 GTDPEGHP------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 491 (567)
T ss_dssp ECCTTTCT------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEEC
T ss_pred cCCCCCCc------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEec
Confidence 64321100 01244556665544 445678999999999876321 101126899999987611 1 1111
Q ss_pred eee---eeCCCCCCCceeEeecCCCCCCCeEEEEe----cCeeeEeee
Q 013338 396 IGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYP 436 (445)
Q Consensus 396 ~~~---~~~~~~~v~~v~~spdg~~~~~~~l~~~~----~~G~v~~~~ 436 (445)
+.. +......+..+.|+|+|++ ++...| .++.|.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~G~~----~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 492 IAEWAGITEGQPRVVQGEFNKDGTE----VWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHHHTCCSSCCEEEEEEECTTSSE----EEEEEECCTTSCCEEEEEE
T ss_pred cccccccCCCCcceEeeeECCCCCE----EEEEeecCCCCCCcEEEEE
Confidence 111 1112346788999999987 333456 368888865
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-15 Score=134.71 Aligned_cols=282 Identities=12% Similarity=0.094 Sum_probs=168.4
Q ss_pred CCCEEEEEE------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEEcc
Q 013338 110 HKHIVAFIS------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAP 173 (445)
Q Consensus 110 ~g~~la~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw~~ 173 (445)
+++++++.. .|+.|.+||.. +++....+.. +..+ .++|+||+++++++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~--t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYT--NGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETT--TCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECC--CCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555665543 36799999974 4665555532 3333 8999999888887763 467999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeeccc--CCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceee
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--NGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~ 250 (445)
.+......+... ..+ .......++++|||++|+++... .+.|.+||+.+++....
T Consensus 89 ~t~~~~~~i~~~----------------------~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 89 DKLTFEKEISLP----------------------PKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp TTCCEEEEEEEC----------------------TTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred cCCcEEEEEEcC----------------------ccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 733222221110 000 12457789999999999998763 36999999998866554
Q ss_pred -ecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCC-CCcc-------cccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 251 -RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNT-WTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 251 -~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~-~~~~-------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
....+ ...+.+.|++ ..+++.+.||.+.+|+... ++.. .+.....+ ..+.+++++..++... .++.+
T Consensus 147 ~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~v 223 (361)
T 2oiz_A 147 VTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS-YYGNV 223 (361)
T ss_dssp EGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB-TTSEE
T ss_pred EecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe-CCCeE
Confidence 43322 2335677775 6778888899999998865 4432 11111222 2334466776666543 33456
Q ss_pred EEEEeccCCCCccccccCccccccccccCC---CccceEEeCCCCCEEEEEEc-CCCc----ccceEEEEEEccCCCeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYK-GGDD----IYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~s~-d~~d----~~d~~i~vwd~~~~~~~~ 392 (445)
..+++....... ...+..... ...... .....++|+|+++.++++.. ++.+ ...+.|.+||+.+++.+
T Consensus 224 ~v~d~~~~~~~~-~~~~~~~~~--~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v- 299 (361)
T 2oiz_A 224 YSADFSGDEVKV-DGPWSLLND--EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV- 299 (361)
T ss_dssp EEEECSSSSCEE-EEEEESCCH--HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-
T ss_pred EEEEecCCCcee-cccccccCc--cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-
Confidence 666543211000 000000000 000000 12334789999988887754 2110 01158999999987765
Q ss_pred eeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 393 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 393 ~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+..+. +.+++|+|||++ |.++.. +.|.+|+.
T Consensus 300 ----~~i~~~~--p~~ia~spdg~~-----l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 300 ----ARIPGRD--ALSMTIDQQRNL-----MLTLDG-GNVNVYDI 332 (361)
T ss_dssp ----EEEECTT--CCEEEEETTTTE-----EEEECS-SCEEEEEC
T ss_pred ----EEEecCC--eeEEEECCCCCE-----EEEeCC-CeEEEEEC
Confidence 3566555 899999999986 444444 88888864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-14 Score=129.17 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=157.3
Q ss_pred CCeeEEEEccCCCEEEEEECC------------------------CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS------------------------TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN 155 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd 155 (445)
..+.+++++|+|+++++...+ +.|.+||.+ +++.......++-..+..++++|+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN--NAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT--TCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC--CCeEEeccCCCccCCceEEEECCC
Confidence 358999999999999887776 468888874 366555443345567899999999
Q ss_pred CCcEEEEecCCcEEEEccCCCC-CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEE-e
Q 013338 156 GGRSLSVGCKGGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASAS-Y 232 (445)
Q Consensus 156 ~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~ 232 (445)
|..+++...++.|++|+..... ....+.... ..+. -..+ ......++++| +++++++.+ .
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-------~~g~---------~~~~-~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSM-------QPGS---------DQNH-FCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTT-------BCCC---------STTC-CSSEEEEEECTTTCCEEEEECSS
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccC-------CCCC---------Cccc-cCCCcEEEEeCCCCeEEEEeCCC
Confidence 7744444456899999976221 111111000 0000 0112 24688999999 677666665 3
Q ss_pred cCCeEEEEEccCCCceeeecC-----------CCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc-cc--cCCCCC
Q 013338 233 ESSSFTIWDVAQGLGTPIRRG-----------FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PW--SSTSGF 297 (445)
Q Consensus 233 d~g~v~vwd~~~~~~~~~~~~-----------~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~-~~--~~~~~~ 297 (445)
+ +.|++|+. ++........ ...+..++++|+ ++.+++...++.|++||..+++.. .+ ..+...
T Consensus 165 ~-~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 165 N-SRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp C-CEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred C-CeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence 5 69999994 4544333321 134889999998 676777778899999999977763 22 345667
Q ss_pred eeEEEECCCCCeEEEEEc------CCceEEEEEeccCCCCccccccCccccccccc---cCCC-ccceEEeCCCCCEEEE
Q 013338 298 VTGATWDPEGRMILLAFA------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---TGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~v~~~~~sp~g~~l~~ 367 (445)
+..++|+| +..+...+. ....+..+++. +++.+..+ ..+. .+.+++++|+|..+++
T Consensus 243 ~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~-------------~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva 308 (329)
T 3fvz_A 243 VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS-------------SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG 308 (329)
T ss_dssp EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETT-------------TCCEEEEECCSSSCCSSEEEEEECTTSEEEEE
T ss_pred cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC-------------CCeEEEEEcCCCCccCCeeEEEECCCCCEEEE
Confidence 88999999 433332210 11123333321 23333333 2333 6899999999966665
Q ss_pred EEcCCCcccceEEEEEEccC
Q 013338 368 SYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~ 387 (445)
...+ ++|++|++..
T Consensus 309 d~~~------~~I~~~~~~~ 322 (329)
T 3fvz_A 309 DAHT------NTVWKFTLTE 322 (329)
T ss_dssp ESSS------CCEEEEEEEE
T ss_pred ECCC------CEEEEEeCCc
Confidence 5444 8999999864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-13 Score=134.02 Aligned_cols=261 Identities=12% Similarity=0.067 Sum_probs=173.9
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccC--CCCCcccccccc
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS--YPGNAASVRSGA 186 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~ 186 (445)
|.+.++++...++.|.++|.. +++.+..+. ....+..+.|+|||+++++++.++.|.+||+. +...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~--t~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-------- 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS--TYEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-------- 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT--TCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--------
T ss_pred CCceEEEEeCCCCeEEEEECC--CCeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--------
Confidence 445667777789999999985 466665554 34467899999999999988888999999984 2221
Q ss_pred ccccccccCCCCCceEEEEeecccCCCceeEEEEC----CCCCeEEEEEecCCeEEEEEccCCCceeeecC---------
Q 013338 187 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRG--------- 253 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~--------- 253 (445)
+..+... .....++|+ |||+++++++...++|.++|..+.+......-
T Consensus 233 -----------------v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 233 -----------------VAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp -----------------EEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred -----------------eEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence 2223322 356799999 69999999988778999999988876543221
Q ss_pred ---CCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 254 ---FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 254 ---~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
...+..+..++++..+ +....+|.|.++|....+... ..........+.|+|++++++++...+..+..++...
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t 373 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 373 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence 1267788899886655 455567999999998764311 1233456778999999999998887777777777642
Q ss_pred CCCCccccccCccccccccccC-CC---ccceEE-eCCCCCEEEEEEcCCCcccceEEEEEEccCCCe--eeeeeeeeee
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTG-SQ---GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRTPL--ISLSLIGFIR 400 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~-~~---~v~~~~-~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~--~~~~~~~~~~ 400 (445)
. +.+..+.. .. .-..+. ++|++..+.+.+.-++ +.|.++|..+++. .....++.+.
T Consensus 374 ~-------------kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 374 G-------------KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp T-------------EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred C-------------cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEe
Confidence 2 22222211 11 112333 5888655554443222 7899999986321 1122345555
Q ss_pred CCCCCCCceeEeecCCC
Q 013338 401 GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~ 417 (445)
.....-..+..+|++++
T Consensus 437 ~~g~g~~~i~~~p~~~~ 453 (567)
T 1qks_A 437 ALGGGSLFIKTHPNSQY 453 (567)
T ss_dssp CSCSCCCCEECCTTCSE
T ss_pred cCCCCCEEEEeCCCCCe
Confidence 54444456788999885
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=144.07 Aligned_cols=246 Identities=10% Similarity=-0.016 Sum_probs=157.9
Q ss_pred CeeEEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCC--eeEEEECcCCCcEEEEecCCc------
Q 013338 101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRD--VKVLEWRPNGGRSLSVGCKGG------ 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~--v~~l~~spd~~~l~~~~~dg~------ 167 (445)
.+.+++|||||++||.+. .+..|++||++. ++.... .+... ...++|+|||+.|++++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t--g~~~~~---~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS--GEWSKV---DVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT--CCBCSS---CCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC--CCCcCC---cccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 588999999999999543 346899999964 443201 11122 268999999999999888755
Q ss_pred -------EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-C--eE
Q 013338 168 -------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-S--SF 237 (445)
Q Consensus 168 -------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-g--~v 237 (445)
|++|++.+..... .++.....+. ..+..+.|||||++|++++.++ + .|
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~---------------------~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKD---------------------TVVHERTGDP-TTFLQSDLSRDGKYLFVYILRGWSENDV 254 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGC---------------------EEEECCCCCT-TCEEEEEECTTSCCEEEEEEETTTEEEE
T ss_pred cCCCCCEEEEEECCCCchhc---------------------eEEEecCCCC-EEEEEEEECCCCCEEEEEEeCCCCceEE
Confidence 9999987432211 1121222232 5788999999999999888762 1 67
Q ss_pred EEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe---cCCeEEEEeCCCCCc---ccccCC--CCCeeEEEECCCCCe
Q 013338 238 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS---EPWSST--SGFVTGATWDPEGRM 309 (445)
Q Consensus 238 ~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---~dg~v~iwd~~~~~~---~~~~~~--~~~v~~~~~sp~~~~ 309 (445)
++|+..+++...+..+...+....| ++|++++.+. .++.|++||+.+++. ..+..+ ...+..++|+ ++.+
T Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 255 YWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp EEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 7777666667777777667777777 5666434443 257899999988763 334333 4457888888 5555
Q ss_pred EEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEc-CCCcccceEEEEEEcc
Q 013338 310 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDAR 386 (445)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd~~ 386 (445)
+++. ..++....+.+. . .+.....+..+ . .+..++++|+++.|+.... ... +++|++||+.
T Consensus 333 v~~~-~~dg~~~l~~~~-~-----------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~---P~~v~~~d~~ 396 (695)
T 2bkl_A 333 SLEY-LKDATSEVRVAT-L-----------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT---PRQIYKTSVS 396 (695)
T ss_dssp EEEE-EETTEEEEEEEE-T-----------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE---EEEEEEEETT
T ss_pred EEEE-EECCEEEEEEEe-C-----------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC---CCEEEEEECC
Confidence 5443 333333333221 1 22223334433 2 6788999999987775432 222 2789999998
Q ss_pred CCCee
Q 013338 387 RTPLI 391 (445)
Q Consensus 387 ~~~~~ 391 (445)
+++..
T Consensus 397 ~g~~~ 401 (695)
T 2bkl_A 397 TGKSE 401 (695)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 87643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-14 Score=127.64 Aligned_cols=238 Identities=11% Similarity=0.010 Sum_probs=156.9
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
...+++|+|+|+ +++++..++.|..|+.+. + ...+ ..+...+.+++++|+|..+++...++.|.+|+...+..
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~- 102 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDG--Q--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW- 102 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTS--C--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCC--C--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-
Confidence 357899999998 777778899999999753 3 3333 34667799999999976444444458999999863321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEE----Ee------------cCCeEEEEEcc
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA----SY------------ESSSFTIWDVA 243 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~------------d~g~v~vwd~~ 243 (445)
..+ ...........+..++++|+|+++++. .. ..+.|..++..
T Consensus 103 ~~~---------------------~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 103 ESI---------------------ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEE---------------------ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEE---------------------eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 111 011111112457789999999987763 21 11356666655
Q ss_pred CCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCC-CCCc----ccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 244 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~-~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
++...+..+...+..++|+|+|+.+++.+.++.|++||+. +++. ..+..+...+.+++++++|++.++. ..
T Consensus 162 -g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 -GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp -SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred -CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 5555555666778999999999999777778999999987 4443 1222344556789999999866644 23
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCCccceEEe-CCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.+..++ . .++.+..+..+..+++++| +|+++.|++++.+ .+.-++.+++++
T Consensus 238 ~v~~~~---~-----------~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-------~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLT---P-----------DGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-------EFWSIETNVRGL 289 (296)
T ss_dssp EEEEEC---T-----------TSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-------EEEEEECSCCBC
T ss_pred eEEEEC---C-----------CCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-------eEEEEEcccccc
Confidence 344333 2 3333444444434889999 6899999888764 455666665544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-15 Score=147.63 Aligned_cols=261 Identities=8% Similarity=0.033 Sum_probs=161.8
Q ss_pred ccCCCEEEEEECCC---eEEEEEccCCCCcceeEEe-----cCCCCCeeEEEECcCCCcEEEEec-----CCcEEEEccC
Q 013338 108 HQHKHIVAFISGST---QVIVRDYEDSEGKDACILT-----SDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS 174 (445)
Q Consensus 108 sp~g~~la~~~~d~---~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~l~~spd~~~l~~~~~-----dg~i~vw~~~ 174 (445)
+|+|++++....++ .-.||..+...+.....+. .+|...+.+++|||||++|+.+.. +..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 38999998877544 3556766543444333221 135557899999999888876543 2579999998
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe-------------EEEEE
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-------------FTIWD 241 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~-------------v~vwd 241 (445)
.+..... .. +. ......++|+|||+.|++++.+. . |++|+
T Consensus 156 tg~~~~~--~~---------------------~~---~~~~~~~~wspDg~~l~~~~~d~-~~~~~~~~~~~~~~v~~~~ 208 (695)
T 2bkl_A 156 SGEWSKV--DV---------------------IE---GGKYATPKWTPDSKGFYYEWLPT-DPSIKVDERPGYTTIRYHT 208 (695)
T ss_dssp TCCBCSS--CC---------------------BS---CCTTCCCEECTTSSEEEEEECCC-CTTSCGGGGGGGCEEEEEE
T ss_pred CCCCcCC--cc---------------------cC---cccccceEEecCCCEEEEEEecC-CCCCccccCCCCCEEEEEE
Confidence 5432200 00 11 01226789999999999998873 4 99999
Q ss_pred ccCCCc--eeeec---CCCCeeEEEEcCCCCEEEEEecCC----eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEE
Q 013338 242 VAQGLG--TPIRR---GFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 242 ~~~~~~--~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 312 (445)
+.++.. ..+.. +...+..+.|+|||++|+.++.++ .|++||..+++...+..+...+....+ ++|. +++
T Consensus 209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~ 286 (695)
T 2bkl_A 209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYV 286 (695)
T ss_dssp TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEE
T ss_pred CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEE
Confidence 988763 22322 335788999999999998877666 788887776666666666666666667 6777 665
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccC-C-C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc-CC
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-S-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RT 388 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~-~~ 388 (445)
..+.+...+.+..++.... .......+.. + . .+..++|+ ++.++++...+ +..+||.+. .+
T Consensus 287 ~s~~~~~~~~l~~~d~~~~--------~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~~l~~~~~~g 351 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKP--------ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD------ATSEVRVATLKG 351 (695)
T ss_dssp EECTTCTTCEEEEEBTTBC--------SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET------TEEEEEEEETTC
T ss_pred EECCCCCCCEEEEEeCCCC--------CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC------CEEEEEEEeCCC
Confidence 5543222233333332110 0000122222 2 2 57888888 67777777776 666666554 23
Q ss_pred CeeeeeeeeeeeCC-CCCCCceeEeecCCC
Q 013338 389 PLISLSLIGFIRGP-GDNPKPVAFSFHDKF 417 (445)
Q Consensus 389 ~~~~~~~~~~~~~~-~~~v~~v~~spdg~~ 417 (445)
+.. ..+..+ ...+..++++|+++.
T Consensus 352 ~~~-----~~l~~~~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 352 KPV-----RTVQLPGVGAASNLMGLEDLDD 376 (695)
T ss_dssp CEE-----EECCCSSSSEECCCBSCTTCSE
T ss_pred Cee-----EEecCCCCeEEEEeecCCCCCE
Confidence 322 233333 456778889998753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-14 Score=130.00 Aligned_cols=204 Identities=13% Similarity=0.040 Sum_probs=133.5
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC--ceeee---------cCCCCeeEEEEcC-CCCEEEEEe-cCCeEE
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIR---------RGFGGLSILKWSP-TGDYFFAAK-FDGTFY 279 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~--~~~~~---------~~~~~v~~~~~sp-~g~~l~~~~-~dg~v~ 279 (445)
.....++++|+|+++++...+ +.|++||..... ...+. .+...+..++++| +++.+++.+ .++.|+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~-~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVAL-HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTT-TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CCceEEEECCCCCEEEEECCC-CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 578899999999976666656 699999986552 22221 2234689999999 788888776 689999
Q ss_pred EEeCCCCCcccccC----------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc-
Q 013338 280 LWETNTWTSEPWSS----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT- 348 (445)
Q Consensus 280 iwd~~~~~~~~~~~----------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 348 (445)
+||........+.. +-.....++++|++..|+++......+..++.. +++.+..+.
T Consensus 170 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~-------------~G~~~~~~~~ 236 (329)
T 3fvz_A 170 QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD-------------TKEFVREIKH 236 (329)
T ss_dssp EECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT-------------TCCEEEEECC
T ss_pred EEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC-------------CCcEEEEEec
Confidence 99954332232221 123478999999966666666666666666642 133333332
Q ss_pred -CCC-ccceEEeCCCCCEEEEEEcCC-CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE
Q 013338 349 -GSQ-GIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 425 (445)
Q Consensus 349 -~~~-~v~~~~~sp~g~~l~~~s~d~-~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~ 425 (445)
.+. .+..++|+| +..+++.+... .+..+..|++|++.+++++.. +....++...+.+++++|+|. ++..
T Consensus 237 ~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~--~~~~~~~~~~p~~ia~~~dG~-----lyva 308 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV--FKPVRKHFDMPHDIVASEDGT-----VYIG 308 (329)
T ss_dssp TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE--ECCSSSCCSSEEEEEECTTSE-----EEEE
T ss_pred cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE--EcCCCCccCCeeEEEECCCCC-----EEEE
Confidence 233 678899999 43333322110 001125899999998876631 111135666788999999985 5777
Q ss_pred EecCeeeEeeeee
Q 013338 426 CWSSGFCCTYPLI 438 (445)
Q Consensus 426 ~~~~G~v~~~~~~ 438 (445)
...+++|..|++.
T Consensus 309 d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 309 DAHTNTVWKFTLT 321 (329)
T ss_dssp ESSSCCEEEEEEE
T ss_pred ECCCCEEEEEeCC
Confidence 7889999998875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-14 Score=129.73 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=137.0
Q ss_pred CCeeEEEEccCCCEEEEEECC---CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-----------
Q 013338 100 VDLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----------- 165 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----------- 165 (445)
..+..++|||||++||+++.+ +...||.++..+++..... . +.. +..++|+|||+.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 357889999999999988754 4544444433345443333 2 233 9999999999888887642
Q ss_pred ----------------CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE
Q 013338 166 ----------------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS 229 (445)
Q Consensus 166 ----------------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 229 (445)
..|.+|++..+. ....+.. . .+..++|+||| ++++
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~-------------------------~~~~l~~--~-~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEE-------------------------VIEEFEK--P-RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTE-------------------------EEEEEEE--E-TTCEEEEETTE-EEEE
T ss_pred ccceeecCcccccCccceEEEEECCCCe-------------------------EEeeecC--C-CcccccCCCCe-EEEE
Confidence 456677765211 1111222 1 57789999999 6666
Q ss_pred EEecC-----C-eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC--------CeEEEEeCCCCCccccc-CC
Q 013338 230 ASYES-----S-SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPWS-ST 294 (445)
Q Consensus 230 ~~~d~-----g-~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~~~~~~~~~-~~ 294 (445)
+..+. . ...+|.+.+++...+..+ ..+..+ +|+|++|+.++.+ ..|++|| +++...+. .+
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred EecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 65431 1 334444445555555554 445444 9999999877644 4788888 55554443 45
Q ss_pred CCCeeE-EEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTG-ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~-~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
...+.. +.|+ ++ +++++.. ++....+ +.+ ++......+...|.+++|+| .++++++.++
T Consensus 262 ~~~~~~~~~~s-dg-~~~~~~~-~~~~~l~-~~~-------------g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~- 321 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFTLFE-EGSVNLY-IWD-------------GEIKPIAKGRHWIMGFDVDE--IVVYLKETAT- 321 (347)
T ss_dssp CSEEEEEEEET-TE-EEEEEEE-TTEEEEE-EES-------------SSEEEEECSSSEEEEEEESS--SEEEEEECSS-
T ss_pred CcccCCccEEc-Cc-EEEEEec-CCcEEEE-EcC-------------CceEEEecCCCeEEeeeeeC--cEEEEEcCCC-
Confidence 667776 8999 88 6555433 3344444 321 11111122222689999999 6777766652
Q ss_pred cccceEEEEEEccCCC
Q 013338 374 DIYKGLIAIYDARRTP 389 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~ 389 (445)
....||.++ ++
T Consensus 322 ----~~~~l~~~~-g~ 332 (347)
T 2gop_A 322 ----RLRELFTWD-GE 332 (347)
T ss_dssp ----SCCEEEEES-SS
T ss_pred ----ChHHheEeC-Cc
Confidence 223566665 44
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=121.21 Aligned_cols=237 Identities=9% Similarity=0.015 Sum_probs=154.7
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
...+++++++|++++ +...++.|.+|+... .. .......+...+.++++++++. ++++..++.|.+|+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS--TG-TTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC--cc-cceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-
Confidence 577999999999776 446788999998632 22 2222223345688999999966 55555588999999762211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~ 258 (445)
.. +.......+..++++++|+.+++...+ +.|.+|+..+....... .....+.
T Consensus 100 ~~-------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~ 153 (270)
T 1rwi_B 100 TV-------------------------LPFDGLNYPEGLAVDTQGAVYVADRGN-NRVVKLAAGSKTQTVLPFTGLNDPD 153 (270)
T ss_dssp EE-------------------------CCCCSCSSEEEEEECTTCCEEEEEGGG-TEEEEECTTCCSCEECCCCSCCSCC
T ss_pred ee-------------------------eecCCcCCCcceEECCCCCEEEEECCC-CEEEEEECCCceeEeeccccCCCce
Confidence 11 110112468899999999866655556 69999976555443222 2235688
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++++++|+.+++...++.|.+||..+....... .....+.+++++++|..++ +......+..++...
T Consensus 154 ~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~---------- 222 (270)
T 1rwi_B 154 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGS---------- 222 (270)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTC----------
T ss_pred eEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCC----------
Confidence 9999999997777777889999999877653322 2336788999999995544 544444455544311
Q ss_pred Ccccccccccc-CC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 338 PVDLPDIVSLT-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 338 ~~~~~~~~~~~-~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
....... .+ ..+.+++++++|+.+++...+ +.|+++++...+
T Consensus 223 ----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~~~ 266 (270)
T 1rwi_B 223 ----TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLEHH 266 (270)
T ss_dssp ----SCCEECCCCSCSCEEEEEECTTCCEEEEEGGG------TEEEEECCCGGG
T ss_pred ----CcceeeccCCCCCceeEEECCCCCEEEEECCC------CEEEEEcCCCcc
Confidence 1111111 22 268899999999866665555 899999987644
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-13 Score=122.26 Aligned_cols=241 Identities=9% Similarity=0.020 Sum_probs=153.6
Q ss_pred CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE-
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW- 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 220 (445)
++-..+.++++++++..+++...++.|.+|+.. ......+... ....++ ...+..+++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~-------------------~~~~~~-~~~p~~i~~~ 85 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC-------------------GKRDSQ-LLYPNRVAVV 85 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB-------------------SSSTTC-BSSEEEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc-------------------CCCccc-ccCceEEEEE
Confidence 345678999999996544444567999999976 2211111000 000112 246789999
Q ss_pred CCCCCeEEEEEe-cCCeEEEEEccCCCceeeec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--CCC
Q 013338 221 GPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STS 295 (445)
Q Consensus 221 sp~~~~l~~~~~-d~g~v~vwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~ 295 (445)
.++++++++... + +.|.+|| .+++...... +...+.+++++|+|+.+++...++.|++||........+. .+.
T Consensus 86 ~~~g~l~v~~~~~~-~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 86 RNSGDIIVTERSPT-HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHL 163 (286)
T ss_dssp TTTTEEEEEECGGG-CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTC
T ss_pred cCCCeEEEEcCCCC-CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCcc
Confidence 577766665533 6 5999999 4454443332 3457899999999998888778899999997644333332 344
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC---CccceEEeCCCCCEEEEEEcCC
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
..+..++++++|++++ +...+..+..++. ....+..+..+ ..+..++++++|+++++...+
T Consensus 164 ~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~--------------~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~- 227 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFI-SDNRAHCVKVFNY--------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN- 227 (286)
T ss_dssp SSEEEEEECSSSEEEE-EEGGGTEEEEEET--------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-
T ss_pred CCcEEEEECCCCCEEE-EECCCCEEEEEcC--------------CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC-
Confidence 5689999999998555 4333445555543 22222333222 267899999999887776554
Q ss_pred Ccccce-EEEEEEccCCCeeeeeeeeeeeCC--CCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 373 DDIYKG-LIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 373 ~d~~d~-~i~vwd~~~~~~~~~~~~~~~~~~--~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ .|.+||.. ++.+ ..+..+ ...+.+++|+|+|++ +... .+++|.+|.+.
T Consensus 228 -----~~~i~~~~~~-g~~~-----~~~~~~~~~~~~~~i~~~~~g~l-----~vs~-~~~~v~v~~~~ 279 (286)
T 1q7f_A 228 -----NFNLTIFTQD-GQLI-----SALESKVKHAQCFDVALMDDGSV-----VLAS-KDYRLYIYRYV 279 (286)
T ss_dssp -----SCEEEEECTT-SCEE-----EEEEESSCCSCEEEEEEETTTEE-----EEEE-TTTEEEEEECS
T ss_pred -----CEEEEEECCC-CCEE-----EEEcccCCCCcceeEEECCCCcE-----EEEC-CCCeEEEEEcc
Confidence 5 89999965 4433 123322 233668999999863 3334 58899998764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-12 Score=115.17 Aligned_cols=273 Identities=10% Similarity=0.043 Sum_probs=174.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.+++++++|+++++...++.|.+|+.+ ++........+...+.+++++++|..+++...++.|..|+.. +..
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD---GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GII 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT---CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC---CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcE
Confidence 468999999999988766567899999874 333222222345679999999996544444446889999865 111
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v 257 (445)
..+ . +... ...+..++++++|+++++...+ +.|.+||. +++..... .....+
T Consensus 90 ~~~----------------------~-~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 90 KEY----------------------T-LPNP-DSAPYGITEGPNGDIWFTEMNG-NRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEE----------------------E-CSST-TCCEEEEEECTTSCEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEE----------------------e-CCCc-CCCceeeEECCCCCEEEEecCC-ceEEEECC-CCCEEEecCCCCCCCC
Confidence 110 0 1111 2578899999998776665555 69999998 55544332 234678
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
..++++++|+.+++...++.|..||. +++... .......+.+++++++|++.+ +......+..++. +. ..
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~-~g--~~--- 215 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITT-SG--EI--- 215 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-TC--CE---
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECC-CC--cE---
Confidence 99999999988877777889999999 666543 233445688999999988655 4333344555443 11 00
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.. .....+. .+.+++++++|+.+++...+ +.|..||. +++... . .+..+...+.++++ ++
T Consensus 216 ------~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~---~-~~~~~~~~~~~i~~-~~ 276 (299)
T 2z2n_A 216 ------TE-FKIPTPNARPHAITAGAGIDLWFTEWGA------NKIGRLTS-NNIIEE---Y-PIQIKSAEPHGICF-DG 276 (299)
T ss_dssp ------EE-EECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEEET-TTEEEE---E-ECSSSSCCEEEEEE-CS
T ss_pred ------EE-EECCCCCCCceeEEECCCCCEEEeccCC------ceEEEECC-CCceEE---E-eCCCCCCccceEEe-cC
Confidence 00 0111222 68899999999866654344 78999998 343321 1 12234566788999 87
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|++ . ++...+.+..++
T Consensus 277 g~l-----~-v~~~~~~l~~~~ 292 (299)
T 2z2n_A 277 ETI-----W-FAMECDKIGKLT 292 (299)
T ss_dssp SCE-----E-EEETTTEEEEEE
T ss_pred CCE-----E-EEecCCcEEEEE
Confidence 763 3 333355555554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-13 Score=121.06 Aligned_cols=244 Identities=8% Similarity=0.016 Sum_probs=151.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----CcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g~i~vw~~~~~ 176 (445)
.+.+++|+|+|++++++..++.|.+|+.+. ++..... ..+...+.+++|+|+|+.+++...+ +.|.+|+....
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~--~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPET--KEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTT--CCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCC--CcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 467899999999888888899999998753 4433322 2456789999999997544444444 58999987632
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-----CCeEEEEEccCCCceeee
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIR 251 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~ 251 (445)
.....+. . ..+ ...+.+++++|+|+++++...+ .+.|..+|..+++...+.
T Consensus 123 ~~~~~~~----------------------~-~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 123 NLQDIIE----------------------D-LST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp SCEEEEC----------------------S-SSS-CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEEEEEc----------------------c-Ccc-CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 2110100 0 011 2578999999999877765431 146677776665555544
Q ss_pred cCCCCeeEEEEcCCCCEEEE-EecCCeEEEEeCCC-CCc-ccc-----c--CCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 252 RGFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNT-WTS-EPW-----S--STSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~-~~~-~~~-----~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.....+..++|+|+|+.|++ .+.++.|++||+++ +.. ..+ . .....+..++++++|+++++. ..+..+.
T Consensus 179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~-~~~~~v~ 257 (333)
T 2dg1_A 179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM-YGQGRVL 257 (333)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE-ETTTEEE
T ss_pred cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE-cCCCEEE
Confidence 44456889999999986654 45678999999964 222 111 0 111367889999999876644 3333444
Q ss_pred EEEeccCCCCccccccCcccccccccc------CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLT------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.++. +.+.+..+. ++. .+.+++|+||++.|++++.+++....+.|+.+++.
T Consensus 258 ~~d~--------------~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 258 VFNK--------------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECT--------------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EECC--------------CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 4432 111122222 122 48899999998888766655321111455555544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-13 Score=121.03 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=153.1
Q ss_pred CCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (445)
.+.....+++|+|+++.++.++ .++.|..|+.... .. .+..+ ...+.++++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------------~~~~~-~~~~~~l~~ 76 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------------PEMHP-SHHQNGHCL 76 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------------EEESS-CSSEEEEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------------EEECC-CCCcceeeE
Confidence 3556678999999987455544 5689999998732 11 12223 257899999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEE----e-------------cCCeE
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAA----K-------------FDGTF 278 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~----~-------------~dg~v 278 (445)
+|+|+++++...+ +.|.+||..+++...+... ...+.+++++|+|+++++. + ..+.|
T Consensus 77 ~~dg~l~v~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 77 NKQGHLIACSHGL-RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp CTTCCEEEEETTT-TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCCCcEEEEecCC-CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 9999977666555 5999999988876544321 2457789999999988873 3 13467
Q ss_pred EEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc-cccccccCCC-ccceE
Q 013338 279 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQ-GIEKI 356 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~ 356 (445)
+.++.. ++...+.........++|+|+++.+ ++......+..+++.... .. .....+..+. .+.++
T Consensus 156 ~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g----------~~~~~~~~~~~~~~~p~~i 223 (296)
T 3e5z_A 156 FRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARG----------ETEYQGVHFTVEPGKTDGL 223 (296)
T ss_dssp EEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSS----------CEEEEEEEECCSSSCCCSE
T ss_pred EEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCC----------cCcCCCeEeeCCCCCCCeE
Confidence 777766 5555555566678899999999998 565656667777653110 00 0011111122 57889
Q ss_pred EeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCCCCCCeEEEEecCe
Q 013338 357 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 357 ~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~~~~~~l~~~~~~G 430 (445)
+++++|+++++. + +.|.+||.+ ++.+ ..+..+.. +++++|+ |+++. |.++..+|
T Consensus 224 ~~d~~G~l~v~~--~------~~v~~~~~~-g~~~-----~~~~~~~~-~~~~~f~~~d~~~-----L~v~t~~~ 278 (296)
T 3e5z_A 224 RVDAGGLIWASA--G------DGVHVLTPD-GDEL-----GRVLTPQT-TSNLCFGGPEGRT-----LYMTVSTE 278 (296)
T ss_dssp EEBTTSCEEEEE--T------TEEEEECTT-SCEE-----EEEECSSC-CCEEEEESTTSCE-----EEEEETTE
T ss_pred EECCCCCEEEEc--C------CeEEEECCC-CCEE-----EEEECCCC-ceeEEEECCCCCE-----EEEEcCCe
Confidence 999999976665 4 789999987 4443 24555556 8999994 77663 66665543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-13 Score=123.20 Aligned_cols=241 Identities=10% Similarity=0.061 Sum_probs=155.6
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~ 180 (445)
...+++. +++++++...++.|.+||.. +++.+..+. ....+..+++++++ +++++. .++.|.+||..+.....
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~--t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDIN--TFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETT--TCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECc--ccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEE
Confidence 5667774 45555556678999999985 466656553 45678999999996 666666 67999999987332211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe--cCCeEEEEEccCCCceeeecCCCCee
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
.+..+. ..+. ......+++ ++..|+++.. + +.|.++|+.+++............
T Consensus 120 ~i~~g~--------------------~~~~-~~~p~~i~~--~~~~lyv~~~~~~-~~v~viD~~t~~~~~~i~~g~~p~ 175 (328)
T 3dsm_A 120 YIECPD--------------------MDME-SGSTEQMVQ--YGKYVYVNCWSYQ-NRILKIDTETDKVVDELTIGIQPT 175 (328)
T ss_dssp EEECTT--------------------CCTT-TCBCCCEEE--ETTEEEEEECTTC-CEEEEEETTTTEEEEEEECSSCBC
T ss_pred EEEcCC--------------------cccc-CCCcceEEE--ECCEEEEEcCCCC-CEEEEEECCCCeEEEEEEcCCCcc
Confidence 111110 0000 014556777 4555666653 5 699999999987765554455678
Q ss_pred EEEEcCCCCEEEEEecC----------CeEEEEeCCCCCccc-cc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 259 ILKWSPTGDYFFAAKFD----------GTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~d----------g~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.++++|+|++++++..+ +.|.++|..+++... +. ........++|+|+++.++++.. .+..++..
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~ 252 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVE 252 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETT
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECC
Confidence 89999999977776654 789999999887642 22 12346889999999999987633 45555542
Q ss_pred cCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEE----cCCCcccceEEEEEEccCCCeee
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY----KGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s----~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
.... .....+.... ....++++|++..|+++. .. ++.|.+||.+ ++++.
T Consensus 253 t~~~-----------~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 253 ADRV-----------PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYRYSPQ-GKLID 306 (328)
T ss_dssp CSSC-----------CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEEECTT-CCEEE
T ss_pred CCce-----------eeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEEECCC-CCEEE
Confidence 2110 0001111112 678999999655555554 22 2899999998 77653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-14 Score=141.57 Aligned_cols=257 Identities=9% Similarity=0.018 Sum_probs=155.9
Q ss_pred ccCCCEEEEEECCCe---EEEEEccCC---CCcceeE-----EecCCCCCeeEEEECcCCCcEEEEecC-----CcEEEE
Q 013338 108 HQHKHIVAFISGSTQ---VIVRDYEDS---EGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIW 171 (445)
Q Consensus 108 sp~g~~la~~~~d~~---i~iw~~~~~---~~~~~~~-----~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw 171 (445)
+|+|++++....++. ..||..+.. .+..... +..+|...+..++|||||++++++..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389999998765443 567776543 3333222 122343468899999999888877654 359999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-------------eEE
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------SFT 238 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g-------------~v~ 238 (445)
|+..+..... .+ + ...+..++|+|| +.|++++.+.+ .|+
T Consensus 195 dl~tg~~~~~------------------------~~--~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~ 246 (741)
T 1yr2_A 195 GVADGKPLAD------------------------EL--K-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW 246 (741)
T ss_dssp ETTTCCEEEE------------------------EE--E-EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred ECCCCCCCCc------------------------cC--C-CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence 9984322110 01 1 122457899999 99999887632 389
Q ss_pred EEEccCCCc--eeeecC---CCCeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCC--C-cccccCCCCCeeEEEECC
Q 013338 239 IWDVAQGLG--TPIRRG---FGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW--T-SEPWSSTSGFVTGATWDP 305 (445)
Q Consensus 239 vwd~~~~~~--~~~~~~---~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~sp 305 (445)
+|++.++.. ..+... ...+..+.|+|||++|+..+.++ .|++||+.++ + ...+..+........ +|
T Consensus 247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~ 325 (741)
T 1yr2_A 247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG 325 (741)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence 999987653 223322 23588999999999998777544 8999999887 5 555555544455443 48
Q ss_pred CCCeEEEEEcCCc---eEEEEEeccCCCCccccccCcccccccc-ccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 306 EGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 306 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
+|+.|++....+. .+..+++... . ..... +..+. .+.+++|+ ++.++++...+ +..
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~ 386 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGS-----------T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHD------AKS 386 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSS-----------S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEET------TEE
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCC-----------c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEEC------CEE
Confidence 9998887765432 3444443210 0 11112 22223 46677777 55666676666 555
Q ss_pred EEEEcc-CCCeeeeeeeeeeeC-CCCCCCceeEeecCCC
Q 013338 381 AIYDAR-RTPLISLSLIGFIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 381 ~vwd~~-~~~~~~~~~~~~~~~-~~~~v~~v~~spdg~~ 417 (445)
+||.++ .++.. ..+.. +...+..++++||++.
T Consensus 387 ~l~~~~~~g~~~-----~~l~~~~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 387 QVLAFDLDGKPA-----GAVSLPGIGSASGLSGRPGDRH 420 (741)
T ss_dssp EEEEEETTSCEE-----EECBCSSSCEEEEEECCBTCSC
T ss_pred EEEEEeCCCCce-----eeccCCCCeEEEEeecCCCCCE
Confidence 555443 23322 23332 2456778889998764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-13 Score=124.06 Aligned_cols=256 Identities=9% Similarity=-0.050 Sum_probs=161.8
Q ss_pred CCCeEEEEEccCCCCcceeEEec-----CCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccccc
Q 013338 119 GSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 192 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 192 (445)
.++.|.++|.++ ++....+.. ........+++.. ++++++.. ++.|.+||..+.+.
T Consensus 15 ~~~~l~~~d~~t--~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~-------------- 76 (328)
T 3dsm_A 15 SNATLSYYDPAT--CEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKE-------------- 76 (328)
T ss_dssp CCBEEEEEETTT--TEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCE--------------
T ss_pred CCceEEEEECCC--CEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEE--------------
Confidence 378999999853 443332211 1224467788753 45555554 69999999884332
Q ss_pred ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-ecCCeEEEEEccCCCceeeecCCC------CeeEEEEcCC
Q 013338 193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFG------GLSILKWSPT 265 (445)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~g~v~vwd~~~~~~~~~~~~~~------~v~~~~~sp~ 265 (445)
+..+.. ......++++++++ ++++. .+ +.|.+||+.+++......... ....+++ +
T Consensus 77 -----------~~~i~~--~~~p~~i~~~~~g~-lyv~~~~~-~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~ 139 (328)
T 3dsm_A 77 -----------VGRITG--FTSPRYIHFLSDEK-AYVTQIWD-YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y 139 (328)
T ss_dssp -----------EEEEEC--CSSEEEEEEEETTE-EEEEEBSC-SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E
T ss_pred -----------EEEcCC--CCCCcEEEEeCCCe-EEEEECCC-CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E
Confidence 222322 25688999999984 55555 56 699999999887654433333 6677888 4
Q ss_pred CCEEEEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC---------CceEEEEEeccCCCCccc
Q 013338 266 GDYFFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG---------SLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 266 g~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~ 334 (445)
+..|.++. .++.|.++|+.+++.............+.++|+|++++++... ...+..++..
T Consensus 140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~-------- 211 (328)
T 3dsm_A 140 GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE-------- 211 (328)
T ss_dssp TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT--------
T ss_pred CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC--------
Confidence 45555554 4889999999998874333334456789999999866654322 1344554432
Q ss_pred cccCccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 335 HLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
+.+....+... .....++|+|++++|+++. +.|.+||..++++... ..+......+..++++
T Consensus 212 -----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--------~~v~~~d~~t~~~~~~---~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 212 -----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--------NDIWRMPVEADRVPVR---PFLEFRDTKYYGLTVN 275 (328)
T ss_dssp -----TTEEEEEEECCTTCCCEEEEECTTSCEEEEES--------SSEEEEETTCSSCCSS---CSBCCCSSCEEEEEEC
T ss_pred -----CCeEEEEEecCCCCCceeEEEecCCCEEEEEc--------cEEEEEECCCCceeee---eeecCCCCceEEEEEc
Confidence 22222233221 2578999999999998863 4599999988775421 1122224567889999
Q ss_pred ecCCCCCCCeEEEE----ecCeeeEeeee
Q 013338 413 FHDKFKQGPLLSVC----WSSGFCCTYPL 437 (445)
Q Consensus 413 pdg~~~~~~~l~~~----~~~G~v~~~~~ 437 (445)
|++.. +.... +.+|.|.+|+.
T Consensus 276 p~~g~----lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 276 PNNGE----VYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp TTTCC----EEEEECTTSSSEEEEEEECT
T ss_pred CCCCe----EEEEcccccccCCEEEEECC
Confidence 96443 45555 57888888864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=138.36 Aligned_cols=245 Identities=12% Similarity=0.059 Sum_probs=153.7
Q ss_pred CeeEEEEccCCCEEEEEECC-----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc--------
Q 013338 101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-------- 167 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~-------- 167 (445)
.+..++|||||++||+++.+ ..|++||++. ++...... +...+..++|+|| +.|+++..++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t--g~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD--GKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT--CCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC--CCCCCccC--CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 58899999999999987643 4689999854 54433211 1222357899999 99998887643
Q ss_pred ------EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC----CeE
Q 013338 168 ------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSF 237 (445)
Q Consensus 168 ------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----g~v 237 (445)
|++|++.+...... ++.....+ ...+..+.|||||++|+..+.+. ..|
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~---------------------lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQ---------------------PVFATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTV 296 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred CCCCCEEEEEECCCCchhCE---------------------EEeccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence 77787753221111 11111222 13578999999999999887641 289
Q ss_pred EEEEccCC--C-ceeeecCCCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCC--Cccccc-CCCCCeeEEEECCCC
Q 013338 238 TIWDVAQG--L-GTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTW--TSEPWS-STSGFVTGATWDPEG 307 (445)
Q Consensus 238 ~vwd~~~~--~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~--~~~~~~-~~~~~v~~~~~sp~~ 307 (445)
++||+.++ + ...+..+...+.... +|+|+.|+..+.+ +.|++||+.++ +...+. .+...+..++|+ ++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 99999887 5 566666655555554 4899988877753 46999999885 333333 334456677777 44
Q ss_pred CeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEEEEEc-CCCcccceEEEEEE
Q 013338 308 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYD 384 (445)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~~~s~-d~~d~~d~~i~vwd 384 (445)
.+++....++....+.+ +. ++.....+..+ . .+..++++|+++.|+.... ... .++|++||
T Consensus 375 -~lv~~~~~dg~~~l~~~-~~-----------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~---P~~i~~~d 438 (741)
T 1yr2_A 375 -RLFASYIHDAKSQVLAF-DL-----------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ---PATVLALD 438 (741)
T ss_dssp -EEEEEEEETTEEEEEEE-ET-----------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE---EEEEEEEE
T ss_pred -EEEEEEEECCEEEEEEE-eC-----------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC---CCEEEEEE
Confidence 44444333333333322 11 22233334332 2 6888999999986664432 222 28899999
Q ss_pred ccCCCe
Q 013338 385 ARRTPL 390 (445)
Q Consensus 385 ~~~~~~ 390 (445)
+.+++.
T Consensus 439 ~~tg~~ 444 (741)
T 1yr2_A 439 PATAKT 444 (741)
T ss_dssp TTTTEE
T ss_pred CCCCcE
Confidence 987663
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-12 Score=117.58 Aligned_cols=294 Identities=15% Similarity=0.130 Sum_probs=175.8
Q ss_pred EEccCCCEEEEEEC-----CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEE
Q 013338 106 SWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICI 170 (445)
Q Consensus 106 ~~sp~g~~la~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~v 170 (445)
...|+++++++... ++.|.+.|.. +++.+..+..+.. + . ++++|||++++++.. ++.|.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~--t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT--TTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC--CCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 34688888887764 5788888874 5666666654433 3 4 999999988887752 478999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~ 249 (445)
||..+......+..+.. -+.........++|+|||++++++... ++.|.++|+.+++...
T Consensus 114 iD~~t~~v~~~I~v~~g-------------------~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDA-------------------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp ECTTTCCEEEEEEETTC-------------------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred EECCCCeEEEEEECCCc-------------------cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99984433322211100 000001356789999999999988752 3699999999987765
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-CCcc-----cccCCCCCe-eEEEE-CCCCCeEEEEEcCCceEE
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSE-----PWSSTSGFV-TGATW-DPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~~-----~~~~~~~~v-~~~~~-sp~~~~l~~~~~~~~~~~ 321 (445)
...-.+. ...+....+.+++.+.||++.+.++.+ ++.. .+......+ ....| .++|++++.+. ++.+.
T Consensus 175 tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~ 250 (386)
T 3sjl_D 175 MLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIH 250 (386)
T ss_dssp EEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEE
T ss_pred EEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEE
Confidence 4433221 122333455667777888888888876 4431 111111222 22466 47887666543 35677
Q ss_pred EEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~ 395 (445)
.+++........ ..+.+ ........+-. +...++++|+++.|+....++.+ .-.+.|.+.|+.+++.+...+
T Consensus 251 v~d~~~~~~~v~-~~~~~-~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 251 QIDLSSGDAKFL-PAVEA-LTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp EEECTTSSCEEC-CCEES-SCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred EEECCCCcceee-cceec-cccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 777543211000 00000 00000001111 45668889999999887542110 012689999999998875433
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+. ..+++++|+||++. .+++..+.+|.|.+++..
T Consensus 329 vg------~~~~~lavs~D~~~---~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 329 MG------HEIDSINVSQDEKP---LLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EE------EEECEEEECSSSSC---EEEEEETTTTEEEEEETT
T ss_pred CC------CCcceEEECCCCCe---EEEEEcCCCCeEEEEECC
Confidence 32 25789999999862 145556778999988753
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-12 Score=115.26 Aligned_cols=238 Identities=12% Similarity=0.028 Sum_probs=153.2
Q ss_pred CeeEEEECcCCCcEEE-E-ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPNGGRSLS-V-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~-~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
...+++++++|. +++ + ..++.|.+|+....... .. ...+ ...+.+++++++
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~------------------------~~~~-~~~p~~i~~~~~ 77 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VL------------------------PFNG-LYQPQGLAVDGA 77 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E-EC------------------------CCCS-CCSCCCEEECTT
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc-eE------------------------eeCC-cCCcceeEECCC
Confidence 678999999975 555 5 45689999986522110 00 0111 246788999999
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc-cCCCCCeeEE
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGA 301 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~ 301 (445)
|+++++.. + +.|.+||........+.. ....+..++++++|+.+++...++.|.+|+..+...... ......+.++
T Consensus 78 g~l~v~~~-~-~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 78 GTVYVTDF-N-NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155 (270)
T ss_dssp CCEEEEET-T-TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred CCEEEEcC-C-CEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence 98555544 6 699999987765543332 236789999999999777777788999998766544222 2223467889
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-CccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
+++++|++++ +......+..++.... ........+ ..+.+++++++|..+++...+ +.|
T Consensus 156 ~~~~~g~l~v-~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~------~~v 215 (270)
T 1rwi_B 156 AVDNSGNVYV-TDTDNNRVVKLEAESN-------------NQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQV 215 (270)
T ss_dssp EECTTCCEEE-EEGGGTEEEEECTTTC-------------CEEECCCSSCCSEEEEEECTTCCEEEEETTT------SCE
T ss_pred EEeCCCCEEE-EECCCCEEEEEecCCC-------------ceEeecccCCCCceEEEECCCCCEEEEECCC------CcE
Confidence 9999998554 4333344444442111 111111112 257899999999666654444 789
Q ss_pred EEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeeeecc
Q 013338 381 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 442 (445)
Q Consensus 381 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~~~~ 442 (445)
.+|+........ ....+...+.+++++|+|+ ++...+.+++|.+|.+....+
T Consensus 216 ~~~~~~~~~~~~-----~~~~~~~~p~~i~~~~~g~-----l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 216 VKLLAGSTTSTV-----LPFTGLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEECTTCSCCEE-----CCCCSCSCEEEEEECTTCC-----EEEEEGGGTEEEEECCCGGGS
T ss_pred EEEcCCCCccee-----eccCCCCCceeEEECCCCC-----EEEEECCCCEEEEEcCCCccc
Confidence 999987644331 1112335678999999876 466778899999998876554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-11 Score=112.89 Aligned_cols=292 Identities=9% Similarity=-0.060 Sum_probs=167.0
Q ss_pred EccCCCEEEEEEC--CC---eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEE
Q 013338 107 WHQHKHIVAFISG--ST---QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIW 171 (445)
Q Consensus 107 ~sp~g~~la~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw 171 (445)
..|+++++.+... .. .|.++|.. +++.+..+..+ ... .++++|||++++++.. ++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~--t~~~~~~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAG--SGSILGHVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECC--CCeEEEEecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467777666543 22 77888875 46655555432 223 8999999888887752 5779999
Q ss_pred ccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceee
Q 013338 172 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~ 250 (445)
|..+......+..+. .-+.........++|+|||++|++++.. .+.|.++| .+++....
T Consensus 103 D~~t~~~~~~i~~~~-------------------~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 103 DPVTFLPIADIELPD-------------------APRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred ECCCCcEEEEEECCC-------------------ccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 987333222221110 0000001234589999999999998753 35899999 88876555
Q ss_pred -ecCCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcccc-c-----CCCCC-eeEEEECCCCCeEEEEEcCCceEE
Q 013338 251 -RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPW-S-----STSGF-VTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 251 -~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~-~-----~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
...... +.+.|++ +.+++.+.||.+.++|. +++.... . ....+ .....+.+++..++... ..+.+.
T Consensus 163 ~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~ 237 (373)
T 2mad_H 163 LLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKIL 237 (373)
T ss_pred EcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEE
Confidence 443332 4455665 45567778999999999 7665311 1 11111 12345666665544333 234566
Q ss_pred EEEeccCCCCccccccCcccccccccc-CCCccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
.+++....... ...+........... ...+...++++||++.|+++..++.+ ...+.|.++|+.+++.+.
T Consensus 238 vid~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~---- 312 (373)
T 2mad_H 238 QADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS---- 312 (373)
T ss_pred EEeccCCcceE-eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE----
Confidence 66653211000 000000000000000 00124457899999988887543211 012689999999877753
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+.. .....+++|+|||++ .+++..+.++.|.+++..
T Consensus 313 -~i~~-g~~p~~i~~s~Dg~~---~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 313 -QISL-GHDVDAISVAQDGGP---DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred -EEEC-CCCcCeEEECCCCCe---EEEEEcCCCCeEEEEECC
Confidence 3332 335789999999983 134444568999988864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-11 Score=105.70 Aligned_cols=259 Identities=10% Similarity=0.039 Sum_probs=167.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.++++.++|++.++...++.|.+|+.. ++............+.++++.+++..+++...++.|..|+.. .. .
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~ 94 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS---GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-F 94 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC---CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-e
Confidence 357899999999988876678999999864 333222222334678999999996544444446889999876 21 1
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v 257 (445)
..+ .+... ...+.+++++++|+++++...+ +.|..||.. ++..... .....+
T Consensus 95 ~~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 95 TEY-----------------------PLPQP-DSGPYGITEGLNGDIWFTQLNG-DRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp EEE-----------------------ECSST-TCCEEEEEECSTTCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCE
T ss_pred EEe-----------------------cCCCC-CCCCccceECCCCCEEEEccCC-CeEEEECCC-CCEEEccCCCCCCCc
Confidence 111 01111 2568899999999876665445 689999987 5544332 234678
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+++++++|+.+++...++.|..||. +++...+ ......+..++++++|+..+ +......+..++. .
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~---~------ 217 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITT---T------ 217 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT---T------
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcC---C------
Confidence 99999999997666666789999998 5554332 23445688999999987655 4333344444442 1
Q ss_pred ccCcccccc-ccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 336 LLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 336 ~~~~~~~~~-~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
.... ..+.... .+.+++++++|+..++...+ +.|..|+. +++.... .+......+.++++.+
T Consensus 218 -----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~~~ 281 (300)
T 2qc5_A 218 -----GEISEYDIPTPNARPHAITAGKNSEIWFTEWGA------NQIGRITN-DNTIQEY----QLQTENAEPHGITFGK 281 (300)
T ss_dssp -----CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEECT-TSCEEEE----ECCSTTCCCCCEEECT
T ss_pred -----CcEEEEECCCCCCCceEEEECCCCCEEEeccCC------CeEEEECC-CCcEEEE----ECCccCCccceeEeCC
Confidence 0100 0111222 67899999999866554333 78999998 4444311 1223345688999999
Q ss_pred cCC
Q 013338 414 HDK 416 (445)
Q Consensus 414 dg~ 416 (445)
+|+
T Consensus 282 ~g~ 284 (300)
T 2qc5_A 282 DGS 284 (300)
T ss_dssp TSC
T ss_pred CCC
Confidence 876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.53 E-value=6.2e-12 Score=113.40 Aligned_cols=242 Identities=8% Similarity=0.093 Sum_probs=153.6
Q ss_pred CeeEEEEccCCCEEEE-------EECCCeEEEEEccCCCCcceeEEe---cCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 101 DLQGVSWHQHKHIVAF-------ISGSTQVIVRDYEDSEGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-------~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
...+++|+++|.++++ +..++.|.+|+.. +++...... .++...+.+++++++++.++++...+.|.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK--TGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT--TCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC--CCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 3578999999988877 5678899999864 344322211 124467899999999445666665567888
Q ss_pred EccCCCCCcccc-ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--------------CC
Q 013338 171 WAPSYPGNAASV-RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--------------SS 235 (445)
Q Consensus 171 w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------~g 235 (445)
|+.. . ....+ ... ........+.+++++++|+++++...+ .+
T Consensus 97 ~d~~-g-~~~~~~~~~---------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 97 VQTD-G-TFEEIAKKD---------------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EETT-S-CEEECCSBC---------------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EeCC-C-CEEEEEecc---------------------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 8876 2 22111 110 001112468899999999877665443 13
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEc----CCCCEEEEE-ecCCeEEEEeCC-CCCc------ccccCCC-CCeeEEE
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDYFFAA-KFDGTFYLWETN-TWTS------EPWSSTS-GFVTGAT 302 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~-~~dg~v~iwd~~-~~~~------~~~~~~~-~~v~~~~ 302 (445)
.|..||.. ++...+.........++|+ |+++.|+++ ..++.|++||.+ +++. ..+..+. ..+..++
T Consensus 154 ~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp EEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred eEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 67777765 5544444444567889999 999766555 567899999986 3432 1222332 5678899
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
++++|++.++.. ....+..++.. +.+.+..+..+. .+.+++|+|+|++|++++.+. +.|.
T Consensus 233 ~d~~G~l~v~~~-~~~~i~~~d~~-------------~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-----~~l~ 293 (314)
T 1pjx_A 233 FDEDNNLLVANW-GSSHIEVFGPD-------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-----NAVW 293 (314)
T ss_dssp EBTTCCEEEEEE-TTTEEEEECTT-------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT-----TEEE
T ss_pred ECCCCCEEEEEc-CCCEEEEEcCC-------------CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-----CeEE
Confidence 999998776543 23334444321 123333344443 689999999999776665432 6899
Q ss_pred EEEccC
Q 013338 382 IYDARR 387 (445)
Q Consensus 382 vwd~~~ 387 (445)
.|++..
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 999874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-12 Score=115.18 Aligned_cols=254 Identities=11% Similarity=0.001 Sum_probs=156.8
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.+++||||+++++++ .++.|.+||.. +.+....+..+. ......++|+|||++++++.. +
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~--t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~ 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV--TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence 399999999988765 36789999985 455555553322 225678999999988888764 5
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC-
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ- 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~- 244 (445)
+.|.++|+.+.+.. .++... + . ...+....+.+++.+.| |.+.+.++.+
T Consensus 160 ~~VsVID~~t~~vv-------------------------~tI~v~--g-~-~~~~P~g~~~~~~~~~D-G~~~~v~~~~~ 209 (386)
T 3sjl_D 160 PAVGVVDLEGKAFK-------------------------RMLDVP--D-C-YHIFPTAPDTFFMHCRD-GSLAKVAFGTE 209 (386)
T ss_dssp CEEEEEETTTTEEE-------------------------EEEECC--S-E-EEEEEEETTEEEEEETT-SCEEEEECCSS
T ss_pred CeEEEEECCCCcEE-------------------------EEEECC--C-c-ceeecCCCceeEEECCC-CCEEEEECCCC
Confidence 89999999844332 222211 1 1 11222233445555556 5777777654
Q ss_pred CCceeee-c----CCCCe-eEEEEc-CCCCEEEEEecCCeEEEEeCCCCCcccccC-------------CCCCeeEEEEC
Q 013338 245 GLGTPIR-R----GFGGL-SILKWS-PTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------------TSGFVTGATWD 304 (445)
Q Consensus 245 ~~~~~~~-~----~~~~v-~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------------~~~~v~~~~~s 304 (445)
++..... . ....+ ...+|. ++|++++ .+.+|.|++.|+.+........ .......++++
T Consensus 210 g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~ 288 (386)
T 3sjl_D 210 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 288 (386)
T ss_dssp SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence 4332111 1 11222 234664 6776555 5568999999998765321110 12234457789
Q ss_pred CCCCeEEEEEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCc
Q 013338 305 PEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDD 374 (445)
Q Consensus 305 p~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d 374 (445)
++++.+++.... ...+..+++. +.+.+.++.....+.++++++|++ +|+++...+
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-------------t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~-- 353 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAK-------------TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD-- 353 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT--
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC--
Confidence 999998876431 1345555542 444555555444789999999997 677765422
Q ss_pred ccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 375 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
+.|.++|..+++.+. .+.. ....+.+.+++|
T Consensus 354 ---~~VsViD~~t~k~~~-----~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 ---KTLYIHDAESGEELR-----SVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp ---TEEEEEETTTCCEEE-----EECC-CCSSCCEEEECC
T ss_pred ---CeEEEEECCCCcEEE-----EecC-CCCCceeEECCc
Confidence 889999999988763 3332 344568888887
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-11 Score=111.77 Aligned_cols=236 Identities=12% Similarity=0.007 Sum_probs=147.4
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.+++||||++|+++. .++.|.+||.. +.+....+..+ +......++|+|||++++++.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC--CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence 899999999999876 36789999985 34444443222 1133568999999998888874 4
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC-eEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~ 244 (445)
+.|.++| .+......+ +... . ++.+.|+++ .+++.+.| |.+.++|. +
T Consensus 148 ~~v~viD-~t~~~~~~~------------------------i~~~--~---~~~~~~~~~~~~~~~~~d-g~~~~vd~-~ 195 (373)
T 2mad_H 148 PAVGLVV-QGGSSDDQL------------------------LSSP--T---CYHIHPGAPSTFYLLCAQ-GGLAKTDH-A 195 (373)
T ss_pred CeEEEEE-CCCCEEeEE------------------------cCCC--c---eEEEEeCCCceEEEEcCC-CCEEEEEC-C
Confidence 7899999 733222110 1111 1 244556554 34444556 78999998 6
Q ss_pred CCceeee------cCCCC-eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccC----------CCCCeeEEEEC
Q 013338 245 GLGTPIR------RGFGG-LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSS----------TSGFVTGATWD 304 (445)
Q Consensus 245 ~~~~~~~------~~~~~-v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~----------~~~~v~~~~~s 304 (445)
++..... ..... .....+.+++..++..+..+.+.+.|+.+.... .+.. .......+.++
T Consensus 196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s 275 (373)
T 2mad_H 196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL 275 (373)
T ss_pred CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence 6554221 11111 233566777666555557889999999765431 1110 11223447889
Q ss_pred CCCCeEEEEEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCc
Q 013338 305 PEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDD 374 (445)
Q Consensus 305 p~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d 374 (445)
|+++.++++... ...+..++.. +.+.+.++.......+++|+|||+ +++++....
T Consensus 276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~-------------t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~-- 340 (373)
T 2mad_H 276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-------------VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT-- 340 (373)
T ss_pred CCCCEEEEEeccCCcccccCCCCeEEEEECC-------------CCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC--
Confidence 999988876532 2345555542 344455554444689999999999 677665321
Q ss_pred ccceEEEEEEccCCCee
Q 013338 375 IYKGLIAIYDARRTPLI 391 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~ 391 (445)
+.|.+||+.+++.+
T Consensus 341 ---~~V~ViD~~t~~vv 354 (373)
T 2mad_H 341 ---EVLHIYDAGAGDQD 354 (373)
T ss_pred ---CeEEEEECCCCCEE
Confidence 89999999998876
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-12 Score=113.46 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=155.3
Q ss_pred CCCeeEEEECcCCCcEEEE--------ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCce
Q 013338 144 QRDVKVLEWRPNGGRSLSV--------GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI 215 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~--------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (445)
-....+++|++++ .++++ ..++.|.+|+...... ..+.. ....++ ...+
T Consensus 17 ~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~--------------------~~~~~~-~~~~ 73 (314)
T 1pjx_A 17 IPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICK--------------------PEVNGY-GGIP 73 (314)
T ss_dssp CTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCE-EEEEC--------------------CEETTE-ECCE
T ss_pred CCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEe--------------------cccCCC-CCCC
Confidence 3457899999986 45544 5578999999763221 11000 000112 2568
Q ss_pred eEEEECCC-CCeEEEEEecCCeEEEEEccCCCceee-ecC-----CCCeeEEEEcCCCCEEEEEecC-------------
Q 013338 216 TALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPI-RRG-----FGGLSILKWSPTGDYFFAAKFD------------- 275 (445)
Q Consensus 216 ~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~-----~~~v~~~~~sp~g~~l~~~~~d------------- 275 (445)
.+++++++ ++++++ ... +.|.+||.. ++...+ ... ...+.+++++++|+.+++...+
T Consensus 74 ~~i~~~~~~g~l~v~-~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 150 (314)
T 1pjx_A 74 AGCQCDRDANQLFVA-DMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp EEEEECSSSSEEEEE-ETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred ceEEEecCCCcEEEE-ECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccC
Confidence 89999999 664444 445 379999988 665544 221 2358899999999888777655
Q ss_pred --CeEEEEeCCCCCcccccCCCCCeeEEEEC----CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC
Q 013338 276 --GTFYLWETNTWTSEPWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 276 --g~v~iwd~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
+.|..||.. ++...+.........++|+ |+++.++++......+..+++.... . .. .......+..
T Consensus 151 ~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-~----~~--~~~~~~~~~~ 222 (314)
T 1pjx_A 151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-K----IE--NKKVWGHIPG 222 (314)
T ss_dssp SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-E----EE--EEEEEEECCC
T ss_pred CCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-c----cc--cceEEEECCC
Confidence 578888876 5554433334456889999 9998777776555666666643100 0 00 0011222233
Q ss_pred C--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe
Q 013338 350 S--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW 427 (445)
Q Consensus 350 ~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~ 427 (445)
+ ..+..++++++|+++++...+ +.|.+||.++++.. ..+..+...+.+++|+|+|+. +.....
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~----l~v~~~ 287 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKT----IFVTEH 287 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSE----EEEEET
T ss_pred CCCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCE----EEEEeC
Confidence 3 346789999999888776655 78999999866543 234445567889999999873 233334
Q ss_pred cCeeeEeeeee
Q 013338 428 SSGFCCTYPLI 438 (445)
Q Consensus 428 ~~G~v~~~~~~ 438 (445)
.+|.|..|++.
T Consensus 288 ~~~~l~~~~~~ 298 (314)
T 1pjx_A 288 ENNAVWKFEWQ 298 (314)
T ss_dssp TTTEEEEEECS
T ss_pred CCCeEEEEeCC
Confidence 55778777654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-11 Score=113.17 Aligned_cols=292 Identities=10% Similarity=0.047 Sum_probs=172.0
Q ss_pred cCCCEEEEEECC-----CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcEEEEcc
Q 013338 109 QHKHIVAFISGS-----TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAP 173 (445)
Q Consensus 109 p~g~~la~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i~vw~~ 173 (445)
++++++++.... +.|.++|.. +++.+..+..+. .+ .++++||+++++++.. ++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~--t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS--TGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC--CCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466666655542 689999884 466666665443 23 8999999988888763 578999998
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCceeeec
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~~~~ 252 (445)
.+......+..+. .-+.........+.|+|||++++++... .+.|.+.|+.+++......
T Consensus 157 ~t~~vv~~I~v~g-------------------~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 157 VTFLPIADIELPD-------------------APRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp TTCCEEEEEEETT-------------------CCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEEECCC-------------------ccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 8443333222110 0000001245678999999999998753 3699999999987754443
Q ss_pred CCCCeeEEEEcCCC-CEEEEEecCCeEEEEeCCCCCcc-----cccCCCCC-eeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 253 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 253 ~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~-v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
-.+. ....|++ +.+++.+.||.+.+.+..+++.. .+.....+ ...+.|.+++..++.... .+.+..+++
T Consensus 218 v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~ 293 (426)
T 3c75_H 218 VPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADL 293 (426)
T ss_dssp CCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEE
T ss_pred cCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEec
Confidence 3221 2334443 45566667777777777555442 11111112 224578999887776543 456777776
Q ss_pred ccCCCCccccccCcc-ccccccccCCCccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeeeeeeee
Q 013338 326 ASKPPSLDAHLLPVD-LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
........ ..+... ...+..-........++++|+++++++...++.. ..++.|.++|+.+.+.+...++..
T Consensus 294 ~~~~~~v~-~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 294 TAEGATFR-APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp CSSCEEEC-CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred cCCceEEe-eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 43210000 000000 0000000000123457999999988877532110 012689999999988775433322
Q ss_pred CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 401 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 401 ~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
....++|+|||+. .+++..|.++.|.+++..
T Consensus 371 ----~P~gia~spDg~~---~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 371 ----EIDSINVSQDAEP---LLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp ----EECEEEECCSSSC---EEEEEETTTTEEEEEETT
T ss_pred ----CcCeEEEccCCCE---EEEEEcCCCCeEEEEECC
Confidence 4679999999882 145555679999998863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-12 Score=116.82 Aligned_cols=244 Identities=9% Similarity=-0.023 Sum_probs=150.9
Q ss_pred CCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
.....|+|++++. |+++.. ++.|++||..... +....... .... ++|+|+
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~-------------------------~~~~~~~~--~~~~-ia~~~~ 181 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNK-------------------------VTTVHPGF--KGGK-PAVTKD 181 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTE-------------------------EEEEEETC--CBCB-CEECTT
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCE-------------------------EEEeeccC--CCCc-eeEecC
Confidence 4578999999965 555554 5899999987221 11111111 2334 999999
Q ss_pred CCeEEEEEecCC-eEEEEEccCCCceeee----c-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc----c-
Q 013338 224 GRYLASASYESS-SFTIWDVAQGLGTPIR----R-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----S- 292 (445)
Q Consensus 224 ~~~l~~~~~d~g-~v~vwd~~~~~~~~~~----~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~----~- 292 (445)
++.|+++..+.+ .|.+|+...+...... . ....+.+++++|++..|+++..++.|+.||..++....+ .
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 999988887633 7999998776543332 2 456788999999655666677788999999988765333 1
Q ss_pred CCCCCe-e-EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC--cccc--ccccccCCCccceEEeCCCCCEEE
Q 013338 293 STSGFV-T-GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP--VDLP--DIVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 293 ~~~~~v-~-~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
.....- . .++|+|++..|+++......+..+..... .....-. .... -............++++|+|++++
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv 338 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI 338 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence 222222 3 89999976777767655555555543211 0000000 0000 000000011478999999999655
Q ss_pred EEE-cCCCcccceEEEEEEccCCCeeeeeeeeeeeCC---------------CCCCCceeEeecCCCCCCCeEEEEecCe
Q 013338 367 VSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP---------------GDNPKPVAFSFHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 367 ~~s-~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------------~~~v~~v~~spdg~~~~~~~l~~~~~~G 430 (445)
+-+ .+ ++|+.|++.++.+. .+.++ -..+..++++|+|. ++...+.++
T Consensus 339 ad~~~~------~~I~~~~~~~G~v~------~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-----lyVad~~n~ 401 (409)
T 3hrp_A 339 VDGFKG------YCLRKLDILDGYVS------TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-----YWIAEAWGK 401 (409)
T ss_dssp EETTTT------CEEEEEETTTTEEE------EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-----EEEEESTTC
T ss_pred EeCCCC------CEEEEEECCCCEEE------EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-----EEEEECCCC
Confidence 543 33 89999998776543 22222 13467788888865 566778889
Q ss_pred eeEeeee
Q 013338 431 FCCTYPL 437 (445)
Q Consensus 431 ~v~~~~~ 437 (445)
+|..+.+
T Consensus 402 ~Ir~i~~ 408 (409)
T 3hrp_A 402 AIRKYAV 408 (409)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 9987764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=118.60 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=127.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCC-------CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSE-------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
....++.+++++...++++|+.++ +.+|+++... +.........+.. |+.|+| |+..|+++ .++.|++
T Consensus 36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 344799999999999999998875 5569875321 0011111123666 999999 75556555 8899999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
||+....... ....+. ..+.++.+.+.. ++++..| |.|.+||+.++....
T Consensus 111 ~dv~sl~~~~-------------------------~~~~~~-~~v~~i~~~~p~--~av~~~d-G~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 111 LDLEELSEFR-------------------------TVTSFE-KPVFQLKNVNNT--LVILNSV-NDLSALDLRTKSTKQ- 160 (388)
T ss_dssp EESSSTTCEE-------------------------EEEECS-SCEEEEEECSSE--EEEEETT-SEEEEEETTTCCEEE-
T ss_pred EEchhhhccC-------------------------ccceee-cceeeEEecCCC--EEEEECC-CCEEEEEccCCcccc-
Confidence 9998433211 122332 567777776542 8888888 899999999876654
Q ss_pred ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc---ccc------c---CCCCCeeEEEECCCCCeEEEE
Q 013338 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW------S---STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 251 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~------~---~~~~~v~~~~~sp~~~~l~~~ 313 (445)
+...|++++|||+| ++.|..||++++|+....+. ..+ . .|...|.++.|.+++.++++-
T Consensus 161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 34689999999999 67889999999999988773 222 1 367889999999999988853
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-11 Score=113.74 Aligned_cols=246 Identities=15% Similarity=0.159 Sum_probs=147.2
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC--cEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg--~i~vw~~~~~~~ 178 (445)
....++|+++|+++++...++.|++|+.+ ++...... .. ..... ++|+++++.++++..++ .|.+|+......
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~--~g~~~~~~-~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVD--DNKVTTVH-PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETT--TTEEEEEE-ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECC--CCEEEEee-cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 57899999999988777778999999974 24333332 22 33344 99999988788777765 677777652211
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee----ecCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRGF 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~----~~~~ 254 (445)
.. .+..+..+....+.+++++|++..|+++..+ +.|+.||..++....+ ....
T Consensus 207 ~~----------------------~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~-~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 207 PT----------------------RIGQLGSTFSGKIGAVALDETEEWLYFVDSN-KNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EE----------------------EEEECCTTSCSCCCBCEECTTSSEEEEECTT-CEEEEEETTTCCEEEEEECCCCSC
T ss_pred eE----------------------EeeeccchhcCCcEEEEEeCCCCeEEEEECC-CcEEEEECCCCCEEEEecccccCC
Confidence 11 1111112123567899999955556666555 6999999987765433 1111
Q ss_pred CCe--e-EEEEcCC-CCEEEEEecCCeEEEEeCCCCCcccccCC---------------CCCeeEEEECCCCCeEEEEEc
Q 013338 255 GGL--S-ILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWSST---------------SGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 255 ~~v--~-~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~~~~~ 315 (445)
... . .++|+|+ +..+++-..++.|+.|+.... ...+.++ -.....++++++|+ |+++..
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~ 341 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG 341 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence 112 3 9999996 555556666889999998753 3222221 23578999999998 444554
Q ss_pred -CCceEEEEEeccCCCCccccccCc--ccccc--ccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 316 -GSLTLGSIHFASKPPSLDAHLLPV--DLPDI--VSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 316 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
....+..+.+.+.. .. .+... ..... ..... -.....++++++|.++++-..+ ++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~--v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n------~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGY--VS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG------KAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTE--EE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT------CEEEEEEE
T ss_pred CCCCEEEEEECCCCE--EE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC------CeEEEEEe
Confidence 55556665532110 00 00000 00000 00000 1157899999997766654444 78887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-11 Score=119.71 Aligned_cols=247 Identities=10% Similarity=0.087 Sum_probs=156.1
Q ss_pred CCeeEEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC--------
Q 013338 100 VDLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-------- 166 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg-------- 166 (445)
..+..++|||||++||.+. ....|++||+++ ++.+.... +......++|+ |++.|+++..+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3688899999999999754 224688898854 55433221 11113578999 999999888774
Q ss_pred -----cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecc-cCCCceeEEEECCCCCeEEEEEecC---CeE
Q 013338 167 -----GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYES---SSF 237 (445)
Q Consensus 167 -----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---g~v 237 (445)
.|++|++.+...... ++..... +. ..+..+.|+|||++|+...... ..|
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~---------------------~v~~~~~~~~-~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDR---------------------LVFGAIPAQH-HRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCE---------------------EEESCSGGGC-CSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred cCCCcEEEEEECCCCcccce---------------------EEEecCCCCC-eEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 388888764322111 1211222 22 3567899999999987665421 389
Q ss_pred EEEEccCC--CceeeecCCCCeeEEEEcCCCCEEEEEec-C---CeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCC
Q 013338 238 TIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAAKF-D---GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 238 ~vwd~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d---g~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~ 308 (445)
+++|+.++ ....+..+....... |+++|..|+..+. + +.|..+|+.++.. ..+..+...+. .|+++++
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT
T ss_pred EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC
Confidence 99999876 455666665555555 6677776654443 3 5899999998765 44555655554 8999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc--CCCccceEEeCCCCCEEEEEEcC-CCcccceEEEEEEc
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKG-GDDIYKGLIAIYDA 385 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~s~d-~~d~~d~~i~vwd~ 385 (445)
+|+.....++. ..+.+++. .+.....+. ....+..+.++++++.|+....+ ..- +.|+.||+
T Consensus 339 ~lv~~~~~~g~-~~l~~~d~-----------~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP---~~l~~~d~ 403 (693)
T 3iuj_A 339 YLFAEYMVDAT-ARVEQFDY-----------EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP---PTLYRFEP 403 (693)
T ss_dssp EEEEEEEETTE-EEEEEECT-----------TSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC---CEEEEECT
T ss_pred EEEEEEEECCe-eEEEEEEC-----------CCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC---CEEEEEEC
Confidence 98876554432 23444432 222222222 22256777888998877665432 111 68999999
Q ss_pred cCCCee
Q 013338 386 RRTPLI 391 (445)
Q Consensus 386 ~~~~~~ 391 (445)
.+++..
T Consensus 404 ~~g~~~ 409 (693)
T 3iuj_A 404 KSGAIS 409 (693)
T ss_dssp TTCCEE
T ss_pred CCCeEE
Confidence 877643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-11 Score=108.03 Aligned_cols=226 Identities=14% Similarity=0.224 Sum_probs=146.3
Q ss_pred CCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
...-..+..|+++++.++.+.. ++.|..|+...... . .+. . ...+.+++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~-------------------------~~~-~-~~~~~~i~~~ 62 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q-------------------------RVT-M-DAPVSSVALR 62 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E-------------------------EEE-C-SSCEEEEEEB
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E-------------------------EEe-C-CCceEEEEEC
Confidence 3344568999997677777665 58999999873211 1 111 1 2578999999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEec-----------CCeEEEEeCCC
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKF-----------DGTFYLWETNT 285 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~-----------dg~v~iwd~~~ 285 (445)
++|+++++ . + +.|.+||..+++...+... ...+++++++|+|+++++... .+.|+.+|..
T Consensus 63 ~dG~l~v~-~-~-~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~- 138 (297)
T 3g4e_A 63 QSGGYVAT-I-G-TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD- 138 (297)
T ss_dssp TTSSEEEE-E-T-TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-
T ss_pred CCCCEEEE-E-C-CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-
Confidence 99995544 3 5 4899999988766544332 235789999999997665432 2345555543
Q ss_pred CCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 286 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 286 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
++...+.......+.++|+|+++.++++......+..+++........ ..+.+..+..+. .+..++++++|++
T Consensus 139 g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~------~~~~~~~~~~~~~~p~g~~~d~~G~l 212 (297)
T 3g4e_A 139 HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS------NRRSVYKLEKEEQIPDGMCIDAEGKL 212 (297)
T ss_dssp SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE------EEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc------CcEEEEECCCCCCCCCeeEECCCCCE
Confidence 333333333445688999999998887766556676666521110000 011122222222 5788999999987
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCC
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 417 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~ 417 (445)
.++...+ +.|.+||.++++++. .+..+...+++++|+ ||++.
T Consensus 213 wva~~~~------~~v~~~d~~tG~~~~-----~i~~p~~~~t~~~f~g~d~~~ 255 (297)
T 3g4e_A 213 WVACYNG------GRVIRLDPVTGKRLQ-----TVKLPVDKTTSCCFGGKNYSE 255 (297)
T ss_dssp EEEEETT------TEEEEECTTTCCEEE-----EEECSSSBEEEEEEESGGGCE
T ss_pred EEEEcCC------CEEEEEcCCCceEEE-----EEECCCCCceEEEEeCCCCCE
Confidence 7766555 789999998877652 455555678999998 88763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-11 Score=107.54 Aligned_cols=214 Identities=9% Similarity=0.044 Sum_probs=142.7
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
.+++|++++.++.|.+||.+ +|+.+..+..+....+.++.++|+|+.++ +.++.|..||.. ++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~-G~~----------- 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD-GRE----------- 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT-SCE-----------
T ss_pred CCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC-CCE-----------
Confidence 46788999999999999973 57777766543224689999999975444 557889999873 221
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-------CCCCeeEEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-------GFGGLSILKW 262 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-------~~~~v~~~~~ 262 (445)
+..+..+....+.++.+.++|+.+++.+.+.+.|..+|. +++...... +......+++
T Consensus 68 --------------~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 68 --------------LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp --------------EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred --------------EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence 111222222467889999999999988762257888876 454432221 1124556788
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
.++|+++++...++.|..||.. ++..........+.++.+.++|+.++++... ..+..++.. +++
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~-~~v~~~d~~-------------tG~ 197 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDA-HCFVQLNLE-------------SNR 197 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTT-SEEEEECTT-------------TCC
T ss_pred CCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCC-CeEEEEeCc-------------CCc
Confidence 9999999999999999999998 7663323323456678889999988865433 334443321 133
Q ss_pred ccccccCC-----C--ccceEEeCCCCCEEEEEE
Q 013338 343 DIVSLTGS-----Q--GIEKIAWDASGERLAVSY 369 (445)
Q Consensus 343 ~~~~~~~~-----~--~v~~~~~sp~g~~l~~~s 369 (445)
.+.++..+ . .+..++..++|..+++.+
T Consensus 198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 33333211 1 478888999999888765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-10 Score=99.84 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=151.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..+.+++++++|.++++...++.|..|+.+ ++............+.++++.+++..+++...++.|.+|+.. . ..
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~ 131 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK---GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-KI 131 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CE
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC---CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-CE
Confidence 458899999999988876668889888864 332222211245578999999986544444456889999873 2 11
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee--ecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~--~~~~~~v 257 (445)
..+ ..... ...+..++++++|+..++.... +.|..||. +++.... ......+
T Consensus 132 ~~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~-~~i~~~~~-~g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 132 REY-----------------------ELPNK-GSYPSFITLGSDNALWFTENQN-NAIGRITE-SGDITEFKIPTPASGP 185 (299)
T ss_dssp EEE-----------------------ECSST-TCCEEEEEECTTSCEEEEETTT-TEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEe-----------------------cCCCC-CCCCceEEEcCCCCEEEEeCCC-CEEEEEcC-CCcEEEeeCCCCCCcc
Confidence 110 01112 2568899999999766655445 69999998 6655443 2234568
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+++++++|+.+++...++.|.+||. +++...+ ......+.+++++++|+..+ +......+..++. +.
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~-~g------- 255 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTS-NN------- 255 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEET-TT-------
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECC-CC-------
Confidence 89999999997777767889999999 6665332 23456789999999998555 4434455555553 10
Q ss_pred ccCccccccccc--cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 336 LLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 336 ~~~~~~~~~~~~--~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
.+..+ ..+. .+.++++ ++|++.++.+ . +.+..++.+++
T Consensus 256 -------~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~------~~l~~~~~~~~ 296 (299)
T 2z2n_A 256 -------IIEEYPIQIKSAEPHGICF-DGETIWFAME-C------DKIGKLTLIKD 296 (299)
T ss_dssp -------EEEEEECSSSSCCEEEEEE-CSSCEEEEET-T------TEEEEEEEC--
T ss_pred -------ceEEEeCCCCCCccceEEe-cCCCEEEEec-C------CcEEEEEcCcc
Confidence 11111 1222 6889999 8888776643 3 56777777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-11 Score=106.18 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=143.9
Q ss_pred CeeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
......|+|+|+ ++++...++.|..|+. ++.. ..+ ..+...+..++++++|+ ++++.. ++.|.+|+.+ +.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~---~g~~-~~~-~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~--g~ 117 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE---DGTV-DVL-LDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD--GQ 117 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET---TSCE-EEE-EESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC---CCCE-EEE-eCCCCccceeeECCCCC-EEEEECCCCEEEEECCC--CC
Confidence 356899999998 5555667889999976 2332 223 23556789999999965 555554 4789999865 22
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE----EEe------------cCCeEEEEEc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS----ASY------------ESSSFTIWDV 242 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~----~~~------------d~g~v~vwd~ 242 (445)
...+ .....+.....+..++++|+|++.++ +.. ..+.|..||.
T Consensus 118 ~~~~---------------------~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 118 AHLL---------------------VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEEE---------------------ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEEE---------------------EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 2111 11112211245788999999987775 321 1146788887
Q ss_pred cCCCceeeecCCCCeeEEEEcCCCCEEEEEecC------CeEEEEeCCCCCc---ccc-cCCCCCeeEEEECCCCCeEEE
Q 013338 243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTS---EPW-SSTSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~---~~~-~~~~~~v~~~~~sp~~~~l~~ 312 (445)
.+++...+. .......++|+|+++.|+++... +.|++|++..... ..+ .........++++++|++.+
T Consensus 177 ~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv- 254 (305)
T 3dr2_A 177 DGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS- 254 (305)
T ss_dssp SSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-
T ss_pred CCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-
Confidence 777766555 55667899999999988777665 7899999876432 111 11234456789999999554
Q ss_pred EEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcC
Q 013338 313 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d 371 (445)
+. . . + +.+++. +++.+..+.....+.+++|+|+++.|+.++.+
T Consensus 255 ~~-~-~--g-v~~~~~-----------~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 255 SS-G-T--G-VCVFDS-----------DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp CC-S-S--E-EEEECT-----------TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred ec-C-C--c-EEEECC-----------CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence 32 2 2 2 232322 33334444433468899999999988887764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.2e-11 Score=111.04 Aligned_cols=237 Identities=12% Similarity=0.001 Sum_probs=148.1
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.++++|||++|+++. .++.|.++|.. +++....+..+ .......++|+|||++++++.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~--t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~ 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV--TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC--CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence 899999999988876 36789999875 46555555332 1234678999999988888774 4
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC-CeEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~g~v~vwd~~~ 244 (445)
+.|.+.|+.+.+.. ..+.-. .. ....|++ +.+++.+.| |.+.+.++.+
T Consensus 200 ~~VsVID~~t~kvv-------------------------~~I~v~--g~---~~~~p~g~~~~v~~~~d-G~~~~V~~~~ 248 (426)
T 3c75_H 200 PAVGVVDLEGKTFD-------------------------RMLDVP--DC---YHIFPASPTVFYMNCRD-GSLARVDFAD 248 (426)
T ss_dssp CEEEEEETTTTEEE-------------------------EEEECC--SE---EEEEEEETTEEEEEETT-SSEEEEECCT
T ss_pred CeEEEEECCCCeEE-------------------------EEEEcC--Cc---eeeccCCCcEEEEEcCC-CCEEEEECCC
Confidence 78999999843322 222211 11 1223333 233333444 4666666544
Q ss_pred CCceee----ec-CCCC-eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-------------CCCCeeEEEECC
Q 013338 245 GLGTPI----RR-GFGG-LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------------TSGFVTGATWDP 305 (445)
Q Consensus 245 ~~~~~~----~~-~~~~-v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------------~~~~v~~~~~sp 305 (445)
++.... .. .... ...+.+.++++.++..+..+.|.+.|..+........ .......++++|
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 433211 11 1111 2246789999988888888999999997654321110 011223478999
Q ss_pred CCCeEEEEEcC---------CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC-EEEEEEcCCCcc
Q 013338 306 EGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDI 375 (445)
Q Consensus 306 ~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~s~d~~d~ 375 (445)
+++.++++... ...+..++.. +.+.+.++........++|+|||+ +++++....
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~-------------T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s--- 392 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAE-------------TGERINKIELGHEIDSINVSQDAEPLLYALSAGT--- 392 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT---
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECC-------------CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC---
Confidence 99988876431 2344555432 445555555444689999999999 888877432
Q ss_pred cceEEEEEEccCCCee
Q 013338 376 YKGLIAIYDARRTPLI 391 (445)
Q Consensus 376 ~d~~i~vwd~~~~~~~ 391 (445)
+.|.++|+.+++.+
T Consensus 393 --~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 --QTLHIYDAATGEEL 406 (426)
T ss_dssp --TEEEEEETTTCCEE
T ss_pred --CeEEEEECCCCCEE
Confidence 89999999998876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-10 Score=102.70 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=140.9
Q ss_pred eeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 147 VKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 147 v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
..+++|+|+++.++.+.. ++.|..|+..... . ..+. . ...+.+++|+|+|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-~-------------------------~~~~-~-~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR-K-------------------------TVHA-L-PFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-E-------------------------EEEE-C-SSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-E-------------------------EEEE-C-CCcceEEEEeCCCe
Confidence 467899998777776664 5889999876221 0 1111 1 25789999999998
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCcccccCC
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSST 294 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~~~ 294 (445)
++++. . ..|.+||..+++...+... ...+.+++++|+|+++++... .+.|+.++ +++...+...
T Consensus 103 l~v~~--~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~ 177 (326)
T 2ghs_A 103 QLIAS--D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD 177 (326)
T ss_dssp EEEEE--T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE
T ss_pred EEEEE--C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC
Confidence 77654 4 3699999988876554332 235889999999997665542 25677777 4554443333
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCC
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD 373 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~ 373 (445)
....+.++|+|+++.++++......+..+++..... . .+. ....+..+.... .+..++++++|.+.++...+
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G-l--~~~--~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-- 250 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG-L--PTG--KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-- 250 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC-C--BSS--CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT--
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC-C--ccc--CceEEEECCCCCCCCCeeEECCCCCEEEEEeCC--
Confidence 345678999999998887765556666666531000 0 000 001111222222 46789999999877765544
Q ss_pred cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCCC
Q 013338 374 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF 417 (445)
Q Consensus 374 d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~~ 417 (445)
+.|.+||. +++.+ ..+..+...+++++|+ |+++.
T Consensus 251 ----~~v~~~d~-~g~~~-----~~i~~~~~~~~~~af~g~d~~~ 285 (326)
T 2ghs_A 251 ----GAVDRYDT-DGNHI-----ARYEVPGKQTTCPAFIGPDASR 285 (326)
T ss_dssp ----TEEEEECT-TCCEE-----EEEECSCSBEEEEEEESTTSCE
T ss_pred ----CEEEEECC-CCCEE-----EEEECCCCCcEEEEEecCCCCE
Confidence 78999998 45443 2344455568899998 88663
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-11 Score=110.51 Aligned_cols=263 Identities=11% Similarity=0.047 Sum_probs=156.3
Q ss_pred CeeEEEEccCCCEEEEEE--CCCeEEEEEccCCCCcceeEE------ecCCCCCeeEEEECcCCCcEEEEec------CC
Q 013338 101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSEGKDACIL------TSDSQRDVKVLEWRPNGGRSLSVGC------KG 166 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~--~d~~i~iw~~~~~~~~~~~~~------~~~~~~~v~~l~~spd~~~l~~~~~------dg 166 (445)
....++++|+|+++++.. .++.++||.++ +++.. .+ ...+-..+..+++++++ +|+++.. ++
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCee-cCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 477999999999988764 23436777775 34322 11 11345679999999995 5555442 47
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE----ecCCeEEEEEc
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----YESSSFTIWDV 242 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~d~g~v~vwd~ 242 (445)
.|.+||+.+......+.... .. ......+..+++++++..++.+. .+ +.|.+||+
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~-------------------~~-~~~~~~~~~v~vd~~~g~~yvtd~~~~~~-~~i~v~d~ 152 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPP-------------------PI-TLSNSFVNDLAVDLIHNFVYISDPAPDDK-AALIRVDL 152 (343)
T ss_dssp EEEEEETTTTEEEEEEECCT-------------------TT-SCTTCCCCEEEEETTTTEEEEEECCSGGG-CEEEEEET
T ss_pred eEEEEECCCCeEEEEEECCh-------------------hh-cccccccceEEEecCCCEEEEEcCccCCC-CeEEEEEC
Confidence 89999987332111111000 00 01124568999998655555544 35 69999999
Q ss_pred cCCCceeeecCC-CC-eeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 243 AQGLGTPIRRGF-GG-LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 243 ~~~~~~~~~~~~-~~-v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.+++.......+ .. .....+.++|..+.+.+.++.++.|. ..+..++|+|+++.|+++......+
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEE
T ss_pred CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeE
Confidence 988765544321 11 10134555777777777787776553 2467899999999998776555556
Q ss_pred EEEEeccCCCCccccccCccccccccc--cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeee
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG 397 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~ 397 (445)
+.+........ .+. ..+....+ .++. ....++++++|.++++...+ +.|.+||..+++...
T Consensus 220 ~~~~~~~~~~~---~~~--~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~------~~V~~~d~~~G~~~~----- 283 (343)
T 2qe8_A 220 YRIKSADLSNL---QLT--DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH------SAIGVITSADRAYKL----- 283 (343)
T ss_dssp EEEEHHHHTCT---TCC--HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG------TEEEEEETTTTEEEE-----
T ss_pred EEEEHHHhcCC---CCC--hhhhhcceEecccCCCCceEEECCCCCEEEEccCC------CeEEEEECCCCCEEE-----
Confidence 55553210000 000 00001111 1222 46789999999887776555 899999985554321
Q ss_pred eeeC-CCCCCCceeEeecCCC
Q 013338 398 FIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 398 ~~~~-~~~~v~~v~~spdg~~ 417 (445)
.... +...+.+++|.++|++
T Consensus 284 ~~~~~~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 284 LVTDEKLSWTDSFNFGSDGYL 304 (343)
T ss_dssp EEECGGGSCEEEEEECTTSCE
T ss_pred EEECCceecCCeeEECCCCcE
Confidence 1111 2445789999988763
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-11 Score=113.35 Aligned_cols=232 Identities=11% Similarity=0.042 Sum_probs=146.9
Q ss_pred cCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE-C-CCCCeEEEE
Q 013338 154 PNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-G-PDGRYLASA 230 (445)
Q Consensus 154 pd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~~~~l~~~ 230 (445)
+||+++++...+ +.|.+.|+... .+.+.+.-........+++ + |++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~-------------------------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVM-------------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTT-------------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCc-------------------------eEeeEEeCCCCCCCcceeeeecCCCcEEEEe
Confidence 387777776654 67999998832 2333222222246778887 5 899999888
Q ss_pred E-----------------ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC-----------------
Q 013338 231 S-----------------YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG----------------- 276 (445)
Q Consensus 231 ~-----------------~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg----------------- 276 (445)
+ ..++.+.+.|..+.+......-.+....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v 233 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 233 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceE
Confidence 4 222589999999876654433333667889999999998887543
Q ss_pred ---------------------eEEEEeCCC--CCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 277 ---------------------TFYLWETNT--WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 277 ---------------------~v~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
.|.+.|.++ ++. ...........++.++|||++++++...+..+..+++.......
T Consensus 234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~ 313 (595)
T 1fwx_A 234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF 313 (595)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc
Confidence 367777776 332 22222334567899999999999998888888888875321000
Q ss_pred cccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC----------CCeeeeeeeeeeeCC
Q 013338 333 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----------TPLISLSLIGFIRGP 402 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~ 402 (445)
..++ ......+.++....+...++|+|+| ++++...- |++|.+||++. .+.+....++...+|
T Consensus 314 ~~~l-~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh 386 (595)
T 1fwx_A 314 YENA-DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH 386 (595)
T ss_dssp HSCC-CGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE
T ss_pred cccc-CcccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEEEeeccccccc
Confidence 0000 0011122333333378899999999 66665543 28999999986 344433233222244
Q ss_pred CCCCCceeEeecCCC
Q 013338 403 GDNPKPVAFSFHDKF 417 (445)
Q Consensus 403 ~~~v~~v~~spdg~~ 417 (445)
...-.++.++|||+|
T Consensus 387 ~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 387 LKTVMGETLDATNDW 401 (595)
T ss_dssp EEETTTTSTTCCSSE
T ss_pred ceeccceEeCCCCCE
Confidence 434456788999997
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=8.6e-10 Score=99.93 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=136.4
Q ss_pred eeEEEEccCCC-EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
..+.+|+|++. ++++...++.|..|+.+. ++. ..+. ....+.+++|+++|+ ++++.. ..|.+||..... ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~--~~~-~~~~--~~~~v~~i~~~~dg~-l~v~~~-~gl~~~d~~~g~-~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS--GRK-TVHA--LPFMGSALAKISDSK-QLIASD-DGLFLRDTATGV-LT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT--TEE-EEEE--CSSCEEEEEEEETTE-EEEEET-TEEEEEETTTCC-EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC--CcE-EEEE--CCCcceEEEEeCCCe-EEEEEC-CCEEEEECCCCc-EE
Confidence 45789999854 555555778899998742 332 2232 356799999999965 444444 458888876322 11
Q ss_pred ccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEec-----CCeEEEEEccCCCceeeecCC
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRGF 254 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~~~~ 254 (445)
. +.... ......+..++++|+|+++++...+ .+.|..++ +++...+....
T Consensus 123 ~----------------------~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~ 178 (326)
T 2ghs_A 123 L----------------------HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADI 178 (326)
T ss_dssp E----------------------EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEE
T ss_pred E----------------------EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCC
Confidence 1 11111 1112468899999999866654321 13555555 45444443444
Q ss_pred CCeeEEEEcCCCCEEEEE-ecCCeEEEEeCC--CC-Ccc---c---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 255 GGLSILKWSPTGDYFFAA-KFDGTFYLWETN--TW-TSE---P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~--~~-~~~---~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.....++|+|+++.|+.+ +.++.|++||+. ++ +.. . +......+..++++++|.+.++.. ....+..++
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 567899999999977555 457899999986 55 321 1 122334577899999998666443 223344433
Q ss_pred eccCCCCccccccCccccccccccCCC-ccceEEeC-CCCCEEEEEEcC
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD-ASGERLAVSYKG 371 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s-p~g~~l~~~s~d 371 (445)
. +.+.+..+..+. .+++++|+ |+++.|++++..
T Consensus 258 ~--------------~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 258 T--------------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp T--------------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred C--------------CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 2 223333444444 68999998 898887766544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=101.39 Aligned_cols=187 Identities=11% Similarity=-0.010 Sum_probs=126.8
Q ss_pred cCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec
Q 013338 154 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 233 (445)
Q Consensus 154 pd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 233 (445)
|+ +.+++++.++.|.+||..+++ .+-.+..+....+.++.++|+|++++ +.+
T Consensus 4 ~~-~~lv~~~~~~~v~~~d~~tG~-------------------------~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~ 55 (276)
T 3no2_A 4 PQ-HLLVGGSGWNKIAIINKDTKE-------------------------IVWEYPLEKGWECNSVAATKAGEILF--SYS 55 (276)
T ss_dssp CC-EEEEECTTCSEEEEEETTTTE-------------------------EEEEEECCTTCCCCEEEECTTSCEEE--ECB
T ss_pred CC-cEEEeeCCCCEEEEEECCCCe-------------------------EEEEeCCCccCCCcCeEECCCCCEEE--eCC
Confidence 44 566666778999999986332 22223333213688999999999888 346
Q ss_pred CCeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCccccc------CCCCCeeEEEEC
Q 013338 234 SSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWS------STSGFVTGATWD 304 (445)
Q Consensus 234 ~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~s 304 (445)
+.|..||. +++....... ...+.++.+.++|+++++.+. ++.|..+|........+. .+......+++.
T Consensus 56 -~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 56 -KGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp -SEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred -CCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC
Confidence 58999998 6766544433 257888999999999999887 788888887433222221 111245567889
Q ss_pred CCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 305 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 305 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++|+++++. ..+..+..++. .++.+.++.....+.++.+.++|+.+++++.+ ++|..+|
T Consensus 134 ~~G~~lv~~-~~~~~v~~~d~--------------~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~------~~v~~~d 192 (276)
T 3no2_A 134 KKGNYLVPL-FATSEVREIAP--------------NGQLLNSVKLSGTPFSSAFLDNGDCLVACGDA------HCFVQLN 192 (276)
T ss_dssp TTSCEEEEE-TTTTEEEEECT--------------TSCEEEEEECSSCCCEEEECTTSCEEEECBTT------SEEEEEC
T ss_pred CCCCEEEEe-cCCCEEEEECC--------------CCCEEEEEECCCCccceeEcCCCCEEEEeCCC------CeEEEEe
Confidence 999988755 33444444432 34444455444456778889999999887665 7899999
Q ss_pred ccCCCee
Q 013338 385 ARRTPLI 391 (445)
Q Consensus 385 ~~~~~~~ 391 (445)
.++|+.+
T Consensus 193 ~~tG~~~ 199 (276)
T 3no2_A 193 LESNRIV 199 (276)
T ss_dssp TTTCCEE
T ss_pred CcCCcEE
Confidence 9988876
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.6e-11 Score=119.20 Aligned_cols=224 Identities=9% Similarity=0.033 Sum_probs=137.8
Q ss_pred CCCCCeeEEEECcCCCcEEEEecC-----CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 216 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (445)
++...+..++|||||++++.+... ..|++||+.++.... ..+.. ....
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~------------------------~~~~~---~k~~ 178 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE------------------------TPLKD---VKFS 178 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE------------------------EEEEE---EESC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc------------------------cccCC---ceec
Confidence 355578899999998888765432 468999998432111 01111 1135
Q ss_pred EEEECCCCCeEEEEEecC------------CeEEEEEccCCCc--eeeecC----CCCeeEEEEcCCCCEEEEEec----
Q 013338 217 ALSWGPDGRYLASASYES------------SSFTIWDVAQGLG--TPIRRG----FGGLSILKWSPTGDYFFAAKF---- 274 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~------------g~v~vwd~~~~~~--~~~~~~----~~~v~~~~~sp~g~~l~~~~~---- 274 (445)
.++|+ ||+.|++++.+. ..|++|++.++.. ..+... .....++.|+|||++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 257 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS 257 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence 77899 999999988772 1499999987654 333322 335788999999999865443
Q ss_pred CCeEEEEeCCCCC--cccccCCCCCeeEEEECCCCCeEEEEEcCC---ceEEEEEeccCCCCccccccCccccccccccC
Q 013338 275 DGTFYLWETNTWT--SEPWSSTSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG 349 (445)
Q Consensus 275 dg~v~iwd~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (445)
.+.|+++|+.++. ...+..+....... |+++|..|++..+.+ ..+..+.+... .......+..
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~ 325 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP-----------GPAHWRDLIP 325 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEEC
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CccccEEEec
Confidence 2589999998763 45555555555554 677777777665443 23444443211 1111233444
Q ss_pred CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCC
Q 013338 350 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDK 416 (445)
Q Consensus 350 ~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~ 416 (445)
+. .+. .|++++++|+....++.. ..|++|++..+... .+. .....+..+.++|+++
T Consensus 326 ~~~~~~--~~s~~g~~lv~~~~~~g~---~~l~~~d~~g~~~~------~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 326 ERQQVL--TVHSGSGYLFAEYMVDAT---ARVEQFDYEGKRVR------EVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp CCSSCE--EEEEETTEEEEEEEETTE---EEEEEECTTSCEEE------EECCSSSSEEEECCCCTTCS
T ss_pred CCCCEE--EEEEECCEEEEEEEECCe---eEEEEEECCCCeeE------EeecCCCceEEeeecCCCCC
Confidence 44 333 899999998887765322 47999998854332 222 1233455666666655
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-10 Score=99.67 Aligned_cols=228 Identities=11% Similarity=0.123 Sum_probs=143.1
Q ss_pred CCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
.........|+|+++.|+.++. ++.|..|+.. + ... .+..+ ...+..++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~~-------------------------~~~~~-~~~~~gl~~d 94 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TVD-------------------------VLLDA-TAFTNGNAVD 94 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CEE-------------------------EEEES-CSCEEEEEEC
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CEE-------------------------EEeCC-CCccceeeEC
Confidence 4456778999999876666664 5889999764 1 111 11222 2568899999
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEE----Eec-------------CCeEE
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFA----AKF-------------DGTFY 279 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~----~~~-------------dg~v~ 279 (445)
++|+++++...+ +.|.+|+.. ++...+... ...+.+++++|+|+.+++ +.. .+.|+
T Consensus 95 ~dG~l~v~~~~~-~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~ 172 (305)
T 3dr2_A 95 AQQRLVHCEHGR-RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY 172 (305)
T ss_dssp TTSCEEEEETTT-TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred CCCCEEEEECCC-CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEE
Confidence 999866554444 589999986 554433221 245778999999998876 332 25788
Q ss_pred EEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCC-----ceEEEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 280 LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 280 iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
.||..+++...+. .....+.++|+|+++.|+++.... ..+..+++.... +. ........ ......
T Consensus 173 ~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~------l~--~~~~~~~~-~~~~pd 242 (305)
T 3dr2_A 173 RLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA------LH--DRRHFASV-PDGLPD 242 (305)
T ss_dssp EECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE------EE--EEEEEECC-SSSCCC
T ss_pred EEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC------cc--CCeEEEEC-CCCCCC
Confidence 8888777765444 445678899999999888765432 445555543210 00 00111111 112467
Q ss_pred eEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe
Q 013338 355 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG 430 (445)
Q Consensus 355 ~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G 430 (445)
.++++++|++.++ .. +.|.+|+.+ ++.+ ..+..+. .+.+++|+|+++. |-++.+++
T Consensus 243 gi~~d~~G~lwv~-~~-------~gv~~~~~~-g~~~-----~~~~~~~-~~~~~~f~~d~~~-----L~it~~~~ 298 (305)
T 3dr2_A 243 GFCVDRGGWLWSS-SG-------TGVCVFDSD-GQLL-----GHIPTPG-TASNCTFDQAQQR-----LFITGGPC 298 (305)
T ss_dssp SEEECTTSCEEEC-CS-------SEEEEECTT-SCEE-----EEEECSS-CCCEEEECTTSCE-----EEEEETTE
T ss_pred eEEECCCCCEEEe-cC-------CcEEEECCC-CCEE-----EEEECCC-ceeEEEEeCCCCE-----EEEEcCCe
Confidence 8999999995544 33 349999985 4433 2333333 5889999987663 56665544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-09 Score=94.43 Aligned_cols=236 Identities=11% Similarity=0.093 Sum_probs=142.8
Q ss_pred EEC--cCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec------ccCCCceeEEEEC
Q 013338 151 EWR--PNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR------SQNGEQITALSWG 221 (445)
Q Consensus 151 ~~s--pd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s 221 (445)
.++ +++++|++.+. +++|.++|+.+.... -.+.++++ .........+..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~---------------------p~~~k~ie~~~~~~~~g~s~Ph~~~~~ 146 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPRE---------------------PKIIKVIEPEEVKKVSGYSRLHTVHCG 146 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTS---------------------CEEEEEECHHHHHHHHCEEEEEEEEEC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCC---------------------ceeeeeechhhcccccCCCcccceeEC
Confidence 346 78777777765 489999998632111 12333332 1111245677889
Q ss_pred CCCCeEEEEEec-----CCeEEEEEccCCCceeeecC----CCCeeEEEEcCCCCEEEEEe-------------------
Q 013338 222 PDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRG----FGGLSILKWSPTGDYFFAAK------------------- 273 (445)
Q Consensus 222 p~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~------------------- 273 (445)
|+| .++++..+ .|.|.++|..+.+.+..... ..--+.+.|+|+++.+++..
T Consensus 147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~ 225 (462)
T 2ece_A 147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR 225 (462)
T ss_dssp SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence 999 55554433 15899999998887654432 12345688999999888774
Q ss_pred cCCeEEEEeCCCCCcc-cccC--CCCCeeEEEE--CCCCCeEEEEEc-----CCceEEEEEeccCCCCccc-cccCcccc
Q 013338 274 FDGTFYLWETNTWTSE-PWSS--TSGFVTGATW--DPEGRMILLAFA-----GSLTLGSIHFASKPPSLDA-HLLPVDLP 342 (445)
Q Consensus 274 ~dg~v~iwd~~~~~~~-~~~~--~~~~v~~~~~--sp~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 342 (445)
...+|.+||+.+++.. .+.. .......+.| +|+++++++++. .++.+..+...+. .... ...++...
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~ 303 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAE 303 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCc
Confidence 3679999999987653 2222 1123445555 999999998887 6667766554321 0000 00000100
Q ss_pred ----cc----ccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-----------
Q 013338 343 ----DI----VSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP----------- 402 (445)
Q Consensus 343 ----~~----~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~----------- 402 (445)
.+ ..+.+ ......+.+||||++|+++..+. +.|.+||+..... ...++.+.-.
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-----d~VavfdV~d~~~--~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-----GEVRQYDISNPFK--PVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-----TEEEEEECSSTTS--CEEEEEEECBTTTTCBCCTTS
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC--cEEEEEEEeCCeecccccccc
Confidence 01 01111 12578999999999999988764 7899999863211 1112233211
Q ss_pred ---CCCCCceeEeecCCC
Q 013338 403 ---GDNPKPVAFSFHDKF 417 (445)
Q Consensus 403 ---~~~v~~v~~spdg~~ 417 (445)
......+++||||++
T Consensus 377 ~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp CCCCSCCCCEEECTTSSE
T ss_pred ccCCCCCCEEEEcCCCCE
Confidence 013689999999986
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-09 Score=92.13 Aligned_cols=255 Identities=9% Similarity=-0.019 Sum_probs=156.3
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcce--eEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~ 187 (445)
|++|+.+.. +.|+.++++....... ..+.......+..++|+++++.++.+.. .+.|..++...... ..+
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~----- 73 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI----- 73 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-----
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE-----
Confidence 345666553 4788888753221110 1111111245789999998777777665 48899998863211 110
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCC
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTG 266 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g 266 (445)
+... ......+++++++..|+.+....+.|.++++.......+... ......++++|++
T Consensus 74 -------------------~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~ 133 (267)
T 1npe_A 74 -------------------IRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133 (267)
T ss_dssp -------------------ECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred -------------------EECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence 1111 146789999998777777766556999999876544443332 3578899999976
Q ss_pred CEEEEEec---CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc
Q 013338 267 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 267 ~~l~~~~~---dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
..|..+.. .+.|..++++......+. ........+++++++..|+.+......+..+++... .
T Consensus 134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-------------~ 200 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-------------G 200 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-------------E
T ss_pred CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-------------c
Confidence 66655553 368999988764433322 223467899999999888888777667777665211 0
Q ss_pred ccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCC
Q 013338 343 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 343 ~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 417 (445)
....+........++. ++..|+.+...+ +.|.++|..+++... .+. +.......+++.|+++.
T Consensus 201 ~~~~~~~~~~P~gi~~--d~~~lyva~~~~-----~~v~~~d~~~g~~~~-----~i~~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 201 RRKVLEGLQYPFAVTS--YGKNLYYTDWKT-----NSVIAMDLAISKEMD-----TFHPHKQTRLYGITIALSQCP 264 (267)
T ss_dssp EEEEEECCCSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTTEEEE-----EECCSSCCCCCCEEEECSCC-
T ss_pred eEEEecCCCCceEEEE--eCCEEEEEECCC-----CeEEEEeCCCCCceE-----EEccccccccceeeecCccCC
Confidence 0111111123445655 456676665443 789999998877653 333 22234789999999763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-10 Score=101.61 Aligned_cols=198 Identities=10% Similarity=0.081 Sum_probs=124.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
.-..+..|+|++..|+.....++.|..||..+++... ......+.+++++++|+++++ . ++.|.+||..+++...+.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~ 89 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA 89 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence 3556889999766666555444799999998876533 344678999999999995554 4 678999999887764332
Q ss_pred C-----CCCCeeEEEECCCCCeEEEEEcCC--------ceEEEEEeccCCCCccccccCccccccccccCC-CccceEEe
Q 013338 293 S-----TSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAW 358 (445)
Q Consensus 293 ~-----~~~~v~~~~~sp~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 358 (445)
. ....++.++++|+|+++++..... .....+++.. ... +..+... ...+.++|
T Consensus 90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------~g~-~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------DHH-VKKYFDQVDISNGLDW 156 (297)
T ss_dssp ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------TSC-EEEEEEEESBEEEEEE
T ss_pred ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------CCC-EEEEeeccccccceEE
Confidence 2 123478899999999776543221 1123333321 111 1111111 24688999
Q ss_pred CCCCCEEEEEEcCCCcccceEEEEEEc--cCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 359 DASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 359 sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+||++.|+.+.... +.|.+|++ .++.+........+..+...+..+++.++|++ ....+..++|..|+
T Consensus 157 spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d 226 (297)
T 3g4e_A 157 SLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLD 226 (297)
T ss_dssp CTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEEC
T ss_pred cCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEc
Confidence 99999887665432 78999997 45654322223233333345677888888763 44456666666654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.2e-09 Score=93.27 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=148.2
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
....+.++++.++|..+++...++.|.+|+.. . ....+ .+... ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~~-----------------------~~~~~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKEF-----------------------EVPTP-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEE-----------------------ECSST-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEEE-----------------------ECCCC-CCcceeEEECC
Confidence 34578899999996544444457899999876 2 11111 01111 25788999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeec--CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc--ccCCCCCe
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFV 298 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v 298 (445)
+++..++...+ +.|..||.. ++...+.. ....+.+++++++|+.+++...++.|..||.. ++... +......+
T Consensus 72 ~g~l~v~~~~~-~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGA-NKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCC-CeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 99866655445 689999987 55443322 34678999999999988877778899999988 55532 22345678
Q ss_pred eEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 299 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 299 ~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
..+++.++++..+ +......+..++. +. . ... ....... .+..++++++|+..++....
T Consensus 149 ~~i~~d~~g~l~v-~~~~~~~i~~~~~-~g--~---------~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~------ 208 (300)
T 2qc5_A 149 AFITLGSDNALWF-TENQNNSIGRITN-TG--K---------LEE-YPLPTNAAAPVGITSGNDGALWFVEIMG------ 208 (300)
T ss_dssp EEEEECTTSSEEE-EETTTTEEEEECT-TC--C---------EEE-EECSSTTCCEEEEEECTTSSEEEEETTT------
T ss_pred eeEEECCCCCEEE-EecCCCeEEEECC-CC--c---------EEE-eeCCCCCCCcceEEECCCCCEEEEccCC------
Confidence 9999999998544 4443444544443 11 0 000 0111222 57899999999866654433
Q ss_pred eEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 378 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.|.+|+. +++.... .+..+...+.++++.++|++ ....+.++.|..|+
T Consensus 209 ~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 209 NKIGRITT-TGEISEY----DIPTPNARPHAITAGKNSEI-----WFTEWGANQIGRIT 257 (300)
T ss_dssp TEEEEECT-TCCEEEE----ECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEEC
T ss_pred CEEEEEcC-CCcEEEE----ECCCCCCCceEEEECCCCCE-----EEeccCCCeEEEEC
Confidence 68999998 4544321 12234456788999988763 33333445555554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-09 Score=100.10 Aligned_cols=238 Identities=12% Similarity=0.105 Sum_probs=141.6
Q ss_pred EEc--cCCCEEEEEE-CCCeEEEEEccCCCC--cceeEEe------cCCCCCeeEEEECcCCCcEEEEecC------CcE
Q 013338 106 SWH--QHKHIVAFIS-GSTQVIVRDYEDSEG--KDACILT------SDSQRDVKVLEWRPNGGRSLSVGCK------GGI 168 (445)
Q Consensus 106 ~~s--p~g~~la~~~-~d~~i~iw~~~~~~~--~~~~~~~------~~~~~~v~~l~~spd~~~l~~~~~d------g~i 168 (445)
.++ +++++|+..+ .++.|.|+|+..... +...++. .........+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 7888777644 788999999853222 2222221 0011245667889997 55544444 689
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE-----------------
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----------------- 231 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------------- 231 (445)
.++|..+.........+ .....--..+-|+|+++.++++.
T Consensus 167 ~vlD~~T~~v~~~~~~~-----------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~ 223 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEID-----------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK 223 (462)
T ss_dssp EEECTTTCCEEEECCSB-----------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred EEEECCCCeEEEEEccC-----------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence 99998743322222111 11112234688899999888874
Q ss_pred --ecCCeEEEEEccCCCceeeecCC---CCeeEEEE--cCCCCEEEEEec------CCeEEEEeCCCCCcc--c------
Q 013338 232 --YESSSFTIWDVAQGLGTPIRRGF---GGLSILKW--SPTGDYFFAAKF------DGTFYLWETNTWTSE--P------ 290 (445)
Q Consensus 232 --~d~g~v~vwd~~~~~~~~~~~~~---~~v~~~~~--sp~g~~l~~~~~------dg~v~iwd~~~~~~~--~------ 290 (445)
.. .+|.+||+.+++........ .....+.| +|+++++.++++ +++|.+|..+.++.. +
T Consensus 224 ~~~~-d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 224 DRYG-NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp HHSC-CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred hccC-CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 24 49999999987654433322 34566666 999999877764 568877655443220 0
Q ss_pred --ccC-----------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc---cCC---C
Q 013338 291 --WSS-----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---TGS---Q 351 (445)
Q Consensus 291 --~~~-----------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~ 351 (445)
... .......+.+|+||++|+++....+.+..+++.+.............+ .+... ++. .
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG-~~~~~~~~~G~~~~g 381 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG-IFHRADHPAGHKLTG 381 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT-TTTCBCCTTSCCCCS
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC-eeccccccccccCCC
Confidence 000 024578899999999999998888888888875321100001111000 00000 011 1
Q ss_pred ccceEEeCCCCCEEEEEE
Q 013338 352 GIEKIAWDASGERLAVSY 369 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s 369 (445)
....++++|||++|+++.
T Consensus 382 gPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 382 APQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEcCCCCEEEEEc
Confidence 368899999999999987
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-10 Score=103.21 Aligned_cols=244 Identities=11% Similarity=-0.030 Sum_probs=146.3
Q ss_pred EEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecCC------CCCeeEEEECcCCCcEEEEec--C
Q 013338 104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--K 165 (445)
Q Consensus 104 ~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~------~~~v~~l~~spd~~~l~~~~~--d 165 (445)
.++++|||++++++. .++.|.+||.. +++....+..+. ......++++|||++++++.. .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC--CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 799999999999886 36889999985 466666654320 134678999999988888864 3
Q ss_pred CcEEE--EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE-EEEecCCeEEEEEc
Q 013338 166 GGICI--WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDV 242 (445)
Q Consensus 166 g~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~g~v~vwd~ 242 (445)
..+.+ +|..+ ... +... +. ..+.|+++..+ +.+.| |.+.+.|+
T Consensus 147 ~~v~V~~iD~~t---v~~-------------------------i~v~--~~---~~~~p~g~~~~~~~~~d-g~~~~vd~ 192 (368)
T 1mda_H 147 AAAGLSVPGASD---DQL-------------------------TKSA--SC---FHIHPGAAATHYLGSCP-ASLAASDL 192 (368)
T ss_dssp CEEEEEETTTEE---EEE-------------------------EECS--SC---CCCEEEETTEEECCCCT-TSCEEEEC
T ss_pred CeEEEEEEchhh---ceE-------------------------EECC--Cc---eEEccCCCeEEEEEcCC-CCEEEEEC
Confidence 67888 88873 111 1110 11 11234443333 33344 57777777
Q ss_pred cC-----CCcee-----eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc---cccC-------C---CCCee
Q 013338 243 AQ-----GLGTP-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSS-------T---SGFVT 299 (445)
Q Consensus 243 ~~-----~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~-------~---~~~v~ 299 (445)
.+ ++... +.-...+. + .+++..++..+. +.|.+.|..+.... .+.. . .....
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred ccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 65 22211 11112222 3 666777766666 99999999764321 1110 0 11122
Q ss_pred EEEECCCCCeEEEEEc---C-----CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEc-
Q 013338 300 GATWDPEGRMILLAFA---G-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK- 370 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~- 370 (445)
.+.++|+++.++++.. . ......+++. +.+.+.++........++|+|||++++.+..
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-------------t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-------------VGQTSGPISNGHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-------------SCCEEECCEEEEEECEEEECCSSSCEEEEEET
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCEEEEEccC
Confidence 3789999999887644 2 1223344432 3445555554446899999999986555554
Q ss_pred -CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 371 -GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 371 -d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
+ +.|.++|+.+++.+. .+.. ......+++.+
T Consensus 335 ~~------~~VsVID~~t~kvv~-----~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 335 GT------EVLDIYDAASDQDQS-----SVEL-DKGPESLSVQN 366 (368)
T ss_dssp TT------TEEEEEESSSCEEEE-----ECCC-CSCCCEEECCC
T ss_pred CC------CeEEEEECCCCcEEE-----EEEC-CCCCCEEEeec
Confidence 4 899999999987763 3332 23345665543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-09 Score=99.62 Aligned_cols=250 Identities=12% Similarity=0.013 Sum_probs=152.6
Q ss_pred cCCCEEEEEEC-CCeEEEEEccCCCCcceeEEecCCCCCeeEEEE-C-cCCCcEEEEec------------------CCc
Q 013338 109 QHKHIVAFISG-STQVIVRDYEDSEGKDACILTSDSQRDVKVLEW-R-PNGGRSLSVGC------------------KGG 167 (445)
Q Consensus 109 p~g~~la~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~-s-pd~~~l~~~~~------------------dg~ 167 (445)
+||++|..... ++.|.+.|++ +.+....+.......+..+++ + |+++++++++. ++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~--t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD--VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT--TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECC--CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888887664 5568888885 355555443344566889998 5 99888877752 246
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-------------
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------------- 234 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------- 234 (445)
+.+.|..+.....++..+ +....++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vg---------------------------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~ 229 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVS---------------------------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE 229 (595)
T ss_dssp EEEEETTTTEEEEEEEES---------------------------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred EEEEECCCCeEEEEEEeC---------------------------CCccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence 777777632222111111 1234556677777776666442
Q ss_pred ------------------------CeEEEEEccC--CCc-eeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCC
Q 013338 235 ------------------------SSFTIWDVAQ--GLG-TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTW 286 (445)
Q Consensus 235 ------------------------g~v~vwd~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~ 286 (445)
+.|.+.|..+ ++. .....-.....++.++|||+++++++ .+.+|.++|+.+.
T Consensus 230 ~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 230 MDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 1366777766 333 33333345677899999999887665 4779999999965
Q ss_pred C------------cccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC----
Q 013338 287 T------------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---- 350 (445)
Q Consensus 287 ~------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 350 (445)
+ .............++|+|+| +++++..-++.+-.|++.......... ...+.+.++..|
T Consensus 310 ~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~---~~~~vi~kidV~yqpG 385 (595)
T 1fwx_A 310 DAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE---KVDPIKDKLDVHYQPG 385 (595)
T ss_dssp HHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC---SCCCEEEEEECSSCEE
T ss_pred ccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc---ccceeEEEeecccccc
Confidence 3 11122334567889999999 888888778888888764310000000 012233333333
Q ss_pred -C-ccceEEeCCCCCEEEEEEcCCCccc-------ceEEEEEEccCCCee
Q 013338 351 -Q-GIEKIAWDASGERLAVSYKGGDDIY-------KGLIAIYDARRTPLI 391 (445)
Q Consensus 351 -~-~v~~~~~sp~g~~l~~~s~d~~d~~-------d~~i~vwd~~~~~~~ 391 (445)
. .-.++.++|||++|+++.....|++ -..-.++|+..++..
T Consensus 386 h~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 386 HLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp EEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred cceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence 2 2345567899999999887653322 112388999766543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=106.28 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=119.5
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-----------ceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEE
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-----------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW 281 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-----------~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw 281 (445)
..++.+++++...++++|+.+ .+.+|++...+ ......... |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~--~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS--KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT--EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC--EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 468999999999999999887 57779876432 112334556 999999 99999998 88999999
Q ss_pred eCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeC
Q 013338 282 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD 359 (445)
Q Consensus 282 d~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 359 (445)
|+++... .....+...+.++.+.+.. ++++ ..++.+..|++.+. ... . +. .|++++||
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~-~~dG~L~v~dl~~~-------------~~~-~---~~~~Vs~v~WS 171 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVIL-NSVNDLSALDLRTK-------------STK-Q---LAQNVTSFDVT 171 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEE-ETTSEEEEEETTTC-------------CEE-E---EEESEEEEEEC
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEE-ECCCCEEEEEccCC-------------ccc-c---ccCCceEEEEc
Confidence 9987664 3344566678888777653 5544 34566666665321 111 1 23 79999999
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeee------e---CCCCCCCceeEeecCCC
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI------R---GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~------~---~~~~~v~~v~~spdg~~ 417 (445)
|+| ++.+..| |.+++|+...++... .+.+ . +|...|.+|.|.++++|
T Consensus 172 pkG--~~vg~~d------g~i~~~~~~~~~~~~---k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f 227 (388)
T 1xip_A 172 NSQ--LAVLLKD------RSFQSFAWRNGEMEK---QFEFSLPSELEELPVEEYSPLSVTILSPQDF 227 (388)
T ss_dssp SSE--EEEEETT------SCEEEEEEETTEEEE---EEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred CCc--eEEEEcC------CcEEEEcCCCccccc---cceecCCcccccccCCCeeEEEEEEecCCeE
Confidence 999 6677777 899999888766310 0122 2 36778999999998876
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-09 Score=96.42 Aligned_cols=269 Identities=7% Similarity=-0.071 Sum_probs=150.2
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe----------cCCcEEEEccCCCCCccccccccccccc
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
.|.++|.+ +++.+..+..+.. + .+.++||+++++++. .++.|.+||..+......+..+.
T Consensus 47 ~vsvID~~--t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~----- 116 (368)
T 1mda_H 47 ENWVSCAG--CGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD----- 116 (368)
T ss_dssp EEEEEETT--TTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT-----
T ss_pred eEEEEECC--CCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC-----
Confidence 77788874 5777777765543 3 799999998888876 25889999998544433322110
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEE--EEccCCCceeeecCCCCeeEEEEcCCCC-
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTI--WDVAQGLGTPIRRGFGGLSILKWSPTGD- 267 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~v--wd~~~~~~~~~~~~~~~v~~~~~sp~g~- 267 (445)
.-+.........++++|||++++++... ...+.+ +|+.+ ...+ .-.+. +.+.|+++
T Consensus 117 --------------~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~~---~~~~p~g~~ 176 (368)
T 1mda_H 117 --------------APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSASC---FHIHPGAAA 176 (368)
T ss_dssp --------------SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSSC---CCCEEEETT
T ss_pred --------------ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCCc---eEEccCCCe
Confidence 0000001245689999999999998753 247888 99877 2222 11111 12335543
Q ss_pred EEEEEecCCeEEEEeCCC-----CCccc-----ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 268 YFFAAKFDGTFYLWETNT-----WTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~-----~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+++.+.|+.+.+.|+.+ ++... +.....+. . ++++..++.... +.+..+++....... ...+
T Consensus 177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--~~V~viD~~~~~~~v-~~~~ 249 (368)
T 1mda_H 177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--SSILQGDIPAAGATM-KAAI 249 (368)
T ss_dssp EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS--SCCEEEECCSSCCEE-ECCC
T ss_pred EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC--CEEEEEECCCCcceE-EEEE
Confidence 445566788888888876 33221 11112222 3 455555444433 456666653211000 0000
Q ss_pred CccccccccccCCC--ccceEEeCCCCCEEEEEEc-C-CC-cccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe
Q 013338 338 PVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-G-GD-DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412 (445)
Q Consensus 338 ~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~-d-~~-d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s 412 (445)
..... .....+.. +...++++||+++++++.. . +. -..++.+.++|+.+++.+...++.. ....++|+
T Consensus 250 ~~~~~-~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s 322 (368)
T 1mda_H 250 DGNES-GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAA 322 (368)
T ss_dssp CSSCT-HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEEC
T ss_pred Eeccc-cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEEC
Confidence 00000 00000100 2333789999999887654 2 10 0000345599999988764333321 46799999
Q ss_pred ecCCCCCCCeEEEEe-cCeeeEeeeee
Q 013338 413 FHDKFKQGPLLSVCW-SSGFCCTYPLI 438 (445)
Q Consensus 413 pdg~~~~~~~l~~~~-~~G~v~~~~~~ 438 (445)
|||+. ++..+. .++.|.++++.
T Consensus 323 ~Dg~~----l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 323 QDGAS----DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp CSSSC----EEEEEETTTTEEEEEESS
T ss_pred CCCCE----EEEEccCCCCeEEEEECC
Confidence 99985 344555 68999998864
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-08 Score=83.56 Aligned_cols=193 Identities=10% Similarity=-0.037 Sum_probs=122.6
Q ss_pred CeeEEEECcCCCcEEEEec---CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 146 DVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
....++|++++ .|+.++. ++.|.++|+.+.+....+.. ..+ .....+++
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------------------~~~--~fgeGi~~-- 73 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-----------------------DDS--YFGEGLTL-- 73 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-----------------------CTT--CCEEEEEE--
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-----------------------CCC--cceEEEEE--
Confidence 36799999984 5655543 47999999985443322211 111 12234444
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---C
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS---G 296 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~---~ 296 (445)
+++.|+.+...++.+.++|..+.+........ .-....+++||+.|+++..++.|.++|..+.+.. .+. ... .
T Consensus 74 ~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 74 LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence 46678777776689999999988775544333 1123446668888887778899999999998763 222 111 2
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccC-----------C---CccceEEeCCCC
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-----------S---QGIEKIAWDASG 362 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~v~~~~~sp~g 362 (445)
.++.+.|. ++ .+++....+..+..++.... +.+..+.- + ...+.++|+|++
T Consensus 153 ~~nele~~-dg-~lyvn~~~~~~V~vID~~tg-------------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 153 RLNELEYI-NG-EVWANIWQTDCIARISAKDG-------------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEEETTTC-------------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred cceeEEEE-CC-EEEEecCCCCeEEEEECCCC-------------cEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 36788888 66 55556555667777775422 22222211 0 145899999999
Q ss_pred CEEEEEEcCCCcccceEEEEEEccC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+.|++++... +.+++.++..
T Consensus 218 ~~lfVTgk~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 218 KRIFVTGKLW-----PKLFEIKLHL 237 (266)
T ss_dssp TEEEEEETTC-----SEEEEEEEEE
T ss_pred CEEEEECCCC-----CeEEEEEEec
Confidence 8888776543 6788888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.1e-07 Score=77.38 Aligned_cols=219 Identities=6% Similarity=-0.046 Sum_probs=135.2
Q ss_pred CeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.+..++|++++..|..+. ..+.|..++.+. .....+..........++++++++.++.+.. .+.|.+++.+...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~- 112 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG---GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ- 112 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSS---CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCC---CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-
Confidence 467899999766665554 577899998753 2223332222356889999998777777665 4788888876211
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec--CCeEEEEEccCCCceeee-cCCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIR-RGFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~g~v~vwd~~~~~~~~~~-~~~~ 255 (445)
...+ .... ......++++|++..|+.+... .+.|..+++.......+. ....
T Consensus 113 ~~~~------------------------~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~ 167 (267)
T 1npe_A 113 RRVL------------------------FDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167 (267)
T ss_dssp CEEE------------------------ECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred EEEE------------------------EECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCC
Confidence 1110 1111 1456899999977777666543 358888888754443333 2335
Q ss_pred CeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
....++++|+++.|..+ ...+.|.++|..+.....+.........++. ++..++++......+..++..
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~-------- 237 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLA-------- 237 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETT--------
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCC--------
Confidence 68899999987776554 4567999999986544333222334556665 456777676555666555532
Q ss_pred cccCccccccccccCCC--ccceEEeCCCCC
Q 013338 335 HLLPVDLPDIVSLTGSQ--GIEKIAWDASGE 363 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~ 363 (445)
+++.+..+.... ....+++.|++.
T Consensus 238 -----~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 -----ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -----TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred -----CCCceEEEccccccccceeeecCccC
Confidence 233344443222 467788888764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-07 Score=81.56 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=128.1
Q ss_pred eeEEEEccCCCEEEEEEC--CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
...++|++|+.+.++.+. ++.|+++|+. +++....+..+.......+++. +++++.+.. ++.+.++|..+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~--tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~-- 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQ--TGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL-- 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETT--TCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT--
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECC--CCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC--
Confidence 468999999765555443 5789999985 5766666543222223345554 456666664 589999998732
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---C--
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---G-- 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~-- 253 (445)
..+..+.... .. ...+++||+.++++..+ +.|.++|..+.+...... .
T Consensus 97 -----------------------~v~~~i~~g~-~~--g~glt~Dg~~l~vs~gs-~~l~viD~~t~~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 97 -----------------------SNIKNFTHQM-KD--GWGLATDGKILYGSDGT-SILYEIDPHTFKLIKKHNVKYNGH 149 (266)
T ss_dssp -----------------------EEEEEEECCS-SS--CCEEEECSSSEEEECSS-SEEEEECTTTCCEEEEEECEETTE
T ss_pred -----------------------cEEEEEECCC-CC--eEEEEECCCEEEEECCC-CeEEEEECCCCcEEEEEEECCCCc
Confidence 2333332211 11 23355688888887755 699999999877643322 1
Q ss_pred -CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC--------------CCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 254 -FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--------------TSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 254 -~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
-..++.+.|. +|+..+....++.|.+.|..+++...... .....+.++|+|+++.+++++....
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 1246788888 77555555568899999999998732111 1135689999999999998888888
Q ss_pred eEEEEEeccC
Q 013338 319 TLGSIHFASK 328 (445)
Q Consensus 319 ~~~~~~~~~~ 328 (445)
.+..+++...
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8899887643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-08 Score=87.11 Aligned_cols=207 Identities=8% Similarity=-0.045 Sum_probs=126.0
Q ss_pred CCeeEEEEccCCCEEEEEEC-----CCeEEEEEccCCCCcceeEEecC-----CCCCeeEEEECcCCCcEEEEe----cC
Q 013338 100 VDLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVG----CK 165 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~-----d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~l~~spd~~~l~~~~----~d 165 (445)
..+..++++++|+++++-.. ++.|.+||+. +++....+... +...+..++++++++.++++. .+
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~--tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL--NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT--TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC--CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 36899999999987775443 5788899974 45544444321 224568999998766665554 35
Q ss_pred CcEEEEccCCCCCcccccccc--cccc-ccccCCCCCceEEEEeeccc-----CCCceeEEEECCCCCeEEEEEecCCeE
Q 013338 166 GGICIWAPSYPGNAASVRSGA--ASFL-GALSRGPGTRWTLVDFLRSQ-----NGEQITALSWGPDGRYLASASYESSSF 237 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~g~v 237 (445)
+.|.+||+........+ .++ ..+. ..+.. ++. .+...... -...+..++|+|+|+.|+++......+
T Consensus 145 ~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~--~g~--~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVL-QGYPGIAPEDIDLVI--DGV--PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp CEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEE--TTE--ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred CeEEEEECCCCCEEEEe-cCCCcccccccceeE--CCE--EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence 89999998744322221 110 0000 00000 000 00000000 013468899999999999887774455
Q ss_pred EEEEcc---CCCc--------eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC--CCCCeeEEEEC
Q 013338 238 TIWDVA---QGLG--------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWD 304 (445)
Q Consensus 238 ~vwd~~---~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~v~~~~~s 304 (445)
..++.. .+.. .....+......++++++|+.+++...++.|.+||..+++...+.. ....+.+++|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 555532 1110 1122334567789999999999998889999999995555533322 23468899999
Q ss_pred CCCCeEEEE
Q 013338 305 PEGRMILLA 313 (445)
Q Consensus 305 p~~~~l~~~ 313 (445)
+++++++++
T Consensus 300 ~~g~l~v~~ 308 (343)
T 2qe8_A 300 SDGYLYFDC 308 (343)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEe
Confidence 998876654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=6.2e-07 Score=80.87 Aligned_cols=186 Identities=7% Similarity=-0.001 Sum_probs=115.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecC-------------------CCCCeeEEEECcCCCcEEEE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-------------------SQRDVKVLEWRPNGGRSLSV 162 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-------------------~~~~v~~l~~spd~~~l~~~ 162 (445)
..+++|+++|+++.++..++.|..|+... +. ...+... ....+..+++.++++.|+++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPN--SG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTT--TC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCC--Cc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 45789999999777888889998887642 22 2222110 01357899999833677777
Q ss_pred ecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEe---------
Q 013338 163 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASY--------- 232 (445)
Q Consensus 163 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~--------- 232 (445)
...+.+..++.... ....+ .....+........+++.+ +|+..++-..
T Consensus 98 d~~~~i~~~d~~~g-~~~~~---------------------~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 98 DCYYHLSVVGSEGG-HATQL---------------------ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp ETTTEEEEECTTCE-ECEEE---------------------ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ECCCCEEEEeCCCC-EEEEe---------------------cccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 66666777776521 11111 0011111113567899999 8876655322
Q ss_pred -------cCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCc---ccccCCCCCeeEE
Q 013338 233 -------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTS---EPWSSTSGFVTGA 301 (445)
Q Consensus 233 -------d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~---~~~~~~~~~v~~~ 301 (445)
..|.|..||..+++...+.........++|+|+|++|.++ ...+.|++|++..... ..+....+ ...+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi 234 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI 234 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe
Confidence 1157888888777554443333556789999999977655 5568999999886332 22212223 7889
Q ss_pred EECCCCCeEEEE
Q 013338 302 TWDPEGRMILLA 313 (445)
Q Consensus 302 ~~sp~~~~l~~~ 313 (445)
++.++|++.++.
T Consensus 235 ~~d~~G~l~va~ 246 (322)
T 2fp8_A 235 KRNADGHFWVSS 246 (322)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 999999866544
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-06 Score=86.53 Aligned_cols=279 Identities=12% Similarity=0.070 Sum_probs=151.5
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecC-CCCCeeEEEECc---CCCcEEEEec------CCcEEEEccCCCCCc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSD-SQRDVKVLEWRP---NGGRSLSVGC------KGGICIWAPSYPGNA 179 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~l~~sp---d~~~l~~~~~------dg~i~vw~~~~~~~~ 179 (445)
++..|++++.|+.+..+|.. +|+.+-..... +......+..+| + +.++++.. ++.|..||..+++..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~--TG~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 196 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAK--TGQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEA 196 (689)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ECCEEEEEccCCEEEEEECC--CCCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEE
Confidence 35677788899999988874 57666554332 211111122222 3 45555432 588999998855433
Q ss_pred cccccccccccccc---------cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC---------------
Q 013338 180 ASVRSGAASFLGAL---------SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--------------- 235 (445)
Q Consensus 180 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--------------- 235 (445)
-........+.... ..-....|.. ..+. ......++++|++..++++..+ |
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~---~~~g-~~~w~~~~~d~~~~~vy~~~~~-g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE---QGGG-GTAWDSFAYDPELNLLYIGVGN-GSLWDPKWRSQAKGDN 271 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH---HCEE-CCCCSCEEEETTTTEEEEECCC-EESSCHHHHHTTCSCC
T ss_pred EEecccCCCcccccccccccccccccCCceeee---cCCC-CccccceeEcCCCCEEEEeCCC-CCccccCCCCCCCCCc
Confidence 22211100000000 0000001100 0011 1122367888988888888766 4
Q ss_pred ----eEEEEEccCCCceeeec---CC-------CCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCCccc---ccC--
Q 013338 236 ----SFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSEP---WSS-- 293 (445)
Q Consensus 236 ----~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~~~---~~~-- 293 (445)
.|..+|..+|+...... +. ..+.......+|+ .++.++.+|.++++|.++++... +..
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 351 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS 351 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence 39999999998764332 21 1122222223565 78889999999999999998631 100
Q ss_pred ------------------------CC-----------CCeeEEEECCCCCeEEEEEcCCceE------------------
Q 013338 294 ------------------------TS-----------GFVTGATWDPEGRMILLAFAGSLTL------------------ 320 (445)
Q Consensus 294 ------------------------~~-----------~~v~~~~~sp~~~~l~~~~~~~~~~------------------ 320 (445)
.. ..-..++|+|+...+++........
T Consensus 352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence 00 0112378899988888663321111
Q ss_pred -----------------------EEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 321 -----------------------GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 321 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
+.+..++. .+++.+..+..+..+..-.+...+.++++++.|
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~----------~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~d------ 495 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP----------VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSAD------ 495 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEET----------TTTEEEEEEEESSSCCCCEEEETTTEEEEECTT------
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEEC----------CCCCeEeEccCCCCccCccceECCCEEEEECCC------
Confidence 11111111 123333333333333444556677888888777
Q ss_pred eEEEEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCC
Q 013338 378 GLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 417 (445)
+.|+.||.++|+++- .++ ++.....-+.|+.||+.
T Consensus 496 g~l~a~D~~tG~~lw-----~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 496 GRVIAYAADTGEKLW-----EQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp SEEEEEETTTCCEEE-----EEECSSCCCSCCEEEEETTEE
T ss_pred CcEEEEECCCCccce-----eeeCCCCcccCceEEEECCEE
Confidence 999999999998873 233 23333456788888873
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-06 Score=85.38 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=106.8
Q ss_pred CeeEEEEc-cCCCEEEEEEC-CC----eEEEEEccCCCC-cceeEEecCCCCCeeEEEECcCCCcEEEEecC-----CcE
Q 013338 101 DLQGVSWH-QHKHIVAFISG-ST----QVIVRDYEDSEG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGI 168 (445)
Q Consensus 101 ~v~~~~~s-p~g~~la~~~~-d~----~i~iw~~~~~~~-~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-----g~i 168 (445)
.+...+|| |||++||.+.. +| .|++++++. + +.+.... .....+++|+|||+.|+.+..+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~--g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD--PSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC--TTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC--CCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57889999 99999997653 22 488888854 4 3211100 1123578999999888888765 245
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC--CeEEEEEccCCC
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL 246 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--g~v~vwd~~~~~ 246 (445)
.++++........ ++ +..........+.|||||++|+..+... ..|.++|+.++.
T Consensus 250 ~~~~lgt~~~~~~---------------------lv--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 250 WRHVMGKLQSEDV---------------------CL--YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EEEETTSCGGGCE---------------------EE--EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEEECCCCchhcE---------------------EE--EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 5566542211100 11 1111113456789999999998776431 368888988752
Q ss_pred --c--eeeecC-CCCeeEEEEcCCCCEEE-EEecC----CeEEEEeCCCC-Cccc-ccCCCCC--eeEEEECCCCCeEEE
Q 013338 247 --G--TPIRRG-FGGLSILKWSPTGDYFF-AAKFD----GTFYLWETNTW-TSEP-WSSTSGF--VTGATWDPEGRMILL 312 (445)
Q Consensus 247 --~--~~~~~~-~~~v~~~~~sp~g~~l~-~~~~d----g~v~iwd~~~~-~~~~-~~~~~~~--v~~~~~sp~~~~l~~ 312 (445)
. ..+... .....++.|+. |+.|+ ....+ ..|..+|+.+. +... +..+... +..+.+ .+..|++
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~ 383 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVV 383 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEE
T ss_pred CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEE
Confidence 3 333332 34455566553 55554 44333 36788888753 3344 4444443 344444 4566665
Q ss_pred EEcCCc
Q 013338 313 AFAGSL 318 (445)
Q Consensus 313 ~~~~~~ 318 (445)
....++
T Consensus 384 ~~~~~g 389 (751)
T 2xe4_A 384 AGRRAG 389 (751)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 544444
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-06 Score=75.06 Aligned_cols=261 Identities=12% Similarity=0.079 Sum_probs=141.3
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DG 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 224 (445)
...+++|.+++..+++...++.|..|+..... ...+.............+... ...... ...+..+++++ ++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~-----~~~~~~-~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTD-----AEKRPL-CGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCC-----GGGHHH-HCCEEEEEEETTTT
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccc-----hhcccc-CCCCceEEEcCCCC
Confidence 45678999996657777677899999876221 111100000000000000000 000000 13578899998 55
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcC-CCCEEEEEec-----------------CCeEEEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSP-TGDYFFAAKF-----------------DGTFYLW 281 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp-~g~~l~~~~~-----------------dg~v~iw 281 (445)
+ |+++... +.|..+|..++....+... ......+++.+ +|+..++-.. ++.|..|
T Consensus 93 ~-l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 Q-LYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp E-EEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred c-EEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 4 5555555 3688888776644333211 24578899999 9987665432 3679999
Q ss_pred eCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCC
Q 013338 282 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS 361 (445)
Q Consensus 282 d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 361 (445)
|..+++...+.......+.++|+|+++.|+++......+..+.+...... ....+..+. ....++++++
T Consensus 171 d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~--------~~~~~~~~~---gP~gi~~d~~ 239 (322)
T 2fp8_A 171 DPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG--------TAEVLVKIP---NPGNIKRNAD 239 (322)
T ss_dssp ETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--------CEEEEEECS---SEEEEEECTT
T ss_pred eCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--------ccceEEeCC---CCCCeEECCC
Confidence 98877654333222345679999999988877555556666654321000 001111111 1677899999
Q ss_pred CCEEEEEEcCCCc----ccceEEEEEEccCCCeeeeeeeeeeeCC----CCCCCceeEeecCCCCCCCeEEEEecCeeeE
Q 013338 362 GERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC 433 (445)
Q Consensus 362 g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~ 433 (445)
|++.++....... +..+.|..+|.. ++.+. .+... ...++.+++ .+| .+......+++|.
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~-----~~~~~~g~~~~~~~~~~~-~~g-----~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILE-----VIPLPPPFAGEHFEQIQE-HDG-----LLYIGTLFHGSVG 307 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEE-----EEECCTTTTTSCCCEEEE-ETT-----EEEEECSSCSEEE
T ss_pred CCEEEEecCcccccccCCCccEEEEECCC-CCEEE-----EEECCCCCccccceEEEE-eCC-----EEEEeecCCCceE
Confidence 9876665430000 001678888864 44432 23322 234566665 333 3444455678888
Q ss_pred eeeee
Q 013338 434 TYPLI 438 (445)
Q Consensus 434 ~~~~~ 438 (445)
.|++.
T Consensus 308 ~~~~~ 312 (322)
T 2fp8_A 308 ILVYD 312 (322)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 88754
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.1e-05 Score=70.39 Aligned_cols=238 Identities=8% Similarity=-0.068 Sum_probs=143.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA 179 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~ 179 (445)
...|.+..+++ +|+.+ ....|+..+++ +.....+.. ....+..++|++..+.|+.+.. .+.|..+++......
T Consensus 35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~---g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFA-NRIDIRQVLPH---RSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp SSCEEESSSCC-EEEEE-CBSCEEEECTT---SCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcccccccCc-eeEee-cccceEEEeCC---CCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 34566666643 44444 34457666664 333333322 3445889999987677777664 478888887632211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~ 258 (445)
.+ +... ......+++++.+..|+.+....+.|.+.++.......+.. ......
T Consensus 109 -~~------------------------~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~ 162 (349)
T 3v64_C 109 -EV------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR 162 (349)
T ss_dssp -EE------------------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred -EE------------------------EeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence 11 1111 13557889988666666665544689999988665544443 346789
Q ss_pred EEEEcCCCCEEEEE-ecC-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 259 ILKWSPTGDYFFAA-KFD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 259 ~~~~sp~g~~l~~~-~~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.++++|.+..|..+ ... +.|+.++++......+. ..-...+.++++|++..|+.+-.....+..+++..
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-------- 234 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-------- 234 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC--------
Confidence 99999976665544 444 78999998875554433 23445789999998888888876666677766532
Q ss_pred ccCccccccccc-cC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 336 LLPVDLPDIVSL-TG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 336 ~~~~~~~~~~~~-~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.....+ .. ......+++ ++..|+.+.... +.|..++..+++..
T Consensus 235 ------~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-----~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 235 ------SHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-----KSINSANKFTGKNQ 279 (349)
T ss_dssp ------CSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred ------CceEEEEeCCCCCceEEEE--ECCEEEEecCCC-----CeEEEEEccCCCcc
Confidence 111111 11 114567777 234555554332 78888886555543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-06 Score=84.37 Aligned_cols=278 Identities=12% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC----CCeeE-EEECcCCCcEEEEec------CCcEEEEccCCCCC
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ----RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGN 178 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~-l~~spd~~~l~~~~~------dg~i~vw~~~~~~~ 178 (445)
++..|++++.|+.+..+|.. +|+.+........ ..+.+ ... .++.+++++. ++.|..||..+++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~--tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA--TGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGER 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCEEEEEECC--CCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcE
Confidence 45677788889999888874 5776655533201 11111 111 1345655543 68899999885543
Q ss_pred cccccccccccccc----------ccCCC-CCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-------------
Q 013338 179 AASVRSGAASFLGA----------LSRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------------- 234 (445)
Q Consensus 179 ~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------- 234 (445)
.-............ ..+.. ...|.. .+. ......++++|++..++.+..+.
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~----~~g-~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEA----GGG-GTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHH----CEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEe----CCC-cccccceeEcCCCCEEEEECCCCccccCCCCCccCC
Confidence 32222111000000 00000 000000 011 12234678889888888776551
Q ss_pred -----CeEEEEEccCCCceeeec---CC-------CCeeEEEEcCCC---CEEEEEecCCeEEEEeCCCCCccc---ccC
Q 013338 235 -----SSFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTSEP---WSS 293 (445)
Q Consensus 235 -----g~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~~~---~~~ 293 (445)
+.|..+|..+++...... +. ....-+....+| +.++.++.+|.|+++|.++++... +..
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc
Confidence 149999999998754432 21 122223333477 678899999999999999998731 110
Q ss_pred C---------CCCe------------------------eEEEECCCCCeEEEEEcCCce---------------------
Q 013338 294 T---------SGFV------------------------TGATWDPEGRMILLAFAGSLT--------------------- 319 (445)
Q Consensus 294 ~---------~~~v------------------------~~~~~sp~~~~l~~~~~~~~~--------------------- 319 (445)
. ...+ ..++|+|++..+++....-..
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 0 0000 257889998888765431110
Q ss_pred ------------------EEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEE
Q 013338 320 ------------------LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA 381 (445)
Q Consensus 320 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~ 381 (445)
.+.+..++.. +++.+..+.....+....+..++..+++++.+ +.++
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~----------tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~d------g~l~ 501 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPV----------AQKAAWSVEHVSPWNGGTLTTAGNVVFQGTAD------GRLV 501 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETT----------TTEEEEEEEESSSCCCCEEEETTTEEEEECTT------SEEE
T ss_pred cccccccccccccCCCCCccEEEEEeCC----------CCcEEeecCCCCCCcCcceEeCCCEEEEECCC------CcEE
Confidence 0112221111 22333333322244555566778888888766 9999
Q ss_pred EEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCC
Q 013338 382 IYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 382 vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~ 417 (445)
+||.++++.+. .+. ++......+.|+++|+.
T Consensus 502 a~D~~tG~~lw-----~~~~~~~~~~~p~~y~~~G~~ 533 (677)
T 1kb0_A 502 AYHAATGEKLW-----EAPTGTGVVAAPSTYMVDGRQ 533 (677)
T ss_dssp EEETTTCCEEE-----EEECSSCCCSCCEEEEETTEE
T ss_pred EEECCCCceee-----eeeCCCCcccCCEEEEeCCEE
Confidence 99999998873 222 33334456777788864
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.2e-06 Score=72.92 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=120.7
Q ss_pred eeEEEEccCCCEEEEEECCC--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
...+.|+ ++.++.+.+.+| .|+++|++ +++.+..+.. ..........+++++++.... ++.+.+||..+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~--Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIE--SGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTT--TCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECC--CCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 4678888 777777777666 78888874 5776666543 334444333444556666654 68999999884333
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CC-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF- 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~- 254 (445)
+.++.... .-..++ +|++.|+.+... +.|.++|..+.+...... ..
T Consensus 120 -------------------------~~ti~~~~--eG~glt--~dg~~L~~SdGs-~~i~~iDp~T~~v~~~I~V~~~g~ 169 (262)
T 3nol_A 120 -------------------------VRSFNYDG--EGWGLT--HNDQYLIMSDGT-PVLRFLDPESLTPVRTITVTAHGE 169 (262)
T ss_dssp -------------------------EEEEECSS--CCCCEE--ECSSCEEECCSS-SEEEEECTTTCSEEEEEECEETTE
T ss_pred -------------------------EEEEECCC--CceEEe--cCCCEEEEECCC-CeEEEEcCCCCeEEEEEEeccCCc
Confidence 33333221 112333 577777777655 589999999887643321 11
Q ss_pred --CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-------------CCCCCeeEEEECCCCCeEEEEEcCCce
Q 013338 255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------------STSGFVTGATWDPEGRMILLAFAGSLT 319 (445)
Q Consensus 255 --~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~v~~~~~sp~~~~l~~~~~~~~~ 319 (445)
..++.+.|. +|+..+....++.|.+.|.++++..... ......+.++|+|+++.|++++..=..
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~ 248 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPK 248 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence 445668887 7766666667889999999999873211 112356899999999988877654444
Q ss_pred EEEEEe
Q 013338 320 LGSIHF 325 (445)
Q Consensus 320 ~~~~~~ 325 (445)
++.+++
T Consensus 249 ~~ev~~ 254 (262)
T 3nol_A 249 VFEITL 254 (262)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.1e-05 Score=71.50 Aligned_cols=236 Identities=8% Similarity=-0.062 Sum_probs=141.3
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS 181 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~ 181 (445)
.|.+..+. .+|+.+ ....|+.++++. .. ...+.. ....+..++|++.++.|+.+.. .+.|..+++.... ...
T Consensus 80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~--~~-~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~ 152 (386)
T 3v65_B 80 SCKALGPE-PVLLFA-NRIDIRQVLPHR--SE-YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEE 152 (386)
T ss_dssp CEEECSSC-CEEEEE-CBSCEEEECTTS--CC-CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEE
T ss_pred eECCcccc-ceeEee-cCccceeeccCC--Cc-EEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEE
Confidence 45555553 344444 345677777642 22 223322 3455889999987677777664 4788888876221 111
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEE
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSIL 260 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~ 260 (445)
+ +... ......+++++.+..|+.+....+.|.+.++.......+.. .......+
T Consensus 153 ~------------------------~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi 207 (386)
T 3v65_B 153 V------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207 (386)
T ss_dssp E------------------------ECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred E------------------------EeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence 1 1111 13457788988766676665544689999887665544443 34678999
Q ss_pred EEcCCCCEEEEEe-cC-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 261 KWSPTGDYFFAAK-FD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 261 ~~sp~g~~l~~~~-~d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
+++|.+..|..+. .. +.|+.++++......+. ..-...+.++|+|++..|+.+-.....+..+++..
T Consensus 208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG---------- 277 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG---------- 277 (386)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS----------
T ss_pred EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----------
Confidence 9999777665554 34 68999998875543332 23345789999998888888866666666665421
Q ss_pred Ccccccccccc-C-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 338 PVDLPDIVSLT-G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 338 ~~~~~~~~~~~-~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.....+. . ......+++ ..+ .|+.+...+ +.|..++..+++..
T Consensus 278 ----~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~-----~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 278 ----SHRKAVISQGLPHPFAITV-FED-SLYWTDWHT-----KSINSANKFTGKNQ 322 (386)
T ss_dssp ----CSCEEEECSSCSSEEEEEE-ETT-EEEEEETTT-----TEEEEEETTTCCSC
T ss_pred ----CeeEEEEECCCCCceEEEE-ECC-EEEEeeCCC-----CeEEEEECCCCcce
Confidence 1111111 1 114567777 333 455444332 78888886665544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-06 Score=79.16 Aligned_cols=265 Identities=9% Similarity=-0.027 Sum_probs=148.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+.++...++|.+.+ ++.+ +..+|. +++....... .........+. + +.+++++.++.+..+|.. ....
T Consensus 61 ~~~~~~~~~~g~l~v-~t~~--l~~~d~---~g~~~~~~~~-~~~~~~~~~~~-~-~~l~v~t~~~~l~~~d~~-g~~~- 129 (330)
T 3hxj_A 61 IECRPSIGKDGTIYF-GSDK--VYAINP---DGTEKWRFDT-KKAIVSDFTIF-E-DILYVTSMDGHLYAINTD-GTEK- 129 (330)
T ss_dssp EEECCEETTTTEECC-SSCE--EEEECC---CGGGGGGSCC------CCEEEE-T-TEEEEECTTSEEEEECTT-SCEE-
T ss_pred cccceEEecCCcEEE-ecCc--EEEECC---CCcEEEEEEC-CCCcccCceEE-C-CEEEEEecCCEEEEEcCC-CCEE-
Confidence 356777777776554 3333 666663 3443322211 11222233333 3 677777778889999876 2211
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCCeeE
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSI 259 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~ 259 (445)
+. .... ...+.++...+++. +..++.+ +.|..+|.. ++.... ......+.+
T Consensus 130 -----------------------~~-~~~~-~~~~~~~~~~~~g~-l~vgt~~-~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 130 -----------------------WR-FKTK-KAIYATPIVSEDGT-IYVGSND-NYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp -----------------------EE-EECS-SCCCSCCEECTTSC-EEEECTT-SEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred -----------------------EE-EcCC-CceeeeeEEcCCCE-EEEEcCC-CEEEEECCC-CCEeEEEecCCCceee
Confidence 11 1111 13456667777776 5556666 699999988 655433 233456777
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccC
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (445)
+...+++..++ ++ +.|..+| .+++. .........+.++...++|...+.+ . ++.+..++ .
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~-~~gl~~~~---~---------- 242 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTS-L-DGHLYAIN---P---------- 242 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEE-T-TTEEEEEC---T----------
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEc-C-CCeEEEEC---C----------
Confidence 88877777544 44 7899999 55554 3333344568888899888766543 2 22233332 1
Q ss_pred ccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 339 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 339 ~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+...+..+.... .+..+.+.++|. |..++.+ +.|..+|. +++... .+......+.++...++|+
T Consensus 243 -~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~------ggl~~~d~-~g~~~~-----~~~~~~~~~~~~~~d~~g~- 307 (330)
T 3hxj_A 243 -DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYD------GHLYAINP-DGTEKW-----NFETGSWIIATPVIDENGT- 307 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTSC-EEEECTT------CEEEEECT-TSCEEE-----EEECSSCCCSCCEECTTCC-
T ss_pred -CCCEeEEeeCCCCccccceEcCCCe-EEEecCC------CCEEEECC-CCcEEE-----EEEcCCccccceEEcCCCE-
Confidence 122222222222 345566776775 4455555 67999996 555442 2223345567777767765
Q ss_pred CCCCeEEEEecCeeeEeeeeeeeccC
Q 013338 418 KQGPLLSVCWSSGFCCTYPLIFRSHL 443 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~~~~~~~ 443 (445)
|-++..+|.+.+.+....++-
T Consensus 308 -----l~~gt~~G~~~~~~~~~~~~~ 328 (330)
T 3hxj_A 308 -----IYFGTRNGKFYALFNLEHHHH 328 (330)
T ss_dssp -----EEEECTTSCEEEEEC------
T ss_pred -----EEEEcCCCeEEEEeccccccc
Confidence 567889999999887765543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-05 Score=71.77 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=129.4
Q ss_pred CCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 145 RDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
.....++|++++. |+++. .++.|..|+... ... ..+.. ...+..++++++
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~~~------------------------~~~~~--~~~p~gia~~~d 82 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQQ------------------------IHATV--EGKVSGLAFTSN 82 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CEE------------------------EEEEC--SSEEEEEEECTT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCC--ceE------------------------EEEeC--CCCceeEEEcCC
Confidence 4577899999865 55555 568888888652 111 01111 246889999999
Q ss_pred CCeEEEEEecC-CeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc----------
Q 013338 224 GRYLASASYES-SSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---------- 290 (445)
Q Consensus 224 ~~~l~~~~~d~-g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---------- 290 (445)
|+++++....+ ..|..+|..+++...+... ......++..+++..+++-..++.|+++|..+++...
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 98655443321 2477777777766544332 2334556655555545554468899999987642110
Q ss_pred -ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEE
Q 013338 291 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 369 (445)
Q Consensus 291 -~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s 369 (445)
....-...+.+ ++++++|+++......+..+++... .. ......+........++++++|+++++..
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~---------~~~~~~~~~~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DK---------PGEPEIFVEQTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SC---------BCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CC---------CCccEEEeccCCCCCeEECCCCCEEEEeC
Confidence 01111234555 8899988888777677777776321 00 00011111112468899999998655543
Q ss_pred cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe---ecCCC
Q 013338 370 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS---FHDKF 417 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s---pdg~~ 417 (445)
.. +.|.+++.. ++... +..+......+++++|. ||++.
T Consensus 231 ~~------~~V~~~~~~-G~~~~---~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 231 IY------NSVVRIAPD-RSTTI---IAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp TT------CCEEEECTT-CCEEE---EECGGGTCTTEEEEEECCSTTTTTE
T ss_pred CC------CeEEEECCC-CCEEE---EeecccccCCceEEEEecccCCCCE
Confidence 33 789999975 54421 11122223457889998 77653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.5e-06 Score=69.36 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=117.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCcc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA 180 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~ 180 (445)
...+.|+ ++.+..+.+.+|.|+++|++ +++.+..+ ....----.+++. +++++... .++.+.+||..+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~--Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl---- 126 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLE--SAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPP---- 126 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSS--CSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTT----
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECC--CCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcC----
Confidence 4577787 46666777788899998885 46666655 2222112335554 45665554 4699999998832
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee---cCC---
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGF--- 254 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~---~~~--- 254 (445)
..+.++.... .-..++ +|++.|+.+..+ +.|.++|..+.+..... ...
T Consensus 127 ---------------------~~~~ti~~~~--eGwGLt--~Dg~~L~vSdGs-~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 127 ---------------------QRERTTRYSG--EGWGLC--YWNGKLVRSDGG-TMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp ---------------------EEEEEEECSS--CCCCEE--EETTEEEEECSS-SEEEEECTTTCCEEEEEECEETTEEC
T ss_pred ---------------------cEEEEEeCCC--ceeEEe--cCCCEEEEECCC-CEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 2334443321 123444 567888777666 59999999988764432 221
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--------------CCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
..++.+.|. +|+..+....++.|.+.|.++++..... ......+.|+|+|+++.|++++..=..+
T Consensus 181 ~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 181 ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEE
T ss_pred ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCce
Confidence 355778887 7765655556889999999999862211 1224578999999888777764432334
Q ss_pred EEEE
Q 013338 321 GSIH 324 (445)
Q Consensus 321 ~~~~ 324 (445)
+.++
T Consensus 260 ~ev~ 263 (268)
T 3nok_A 260 FEVR 263 (268)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3.6e-06 Score=71.67 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=110.7
Q ss_pred CeeEEEECcCCCcEEEEecCC--cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
-...|.|+ ++..+.+++.+| .|+++|+.+.+....+ ... .........++
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~-------------------------~l~--~~~FgeGit~~ 95 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI-------------------------ELG--KRYFGEGISDW 95 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE-------------------------ECC--TTCCEEEEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE-------------------------ecC--CccceeEEEEe
Confidence 34889998 544445555555 8999999854433222 111 23333333345
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---CC
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS---GF 297 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~---~~ 297 (445)
++.|+.....++.+.+||..+.+..........-..++ ++++.|+.+..++.|+++|..+.+.. .+. ... ..
T Consensus 96 g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 96 KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE 173 (262)
T ss_dssp TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence 66777777655799999999988766555433323344 57888877777889999999998863 222 112 33
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-c---ccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-S---LTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
++.+.|. +|+ |.+..-.+..+..|+...... ...++ ...+. . ..... ..+.+||+|+++.|++.+..
T Consensus 174 lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V---~~~Id--~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 174 LNELEWV-DGE-IFANVWQTNKIVRIDPETGKV---TGIID--LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEEE-TTE-EEEEETTSSEEEEECTTTCBE---EEEEE--CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEE-CCE-EEEEEccCCeEEEEECCCCcE---EEEEE--CCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5567776 665 555555555555555322110 00110 00000 0 00111 56899999999988888764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-05 Score=69.15 Aligned_cols=196 Identities=12% Similarity=-0.038 Sum_probs=117.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC----CCceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++++..|+.+....+.|..+++.. .....+.. ....+..+++++.+..| ++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 56789999998777777766557999999876 22333332 23567889998765555 45456789999999875
Q ss_pred Cccccc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccC--CCccceEEeCCCC
Q 013338 287 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g 362 (445)
....+. ........++++|.+..|+.+.... ..+..+.+ ++.....+.. -...+.++++|++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~--------------dG~~~~~~~~~~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 175 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC--------------CCCCeEEEEECCCCCceEEEEeccC
Confidence 543333 2345678999999877777664432 44554443 2222222211 1257899999998
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.|+.+.... +.|..+|++...... +............+++. + +.++-..|.+++|..++
T Consensus 176 ~~lY~~D~~~-----~~I~~~d~dg~~~~~---~~~~~~~~~~P~giav~--~----~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 176 GRLYWVDSKL-----HSISSIDVNGGNRKT---ILEDEKRLAHPFSLAVF--E----DKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCSCEE---EEECTTTTSSEEEEEEE--T----TEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCC-----CeEEEEecCCCceEE---EeecCCccCCcEEEEEE--C----CEEEEEECCCCeEEEEe
Confidence 8888775442 789999997543321 10111112233456663 1 22455556677776654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-05 Score=67.99 Aligned_cols=194 Identities=9% Similarity=-0.016 Sum_probs=123.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~ 290 (445)
..+..++|++.+..|+.+....+.|..+++.......+.. .......+++.+.+..| ++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 4678999998777777776555799999998776555443 33567889999865555 455557899999998765433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCC--CccceEEeCCCCCEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLA 366 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~ 366 (445)
+. ........++++|.+..|+.+.... ..+..+.+. +.....+... ...+.++|+|++..|+
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEESCCSSCSCEEEEEEETTTTEEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCcceEEEeCCCCEEE
Confidence 32 3335678999999888888765544 555555542 2222222111 1578999999888888
Q ss_pred EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.+-... +.|..++++...... .+.........+++. .+ .+.-..|.+++|..++
T Consensus 219 ~aD~~~-----~~I~~~~~dG~~~~~-----~~~~~~~~P~giav~-~~-----~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 219 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-ED-----SLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEETTT-----TEEEEEETTSCSCEE-----EECSSCSSEEEEEEE-TT-----EEEEEETTTTEEEEEE
T ss_pred EEECCC-----CEEEEEeCCCCceEE-----EEeCCCCCceEEEEE-CC-----EEEEecCCCCeEEEEE
Confidence 775442 789999987543221 122222334566662 22 2445556666666554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-05 Score=68.64 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=122.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCc--EEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG--ICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~--i~vw~~~~~~~ 178 (445)
...++|+++|+++++-..++.|..|+.+ +....... ....+..+++.++|+ ++++. ..+. |..++.... .
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~---g~~~~~~~--~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g-~ 106 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPD---GNQQIHAT--VEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDG-T 106 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT---CCEEEEEE--CSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTS-C
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCC---CceEEEEe--CCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCC-e
Confidence 5689999999977766578888888763 33333322 345689999999976 44444 3333 555554421 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee--------
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-------- 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-------- 250 (445)
.. .+..+.. ......++..+++..+++-... |.|.++|...+.....
T Consensus 107 ~~----------------------~~~~~~~--~~~~~g~~~~~~~~~~v~d~~~-g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 107 VE----------------------TLLTLPD--AIFLNGITPLSDTQYLTADSYR-GAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EE----------------------EEEECTT--CSCEEEEEESSSSEEEEEETTT-TEEEEEETTTTEEEEEEECGGGSC
T ss_pred EE----------------------EEEeCCC--ccccCcccccCCCcEEEEECCC-CeEEEEeCCCCcEeEEEECCcccc
Confidence 11 1111111 1223455555555434333235 6888888765421111
Q ss_pred -e--cCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCC-CCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 251 -R--RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT-WTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 251 -~--~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~-~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
. ..-...+.+ +|++++|.++ ...+.|+.|++.. ++.. ...........++++++|++.+ +......+..+
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~~~~~V~~~ 238 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRI 238 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEE
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeCCCCeEEEE
Confidence 0 111244555 7888776555 4567999999875 3321 1111123467789999997644 54333444444
Q ss_pred EeccCCCCccccccCccccc--cccccCC-CccceEEeC---CCCCEEEEEEcC
Q 013338 324 HFASKPPSLDAHLLPVDLPD--IVSLTGS-QGIEKIAWD---ASGERLAVSYKG 371 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~~s---p~g~~l~~~s~d 371 (445)
+. .++. +..+... ...++++|. |+++.|+.++..
T Consensus 239 ~~--------------~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 239 AP--------------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CT--------------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CC--------------CCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 31 1111 1122222 257899998 898888877654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-06 Score=71.67 Aligned_cols=188 Identities=13% Similarity=0.035 Sum_probs=110.3
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 225 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 225 (445)
-...|.|+.+ ..+++++.+|.|+++|+.+.+....+ . . .........++++
T Consensus 56 ftqGL~~~~~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-----------------------~----~~~FgeGit~~g~ 106 (268)
T 3nok_A 56 FTQGLVFHQG-HFFESTGHQGTLRQLSLESAQPVWME-R-----------------------L----GNIFAEGLASDGE 106 (268)
T ss_dssp CEEEEEEETT-EEEEEETTTTEEEECCSSCSSCSEEE-E-----------------------C----TTCCEEEEEECSS
T ss_pred ccceEEEECC-EEEEEcCCCCEEEEEECCCCcEEeEE-C-----------------------C----CCcceeEEEEeCC
Confidence 3478888743 44455556689999999865544332 1 1 2222222233556
Q ss_pred eEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---CCee
Q 013338 226 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS---GFVT 299 (445)
Q Consensus 226 ~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~---~~v~ 299 (445)
.|+.....++.+.+||..+.+..........-..++ ++++.|+.+..++.|+++|..+.+.. .+. ... ..++
T Consensus 107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp CEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 777766655799999999988766555443334444 57888888878999999999998873 222 222 2456
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-c----ccCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-S----LTGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
.+.|. +|+ |++....+..+..|+..... -...++. ..+. . ..... -.+.+||+|+++.|++.+..
T Consensus 185 eLe~~-dG~-lyanvw~s~~I~vIDp~TG~---V~~~Idl--~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 185 ELECA-NGV-IYANIWHSSDVLEIDPATGT---VVGVIDA--SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEE-TTE-EEEEETTCSEEEEECTTTCB---EEEEEEC--HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred ccEEe-CCE-EEEEECCCCeEEEEeCCCCc---EEEEEEC--CCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 67777 664 55555444555555532211 0001110 0000 0 00111 57899999988777776653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00027 Score=63.19 Aligned_cols=231 Identities=9% Similarity=-0.017 Sum_probs=138.4
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCC---CCcccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP---GNAASVRSGAAS 188 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~---~~~~~~~~~~~~ 188 (445)
+|+.+. ...|+..+++. ......+ .....+.+++|+++++.++.+... +.|..+++... .....
T Consensus 3 ~ll~~~-~~~I~~i~~~~--~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------- 70 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDR--SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------- 70 (316)
T ss_dssp EEEEEC-BSSEEEEETTS--CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------
T ss_pred EEEEEC-CCeEEEEECCC--cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-------
Confidence 344443 45678888753 3222322 234568899999976777777654 88888887631 01000
Q ss_pred ccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCC
Q 013338 189 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGD 267 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~ 267 (445)
.+... ......+++++.+..|+.+....+.|.++++.......+.. .......++++|.+.
T Consensus 71 -----------------~~~~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 71 -----------------VISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -----------------EECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT
T ss_pred -----------------EEeCC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC
Confidence 01111 13567899987666676665444699999987655444433 346789999999777
Q ss_pred EEEEEec-C-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 268 YFFAAKF-D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 268 ~l~~~~~-d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
.|..+.. . +.|..++++......+. ..-...+.+++++++..|+.+......+..+++.... ...+
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-----------~~~~ 201 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------RKTI 201 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------CEEE
T ss_pred EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-----------eEEE
Confidence 6655544 3 68999998765443332 2345678999999998888887666677777653210 0111
Q ss_pred ccccCC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 345 VSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 345 ~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
...... .....+++. +..|+.+...+ +.|..++..+++..
T Consensus 202 ~~~~~~~~~P~giav~--~~~ly~~d~~~-----~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--EDKVFWTDIIN-----EAIFSANRLTGSDV 242 (316)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred eecCCccCCcEEEEEE--CCEEEEEECCC-----CeEEEEeCCCCcce
Confidence 111011 135677774 34555544332 78999997666543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00026 Score=72.13 Aligned_cols=274 Identities=8% Similarity=0.003 Sum_probs=161.4
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec------CCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~------~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
.+....|.++...++|.+-+ |+.++-|..++... +.. ..... -....|.++...++ +.+.++..++.+.
T Consensus 306 ~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~l~~~~V~~i~~d~~-g~lWiGt~~~Gl~ 380 (795)
T 4a2l_A 306 SLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIR--NRF-KNIRNIPYKNSLSDNVVSCIVEDKD-KNLWIGTNDGGLN 380 (795)
T ss_dssp SCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGG--GSS-EEECCCTTSSSCSCSSEEEEEECTT-SCEEEEESSSCEE
T ss_pred CCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCc--ccc-eEEcCCCCCCCCCCCeeEEEEECCC-CCEEEEECCCCeE
Confidence 34456799999999988655 67767788887643 221 11111 02456999999888 5677777777899
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.|+...... ....... .... .-....|.++...++++.|..|+.+ +-|.+||..+++..
T Consensus 381 ~~~~~~~~~-~~~~~~~------------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 381 LYNPITQRF-TSYTLQE------------------DESARGIGSNNIKAVYVDEKKSLVYIGTHA-GGLSILHRNSGQVE 440 (795)
T ss_dssp EECTTTCCE-EEECCC------------------------CCSCSCEEEEEEETTTTEEEEEETT-TEEEEEETTTCCEE
T ss_pred EEcCCCCcE-EEEecCC------------------CCcccCCCCccEEEEEEcCCCCEEEEEeCc-CceeEEeCCCCcEE
Confidence 998763211 1100000 0000 0012578999998888756667766 57999999887665
Q ss_pred eeec-----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC-------CCCCeeEEEECCCCCeEEEEEcC
Q 013338 249 PIRR-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 249 ~~~~-----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+.. ....|.++...++|+..+.. . +-+.+||..+++...+.. ....|.++...++|+..+.+ .
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~- 516 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E- 516 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-
T ss_pred EeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-
Confidence 5432 24578999998888755544 4 458899998876543321 23578999999999877644 3
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
..+..++..... . .... . .....+ ....|.++..+++|++.++. .+ -|..||..+++....
T Consensus 517 -~Gl~~~~~~~~~--~--~~~~-~-~~~~~l-~~~~i~~i~~d~~g~lWigT-~~-------Gl~~~d~~~~~~~~~--- 577 (795)
T 4a2l_A 517 -EGLSVFKQEGLD--I--QKAS-I-LPVSNV-TKLFTNCIYEASNGIIWVGT-RE-------GFYCFNEKDKQIKRY--- 577 (795)
T ss_dssp -SCEEEEEEETTE--E--EECC-C-SCSCGG-GGSCEEEEEECTTSCEEEEE-SS-------CEEEEETTTTEEEEE---
T ss_pred -CceEEEeCCCCe--E--EEec-C-CCCCCC-CCCeeEEEEECCCCCEEEEe-CC-------CceeECCCCCcEEEe---
Confidence 224444432110 0 0000 0 000001 11168899999999866543 22 378899876644321
Q ss_pred eeeeC-CCCCCCceeEeecCCC
Q 013338 397 GFIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 397 ~~~~~-~~~~v~~v~~spdg~~ 417 (445)
....+ ....|.++...++|++
T Consensus 578 ~~~~gl~~~~i~~i~~d~~g~l 599 (795)
T 4a2l_A 578 NTTNGLPNNVVYGILEDSFGRL 599 (795)
T ss_dssp CGGGTCSCSCEEEEEECTTSCE
T ss_pred CCCCCCchhheEEEEECCCCCE
Confidence 11112 1334666776666664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00017 Score=64.54 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=139.4
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+.+ ....|+..+++...... .... .....+.+++|.+.++.|+.+.. .+.|..++.........+
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--------- 73 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENA-TIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------- 73 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCC-EEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE---------
T ss_pred EEEEE-ccCeEEEEECCCCceEE-EEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE---------
Confidence 34433 45678888886422111 1221 12335678999987677776654 478888887633211111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~ 270 (445)
+... -.....+++.+.+..|+.+....+.|.++++.......+. ........++++|.+.+|.
T Consensus 74 ---------------~~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly 137 (318)
T 3sov_A 74 ---------------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY 137 (318)
T ss_dssp ---------------EEEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEE
T ss_pred ---------------EcCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEE
Confidence 0111 1356788998866666666544469999998866554444 3456789999999766666
Q ss_pred EEe--cCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAK--FDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~--~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
.+. ..+.|+.++++......+. ..-...+.+++++++..|+.+-.....+..+++.. ...+.+
T Consensus 138 ~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~~ 203 (318)
T 3sov_A 138 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAV 203 (318)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEE
T ss_pred EEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--------------CceEEE
Confidence 555 3578999998765443332 23345789999998888888876666777776532 111111
Q ss_pred -cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 348 -TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 348 -~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.... ....+++. +..++.+...+ +.|..++..+++..
T Consensus 204 ~~~~~~~P~glav~--~~~lywtd~~~-----~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 204 VKGSLPHPFALTLF--EDILYWTDWST-----HSILACNKYTGEGL 242 (318)
T ss_dssp ECSCCSCEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred ecCCCCCceEEEEe--CCEEEEEecCC-----CeEEEEECCCCCce
Confidence 1111 45667764 33454443332 78999998776643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-05 Score=70.57 Aligned_cols=194 Identities=9% Similarity=-0.014 Sum_probs=122.7
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~ 290 (445)
..+..++|++.+..|+.+....+.|..+++.......+.. .......+++++.+..| ++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4678999998777777776555799999998776544433 33466789999865555 455557789999988655433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCC-C-ccceEEeCCCCCEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLA 366 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~sp~g~~l~ 366 (445)
+. ........++++|.+..|+.+.... ..+..+.+. +.....+... . ..+.++|+|++..|+
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGlavd~~~~~lY 261 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY 261 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence 32 3335678999999888888765444 455555432 2222222111 1 578999999888888
Q ss_pred EEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
.+.... +.|..++++...... .+.........+++. .+ .++-..|.+++|..++
T Consensus 262 ~aD~~~-----~~I~~~d~dG~~~~~-----~~~~~~~~P~giav~-~~-----~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 262 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-ED-----SLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEETTT-----TEEEEECTTSCSCEE-----EECSSCSSEEEEEEE-TT-----EEEEEETTTTEEEEEE
T ss_pred EEECCC-----CEEEEEeCCCCeeEE-----EEECCCCCceEEEEE-CC-----EEEEeeCCCCeEEEEE
Confidence 775442 789999987543321 122222334566662 22 2455567777776664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-08 Score=91.01 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=73.8
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++..+++++.|+.+..||.. +|+.+..... +.+.+..+..++..+++++.|+.|+.||..+++......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~--tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~------ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKR--TGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP------ 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETT--TCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS------
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee------
Confidence 57788899999999999985 5776655532 455555566675566666788999999987443221110
Q ss_pred cccccCCCCCceEEEEeecccCCCcee-EEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY 268 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~ 268 (445)
.+....+. +..+. ++..+++++.+ |.++.||..+|+......... ...++|++..
T Consensus 77 -------------------~~~~~~~~~sp~~~-~~~~v~~g~~d-g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~ 132 (369)
T 2hz6_A 77 -------------------FTIPELVQASPCRS-SDGILYMGKKQ-DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSL 132 (369)
T ss_dssp -------------------CCHHHHHTTCSCC------CCCCEEE-EEEEEECCC-------------------------
T ss_pred -------------------ccCccccccCceEe-cCCEEEEEeCC-CEEEEEECCCCcEEEEecCCC---cccccccCCE
Confidence 00000010 01111 34467777778 699999999997755443322 2345678889
Q ss_pred EEEEecCCeEEEEeCCCCCc
Q 013338 269 FFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~ 288 (445)
+++++.|+.|+.||.++++.
T Consensus 133 v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSC
T ss_pred EEEEecCCEEEEEECCCCCE
Confidence 99999999999999999876
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=0.0001 Score=63.07 Aligned_cols=190 Identities=8% Similarity=0.109 Sum_probs=116.7
Q ss_pred CeeEEEEccCCCEEEE-EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
.+..++|+|++..|++ ...++.|...|.. ++.+..+..+-....-.|++.+++. ++.+. .++.+.++++...+.
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECTTCC
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCCCCe
Confidence 5899999998765554 5566666666652 6666665433335688899998854 44444 458888998874443
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccC---CCceeeec---
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIRR--- 252 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~---~~~~~~~~--- 252 (445)
...+... .........+.....++|+|+++.|+++...+ ...+|.++. .....+..
T Consensus 104 i~~~~~~-----------------~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 104 VKILKKI-----------------KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EEEEEEE-----------------ECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHH
T ss_pred eeeeeee-----------------ccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchh
Confidence 1111100 00000112236789999999998888887763 555665541 11111111
Q ss_pred -----CCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCcc--cccC-------CCCCeeEEEECCCCCeEEE
Q 013338 253 -----GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE--PWSS-------TSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 253 -----~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~--~~~~-------~~~~v~~~~~sp~~~~l~~ 312 (445)
....+.+++++|. +++++.....+.+.++|....... .+.. .-.....|+|.++|+..++
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv 240 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV 240 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence 2345789999997 455566666778999997765332 2221 1236789999999985554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.52 E-value=7e-05 Score=63.19 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=118.7
Q ss_pred eeEEEEccCCCEEEEEECC--CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCC
Q 013338 102 LQGVSWHQHKHIVAFISGS--TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN 178 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~ 178 (445)
...+.|+. +.++.+.+.. ..|+.+|+. +++.+..... ...........++++++... .++.+.+||..+.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~--tgkv~~~~~l--~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl-- 95 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLE--TGRILQRAEV--PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL-- 95 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETT--TCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT--
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECC--CCCEEEEEeC--CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC--
Confidence 56788886 5555555554 489999985 5776665543 22333333333445666655 4699999998832
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---CC-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF- 254 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---~~- 254 (445)
.++.++.... .-..++ ++++.|+.+..+ +.|.++|..+.+...... +.
T Consensus 96 -----------------------~~~~ti~~~~--~Gwglt--~dg~~L~vSdgs-~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 96 -----------------------TPRARFRYPG--EGWALT--SDDSHLYMSDGT-AVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp -----------------------EEEEEEECSS--CCCEEE--ECSSCEEEECSS-SEEEEECTTTCCEEEEEECEETTE
T ss_pred -----------------------cEEEEEeCCC--CceEEe--eCCCEEEEECCC-CeEEEEeCCCCeEEEEEEEccCCc
Confidence 2344444322 123444 567777777666 599999999887643322 21
Q ss_pred --CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------cc--------CCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 255 --GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--------STSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 255 --~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------~~--------~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
..++.+.|. +|+..+....+..|.+.|.++++... +. ......+.|+++|+++.|++++..=.
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 456677776 67666666568899999999998721 11 12235689999999888887754434
Q ss_pred eEEEEEe
Q 013338 319 TLGSIHF 325 (445)
Q Consensus 319 ~~~~~~~ 325 (445)
.++.+++
T Consensus 227 ~~~~v~~ 233 (243)
T 3mbr_X 227 MLYEIRL 233 (243)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 4555554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00046 Score=63.92 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=140.3
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.+|+.+ ....|+..+++. ... ..+. .....+..|+|++.++.|+.+.. .+.|+.+++........
T Consensus 84 ~~ll~~-~~~~I~~i~l~~--~~~-~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~--------- 149 (400)
T 3p5b_L 84 AYLFFT-NRHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------- 149 (400)
T ss_dssp CEEEEE-ETTEEEEECTTS--CSC-EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------
T ss_pred ceeEEe-ccceeEEEccCC--cce-eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------
Confidence 344444 456788878753 222 2222 34567889999997677777664 47888887762110000
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l 269 (445)
....+... ......+++.+.+..|+.+....+.|.+.++.......+.. .......++++|.+.+|
T Consensus 150 ------------~~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 150 ------------YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp ------------CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred ------------ceEEEeCC-CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence 00011111 24678899998666677666554799999988765544443 34668999999977766
Q ss_pred EEEec--CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccc
Q 013338 270 FAAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS 346 (445)
Q Consensus 270 ~~~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (445)
..+.. .+.|+..+++......+. ..-...+.+++++++..|+.+-.....+..+++.. .....
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~ 282 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKT 282 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CCCEE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--------------CccEE
Confidence 65542 478999999876554332 23356789999999999988866666777776532 11111
Q ss_pred c-cC--C-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 347 L-TG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 347 ~-~~--~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+ .. . ....++++ ++..|+.+...+ +.|..+|..+|+..
T Consensus 283 ~~~~~~~l~~P~gl~v--~~~~lywtd~~~-----~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV 324 (400)
T ss_dssp EEECSSTTSSEEEEEE--ETTEEEEEESSS-----CSEEEEESSSCCCC
T ss_pred EEeCCCCCCCCEEEEE--eCCEEEEecCCC-----CeEEEEEcCCCCce
Confidence 1 11 1 13456666 344555544332 67888886666543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-05 Score=73.25 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=98.8
Q ss_pred CeeEEEECc-CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 146 DVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 146 ~v~~l~~sp-d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
....|+++| +++.|+++...+.|+.+|+... .. ..+... ......++|++++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v-------------------------~~~~~~-~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YV-------------------------STVYSG-LSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EE-------------------------EEEECC-CSCEEEEEECTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EE-------------------------EEEecC-CCCcceEEEeCCC
Confidence 467899998 4566776665577778877621 11 111112 2568899999999
Q ss_pred CeEEEEEecCC----eEEEEEccCCCce--eeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCccccc--CCC
Q 013338 225 RYLASASYESS----SFTIWDVAQGLGT--PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STS 295 (445)
Q Consensus 225 ~~l~~~~~d~g----~v~vwd~~~~~~~--~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~ 295 (445)
++|+++...++ .+.+++.. +... ...........++++| +|..+++-..++.|+.++..++....+. ...
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 97777765322 34444433 3222 2222345677899999 6776666667889999999876652222 222
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.....++|+|+|++|+++......+..+...
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 4577899999999888777666777776653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00021 Score=66.22 Aligned_cols=159 Identities=13% Similarity=-0.007 Sum_probs=104.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCC----Cceeeec-CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~----~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++.+..|+.+....+.|+.+++... ....+.. .......+++.+.+..| ++-...+.|.+.+++..
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 578899999977778777665568999998762 2333333 44678899999855545 45556789999999876
Q ss_pred Cccccc-CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCcccccccccc-CC-CccceEEeCCCC
Q 013338 287 TSEPWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GS-QGIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~sp~g 362 (445)
....+. ........++++|.+.+|+.+... ...+..+.+ ++.....+. .. ...+.|++++++
T Consensus 192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~~~~~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 257 (400)
T ss_dssp SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET--------------TSCSCEEEECSSCSCEEEEEEETTT
T ss_pred ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC--------------CCCccEEEEECCCCceEEEEEEeCC
Confidence 654333 234457899999988877766433 244555544 222222221 11 267899999998
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+.|+.+-... +.|..+|++....
T Consensus 258 ~~lY~aD~~~-----~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 258 GRLYWVDSKL-----HSISSIDVNGGNR 280 (400)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCCC
T ss_pred CEEEEEECCC-----CEEEEEeCCCCcc
Confidence 8888875432 7899999875443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-05 Score=77.56 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=47.0
Q ss_pred EEEEcc-CCCEEEEEECCC-----------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEE
Q 013338 104 GVSWHQ-HKHIVAFISGST-----------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICI 170 (445)
Q Consensus 104 ~~~~sp-~g~~la~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~v 170 (445)
++++.+ +|++++.|+.+. .+.+||....+-..+......+.....++++..++..++++|.+ ..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 899999887543 57788876544333333333344445567888886666666644 68999
Q ss_pred EccC
Q 013338 171 WAPS 174 (445)
Q Consensus 171 w~~~ 174 (445)
||..
T Consensus 270 yd~~ 273 (656)
T 1k3i_A 270 YDSS 273 (656)
T ss_dssp EEGG
T ss_pred ecCc
Confidence 9987
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00059 Score=66.98 Aligned_cols=228 Identities=8% Similarity=-0.005 Sum_probs=144.9
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
.+|+.+ ....|+..+++.. .....+....-..+..|+|++.++.++.+.. ++.|..++++... ...+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~--~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v-------- 74 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETN--NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHV-------- 74 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCT--TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE--------
T ss_pred cEEEEE-eCCcEEEEECCCC--CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEE--------
Confidence 345544 5677888888632 2222222223456889999998777777664 4888888776221 1111
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEE
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l 269 (445)
+... ......+++++.+..|+.+....+.|.+.++.......+. ..-.....++++|...+|
T Consensus 75 ----------------~~~g-~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~l 137 (628)
T 4a0p_A 75 ----------------VEFG-LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 137 (628)
T ss_dssp ----------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEE
T ss_pred ----------------EeCC-CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeE
Confidence 1111 1356789998877777777665579999999876554444 345678999999976666
Q ss_pred EEEe--cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 270 FAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 270 ~~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
..+. ..+.|...+++......+...-...+.++++++++.|+.+-.....+..+++... ....+
T Consensus 138 Y~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~--------------~~~v~ 203 (628)
T 4a0p_A 138 YWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL--------------NREVI 203 (628)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------------SCEEE
T ss_pred EEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC--------------ceEEe
Confidence 5554 2568999998877665444445678899999999999888777777777776321 11111
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.... ...++++.. ..|+.+.... +.|...|..+++
T Consensus 204 ~~~l~~P~glav~~--~~ly~tD~~~-----~~I~~~dk~tg~ 239 (628)
T 4a0p_A 204 ADDLPHPFGLTQYQ--DYIYWTDWSR-----RSIERANKTSGQ 239 (628)
T ss_dssp EECCSCEEEEEEET--TEEEEEETTT-----TEEEEEETTTCC
T ss_pred eccCCCceEEEEEC--CEEEEecCCC-----CEEEEEECCCCC
Confidence 1111 355677654 3555554332 788888876654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00031 Score=71.43 Aligned_cols=275 Identities=12% Similarity=0.085 Sum_probs=157.3
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE--ecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 175 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~ 175 (445)
....|.++...++|.+.+ |+.++-+..|+... +...... .......|.++...++ +.|.++..++.+..++...
T Consensus 361 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigt~~~Gl~~~~~~~ 436 (781)
T 3v9f_A 361 SNKVVSSVCDDGQGKLWI-GTDGGGINVFENGK--RVAIYNKENRELLSNSVLCSLKDSE-GNLWFGTYLGNISYYNTRL 436 (781)
T ss_dssp SSSCEEEEEECTTSCEEE-EEBSSCEEEEETTE--EEEECC-----CCCSBEEEEEECTT-SCEEEEETTEEEEEECSSS
T ss_pred CCcceEEEEEcCCCCEEE-EeCCCcEEEEECCC--CeEEEccCCCCCCCcceEEEEECCC-CCEEEEeccCCEEEEcCCC
Confidence 445799999988887654 56556677787532 2111100 0113467899998887 5677777667788888752
Q ss_pred CCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC--
Q 013338 176 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-- 253 (445)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-- 253 (445)
.. ...+. ........|.++...++|++.+ ++.. -|..||..+++.......
T Consensus 437 ~~-~~~~~-----------------------~~~~~~~~v~~i~~d~~g~lwi-gt~~--Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 437 KK-FQIIE-----------------------LEKNELLDVRVFYEDKNKKIWI-GTHA--GVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp CE-EEECC-----------------------STTTCCCCEEEEEECTTSEEEE-EETT--EEEEEESSSSSCCEEECTTT
T ss_pred Cc-EEEec-----------------------cCCCCCCeEEEEEECCCCCEEE-EECC--ceEEEeCCCCeEEecccCcc
Confidence 21 10000 0011125788999888876544 4433 689999887766444321
Q ss_pred ----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 254 ----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 254 ----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
...|.++...++|+..+ |+.++-|..||..+++...+.. ....|.++...++|.+.+++ . .+.+..
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~----~Glv~~ 563 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G----EGLVCF 563 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-T----TEEEEE
T ss_pred cccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-C----CCceEE
Confidence 35789999988887555 4544448889988776543321 24568899999998876643 2 233222
Q ss_pred ccCCCCccccccCccccccccc---cC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeee
Q 013338 326 ASKPPSLDAHLLPVDLPDIVSL---TG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR 400 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~---~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~ 400 (445)
++... .....+ .+ ...|.++..+++|.+.+++ .. | |..|+.++++..... ...
T Consensus 564 ~d~~~-----------~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~------G-l~~~~~~~~~~~~~~---~~d 621 (781)
T 3v9f_A 564 PSARN-----------FDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NT------G-ISCYITSKKCFYTYD---HSN 621 (781)
T ss_dssp SCTTT-----------CCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SS------C-EEEEETTTTEEEEEC---GGG
T ss_pred ECCCC-----------CcEEEccccCCCCCceEEEEEECCCCCEEEEc-CC------c-eEEEECCCCceEEec---ccC
Confidence 22211 111111 11 1157889999999876654 32 3 777887765443211 111
Q ss_pred CCCC---CCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 401 GPGD---NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 401 ~~~~---~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+-.. ...++...++|+ |-+|..+|-+.+.|-
T Consensus 622 Gl~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~f~p~ 655 (781)
T 3v9f_A 622 NIPQGSFISGCVTKDHNGL------IYFGSINGLCFFNPD 655 (781)
T ss_dssp TCCSSCEEEEEEEECTTSC------EEEEETTEEEEECSC
T ss_pred CccccccccCceEECCCCE------EEEECCCceEEEChh
Confidence 1110 012344445554 556777887766553
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.9e-05 Score=78.37 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=71.0
Q ss_pred ceeEEEEC-CCCCeEEEEEecCC----eEEEEEccCC-CceeeecCCCCeeEEEEcCCCCEEEEEecC-----CeEEEEe
Q 013338 214 QITALSWG-PDGRYLASASYESS----SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-----GTFYLWE 282 (445)
Q Consensus 214 ~v~~~~~s-p~~~~l~~~~~d~g----~v~vwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd 282 (445)
.+...+|| |||++|+.+...+| +|+++|+.++ +..... .......++|+|||+.|+....+ ..|++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57789999 99999998766433 4999999988 632110 01124578999999988877665 3688899
Q ss_pred CCCCCcc--cc-c-CCCCCeeEEEECCCCCeEEEEEc
Q 013338 283 TNTWTSE--PW-S-STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 283 ~~~~~~~--~~-~-~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+.+++.. .+ . ........+.|+|||++|+....
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~ 290 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ 290 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec
Confidence 9876532 22 1 22334668899999999987654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.8e-07 Score=83.93 Aligned_cols=143 Identities=11% Similarity=0.044 Sum_probs=70.7
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCC-Ce-e
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSG-FV-T 299 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~-~v-~ 299 (445)
++..+++++.| |.|+.||..+|+....... +.+.+..+..+++.+++++.|+.|+.||..+++.. .+..+.. .+ .
T Consensus 8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETT-SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCC-CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 56788888888 7999999999988655544 55555556667878888889999999999888763 2221110 01 0
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceE
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL 379 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~ 379 (445)
+..+..+ ..++++. ..+.+..++.. +++.+..+..+. ...++|++..+++++.+ +.
T Consensus 86 sp~~~~~-~~v~~g~----~dg~v~a~D~~----------tG~~~w~~~~~~---~~~~~p~~~~v~~~~~d------g~ 141 (369)
T 2hz6_A 86 SPCRSSD-GILYMGK----KQDIWYVIDLL----------TGEKQQTLSSAF---ADSLSPSTSLLYLGRTE------YT 141 (369)
T ss_dssp CSCC------CCCCE----EEEEEEEECCC-----------------------------------EEEEEEE------EE
T ss_pred CceEecC-CEEEEEe----CCCEEEEEECC----------CCcEEEEecCCC---cccccccCCEEEEEecC------CE
Confidence 1111123 3444332 23444444432 333333333332 23456788889988877 89
Q ss_pred EEEEEccCCCee
Q 013338 380 IAIYDARRTPLI 391 (445)
Q Consensus 380 i~vwd~~~~~~~ 391 (445)
|+.||.++|+.+
T Consensus 142 v~a~d~~tG~~~ 153 (369)
T 2hz6_A 142 ITMYDTKTRELR 153 (369)
T ss_dssp EECCCSSSSSCC
T ss_pred EEEEECCCCCEE
Confidence 999999998865
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.3e-06 Score=73.80 Aligned_cols=255 Identities=9% Similarity=0.016 Sum_probs=136.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
++....+|.+ ..++.++.+..|| . +++...... .....+.++...++ +.+++++.+ +..+|.. ........
T Consensus 24 ~~~~d~~g~l-~v~t~~~~l~~~d-~--~g~~~~~~~-~~~~~~~~~~~~~~-g~l~v~t~~--l~~~d~~-g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGTI-YLGSSNKNLYAIN-T--DGSVKWFFK-SGEIIECRPSIGKD-GTIYFGSDK--VYAINPD-GTEKWRFD 94 (330)
T ss_dssp CCEECTTSCE-ECSSTTTTTEEEC-T--TSCEEESSC-GGGEEEECCEETTT-TEECCSSCE--EEEECCC-GGGGGGSC
T ss_pred CceEccCCeE-EEEcCCCEEEEEC-C--CCcEEEEEe-cCCCcccceEEecC-CcEEEecCc--EEEECCC-CcEEEEEE
Confidence 3444455554 4466777788887 4 344333221 12334566777776 455554444 7777742 21111111
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEE
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKW 262 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~ 262 (445)
.. ........+. +..+..++.+ |.|..+|.. ++..... .....+.++..
T Consensus 95 ~~--------------------------~~~~~~~~~~--~~~l~v~t~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 144 (330)
T 3hxj_A 95 TK--------------------------KAIVSDFTIF--EDILYVTSMD-GHLYAINTD-GTEKWRFKTKKAIYATPIV 144 (330)
T ss_dssp C-------------------------------CCEEEE--TTEEEEECTT-SEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CC--------------------------CCcccCceEE--CCEEEEEecC-CEEEEEcCC-CCEEEEEcCCCceeeeeEE
Confidence 00 0111222222 4456667767 699999988 6554332 23445667777
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
.+++. +..++.++.|..||.. ++. .........+.++...+++...+ +. ..+..++ . +.
T Consensus 145 ~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t---~~l~~~d---~-----------~g 204 (330)
T 3hxj_A 145 SEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS---DKVYAIN---P-----------DG 204 (330)
T ss_dssp CTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES---SSEEEEC---T-----------TS
T ss_pred cCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee---CEEEEEC---C-----------CC
Confidence 77776 6667778999999998 654 23333345677788888887655 32 2233333 1 22
Q ss_pred cccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCC
Q 013338 342 PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG 420 (445)
Q Consensus 342 ~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~ 420 (445)
..+..+.... .+.++..+++|...+ ++.+ +.|..+|. +++.+. .+......+..+.+.++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~------~gl~~~~~-~g~~~~-----~~~~~~~~~~~~~~~~~g~---- 267 (330)
T 3hxj_A 205 TEKWNFYAGYWTVTRPAISEDGTIYV-TSLD------GHLYAINP-DGTEKW-----RFKTGKRIESSPVIGNTDT---- 267 (330)
T ss_dssp CEEEEECCSSCCCSCCEECTTSCEEE-EETT------TEEEEECT-TSCEEE-----EEECSSCCCSCCEECTTSC----
T ss_pred cEEEEEccCCcceeceEECCCCeEEE-EcCC------CeEEEECC-CCCEeE-----EeeCCCCccccceEcCCCe----
Confidence 2222222222 578888998886554 5555 66777774 344331 2232333445566655554
Q ss_pred CeEEEEecCeeeEeee
Q 013338 421 PLLSVCWSSGFCCTYP 436 (445)
Q Consensus 421 ~~l~~~~~~G~v~~~~ 436 (445)
+-++..+|.+..++
T Consensus 268 --l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 268 --IYFGSYDGHLYAIN 281 (330)
T ss_dssp --EEEECTTCEEEEEC
T ss_pred --EEEecCCCCEEEEC
Confidence 34455555555443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-05 Score=63.88 Aligned_cols=193 Identities=13% Similarity=0.037 Sum_probs=109.4
Q ss_pred CCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG 221 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 221 (445)
..-...|.|+++ ..+.+++.+ ..|+.+|+.+.+....+ .-. .........
T Consensus 20 ~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~-------------------------~l~--~~~fgeGi~ 71 (243)
T 3mbr_X 20 TAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRA-------------------------EVP--PPYFGAGIV 71 (243)
T ss_dssp TCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEE-------------------------ECC--TTCCEEEEE
T ss_pred ccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEE-------------------------eCC--CCcceeEEE
Confidence 344669999873 444555554 48999999854433222 111 222223233
Q ss_pred CCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc--CCC---
Q 013338 222 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STS--- 295 (445)
Q Consensus 222 p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~--- 295 (445)
+.++.|+.....++.+.+||..+.+..........-..++ ++++.|+++..++.|+++|..+.+.. .+. .+.
T Consensus 72 ~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 72 AWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp EETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred EeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence 3456677766655799999999988766555444334454 57777777777899999999998763 222 121
Q ss_pred CCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcc-ccc-cccc-cCCC-ccceEEeCCCCCEEEEEEcC
Q 013338 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD-LPD-IVSL-TGSQ-GIEKIAWDASGERLAVSYKG 371 (445)
Q Consensus 296 ~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~-~v~~~~~sp~g~~l~~~s~d 371 (445)
..++.+.|. +|+ |++..-.+..+..++...... ...++.. ... .... .... -.+.+|++|+++.|++.+..
T Consensus 150 ~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V---~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 150 DNLNELEWV-NGE-LLANVWLTSRIARIDPASGKV---VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBE---EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCE---EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 245566665 555 444544444455554332110 0011100 000 0000 0111 57899999998888887654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00029 Score=71.72 Aligned_cols=278 Identities=9% Similarity=0.017 Sum_probs=159.7
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-------CCCCCeeEEEECcCCCcEEEEecCCcEE
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-------DSQRDVKVLEWRPNGGRSLSVGCKGGIC 169 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~~v~~l~~spd~~~l~~~~~dg~i~ 169 (445)
+....|.++...++|.+-+ |+.++-+..|+... ++....... -....|.++...+++..|.++..++.+.
T Consensus 354 l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT--QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLS 430 (795)
T ss_dssp CSCSSEEEEEECTTSCEEE-EESSSCEEEECTTT--CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred CCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCC--CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence 3445799999999887665 67776788888642 322221110 0235689999888843277777777899
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
+|+..... ...+... ........|.++...++|++.+.. .. .+.+||..+++...
T Consensus 431 ~~d~~~~~-~~~~~~~---------------------~~~l~~~~v~~i~~d~~g~lwigt-~~--Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 431 ILHRNSGQ-VENFNQR---------------------NSQLVNENVYAILPDGEGNLWLGT-LS--ALVRFNPEQRSFTT 485 (795)
T ss_dssp EEETTTCC-EEEECTT---------------------TSCCSCSCEEEEEECSSSCEEEEE-SS--CEEEEETTTTEEEE
T ss_pred EEeCCCCc-EEEeecC---------------------CCCcCCCeeEEEEECCCCCEEEEe-cC--ceeEEeCCCCeEEE
Confidence 99876322 1111000 000112578999998888755443 33 58889988765544
Q ss_pred eec-------CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-------CCCCCeeEEEECCCCCeEEEEEc
Q 013338 250 IRR-------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 250 ~~~-------~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
... ....|.++...++|+..+.. . +-|..||..+++. .+. .....|.++...++|++.+.+ .
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~ 561 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-R 561 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-S
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-C
Confidence 332 13578999999888865544 4 4588898877654 221 123468899999999866644 2
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
. .+..++.... .........+- ..|.++..+++|++.+++ . +-|..|+.++++....
T Consensus 562 ~--Gl~~~d~~~~-----------~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-------~Gl~~~~~~~~~~~~~ 620 (795)
T 4a2l_A 562 E--GFYCFNEKDK-----------QIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-------RGISCFNPETEKFRNF 620 (795)
T ss_dssp S--CEEEEETTTT-----------EEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-------TEEEEEETTTTEEEEE
T ss_pred C--CceeECCCCC-----------cEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-------CceEEEcCCCCcEEEc
Confidence 2 2333332110 00000111111 157889999999877655 2 3478888876544311
Q ss_pred eeeeeeeCCC-CCC--CceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 394 SLIGFIRGPG-DNP--KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 394 ~~~~~~~~~~-~~v--~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
....+-. ..+ .++...++|+ |-+|..+|-+.+.|
T Consensus 621 ---~~~dGl~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~~~p 657 (795)
T 4a2l_A 621 ---TESDGLQSNQFNTASYCRTSVGQ------MYFGGINGITTFRP 657 (795)
T ss_dssp ---CGGGTCSCSCEEEEEEEECTTSC------EEEEETTEEEEECG
T ss_pred ---CCcCCCccccCccCceeECCCCe------EEEecCCceEEEcH
Confidence 1111111 111 2344445554 45677778776654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00018 Score=66.12 Aligned_cols=262 Identities=13% Similarity=0.008 Sum_probs=136.4
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
++..+++++.++.+..+|.. +|+.+...... .......... + +.+++++.++.+..+|..++...-......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~--tG~~~W~~~~~-~~~~~~p~~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--- 173 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTS--DGTVAWQTKVA-GEALSRPVVS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDM--- 173 (376)
T ss_dssp ETTEEEEEETTSEEEEEETT--TCCEEEEEECS-SCCCSCCEEE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECC--CCCEEEEEeCC-CceEcCCEEE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCC---
Confidence 45567778889999999874 46655444321 1111112222 3 577777888999999987333211111000
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCC--------eeEEE
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--------LSILK 261 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~--------v~~~~ 261 (445)
....... ....... +..++++..+ |.+..+|..+++.......... +..+.
T Consensus 174 -------------~~~~~~~-----~~~~~~~--~~~v~~g~~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 232 (376)
T 3q7m_A 174 -------------PSLSLRG-----ESAPTTA--FGAAVVGGDN-GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD 232 (376)
T ss_dssp ------------------CC-----CCCCEEE--TTEEEECCTT-TEEEEEETTTCCEEEEEECCC-----------CCC
T ss_pred -------------CceeecC-----CCCcEEE--CCEEEEEcCC-CEEEEEECCCCcEEEEEecccCCCCcccccccccC
Confidence 0000000 0111221 3456667667 7999999998877544332110 00011
Q ss_pred EcC--CCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 262 WSP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 262 ~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
-.| .+..+++++.++.+..+|.++++....... .....+... +..++++.. ++.+..++..+
T Consensus 233 ~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~t------------ 296 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIVD--GNRIYLVDQ-NDRVMALTIDG------------ 296 (376)
T ss_dssp CCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEEE--TTEEEEEET-TCCEEEEETTT------------
T ss_pred CCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceEE--CCEEEEEcC-CCeEEEEECCC------------
Confidence 111 356778888899999999999886422222 233444443 445554433 34455555322
Q ss_pred cccccccccC--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 340 DLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 340 ~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
++.+..... ...+..... .+..|++++.+ |.|+++|.++++.+. ........+.......++
T Consensus 297 -G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~------g~l~~~d~~tG~~~~-----~~~~~~~~~~~~~~~~~~-- 360 (376)
T 3q7m_A 297 -GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE------GYLHWINVEDGRFVA-----QQKVDSSGFQTEPVAADG-- 360 (376)
T ss_dssp -CCEEEEECTTTTSCCCCCEE--ETTEEEEECTT------SEEEEEETTTCCEEE-----EEECCTTCBCSCCEEETT--
T ss_pred -CcEEEeecccCCCcccCCEE--ECCEEEEEeCC------CeEEEEECCCCcEEE-----EEecCCCcceeCCEEECC--
Confidence 122111110 112223333 24567777766 899999999988763 222222222222111232
Q ss_pred CCCCeEEEEecCeeeEeee
Q 013338 418 KQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~ 436 (445)
.|-++..+|.+..|+
T Consensus 361 ----~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 ----KLLIQAKDGTVYSIT 375 (376)
T ss_dssp ----EEEEEBTTSCEEEEE
T ss_pred ----EEEEEeCCCEEEEEe
Confidence 466777889888774
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00018 Score=71.44 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=92.0
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc--CCCcEEEEec------CCcEEEEccCCCCCcccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGC------KGGICIWAPSYPGNAASV 182 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--d~~~l~~~~~------dg~i~vw~~~~~~~~~~~ 182 (445)
+..|++++.|+.+..+|.. +|+.+.............+.-+| .++.++++.. ++.|..+|..+++..-..
T Consensus 117 ~~~v~v~~~dg~l~alD~~--tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAK--TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETT--TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECC--CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567778889999888874 57665554332111111111111 1245555433 478888988755433222
Q ss_pred cccccccccc----------ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC-----------------
Q 013338 183 RSGAASFLGA----------LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------------- 235 (445)
Q Consensus 183 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g----------------- 235 (445)
......+... -.+.....|.. .+. ......++++|+...++.+..+ +
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~----~~g-g~~w~~~a~d~~~~~vy~~~~~-g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKL----GGG-GTVWDSMAYDPELDLLYVGTGN-GSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH----CEE-CCCCSCEEEETTTTEEEEECCC-EESSCHHHHSTTCCCCTT
T ss_pred cccCCCCCccccccccccccccCCccceeee----CCC-CccccceEEcCCCCEEEEeCCC-CCccccCCCCCCCCCcee
Confidence 2110000000 00000011110 011 1223457888888888877655 3
Q ss_pred --eEEEEEccCCCceeeec---CC-------CCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCCcc
Q 013338 236 --SFTIWDVAQGLGTPIRR---GF-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE 289 (445)
Q Consensus 236 --~v~vwd~~~~~~~~~~~---~~-------~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~~ 289 (445)
.|..+|.++++...... |. .......+..+|+ .++.++.+|.++++|..+++..
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 49999999998754432 21 2222223334665 6888999999999999999863
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.5e-05 Score=70.34 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=94.6
Q ss_pred CeeEEEECcC--CCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 146 DVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 146 ~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
....|+|+|+ ++.|+++...+.|+.++.... . +..+... ......++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~-------------------------v~~~~~~-~~~P~giavd~d 192 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-Y-------------------------VDIKTTN-IGQCADVNFTLN 192 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-E-------------------------EEEECCC-CSCEEEEEECTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-E-------------------------EEEeecC-CCCccEEEECCC
Confidence 4678999984 456666654478888887521 1 1111112 256889999999
Q ss_pred CCeEEEEEec----CCeEEEEEccCCCc-eeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCc-cccc--CC
Q 013338 224 GRYLASASYE----SSSFTIWDVAQGLG-TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS--ST 294 (445)
Q Consensus 224 ~~~l~~~~~d----~g~v~vwd~~~~~~-~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~--~~ 294 (445)
|+ |+.+... ...+...+...+.. ............++++| +|..+++-..++.|+.+|..++.. ..+. ..
T Consensus 193 G~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 193 GD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp CC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred CC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 99 5555432 11234444333221 11222345677899999 666666666678999999987765 2222 11
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
......++|+|++++|+++......+..+.+.
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 22334699999999888787666777776653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0002 Score=63.96 Aligned_cols=157 Identities=7% Similarity=-0.037 Sum_probs=102.9
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc--eeeecCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccc
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~ 290 (445)
.+..++|++.+..|+.+....+.|..+++..+.. ......-.....+++.+.+..| ++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 5678999987677777665557899999887642 2223334567789999765555 455567899999998755433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccC--CCccceEEeCCCCCEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLA 366 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~ 366 (445)
+. ........+++.|.+..|+.+... ...+..+.+. +.....+.. -...+.++|+|+++.|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------------GSSRFIIINSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEETTTTEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------------CCCeEEEEECCCCCccEEEEeccCCEEE
Confidence 32 344567899999987777766432 3455555432 222222211 12568999999888888
Q ss_pred EEEcCCCcccceEEEEEEccCCC
Q 013338 367 VSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.+-... +.|..+|++...
T Consensus 182 ~aD~~~-----~~I~~~d~dG~~ 199 (318)
T 3sov_A 182 WADAKL-----NFIHKSNLDGTN 199 (318)
T ss_dssp EEETTT-----TEEEEEETTSCS
T ss_pred EEECCC-----CEEEEEcCCCCc
Confidence 775432 789999987543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00073 Score=68.65 Aligned_cols=264 Identities=12% Similarity=0.087 Sum_probs=156.5
Q ss_pred CcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec---------CCCCCeeEEEECcCCCcEEEEecCC
Q 013338 96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS---------DSQRDVKVLEWRPNGGRSLSVGCKG 166 (445)
Q Consensus 96 ~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~---------~~~~~v~~l~~spd~~~l~~~~~dg 166 (445)
-+....|.++...++|.+-+ |+.++-|..++... +.. ..... -....|.++...++ +.|.++..++
T Consensus 309 ~l~~~~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~~~ 383 (781)
T 3v9f_A 309 SLSNASARYIFQDSFNNIWI-GTWGGGINFISNAP--PTF-HTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTDGG 383 (781)
T ss_dssp SBSSSCEEEEEECSSCCEEE-EEBSSCEEEECSSC--CSC-EEEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEBSS
T ss_pred CCCCCeEEEEEEeCCCCEEE-EecCCeEEEeCCCC--Ccc-eeeccCccccccCCCCCcceEEEEEcCC-CCEEEEeCCC
Confidence 34456799999999887554 66666677787642 221 11110 12356899999888 5677777677
Q ss_pred cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC
Q 013338 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL 246 (445)
Q Consensus 167 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~ 246 (445)
.+..|+..... ...... -.......|.++...++|++. .|+.+ +.+..+|..+++
T Consensus 384 Gl~~~~~~~~~-~~~~~~----------------------~~~~~~~~v~~i~~d~~g~lW-igt~~-~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 384 GINVFENGKRV-AIYNKE----------------------NRELLSNSVLCSLKDSEGNLW-FGTYL-GNISYYNTRLKK 438 (781)
T ss_dssp CEEEEETTEEE-EECC---------------------------CCCSBEEEEEECTTSCEE-EEETT-EEEEEECSSSCE
T ss_pred cEEEEECCCCe-EEEccC----------------------CCCCCCcceEEEEECCCCCEE-EEecc-CCEEEEcCCCCc
Confidence 78888865210 000000 001112578999988887644 45555 478999987775
Q ss_pred ceeeec---CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccC------CCCCeeEEEECCCCCeEEEEEcCC
Q 013338 247 GTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 247 ~~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
...... ....|.++...++|+.. .|+. +-|..||..+++...+.. ....|.++...++|++.+.+ ...
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~ 515 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGG 515 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSS
T ss_pred EEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCC
Confidence 544432 24678999888877644 4554 569999988876533321 13578999999999877644 222
Q ss_pred ceEEEEEeccCCCCccccccCcccccccccc---C--CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---G--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
+ +..++. . ...+..+. + ...|.++...++|.+.++. .. |.+..||.++++...
T Consensus 516 G-l~~~~~--~------------~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~------Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 516 G-VGIYTP--D------------MQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GE------GLVCFPSARNFDYQV 573 (781)
T ss_dssp C-EEEECT--T------------CCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TT------EEEEESCTTTCCCEE
T ss_pred C-EEEEeC--C------------CCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CC------CceEEECCCCCcEEE
Confidence 2 222221 1 01111111 1 1258899999999866544 34 665889888765442
Q ss_pred eeeeeeeeC-CCCCCCceeEeecCCC
Q 013338 393 LSLIGFIRG-PGDNPKPVAFSFHDKF 417 (445)
Q Consensus 393 ~~~~~~~~~-~~~~v~~v~~spdg~~ 417 (445)
.. ...+ ....|.++...++|++
T Consensus 574 ~~---~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 574 FQ---RKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp EC---GGGTCSCCCCCEEEECSSSCE
T ss_pred cc---ccCCCCCceEEEEEECCCCCE
Confidence 11 1111 2345777777777764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00011 Score=71.61 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=44.9
Q ss_pred EEEECCCCCeEEEEEec------------C---CeEEEEEccCCCceeeec---CCC----CeeE---EEEcCCCC---E
Q 013338 217 ALSWGPDGRYLASASYE------------S---SSFTIWDVAQGLGTPIRR---GFG----GLSI---LKWSPTGD---Y 268 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d------------~---g~v~vwd~~~~~~~~~~~---~~~----~v~~---~~~sp~g~---~ 268 (445)
.+++.++...++.+..+ + +.|..+|..+++...... +.. .+.. +...++|+ .
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 35566665566655421 0 258999999988754332 110 1112 22234674 5
Q ss_pred EEEEecCCeEEEEeCCCCCc
Q 013338 269 FFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 269 l~~~~~dg~v~iwd~~~~~~ 288 (445)
++.++.+|.++++|..+++.
T Consensus 319 v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEECTTSEEEEEETTTCCE
T ss_pred EEEeCCCcEEEEEECCCCCE
Confidence 67888899999999999886
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0013 Score=66.05 Aligned_cols=227 Identities=9% Similarity=-0.022 Sum_probs=137.9
Q ss_pred ECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCC
Q 013338 118 SGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRG 196 (445)
Q Consensus 118 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (445)
+....|+..+++. ... ..+. .....+..|+|.+..++|+.+.. .+.|+.+++........
T Consensus 401 an~~~Ir~i~l~~--~~~-~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~--------------- 461 (791)
T 3m0c_C 401 TNRHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------------- 461 (791)
T ss_dssp ECBSSEEEECTTS--CCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------
T ss_pred ccccceeEeeccC--Ccc-eeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------
Confidence 3445677777653 222 2222 24566889999987667766655 47788887762211000
Q ss_pred CCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEec-
Q 013338 197 PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKF- 274 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~- 274 (445)
....+... ......|++.+.++.|+.+....+.|.+.++.......+.. .......|+++|.+.+|+.+..
T Consensus 462 ------~~~vi~~~-l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 462 ------YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp ------CEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred ------eeEEEecC-CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence 00111111 24667899998887788776665799999998665544443 3467899999998666665543
Q ss_pred C-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCC-
Q 013338 275 D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGS- 350 (445)
Q Consensus 275 d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 350 (445)
. +.|...++.......+. ..-...+.|++++.+..|+.+-.....+..+.+.. .....+ ...
T Consensus 535 ~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG--------------~~~~~v~~~~~ 600 (791)
T 3m0c_C 535 TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKTILEDEK 600 (791)
T ss_dssp SSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEEEECTT
T ss_pred CCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC--------------CceEEEecCCC
Confidence 3 78999999876654433 23357889999998888888866666677666532 111111 111
Q ss_pred -C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 351 -Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 351 -~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ...+|++ ++.+|+.+.... +.|...+..+++.+
T Consensus 601 ~l~~P~glav--~~~~lYwtD~~~-----~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 601 RLAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV 636 (791)
T ss_dssp TTSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred ccCCCCEEEE--eCCEEEEEECCC-----CEEEEEeCCCCcce
Confidence 1 2345555 445666654432 67888887666543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00029 Score=65.97 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=94.1
Q ss_pred CeeEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C----cEEEEccC
Q 013338 101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPS 174 (445)
Q Consensus 101 ~v~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g----~i~vw~~~ 174 (445)
....++++| ++..|..+...+.|+.++++ +..+..+. ........|+|+++++.|+++... + .+.+++..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~---~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE---KEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT---TTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC---CCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 45556656555778778764 22233332 245568899999998767776652 2 22223322
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec--
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-- 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-- 252 (445)
+.... ...+.. ......++++|++..|+.+....+.|..++..++....+..
T Consensus 214 --g~~~~----------------------~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 214 --SGFKV----------------------ITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp --GTSCS----------------------EEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred --Cceee----------------------eeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC
Confidence 11000 011111 13567889999444555555444799999988765433322
Q ss_pred CCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCC
Q 013338 253 GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT 285 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~ 285 (445)
.......++|+|+|++|..+ ...+.|+.++.+.
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 23457899999999965544 5577899987664
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00037 Score=63.95 Aligned_cols=223 Identities=9% Similarity=-0.048 Sum_probs=118.7
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCC--------CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS--------QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~--------~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
++..+++++.++.+..+|.+ +++.+....... ...+.+. ...+++.+++++.++.|..+|..++...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~-- 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNAD--DGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVA-- 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETT--TCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEE--
T ss_pred ECCEEEEEcCCCeEEEEEcc--CCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEE--
Confidence 35567777888888888874 465544433211 2223222 2223468888888899999998733221
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe----
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL---- 257 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v---- 257 (445)
|.. .+.. ......... +..+++++.+ |.|..+|..+++..........+
T Consensus 127 -------------------W~~--~~~~---~~~~~p~~~--~~~v~v~~~~-g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 127 -------------------WQT--KVAG---EALSRPVVS--DGLVLIHTSN-GQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp -------------------EEE--ECSS---CCCSCCEEE--TTEEEEECTT-SEEEEEETTTCCEEEEEECCC-----C
T ss_pred -------------------EEE--eCCC---ceEcCCEEE--CCEEEEEcCC-CeEEEEECCCCcEEEEEeCCCCceeec
Confidence 111 0110 011111121 3467777777 79999999999876544433222
Q ss_pred --eEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCC-----------e-eEEEECCCCCeEEEEEcCCceEEEE
Q 013338 258 --SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF-----------V-TGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 258 --~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------v-~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
...... +..+++++.++.|..+|..+++.......... + ..... .+..++++. .++.+..+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~ 254 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTAL 254 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEE
Confidence 122222 45677888899999999999886322111100 1 11111 133444443 23444554
Q ss_pred EeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.. +++.+...... ....+.. ++..|+.++.+ +.|..+|..+++..
T Consensus 255 d~~-------------tG~~~w~~~~~-~~~~~~~--~~~~l~~~~~~------g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 255 DLR-------------SGQIMWKRELG-SVNDFIV--DGNRIYLVDQN------DRVMALTIDGGVTL 300 (376)
T ss_dssp ETT-------------TCCEEEEECCC-CEEEEEE--ETTEEEEEETT------CCEEEEETTTCCEE
T ss_pred ECC-------------CCcEEeeccCC-CCCCceE--ECCEEEEEcCC------CeEEEEECCCCcEE
Confidence 432 12222111111 1223333 45667777766 78999999998865
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00098 Score=67.01 Aligned_cols=159 Identities=12% Similarity=-0.008 Sum_probs=104.6
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCC----Cceeeec-CCCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~----~~~~~~~-~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++....|+.+....+.|+.+++... ....+.. ....+..|++.+.++.|+ +-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 567899999977777776655568999998753 2233333 456778899998876555 4455789999999876
Q ss_pred Cccccc-CCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCC
Q 013338 287 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g 362 (445)
....+. ........|+++|.+.+|+.+..+. ..+..+.+ ++.....+.... ....|++++.+
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~--------------dG~~~~~lv~~~l~~P~GLavD~~~ 569 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 569 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec--------------CCCceEEEEeCCCCCceEEEEecCC
Confidence 654443 3344688999999877787664333 44555554 222222222222 67899999888
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
..|+.+-... +.|...++.....
T Consensus 570 ~~LYwaD~~~-----~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 570 GRLYWVDSKL-----HSISSIDVNGGNR 592 (791)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCSC
T ss_pred CeEEEEeCCC-----CcEEEEecCCCce
Confidence 8888775432 7899999875443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0016 Score=55.62 Aligned_cols=197 Identities=10% Similarity=0.084 Sum_probs=120.1
Q ss_pred EeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEEEEcCCCCEEEEEecCCeEEEEe
Q 013338 205 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWE 282 (445)
Q Consensus 205 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd 282 (445)
+.+.+-. ..+..++|+|++..|++.....+.|...|+. ++..... ......-.+++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~-~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGIT-NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCC-SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcc-cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3455554 5799999999887777766555789999988 6554433 3346788899998888777766678999998
Q ss_pred CCCCCc------ccc----cCCCCCeeEEEECCCCCeEEEEEcCCc-eEEEEEeccCCCCccccccCccccccccccCCC
Q 013338 283 TNTWTS------EPW----SSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ 351 (445)
Q Consensus 283 ~~~~~~------~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (445)
+..... ..+ ...+.....++|+|.++.|+++...+. .++.++ ........... ...... -..+.
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~--~~~~~~-~~~~~ 172 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHIS--KDKALQ-RQFTL 172 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEE--ECHHHH-HTCCS
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeee--cchhhc-ccccc
Confidence 765442 111 123455789999999988887766543 444443 11111000100 000000 00111
Q ss_pred -ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC------CCCCCceeEeecCC
Q 013338 352 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP------GDNPKPVAFSFHDK 416 (445)
Q Consensus 352 -~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~v~~v~~spdg~ 416 (445)
.+.+++++|....|...|..+ ..|..+|.+.. .+....+. .+. -...-.|+|.++|+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s-----~~L~~~d~~g~-~~~~~~L~--~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHES-----RALQEVTLVGE-VIGEMSLT--KGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTT-----TEEEEECTTCC-EEEEEECS--TTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCC-----CeEEEEcCCCC-EEEEEEcC--CccCCcccccCCCCeeEECCCCC
Confidence 578999999876666666553 78999997743 33221111 111 11346889999886
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-05 Score=78.01 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=127.5
Q ss_pred CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCC---CCcccccccccccccccc
Q 013338 119 GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASFLGALS 194 (445)
Q Consensus 119 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~---~~~~~~~~~~~~~~~~~~ 194 (445)
..+.|+..+++. ... ..+ ......+..|+|++.++.|+.+.. .+.|+.+++... .....+
T Consensus 384 ~~~~I~~id~~~--~~~-~~~-~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~------------ 447 (699)
T 1n7d_A 384 NRHEVRKMTLDR--SEY-TSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV------------ 447 (699)
T ss_dssp CTTC-CEECTTS--CCE-ECC-SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB------------
T ss_pred CccceEEEeCCC--Ccc-eee-eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE------------
Confidence 345677777642 222 112 123345778999987677766654 478888887631 011110
Q ss_pred CCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEEEEe
Q 013338 195 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~ 273 (445)
+... ......+++.+.+..|+.+....+.|.++++.......+.. .......++++|.+.+|+.+.
T Consensus 448 ------------i~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td 514 (699)
T 1n7d_A 448 ------------ISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514 (699)
T ss_dssp ------------CCSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECC
T ss_pred ------------EeCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcc
Confidence 0001 12456788887666666654444689999987665544433 235678899999766555544
Q ss_pred c-C-CeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC
Q 013338 274 F-D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS 350 (445)
Q Consensus 274 ~-d-g~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (445)
. . +.|+++++.......+. ..-...+.|+|+|++..|+.+-.....+..+.+.... ...+......
T Consensus 515 ~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-----------~~~~~~~~~~ 583 (699)
T 1n7d_A 515 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------RKTILEDEKR 583 (699)
T ss_dssp CSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-----------CEEECCCSSS
T ss_pred cCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-----------eEEEEecCCc
Confidence 3 2 68888888754443322 2234567899999988888776666666666542110 0111111111
Q ss_pred C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 351 Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 351 ~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
. ....|++.. ..|+.+.... +.|..++..+++.+
T Consensus 584 ~~~P~glavd~--~~lywtd~~~-----~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 584 LAHPFSLAVFE--DKVFWTDIIN-----EAIFSANRLTGSDV 618 (699)
T ss_dssp CSSCCCCEEET--TEEEEECSTT-----TCEEEEETTTEEEE
T ss_pred CCCceEeEEEC--CEEEEEeCCC-----CeEEEEEccCCCce
Confidence 1 345566644 3555443332 78999998766544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00037 Score=65.18 Aligned_cols=153 Identities=13% Similarity=0.170 Sum_probs=89.5
Q ss_pred CeeEEEEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC-----cEEEEcc
Q 013338 101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-----GICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg-----~i~vw~~ 173 (445)
....++|+|+ +..|..+...+.|+.++.. ++... .+ .........++|+++|+ |+++...+ .+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~--~g~v~-~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV--NQYVD-IK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETT--TTEEE-EE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECC--CCEEE-Ee-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 4568999995 3444444444788888863 34332 23 23445689999999977 66655422 1222222
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeeec
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRR 252 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~~ 252 (445)
. .... ...... . ......++++|++..|+.+...++.|+.+|..++.. ..+..
T Consensus 215 ~--~~~~-------------------~~~~~~----~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 215 A--SGFT-------------------ERLSLC----N-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM 268 (433)
T ss_dssp G--GTTC-------------------CEEEEE----E-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE
T ss_pred C--CCee-------------------cccccc----c-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec
Confidence 1 0000 000111 1 135577899994445555554446899999887765 33322
Q ss_pred C--CCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 013338 253 G--FGGLSILKWSPTGDYFFAA-KFDGTFYLWETN 284 (445)
Q Consensus 253 ~--~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~ 284 (445)
. ......++|+|+|++|..+ ...+.|+.++..
T Consensus 269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 2 2334579999999966544 456799998865
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.8e-05 Score=76.57 Aligned_cols=206 Identities=11% Similarity=0.113 Sum_probs=116.9
Q ss_pred eEEEEccCCCEEEEEECCCe-------------------EEEEEccCCCCcceeEEecC-CC-------CCeeEEEECcC
Q 013338 103 QGVSWHQHKHIVAFISGSTQ-------------------VIVRDYEDSEGKDACILTSD-SQ-------RDVKVLEWRPN 155 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~-------------------i~iw~~~~~~~~~~~~~~~~-~~-------~~v~~l~~spd 155 (445)
..++++|++.++++++.++. |..+|.+ +|+.+-..... |. ..+.......+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~--TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~ 315 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD--TGEYVWHYQTTPGDAWDYTATQHMILAELPID 315 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT--TCCEEEEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc--CCceeEeeecCCcccccccCCCCcEEEeeccC
Confidence 36889999889988887763 7777774 57766554332 21 11212222234
Q ss_pred CC---cEEEEecCCcEEEEccCCCCCcccccccccccccc-------------cc--CCCCCceEEEEeecccCCCceeE
Q 013338 156 GG---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA-------------LS--RGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 156 ~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
|+ .++.+..+|.++++|..+++............... .. ..........-...+. ..-..
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg--~~w~~ 393 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA--HDWQP 393 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS--SCSSC
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc--cCCCc
Confidence 43 45566678999999988655432211110000000 00 0000000000000011 11234
Q ss_pred EEECCCCCeEEEEEec--------------------------------------------CCeEEEEEccCCCceeeecC
Q 013338 218 LSWGPDGRYLASASYE--------------------------------------------SSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d--------------------------------------------~g~v~vwd~~~~~~~~~~~~ 253 (445)
++++|+..++++...+ .|.|..||+.+++......+
T Consensus 394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~ 473 (689)
T 1yiq_A 394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY 473 (689)
T ss_dssp CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE
T ss_pred ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC
Confidence 7788877777665321 16899999999987665554
Q ss_pred CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-ccc-CCCCCeeEEEECCCCCeEEE
Q 013338 254 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILL 312 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~~~l~~ 312 (445)
........+...+..+++++.|+.|+.||.++++.. ++. .......-+.|..+|+..++
T Consensus 474 ~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 474 VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 444444466667889999999999999999999974 222 22222344677788875554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00045 Score=62.21 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=114.2
Q ss_pred CceeEEEECC--CCC-eEEEEEec--CCeEEEEEccCCCc-ee-ee--cC--CCCeeEEEEcCCCCEEEEEe--------
Q 013338 213 EQITALSWGP--DGR-YLASASYE--SSSFTIWDVAQGLG-TP-IR--RG--FGGLSILKWSPTGDYFFAAK-------- 273 (445)
Q Consensus 213 ~~v~~~~~sp--~~~-~l~~~~~d--~g~v~vwd~~~~~~-~~-~~--~~--~~~v~~~~~sp~g~~l~~~~-------- 273 (445)
.....+.+.+ +++ +|+++... +.+|.+|++..+.. .. +. .+ -...+++++.++|++.++..
T Consensus 112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 3556676655 454 45555332 24788888765432 11 11 12 35689999999999877654
Q ss_pred ---------cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 274 ---------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 274 ---------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
..|.|+.+|. ++...+...-...+.++|+||++.++++......++.+++.... .....
T Consensus 192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g----------~l~~~ 259 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW----------TLTPL 259 (355)
T ss_dssp HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS----------CEEEE
T ss_pred ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC----------cEecC
Confidence 1245666665 34433333334578999999999999887666677777664210 00111
Q ss_pred ccccCCCccceEEeCC-CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC-C-CCCCCceeEeecCCCCCCC
Q 013338 345 VSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-P-GDNPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 345 ~~~~~~~~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~v~~v~~spdg~~~~~~ 421 (445)
+.+......-.+++++ +|++.+++..++ +.|..|+..... ...+..++. + .+......|..||+...+.
T Consensus 260 ~~~~~~g~PDGi~vD~e~G~lwva~~~~g-----~~v~~~~P~~~~---~s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~ 331 (355)
T 3sre_A 260 RVLSFDTLVDNISVDPVTGDLWVGCHPNG-----MRIFFYDAENPP---GSEVLRIQDILSEEPKVTVVYAENGTVLQGS 331 (355)
T ss_dssp EEEECSSEEEEEEECTTTCCEEEEEESCH-----HHHHSCCTTSCC---CEEEEEEECTTSSSCEEEEEEEECSSSCCSE
T ss_pred EEEeCCCCCceEEEeCCCCcEEEEecCCc-----eEEEEECCCCCC---CCEEEEEEccCCCCcEEEEEEEcCCCEEEee
Confidence 1221122567889999 598877665442 445555544211 112222321 1 1222334477799987777
Q ss_pred eEEEEecCeeeEe
Q 013338 422 LLSVCWSSGFCCT 434 (445)
Q Consensus 422 ~l~~~~~~G~v~~ 434 (445)
..++-+ +|++.+
T Consensus 332 T~a~~~-~g~L~i 343 (355)
T 3sre_A 332 TVAAVY-KGKLLI 343 (355)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCEEEE
Confidence 777654 577654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00076 Score=61.24 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=127.0
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc-cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS-VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 223 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 223 (445)
....|+|.|+|+.++++...|.|++++.. +.... +... ..+..........++++|+
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~-------------------~~v~~~g~~g~~gia~~pdf 77 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGV-------------------PDVWAHGQGGLLDVVLAPDF 77 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSC-------------------CCCCCSTTCSEEEEEECTTH
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCC-------------------cccccCCCCCceeEEECCCC
Confidence 46899999997647777778988888743 11111 1000 0000111246789999996
Q ss_pred --CCeEEEEEec-------CCeEEEEEccCCC-----ceeee-c------CCCCeeEEEEcCCCCEEEEEec--------
Q 013338 224 --GRYLASASYE-------SSSFTIWDVAQGL-----GTPIR-R------GFGGLSILKWSPTGDYFFAAKF-------- 274 (445)
Q Consensus 224 --~~~l~~~~~d-------~g~v~vwd~~~~~-----~~~~~-~------~~~~v~~~~~sp~g~~l~~~~~-------- 274 (445)
+..|+.+... ...|..|++..+. ...+. . .......++|.|||.+.++.+.
T Consensus 78 ~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 78 AQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQ 157 (353)
T ss_dssp HHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGG
T ss_pred CCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccC
Confidence 5555544321 1257777765431 11111 1 1122467999999966555433
Q ss_pred -----CCeEEEEeCCCCC-------------cccccCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCc---
Q 013338 275 -----DGTFYLWETNTWT-------------SEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSL--- 332 (445)
Q Consensus 275 -----dg~v~iwd~~~~~-------------~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 332 (445)
.|.|.-+|.+..- ...+...-.....++|+| ++++.++-...+..+ .+.+-......
T Consensus 158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~d-ei~~i~~G~nyGwp 236 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGD-EINIPQKGKNYGWP 236 (353)
T ss_dssp CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCE-EEECCCTTCBCCTT
T ss_pred CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCc-EEeEeccCCcCCCC
Confidence 2467777776431 111111112367899999 565554332222112 22221110000
Q ss_pred -cc--cc-----cC--------ccccccccccCCCccceEEeCC-------CCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 333 -DA--HL-----LP--------VDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 333 -~~--~~-----~~--------~~~~~~~~~~~~~~v~~~~~sp-------~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
.. .. .. ....++..+..|..+..++|.. +|+++++.... +.|...+++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~------~~v~~~~~~~~~ 310 (353)
T 2g8s_A 237 LATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKD------KDVIVMSVNGDK 310 (353)
T ss_dssp TBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTT------TEEEEEEEETTE
T ss_pred CccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccC------CEEEEEEeCCCe
Confidence 00 00 00 0001122223333566777753 46655544333 778888877654
Q ss_pred eeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEE-EecCeeeEe
Q 013338 390 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGFCCT 434 (445)
Q Consensus 390 ~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~-~~~~G~v~~ 434 (445)
..... ..+.+....+..+++.|||.+ +.+ ...+|+|..
T Consensus 311 ~~~~~--~~~~~~~~rp~~v~~~pdG~l-----yv~td~~~g~I~r 349 (353)
T 2g8s_A 311 VTEDG--RILTDRGQRIRDVRTGPDGYL-----YVLTDESSGELLK 349 (353)
T ss_dssp EEEEE--EESGGGCCCEEEEEECTTSCE-----EEEECSTTEEEEE
T ss_pred EeeeE--EcccCCCCceeEEEECCCCcE-----EEEEeCCCCEEEE
Confidence 33211 122233346789999999873 333 235787754
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.003 Score=56.66 Aligned_cols=275 Identities=13% Similarity=0.166 Sum_probs=140.2
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec---CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
..+.++.|.+++..+|+ +..+.| +...+ .++.-..... .....+.++.|.+ +.+++++..+.|.. ....
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~D--gG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~--S~Dg 107 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRD--GGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH--TTDG 107 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESS--TTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE--ESST
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCC--CCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE--ECCC
Confidence 36889999888887774 556755 22322 2322222211 1244688999976 45666666664433 2211
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc-eeee-cCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIR-RGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~-~~~~-~~~ 254 (445)
+ ..|..+...... ...+..+.+.++++.++++ .+ |.|.. ....++. .... ...
T Consensus 108 G---------------------~tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~-g~v~~-S~DgG~tW~~~~~~~~ 162 (327)
T 2xbg_A 108 G---------------------QSWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NV-GAIYR-TKDSGKNWQALVQEAI 162 (327)
T ss_dssp T---------------------SSCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TT-CCEEE-ESSTTSSEEEEECSCC
T ss_pred C---------------------CCceECccccCC-CCCeEEEEEECCCCEEEEe-CC-ccEEE-EcCCCCCCEEeecCCC
Confidence 1 123322211111 1346677776666655554 34 44422 1222332 2222 335
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeC--CCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
..+..+++.+++.+++++...+..+-.|- .+.+... ......+..+.+.++++.++++.. +.+.... .+.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~--G~~~~s~-~D~---- 234 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNG--GKIAFSD-PDN---- 234 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETT--TEEEEEE-TTE----
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCC--ceEEEec-CCC----
Confidence 67889999999887776654333333442 2222221 234457888999999887765422 2222110 000
Q ss_pred cccccCcccccccc--ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCcee
Q 013338 333 DAHLLPVDLPDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA 410 (445)
Q Consensus 333 ~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~ 410 (445)
.. +...+.. +.....+.++++.+++..++++. + +.| ++..+.++.- ..+.........+.++.
T Consensus 235 -G~----tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~------g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~v~ 299 (327)
T 2xbg_A 235 -SE----NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-A------GAL-LCSQDGGQTW--QQDVDVKKVPSNFYKIL 299 (327)
T ss_dssp -EE----EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-T------TCE-EEESSTTSSC--EECGGGTTSSSCCCEEE
T ss_pred -CC----eeEeccCCcccCCcceEEEEecCCCEEEEEeC-C------CeE-EEeCCCCccc--EEcCccCCCCCCeEEEE
Confidence 00 1111111 11112578899999888777654 3 545 4445544322 11111112234678899
Q ss_pred EeecCCCCCCCeEEEEecCeeeEeee
Q 013338 411 FSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 411 ~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
|.++++ ++++| ++|.|..+.
T Consensus 300 ~~~~~~-----~~~~G-~~G~i~~~~ 319 (327)
T 2xbg_A 300 FFSPDQ-----GFILG-QKGILLRYV 319 (327)
T ss_dssp EEETTE-----EEEEC-STTEEEEEC
T ss_pred EECCCc-----eEEEc-CCceEEEEc
Confidence 976544 45555 678776554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.3e-05 Score=76.83 Aligned_cols=207 Identities=10% Similarity=0.088 Sum_probs=119.9
Q ss_pred eEEEEccCCCEEEEEECCC-------------------eEEEEEccCCCCcceeEEecC-CC-------CCeeEEEECcC
Q 013338 103 QGVSWHQHKHIVAFISGST-------------------QVIVRDYEDSEGKDACILTSD-SQ-------RDVKVLEWRPN 155 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~-------------------~i~iw~~~~~~~~~~~~~~~~-~~-------~~v~~l~~spd 155 (445)
..++++|++.+|+.++.++ .|..+|. .+|+.+...... |. .....+....+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~--~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP--DTGKYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC--CCCCEEEEEecCCCcccccccCCCcEEEecccC
Confidence 4678999998888887664 3666666 457766554332 21 12222333446
Q ss_pred C---CcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEE----------EeecccC-CCceeEEEEC
Q 013338 156 G---GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV----------DFLRSQN-GEQITALSWG 221 (445)
Q Consensus 156 ~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~v~~~~~s 221 (445)
| ..++.+..+|.+.++|..+++...............+. ...+.... ..+.+.. ...-..++++
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d 401 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence 6 35666667899999998865543322211100000000 00000000 0000000 0111367888
Q ss_pred CCCCeEEEEEec------------------------------------------CCeEEEEEccCCCceeeecCCCCeeE
Q 013338 222 PDGRYLASASYE------------------------------------------SSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 222 p~~~~l~~~~~d------------------------------------------~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
|++.++++...+ .|.|..||+.+++......+...+..
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 481 (677)
T 1kb0_A 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG 481 (677)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC
Confidence 888877775431 15899999999987665555555666
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCccc-cc-CCCCCeeEEEECCCCCeEEEE
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~~~~l~~~ 313 (445)
..+...+..+++++.|+.+++||.++++... +. .......-+.|..+|+.+++.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 6677788889999999999999999999732 22 233333456677888755543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00043 Score=65.09 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=95.9
Q ss_pred CeeEEEECc-CCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE---
Q 013338 146 DVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--- 220 (445)
Q Consensus 146 ~v~~l~~sp-d~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 220 (445)
....|+|+| +.+.|+++... +.|++.|+... ....+. ............++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~----------------------~~~~~~~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPL----------------------NINTIPTNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEE----------------------CCTTSSCSBEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEE----------------------ccCccccCCCcEEEEeec
Confidence 467899998 45666666654 66777776621 111111 010001246889999
Q ss_pred ----CCCCCeEEEEEecCC------eEEEEEccC-CCce-----eeecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeC
Q 013338 221 ----GPDGRYLASASYESS------SFTIWDVAQ-GLGT-----PIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWET 283 (445)
Q Consensus 221 ----sp~~~~l~~~~~d~g------~v~vwd~~~-~~~~-----~~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~ 283 (445)
+++++.|+++...++ .|.+++... +... ...........++++|+ +.++++-..++.|+.+|+
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 999997777765521 266665443 2221 11212235568899995 454556667888999999
Q ss_pred C-------CCCc------c------ccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 284 N-------TWTS------E------PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 284 ~-------~~~~------~------~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
. ++.. . .+. ........++|+|+|+.|+++-.....++.+...
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 7 5543 0 111 2234567899999999878776666677776653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=78.62 Aligned_cols=196 Identities=12% Similarity=-0.029 Sum_probs=111.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccC----CCceeee-cCCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIR-RGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~----~~~~~~~-~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~ 286 (445)
..+..++|++.+..|+.+....+.|+.+++.. .....+. .....+..+++.+.+..| ++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45678999998778877765546899999875 2222222 222456678888655444 44455778999999876
Q ss_pred CcccccC-CCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCC--CccceEEeCCCC
Q 013338 287 TSEPWSS-TSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g 362 (445)
....+.. .......++++|.+.+|+.+.... ..+..+.+ .+.....+... ...+.|+|+|++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~l~~~~l~~PnGlavd~~~ 551 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 551 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS--------------SSCCCCEESCSSCSSCCCEEECTTT
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC--------------CCCCeeEEEeCCCCCccEEEEeccC
Confidence 5544332 234567899999877777553221 23333222 11111112111 157899999998
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.|+.+.... +.|.++++........ + ...........|++..+ .++-+.|.+++|..++
T Consensus 552 ~~LY~aD~~~-----~~I~~~d~dG~~~~~~--~-~~~~~~~~P~glavd~~------~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 552 GRLYWVDSKL-----HSISSIDVNGGNRKTI--L-EDEKRLAHPFSLAVFED------KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CCEEEEETTT-----TEEEEECSSSSCCEEE--C-CCSSSCSSCCCCEEETT------EEEEECSTTTCEEEEE
T ss_pred CEEEEEecCC-----CeEEEEccCCCceEEE--E-ecCCcCCCceEeEEECC------EEEEEeCCCCeEEEEE
Confidence 7777765432 7899999875332211 1 11111123345555332 2444556666666554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00095 Score=60.60 Aligned_cols=240 Identities=12% Similarity=0.112 Sum_probs=119.5
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 223 (445)
.....++|.|+|+ ++++...+.|.+++ . +....+... ..... .......++|+|+
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~--g~~~~~~~~-------------------~v~~~-g~~~p~gia~~pdf 86 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR-E--GRLSTYAEL-------------------SVYHR-GESGLLGLALHPRF 86 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE-T--TEEEEEEEC-------------------CCCCS-TTCSEEEEEECTTT
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE-C--CCccEeecc-------------------eEeec-CCCCceeEEECCCC
Confidence 3567999999965 77777779888887 2 111111000 00111 1256889999998
Q ss_pred --CCeEEEEEecC-----CeEEEEEccCCCc---eeee---c----CCCCeeEEEEcCCCCEEEEEec------------
Q 013338 224 --GRYLASASYES-----SSFTIWDVAQGLG---TPIR---R----GFGGLSILKWSPTGDYFFAAKF------------ 274 (445)
Q Consensus 224 --~~~l~~~~~d~-----g~v~vwd~~~~~~---~~~~---~----~~~~v~~~~~sp~g~~l~~~~~------------ 274 (445)
+..|+++.... +.|..|+...+.. ..+. . .......++|.|+|.+.++.+.
T Consensus 87 ~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 87 PQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTC
T ss_pred CCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCC
Confidence 55666554421 3688888765421 1111 1 1123468999999976665432
Q ss_pred -CCeEEEEeCCCC-------------CcccccCCCCCeeEEEECC-CCCeEEEEEcCCceE-----EEEEeccCCCCcc-
Q 013338 275 -DGTFYLWETNTW-------------TSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTL-----GSIHFASKPPSLD- 333 (445)
Q Consensus 275 -dg~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~- 333 (445)
.+.|.-++.+.. ....+...-.....++|+| ++++.++-... ..+ ..+.+-......-
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~-~~~~~~~~dei~~i~~G~nyGw 245 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGP-SGEQGYGHDEVNLIVPGGNYGW 245 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCT
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCC-CCCCCCCCeEEEEeccCCcCCC
Confidence 256777776541 1111111112356789999 56554433222 221 0122111110000
Q ss_pred ----c-cccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe-e-eeeeeeeeeCCCCCC
Q 013338 334 ----A-HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-I-SLSLIGFIRGPGDNP 406 (445)
Q Consensus 334 ----~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~v 406 (445)
. ...+-...++..+..+.....++| .+|..+++.... +.|...+++.... . .......+. ....+
T Consensus 246 p~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~------~~v~~v~~~~~~~~~~~~~~~~~~~-~~~rp 317 (352)
T 2ism_A 246 PRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG------QALLRLVLEGERGRWRVLRVETALS-GFGRL 317 (352)
T ss_dssp TTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT------TEEEEEEEEEETTEEEEEEEEEEEE-SSCCE
T ss_pred CcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC------CEEEEEEECCCCcceeecchheecc-cCCCe
Confidence 0 000000112223333335667777 566655544333 6777777764331 1 011111222 23567
Q ss_pred CceeEeecCCC
Q 013338 407 KPVAFSFHDKF 417 (445)
Q Consensus 407 ~~v~~spdg~~ 417 (445)
..+++.|||.+
T Consensus 318 ~~v~~~pdG~l 328 (352)
T 2ism_A 318 REVQVGPDGAL 328 (352)
T ss_dssp EEEEECTTSCE
T ss_pred eEEEECCCCcE
Confidence 89999999863
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0046 Score=56.07 Aligned_cols=238 Identities=12% Similarity=0.126 Sum_probs=121.3
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD- 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~- 223 (445)
.....|+|.|+| .++++..++.|++++.. +. ..+... . ...........++++|+
T Consensus 29 ~~P~~ia~~pdG-~l~V~e~~g~I~~~d~~--G~-~~~~~~-------------------~-v~~~g~~g~~gia~~pdf 84 (354)
T 3a9g_A 29 EVPWSIAPLGGG-RYLVTERPGRLVLISPS--GK-KLVASF-------------------D-VANVGEAGLLGLALHPEF 84 (354)
T ss_dssp SCEEEEEEEETT-EEEEEETTTEEEEECSS--CE-EEEEEC-------------------C-CCCSTTCSEEEEEECTTT
T ss_pred CCCeEEEEcCCC-eEEEEeCCCEEEEEeCC--Cc-eEeecc-------------------c-eeecCCCceeeEEeCCCC
Confidence 457899999995 57777777999888632 21 111100 0 00111256889999997
Q ss_pred --CCeEEEEEec---C----CeEEEEEccCC--C---ceeee---c--CCCCeeEEEEcCCCCEEEEEec----------
Q 013338 224 --GRYLASASYE---S----SSFTIWDVAQG--L---GTPIR---R--GFGGLSILKWSPTGDYFFAAKF---------- 274 (445)
Q Consensus 224 --~~~l~~~~~d---~----g~v~vwd~~~~--~---~~~~~---~--~~~~v~~~~~sp~g~~l~~~~~---------- 274 (445)
+..|+++... + ..|..|+.... . ...+. . .......++|.|||.+.++.+.
T Consensus 85 ~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~ 164 (354)
T 3a9g_A 85 PKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDL 164 (354)
T ss_dssp TTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCT
T ss_pred CcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCC
Confidence 5555554331 1 26777877654 1 11111 1 1123567999999986666432
Q ss_pred ---CCeEEEEeCCCC--------Ccccc-cCCCCCeeEEEECC-CCCeEEEEEcCCceEEEEEeccCCCCcc-----c-c
Q 013338 275 ---DGTFYLWETNTW--------TSEPW-SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLD-----A-H 335 (445)
Q Consensus 275 ---dg~v~iwd~~~~--------~~~~~-~~~~~~v~~~~~sp-~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~-~ 335 (445)
.|.|.-++.+.. ....+ .++ .....++|+| ++++.+ +-........+.+-......- . .
T Consensus 165 ~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v-~d~g~~~~dei~~i~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 165 SSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVA-TEHGPVGHDEVNIILKGGNYGWPLATGKA 242 (354)
T ss_dssp TCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEE-EECCSSSCCEEEEECTTCBCCTTTCCSCC
T ss_pred CCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEE-EecCCCCCcEEEEecCCCcCCCCcccCCC
Confidence 256776766542 11111 122 2356799999 566554 432222111222211110000 0 0
Q ss_pred ccCccccccccc-cCCCccceEEeC-------CCCCEEEEEEcCCCcccceEEEEEEccCC-CeeeeeeeeeeeCCCCCC
Q 013338 336 LLPVDLPDIVSL-TGSQGIEKIAWD-------ASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 336 ~~~~~~~~~~~~-~~~~~v~~~~~s-------p~g~~l~~~s~d~~d~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~v 406 (445)
..+-...++..+ ..+.....++|. .+|+++++.... +.|...+++.. +.... ...+.+....+
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~------~~v~~~~~~~~g~~~~~--~~~~~~~~~rp 314 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG------SMLAAVNFGDNMEVRKI--STFFKNVFGRL 314 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT------TEEEEEEECGGGCEEEE--EEECTTTSCCE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC------CEEEEEEECCCCcccce--eeeccCCCCCe
Confidence 000001122233 233367788884 467666554333 67888888743 33211 11222334567
Q ss_pred CceeEeecCC
Q 013338 407 KPVAFSFHDK 416 (445)
Q Consensus 407 ~~v~~spdg~ 416 (445)
..+++.|||.
T Consensus 315 ~~v~~~pDG~ 324 (354)
T 3a9g_A 315 RDVVIDDDGG 324 (354)
T ss_dssp EEEEECTTSC
T ss_pred eEEEECCCCc
Confidence 8999999986
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0024 Score=62.56 Aligned_cols=229 Identities=10% Similarity=0.003 Sum_probs=136.7
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+. .....|+..+++... ....+....-..+..|+|++.++.++.+.. .+.|..++++.......+
T Consensus 11 ~~~~-~~~~~I~~i~~~~~~--~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v--------- 78 (619)
T 3s94_A 11 LLLY-ANRRDLRLVDATNGK--ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--------- 78 (619)
T ss_dssp CEEE-ECSSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE---------
T ss_pred eEEE-eccccEEEEeCCCCc--ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE---------
Confidence 3443 356778888875321 112222234456789999998777777655 477888877622111111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~ 270 (445)
+... -.....+++++.++.|+.+....+.|.+.++.......+. ..-.....++++|.+.+|.
T Consensus 79 ---------------~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly 142 (619)
T 3s94_A 79 ---------------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMY 142 (619)
T ss_dssp ---------------ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEE
T ss_pred ---------------EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEE
Confidence 1111 1467899999977777777665579999999876655544 3456788999999866665
Q ss_pred EEec--CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
.+.. .+.|...+++......+. ..-...+.+++++++..|+.+-.....+..+++.. .....+
T Consensus 143 ~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--------------~~~~~~ 208 (619)
T 3s94_A 143 WTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAV 208 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--------------CEEC--
T ss_pred EeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--------------CccEEE
Confidence 5543 467888888765543332 33456789999999888888866555566555421 111111
Q ss_pred cC-CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 348 TG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 348 ~~-~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
.. .. ...++++..+ .|+.+.... +.|...|..+++.
T Consensus 209 ~~~~~~~P~gi~~~~~--~ly~td~~~-----~~V~~~d~~tg~~ 246 (619)
T 3s94_A 209 VKGSLPHPFALTLFED--ILYWTDWST-----HSILACNKYTGEG 246 (619)
T ss_dssp -------CCCEEESSS--EEEEECTTT-----CSEEEEESSSCCC
T ss_pred EeCCCCCceEEEEeCC--EEEEecCCC-----CEEEEEECCCCcc
Confidence 11 11 3567777655 555553322 6788888876653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0014 Score=61.60 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=93.2
Q ss_pred CeeEEEEcc-CCC-EEEEEECCCeEEEEEccCCCCcceeEEecC--CCCCeeEEEE-------CcCCCcEEEEecCC-c-
Q 013338 101 DLQGVSWHQ-HKH-IVAFISGSTQVIVRDYEDSEGKDACILTSD--SQRDVKVLEW-------RPNGGRSLSVGCKG-G- 167 (445)
Q Consensus 101 ~v~~~~~sp-~g~-~la~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~l~~-------spd~~~l~~~~~dg-~- 167 (445)
....|+|+| ++. ++++....+.|++.|++ ++........+ .......|+| ++++..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~--~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK--NRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETT--TTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECC--CCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 344 44444344566666653 33332222221 1235899999 99987677776543 2
Q ss_pred -----EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 168 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 168 -----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
|.+++....+..... . .+..+..+ .....++++|++..|+++...++.|..+|+
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~--~--------------~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDR--S--------------DIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTT--S--------------CEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred ccCceEEEEecCCCCceeec--c--------------cceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 444443311111000 0 00112222 244678899977777777766679999999
Q ss_pred c-------CCCc------------eeee--cCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCC
Q 013338 243 A-------QGLG------------TPIR--RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETN 284 (445)
Q Consensus 243 ~-------~~~~------------~~~~--~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~ 284 (445)
. ++.. ..+. ......+.++|+|+|++|..+ +..+.|+.++..
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 8 5543 1221 223456899999999965544 556789986654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0053 Score=60.25 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=107.3
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCCccc
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~ 290 (445)
..+..++|++.+..|+.+....+.|..+++.......+... ...+..+++.+.+..|. +-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 46789999998788887766557999999887655554443 35678899987766555 44556799999998765433
Q ss_pred cc-CCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCC-CccceEEeCCCCCEEEE
Q 013338 291 WS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAV 367 (445)
Q Consensus 291 ~~-~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~ 367 (445)
+. ..-.....+++.|...+|+.+..+ ...+..+.+ ++.....+... .....++++++++.|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~--------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM--------------DGSERTTLVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCSCEEEECSCSSEEEEEEETTTTEEEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC--------------CCCceEEEECCCCCcceEEEccccCEEEE
Confidence 32 334567899999977777766422 344554443 22222222222 26789999999888888
Q ss_pred EEcCCCcccceEEEEEEccCCCe
Q 013338 368 SYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 368 ~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+-... +.|..+|+.....
T Consensus 183 aD~~~-----~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 183 TDLDT-----NLIESSNMLGLNR 200 (628)
T ss_dssp EETTT-----TEEEEEETTSCSC
T ss_pred EECCC-----CEEEEEcCCCCce
Confidence 75542 7899999876443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0029 Score=55.83 Aligned_cols=218 Identities=11% Similarity=0.151 Sum_probs=122.9
Q ss_pred EccCCCEEEEEEC--CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCC------------cEEEEc
Q 013338 107 WHQHKHIVAFISG--STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG------------GICIWA 172 (445)
Q Consensus 107 ~sp~g~~la~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg------------~i~vw~ 172 (445)
|+.+|.+|+.... ++. ||.++. +|.....+.. .. +--++++++.|+.+.... .-.||.
T Consensus 21 ~~~~g~~iy~~n~~d~~~--ly~~~~-dg~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGR--LYAMNI-DGSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTE--EEEEET-TSCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCce--EEEEcC-CCCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 4568888887753 444 454442 3444444432 12 345578888888886542 223333
Q ss_pred cCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE---ecCCeEEEEEccCCCcee
Q 013338 173 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~g~v~vwd~~~~~~~~ 249 (445)
+...+..... +.. . .+..|++++++|+... .....|...++.......
T Consensus 93 i~~dg~~~~~------------------------l~~---~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~ 143 (302)
T 3s25_A 93 IKRNGHGSTV------------------------LDP---D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK 143 (302)
T ss_dssp EETTSCCCEE------------------------EEC---S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE
T ss_pred EeCCCCcceE------------------------eec---C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE
Confidence 3322221111 110 1 1236788999999886 222366666776655666
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCC-ceEEEEEecc
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFAS 327 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~ 327 (445)
+..+.. .+++|+++.|.-.+. ..+|++.++..+..+.+.. +... ..++|++.+|+.....+ ..+..+.+
T Consensus 144 lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~l-- 214 (302)
T 3s25_A 144 IKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNI-- 214 (302)
T ss_dssp EESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECS--
T ss_pred EeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEEC--
Confidence 665533 456778898886665 5789999988776555432 2222 34569999998764332 23444443
Q ss_pred CCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 328 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
++.....+... .+ ..|+|++++|+.++.... +.|..-+++...
T Consensus 215 ------------dG~~~~~Lt~~-~~--~~~~~~g~~Iy~~~~~~~----~~i~~~~~DG~~ 257 (302)
T 3s25_A 215 ------------NNPNPVVLTEA-NI--EHYNVYGSLIFYQRGGDN----PALCVVKNDGTG 257 (302)
T ss_dssp ------------SSCCCEECSCS-CE--EEEEEETTEEEEEECSSS----CEEEEEETTSCC
T ss_pred ------------CCCCeEEEeCC-Cc--ceEEECCCEEEEEECCCC----cEEEEEECCCCc
Confidence 22223333222 22 348889999987643221 677777777543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0023 Score=57.62 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=115.3
Q ss_pred eeEEEEccCCCEEEEE------------ECCCeEEEEEccCCCCcceeEEecC-----CCCCeeEEEECc--CCC-cEEE
Q 013338 102 LQGVSWHQHKHIVAFI------------SGSTQVIVRDYEDSEGKDACILTSD-----SQRDVKVLEWRP--NGG-RSLS 161 (445)
Q Consensus 102 v~~~~~sp~g~~la~~------------~~d~~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~l~~sp--d~~-~l~~ 161 (445)
.-.++..|+|..+.++ ..+|.|.++|.+..+.+.......+ ..-....+.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3466778887665554 2688999999864434332222112 123567777765 343 4555
Q ss_pred Eec---CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------
Q 013338 162 VGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ 232 (445)
Q Consensus 162 ~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------ 232 (445)
+.. +.+|.+|+++..+. ...++..+.+..-...+.+.+.++|++.++...
T Consensus 132 vnh~~~~s~ielf~~d~~~~---------------------~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~ 190 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEK---------------------SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY 190 (355)
T ss_dssp EECSTTCCEEEEEEEETTTT---------------------EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred EECCCCCCeEEEEEEECCCC---------------------EEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence 532 36788888773322 123455566555567899999999987665431
Q ss_pred ----------cCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCC-CCc--ccccCCCCCe
Q 013338 233 ----------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT-WTS--EPWSSTSGFV 298 (445)
Q Consensus 233 ----------d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~-~~~--~~~~~~~~~v 298 (445)
..|.|..+|. ++...+...-...+.++|+||+++|.++. ..+.|+.|++.. ++. ..........
T Consensus 191 ~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P 268 (355)
T 3sre_A 191 LKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV 268 (355)
T ss_dssp HHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred cccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC
Confidence 1134555554 44444444456789999999999887665 578999999864 333 1111334567
Q ss_pred eEEEECC-CCCeEEEE
Q 013338 299 TGATWDP-EGRMILLA 313 (445)
Q Consensus 299 ~~~~~sp-~~~~l~~~ 313 (445)
-.+++.+ +|++.+++
T Consensus 269 DGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 269 DNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEEEECTTTCCEEEEE
T ss_pred ceEEEeCCCCcEEEEe
Confidence 7888988 58876644
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.006 Score=55.28 Aligned_cols=233 Identities=10% Similarity=0.081 Sum_probs=117.1
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE--E--ecCCCCCeeEEEECcC---CCcEEEEecC------CcE
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--L--TSDSQRDVKVLEWRPN---GGRSLSVGCK------GGI 168 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~--~--~~~~~~~v~~l~~spd---~~~l~~~~~d------g~i 168 (445)
-..++|.|+|++++ +..++.|.+++ + ++.... + ..........|+|+|+ ++.++++... +.|
T Consensus 33 P~~ia~~pdG~l~V-~e~~g~I~~i~-~---g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLI-AERPGRIRLFR-E---GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEE-EETTTEEEEEE-T---TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcCCCeEEE-EeCCCeEEEEE-C---CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 56899999999665 45678888887 2 322111 1 1122456899999998 5666655442 456
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeec--ccCCCceeEEEECCCCCeEEEEEec------------C
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYE------------S 234 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d------------~ 234 (445)
..|+.... ... . .-.++..+. .........++|.|||.+.++.+.. .
T Consensus 108 ~r~~~~~~-~~~---~---------------~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~ 168 (352)
T 2ism_A 108 VRLRHLGE-RGV---L---------------DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLG 168 (352)
T ss_dssp EEEEECSS-CEE---E---------------EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSS
T ss_pred EEEEeCCC-CcC---c---------------eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCc
Confidence 66665521 110 0 001222222 1101234689999999665554321 1
Q ss_pred CeEEEEEccCC-------------CceeeecCCCCeeEEEEcC-CCCEEEEEecCCe--------EEEEeCCCCCc----
Q 013338 235 SSFTIWDVAQG-------------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT--------FYLWETNTWTS---- 288 (445)
Q Consensus 235 g~v~vwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~--------v~iwd~~~~~~---- 288 (445)
|.|..++.... ....+.........++|+| +|+.+++-...+. |.+. ..+..
T Consensus 169 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp 246 (352)
T 2ism_A 169 GKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWP 246 (352)
T ss_dssp SEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTT
T ss_pred eEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCC
Confidence 45666665431 1111122234577899999 5665554332222 3333 22221
Q ss_pred ------------ccc--cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc-cCCCcc
Q 013338 289 ------------EPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGI 353 (445)
Q Consensus 289 ------------~~~--~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 353 (445)
... ..+......++| .+|..+ ++.-....+..+.+........ ......+ .....+
T Consensus 247 ~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~-v~~~~~~~v~~v~~~~~~~~~~-------~~~~~~~~~~~~rp 317 (352)
T 2ism_A 247 RVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLY-VAGLRGQALLRLVLEGERGRWR-------VLRVETALSGFGRL 317 (352)
T ss_dssp TCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEE-EEETTTTEEEEEEEEEETTEEE-------EEEEEEEEESSCCE
T ss_pred cccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEE-EEECCCCEEEEEEECCCCccee-------ecchheecccCCCe
Confidence 000 012224566777 355544 4544445666666542210000 0001111 122268
Q ss_pred ceEEeCCCCCEEEEEE
Q 013338 354 EKIAWDASGERLAVSY 369 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s 369 (445)
.++++.|||.++++..
T Consensus 318 ~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 318 REVQVGPDGALYVTTS 333 (352)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEe
Confidence 9999999998766643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0038 Score=60.79 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=46.3
Q ss_pred EEEECCCCCeEEEEEecC---------------CeEEEEEccCCCceeeec---CCC-------CeeEEEEc-CCC---C
Q 013338 217 ALSWGPDGRYLASASYES---------------SSFTIWDVAQGLGTPIRR---GFG-------GLSILKWS-PTG---D 267 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~---------------g~v~vwd~~~~~~~~~~~---~~~-------~v~~~~~s-p~g---~ 267 (445)
.+++.++...++.+..+. +.|..+|.++++...... |.. ...-+... .+| +
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 345666666666665431 378999999998754332 111 11112222 467 4
Q ss_pred EEEEEecCCeEEEEeCCCCCc
Q 013338 268 YFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 268 ~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.++.++.+|.++++|.++++.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCE
T ss_pred EEEEECCCcEEEEEECCCCCE
Confidence 677788999999999999886
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.012 Score=53.33 Aligned_cols=233 Identities=11% Similarity=0.083 Sum_probs=118.9
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCc-ceeEE--ecCCCCCeeEEEECcC---CCcEEEEec----C----Cc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGK-DACIL--TSDSQRDVKVLEWRPN---GGRSLSVGC----K----GG 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~-~~~~~--~~~~~~~v~~l~~spd---~~~l~~~~~----d----g~ 167 (445)
-..++|.|+|++++ +..++.|.+++. +++ .+..+ ..........|+|+|+ ++.|+++.. + +.
T Consensus 31 P~~ia~~pdG~l~V-~e~~g~I~~~d~---~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 31 PWSIAPLGGGRYLV-TERPGRLVLISP---SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp EEEEEEEETTEEEE-EETTTEEEEECS---SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CeEEEEcCCCeEEE-EeCCCEEEEEeC---CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 57899999998665 456688888863 343 11111 0112356889999997 566665543 2 45
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec------------CC
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------SS 235 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------~g 235 (445)
|..|+...... .+... -.++..+..........++|.|||.+.++.+.. .|
T Consensus 107 v~r~~~~~~~~--~~~~~---------------~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 107 VIRGRLDGSTF--KLKEV---------------KTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEECSSSC--CEEEE---------------EEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEECCCCc--CcCcc---------------EEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 66666542210 00000 011222221111234679999999866664321 14
Q ss_pred eEEEEEccCC--------CceeeecCCCCeeEEEEcC-CCCEEEEEecCC---eEEEEeCCCCCc---------------
Q 013338 236 SFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDG---TFYLWETNTWTS--------------- 288 (445)
Q Consensus 236 ~v~vwd~~~~--------~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg---~v~iwd~~~~~~--------------- 288 (445)
.|..++.... ....+.........++|+| +|+.+++-...+ .|.+... +..
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCC
Confidence 5666655432 1112222234567899999 566554432221 2444322 110
Q ss_pred -c---cccCCCCCeeEEEEC-------CCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccc-ccCCC-ccce
Q 013338 289 -E---PWSSTSGFVTGATWD-------PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEK 355 (445)
Q Consensus 289 -~---~~~~~~~~v~~~~~s-------p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~ 355 (445)
. .+.........++|. .+|.+++ +.-....+..+.+..... ...... +.+.. .+.+
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v-~~~~~~~v~~~~~~~~g~----------~~~~~~~~~~~~~rp~~ 316 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLI-ACLRGSMLAAVNFGDNME----------VRKISTFFKNVFGRLRD 316 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEE-EETTTTEEEEEEECGGGC----------EEEEEEECTTTSCCEEE
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEE-EEcCCCEEEEEEECCCCc----------ccceeeeccCCCCCeeE
Confidence 0 110122356778884 4565544 544555666666542100 000111 12212 6889
Q ss_pred EEeCCCCCEEEEE
Q 013338 356 IAWDASGERLAVS 368 (445)
Q Consensus 356 ~~~sp~g~~l~~~ 368 (445)
+++.|||.++++.
T Consensus 317 v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 317 VVIDDDGGILIST 329 (354)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEECCCCcEEEEE
Confidence 9999999766654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0015 Score=64.84 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=53.6
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEe-cC-----CeEEEEeCCC
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAK-FD-----GTFYLWETNT 285 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~-~d-----g~v~iwd~~~ 285 (445)
...++++..+++.+++|+.+...+.+||..+++...+... ...-.+++..++|+.++.|+ .+ ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3445788899999999986646899999998766544322 12223456667999999888 34 4799999987
Q ss_pred CCc
Q 013338 286 WTS 288 (445)
Q Consensus 286 ~~~ 288 (445)
.+.
T Consensus 324 ~~W 326 (656)
T 1k3i_A 324 KTW 326 (656)
T ss_dssp TEE
T ss_pred Ccc
Confidence 654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0026 Score=56.10 Aligned_cols=158 Identities=15% Similarity=0.136 Sum_probs=104.3
Q ss_pred CeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec--ccCCCceeEEEE--
Q 013338 146 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSW-- 220 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~-- 220 (445)
-..+++|.+..+.++.++ ..++|..|+............. +. +.....+..+.|
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~---------------------~s~~g~~~~~~sGl~~~~ 72 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDG---------------------ASSNGDGEQQMSGLSLLT 72 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTT---------------------TCCSSCCSEEEEEEEESS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCC---------------------ccccCCCcceeeEEEEec
Confidence 345789988767777777 4699999998622211110000 00 111124578999
Q ss_pred -CCCCCeEEEEEe-------------cCCeEEEEEcc---CCCceeeec--------------CCCCeeEEEEcCCCCEE
Q 013338 221 -GPDGRYLASASY-------------ESSSFTIWDVA---QGLGTPIRR--------------GFGGLSILKWSPTGDYF 269 (445)
Q Consensus 221 -sp~~~~l~~~~~-------------d~g~v~vwd~~---~~~~~~~~~--------------~~~~v~~~~~sp~g~~l 269 (445)
.|+++++++... + ..|..||+. +++...... .......++..++|+..
T Consensus 73 ~D~~grL~vv~~~~~af~~~g~~~~g~-~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaY 151 (334)
T 2p9w_A 73 HDNSKRLFAVMKNAKSFNFADQSSHGA-SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSY 151 (334)
T ss_dssp SSSCCEEEEEEEETTTTCTTSCCSSSC-CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEE
T ss_pred cCCCCcEEEEEcccccccccccccCCC-CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEE
Confidence 688877776432 4 479999999 666543222 11358899999999999
Q ss_pred EEEecC-CeEEEEeCCCCCccccc------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 270 FAAKFD-GTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 270 ~~~~~d-g~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
++++.. +.|..++.+......+. ......+.|+++|+|+.|++... .+.+..+++.
T Consensus 152 Vt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 152 VAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp EEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred EeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 999888 88888888765443221 11223679999999999987765 6777777764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0076 Score=59.77 Aligned_cols=149 Identities=13% Similarity=0.058 Sum_probs=82.1
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCC---------CCe-eEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ---------RDV-KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------~~v-~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
+..|++++.++.+.-+|.. +|+.+-....... ..+ ..++. .++++++++.++.|..+|..+++..-
T Consensus 66 ~g~vyv~~~~~~v~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 141 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAA--SGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW 141 (668)
T ss_dssp TTEEEEEEGGGEEEEEETT--TCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEECCCCeEEEEECC--CChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence 4455566777777777763 4665554422111 000 12233 23677788788999999987443221
Q ss_pred ccccccccccccccCCCCCceEEEEeecccC-CCcee-EEEECCCCCeEEEEEe------cCCeEEEEEccCCCceeeec
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQIT-ALSWGPDGRYLASASY------ESSSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~-~~~~sp~~~~l~~~~~------d~g~v~vwd~~~~~~~~~~~ 252 (445)
..... ... ...+. ...+ .++ .++++.. + |.|..+|..+|+......
T Consensus 142 ~~~~~-----------------------~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~-g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 142 SQQTT-----------------------DPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVR-GFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEECS-----------------------CTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCB-CEEEEEETTTCCEEEEEE
T ss_pred eeccC-----------------------CCCCcceecCCCEE-ECC-EEEEeCCCCCcCCC-CEEEEEECCCCcEEEEec
Confidence 11100 000 00111 0011 133 4444432 4 689999999987754332
Q ss_pred C---C-----------------------------CCeeEEEEcCCCCEEEEEecCC-------------------eEEEE
Q 013338 253 G---F-----------------------------GGLSILKWSPTGDYFFAAKFDG-------------------TFYLW 281 (445)
Q Consensus 253 ~---~-----------------------------~~v~~~~~sp~g~~l~~~~~dg-------------------~v~iw 281 (445)
. . .....++++|+...++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 0 0112478888888888887766 39999
Q ss_pred eCCCCCcc
Q 013338 282 ETNTWTSE 289 (445)
Q Consensus 282 d~~~~~~~ 289 (445)
|.++++..
T Consensus 276 D~~tG~~~ 283 (668)
T 1kv9_A 276 RPDTGKLA 283 (668)
T ss_dssp CTTTCCEE
T ss_pred cCCCCcee
Confidence 99999873
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.02 Score=55.50 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=16.2
Q ss_pred CCcEEEEecCCcEEEEccCCC
Q 013338 156 GGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 156 ~~~l~~~~~dg~i~vw~~~~~ 176 (445)
+.++++++.++.+..+|..++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG 135 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCEEEEEECCCC
Confidence 467777778899999998743
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.001 Score=58.55 Aligned_cols=161 Identities=10% Similarity=0.060 Sum_probs=99.4
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecC-----C--CCeeEEEE---cCCCCEEEEEec-------
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRG-----F--GGLSILKW---SPTGDYFFAAKF------- 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~-----~--~~v~~~~~---sp~g~~l~~~~~------- 274 (445)
....+++|++....++.++.-+|+|..||...+....+ ... . ..+..+.| .|+++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 34568899886677777774448999999986644333 111 1 13678999 688777775442
Q ss_pred ------CCeEEEEeCC---CCCcccccC--------------CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC
Q 013338 275 ------DGTFYLWETN---TWTSEPWSS--------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS 331 (445)
Q Consensus 275 ------dg~v~iwd~~---~~~~~~~~~--------------~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (445)
+..|..||+. +++...... .......++..++|+..++....-.. ++++.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~- 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK- 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC-
Confidence 6789999999 666532111 12347899999999977755432133 333321110
Q ss_pred ccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 332 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
....+.... ...... ..+.++++|+|+.|++...+ +.|..+|+..
T Consensus 170 -~~~~~~~~~----~~~~~~~G~nGIv~~pdg~~Liv~~~~------g~L~~fD~~~ 215 (334)
T 2p9w_A 170 -TVSTFAWES----GNGGQRPGYSGITFDPHSNKLIAFGGP------RALTAFDVSK 215 (334)
T ss_dssp -CEEEEEECC----CCSSSCCSCSEEEEETTTTEEEEESSS------SSEEEEECSS
T ss_pred -EEeeeeecC----CCcccccCcceEEEeCCCCEEEEEcCC------CeEEEEcCCC
Confidence 000010000 001112 58899999999998887554 8899999874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.008 Score=58.48 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=47.8
Q ss_pred EEEECCCCCeEEEEEe--------------------cC---CeEEEEEccCCCceeeec---CCC----CeeE---EEEc
Q 013338 217 ALSWGPDGRYLASASY--------------------ES---SSFTIWDVAQGLGTPIRR---GFG----GLSI---LKWS 263 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~--------------------d~---g~v~vwd~~~~~~~~~~~---~~~----~v~~---~~~s 263 (445)
.++++|+..+++.+.. |+ +.|..+|..+++...... |.. .+.. +...
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 4677777777776653 11 489999999998765432 211 1111 1221
Q ss_pred -CCCC---EEEEEecCCeEEEEeCCCCCc
Q 013338 264 -PTGD---YFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 264 -p~g~---~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+|+ .++.++.+|.++++|.++++.
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 4674 678899999999999999886
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0073 Score=53.74 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=114.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcC----CCc--EEEEe-c---CCcEEEEccCCCC-C
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPN----GGR--SLSVG-C---KGGICIWAPSYPG-N 178 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd----~~~--l~~~~-~---dg~i~vw~~~~~~-~ 178 (445)
...+++.....+-+.+||+ +|+.+..+. .+.++.+..-|+ |+. +++++ . +++|++|+++... .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl---~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL---DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET---TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC---CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 3455666667888999998 477766653 256777777663 111 33333 3 4789999875221 1
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCC-CC-eEEEEEecCCeEEEEEccC---C----Cc
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GR-YLASASYESSSFTIWDVAQ---G----LG 247 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-~~-~l~~~~~d~g~v~vwd~~~---~----~~ 247 (445)
...+.... ..+... ...+..+++ +|. ++ ++++...+ |.+..|++.. + +.
T Consensus 113 l~~i~~~~------------------~pv~t~-~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~l 172 (355)
T 3amr_A 113 LQSMTDPD------------------HPIATA-INEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKK 172 (355)
T ss_dssp EEECSCTT------------------SCEECC-CSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEE
T ss_pred eeeccccc------------------cCcCCC-CCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceE
Confidence 11110000 000000 145666777 774 54 45555555 8999999843 2 22
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC-----CCccccc---CCCCCeeEEEE--CCCCC-eEEEEEcC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-----WTSEPWS---STSGFVTGATW--DPEGR-MILLAFAG 316 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-----~~~~~~~---~~~~~v~~~~~--sp~~~-~l~~~~~~ 316 (445)
.+.+...+.+-.|...+...+|+.+-++.-|+.|+.+. ++..... .....+..|++ .++++ +|++++.+
T Consensus 173 VR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG 252 (355)
T 3amr_A 173 VRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG 252 (355)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred EEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence 33444567899999999999999999998888888652 2222111 22346788887 56666 78777766
Q ss_pred CceEEEEEe
Q 013338 317 SLTLGSIHF 325 (445)
Q Consensus 317 ~~~~~~~~~ 325 (445)
+.....++.
T Consensus 253 ~~s~~Vydr 261 (355)
T 3amr_A 253 NSSYAIYDR 261 (355)
T ss_dssp GTEEEEEES
T ss_pred CCEEEEEEC
Confidence 655555554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0054 Score=54.10 Aligned_cols=178 Identities=8% Similarity=0.109 Sum_probs=105.9
Q ss_pred EEEEccCCCEEEEEECCC--------------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe--cCCc
Q 013338 104 GVSWHQHKHIVAFISGST--------------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGG 167 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~--------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~--~dg~ 167 (445)
+--++++|.+|+.+.... .|+..+++ +.....+.. .. +..|+++++.|+.+. .++.
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d---g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN---GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT---SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSC
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC---CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCC
Confidence 445689999999886432 44444543 323333322 11 237788888888876 3455
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
-.||.+...+..... +..+ .+ ..++++++.|+..+.....|.+.++..+..
T Consensus 129 ~~Iy~~~~dGs~~~~------------------------lt~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~ 179 (302)
T 3s25_A 129 TSLYRIRIDGEEKKK------------------------IKNH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE 179 (302)
T ss_dssp EEEEEEETTSCCCEE------------------------EESS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred ceEEEEECCCCCeEE------------------------EeCC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence 556555533222111 1111 11 356788899988776335888888877765
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecC--CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC-CceEEEEE
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIH 324 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~ 324 (445)
..+.. +... ..++|++++|+..... ..|..-+++......+... .+ ..|+|++++|+.+... ...+..+.
T Consensus 180 ~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~ 252 (302)
T 3s25_A 180 ALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVK 252 (302)
T ss_dssp EEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred EEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence 55543 2222 3466999998866543 4788888888776555432 23 4588899999876432 34455554
Q ss_pred e
Q 013338 325 F 325 (445)
Q Consensus 325 ~ 325 (445)
+
T Consensus 253 ~ 253 (302)
T 3s25_A 253 N 253 (302)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0049 Score=54.83 Aligned_cols=194 Identities=16% Similarity=0.194 Sum_probs=111.2
Q ss_pred CCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC----CCCe--EE
Q 013338 155 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRY--LA 228 (445)
Q Consensus 155 d~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~--l~ 228 (445)
..+.++.+...+.+.+||+. ++.... +. .+.++.+..-| .|+. ++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G~~l~~-------------------------~~---~g~~nnVD~r~~~~l~g~~~dla 89 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-GKMLHS-------------------------YN---TGKLNNVDIRYDFPLNGKKVDIA 89 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-SCEEEE-------------------------EC---CSCEEEEEEEEEEEETTEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcCC-CcEEEE-------------------------cc---CCCcccEEEecccccCCceEeEE
Confidence 33456666667899999995 333222 21 13455555444 2332 34
Q ss_pred EEE-ec--CCeEEEEEcc--CCCceeeec------CC-CCeeEEEE--cCC-CC-EEEEEecCCeEEEEeCC---CCCc-
Q 013338 229 SAS-YE--SSSFTIWDVA--QGLGTPIRR------GF-GGLSILKW--SPT-GD-YFFAAKFDGTFYLWETN---TWTS- 288 (445)
Q Consensus 229 ~~~-~d--~g~v~vwd~~--~~~~~~~~~------~~-~~v~~~~~--sp~-g~-~l~~~~~dg~v~iwd~~---~~~~- 288 (445)
.++ .+ +.+|.+|++. ++....+.. .. ..+..+++ +|. ++ ++++...+|.+..|++. .++.
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 443 33 3599999774 444333311 12 56777888 775 44 67788889999999883 3322
Q ss_pred ---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCC-C--ccceEEe--CC
Q 013338 289 ---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q--GIEKIAW--DA 360 (445)
Q Consensus 289 ---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~v~~~~~--sp 360 (445)
.........+..+...+....|+++-.. ..++.+....... . ....+..+... - .+..|++ .+
T Consensus 170 ~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~~-~-------~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 170 GKKVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDGG-S-------NGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp EEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTSC-S-------CCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred ceEEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCCC-C-------CceEEEEecCCccccCcceEEEEecC
Confidence 1222345678889999888888877554 3344444221110 0 11222222211 1 4677776 67
Q ss_pred CCC-EEEEEEcCCCcccceEEEEEEcc-CCCee
Q 013338 361 SGE-RLAVSYKGGDDIYKGLIAIYDAR-RTPLI 391 (445)
Q Consensus 361 ~g~-~l~~~s~d~~d~~d~~i~vwd~~-~~~~~ 391 (445)
+++ ||++++.+. +++.+||.+ +.+.+
T Consensus 241 ~g~gyLivSsQG~-----~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 241 DGKGYLMASSQGN-----SSYAIYDRQGKNKYV 268 (355)
T ss_dssp GGCEEEEEEEGGG-----TEEEEEESSTTCCEE
T ss_pred CCCEEEEEEcCCC-----CEEEEEECCCCCcEE
Confidence 777 788777652 689999997 44433
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.018 Score=51.58 Aligned_cols=239 Identities=12% Similarity=0.073 Sum_probs=119.9
Q ss_pred CCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 144 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 144 ~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
-...+.|+|.||| .++++.. .|.|++++.... ....+.. +..+..........++++|
T Consensus 31 L~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g-~~~~v~~-------------------~~~v~~~g~~GllGia~~P 89 (347)
T 3das_A 31 LNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTG-RKTELGE-------------------VPGVSPSGEGGLLGIALSP 89 (347)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTC-CEEEEEE-------------------CTTCCCBTTBSEEEEEECT
T ss_pred CCCceEEEEcCCC-cEEEEEecCCEEEEEECCCC-cEeeecc-------------------cCceeecCCCCceeeEecc
Confidence 4457899999996 5666666 798988875421 1111100 0001111135789999999
Q ss_pred C---CCeEEEE-E--ecCCeEEEEEccCCC--------ceeee-----cCCCCeeEEEEcCCCCEEEEEec---------
Q 013338 223 D---GRYLASA-S--YESSSFTIWDVAQGL--------GTPIR-----RGFGGLSILKWSPTGDYFFAAKF--------- 274 (445)
Q Consensus 223 ~---~~~l~~~-~--~d~g~v~vwd~~~~~--------~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~--------- 274 (445)
+ +.+|+.. + .+ +.|.-|.+..+. ...+. ........++|.|||.+.++.+.
T Consensus 90 df~~~g~lYv~yt~~~~-~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd 168 (347)
T 3das_A 90 DYASDHMVYAYFTSASD-NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQD 168 (347)
T ss_dssp THHHHCEEEEEEECSSS-EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTC
T ss_pred ccccCCEEEEEEecCCC-CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccC
Confidence 5 3445443 2 23 367667665421 11111 11224567999999987776542
Q ss_pred ----CCeEEEEeCCCCC--------cccc-cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc--
Q 013338 275 ----DGTFYLWETNTWT--------SEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV-- 339 (445)
Q Consensus 275 ----dg~v~iwd~~~~~--------~~~~-~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 339 (445)
.|.|.-++.+..- ...+ .++. ....++|+|+|++.++-...+..+..-.+... .. .-|+.
T Consensus 169 ~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G-~n---yGwP~~~ 243 (347)
T 3das_A 169 RKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPG-DN---YGWPEAE 243 (347)
T ss_dssp TTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTT-CB---CCTTTCC
T ss_pred CCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCC-CE---ecCCccc
Confidence 3556556655321 1111 1332 35679999988766644333322332222211 00 00110
Q ss_pred -------cccccccccCC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE
Q 013338 340 -------DLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF 411 (445)
Q Consensus 340 -------~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~ 411 (445)
...++..+..+ .....++|. +|..+...... +.|....++.+... ......+.+....+.+|+.
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~------~~l~~v~~~~~~~~-~~~e~~l~~~~gR~~dv~~ 315 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRG------ERLWRIPLKGTAAA-ADPQAFLEGEYGRLRTVAP 315 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTT------CSEEEEEEETTEES-SCCEEESTTTSSCEEEEEE
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEE-cCceeeccccC------CEEEEEEecCCcee-cceEEeecCCCCCccEEEE
Confidence 01112222222 245566665 35544444333 45555566543221 1112233444567889999
Q ss_pred eecCCC
Q 013338 412 SFHDKF 417 (445)
Q Consensus 412 spdg~~ 417 (445)
.|||.+
T Consensus 316 ~pDG~l 321 (347)
T 3das_A 316 AGGDKL 321 (347)
T ss_dssp EETTEE
T ss_pred CCCCcE
Confidence 999874
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.021 Score=51.02 Aligned_cols=230 Identities=15% Similarity=0.192 Sum_probs=120.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
..+.++.|++ +..++ ++..+.|.. ... .|+.-..... .+...+..+.+.++ +.+++++.++.| |.....
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~--S~D-gG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~v--~~S~Dg- 150 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH--TTD-GGQSWSQIPLDPKLPGSPRLIKALGN-GSAEMITNVGAI--YRTKDS- 150 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE--ESS-TTSSCEECCCCTTCSSCEEEEEEEET-TEEEEEETTCCE--EEESST-
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE--ECC-CCCCceECccccCCCCCeEEEEEECC-CCEEEEeCCccE--EEEcCC-
Confidence 4688899986 45444 445664433 221 2333222211 23455788888776 456666666644 222211
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEE-EEccCCCceee-ecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI-WDVAQGLGTPI-RRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~v-wd~~~~~~~~~-~~~~~ 255 (445)
...|..... .. ...+..+.+.+++++++++ .. |.+.. .|-.......+ .....
T Consensus 151 --------------------G~tW~~~~~--~~-~~~~~~~~~~~~~~~~~~g-~~-G~~~~S~d~gG~tW~~~~~~~~~ 205 (327)
T 2xbg_A 151 --------------------GKNWQALVQ--EA-IGVMRNLNRSPSGEYVAVS-SR-GSFYSTWEPGQTAWEPHNRTTSR 205 (327)
T ss_dssp --------------------TSSEEEEEC--SC-CCCEEEEEECTTSCEEEEE-TT-SSEEEEECTTCSSCEEEECCSSS
T ss_pred --------------------CCCCEEeec--CC-CcceEEEEEcCCCcEEEEE-CC-CcEEEEeCCCCCceeECCCCCCC
Confidence 123443322 22 2578899999988877665 34 44443 33211222222 22356
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-cccc----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
.+..+++.++++.++ ++.+|.+++.+.+.++. ..+. .....+.++.+.+++..++++.. +.+ +.-.+..
T Consensus 206 ~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~--g~i--~~S~DgG- 279 (327)
T 2xbg_A 206 RLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA--GAL--LCSQDGG- 279 (327)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST--TCE--EEESSTT-
T ss_pred ccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC--CeE--EEeCCCC-
Confidence 788999999887554 55678888775332332 1111 12235888999988887776532 222 2211111
Q ss_pred CccccccCccccccccccC-CCccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 331 SLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
. +...+..... +..+.++.|.++++.+++ +.+ |.|.-++
T Consensus 280 ----~----tW~~~~~~~~~~~~~~~v~~~~~~~~~~~-G~~------G~i~~~~ 319 (327)
T 2xbg_A 280 ----Q----TWQQDVDVKKVPSNFYKILFFSPDQGFIL-GQK------GILLRYV 319 (327)
T ss_dssp ----S----SCEECGGGTTSSSCCCEEEEEETTEEEEE-CST------TEEEEEC
T ss_pred ----c----ccEEcCccCCCCCCeEEEEEECCCceEEE-cCC------ceEEEEc
Confidence 0 1121221111 225788888766665544 445 6666554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.031 Score=52.45 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=37.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-------CCCCCeeEEEECcC---CCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-------DSQRDVKVLEWRPN---GGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-------~~~~~v~~l~~spd---~~~l~~~~ 163 (445)
..+.|+|.|+|+++++-...+.|.+++.. +++....... ........|+|+|+ ++.|+++.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~--~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPE--SGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTT--TCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECC--CCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 35799999999988764433467777643 2433221111 12456779999995 46665554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.025 Score=51.18 Aligned_cols=60 Identities=7% Similarity=-0.053 Sum_probs=37.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE------EecCCCCCeeEEEECcC---CCcEEEEe
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI------LTSDSQRDVKVLEWRPN---GGRSLSVG 163 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~------~~~~~~~~v~~l~~spd---~~~l~~~~ 163 (445)
.-+.|+|.|+|++|.++...|.|++++.+ +..... ...........|+|+|+ ++.++++.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~---g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG---KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT---TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC---CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 35789999999933445678988888742 321110 11112346789999995 45665553
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.059 Score=52.42 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=23.3
Q ss_pred EEEEcCCCCEEEEEecC----------------CeEEEEeCCCCCcc
Q 013338 259 ILKWSPTGDYFFAAKFD----------------GTFYLWETNTWTSE 289 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~d----------------g~v~iwd~~~~~~~ 289 (445)
.+++.+....++.+..+ +.|..+|.++++..
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~ 291 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK 291 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee
Confidence 35666777777777665 38999999999873
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0065 Score=56.99 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
......+.++|||+++++++..+..+.++++.........++.......+.+.....+....+|+++|.-..+..-|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid--- 398 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID--- 398 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT---
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeec---
Confidence 34556789999999999998888888888875321111111111111112223322267889999999444444455
Q ss_pred ccceEEEEEEccC
Q 013338 375 IYKGLIAIYDARR 387 (445)
Q Consensus 375 ~~d~~i~vwd~~~ 387 (445)
..|.-|++..
T Consensus 399 ---SqvvkWni~~ 408 (638)
T 3sbq_A 399 ---SQVVKWNMEE 408 (638)
T ss_dssp ---TEEEEEEHHH
T ss_pred ---ceEEEEeccH
Confidence 8899999974
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.004 Score=60.60 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=49.7
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe--eEEEECCCCCeEEE
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILL 312 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~ 312 (445)
|.|..||+.+++..........+..-.....+..+++++.|+.++.||.++++..........+ .-+.|..+|+..++
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 6899999999987544433323322222235677888999999999999999874222112222 23566678875443
Q ss_pred E
Q 013338 313 A 313 (445)
Q Consensus 313 ~ 313 (445)
.
T Consensus 546 ~ 546 (582)
T 1flg_A 546 V 546 (582)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.058 Score=48.30 Aligned_cols=241 Identities=12% Similarity=0.085 Sum_probs=118.8
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeE--E---ecCCCCCeeEEEECcC---CCcEEEE-e--cCCcEE
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACI--L---TSDSQRDVKVLEWRPN---GGRSLSV-G--CKGGIC 169 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~--~---~~~~~~~v~~l~~spd---~~~l~~~-~--~dg~i~ 169 (445)
.-+.|+|.|||+++++--..|.|++++.+ +++.... + ..........|+|+|+ ++.|++. + .++.|.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~--~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAK--TGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTT--TCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECC--CCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35799999999987765448988888643 2332211 1 1123456889999995 3445443 2 234454
Q ss_pred EEccCCCCCc-cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec------------CCe
Q 013338 170 IWAPSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------SSS 236 (445)
Q Consensus 170 vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------~g~ 236 (445)
-|........ ..+.. .-.++..+..........+.|.|||.+.++.+.. .|.
T Consensus 111 R~~~~~~~~~~~~~~~---------------~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 111 RMLYDEKKPSGEQLGA---------------PDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEBCTTSCTTCCBCC---------------CEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEeCCCCcccccCCC---------------cEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence 4544421100 00000 0012222221111245679999999877765421 245
Q ss_pred EEEEEccCC--------CceeeecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCcc--c---------------
Q 013338 237 FTIWDVAQG--------LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSE--P--------------- 290 (445)
Q Consensus 237 v~vwd~~~~--------~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~--~--------------- 290 (445)
|.-.+.... ....+.........++|+|+|..+++=. .++.=.|--+..+... .
T Consensus 176 IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 176 ILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp EEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred EEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 555555432 1111222334577899999877555432 2322222222222220 0
Q ss_pred --ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEE
Q 013338 291 --WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV 367 (445)
Q Consensus 291 --~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~ 367 (445)
+..+......++|. +|..+. +.-....+..+.+..... ..+....+.+.. .+.+++..|||.++++
T Consensus 256 ~~~~~~~~ap~G~~~~-~g~~~~-~~l~~~~l~~v~~~~~~~---------~~~~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 256 AQWSTDEASPSGIAYA-EGSVWM-AGLRGERLWRIPLKGTAA---------AADPQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp EEECTTTCCEEEEEEE-TTEEEE-EESTTCSEEEEEEETTEE---------SSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred EecCCCCCCCcceEEE-cCceee-ccccCCEEEEEEecCCce---------ecceEEeecCCCCCccEEEECCCCcEEEE
Confidence 00111244566665 344443 333344565565532110 001111222322 7899999999987666
Q ss_pred EE
Q 013338 368 SY 369 (445)
Q Consensus 368 ~s 369 (445)
..
T Consensus 325 td 326 (347)
T 3das_A 325 TS 326 (347)
T ss_dssp EC
T ss_pred Ec
Confidence 43
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.13 Score=50.33 Aligned_cols=227 Identities=10% Similarity=0.027 Sum_probs=135.1
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+.+. .+.|+..+++....... .+....-..+.+|+|.+.++.++.+.. .+.|..++++.... ..+
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~-~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v--------- 386 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFV--------- 386 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCE-ECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE---------
T ss_pred EEEEEc-ccceEEEecCCCcccee-EEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEE---------
Confidence 444443 45566667754322221 221223345788999987677777654 47888887762211 111
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec-CCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~ 270 (445)
+... -.....+++.+.+..|+.+....+.|.+.++.......+.. .-.....++++|...+|.
T Consensus 387 ---------------~~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly 450 (619)
T 3s94_A 387 ---------------VTAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY 450 (619)
T ss_dssp ---------------ECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred ---------------EECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence 1111 14567899988667777766555799999998765544443 346789999999755555
Q ss_pred EEec--CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~~--dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
.+.. ...|...+++......+. ..-...+.+++++++..|+.+-.....+..+.+... ..+.+
T Consensus 451 ~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~--------------~~~~~ 516 (619)
T 3s94_A 451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT--------------GRRVL 516 (619)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC--------------CCEEE
T ss_pred EecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC--------------ceEEE
Confidence 4432 367888888765443332 234567899999988888888766667777765321 11111
Q ss_pred c-CC-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC
Q 013338 348 T-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT 388 (445)
Q Consensus 348 ~-~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~ 388 (445)
. .. ....+++... .+|+.+.... +.|...|..++
T Consensus 517 ~~~~l~~P~glav~~--~~ly~tD~~~-----~~I~~~~k~~g 552 (619)
T 3s94_A 517 VEDKIPHIFGFTLLG--DYVYWTDWQR-----RSIERVHKRSA 552 (619)
T ss_dssp EECCCCSSCCEEEET--TEEEEECTTS-----SCEEEEESSSC
T ss_pred eccCCCCcEEEEEEC--CEEEEeecCC-----CeEEEEEcCCC
Confidence 1 11 1345666543 3566553332 56777777665
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.15 Score=47.66 Aligned_cols=109 Identities=11% Similarity=0.174 Sum_probs=59.6
Q ss_pred CCeeEEEECcCCCcEEEEecCC-cEEEEccCCCCCccccccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP 222 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp 222 (445)
...+.|+|.|+| .++++...+ .|.+++... +....+.... ..+. ......+..++|+|
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~------------------~~~~~~~g~~Gllgia~~P 86 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPES-GSVKTVFQVP------------------EIVNDADGQNGLLGFAFHP 86 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTT-CCEEEEEECT------------------TCCCCTTSSCSEEEEEECT
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCC-CcEeEEecCC------------------ccccccCCCCceeEEEECC
Confidence 456799999996 566666664 687776532 1111111000 0000 01135778999999
Q ss_pred C---CCeEEEEEec------------CCeEEEEEccCCC-----ceeee---c--CCCCeeEEEEcCCCCEEEEEe
Q 013338 223 D---GRYLASASYE------------SSSFTIWDVAQGL-----GTPIR---R--GFGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 223 ~---~~~l~~~~~d------------~g~v~vwd~~~~~-----~~~~~---~--~~~~v~~~~~sp~g~~l~~~~ 273 (445)
+ +..|+++... ...|..|++..+. ...+. . .......|+|.|||++.++.+
T Consensus 87 df~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 87 DFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 5 5555554321 1256666654321 11111 1 124578899999998777654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.11 Score=45.57 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=76.0
Q ss_pred CCCeEEEEEec-C----CeEEEEEccCCCceeeecCC-CCe-eEEEEcCCCCEEEEEec---------CCeEEEEeCCCC
Q 013338 223 DGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGF-GGL-SILKWSPTGDYFFAAKF---------DGTFYLWETNTW 286 (445)
Q Consensus 223 ~~~~l~~~~~d-~----g~v~vwd~~~~~~~~~~~~~-~~v-~~~~~sp~g~~l~~~~~---------dg~v~iwd~~~~ 286 (445)
+++.++.|+.+ . ..+.+||+.+.+...+.... ... .+++. -+++.++.|+. -..+.+||+.+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 67777777765 1 25889999887655443221 111 11222 26666666654 345899999887
Q ss_pred CcccccCCCCC--eeEEEECCCCCeEEEEEcCC-ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCC
Q 013338 287 TSEPWSSTSGF--VTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g 362 (445)
+-..+...... -.++... +++.+++++... .....+..++.... .+..+..+.... ....+.+ ++
T Consensus 180 ~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~~~~~~--~~ 248 (306)
T 3ii7_A 180 TWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLN--------EWKMVSPMPWKGVTVKCAAV--GS 248 (306)
T ss_dssp EEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTT--------EEEECCCCSCCBSCCEEEEE--TT
T ss_pred eEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCC--------cEEECCCCCCCccceeEEEE--CC
Confidence 65433321111 1122222 555555543211 11112222221110 111122222111 2223333 67
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
+.++.|+.++.. .-..+.+||..+.+-.
T Consensus 249 ~i~v~GG~~~~~-~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 249 IVYVLAGFQGVG-RLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEEEECBCSSS-BCCEEEEEETTTTEEE
T ss_pred EEEEEeCcCCCe-eeeeEEEEcCCCCeEE
Confidence 778887755332 2257899999886554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.15 Score=44.56 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=74.8
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWS 292 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~ 292 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... ......+..-+++.++.|+.+ ..+.+||+.+.+...+.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 567777776541 26889999887665443321 111111112267777777654 46899999887654332
Q ss_pred CCC---CCeeEEEECCCCCeEEEEEcCC----ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCE
Q 013338 293 STS---GFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER 364 (445)
Q Consensus 293 ~~~---~~v~~~~~sp~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~ 364 (445)
... .....+.+ +++.++.++... ..+..+++... ....+..+.... ....+.+ +++.
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~~--~~~i 256 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-----------SWTTVTSMTTPRCYVGATVL--RGRL 256 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-----------cEEECCCCCCcccceeEEEE--CCEE
Confidence 111 11122222 455555554321 12223332111 111111121111 1222222 6777
Q ss_pred EEEEEcCCCcccceEEEEEEccCCCee
Q 013338 365 LAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 365 l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++.|+.++.. .-..+.+||.++.+..
T Consensus 257 ~v~GG~~~~~-~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 257 YAIAGYDGNS-LLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEECCBCSSS-BEEEEEEEETTTTEEE
T ss_pred EEEcCcCCCc-ccccEEEEcCCCCeEE
Confidence 7777654322 1256889998876544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.24 Score=45.31 Aligned_cols=261 Identities=11% Similarity=0.138 Sum_probs=147.9
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
+..+.|.|+..+.. ..... -..-+.-.+|. ..+++.-...++.|||++.+.....
T Consensus 47 ~~~vvIiDl~~~~~--~~rrp----i~AdsAIMnP~-~~iiALrag~~lQiFnle~K~klks------------------ 101 (494)
T 1bpo_A 47 QAQVVIIDMNDPSN--PIRRP----ISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------ 101 (494)
T ss_dssp CCEEEEEETTSTTS--CEEEE----CCCSEEEECSS-SSCEEEEETTEEEEEETTTTEEEEE------------------
T ss_pred CCeEEEEECCCCCc--ceecc----cccceeeeCCC-CcEEEEecCCeEEEEchHHhhhhcc------------------
Confidence 34788888865332 22111 11235667888 5666666688999999984433222
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCC-Cceeeec-C----CCCeeEEEEcCCCCEEEEEe
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR-G----FGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~-~~~~~~~-~----~~~v~~~~~sp~g~~l~~~~ 273 (445)
..- ...|.--.|-.+ +.|+..+.. .|+-|++... ....++. | ...|.....+++.++++..+
T Consensus 102 -------~~~--~e~VvfWkWis~-~~l~lVT~t--aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 102 -------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp -------EEC--SSCCCEEEEEET-TEEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred -------eec--CCCceEEEecCC-CeEEEEcCC--eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence 111 145666666443 455555543 8999999753 2333333 2 35678888899999987443
Q ss_pred c-------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCC---CeEEEEEcC--CceEEEEEeccCCCCccccccCccc
Q 013338 274 F-------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG---RMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 274 ~-------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
- .|.+.+|..+.+..+.+.+|......+.+.-+. ..++.+... .+++.++.+...+... ... ..
T Consensus 170 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~--~~f--~k 245 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPF--PK 245 (494)
T ss_dssp EEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC--CCC--CC
T ss_pred ecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC--CCc--cc
Confidence 2 468999999998888888887666555443221 233333221 2566777764321100 000 01
Q ss_pred cccccc-cC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 342 PDIVSL-TG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 342 ~~~~~~-~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+.+..+ .. .. -..++..|+.-..++....- |.|++||+.++.++....+ ..+.|-.. +++.
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~------G~i~lyDleTgt~i~~nrI-----s~~~iF~t--~~~~-- 310 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMNRI-----SGETIFVT--APHE-- 310 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEEEE--EEET--
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecC------ceEEEEecccceeeeeecc-----cCCceEEe--cccC--
Confidence 111101 11 11 34567788877788888777 9999999999988743222 22333211 2221
Q ss_pred CCCCeEEEEecCeeeEeeee
Q 013338 418 KQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 418 ~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.+++|. ..|.|....+
T Consensus 311 ~~~Gi~~Vn-r~GqVl~v~v 329 (494)
T 1bpo_A 311 ATAGIIGVN-RKGQVLSVCV 329 (494)
T ss_dssp TTTEEEEEE-TTCEEEEEEE
T ss_pred CCCcEEEEc-cCceEEEEEE
Confidence 235566666 5666654443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.039 Score=50.25 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=90.1
Q ss_pred cCCCCEEEEEecCCeEEEEeCCCCCc-ccccC----CCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc-cc
Q 013338 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA-HL 336 (445)
Q Consensus 263 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~----~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 336 (445)
..+|..++++- ++.||.-++..... +.+.. .-..+..+..+|+|++||..+. ..+.++.+-........ ..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccccCccccc
Confidence 34566666554 56788777764332 22222 1236788999999999998754 45666666422111100 00
Q ss_pred -cCcc--cccccccc--CCCccceEEeCCC---CCEEEEEEcCCCcccceEEEEEEccCCCeeeeee---eeee--eCCC
Q 013338 337 -LPVD--LPDIVSLT--GSQGIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL---IGFI--RGPG 403 (445)
Q Consensus 337 -~~~~--~~~~~~~~--~~~~v~~~~~sp~---g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~---~~~~--~~~~ 403 (445)
.... .-.+.... ....|..+.|+|- +..|++-..| +.|++||+.........+ ...+ ....
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD------~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~ 179 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED------DTITMFDILNSQEKPIVLNKPNNSFGLDARV 179 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT------SCEEEEETTCTTSCCEEESCCCSEEESCSSC
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC------CEEEEEEcccCCCCCcchhccccccCCCccc
Confidence 0000 00011111 1227999999995 4678888887 899999998522111100 0111 1122
Q ss_pred CCCCceeEeecCCCCCCCeEEEE--ecCeeeE-eeeeeee
Q 013338 404 DNPKPVAFSFHDKFKQGPLLSVC--WSSGFCC-TYPLIFR 440 (445)
Q Consensus 404 ~~v~~v~~spdg~~~~~~~l~~~--~~~G~v~-~~~~~~~ 440 (445)
..|.+++|+++| + .|=+. .+.|.|+ +||++-.
T Consensus 180 ~ev~S~~Fg~~~-l----TLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 180 NDITDLEFSKDG-L----TLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp CCEEEEEECTTS-S----CEEEEECTTSCEEEEESSCCCS
T ss_pred ceEEEEEEcCCC-c----EEEEEecCCCCCEEEECCCCcc
Confidence 557788888843 2 34443 3778885 6776643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.091 Score=43.22 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=81.1
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcce------eEEec-CCCCCeeEEEECcCCCcEEEEecCCcEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDA------CILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~------~~~~~-~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~ 173 (445)
.+..++|+|+|.+.+. .+|. ||..+..+.... ..+-. +-. .-.++.|.|+| .|+++ .||.|.-++-
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G-~LYav-~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNG-YLYAV-SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTS-CEEEE-ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--eCCe--EEEECCCCCCcccccccccEecccccc-cceEEEECCCC-CEEEe-CCCEEEEeCC
Confidence 5679999999997776 5665 455543331111 11100 111 14789999995 55555 6788877765
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc------
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------ 247 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~------ 247 (445)
.+.+....+... ..+-...-..+..+.+.|+|.+.++. + |.++-....++..
T Consensus 115 P~~~~~~Wl~~a-------------------~~vg~~gw~~~~~lff~p~G~Lyav~--d-g~lyr~~~P~~~~~~wl~~ 172 (236)
T 1tl2_A 115 PQSDTDNWIARA-------------------TEVGSGGWSGFKFLFFHPNGYLYAVH--G-QQFYKALPPVSNQDNWLAR 172 (236)
T ss_dssp CCSTTCCHHHHS-------------------EEEECSSGGGEEEEEECTTSCEEEEE--T-TEEEEECCCSSTTCCHHHH
T ss_pred CcCCCCceeccc-------------------cEeccCCCCceEEEEECCCceEEEEe--C-CcEEecCCCCCCCcccccc
Confidence 433333222221 00111111467999999999877665 6 5754433222211
Q ss_pred -eeee-cCCCCeeEEEEcCCCCEEEEEecCCeEE
Q 013338 248 -TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFY 279 (445)
Q Consensus 248 -~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~ 279 (445)
..+- ..-.....+.|.+++...++. ++.++
T Consensus 173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 1111 122344557788888877666 77544
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.38 Score=43.28 Aligned_cols=34 Identities=3% Similarity=-0.100 Sum_probs=22.1
Q ss_pred CCCCEEEEEEcCCCcccceEEEEEEccCCCeeee
Q 013338 360 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL 393 (445)
Q Consensus 360 p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~ 393 (445)
-+++.++.|+.+.+...-..+.++++++++.+..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 4778888888764322124677789998887754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.31 Score=42.58 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=39.8
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC--CeeEEEEcCCCCEEEEEecC-------CeEEEEeCCCCCcc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-------GTFYLWETNTWTSE 289 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d-------g~v~iwd~~~~~~~ 289 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... .-.+++. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 667777777652 157889988876654432211 1112222 266666766542 35899999887654
Q ss_pred c
Q 013338 290 P 290 (445)
Q Consensus 290 ~ 290 (445)
.
T Consensus 187 ~ 187 (302)
T 2xn4_A 187 Y 187 (302)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.59 Score=42.66 Aligned_cols=157 Identities=12% Similarity=0.122 Sum_probs=93.1
Q ss_pred EccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCC---CCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccc
Q 013338 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDS---QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 107 ~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 183 (445)
.+.+|..++++ .++.||.-++.... .-+.+...+ -..|..+..+|+| .+++...+..|.|-.+..+.....-.
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFNDNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECTTS-SEEEEECSSEEEEEECCTTCSCCCCH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCC--cceEEecCcccccCceeEEEECCCC-CEEEEecCCeEEEEEecCccccCccc
Confidence 34566666654 45788887875322 233333332 2368889999995 56666667789988887322111100
Q ss_pred cccccccccccCCCCCceEEEEeec-----ccCCCceeEEEECCC---CCeEEEEEecCCeEEEEEccCCCceee-e---
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLR-----SQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTPI-R--- 251 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~---~~~l~~~~~d~g~v~vwd~~~~~~~~~-~--- 251 (445)
.. . ....+ +.+. .....+|..+.|+|- +..|++-..| +.|++||+......+. .
T Consensus 104 ~~-~-----------~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD-~~Ir~yDl~~s~~~P~~L~k~ 169 (452)
T 3pbp_A 104 SI-Q-----------DAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED-DTITMFDILNSQEKPIVLNKP 169 (452)
T ss_dssp HH-H-----------HTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT-SCEEEEETTCTTSCCEEESCC
T ss_pred cc-c-----------cccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC-CEEEEEEcccCCCCCcchhcc
Confidence 00 0 00011 1111 111368999999994 4568888888 5999999986322111 1
Q ss_pred ----c---CCCCeeEEEEcCCCCEEEEEe--cCCeEEEE
Q 013338 252 ----R---GFGGLSILKWSPTGDYFFAAK--FDGTFYLW 281 (445)
Q Consensus 252 ----~---~~~~v~~~~~sp~g~~l~~~~--~dg~v~iw 281 (445)
+ ....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1 125688999999887777755 77887655
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.48 Score=41.56 Aligned_cols=152 Identities=8% Similarity=0.037 Sum_probs=74.9
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~ 290 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... .....+.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 667777776542 26889999887655443221 11122222 66777777654 468999998876543
Q ss_pred ccCC---CCCeeEEEECCCCCeEEEEEcCC----ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCC
Q 013338 291 WSST---SGFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE 363 (445)
Q Consensus 291 ~~~~---~~~v~~~~~sp~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 363 (445)
+... ......+.+ +++.+++++... ..+..+++... ....+..+.....-.+++. -+++
T Consensus 199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~-~~~~ 264 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-----------TWTFVAPMKHRRSALGITV-HQGR 264 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEECCCCSSCCBSCEEEE-ETTE
T ss_pred CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-----------cEEECCCCCCCccceEEEE-ECCE
Confidence 3221 111222223 555555553321 12233332111 1111111211111112222 2677
Q ss_pred EEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 364 RLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 364 ~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.++.|+.++.. .-..+.+||+.+.+..
T Consensus 265 i~v~GG~~~~~-~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 265 IYVLGGYDGHT-FLDSVECYDPDTDTWS 291 (308)
T ss_dssp EEEECCBCSSC-BCCEEEEEETTTTEEE
T ss_pred EEEEcCcCCCc-ccceEEEEcCCCCEEe
Confidence 77777654322 2257889999876544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.9 Score=48.15 Aligned_cols=226 Identities=11% Similarity=0.125 Sum_probs=129.0
Q ss_pred CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCC
Q 013338 120 STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT 199 (445)
Q Consensus 120 d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (445)
..+|.|.|+..+.. ... ..-..-+.-++|. ..+++.-...++.|||++++.......-
T Consensus 47 ~~~vvIidl~~~~~--~~r----rpi~AdsAIMnP~-~~iiALrag~~lQiFnl~~k~klks~~~--------------- 104 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSN--PIR----RPISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKAHTM--------------- 104 (1630)
T ss_pred CceEEEEECCCCCC--ccc----ccccchhhccCCC-cceEEEecCCeEEEeehHHhhhhccccc---------------
Confidence 34677888754322 111 1112234556887 5777776788999999985544332111
Q ss_pred ceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeec-C----CCCeeEEEEcCCCCEEEEEe
Q 013338 200 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRR-G----FGGLSILKWSPTGDYFFAAK 273 (445)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~-~----~~~v~~~~~sp~g~~l~~~~ 273 (445)
...|.--.|-.+ +.|+..+.. .|.-|++.... +..++. | ...|..-..+++.++++..+
T Consensus 105 ------------~e~VvfWkWis~-~~l~lVT~~--aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 105 ------------TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred ------------CCCceEEEecCC-CeeEEEcCC--eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe
Confidence 145666666443 445555433 79999996432 222222 2 35677788899999987443
Q ss_pred -------cCCeEEEEeCCCCCcccccCCCCCeeEEEEC--CC-CCeEEEEEc--CCceEEEEEeccCCCCccccccCccc
Q 013338 274 -------FDGTFYLWETNTWTSEPWSSTSGFVTGATWD--PE-GRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 274 -------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~s--p~-~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
..|.+.+|..+.+..+.+.+|.+....+... +. ...++.+.. ..+++.++.+...+... ... ..
T Consensus 170 i~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~--~~f--~k 245 (1630)
T 1xi4_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN--QPF--PK 245 (1630)
T ss_pred eccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC--CCC--cc
Confidence 3578999999988777777776665444442 11 223332221 12466666664321110 000 01
Q ss_pred ccccc-ccC--CC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeee
Q 013338 342 PDIVS-LTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 342 ~~~~~-~~~--~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
+.+.. +.. .. -..++..|+.-..+...+.- |.|.+||+.++..+.
T Consensus 246 k~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~------G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIY 294 (1630)
T ss_pred ccccccCCcccccCcceEEEeccccCEEEEEecC------ceEEEEecccchhhh
Confidence 11111 111 11 34567777777777777777 899999999987763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.97 Score=39.71 Aligned_cols=69 Identities=6% Similarity=-0.122 Sum_probs=40.7
Q ss_pred CCCeEEEEEecC-------CeEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEec-C-----CeEEEEeCCCCCc
Q 013338 223 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF-D-----GTFYLWETNTWTS 288 (445)
Q Consensus 223 ~~~~l~~~~~d~-------g~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~-d-----g~v~iwd~~~~~~ 288 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... ......+..-+++.++.|+. + ..+.+||..+.+-
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 567777777430 25899999887654443221 11111122236677777776 2 4699999988765
Q ss_pred ccc
Q 013338 289 EPW 291 (445)
Q Consensus 289 ~~~ 291 (445)
..+
T Consensus 178 ~~~ 180 (315)
T 4asc_A 178 KEL 180 (315)
T ss_dssp EEC
T ss_pred EEC
Confidence 433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.72 Score=37.98 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
..+..++|+|+| .|+++ .+|.+.-.+..+.+....+.+. ..+.. .+- ....++.|.|+|
T Consensus 41 ~~~~~laf~P~G-~LYaV-~~G~Ly~~~~~t~~~~~W~~s~----------------t~IG~-~Gw--~~F~a~~fD~~G 99 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV-LNDKIYKGTPPTHDNDNWMGRA----------------KKIGN-GGW--NQFQFLFFDPNG 99 (236)
T ss_dssp TTCSEEEECTTS-CEEEE-ETTEEEEESCCCSTTCCHHHHC----------------EEEEC-SCG--GGCSEEEECTTS
T ss_pred ccceeEEECCCc-cEEEE-eCCeEEEECCCCCCcccccccc----------------cEecc-ccc--ccceEEEECCCC
Confidence 478899999984 56666 6676554443322222111111 00000 011 125789999999
Q ss_pred CeEEEEEecCCeEEEEEccCCCcee-------eec-CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc------
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTP-------IRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------ 290 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~-------~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------ 290 (445)
.+.++ .| |.|.-++..+..... +-. .=..+..|.+.|+|.+.++. |+.++-....+.....
T Consensus 100 ~LYav--~d-G~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~ 174 (236)
T 1tl2_A 100 YLYAV--SK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT 174 (236)
T ss_dssp CEEEE--ET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred CEEEe--CC-CEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence 87776 56 788888764332211 111 12567899999999977766 7776443333222111
Q ss_pred cc--CCCCCeeEEEECCCCCeEEEE
Q 013338 291 WS--STSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 291 ~~--~~~~~v~~~~~sp~~~~l~~~ 313 (445)
.. ..-...+.+.|.+++.+.++.
T Consensus 175 ~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 175 KIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEESSSGGGEEEEEECTTSCEEEEE
T ss_pred eeccCCcceEEEEEECCCCcEEEEe
Confidence 11 112234557799999888765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=1.7 Score=37.80 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=41.7
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC---CeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~ 290 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... ....+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 677777776541 268999998876655432211 1122222 66777777764 469999998876543
Q ss_pred c
Q 013338 291 W 291 (445)
Q Consensus 291 ~ 291 (445)
+
T Consensus 237 ~ 237 (301)
T 2vpj_A 237 V 237 (301)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.71 E-value=2 Score=37.63 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=40.1
Q ss_pred CCCeEEEEEecC------CeEEEEEccCCCceeeecCCCCe-eEEEEcCCCCEEEEEec------CCeEEEEeCCCCCcc
Q 013338 223 DGRYLASASYES------SSFTIWDVAQGLGTPIRRGFGGL-SILKWSPTGDYFFAAKF------DGTFYLWETNTWTSE 289 (445)
Q Consensus 223 ~~~~l~~~~~d~------g~v~vwd~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~ 289 (445)
+++.++.|+.+. ..+.+||+.+.+...+....... ...+...+++.++.|+. -..+.+||+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 667777777641 15788998887665443222111 11111236777777764 236999999987654
Q ss_pred c
Q 013338 290 P 290 (445)
Q Consensus 290 ~ 290 (445)
.
T Consensus 189 ~ 189 (318)
T 2woz_A 189 D 189 (318)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=2.1 Score=37.31 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=40.8
Q ss_pred CCCeEEEEEecC--------CeEEEEEccCCCceeeecCCC-C-eeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCC
Q 013338 223 DGRYLASASYES--------SSFTIWDVAQGLGTPIRRGFG-G-LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWT 287 (445)
Q Consensus 223 ~~~~l~~~~~d~--------g~v~vwd~~~~~~~~~~~~~~-~-v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~ 287 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... . -.+++.. +++.++.|+.+ ..+.+||+.+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 667777776431 258899998886655433211 1 1122222 66777777653 368999998876
Q ss_pred cccc
Q 013338 288 SEPW 291 (445)
Q Consensus 288 ~~~~ 291 (445)
-..+
T Consensus 228 W~~~ 231 (306)
T 3ii7_A 228 WKMV 231 (306)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.95 Score=39.41 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=41.5
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCCC-CeeEEEEcCCCCEEEEEecCC-----eEEEEeCCCCCcccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG-GLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTSEPW 291 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~~~~~~ 291 (445)
+++.++.|+.+. ..+.+||+.+.+...+..... .....+..-+++.++.|+.++ .+.+||+.+.+-..+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 567777777541 268999998876655433211 111111122677777777653 588999988765443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.27 E-value=3.8 Score=38.88 Aligned_cols=131 Identities=13% Similarity=-0.030 Sum_probs=77.4
Q ss_pred CCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC------c-------ccccCCCCCeeEEEECCCCCeEEEEEcCCceE
Q 013338 255 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT------S-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL 320 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~------~-------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~ 320 (445)
.....+..+|||+++++++. +.++.++|.+... . .............+|.++| ..+++.--++.+
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceE
Confidence 45667899999999887665 7799999998521 1 0011234456778999999 666776677778
Q ss_pred EEEEeccCCCCccccccCccccccccccCCCccceE------EeCCCCCEEEEEEcCCCccc-------ceEEEEEEccC
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI------AWDASGERLAVSYKGGDDIY-------KGLIAIYDARR 387 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~sp~g~~l~~~s~d~~d~~-------d~~i~vwd~~~ 387 (445)
-.|++...-....... ....+..+.-|..+-.+ .-.|||++|++...-+-|++ -..-.|.|+..
T Consensus 402 vkWni~~a~~~~~g~~---~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEK---VNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEHHHHHHHHTTCC---CCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred EEEeccHHHHHhcCcc---CCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 8887743200000000 01223333333322222 23689999999876555432 13557888865
Q ss_pred CC
Q 013338 388 TP 389 (445)
Q Consensus 388 ~~ 389 (445)
.+
T Consensus 479 dk 480 (638)
T 3sbq_A 479 DE 480 (638)
T ss_dssp SS
T ss_pred Cc
Confidence 43
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.88 Score=45.20 Aligned_cols=154 Identities=9% Similarity=0.007 Sum_probs=79.2
Q ss_pred CCCEEEEEECCC------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCccc
Q 013338 110 HKHIVAFISGST------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAAS 181 (445)
Q Consensus 110 ~g~~la~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~~~ 181 (445)
++++++.|+.++ .+.+||... .+............-.+++.-.++..++.+|.+ +.+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t--~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t------ 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKT--REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE------ 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTT--TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT------
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCC--CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC------
Confidence 777777777432 466677643 322221111111222233332354556666654 3678888762
Q ss_pred cccccccccccccCCCCCceEEEEe---ecccCCCceeEEEECCC-CCeEEEEEecC------CeEEEEEccCCC-----
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPD-GRYLASASYES------SSFTIWDVAQGL----- 246 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~-~~~l~~~~~d~------g~v~vwd~~~~~----- 246 (445)
+.|..+.. +.... ....++.+..+ ++.++.|+.+. ..+.+||+.+..
T Consensus 523 -----------------~~W~~~~~~g~~p~~r-~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~ 584 (695)
T 2zwa_A 523 -----------------EIFKDVTPKDEFFQNS-LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPI 584 (695)
T ss_dssp -----------------TEEEECCCSSGGGGSC-CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCE
T ss_pred -----------------CceEEccCCCCCCCcc-cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccce
Confidence 23433332 11111 22234555554 67777776521 268999999887
Q ss_pred -ceeeecC--CCC-eeEEEEcCCCCEEEEEecC--------CeEEEEeCCCCCcc
Q 013338 247 -GTPIRRG--FGG-LSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSE 289 (445)
Q Consensus 247 -~~~~~~~--~~~-v~~~~~sp~g~~l~~~~~d--------g~v~iwd~~~~~~~ 289 (445)
...+... ... -.+++...+++.++.|+.+ ..|.+||+.+.+..
T Consensus 585 ~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 585 TVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 3333221 111 1122333337777777743 46999999887653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.44 E-value=3.7 Score=35.90 Aligned_cols=160 Identities=5% Similarity=-0.015 Sum_probs=75.6
Q ss_pred EECCCCCeEEEEEe----cC------CeEEEEEccCCCceeeecCCCCe--eEEEEcCCCCEEEEEecC--------CeE
Q 013338 219 SWGPDGRYLASASY----ES------SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFD--------GTF 278 (445)
Q Consensus 219 ~~sp~~~~l~~~~~----d~------g~v~vwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~d--------g~v 278 (445)
....+++.++.|+. +. ..+.+||..+++...+......- .+++. -+++.++.|+.+ ..+
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCE
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceE
Confidence 33457788888874 10 13778898887654443221111 11222 256666777632 369
Q ss_pred EEEeCCCCCcccccCCCCC--eeEEEECCCCCeEEEEEcCC--ceEEEEEeccCCCCccccccCccccccccccCCC-cc
Q 013338 279 YLWETNTWTSEPWSSTSGF--VTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GI 353 (445)
Q Consensus 279 ~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 353 (445)
.+||..+.+-..+...... -.+++. -+++.++.++... .....+..++.... ....+..+.... ..
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--------~W~~~~~~p~~r~~~ 190 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--------EWKELAPMQTARSLF 190 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT--------EEEECCCCSSCCBSC
T ss_pred EEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC--------eEEECCCCCCchhce
Confidence 9999988765433321111 112222 3555555554311 11112222221100 111111121111 11
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
..+.+ +++.++.|+.++.. .-..+.+||+.+.+..
T Consensus 191 ~~~~~--~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 191 GATVH--DGRIIVAAGVTDTG-LTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEEEE--TTEEEEEEEECSSS-EEEEEEEEETTTTEEE
T ss_pred EEEEE--CCEEEEEeccCCCC-ccceEEEEECCCCeEE
Confidence 22222 67788888765431 1247889999876544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=5.6 Score=39.41 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=43.3
Q ss_pred CCCCeEEEEEecCC-eEEEEEccCCCceeeec------CCCCeeEEEEcCC-CCEEEEEec--C-----CeEEEEeCCCC
Q 013338 222 PDGRYLASASYESS-SFTIWDVAQGLGTPIRR------GFGGLSILKWSPT-GDYFFAAKF--D-----GTFYLWETNTW 286 (445)
Q Consensus 222 p~~~~l~~~~~d~g-~v~vwd~~~~~~~~~~~------~~~~v~~~~~sp~-g~~l~~~~~--d-----g~v~iwd~~~~ 286 (445)
.+++.++.|+.+.. .+.+||..+.....+.. .......+.+..+ ++.++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 47888888876522 68999998876654432 1122233555555 667777765 2 46999999887
Q ss_pred C
Q 013338 287 T 287 (445)
Q Consensus 287 ~ 287 (445)
+
T Consensus 579 ~ 579 (695)
T 2zwa_A 579 N 579 (695)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=92.88 E-value=1.3 Score=38.74 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=41.4
Q ss_pred CCCeEEEEEecC----CeEEEEEccCCCceeeecCC---CCeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCccc
Q 013338 223 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~----g~v~vwd~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~ 290 (445)
+++.++.|+.+. ..+.+||+.+.+...+.... .....+.+ +++.++.|+.+ ..+.+||+.+.+...
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 667777776541 26899999887655443211 11222223 67777777664 469999998876544
Q ss_pred c
Q 013338 291 W 291 (445)
Q Consensus 291 ~ 291 (445)
+
T Consensus 246 ~ 246 (308)
T 1zgk_A 246 V 246 (308)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.70 E-value=6.4 Score=36.71 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=33.2
Q ss_pred eeEEEEccCCC-EEEEEECCCeEEEEEccCCC-CcceeEEe----cC----CCCCeeEEEECcC
Q 013338 102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSE-GKDACILT----SD----SQRDVKVLEWRPN 155 (445)
Q Consensus 102 v~~~~~sp~g~-~la~~~~d~~i~iw~~~~~~-~~~~~~~~----~~----~~~~v~~l~~spd 155 (445)
-+.|+|.|||. .|+++...|.|++++.+... ...+..+. .+ .......|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 56899999996 45556788999988643110 11111111 11 1456889999996
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.51 E-value=4.4 Score=36.11 Aligned_cols=54 Identities=9% Similarity=-0.149 Sum_probs=29.8
Q ss_pred eEEEEEccCCCceeeecCC-CCeeEEEEcCCCCEEEEEecCC------eEEEEeCCCCCcc
Q 013338 236 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDG------TFYLWETNTWTSE 289 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~dg------~v~iwd~~~~~~~ 289 (445)
.+.+||+.+.+...+.... ......+...+++.++.|+.++ .|.++++++++..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 4789999887765543321 1111222334677888888653 4777788887763
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.39 E-value=6.6 Score=34.24 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCCCeEEEEEecC-----CeEEEEEccCCCceeeecCCC--CeeEEEEcCCCCEEEEEecC-----CeEEEEeCCCCCcc
Q 013338 222 PDGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE 289 (445)
Q Consensus 222 p~~~~l~~~~~d~-----g~v~vwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~ 289 (445)
.+++.++.|+.+. ..+.+||+.+.+...+..... .-.+++. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 4677777776521 258999998876654432211 1112222 266777777653 35889999887764
Q ss_pred cc
Q 013338 290 PW 291 (445)
Q Consensus 290 ~~ 291 (445)
.+
T Consensus 236 ~~ 237 (318)
T 2woz_A 236 VM 237 (318)
T ss_dssp EC
T ss_pred EC
Confidence 44
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=91.09 E-value=17 Score=38.31 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=49.1
Q ss_pred ccceEEeCCC------CCEEEEEEc-CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEE
Q 013338 352 GIEKIAWDAS------GERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS 424 (445)
Q Consensus 352 ~v~~~~~sp~------g~~l~~~s~-d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~ 424 (445)
.|.++++.|. +++++.|.. | ++++|+++.+-+.+.... +.+ ...+.++.+..-+ ...+|-
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d------~tv~I~sL~~l~~~~~~~---L~~-~~~p~si~l~~~~---~~~~L~ 621 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTD------ISARILKLPSFELLHKEM---LGG-EIIPRSILMTTFE---SSHYLL 621 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTT------TEEEEEETTTCCEEEEEE---CCS-SCCEEEEEEEEET---TEEEEE
T ss_pred ceEEEEeecCCCCcccccEEEEEECCC------CEEEEEECCCCCeEEEEE---CCC-CCCCcEEEEEEeC---CCcEEE
Confidence 6899998863 478999886 6 899999998755443211 211 1233455444321 235788
Q ss_pred EEecCeeeEeeeeee
Q 013338 425 VCWSSGFCCTYPLIF 439 (445)
Q Consensus 425 ~~~~~G~v~~~~~~~ 439 (445)
+|..+|.+..|.+..
T Consensus 622 igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 622 CALGDGALFYFGLNI 636 (1158)
T ss_dssp EEETTSEEEEEEECT
T ss_pred EEeCCCeEEEEEEcC
Confidence 999999998887653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=90.58 E-value=10 Score=34.83 Aligned_cols=195 Identities=12% Similarity=0.186 Sum_probs=115.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
.-+.-.+|..+.||.-. ..++.|+|++. ...++... ....|..=.|-.+ ..++--.+..|.-|++.....+..
T Consensus 68 AdsAIMnP~~~iiALra-g~~lQiFnle~--K~klks~~--~~e~VvfWkWis~--~~l~lVT~taVyHWsi~~~s~P~k 140 (494)
T 1bpo_A 68 ADSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVK 140 (494)
T ss_dssp CSEEEECSSSSCEEEEE-TTEEEEEETTT--TEEEEEEE--CSSCCCEEEEEET--TEEEEECSSEEEEEESSSSCCCEE
T ss_pred cceeeeCCCCcEEEEec-CCeEEEEchHH--hhhhccee--cCCCceEEEecCC--CeEEEEcCCeeEEecccCCCCchh
Confidence 34677889988888765 78999999964 44444443 4556777788665 344445677899999974333332
Q ss_pred cccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe---c---CCeEEEEEccCCCceeeecCCC
Q 013338 182 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY---E---SSSFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d---~g~v~vwd~~~~~~~~~~~~~~ 255 (445)
+...+ ..+. ...|.....+++.+|++..+- + .|.+.+|..+.+..+.+.+|.+
T Consensus 141 vFdR~------------------~~L~---~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa 199 (494)
T 1bpo_A 141 MFDRH------------------SSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA 199 (494)
T ss_dssp EEECC------------------GGGT---TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEE
T ss_pred heecc------------------hhcc---cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeee
Confidence 22111 0011 246777788899998876542 1 1688999999887777777765
Q ss_pred CeeEEEEcCC---CCEEEEEecC---CeEEEEeCCCCC--cccc---------c--CCCCCeeEEEECCCCCeEEEEEcC
Q 013338 256 GLSILKWSPT---GDYFFAAKFD---GTFYLWETNTWT--SEPW---------S--STSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 256 ~v~~~~~sp~---g~~l~~~~~d---g~v~iwd~~~~~--~~~~---------~--~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
....+...-+ .+.++.+... +.++|.++.... ...+ . ....-..++..++.-..++.-. .
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT-K 278 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K 278 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE-T
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe-c
Confidence 5544444321 1234444442 789999986541 1111 1 1223345667776666555432 2
Q ss_pred CceEEEEEe
Q 013338 317 SLTLGSIHF 325 (445)
Q Consensus 317 ~~~~~~~~~ 325 (445)
-+.+..+++
T Consensus 279 ~G~i~lyDl 287 (494)
T 1bpo_A 279 YGYIHLYDL 287 (494)
T ss_dssp TSEEEEEET
T ss_pred CceEEEEec
Confidence 244444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=89.47 E-value=26 Score=37.70 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=94.5
Q ss_pred eEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
-+.-.+|..+.||.-. ..++.|+++++ ...+.... ....|..=.|-.+ . .++--.+..|.-|++.....+..+
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnl~~--k~klks~~--~~e~VvfWkWis~-~-~l~lVT~~aVyHW~~~~~s~P~k~ 141 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL-N-TVALVTDNAVYHWSMEGESQPVKM 141 (1630)
T ss_pred hhhccCCCcceEEEec-CCeEEEeehHH--hhhhcccc--cCCCceEEEecCC-C-eeEEEcCCeEEEeccCCCCccHHH
Confidence 3556788888887654 78899999975 33333332 3556777777655 3 344445678999999743333332
Q ss_pred ccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEe------cCCeEEEEEccCCCceeeecCCCC
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESSSFTIWDVAQGLGTPIRRGFGG 256 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~g~v~vwd~~~~~~~~~~~~~~~ 256 (445)
...+ ..+. ...|..-..+++.+|++..|- -.|.+.+|....+..+.+.+|.+.
T Consensus 142 fdR~------------------~~L~---~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~ 200 (1630)
T 1xi4_A 142 FDRH------------------SSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAAS 200 (1630)
T ss_pred Hhcc------------------hhcc---cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhh
Confidence 2211 1111 245677777888888776542 117899999988877777776554
Q ss_pred eeEEEEc--CC-CCEEEEEec---CCeEEEEeCCCC
Q 013338 257 LSILKWS--PT-GDYFFAAKF---DGTFYLWETNTW 286 (445)
Q Consensus 257 v~~~~~s--p~-g~~l~~~~~---dg~v~iwd~~~~ 286 (445)
...+... +. ...++.+.. .+.++|.++...
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~ 236 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence 4444432 11 223333322 268999998654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=87.96 E-value=17 Score=33.82 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred CceeEEEECCCCC-eEEEEEecCCeEEEEEccCCC---c-eee---ec------CCCCeeEEEEcCC----CCEEEEEec
Q 013338 213 EQITALSWGPDGR-YLASASYESSSFTIWDVAQGL---G-TPI---RR------GFGGLSILKWSPT----GDYFFAAKF 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~-~l~~~~~d~g~v~vwd~~~~~---~-~~~---~~------~~~~v~~~~~sp~----g~~l~~~~~ 274 (445)
...+.|+|.|+|. .|+++... |.|++++..... . ..+ .. .......|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4568999999996 56666666 799999754321 1 111 11 1457889999996 433333222
Q ss_pred --C----------CeEEEEeCCCC---C-----cccc-----cCCCCCeeEEEECCCCCeEEEEEc
Q 013338 275 --D----------GTFYLWETNTW---T-----SEPW-----SSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 275 --d----------g~v~iwd~~~~---~-----~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+ ..|.-|.+... . .+.+ .........|.|.|||.+.++.++
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 14444655431 1 1111 112234678999999977665544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.92 E-value=3.5 Score=36.62 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=22.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCCccc
Q 013338 265 TGDYFFAAKFDGTFYLWETNTWTSEP 290 (445)
Q Consensus 265 ~g~~l~~~~~dg~v~iwd~~~~~~~~ 290 (445)
.+..+++++.++++...|+++|+...
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEE
Confidence 45678899999999999999999843
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=87.68 E-value=31 Score=36.45 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=41.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCC------CcEEEEec-CCcEEEEcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNG------GRSLSVGC-KGGICIWAP 173 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~------~~l~~~~~-dg~i~vw~~ 173 (445)
.|...+.+ +.+++.++ .+.+.++.++. +.........-...|.|+++.|.. ..++++.. |++++|+++
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~--~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHP--QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEET--TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeC--CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 34444433 34566554 57787887764 322222222345679999997632 34555554 899999999
Q ss_pred C
Q 013338 174 S 174 (445)
Q Consensus 174 ~ 174 (445)
.
T Consensus 590 ~ 590 (1158)
T 3ei3_A 590 P 590 (1158)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.55 E-value=23 Score=31.97 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=50.0
Q ss_pred CceeEEEECCC-CCeEEEEEecCCeEEEEEccCCCceeeecC-------------CCCeeEEEEcCC-CCEEEEEecCCe
Q 013338 213 EQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRRG-------------FGGLSILKWSPT-GDYFFAAKFDGT 277 (445)
Q Consensus 213 ~~v~~~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-------------~~~v~~~~~sp~-g~~l~~~~~dg~ 277 (445)
..+.++.++|. ...|+.+... +.|...+-.......+... ...+.+++++|. ...|.++.. +.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TE
T ss_pred CceeEEEECCCCCCEEEEEECC-CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-Ce
Confidence 46788999883 4556666555 4444432222222222110 124888999986 456666654 44
Q ss_pred EEEEeCCCCCcccccC-C-C---CCeeEEEECCC-CCeEEEE
Q 013338 278 FYLWETNTWTSEPWSS-T-S---GFVTGATWDPE-GRMILLA 313 (445)
Q Consensus 278 v~iwd~~~~~~~~~~~-~-~---~~v~~~~~sp~-~~~l~~~ 313 (445)
|+..+-.......+.. . . ..+..+.++|. ...|.++
T Consensus 255 l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 255 IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 5555433322222211 1 1 34567888763 3344444
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.74 E-value=25 Score=31.73 Aligned_cols=100 Identities=7% Similarity=-0.032 Sum_probs=52.3
Q ss_pred ceeEEEECCC--CCeEEEEEecCCeEEEEEccCCCceeeec-------------------CCCCeeEEEEcCC-CCEEEE
Q 013338 214 QITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRR-------------------GFGGLSILKWSPT-GDYFFA 271 (445)
Q Consensus 214 ~v~~~~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-------------------~~~~v~~~~~sp~-g~~l~~ 271 (445)
.|.++++.|. ...|+++... +.|...+-.......+.. ....+.+|.++|. ...|.+
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~-ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSP-QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEET-TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecC-CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 5788999872 4566666666 455544322222222211 1235788999884 445555
Q ss_pred EecCCeEEEEeCCCCCcccccC--C-----------CCCeeEEEECCC-CCeEEEEE
Q 013338 272 AKFDGTFYLWETNTWTSEPWSS--T-----------SGFVTGATWDPE-GRMILLAF 314 (445)
Q Consensus 272 ~~~dg~v~iwd~~~~~~~~~~~--~-----------~~~v~~~~~sp~-~~~l~~~~ 314 (445)
+..++.|+..+-.......+.. . ...+.++.++|. ...|+++.
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 5555555554322222222110 0 134788999986 34555553
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=83.00 E-value=40 Score=33.59 Aligned_cols=189 Identities=8% Similarity=-0.001 Sum_probs=103.9
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe-cC----CCCCeeEEEECcCCCcEEEEecCCcEEEEc
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT-SD----SQRDVKVLEWRPNGGRSLSVGCKGGICIWA 172 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~-~~----~~~~v~~l~~spd~~~l~~~~~dg~i~vw~ 172 (445)
....|.++.-..+|.+-+ |+ ++-+..++... ++...... .. ....|.++...++ +.|.++...+.+.+++
T Consensus 371 ~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 371 SHNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT--RQFIHYNIVDNTGTYNTNWTYYIFEDTA-GQLWISTCLGGIFVVD 445 (758)
T ss_dssp SCSCEEEEEECTTSCEEE-EE-TTEEEEEETTT--TEEEEEEEECCC--CBSSSEEEEEECTT-SEEEEEESSSCEEEEE
T ss_pred CCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC--CcEEEeecCCCcCCCCCceEEEEEEcCC-CCEEEEECCCceEEEc
Confidence 344688888888887655 44 45677788642 33222111 11 1245888888777 5677777666788887
Q ss_pred cCCCC--CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 173 PSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 173 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
..... ....+... .......+-....|.++...++|+.-+.++.. +-+..+|..+++...+
T Consensus 446 ~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~-~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 446 KHKLMQSTSGQYIAE----------------QNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN-KGIDKINPRTREVTKL 508 (758)
T ss_dssp HHHHHHCCSSEEECS----------------EEECGGGTCSCSCEEEEEECTTSCEEEEETTC-SSEEEEETTTTEEEEE
T ss_pred cccccccCCcceecc----------------cccccccccccceeeeEEEcCCCCEEEEccCC-CCcEEEeCCCCceEEe
Confidence 54100 00000000 00000011112468899998888866533444 3588889887655544
Q ss_pred ecC----CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--C-CCCCeeEEEECCCCCeEE
Q 013338 251 RRG----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S-TSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 251 ~~~----~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~ 311 (445)
... ...+.++....+|...+ |+.. -+..||..+.+...+. + ....|.++... +|++.+
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi 573 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV 573 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE
T ss_pred cCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE
Confidence 321 24577888887787655 4444 5888998776654432 1 12457777664 555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 445 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.003 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 8e-09
Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 215 ITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA 272
I A+ + P+G A+ S +++ F + + + G++ + +S +G A
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 273 KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL 311
D +W+ + V+ +G +
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 27/176 (15%)
Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166
F+SG+ + ++ EG T + D+ + + PNG +
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDA 248
Query: 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226
++ L+ + IT++S+ GR
Sbjct: 249 TCRLFDLRAD------------------------QELMTYSHDNIICGITSVSFSKSGRL 284
Query: 227 LASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLW 281
L + + + +WD + + G +S L + G +D +W
Sbjct: 285 LLAGY-DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 28/137 (20%)
Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164
+ + + + A S + D + + + + + +G L+
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYD 290
Query: 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224
+W L + ++ L DG
Sbjct: 291 DFNCNVW---------DALKA----------------DRAGVLAGHDNR-VSCLGVTDDG 324
Query: 225 RYLASASYESSSFTIWD 241
+A+ S++ S IW+
Sbjct: 325 MAVATGSWD-SFLKIWN 340
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.9 bits (125), Expect = 3e-08
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYF 269
E I+ +W D +A + I++ + + G ++ + W+P +
Sbjct: 8 EPISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 270 FAAKFDGTFYLWETNTWTSEPW 291
D Y+W T +P
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPT 88
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.8 bits (83), Expect = 0.004
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMIL 311
W+ + +++E + +G VTG W P+ I+
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG----GLSILKWSPTGD-- 267
T LS+ P +A +S+ D P+ + G ++ +K+SP
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 268 YFFAAKFDGTFYLWETNT---------WTSEPWSSTSGFVTGATWDPEGRM 309
Y + G +W + +G ++ +WD EGR
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 25/202 (12%), Positives = 57/202 (28%), Gaps = 9/202 (4%)
Query: 82 SHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS 141
+ + + V ++ S S VR + + + L
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR- 182
Query: 142 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW 201
+ + V+ + W P S G + S S + +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-----GSRDKTIKMWDVSTG 237
Query: 202 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSIL 260
+ L + + + + G+++ S + + + +WD + ++ L
Sbjct: 238 MCLMTLVGHDN-WVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 261 KWSPTGDYFFAAKFDGTFYLWE 282
+ T Y D T +WE
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 12/207 (5%)
Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 166
+ + S + + + + C+ T R+ + G ++
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVRPNQDGTLIASCSND 164
Query: 167 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226
+ + +S P + ++ + G G +
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG-----SETKKSGKPGPF 219
Query: 227 LASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNT 285
L S S + + +WDV+ G+ G + + + G + + D T +W+
Sbjct: 220 LLSGSRDKT-IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 278
Query: 286 WTS-EPWSSTSGFVTGATWDPEGRMIL 311
+ ++ FVT + ++
Sbjct: 279 KRCMKTLNAHEHFVTSLDFHKTAPYVV 305
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 6e-06
Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 28/189 (14%)
Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQR------DVKVLEWRPNGGRSL 160
+GS VR ++ G L S+++ V + + +G +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 220
S + +W N S + + + + +++
Sbjct: 271 SGSLDRSVKLWNLQNANN--------------KSDSKTPNSGTCEVTYIGHKDFVLSVAT 316
Query: 221 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG-------LSILKWSPTGDYFFAAK 273
+ Y+ S S + WD G + +G + P + F
Sbjct: 317 TQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375
Query: 274 FDGTFYLWE 282
D +W+
Sbjct: 376 GDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 215 ITALSWGPDGRYLASASYESS------------SFTIWDVAQGLGTPIRRGFGGLSILKW 262
+ ++ + DG+ + S S + S S + + + +
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMIL 311
+ +Y + D W+ + + G++ PE +
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 276
+L + G++ S ++ W G + + S Y D
Sbjct: 270 SLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 277 TFYLWE 282
++E
Sbjct: 329 KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 273
QI +L + P G +LA S+ + LS+ K++ G +F +
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL-KFAYCGKWFVSTG 284
Query: 274 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 311
D W T S S S V + + I+
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF------GGLSILKWSPT 265
GE + A++ R++ + +WD++ + K P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 266 GDYFFAAKFDGTFYLWETNTWTSEPW 291
G T +W+ T
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIK 134
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPT 265
L L P G + + +S V T I ++ K SP+
Sbjct: 12 LPRTARGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69
Query: 266 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 297
G Y + G +W+T T ++ F
Sbjct: 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 101
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.4 bits (82), Expect = 0.004
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 219 SWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 276
+W PDG +ASAS + + IW+VA T L T + +G
Sbjct: 245 TWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 277 TFYLWE 282
Sbjct: 304 FINFVN 309
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 24/237 (10%), Positives = 54/237 (22%), Gaps = 15/237 (6%)
Query: 183 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242
R+ ++ P L D R G ++ + L + SS+ V
Sbjct: 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV 153
Query: 243 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS------- 295
+ + + + + + +
Sbjct: 154 PG--ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211
Query: 296 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 355
A + G ++ A A S+ G I A + G +
Sbjct: 212 CSSQAAQANYPGM-LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA--GFQM 268
Query: 356 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 412
+A + + + + A + G I G + + +
Sbjct: 269 VAKLKNTDGIMILTVEHSRSCLA--AAENTSSVTASVGQTSGPI-SNGHDSDAIIAA 322
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (100), Expect = 6e-05
Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 9/172 (5%)
Query: 212 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------GFGGLSILKWSPT 265
G + GRYL + D+ T + +
Sbjct: 61 GYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119
Query: 266 GDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSI 323
Y A + + + + T + ST G + PE R+ + + +
Sbjct: 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI 375
+ L ++ ++ + + D S + + +
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL 231
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.1 bits (97), Expect = 9e-05
Identities = 22/185 (11%), Positives = 58/185 (31%), Gaps = 1/185 (0%)
Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC 164
+ + K+ + + ++ ++ +S+ + + + R +++
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203
Query: 165 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224
K S G A S+ R ++ + + ++ + P
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263
Query: 225 RYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284
++L +A + W++ F S++K + + + A D TF
Sbjct: 264 KFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI 322
Query: 285 TWTSE 289
T E
Sbjct: 323 DQTIE 327
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.001
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 5/61 (8%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF----GGLSILKWSPTGDYFF 270
I+ + P L S++ S T++ L + D
Sbjct: 14 ISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 271 A 271
Sbjct: 73 Y 73
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.001
Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 218 LSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA-KF 274
+ Y+ +Y ++ + DVA + + G +P +
Sbjct: 2 PALKAGHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE 306
G Y + +T + ++ S
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 37.8 bits (86), Expect = 0.002
Identities = 16/182 (8%), Positives = 28/182 (15%), Gaps = 9/182 (4%)
Query: 202 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------LGTPIRRGF 254
T+ + PD R + D+ L +
Sbjct: 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 88
Query: 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF 314
+ SP G +A P G P +
Sbjct: 89 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP--PRLEVFSTADGLEAKPVRTFPMPRQ 146
Query: 315 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 374
+ + V+L K +
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 206
Query: 375 IY 376
Sbjct: 207 FS 208
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.5 bits (85), Expect = 0.002
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274
+ G Y A E +DV T ++ L+ L+ S K
Sbjct: 279 YSVPVHGEFAAYYQGAP-EKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKD 334
Query: 275 DGTFYLWETNTWTSE 289
DG Y + E
Sbjct: 335 DGKIYTFPLEKPEDE 349
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.003
Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 10/178 (5%)
Query: 207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG 266
L + G S DG ++ S S ++S +WDV G G L
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTS-IRVWDVETGNCIHTLTGHQSL-TSGMELKD 227
Query: 267 DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326
+ + D T +W+ T A + + + G++
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD--DGTVKLW 285
Query: 327 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384
L +L + S + +I + AV + + + + D
Sbjct: 286 ----DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG--SRNGTEETKLLVLD 337
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 0.003
Identities = 27/204 (13%), Positives = 55/204 (26%), Gaps = 18/204 (8%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWD----VAQGLGTPIRRGFGGLSILKWSPTGDYF 269
QIT L+W DG L + + + + + +L +
Sbjct: 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195
Query: 270 FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329
+ + + + + T + R + + + ++
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 330 PSLDAHLLPVDLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386
L DL I + + G + + GD +A YDA
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD------LAAYDAE 309
Query: 387 RTPLISLSLIGFIRGPGDNPKPVA 410
+L G + PG+ +A
Sbjct: 310 -----TLEKKGQVDLPGNASMSLA 328
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 445 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.65 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.61 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.61 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.61 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.56 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.51 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.44 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.41 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.3 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.15 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.15 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.13 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.13 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.09 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.08 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.03 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.01 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.56 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.48 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.39 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.32 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.2 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.71 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.5 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.48 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.38 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.26 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.81 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.13 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.08 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.04 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.01 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.0 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.23 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 95.11 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.57 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.86 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.38 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.08 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.61 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.57 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.06 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 85.93 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.03 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.2 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 80.81 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-39 Score=293.99 Aligned_cols=283 Identities=16% Similarity=0.200 Sum_probs=230.4
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc-ee-EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD-AC-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~-~~-~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|.+++|+|+|++||+|+ ||.|+|||+....... .. ....+|.+.|.+++|+|+++.|++++.|+.|++||+...
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~ 129 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc
Confidence 45699999999999999987 8999999997543322 12 223478999999999999988999999999999998722
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG 255 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~ 255 (445)
. ..+...+..|. ..+.+++|+|++.++++++.+ +.|++|++.+++... ...|..
T Consensus 130 ~-----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-~~i~~~~~~~~~~~~~~~~~~~ 184 (337)
T d1gxra_ 130 T-----------------------PRIKAELTSSA-PACYALAISPDSKVCFSCCSD-GNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp -------------------------EEEEEEECSS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred c-----------------------ccccccccccc-ccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 1 12445566665 789999999999999999999 699999999887654 445788
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
.+.+++|++++..+++++.|+.|++||+++++......+...|.+++|+|+++++++++. ++.+..|++.
T Consensus 185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~i~d~~--------- 254 (337)
T d1gxra_ 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVN--------- 254 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETT---------
T ss_pred ccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecc-cccccccccc---------
Confidence 999999999999999999999999999999887666678889999999999999997654 3445555542
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.........|. .|++++|+|+|++|++++.| +.|++||+.+++.+. ...|...|++++|+||
T Consensus 255 -----~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D------g~i~iwd~~~~~~~~------~~~~~~~v~~~~~s~d 317 (337)
T d1gxra_ 255 -----KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASIF------QSKESSSVLSCDISVD 317 (337)
T ss_dssp -----SSCEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEE------EEECSSCEEEEEECTT
T ss_pred -----ccccccccccccccceEEECCCCCEEEEEeCC------CeEEEEECCCCCEEE------EccCCCCEEEEEEeCC
Confidence 12223345566 89999999999999999988 999999999887662 2347889999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeeeeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
|++ |+.|..||.|.+|+++|
T Consensus 318 ~~~-----l~t~s~D~~I~vWdl~~ 337 (337)
T d1gxra_ 318 DKY-----IVTGSGDKKATVYEVIY 337 (337)
T ss_dssp SCE-----EEEEETTSCEEEEEEEC
T ss_pred CCE-----EEEEeCCCeEEEEEEEC
Confidence 875 77788899999999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.8e-36 Score=268.51 Aligned_cols=277 Identities=14% Similarity=0.221 Sum_probs=228.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|++++|+|++++||+|+.|++|+|||++ +++.+..+ .+|...|.+++|+|++..++++..++.+.+|+.....
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~--~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYE--TGDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE-- 92 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETT--TCCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC--
T ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CCCEEEEE-eCCCCcEEEEeeecccccccccccccccccccccccc--
Confidence 459999999999999999999999999995 46666665 5799999999999998888888888999999877222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
....+..|. ..+.++.|+|+++.+++++.| +.+++||+++++... +..|...+.
T Consensus 93 -----------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (317)
T d1vyhc1 93 -----------------------CIRTMHGHD-HNVSSVSIMPNGDHIVSASRD-KTIKMWEVQTGYCVKTFTGHREWVR 147 (317)
T ss_dssp -----------------------EEECCCCCS-SCEEEEEECSSSSEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEE
T ss_pred -----------------------ccccccccc-ccceeeeccCCCceEEeeccC-cceeEeecccceeeeEEccCCCcce
Confidence 223344554 789999999999999999999 799999999887654 456788999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCC--------------------eEEEEEcCC
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--------------------MILLAFAGS 317 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~--------------------~l~~~~~~~ 317 (445)
+++|+|++++|++++.|+.|++|+..+++. ..+..+...+.+++|+|++. +++++ ..+
T Consensus 148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d 226 (317)
T d1vyhc1 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRD 226 (317)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-ETT
T ss_pred eeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec-cCC
Confidence 999999999999999999999999999877 45667888899999887653 34433 333
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI 396 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~ 396 (445)
+.+..+++ . +...+.++.+|. .|.+++|+|++++|++++.| |.|++||+++++.+
T Consensus 227 ~~i~~~~~---~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~----- 282 (317)
T d1vyhc1 227 KTIKMWDV---S----------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD------KTLRVWDYKNKRCM----- 282 (317)
T ss_dssp SEEEEEET---T----------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETT------TEEEEECCTTSCCC-----
T ss_pred CEEEEEEC---C----------CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC------CeEEEEECCCCcEE-----
Confidence 44444443 2 455677788888 89999999999999999988 99999999987655
Q ss_pred eeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 397 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 397 ~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
..+.+|...|++++|+|++++ |+.|..||.|.+|+
T Consensus 283 ~~~~~h~~~V~~~~~s~~~~~-----l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 283 KTLNAHEHFVTSLDFHKTAPY-----VVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSC-----EEEEETTSEEEEEC
T ss_pred EEEcCCCCCEEEEEEcCCCCE-----EEEEeCCCeEEEeC
Confidence 478899999999999999885 67788899999885
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3e-35 Score=264.76 Aligned_cols=297 Identities=12% Similarity=0.194 Sum_probs=220.4
Q ss_pred ccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcE
Q 013338 89 LHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI 168 (445)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i 168 (445)
.+|..|....+ .+..++++|+|+.||+++ ++.+.+|+++. ......+ .+|...|++++|+|+|++|++++.||.|
T Consensus 8 ~~~~~p~~~r~-~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~--~~~~~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i 82 (311)
T d1nr0a1 8 LFPSLPRTARG-TAVVLGNTPAGDKIQYCN-GTSVYTVPVGS--LTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNV 82 (311)
T ss_dssp EECCCCCCCTT-CCCCCEECTTSSEEEEEE-TTEEEEEETTC--SSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccCCCCCCCC-CeEEEEEcCCCCEEEEEe-CCEEEEEECCC--CceeEEE-cCCCCCEEEEEEeCCCCeEeccccCceE
Confidence 34444444333 456789999999999875 66799999964 4444444 5799999999999999889999999999
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-CeEEEEEccCCCc
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLG 247 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-g~v~vwd~~~~~~ 247 (445)
+||++...... ....+..|. ..|.+++|+|++++|++++.+. ..+++|++++++.
T Consensus 83 ~iwd~~~~~~~-----------------------~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~ 138 (311)
T d1nr0a1 83 RIWDTTQTTHI-----------------------LKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138 (311)
T ss_dssp EEEESSSTTCC-----------------------EEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred eeeeeeccccc-----------------------ccccccccc-Cccccccccccccccccccccccccccccccccccc
Confidence 99999843321 223456675 7999999999999999988641 3699999998776
Q ss_pred e-eeecCCCCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 248 T-PIRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 248 ~-~~~~~~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
. .+..|...|++++|+|++++ |++|+.|+.|++||+++++. ..+..|...|+++.|+|+++++++++. ++.+..|+
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~-d~~v~~~d 217 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYN 217 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEE
T ss_pred cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc-cccccccc
Confidence 4 45567889999999999885 78899999999999999877 456688899999999999999987643 34455554
Q ss_pred eccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 403 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (445)
+.... ....+ ........+|. .|++++|+|++++|++|+.| +.|+|||+++++++ +.+..|.
T Consensus 218 ~~~~~---~~~~~---~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D------g~v~iwd~~t~~~~-----~~l~~~~ 280 (311)
T d1nr0a1 218 GVDGT---KTGVF---EDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVE-----KTIPVGT 280 (311)
T ss_dssp TTTCC---EEEEC---BCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCS
T ss_pred ccccc---ccccc---cccccccccccccccccccCCCCCEEEEEeCC------CeEEEEECCCCcEE-----EEEECCC
Confidence 43221 11111 11122344677 89999999999999999988 99999999987765 3555544
Q ss_pred C-CCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 404 D-NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 404 ~-~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
. ....+.+.+++.+ +..+..+|.|.+|+.
T Consensus 281 ~~~~~~~~~~~~~~~-----l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 281 RIEDQQLGIIWTKQA-----LVSISANGFINFVNP 310 (311)
T ss_dssp SGGGCEEEEEECSSC-----EEEEETTCCEEEEET
T ss_pred CccceEEEEEecCCE-----EEEEECCCEEEEEeC
Confidence 3 2334455555543 555668999999874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-34 Score=269.47 Aligned_cols=298 Identities=16% Similarity=0.184 Sum_probs=227.4
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEE-----------------ecCCCCCeeEEEECcCCCcEE
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACIL-----------------TSDSQRDVKVLEWRPNGGRSL 160 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~-----------------~~~~~~~v~~l~~spd~~~l~ 160 (445)
+...|+|++|||||++||+|+ |+.|+||++.. ++.+..+ ...|...|++++|+|+++.|+
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD--GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT--CCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecc--cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 456899999999999999986 89999999853 4433322 124677899999999999999
Q ss_pred EEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEE
Q 013338 161 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 240 (445)
Q Consensus 161 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vw 240 (445)
+++.||.|++|+.... .....+.+|. ..|.+++|++++..+++++.+ |.+++|
T Consensus 138 s~~~dg~v~i~~~~~~-------------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~-~~i~~~ 190 (388)
T d1erja_ 138 TGAEDRLIRIWDIENR-------------------------KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGD-RTVRIW 190 (388)
T ss_dssp EEETTSCEEEEETTTT-------------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEEEEE
T ss_pred eccccccccccccccc-------------------------cccccccccc-ccccccccccccccccccccc-eeeeee
Confidence 9999999999998722 3455567775 899999999999999999988 799999
Q ss_pred EccCCCceeeecCCCCeeEEEEcC-CCCEEEEEecCCeEEEEeCCCCCcc--------cccCCCCCeeEEEECCCCCeEE
Q 013338 241 DVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE--------PWSSTSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 241 d~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~~~~sp~~~~l~ 311 (445)
|..+........+.....++.+++ ++++|++++.|+.|++||.+++... ....|...|++++|+|++++|+
T Consensus 191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 270 (388)
T d1erja_ 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270 (388)
T ss_dssp ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence 999887776666666677777765 7899999999999999999987752 2236788999999999999998
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCe
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL 390 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~ 390 (445)
+++ .++.+..|++.......... .............|. .|.+++|+|+|++|++|+.| |.|++||+++++.
T Consensus 271 s~~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d------g~i~vwd~~~~~~ 342 (388)
T d1erja_ 271 SGS-LDRSVKLWNLQNANNKSDSK-TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------RGVLFWDKKSGNP 342 (388)
T ss_dssp EEE-TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------SEEEEEETTTCCE
T ss_pred EEE-CCCcEEEEeccCCccccccc-cccccceeeecccccceEEEEEECCCCCEEEEEeCC------CEEEEEECCCCcE
Confidence 764 34555555543322111100 011222334455666 89999999999999999988 9999999998776
Q ss_pred eeeeeeeeeeCCCCCCCceeEeecCCCC-CCCeEEEEecCeeeEeeeee
Q 013338 391 ISLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 391 ~~~~~~~~~~~~~~~v~~v~~spdg~~~-~~~~l~~~~~~G~v~~~~~~ 438 (445)
+ ..+.+|.+.|.++++++...+. .+.+|+.|..||.|.+|++-
T Consensus 343 ~-----~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 343 L-----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp E-----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred E-----EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 5 4788999999999877655442 35578888899999999873
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.6e-35 Score=273.71 Aligned_cols=292 Identities=12% Similarity=0.156 Sum_probs=217.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
.+|+|++|+|||++||+|+.|+.|+||+++..+...... ..+|.++|++++|+|++++|++++.|+.|+||++...
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~-l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~--- 83 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR--- 83 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE-EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT---
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEE-ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc---
Confidence 469999999999999999999999999986422223333 3589999999999999999999999999999998722
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-----eecCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGF 254 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-----~~~~~ 254 (445)
.+.....+.+|. ..|.+++|+|+++.|++++.+ |.+++|++....... ...|.
T Consensus 84 --------------------~~~~~~~~~~~~-~~v~~i~~~p~~~~l~~~s~d-~~i~i~~~~~~~~~~~~~~~~~~~~ 141 (371)
T d1k8kc_ 84 --------------------TWKPTLVILRIN-RAARCVRWAPNEKKFAVGSGS-RVISICYFEQENDWWVCKHIKKPIR 141 (371)
T ss_dssp --------------------EEEEEEECCCCS-SCEEEEEECTTSSEEEEEETT-SSEEEEEEETTTTEEEEEEECTTCC
T ss_pred --------------------cccccccccccc-ccccccccccccccceeeccc-Ccceeeeeecccccccccccccccc
Confidence 233344455664 789999999999999999999 799999998765422 22467
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-------------------ccccCCCCCeeEEEECCCCCeEEEEEc
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------------EPWSSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
..|.+++|+|++++|++++.|+.|++||...... .....|...|.+++|+|++++|++++.
T Consensus 142 ~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 221 (371)
T d1k8kc_ 142 STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221 (371)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence 8899999999999999999999999999875432 122367778999999999999987753
Q ss_pred CCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc--CCCeee
Q 013338 316 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLIS 392 (445)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~--~~~~~~ 392 (445)
++.+..|++. ....+..+..|. +|.+++|+|++++|++|+ | +.+++|... .+....
T Consensus 222 -d~~i~iwd~~-------------~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d------~~~~~~~~~~~~~~~~~ 280 (371)
T d1k8kc_ 222 -DSTVCLADAD-------------KKMAVATLASETLPLLAVTFITESSLVAAGH-D------CFPVLFTYDSAAGKLSF 280 (371)
T ss_dssp -TTEEEEEEGG-------------GTTEEEEEECSSCCEEEEEEEETTEEEEEET-T------SSCEEEEEETTTTEEEE
T ss_pred -CCcceEEeee-------------cccceeeeecccccceeeeecCCCCEEEEEc-C------CceEEEEeeCCCceEEE
Confidence 4555555543 445566777787 899999999999888764 4 445554433 222110
Q ss_pred ee---------------------------------e-eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 393 LS---------------------------------L-IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 393 ~~---------------------------------~-~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.. . ......|...|+++++.+.+..... .++.+-.||.|.+|++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~-~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEHH
T ss_pred eeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceE-EEEEEcCCCeEEEEeCC
Confidence 00 0 0000137778999999997765333 34445579999999884
Q ss_pred e
Q 013338 439 F 439 (445)
Q Consensus 439 ~ 439 (445)
.
T Consensus 360 ~ 360 (371)
T d1k8kc_ 360 S 360 (371)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-34 Score=258.78 Aligned_cols=283 Identities=10% Similarity=0.084 Sum_probs=211.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|++||+|+.|+.|++||++ +++....+...|...|++++|+|++ .+++++.|+.+++|+.......
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~--~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEGHINSWDIS--TGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT--TCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSC
T ss_pred CCcEEEEECCCCCEEEEEcCCCeEEEEECC--CCcEEEEEcCCCCCcEEEEEeeccc-eeecccceeeEEEeccCCcccc
Confidence 459999999999999999999999999985 4666666656799999999999995 6888899999999998733211
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
.. .. ....+ ...+.+++|+|+++.+++++ + +.+++|+.... ........+.+
T Consensus 90 ~~-~~---------------------~~~~~-~~~~~~~~~s~~g~~~~~~~-~-~~i~~~~~~~~---~~~~~~~~~~~ 141 (299)
T d1nr0a2 90 SS-KA---------------------VANKL-SSQPLGLAVSADGDIAVAAC-Y-KHIAIYSHGKL---TEVPISYNSSC 141 (299)
T ss_dssp TT-SC---------------------CEEEC-SSCEEEEEECTTSSCEEEEE-S-SEEEEEETTEE---EEEECSSCEEE
T ss_pred cc-cc---------------------ccccc-cccccccccccccccccccc-c-ccccccccccc---ccccccccccc
Confidence 11 00 01223 36788999999998777665 5 48999985422 22234556889
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcc--cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
++|+|++++|++++.|+.|++||+++++.. ....|...|++++|+|++++|+++. .++.+..|++....
T Consensus 142 ~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~-------- 212 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNF-------- 212 (299)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTT--------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc--------
Confidence 999999999999999999999999887763 3447888999999999999998764 44556666654321
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCC-CCCCCceeEeecC
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHD 415 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~v~~spdg 415 (445)
.......+.+|. .|++++|+|++++|++++.| +.|++||++++..... .....| ...+..+.| +++
T Consensus 213 --~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~-~~~ 280 (299)
T d1nr0a2 213 --ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPI---IIKGAHAMSSVNSVIW-LNE 280 (299)
T ss_dssp --EESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCE---EETTSSTTSCEEEEEE-EET
T ss_pred --cccccccccccccccccccccccccceEEEcCC------CEEEEEECCCCCcceE---EEecCCCCCcEEEEEE-CCC
Confidence 122344566777 89999999999999999988 8999999987654311 122233 345555555 555
Q ss_pred CCCCCCeEEEEecCeeeEeeeeee
Q 013338 416 KFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 416 ~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
++ |..+.+||.|.+|++-|
T Consensus 281 ~~-----l~s~s~D~~i~iWdl~~ 299 (299)
T d1nr0a2 281 TT-----IVSAGQDSNIKFWNVPF 299 (299)
T ss_dssp TE-----EEEEETTSCEEEEECCC
T ss_pred CE-----EEEEeCCCEEEEEeccC
Confidence 43 55566899999999854
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-34 Score=260.71 Aligned_cols=238 Identities=12% Similarity=0.154 Sum_probs=199.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++|+|+|++|++|+.|+.|++|++...+.+....+ ..|...+..++|+|++..+++++.++.|++|++...
T Consensus 98 ~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~--- 173 (337)
T d1gxra_ 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--- 173 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---
T ss_pred CcEEEEEEcCCCCEEEEeeccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc---
Confidence 4699999999999999999999999999875555444444 468899999999999888888889999999998722
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeE
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI 259 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~ 259 (445)
.+......|. ..|.+++|+++++.+++++.| |.+++||+++++......+...|.+
T Consensus 174 ----------------------~~~~~~~~~~-~~v~~l~~s~~~~~~~~~~~d-~~v~i~d~~~~~~~~~~~~~~~i~~ 229 (337)
T d1gxra_ 174 ----------------------TLVRQFQGHT-DGASCIDISNDGTKLWTGGLD-NTVRSWDLREGRQLQQHDFTSQIFS 229 (337)
T ss_dssp ----------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ----------------------cccccccccc-ccccccccccccccccccccc-ccccccccccceeecccccccceEE
Confidence 2444556665 799999999999999999999 7999999999988878888999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCc
Q 013338 260 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV 339 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (445)
++|+|++++|++++.|+.+++||+++++......|...|++++|+|++++|++++. ++. +++|+..
T Consensus 230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~-Dg~---i~iwd~~---------- 295 (337)
T d1gxra_ 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNL---LNAWRTP---------- 295 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-TSE---EEEEETT----------
T ss_pred EEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeC-CCe---EEEEECC----------
Confidence 99999999999999999999999999988777889999999999999999997643 344 4444432
Q ss_pred cccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 340 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 340 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
..+.+..+..+..|.+++|+|++++|++++.| ++|+|||+
T Consensus 296 ~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D------~~I~vWdl 335 (337)
T d1gxra_ 296 YGASIFQSKESSSVLSCDISVDDKYIVTGSGD------KKATVYEV 335 (337)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSCEEEEEETT------SCEEEEEE
T ss_pred CCCEEEEccCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEEE
Confidence 33444444444489999999999999999988 99999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-33 Score=254.67 Aligned_cols=280 Identities=13% Similarity=0.225 Sum_probs=218.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|++++||+|+.||+|+|||+. +++.+..+ ..|...|.+++|+|++..+++++.|+.+++|+.......
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~--~~~~~~~~-~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 132 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSY--TTNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT--TTEEEEEE-ECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred CCEEEEEECCCCCEEEEEECCCceeeeecc--cceeEEEE-ecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence 459999999999999999999999999985 46655555 469999999999999999999999999999998733222
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~ 258 (445)
. .....+.+|. ........ ..+..+.....+ +....+........ ....+...+.
T Consensus 133 ~---------------------~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 133 V---------------------RVSRELAGHT-GYLSCCRF-LDDNQIVTSSGD-TTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp C---------------------CEEEEECCCS-SCEEEEEE-EETTEEEEEETT-TEEEEEETTTTEEEEEEECCSSCEE
T ss_pred c---------------------ccceeccccc-cccccccc-cccccccccccc-ccccccccccccccccccccceeEe
Confidence 1 2334456664 34444444 344566777777 58888887765543 3445677889
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
...+.+.+.++++++.|+.|++||+++++. ..+..|...|++++|+|++++|++++. ++.+..|++..
T Consensus 189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~-d~~i~~~~~~~---------- 257 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRA---------- 257 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTT----------
T ss_pred eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeecc----------
Confidence 999999999999999999999999999887 567789999999999999999987643 44555554421
Q ss_pred Cccccccccc--cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 338 PVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 338 ~~~~~~~~~~--~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
...+..+ ..+. .|.+++|+|++++|++|+.| |.|++||+.+++.+ ..+.+|...|++++|+||
T Consensus 258 ---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d------g~i~iwd~~~~~~~-----~~~~~H~~~V~~l~~s~d 323 (340)
T d1tbga_ 258 ---DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp ---TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT------SCEEEEETTTCCEE-----EEECCCSSCEEEEEECTT
T ss_pred ---cccccccccccccCceEEEEECCCCCEEEEEECC------CEEEEEECCCCcEE-----EEEcCCCCCEEEEEEeCC
Confidence 1222222 2333 79999999999999999988 89999999987765 478899999999999999
Q ss_pred CCCCCCCeEEEEecCeeeEeee
Q 013338 415 DKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 415 g~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+++ |+.|..||.|.+|+
T Consensus 324 ~~~-----l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 324 GMA-----VATGSWDSFLKIWN 340 (340)
T ss_dssp SSC-----EEEEETTSCEEEEC
T ss_pred CCE-----EEEEccCCEEEEeC
Confidence 886 66777899999885
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.2e-33 Score=250.66 Aligned_cols=240 Identities=17% Similarity=0.135 Sum_probs=186.5
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~ 176 (445)
...|++++|+|+|++||+|+.||.|+||++....... ......|..+|.+++|+|+++.+++++.+ ..++||+++..
T Consensus 58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~ 136 (311)
T d1nr0a1 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred CCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc-ccccccccCccccccccccccccccccccccccccccccccc
Confidence 4579999999999999999999999999997533322 23335789999999999998888888764 67999998844
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCcee-eecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP-IRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~~-~~~~~ 254 (445)
... ..+.+|. ..|++++|+|++++ |++++.| |.|++||+++++... ...|.
T Consensus 137 ~~~-------------------------~~l~~h~-~~v~~v~~~~~~~~~l~sgs~d-~~i~i~d~~~~~~~~~~~~~~ 189 (311)
T d1nr0a1 137 TSN-------------------------GNLTGQA-RAMNSVDFKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHT 189 (311)
T ss_dssp CBC-------------------------BCCCCCS-SCEEEEEECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCS
T ss_pred ccc-------------------------ccccccc-cccccccccccceeeecccccc-ccccccccccccccccccccc
Confidence 322 2355665 78999999999986 6777778 799999999887654 44578
Q ss_pred CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc--------cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
..|++++|+|++++|++++.|+.|++||..+++.. ...+|...|++++|+|++++|++++. ++. +++|
T Consensus 190 ~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-Dg~---v~iw 265 (311)
T d1nr0a1 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKT---IKIW 265 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSE---EEEE
T ss_pred ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC-CCe---EEEE
Confidence 89999999999999999999999999999887642 23367889999999999999997743 444 4445
Q ss_pred cCCCCccccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 327 SKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+.. +.+.++++..+. ....+.+.+++++|++++.| |.|++||.+
T Consensus 266 d~~----------t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d------G~i~~wd~d 311 (311)
T d1nr0a1 266 NVA----------TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN------GFINFVNPE 311 (311)
T ss_dssp ETT----------TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT------CCEEEEETT
T ss_pred ECC----------CCcEEEEEECCCCccceEEEEEecCCEEEEEECC------CEEEEEeCC
Confidence 432 445566666554 33344455566789999988 999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8e-32 Score=248.72 Aligned_cols=251 Identities=13% Similarity=0.185 Sum_probs=193.6
Q ss_pred CCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC
Q 013338 143 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 222 (445)
Q Consensus 143 ~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 222 (445)
..++|++++|+||++.+++++.|+.|+||++.. +++.+...+++|. ..|.+++|+|
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~-----------------------~~~~~~~~l~gH~-~~V~~l~fsp 61 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-----------------------NKWVQVHELKEHN-GQVTGVDWAP 61 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEET-----------------------TEEEEEEEEECCS-SCEEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------CCEEEEEEecCCC-CCEEEEEECC
Confidence 457899999999988888888899999999862 2445677788986 8999999999
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCcee---eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-----ccccCC
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSST 294 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~ 294 (445)
++++|++++.| |+|++||+.++.... +..+...|.+++|+|++++|++++.|+.|++|++..... .....|
T Consensus 62 ~~~~l~s~s~D-~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~ 140 (371)
T d1k8kc_ 62 DSNRIVTCGTD-RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI 140 (371)
T ss_dssp TTTEEEEEETT-SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC
T ss_pred CCCEEEEEECC-CeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccc
Confidence 99999999999 799999998776432 345678899999999999999999999999999877653 224467
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc--cccC---ccccccccccCCC-ccceEEeCCCCCEEEEE
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA--HLLP---VDLPDIVSLTGSQ-GIEKIAWDASGERLAVS 368 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~ 368 (445)
...|.+++|+|++++|++++ .++.+..|++......... ..+. .....+.....|. .|.+++|+|+|++|+++
T Consensus 141 ~~~v~~v~~~p~~~~l~s~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 141 RSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp CSCEEEEEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred ccccccccccccccceeccc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence 88999999999999998764 3455555554332111110 0000 0122344555676 79999999999999999
Q ss_pred EcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 369 YKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 369 s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+.| +.|++||+.+++.+ ..+..|..+|.+++|+||+++ ++.|. ++.+.++.
T Consensus 220 ~~d------~~i~iwd~~~~~~~-----~~~~~~~~~v~s~~fs~d~~~-----la~g~-d~~~~~~~ 270 (371)
T d1k8kc_ 220 SHD------STVCLADADKKMAV-----ATLASETLPLLAVTFITESSL-----VAAGH-DCFPVLFT 270 (371)
T ss_dssp ETT------TEEEEEEGGGTTEE-----EEEECSSCCEEEEEEEETTEE-----EEEET-TSSCEEEE
T ss_pred ccC------CcceEEeeecccce-----eeeecccccceeeeecCCCCE-----EEEEc-CCceEEEE
Confidence 988 99999999987665 467789999999999999874 66665 45554443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-30 Score=235.38 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=204.4
Q ss_pred CeeEEEEccCCCEEEEEECCCe-EEEEEccCCCCcceeEEecCC-CCCeeEEEECcC--CCcEEEEecCCcEEEEccCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQ-VIVRDYEDSEGKDACILTSDS-QRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~-i~iw~~~~~~~~~~~~~~~~~-~~~v~~l~~spd--~~~l~~~~~dg~i~vw~~~~~ 176 (445)
.+.+++|+|+|+.||+++.+.. ++.|+...........+ .+| ...|++++|+|+ +..+++++.||+|+|||+...
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 4678999999999998875543 45555433333334444 355 568999999984 446667778999999998743
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCcee-eecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTP-IRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~~~-~~~~~ 254 (445)
.....+.. .....+..|. .+|.+++|++++++|++++.+ ++.+.+|+..+++... +..|.
T Consensus 98 ~~~~~~~~-----------------~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 98 KESNSVEV-----------------NVKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp GGGTEEEE-----------------EEEEEEECCS-SCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred cceeeeec-----------------cccccccccc-CcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 33222211 1223345564 799999999999999887653 2589999999887644 45688
Q ss_pred CCeeEEEEcCCCCE-EEEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCC-CeEEEEEcCCceEEEEEeccC
Q 013338 255 GGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 255 ~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~-~~l~~~~~~~~~~~~~~~~~~ 328 (445)
..|.+++|+|++++ +++++.|+.|++||....+. .....+...|.+++|+|++ .+++++ ..++.+..|++.
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~-~~d~~i~iwd~~-- 236 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGK-- 236 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETT--
T ss_pred cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccc-ccccceeeeeec--
Confidence 99999999999875 67899999999999988765 2344677889999999975 566655 344555554432
Q ss_pred CCCccccccCccccccccccCCC-ccceEEeC---CCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCC
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD---ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD 404 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s---p~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 404 (445)
+.+.+..+.+|. .+.++.|+ |+|++|++++.| +.|+|||+++++.+ +.+..|..
T Consensus 237 -----------~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D------~~i~iwd~~~~~~~-----~~~~~~~~ 294 (325)
T d1pgua1 237 -----------SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD------ATIRVWDVTTSKCV-----QKWTLDKQ 294 (325)
T ss_dssp -----------TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCTT
T ss_pred -----------cccccccccccccccccceeeeeccCCCEEEEEeCC------CeEEEEECCCCCEE-----EEEEecCC
Confidence 445566777777 66666666 789999999988 99999999987765 34555444
Q ss_pred C--CCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 405 N--PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 405 ~--v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
. +..++|.+.+. ..+..+-.+|.|.+|++
T Consensus 295 ~~~~~~~~~~~~~~----~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 295 QLGNQQVGVVATGN----GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CGGGCEEEEEEEET----TEEEEEETTSCEEEEET
T ss_pred cccCeEEEEEECCC----CEEEEEECCCEEEEEEC
Confidence 3 44555655432 13445567899999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.5e-30 Score=233.51 Aligned_cols=296 Identities=14% Similarity=0.117 Sum_probs=201.0
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
++|++ +++++||+|+.|++|+|||+. +++.+..+ .+|.+.|++++|+|+ +.|++++.|+.|++|+.........
T Consensus 16 itc~~--~~~~~l~tgs~Dg~i~vWd~~--~~~~~~~l-~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~ 89 (355)
T d1nexb2 16 ITCLQ--FEDNYVITGADDKMIRVYDSI--NKKFLLQL-SGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV 89 (355)
T ss_dssp EEEEE--EETTEEEEEETTTEEEEEETT--TTEEEEEE-ECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEE
T ss_pred EEEEE--ECCCEEEEEeCCCeEEEEECC--CCcEEEEE-ECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccc
Confidence 35554 568899999999999999985 46666665 579999999999997 6899999999999999885432222
Q ss_pred cccccc---------cccc-cccC-CCCCceEEEEeecccC--------------------C--------CceeEEEECC
Q 013338 182 VRSGAA---------SFLG-ALSR-GPGTRWTLVDFLRSQN--------------------G--------EQITALSWGP 222 (445)
Q Consensus 182 ~~~~~~---------~~~~-~~~~-~~~~~~~~~~~~~~~~--------------------~--------~~v~~~~~sp 222 (445)
...... .... .+.. ..++...++..-.... . .......+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (355)
T d1nexb2 90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 169 (355)
T ss_dssp ECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc
Confidence 111100 0000 0111 1222233332111000 0 0011223455
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceee-ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeE
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTG 300 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~ 300 (445)
+++.++++..| +.|++||+.+++.... ..+...+.++.|+|+++++++++.|+.|++||.+++.. ..+..|...|.+
T Consensus 170 ~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~ 248 (355)
T d1nexb2 170 HGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 248 (355)
T ss_dssp ETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred ccceeeeeccc-ceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccc
Confidence 67788888888 6999999888766543 34677889999999999999999999999999999887 567789999999
Q ss_pred EEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceE-EeCCCCCEEEEEEcCCCcccce
Q 013338 301 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI-AWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 301 ~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
++|++ ++|++++ .++.+..|++.+ ....+..|. .+..+ .+++++++|++++ | +
T Consensus 249 ~~~~~--~~l~~~~-~dg~i~iwd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d------~ 303 (355)
T d1nexb2 249 LRLSD--KFLVSAA-ADGSIRGWDAND---------------YSRKFSYHHTNLSAITTFYVSDNILVSGS-E------N 303 (355)
T ss_dssp EEECS--SEEEEEC-TTSEEEEEETTT---------------CCEEEEEECTTCCCCCEEEECSSEEEEEE-T------T
T ss_pred ccccc--ceeeeee-cccccccccccc---------------cceecccccCCceEEEEEcCCCCEEEEEe-C------C
Confidence 99974 5777653 444444444321 122334444 45554 4677888777664 5 8
Q ss_pred EEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 379 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
.|+|||+++++++. ..+.+|.+.|++++|+|+. +++.+..+|.+.++-+.|
T Consensus 304 ~i~vwd~~tg~~~~----~~~~~~~~~V~~v~~~~~~------~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 304 QFNIYNLRSGKLVH----ANILKDADQIWSVNFKGKT------LVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp EEEEEETTTCCBCC----SCTTTTCSEEEEEEEETTE------EEEEEESSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEE----EEecCCCCCEEEEEEcCCe------EEEEEECCCcEEEEEEeC
Confidence 99999999988762 2456799999999998762 466667899877665543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-29 Score=234.71 Aligned_cols=237 Identities=16% Similarity=0.243 Sum_probs=184.3
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|++++|+|+|++|++|+.|+.|++|+.. .++..... .+|...|.+++|++++..+++++.++.+++||....
T Consensus 121 ~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-- 195 (388)
T d1erja_ 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIE--NRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-- 195 (388)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETT--TTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--
T ss_pred CCCEEEEEECCCCCcceeccccccccccccc--cccccccc-ccccccccccccccccccccccccceeeeeeecccc--
Confidence 4569999999999999999999999999985 35544444 579999999999999888988999999999998722
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEEC-CCCCeEEEEEecCCeEEEEEccCCCceee-------
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPI------- 250 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~g~v~vwd~~~~~~~~~------- 250 (445)
........+ ....++.++ +++++|++++.| |.|++||..++.....
T Consensus 196 -----------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~~~~~~~ 249 (388)
T d1erja_ 196 -----------------------QCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLD-RAVRVWDSETGFLVERLDSENES 249 (388)
T ss_dssp -----------------------EEEEEEECS--SCEEEEEECSTTCCEEEEEETT-SCEEEEETTTCCEEEEEC-----
T ss_pred -----------------------ccccccccc--cccccccccCCCCCeEEEEcCC-CeEEEeecccCccceeecccccc
Confidence 122223333 344555555 488999999999 7999999998765332
Q ss_pred -ecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-------------cccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 251 -RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------------PWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 251 -~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
..|...|.+++|+|++++|++++.|+.|++||++++... ....|...|.+++|+|++++|++++.
T Consensus 250 ~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~- 328 (388)
T d1erja_ 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK- 328 (388)
T ss_dssp -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-
T ss_pred ccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-
Confidence 246788999999999999999999999999999876531 22357788999999999999997743
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEE------eCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA------WDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~------~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
++.+..|++ . +.+.+.++.+|. .|.+++ |+|++++||+|+.| |+|+||+++
T Consensus 329 dg~i~vwd~---~----------~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D------g~I~iW~~~ 386 (388)
T d1erja_ 329 DRGVLFWDK---K----------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYK 386 (388)
T ss_dssp TSEEEEEET---T----------TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEE
T ss_pred CCEEEEEEC---C----------CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC------CEEEEEeee
Confidence 344444443 2 556778888888 788876 57899999999988 999999986
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.2e-29 Score=226.82 Aligned_cols=292 Identities=9% Similarity=-0.004 Sum_probs=195.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCC-cEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~-~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|++|+|+|++++||+|+.|++|+|||++............+|..+|.+++|+|++. .+++++.|+.|++|++.....
T Consensus 12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~ 91 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence 4599999999999999999999999999975433333333346999999999999755 466667899999999984433
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-----c-
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-----R- 252 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-----~- 252 (445)
... ...+.........+.++...+++++.+ +.+++||++.+...... .
T Consensus 92 ~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~wd~~~~~~~~~~~~~~~~~ 145 (342)
T d1yfqa_ 92 FQA-------------------------LTNNEANLGICRICKYGDDKLIAASWD-GLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEE-------------------------CBSCCCCSCEEEEEEETTTEEEEEETT-SEEEEECHHHHTTBCEEEEESCSS
T ss_pred ccc-------------------------ccccccccccccccccccccccccccc-cccceeeccccccceeeecccccc
Confidence 222 122222344555666788889999989 69999999765432211 1
Q ss_pred -CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc----ccCCCCCeeEEEECCC-CCeEEEEEcCCceEEEEEec
Q 013338 253 -GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 253 -~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~sp~-~~~l~~~~~~~~~~~~~~~~ 326 (445)
.......+.+.+.+..+++++.|+.|++||++..+... .......+.+..+.+. +..++++ ..++.+..+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~v~~~~ 224 (342)
T d1yfqa_ 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFD 224 (342)
T ss_dssp SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECC
T ss_pred cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee-cCCCeEEEEEec
Confidence 12344566778889999999999999999998876522 2234445666666554 4555544 445555555543
Q ss_pred cCCCCcccccc-C-ccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCC
Q 013338 327 SKPPSLDAHLL-P-VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG 403 (445)
Q Consensus 327 ~~~~~~~~~~~-~-~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 403 (445)
........... . ...........|. .+++++|+|++++||+|+.| |.|++||+++++.+. .+.. .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~D------g~v~vWD~~~~~~l~-----~~~~-~ 292 (342)
T d1yfqa_ 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD------GIISCWNLQTRKKIK-----NFAK-F 292 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEEE-----ECCC-C
T ss_pred CCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCC------CEEEEEECCCCcEEE-----EecC-C
Confidence 32211110000 0 0011122233455 78999999999999999988 999999999876652 3332 2
Q ss_pred CCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 404 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 404 ~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
..+..++|+|+|++ |+++.+++.+..+
T Consensus 293 ~~~~~~~~s~~~~~-----l~~a~sdd~~~~~ 319 (342)
T d1yfqa_ 293 NEDSVVKIACSDNI-----LCLATSDDTFKTN 319 (342)
T ss_dssp SSSEEEEEEECSSE-----EEEEEECTHHHHC
T ss_pred CCCEEEEEEeCCCE-----EEEEEcCCcEEEe
Confidence 35567899999874 7777777655433
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-28 Score=222.54 Aligned_cols=309 Identities=13% Similarity=0.111 Sum_probs=205.2
Q ss_pred cccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE 151 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~ 151 (445)
....+|+||... |.+ +++++|++||+|+.|++|+|||+. +++.+..+ .+|...|.+++
T Consensus 7 ~~~~~l~GH~~~------------------V~s-~~~~~g~~l~sgs~Dg~i~vWd~~--~~~~~~~~-~~h~~~V~~v~ 64 (342)
T d2ovrb2 7 KSPKVLKGHDDH------------------VIT-CLQFCGNRIVSGSDDNTLKVWSAV--TGKCLRTL-VGHTGGVWSSQ 64 (342)
T ss_dssp CCCEEEECSTTS------------------CEE-EEEEETTEEEEEETTSCEEEEETT--TCCEEEEC-CCCSSCEEEEE
T ss_pred CcCEEECCcCCc------------------eEE-EEEECCCEEEEEeCCCeEEEEECC--CCCEEEEE-eCCCCCEEEEE
Confidence 345668888543 544 366789999999999999999985 46666655 57999999999
Q ss_pred ECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc-------cccccCCCCCceEEE--------EeecccCCCcee
Q 013338 152 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF-------LGALSRGPGTRWTLV--------DFLRSQNGEQIT 216 (445)
Q Consensus 152 ~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~~~v~ 216 (445)
|+|+ .+++++.|+.+++|+................. ........+....+. ..+... ...
T Consensus 65 ~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~ 139 (342)
T d2ovrb2 65 MRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH---VAA 139 (342)
T ss_dssp EETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC---SSC
T ss_pred eCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecc---ccc
Confidence 9975 88889999999999987433221111110000 000000011111111 111111 112
Q ss_pred EEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCC
Q 013338 217 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSST 294 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~ 294 (445)
...+.+....++.++.+ |.|++||........ +..|...+. .+++++.+|++++.||.|++||++.++. ..+..|
T Consensus 140 ~~~~~~~~~~~~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~ 216 (342)
T d2ovrb2 140 VRCVQYDGRRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 216 (342)
T ss_dssp EEEEEECSSCEEEEETT-SCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred ceeeccccceeeeecCC-CeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence 23344566788888888 799999998876644 334444444 4455789999999999999999999887 556678
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc---CCC-ccceEEeCCCCCEEEEEEc
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---GSQ-GIEKIAWDASGERLAVSYK 370 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~v~~~~~sp~g~~l~~~s~ 370 (445)
...+.++++++ +++++++ .++.+..|++.. .+....+. .|. .+.++.+ +++++++++.
T Consensus 217 ~~~v~~~~~~~--~~l~s~s-~d~~i~iwd~~~-------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~ 278 (342)
T d2ovrb2 217 QSLTSGMELKD--NILVSGN-ADSTVKIWDIKT-------------GQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSD 278 (342)
T ss_dssp CSCEEEEEEET--TEEEEEE-TTSCEEEEETTT-------------CCEEEEECSTTSCSSCEEEEEE--CSSEEEEEET
T ss_pred ccceeEEecCC--CEEEEEc-CCCEEEEEeccc-------------ccccccccccceeeeceeeccc--CCCeeEEEcC
Confidence 88888887764 5777654 445555555432 12222232 333 5566665 4579999998
Q ss_pred CCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCe----eeEeeeeee
Q 013338 371 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG----FCCTYPLIF 439 (445)
Q Consensus 371 d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G----~v~~~~~~~ 439 (445)
| |+|++||+++++.+.........+|...|++++|+|++. ++++|..+| +|.+++|..
T Consensus 279 D------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~-----~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 279 D------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-----VCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp T------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-----EEEEECSSSSSCCEEEEEECCC
T ss_pred C------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC-----EEEEEeCCCCCeeEEEEEeCCC
Confidence 8 999999999988764322222346788899999999976 588988888 588888754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.6e-28 Score=225.82 Aligned_cols=285 Identities=15% Similarity=0.139 Sum_probs=188.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcc---eeEEecCCCCCeeEEEE------CcC-CCcEEEEecCCcEE
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKD---ACILTSDSQRDVKVLEW------RPN-GGRSLSVGCKGGIC 169 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~l~~------spd-~~~l~~~~~dg~i~ 169 (445)
..|.++++++ ++|++++.|++|+||+....+... .......|...+..+.. +.. +..+++++.||.|+
T Consensus 15 ~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~ 92 (393)
T d1sq9a_ 15 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 92 (393)
T ss_dssp SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred CccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEE
Confidence 4688998864 689999999999999976433211 11111234444333322 222 12344667799999
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEee--cccCCCceeEEEECCC-----CCeEEEEEecCCeEEEEEc
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDV 242 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~-----~~~l~~~~~d~g~v~vwd~ 242 (445)
+|++............ ....+ ..+ ...+..++|.++ +.++++++.| |.+++|++
T Consensus 93 ~w~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~i~vw~~ 153 (393)
T d1sq9a_ 93 FYRITREDETKKVIFE-----------------KLDLLDSDMK-KHSFWALKWGASNDRLLSHRLVATDVK-GTTYIWKF 153 (393)
T ss_dssp EEEEEECTTTCCEEEE-----------------EECCSCTTGG-GSCEEEEEEECCC----CEEEEEEETT-SCEEEEEE
T ss_pred EEEccCCCceeeeecc-----------------ccceeeeccC-CCceEEEEEecCCCcccccEEEEEcCC-CcEEEEEe
Confidence 9998744332222111 00001 112 245777777764 4678888888 79999998
Q ss_pred cCCCc------------e-------eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-------cccCCCC
Q 013338 243 AQGLG------------T-------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTSG 296 (445)
Q Consensus 243 ~~~~~------------~-------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~~ 296 (445)
..... . ....+...+.+++|+|++ +|++|+.|++|++||+.+++.. .+..|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 64311 0 011234568899999997 8899999999999999987652 3457899
Q ss_pred CeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc---CccccccccccCCC-ccceEEeCCCCCEEEEEEcCC
Q 013338 297 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL---PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 297 ~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~ 372 (445)
.|++++|+|+|++|++++. +...+.+++|+.......... .........+.+|. .|++++|+||+++|++++.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~-D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D- 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD- 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT-
T ss_pred eEEEcccccccceeeeecC-CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC-
Confidence 9999999999999997754 344567777765432211111 11223344566888 89999999999999999998
Q ss_pred CcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCC----ceeEeecCCCC
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK----PVAFSFHDKFK 418 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~----~v~~spdg~~~ 418 (445)
++|+|||+++++++ ..+.+|.+.|. .++|+|+|...
T Consensus 311 -----~~v~vWd~~~g~~~-----~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 311 -----GKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp -----SEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred -----CEEEEEECCCCCEE-----EEECCcCCcccCCccEEEECCCCCEE
Confidence 99999999988665 57889988775 47888888753
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=7.1e-28 Score=215.61 Aligned_cols=236 Identities=15% Similarity=0.270 Sum_probs=196.0
Q ss_pred cCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
...|.+++|+|++.+++++..++.+.+|+... .+. ......|...+.++.|+|++..+++++.|+.+++|++....
T Consensus 59 ~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~- 134 (317)
T d1vyhc1 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY- 134 (317)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCE-EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-
T ss_pred CCcEEEEeeecccccccccccccccccccccc--ccc-ccccccccccceeeeccCCCceEEeeccCcceeEeecccce-
Confidence 34699999999999999999999999999753 332 33335789999999999999999999999999999998322
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCe
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL 257 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v 257 (445)
....+.+|. ..+.+++|+|++++|++++.| |.|++|++.+++... +..+...+
T Consensus 135 ------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~~~i 188 (317)
T d1vyhc1 135 ------------------------CVKTFTGHR-EWVRMVRPNQDGTLIASCSND-QTVRVWVVATKECKAELREHRHVV 188 (317)
T ss_dssp ------------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred ------------------------eeeEEccCC-CcceeeecccCCCEEEEEeCC-CeEEEEeeccceeeEEEecCCCCc
Confidence 344566675 789999999999999999999 799999999887654 45677888
Q ss_pred eEEEEcCCC--------------------CEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcC
Q 013338 258 SILKWSPTG--------------------DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG 316 (445)
Q Consensus 258 ~~~~~sp~g--------------------~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~ 316 (445)
.+++|+|++ ..+++++.|+.|++||+++++. ..+..|...|.+++|+|++++|++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 267 (317)
T d1vyhc1 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD- 267 (317)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-
T ss_pred eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC-
Confidence 888888754 4688999999999999999887 567789999999999999999997743
Q ss_pred CceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 317 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
++ .+++|+.. +.+.+..+.+|. .|++++|+|++++|++++.| ++|+|||
T Consensus 268 dg---~i~iwd~~----------~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D------g~i~iWd 317 (317)
T d1vyhc1 268 DK---TLRVWDYK----------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWE 317 (317)
T ss_dssp TT---EEEEECCT----------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC
T ss_pred CC---eEEEEECC----------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEeC
Confidence 34 44555432 456677888888 89999999999999999988 9999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.7e-28 Score=216.49 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=202.3
Q ss_pred cccccccccccccccccccCCCcCCcCcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLE 151 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~ 151 (445)
.++.+|+||. .+|++++|+| |++|+.||+|++|++.. ...+|...|.+++
T Consensus 4 ~~i~~l~gH~------------------~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~--------~~~~h~~~V~~~~ 53 (287)
T d1pgua2 4 EVLKTISGHN------------------KGITALTVNP----LISGSYDGRIMEWSSSS--------MHQDHSNLIVSLD 53 (287)
T ss_dssp EEEEEECCCS------------------SCEEEEETTT----TEEEETTSCEEETTTTE--------EECCCCSCEEEEE
T ss_pred ceeEEECCCC------------------CceEEEEECc----EEEEeCCCeEEEEECCC--------CCCCCCCCEEEEE
Confidence 4566788885 4599999988 89999999999999742 1247999999999
Q ss_pred ECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE
Q 013338 152 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS 231 (445)
Q Consensus 152 ~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 231 (445)
|+++ ..+++++.|+++++|++... .. ...+..+++++++..+++++
T Consensus 54 ~~~~-~~~~s~s~D~~v~~w~~~~~--------------------------------~~-~~~~~~~~~~~~~~~~~~~~ 99 (287)
T d1pgua2 54 NSKA-QEYSSISWDDTLKVNGITKH--------------------------------EF-GSQPKVASANNDGFTAVLTN 99 (287)
T ss_dssp CCST-TCCEEEETTTEEEETTEEEE--------------------------------EC-SSCEEEEEECSSSEEEEEET
T ss_pred ecCC-CeEEEEeecccccccccccc--------------------------------cc-ccceeeeeeccCCceEEEee
Confidence 9987 68899999999999998610 11 24577889999987777654
Q ss_pred ecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCC-eEEEEeCCCCCc--ccccCCCCCeeEEEECCCCC
Q 013338 232 YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGR 308 (445)
Q Consensus 232 ~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~ 308 (445)
+ +.+.+|+..+++..........+ .++++++..+++++.++ .+++|++...+. .....+...+++++|+|+++
T Consensus 100 -~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 175 (287)
T d1pgua2 100 -D-DDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175 (287)
T ss_dssp -T-SEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred -c-ccceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc
Confidence 4 37899999888776665555444 45677888888887765 799999976554 22335777899999999999
Q ss_pred eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCC----------CCEEEEEEcCCCcccc
Q 013338 309 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS----------GERLAVSYKGGDDIYK 377 (445)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~----------g~~l~~~s~d~~d~~d 377 (445)
+|+++.. ++.+..|++.+ .......+.+|. .|.+++|+|+ +.+|++|+.|
T Consensus 176 ~l~~g~~-dg~i~i~d~~~------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D------ 236 (287)
T d1pgua2 176 YIAAGDV-MGKILLYDLQS------------REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------ 236 (287)
T ss_dssp EEEEEET-TSCEEEEETTT------------TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------
T ss_pred ccccccc-cccccceeecc------------cccccccccccccccceeeecccccccccccCCCCeeEeecCC------
Confidence 9997743 34455554321 111123456777 8999999875 4689999988
Q ss_pred eEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 378 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 378 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++|++||++++... +..+.+|...|++++|+|+++ +++.+ +||.|.+|++.
T Consensus 237 ~~i~iw~~~~~~~~----~~~~~~h~~~V~~v~~~~~~~-----l~s~g-~D~~v~iW~i~ 287 (287)
T d1pgua2 237 TNIFIYSVKRPMKI----IKALNAHKDGVNNLLWETPST-----LVSSG-ADACIKRWNVV 287 (287)
T ss_dssp SCEEEEESSCTTCC----EEETTSSTTCEEEEEEEETTE-----EEEEE-TTSCEEEEEEC
T ss_pred CeEEEEECCCCCeE----EEEeCCCCCCeEEEEECCCCE-----EEEEE-CCCeEEEEEEC
Confidence 99999999764322 346678999999999999864 45555 68999999873
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.9e-28 Score=218.87 Aligned_cols=239 Identities=11% Similarity=0.075 Sum_probs=175.5
Q ss_pred CCeeEEEEcc--CCCEEEEEECCCeEEEEEccCCCCccee-----EEecCCCCCeeEEEECcCCCcEEEEec--CCcEEE
Q 013338 100 VDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSEGKDAC-----ILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICI 170 (445)
Q Consensus 100 ~~v~~~~~sp--~g~~la~~~~d~~i~iw~~~~~~~~~~~-----~~~~~~~~~v~~l~~spd~~~l~~~~~--dg~i~v 170 (445)
..|++++|+| +|.+||+|+.||+|+||++......... .....|.++|.+++|++++..+++++. ++.+++
T Consensus 64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence 4699999998 5789999999999999998642211111 112358889999999999888888775 478999
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe-EEEEEecCCeEEEEEccCCCcee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP 249 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~g~v~vwd~~~~~~~~ 249 (445)
|+.+.. .++..+.+|. ..|.+++|+|++.+ +++++.| |.+++||+...+...
T Consensus 144 ~~~~~~-------------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d-~~v~~~d~~~~~~~~ 196 (325)
T d1pgua1 144 ISWDSG-------------------------NSLGEVSGHS-QRINACHLKQSRPMRSMTVGDD-GSVVFYQGPPFKFSA 196 (325)
T ss_dssp EETTTC-------------------------CEEEECCSCS-SCEEEEEECSSSSCEEEEEETT-TEEEEEETTTBEEEE
T ss_pred Eeeccc-------------------------ccceeeeecc-cccccccccccccceEEEeecc-cccccccccccccce
Confidence 988732 2445567775 89999999998876 5667777 799999998765432
Q ss_pred e----ecCCCCeeEEEEcCC-CCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEEC---CCCCeEEEEEcCCceE
Q 013338 250 I----RRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD---PEGRMILLAFAGSLTL 320 (445)
Q Consensus 250 ~----~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~s---p~~~~l~~~~~~~~~~ 320 (445)
. ..+...|.+++|+|+ +++|++++.|+.|++||+++++. ..+..|...+.++.|+ |++++|++++ .++.
T Consensus 197 ~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~- 274 (325)
T d1pgua1 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADAT- 274 (325)
T ss_dssp EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSE-
T ss_pred ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCe-
Confidence 2 245678999999997 68899999999999999999887 5566677766665555 6888888764 3344
Q ss_pred EEEEeccCCCCccccccCccccccccccCCC---ccceEEeCCC-CCEEEEEEcCCCcccceEEEEEEc
Q 013338 321 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~-g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
+++|+.. ..+.+..+..|. .+..+++.+. +.+|++++.| |.|++||+
T Consensus 275 --i~iwd~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------g~i~vwdl 325 (325)
T d1pgua1 275 --IRVWDVT----------TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD------GTLNFYEL 325 (325)
T ss_dssp --EEEEETT----------TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT------SCEEEEET
T ss_pred --EEEEECC----------CCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC------CEEEEEEC
Confidence 4445432 344455555444 3455555443 3478899888 99999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.3e-26 Score=206.80 Aligned_cols=235 Identities=10% Similarity=0.165 Sum_probs=174.3
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|++++|+|+|+++ +++.|+.+++|+...............+...+.+++|+|++ .+++++.++.+++|+..
T Consensus 56 ~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~~~~~i~~~~~~----- 128 (299)
T d1nr0a2 56 TMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAACYKHIAIYSHG----- 128 (299)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEEESSEEEEEETT-----
T ss_pred CcEEEEEeeccceee-cccceeeEEEeccCCcccccccccccccccccccccccccc-ccccccccccccccccc-----
Confidence 469999999999765 56789999999986432222222233577889999999995 45666677899999865
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecCCCCe
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGL 257 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~~~v 257 (445)
....... ...+.+++|+|++++|++++.| |.|++||+++++.. ....|...|
T Consensus 129 ----------------------~~~~~~~---~~~~~~~~~s~~~~~l~~g~~d-g~i~~~d~~~~~~~~~~~~~~~~~i 182 (299)
T d1nr0a2 129 ----------------------KLTEVPI---SYNSSCVALSNDKQFVAVGGQD-SKVHVYKLSGASVSEVKTIVHPAEI 182 (299)
T ss_dssp ----------------------EEEEEEC---SSCEEEEEECTTSCEEEEEETT-SEEEEEEEETTEEEEEEEEECSSCE
T ss_pred ----------------------ccccccc---cccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 1111111 2467899999999999999999 79999999887654 345678999
Q ss_pred eEEEEcCCCCEEEEEecCCeEEEEeCCCCCc----ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 258 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
.+++|+|++++|++++.|+.|++||+.++.. ..+..|...|++++|+|++++|++++. ++.+..|++...
T Consensus 183 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~-dg~i~iwd~~~~----- 256 (299)
T d1nr0a2 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKP----- 256 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCT-----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC-CCEEEEEECCCC-----
Confidence 9999999999999999999999999987654 344578889999999999999997743 345555554321
Q ss_pred ccccCccccccccccCCC--ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 334 AHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
....+.....|. .+..+.| +++++|++++.| ++|++||+.
T Consensus 257 ------~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D------~~i~iWdl~ 298 (299)
T d1nr0a2 257 ------SDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD------SNIKFWNVP 298 (299)
T ss_dssp ------TSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT------SCEEEEECC
T ss_pred ------CcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC------CEEEEEecc
Confidence 111222223333 4666655 667899999988 999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=5.4e-26 Score=205.84 Aligned_cols=265 Identities=14% Similarity=0.191 Sum_probs=205.4
Q ss_pred cccccccccccccccccccCCCcCCcCcC------------------------CeeEEEEccCCCEEEEEECCCeEEEEE
Q 013338 72 GLFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQVIVRD 127 (445)
Q Consensus 72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~d~~i~iw~ 127 (445)
....+|+||.+.+....+.|....+..+. .|.+++|+|+++++++|+.|+.+++|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 34567899999888888887765554321 489999999999999999999999999
Q ss_pred ccCCCCccee-EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEe
Q 013338 128 YEDSEGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF 206 (445)
Q Consensus 128 ~~~~~~~~~~-~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (445)
.......... ....+|...........+ ..+.....+.....+..... .....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~ 179 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETG-------------------------QQTTT 179 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTT-------------------------EEEEE
T ss_pred ccccccccccceecccccccccccccccc-cccccccccccccccccccc-------------------------ccccc
Confidence 8653322222 222456666666666555 67777888888888876621 12222
Q ss_pred ecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCC
Q 013338 207 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 285 (445)
Q Consensus 207 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~ 285 (445)
...+ ...+....+.+.+.++++++.| |.|++||+++++... +..|...|++++|+|++++|++++.|+.|++||++.
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~~~~~d-~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~ 257 (340)
T d1tbga_ 180 FTGH-TGDVMSLSLAPDTRLFVSGACD-ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp EECC-SSCEEEEEECTTSSEEEEEETT-TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccc-ceeEeeeccccccceeEEeecC-ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence 3333 3688999999999999999999 799999999887754 456789999999999999999999999999999998
Q ss_pred CCcc---cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCC
Q 013338 286 WTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS 361 (445)
Q Consensus 286 ~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~ 361 (445)
.+.. ....+...+.+++|+|++++|++++. ++.+..|++. +.+.+..+.+|. .|++++|+|+
T Consensus 258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~-------------~~~~~~~~~~H~~~V~~l~~s~d 323 (340)
T d1tbga_ 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDAL-------------KADRAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETT-------------TCCEEEEECCCSSCEEEEEECTT
T ss_pred cccccccccccccCceEEEEECCCCCEEEEEEC-CCEEEEEECC-------------CCcEEEEEcCCCCCEEEEEEeCC
Confidence 7763 23466778999999999999997744 3444444432 556778888998 8999999999
Q ss_pred CCEEEEEEcCCCcccceEEEEEE
Q 013338 362 GERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 362 g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
+++|++|+.| |.|+|||
T Consensus 324 ~~~l~s~s~D------g~v~iWd 340 (340)
T d1tbga_ 324 GMAVATGSWD------SFLKIWN 340 (340)
T ss_dssp SSCEEEEETT------SCEEEEC
T ss_pred CCEEEEEccC------CEEEEeC
Confidence 9999999988 9999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=4.2e-27 Score=215.25 Aligned_cols=287 Identities=12% Similarity=0.053 Sum_probs=194.6
Q ss_pred eEEEEcc-CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCCc
Q 013338 103 QGVSWHQ-HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNA 179 (445)
Q Consensus 103 ~~~~~sp-~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~~ 179 (445)
.+-.||| ||+++|+++ +|.|.+|+++ ++... . ..|...|++++|+|||+.|++++.+ ..|++||...+.
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~--~~~~~-~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-- 77 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVS--GTYVL-K--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-- 77 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTT--SSBEE-E--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECC--CCcEE-E--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--
Confidence 3567999 999999876 5799999984 34332 2 3589999999999999888887765 378999987321
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee-ecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~-~~~~~~v~ 258 (445)
...+..|. ..+.+++|+|+|++|++++.+ +.+++|++.+++.... ..+...+.
T Consensus 78 ------------------------~~~~~~~~-~~v~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (360)
T d1k32a3 78 ------------------------AEKFEENL-GNVFAMGVDRNGKFAVVANDR-FEIMTVDLETGKPTVIERSREAMIT 131 (360)
T ss_dssp ------------------------EEECCCCC-CSEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCC
T ss_pred ------------------------EEEeeCCC-ceEEeeeecccccccceeccc-cccccccccccceeeeeeccccccc
Confidence 12244454 789999999999999999999 6999999998887554 45678899
Q ss_pred EEEEcCCCCEEEEEec----------CCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 259 ILKWSPTGDYFFAAKF----------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
+++|+|+|++|+.+.. ++.+++||+.+++...+..+...+..++|+|+|++|++++.. ..+..+.....
T Consensus 132 ~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~-~~~~~~d~~~~ 210 (360)
T d1k32a3 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR-SLDPSPDRVVL 210 (360)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESC-CCCCEECSSSS
T ss_pred chhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCC-CceEccccccc
Confidence 9999999999986543 446999999998887777888889999999999999976532 22222221110
Q ss_pred CC----------------CccccccCccccc--------------cccccCCC-ccceEEeCCCCCEEEEEEcCCCc---
Q 013338 329 PP----------------SLDAHLLPVDLPD--------------IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD--- 374 (445)
Q Consensus 329 ~~----------------~~~~~~~~~~~~~--------------~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d--- 374 (445)
.. ......+...... +..+.... ....+...+++...+.....+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360)
T d1k32a3 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290 (360)
T ss_dssp CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred ceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeE
Confidence 00 0000000000000 00011111 22334444443333222211110
Q ss_pred ----ccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 375 ----IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 375 ----~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
..++.|++||+.+++.. . |.+.|.+++|||||++ |+++..+|.|.+|++.
T Consensus 291 ~~~~~~~~~i~~~d~~~~~~~------~---~~~~v~~~~~SpDG~~-----l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 291 YQGAPEKGVLLKYDVKTRKVT------E---VKNNLTDLRLSADRKT-----VMVRKDDGKIYTFPLE 344 (360)
T ss_dssp HHCCCCCEEEEEEETTTCCEE------E---EEEEEEEEEECTTSCE-----EEEEETTSCEEEEESS
T ss_pred EEecCCCCEEEEEECCCCeEE------E---ecCCcCEEEECCCCCE-----EEEEECCCeEEEEECC
Confidence 11389999999987653 1 2345789999999986 7788889999999874
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.8e-24 Score=186.23 Aligned_cols=268 Identities=11% Similarity=0.115 Sum_probs=190.5
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|+|++ +||++||+|+.||+|+|||++ +++.+..+ .+|...|++++|+ ++.|++++.|+.|++|++......
T Consensus 16 ~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~--~~~~~~~l-~~H~~~V~~v~~~--~~~l~s~s~D~~i~~~~~~~~~~~ 88 (293)
T d1p22a2 16 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKN--TLECKRIL-TGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEML 88 (293)
T ss_dssp CCEEEEE--CCSSEEEEEESSSCEEEEESS--SCCEEEEE-CCCSSCEEEEECC--SSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCEEEEE--EcCCEEEEEeCCCeEEEEECC--CCcEEEEE-ecCCCCEeeeecc--cceeeccccccccccccccccccc
Confidence 4588765 589999999999999999985 46666666 5799999999885 468889999999999999833221
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce----eeecCCC
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFG 255 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~----~~~~~~~ 255 (445)
.. ...+ ......+.+....++++..+ +.+.+|+....... ....+..
T Consensus 89 ~~-------------------------~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (293)
T d1p22a2 89 NT-------------------------LIHH---CEAVLHLRFNNGMMVTCSKD-RSIAVWDMASPTDITLRRVLVGHRA 139 (293)
T ss_dssp EE-------------------------ECCC---CSCEEEEECCTTEEEEEETT-SCEEEEECSSSSCCEEEEEECCCSS
T ss_pred cc-------------------------cccc---ccccccccccccceeecccc-cceeEeecccccccccccccccccc
Confidence 11 1111 22233444556678888888 69999999876542 2334567
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccc
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA 334 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (445)
.+..+.+. ...+++++.|+.|++||+++++. ..+..+...+..+.++ +.+++++. .++.+..|++.
T Consensus 140 ~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~-------- 206 (293)
T d1p22a2 140 AVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIE-------- 206 (293)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETT--------
T ss_pred ccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEecc--------
Confidence 77777765 56788999999999999999887 4566777778777775 45677654 34445544432
Q ss_pred cccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee----eeeeeeeeeCCCCCCCce
Q 013338 335 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI----SLSLIGFIRGPGDNPKPV 409 (445)
Q Consensus 335 ~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~v~~v 409 (445)
....+..+.++. .+. .+++++.+|++++.| |.|++||+...... ....+..+.+|.+.|+++
T Consensus 207 -----~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v 273 (293)
T d1p22a2 207 -----CGACLRVLEGHEELVR--CIRFDNKRIVSGAYD------GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273 (293)
T ss_dssp -----TCCEEEEECCCSSCEE--EEECCSSEEEEEETT------SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred -----cceeeeeecccceeee--eccccceEEEEEcCC------CEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence 334455555665 454 356788999999988 99999998643211 123356778999999999
Q ss_pred eEeecCCCCCCCeEEEEecCeeeEeee
Q 013338 410 AFSFHDKFKQGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 410 ~~spdg~~~~~~~l~~~~~~G~v~~~~ 436 (445)
+|+ +++ |+.|-.||.|.+|+
T Consensus 274 ~~d--~~~-----l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 274 QFD--EFQ-----IVSSSHDDTILIWD 293 (293)
T ss_dssp EEC--SSC-----EEECCSSSEEEEEC
T ss_pred EEc--CCE-----EEEEecCCEEEEeC
Confidence 984 443 66677899999985
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=3.9e-23 Score=183.67 Aligned_cols=266 Identities=15% Similarity=0.120 Sum_probs=199.2
Q ss_pred EEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccc
Q 013338 115 AFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGAL 193 (445)
Q Consensus 115 a~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 193 (445)
++++.+++|.|||++ +++.+..+. ....+..++|+|||+++++++ .++.|++||+.+.
T Consensus 6 V~~~~~~~v~v~D~~--t~~~~~~i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~----------------- 64 (301)
T d1l0qa2 6 IANSESDNISVIDVT--SNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN----------------- 64 (301)
T ss_dssp EEETTTTEEEEEETT--TTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-----------------
T ss_pred EEECCCCEEEEEECC--CCeEEEEEE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC-----------------
Confidence 456789999999985 466666654 445688999999988886655 5699999999832
Q ss_pred cCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EE
Q 013338 194 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AA 272 (445)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~ 272 (445)
..+..+..+ ..+..++|+++++.+++++.+++.+.+|+..+++......+...+.+++|+|+++.++ ++
T Consensus 65 --------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 134 (301)
T d1l0qa2 65 --------NVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN 134 (301)
T ss_dssp --------EEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE
T ss_pred --------ceeeeeecc--ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeee
Confidence 234445544 4678999999999887777665799999999988877777778889999999999875 55
Q ss_pred ecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCc
Q 013338 273 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG 352 (445)
Q Consensus 273 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (445)
..++.+.+|+..+.+......+...+..+.++|+++.++++.........+... .......+..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 201 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-------------TNSVIDTVKVEAA 201 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-------------TTEEEEEEECSSE
T ss_pred ccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccc-------------ceeeeecccccCC
Confidence 567899999999988765555566788999999999998876655443333321 2222333334446
Q ss_pred cceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeee
Q 013338 353 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC 432 (445)
Q Consensus 353 v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v 432 (445)
+..++|+++++.++++..+..+ +.|++||+.+++... .+.. ...+.+++|||||++ ++..+..+|.|
T Consensus 202 ~~~~~~~~~g~~~~v~~~~~~~---~~v~v~D~~t~~~~~-----~~~~-~~~~~~va~spdg~~----l~va~~~~~~i 268 (301)
T d1l0qa2 202 PSGIAVNPEGTKAYVTNVDKYF---NTVSMIDTGTNKITA-----RIPV-GPDPAGIAVTPDGKK----VYVALSFCNTV 268 (301)
T ss_dssp EEEEEECTTSSEEEEEEECSSC---CEEEEEETTTTEEEE-----EEEC-CSSEEEEEECTTSSE----EEEEETTTTEE
T ss_pred cceeecccccccccccccccee---eeeeeeecCCCeEEE-----EEcC-CCCEEEEEEeCCCCE----EEEEECCCCeE
Confidence 7889999999999887766443 789999999877652 3333 345789999999986 34556678889
Q ss_pred Eeeee
Q 013338 433 CTYPL 437 (445)
Q Consensus 433 ~~~~~ 437 (445)
.+|++
T Consensus 269 ~v~D~ 273 (301)
T d1l0qa2 269 SVIDT 273 (301)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=1.2e-23 Score=197.17 Aligned_cols=298 Identities=14% Similarity=0.094 Sum_probs=196.9
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL 190 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 190 (445)
+.++++++.||+|+|||+. +++.+..+.. | ..+..++|||||+++++++.|+++++||+.+.+.....
T Consensus 32 ~~~~V~~~~dg~v~vwD~~--t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-------- 99 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGD--SKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA-------- 99 (426)
T ss_dssp GEEEEEETTTTEEEEEETT--TCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE--------
T ss_pred eEEEEEEcCCCEEEEEECC--CCcEEEEEeC-C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE--------
Confidence 3456778899999999995 5777777653 3 46999999999999998889999999999844322110
Q ss_pred ccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec------------CCCCee
Q 013338 191 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------------GFGGLS 258 (445)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~------------~~~~v~ 258 (445)
.+....+|. ..+.+++|+|||+++++++...+.+++||..++....... +.....
T Consensus 100 ------------~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (426)
T d1hzua2 100 ------------EIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 166 (426)
T ss_dssp ------------EEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred ------------EEeCCCCCc-ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCcee
Confidence 112223343 5667788899999987776444799999999887654332 233456
Q ss_pred EEEEcCCCCEEEEEec-CCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCC----
Q 013338 259 ILKWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---- 331 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~---- 331 (445)
.+.+++++..++.... .+.+.+++...... .....+...+..+.|+|++++++++.........+........
T Consensus 167 ~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 246 (426)
T d1hzua2 167 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246 (426)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence 6777778777665444 45677777666553 2334677788999999999999988766655555544321100
Q ss_pred --------c-------------------ccc--c--------cCccccccccccCCC-ccceEEeCCCCCEEEEEEcCC-
Q 013338 332 --------L-------------------DAH--L--------LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG- 372 (445)
Q Consensus 332 --------~-------------------~~~--~--------~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~- 372 (445)
. +.. . .....+....+.+|. .+..++|+|||++|++...-+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~ 326 (426)
T d1hzua2 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNP 326 (426)
T ss_dssp CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCS
T ss_pred cCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCC
Confidence 0 000 0 001123445677888 899999999999999643211
Q ss_pred CcccceEEEEEEccCCCeeee-eeeee---eeCCCCCCCceeEeecCCCCCCCeEEEEe----cCeeeEeeee
Q 013338 373 DDIYKGLIAIYDARRTPLISL-SLIGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYPL 437 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~-~~~~~---~~~~~~~v~~v~~spdg~~~~~~~l~~~~----~~G~v~~~~~ 437 (445)
+...|++|+|||+++++.... .+... +..|...|.+++|||||++ ++..+| .+|.|.+|+.
T Consensus 327 s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~----i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp SHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE----EEEEECCCTTSCCEEEEEET
T ss_pred CcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE----EEEEEecCCCCCCeEEEEEC
Confidence 111238999999998775421 11111 2345566888999999986 233334 4677887764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=4.5e-24 Score=194.83 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=128.8
Q ss_pred cCCeeEEEEccCCCEEEEEECCC--eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFISGST--QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~ 176 (445)
...|++++|+|||++|++++.+. .+++|+++. ++. ..+ ..|...|.+++|+||++++++++.++.+++|++...
T Consensus 42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~--~~~-~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 117 (360)
T d1k32a3 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKA-EKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 117 (360)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT--CCE-EEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC--CcE-EEe-eCCCceEEeeeecccccccceecccccccccccccc
Confidence 45699999999999999877554 789999853 433 333 469999999999999999999999999999999732
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC---------CeEEEEEccCCCc
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---------SSFTIWDVAQGLG 247 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------g~v~vwd~~~~~~ 247 (445)
. +...+..+. ..+.+++|+|+|++|+++..+. +.+++||+.+++.
T Consensus 118 ~-------------------------~~~~~~~~~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 171 (360)
T d1k32a3 118 K-------------------------PTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 171 (360)
T ss_dssp C-------------------------EEEEEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred c-------------------------eeeeeeccc-ccccchhhccceeeeeeeccccccceeeccccceeeeccccCce
Confidence 2 233344554 7889999999999999765432 3689999999888
Q ss_pred eeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCC
Q 013338 248 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 286 (445)
Q Consensus 248 ~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~ 286 (445)
..+..+...+..++|+|+|++|++++.++.+.+||....
T Consensus 172 ~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred eeecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 888888888999999999999999999999999987654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.7e-23 Score=186.03 Aligned_cols=256 Identities=13% Similarity=0.149 Sum_probs=169.7
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-CCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 178 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~ 178 (445)
..|++++|+|+ .+|++|+.|+.|++|++.. ......... .+........+++++..+++++.|+.|++|++.....
T Consensus 54 ~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~ 130 (355)
T d1nexb2 54 GGVWALKYAHG-GILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130 (355)
T ss_dssp SCEEEEEEETT-TEEEEEETTCCEEEEETTT--TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC---
T ss_pred CCEEEEEEcCC-CEEEEEecccccccccccc--cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce
Confidence 45999999986 5789999999999999854 333333222 2334456677788877888889999999999874432
Q ss_pred cccccccccc----------------------c------ccc--ccCCCCCc--------eEEEEeecccCCCceeEEEE
Q 013338 179 AASVRSGAAS----------------------F------LGA--LSRGPGTR--------WTLVDFLRSQNGEQITALSW 220 (445)
Q Consensus 179 ~~~~~~~~~~----------------------~------~~~--~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~ 220 (445)
.......... . ... .....+.. ........++. ..+.++.|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 209 (355)
T d1nexb2 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIY 209 (355)
T ss_dssp --------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEE
T ss_pred eccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc-cccccccc
Confidence 2111000000 0 000 00001111 12333445554 68889999
Q ss_pred CCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCee
Q 013338 221 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT 299 (445)
Q Consensus 221 sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~ 299 (445)
+|+++.+++++.| |.|++||+.++.... +..|...|.+++|+ +++|++++.||.|++||+++.... +..|...+.
T Consensus 210 ~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~ 285 (355)
T d1nexb2 210 DHERKRCISASMD-TTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLS 285 (355)
T ss_dssp ETTTTEEEEEETT-SCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE-EEEECTTCC
T ss_pred cccceeeeccccc-ceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee-cccccCCce
Confidence 9999999999999 799999999887754 55678899999996 479999999999999999887643 334444554
Q ss_pred EE-EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccc-cccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 300 GA-TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 300 ~~-~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
++ .+++++++++++. ++.+..|++. +++.+. .+.+|. .|.+++|+|+ .++++++.|
T Consensus 286 ~~~~~~~~~~~l~~g~--d~~i~vwd~~-------------tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d----- 344 (355)
T d1nexb2 286 AITTFYVSDNILVSGS--ENQFNIYNLR-------------SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD----- 344 (355)
T ss_dssp CCCEEEECSSEEEEEE--TTEEEEEETT-------------TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS-----
T ss_pred EEEEEcCCCCEEEEEe--CCEEEEEECC-------------CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC-----
Confidence 44 5677887777653 3444444432 334442 456677 8999999987 467777777
Q ss_pred ceEEEEEEc
Q 013338 377 KGLIAIYDA 385 (445)
Q Consensus 377 d~~i~vwd~ 385 (445)
|.++||.+
T Consensus 345 -g~~~l~~~ 352 (355)
T d1nexb2 345 -GQSFLEIL 352 (355)
T ss_dssp -SCEEEEEE
T ss_pred -CcEEEEEE
Confidence 77666544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.5e-23 Score=194.35 Aligned_cols=261 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCce--
Q 013338 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI-- 215 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-- 215 (445)
....+|...|+++++++ +++++++.|++|+|||............. .. ...|. ..+
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~------------------~~-~~~~~-~~~~~ 65 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS------------------YS-HFVHK-SGLHH 65 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE------------------EE-EECCT-TCEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccccee------------------Ee-eeecc-CCceE
Confidence 34468999999999976 58999999999999997744332211110 00 11111 121
Q ss_pred ----eEEEECC-CCCeEEEEEecCCeEEEEEccCCCcee-e----------ecCCCCeeEEEEcCC-----CCEEEEEec
Q 013338 216 ----TALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-I----------RRGFGGLSILKWSPT-----GDYFFAAKF 274 (445)
Q Consensus 216 ----~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~~~~~~-~----------~~~~~~v~~~~~sp~-----g~~l~~~~~ 274 (445)
..+..+. ++.++++++.| |.|++|++....... . ..+...+..++|.++ +.++++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~s~~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (393)
T d1sq9a_ 66 VDVLQAIERDAFELCLVATTSFS-GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144 (393)
T ss_dssp EEEEEEEETTTEEEEEEEEEETT-SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred eeeEeeeccCCCCCcEEEEEeCC-CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcC
Confidence 2222222 34567788888 799999987553311 0 113356778888775 467899999
Q ss_pred CCeEEEEeCCCCCc-------------------ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc
Q 013338 275 DGTFYLWETNTWTS-------------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH 335 (445)
Q Consensus 275 dg~v~iwd~~~~~~-------------------~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (445)
||.+++|++..... .....+...+++++|+|++ +|+++ +.++.+..|++.... ...
T Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasg-s~Dg~i~iwd~~~~~---~~~ 219 (393)
T d1sq9a_ 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG-FNNGTVQISELSTLR---PLY 219 (393)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE-CTTSEEEEEETTTTE---EEE
T ss_pred CCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEE-eCCCcEEEEeecccc---ccc
Confidence 99999999864321 1112445568899999997 66654 445555555543211 000
Q ss_pred ccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeee--------eeeeeeeCCCCCC
Q 013338 336 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL--------SLIGFIRGPGDNP 406 (445)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~--------~~~~~~~~~~~~v 406 (445)
..+....+.+|. .|++++|+|||++|++|+.|+.. +.|++||+++++.+.. .....+.+|...|
T Consensus 220 ----~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~---~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V 292 (393)
T d1sq9a_ 220 ----NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF---GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV 292 (393)
T ss_dssp ----EEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE---EEEEEEETTTCCEEEEECBC--------CCBSBSSCE
T ss_pred ----ccccccccccccceEEEcccccccceeeeecCCCCc---ceeeecccccceeeeeeccccccccceeeeecccCce
Confidence 223344566788 89999999999999999987443 6799999998876532 1122345899999
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
++++|+|||++ |+.|-.||.|.+|++.
T Consensus 293 ~~l~fspd~~~-----l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 293 MSLSFNDSGET-----LCSAGWDGKLRFWDVK 319 (393)
T ss_dssp EEEEECSSSSE-----EEEEETTSEEEEEETT
T ss_pred eeeccCCCCCe-----eEEECCCCEEEEEECC
Confidence 99999999875 7777789999999863
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.6e-22 Score=178.73 Aligned_cols=227 Identities=12% Similarity=0.164 Sum_probs=167.6
Q ss_pred CcCCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCC
Q 013338 98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 177 (445)
Q Consensus 98 ~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~ 177 (445)
+...|.++++++++ .+++++.|+++++|++.. . .....+..++++++ ..+++.+.++.+.+|+.....
T Consensus 45 h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~--------~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 112 (287)
T d1pgua2 45 HSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITK--------H--EFGSQPKVASANND-GFTAVLTNDDDLLILQSFTGD 112 (287)
T ss_dssp CCSCEEEEECCSTT-CCEEEETTTEEEETTEEE--------E--ECSSCEEEEEECSS-SEEEEEETTSEEEEEETTTCC
T ss_pred CCCCEEEEEecCCC-eEEEEeeccccccccccc--------c--ccccceeeeeeccC-CceEEEeecccceeeecccee
Confidence 34579999999765 568899999999998742 1 13445778899998 566667777788888876322
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee--ecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~--~~~~~ 255 (445)
....+..+ .. ..++++++..+++++.+++.+++|++........ ..+..
T Consensus 113 -------------------------~~~~~~~~--~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (287)
T d1pgua2 113 -------------------------IIKSVRLN--SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163 (287)
T ss_dssp -------------------------EEEEEECS--SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred -------------------------eeeecccc--ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC
Confidence 22223222 23 3456778888888888755899999876544332 23567
Q ss_pred CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc--ccccCCCCCeeEEEECCCC----------CeEEEEEcCCceEEEE
Q 013338 256 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEG----------RMILLAFAGSLTLGSI 323 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~----------~~l~~~~~~~~~~~~~ 323 (445)
.+++++|+|++++|++++.||.|++||+.+++. ..+..|...|.+++|+|.+ .+++++ +.++.+..|
T Consensus 164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg-s~D~~i~iw 242 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIY 242 (287)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE-ETTSCEEEE
T ss_pred ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee-cCCCeEEEE
Confidence 899999999999999999999999999998876 3466889999999998754 466655 344555555
Q ss_pred EeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
++.. ..+.+..+.+|. .|++++|+|++ .|++++.| ++|++|++
T Consensus 243 ~~~~------------~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D------~~v~iW~i 286 (287)
T d1pgua2 243 SVKR------------PMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD------ACIKRWNV 286 (287)
T ss_dssp ESSC------------TTCCEEETTSSTTCEEEEEEEETT-EEEEEETT------SCEEEEEE
T ss_pred ECCC------------CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC------CeEEEEEE
Confidence 5421 234566677888 89999999987 57888887 99999996
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=7.7e-21 Score=171.30 Aligned_cols=291 Identities=11% Similarity=0.098 Sum_probs=191.4
Q ss_pred EEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCcccccccccccccc
Q 013338 114 VAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA 192 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 192 (445)
+++++.|++|+||+++.. +.........|.+.+..|+|+|||++|++++. ++.|++|++........+
T Consensus 7 ~v~~~~~~~I~v~~~~~~-~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~---------- 75 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHE-GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF---------- 75 (333)
T ss_dssp EEEEGGGTEEEEEEECTT-SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE----------
T ss_pred EEECCCCCcEEEEEEcCC-CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE----------
Confidence 466779999999999743 32222222358889999999999988877765 699999999744332211
Q ss_pred ccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee---eecCCCCeeEEEEcCCCCEE
Q 013338 193 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYF 269 (445)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l 269 (445)
..... + ...+..++|+|||++|++++.+++.+.+|+........ ...+...+.++.++|+++++
T Consensus 76 -----------~~~~~-~-~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 76 -----------AAESA-L-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp -----------EEEEE-C-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred -----------eeecc-c-CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence 11111 1 24678899999999999998765799999988765432 33456778899999999998
Q ss_pred EEEec-CCeEEEEeCCCCCccc-------ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccc
Q 013338 270 FAAKF-DGTFYLWETNTWTSEP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL 341 (445)
Q Consensus 270 ~~~~~-dg~v~iwd~~~~~~~~-------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (445)
++++. +..|.+|+........ ..........++|++++.+++...........+............ .. ..
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-~~ 220 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV-QT-LD 220 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE-EE-EE
T ss_pred eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeee-ee-ee
Confidence 87765 5579999987754311 123455678899999999988776655555555432211110000 00 00
Q ss_pred cccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCC
Q 013338 342 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP 421 (445)
Q Consensus 342 ~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~ 421 (445)
..............+++++++++++...... +.+.+|++....... ... ........+.+++|+|||++
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~-~~~~~~~~p~~~a~spDGk~---- 289 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVL-SKE-GFQPTETQPRGFNVDHSGKY---- 289 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCE-EEE-EEEECSSSCCCEEECTTSSE----
T ss_pred eeecCCCccccceeEEEecccCceeeecccC-----CeEEEEEEcCCCCEE-EEE-EEeCCCCCeeEEEEeCCCCE----
Confidence 0000111112567789999999888876542 789999987544321 111 22234566889999999997
Q ss_pred eEEEEecCeeeEeeeeeeec
Q 013338 422 LLSVCWSSGFCCTYPLIFRS 441 (445)
Q Consensus 422 ~l~~~~~~G~v~~~~~~~~~ 441 (445)
+++.+..++.|.+|.+...+
T Consensus 290 l~va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 290 LIAAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EEEECTTTCEEEEEEEETTT
T ss_pred EEEEECCCCeEEEEEEECCC
Confidence 34445567889999876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=5.8e-21 Score=169.42 Aligned_cols=245 Identities=11% Similarity=0.121 Sum_probs=180.9
Q ss_pred CCeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~ 177 (445)
..+..++|+|||++|+ +++.++.|++||+. +++.+..+. ....+..++|++++..+++++. ++.+.+|+.....
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~--t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTA--TNNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETT--TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECC--CCceeeeee--ccccccccccccccccccccccccceeeecccccce
Confidence 3578899999999875 56688999999985 466555553 2345789999999887777665 4789999987321
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecCCCCe
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL 257 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v 257 (445)
....+..+ ....++.|+|+++.++.++..++.+.+|+..+............+
T Consensus 108 -------------------------~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (301)
T d1l0qa2 108 -------------------------VAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160 (301)
T ss_dssp -------------------------EEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred -------------------------eeeecccc--ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc
Confidence 23333333 567899999999998777665468999999998887777777889
Q ss_pred eEEEEcCCCCEEEEEecC-CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccc
Q 013338 258 SILKWSPTGDYFFAAKFD-GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL 336 (445)
Q Consensus 258 ~~~~~sp~g~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (445)
..++++|+++.+++++.+ +.+.+|+....+..........+..++|+++++.++++..+. ....+.+|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~-~~~~v~v~D~~------- 232 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK-YFNTVSMIDTG------- 232 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS-SCCEEEEEETT-------
T ss_pred eEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccc-eeeeeeeeecC-------
Confidence 999999999988877665 677888888776655555556788899999999988664332 12334444332
Q ss_pred cCccccccccccCCCccceEEeCCCCCEEEEEE-cCCCcccceEEEEEEccCCCeee
Q 013338 337 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLIS 392 (445)
Q Consensus 337 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s-~d~~d~~d~~i~vwd~~~~~~~~ 392 (445)
+.+.+..+..+..+.+++|+|||++|++++ .+ +.|++||+++++++.
T Consensus 233 ---t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~------~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 233 ---TNKITARIPVGPDPAGIAVTPDGKKVYVALSFC------NTVSVIDTATNTITA 280 (301)
T ss_dssp ---TTEEEEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEE
T ss_pred ---CCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC------CeEEEEECCCCeEEE
Confidence 334445555555789999999999886544 44 899999999987763
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=1.3e-21 Score=183.02 Aligned_cols=289 Identities=10% Similarity=0.041 Sum_probs=178.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~ 176 (445)
..+..++|||||++|++++.|+.+++||+++.+......+. .+|...+.+++|+|||+++++++ .++.+++||....
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence 46899999999999999999999999999764433322222 24555667788889998876665 5799999998844
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce--eeecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~--~~~~~~ 254 (445)
.......... .. ..............+.+++++..++....+.+.+.+++....... ....+.
T Consensus 142 ~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 206 (426)
T d1hzua2 142 EPKQIVSTRG-MT--------------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA 206 (426)
T ss_dssp CEEEEEECCE-EC--------------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC
T ss_pred ceeEEeeccC-CC--------------ccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC
Confidence 3322221110 00 000011112456778888999888887776678888887766543 344567
Q ss_pred CCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCc---------------------------------------------
Q 013338 255 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS--------------------------------------------- 288 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~--------------------------------------------- 288 (445)
..+..++|+|++++++++.. +..+.+++..+++.
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 78899999999998776653 34555665543321
Q ss_pred ----------ccccCCCCCeeEEEECCCCCeEEEEEcC---CceEEEEEeccCCCCcc-ccccCccccccccccCCC-cc
Q 013338 289 ----------EPWSSTSGFVTGATWDPEGRMILLAFAG---SLTLGSIHFASKPPSLD-AHLLPVDLPDIVSLTGSQ-GI 353 (445)
Q Consensus 289 ----------~~~~~~~~~v~~~~~sp~~~~l~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v 353 (445)
..+.+|...+..++|+|++++|++.... ...+..+++|+...... ..+.+ ......+..+. .|
T Consensus 287 ~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~--~~~~~~~~~~~~rv 364 (426)
T d1hzua2 287 NHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP--IAEWADLGEGAKRV 364 (426)
T ss_dssp TCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC--HHHHHCCCSSCCCE
T ss_pred ccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec--cchhcccCCCCccE
Confidence 1233556678889999999999864211 01123344444321100 00000 00011122333 68
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
..++|||||++++.+...+ +..|+.|+|||.+++++. ..+.++. .++|+|+|
T Consensus 365 ~~~~fSpDGk~i~vs~~~~-~~~~~~i~v~D~~T~k~~-----~~i~~~~------~~tp~Gk~ 416 (426)
T d1hzua2 365 VQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKTLKLK-----AVVKDPR------LITPTGKF 416 (426)
T ss_dssp EEEEECSSSSEEEEEECCC-TTSCCEEEEEETTTTEEE-----EEECCTT------CCSEEEEE
T ss_pred EEEEECCCCCEEEEEEecC-CCCCCeEEEEECCCCeEE-----EEECCCC------ccCCCceE
Confidence 9999999999876543211 012389999999998765 2444442 45788887
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=6.4e-22 Score=185.05 Aligned_cols=301 Identities=8% Similarity=-0.089 Sum_probs=184.9
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe--cCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT--SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP 176 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~ 176 (445)
..+..++|||||++|++++.|+.+++||+.+.+......+. .+|.+.+.+.+|+|||+++++++ .++.|++||....
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~ 141 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence 46899999999999999999999999999764443333332 23555666777889998876554 5799999999854
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee--eecCC
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGF 254 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~--~~~~~ 254 (445)
.....+.... ... .............+.++|+|..++++..+.+.|.+||..+.+... ...+.
T Consensus 142 ~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g 206 (432)
T d1qksa2 142 EPKKIQSTRG-MTY--------------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206 (432)
T ss_dssp CEEEEEECCE-ECT--------------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred cceeeeccCC-ccc--------------cceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc
Confidence 4333222110 000 000111235677899999999887766665899999998876543 33456
Q ss_pred CCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCCccccc------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEecc
Q 013338 255 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS 327 (445)
Q Consensus 255 ~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~ 327 (445)
..+..++|+|+|+++++++. ++.+.++|..+++..... .+........+...+.........+..+..+....
T Consensus 207 ~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 286 (432)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence 77899999999998877665 558999999887763221 23334444555555555554443444443333211
Q ss_pred CCCCccccccCc-------cccc--------------cccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc
Q 013338 328 KPPSLDAHLLPV-------DLPD--------------IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA 385 (445)
Q Consensus 328 ~~~~~~~~~~~~-------~~~~--------------~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~ 385 (445)
.. ...+.+.+ .... ...+..|. ...++++ ||++.|++++.| +.+++|++
T Consensus 287 ~~--~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d------~~~k~w~~ 357 (432)
T d1qksa2 287 EG--HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSD------PEFKTLPI 357 (432)
T ss_dssp TT--CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSC------CCEEEECH
T ss_pred cc--ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccC------CceEeccc
Confidence 10 00000000 0000 00111222 2334444 677777776665 77888877
Q ss_pred cCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEe----cCeeeEeee
Q 013338 386 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYP 436 (445)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~----~~G~v~~~~ 436 (445)
.++. .+..|...|.+++|||||+++ +...| ++|+|.+|+
T Consensus 358 ~~~~--------~l~~~~~~v~~~~fS~DG~~v----~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 358 AEWA--------GITEGQPRVVQGEFNKDGTEV----WFSVWNGKDQESALVVVD 400 (432)
T ss_dssp HHHH--------TCCSSCCEEEEEEECTTSSEE----EEEEECCTTSCCEEEEEE
T ss_pred cccc--------ccCCCCCcEEEeEECCCCCEE----EEEEecCCCCCCcEEEEE
Confidence 5432 223466678899999999872 33344 467888776
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.6e-21 Score=175.54 Aligned_cols=255 Identities=11% Similarity=0.024 Sum_probs=171.9
Q ss_pred EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 138 ~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
.+..+|.+.|++|+|+|+++.|++++.||+|+|||+....... ......+|. ..|.+
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~----------------------~~~~~~~h~-~~V~~ 61 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----------------------DLLQSLRYK-HPLLC 61 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----------------------EEEEEEECS-SCEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce----------------------EEEEecCCC-CCEEE
Confidence 3446899999999999999999999999999999997433221 122233464 89999
Q ss_pred EEECCC-CCeEEEEEecCCeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc----
Q 013338 218 LSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---- 290 (445)
Q Consensus 218 ~~~sp~-~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---- 290 (445)
++|+|+ +.+|++|+.| |.|++|++..+........ ........+.++...+++++.++.+++||+++.....
T Consensus 62 v~f~~~~~~~l~sg~~d-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 62 CNFIDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp EEEEESSSEEEEEEETT-SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred EEEeCCCCCEEEEcccc-cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeec
Confidence 999986 4578888888 7999999988776554432 3344556667788999999999999999987654311
Q ss_pred -cc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEe-CCCCCEE
Q 013338 291 -WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW-DASGERL 365 (445)
Q Consensus 291 -~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-sp~g~~l 365 (445)
.. ........+.+.+.+..++.+.. ++.+..+++..... ........... .+....+ ..++..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTMDTNSSRLIVGMN-NSQVQWFRLPLCED----------DNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp ESCSSSSSSCCCEEEEEECSSEEEEEES-TTEEEEEESSCCTT----------CCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ccccccccceeeeeeeeccCCceeeecC-CCcEEEEecccCcc----------cceeeeecccccceeeeEeecCCCCEE
Confidence 11 12233455677788888886643 45555555432211 01111111222 3444444 4567888
Q ss_pred EEEEcCCCcccceEEEEEEccCCCeee-------eee---eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEee
Q 013338 366 AVSYKGGDDIYKGLIAIYDARRTPLIS-------LSL---IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY 435 (445)
Q Consensus 366 ~~~s~d~~d~~d~~i~vwd~~~~~~~~-------~~~---~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~ 435 (445)
++++.+ |.+.+|+........ ... .....+|...|++++|+|++++ |+.|.++|.|.+|
T Consensus 210 ~~~s~d------g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-----lasg~~Dg~v~vW 278 (342)
T d1yfqa_ 210 ACSSID------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSDGIISCW 278 (342)
T ss_dssp EEEETT------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETTSCEEEE
T ss_pred EeecCC------CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-----EEEECCCCEEEEE
Confidence 888888 899999986432110 000 1112345667889999999875 7888899999999
Q ss_pred eee
Q 013338 436 PLI 438 (445)
Q Consensus 436 ~~~ 438 (445)
++.
T Consensus 279 D~~ 281 (342)
T d1yfqa_ 279 NLQ 281 (342)
T ss_dssp ETT
T ss_pred ECC
Confidence 864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=2.5e-21 Score=175.24 Aligned_cols=291 Identities=9% Similarity=0.002 Sum_probs=189.5
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccc
Q 013338 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVR 183 (445)
Q Consensus 105 ~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~ 183 (445)
++|++++++|++++.+++|.+||+. +++.+..+...+...+.+++|+|||+++++++ .++.|.+||+.+......+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~--t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECC--CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 4789999999999999999999995 46766666556777889999999988887766 46999999998443322211
Q ss_pred cccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-----------CCeEEEEEccCCCcee---
Q 013338 184 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----------SSSFTIWDVAQGLGTP--- 249 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~g~v~vwd~~~~~~~~--- 249 (445)
... ....+ ...+..++|+|||+++++++.+ ++.+.+|+..+++...
T Consensus 80 ~~~-------------------~~~~~-~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 139 (346)
T d1jmxb_ 80 LSS-------------------VPGEV-GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139 (346)
T ss_dssp SCC-------------------STTEE-EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred ccc-------------------ccccc-CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE
Confidence 110 00001 1346689999999999877532 1478899988775532
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCC
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 329 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~ 329 (445)
.......+..+.++++++.+++ ++.+.+|++.+++.............+.++|++..++...........+......
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (346)
T d1jmxb_ 140 TFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216 (346)
T ss_dssp EEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred eeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence 2233456777778888776654 3568999999887744333344556667778777665443333322222111000
Q ss_pred C-----------CccccccCcc-cc-ccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeee
Q 013338 330 P-----------SLDAHLLPVD-LP-DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 330 ~-----------~~~~~~~~~~-~~-~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~ 395 (445)
. ......++.. .. .......+. .+..+.+++++.++++... +.|++||..+++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~v~d~~~~~~~~--- 286 (346)
T d1jmxb_ 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-------NRLAKYDLKQRKLIK--- 286 (346)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-------SEEEEEETTTTEEEE---
T ss_pred ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-------CeEEEEECCCCcEEE---
Confidence 0 0000001111 11 112223344 6788899999988887764 579999999887653
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+. +...+.+++|||||++ +.++..+|.|.+|+..
T Consensus 287 --~~~-~~~~~~~va~s~DG~~-----l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 287 --AAN-LDHTYYCVAFDKKGDK-----LYLGGTFNDLAVFNPD 321 (346)
T ss_dssp --EEE-CSSCCCEEEECSSSSC-----EEEESBSSEEEEEETT
T ss_pred --EEc-CCCCEEEEEEcCCCCE-----EEEEeCCCcEEEEECc
Confidence 222 3457899999999986 6677778999999874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.1e-21 Score=173.06 Aligned_cols=239 Identities=13% Similarity=0.152 Sum_probs=162.4
Q ss_pred CcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCC
Q 013338 133 GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG 212 (445)
Q Consensus 133 ~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (445)
.+....+ .+|.+.|.+ +++++|++|++++.||.|+|||+.+. .++..+.+|.
T Consensus 6 ~~~~~~l-~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~-------------------------~~~~~~~~h~- 57 (342)
T d2ovrb2 6 LKSPKVL-KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG-------------------------KCLRTLVGHT- 57 (342)
T ss_dssp CCCCEEE-ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC-------------------------CEEEECCCCS-
T ss_pred CCcCEEE-CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC-------------------------CEEEEEeCCC-
Confidence 3444444 689999865 46677888999999999999999732 2556678886
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CC------------------------------------
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FG------------------------------------ 255 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~------------------------------------ 255 (445)
..|.+++|+|+ +|++++.| |.+++|+............ ..
T Consensus 58 ~~V~~v~~~~~--~l~s~s~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 134 (342)
T d2ovrb2 58 GGVWSSQMRDN--IIISGSTD-RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM 134 (342)
T ss_dssp SCEEEEEEETT--EEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEeCCC--ccccceec-ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeee
Confidence 89999999874 89999999 6999999876522111110 00
Q ss_pred --CeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 256 --GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 256 --~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
......+.+....+++++.|+.|++||....+. ..+..|...+..+ ++++.++++++ .++.+..|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~------ 205 (342)
T d2ovrb2 135 GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVE------ 205 (342)
T ss_dssp CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETT------
T ss_pred cccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeecc------
Confidence 111122334556778888899999999887765 4455666555544 45678888664 34445544432
Q ss_pred cccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC---CCCCCCc
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKP 408 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~v~~ 408 (445)
....+..+.+|. .+.+++++ +++|++++.| +.|++||+...+... .+.+ |...+.+
T Consensus 206 -------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d------~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~ 265 (342)
T d2ovrb2 206 -------TGNCIHTLTGHQSLTSGMELK--DNILVSGNAD------STVKIWDIKTGQCLQ-----TLQGPNKHQSAVTC 265 (342)
T ss_dssp -------TCCEEEEECCCCSCEEEEEEE--TTEEEEEETT------SCEEEEETTTCCEEE-----EECSTTSCSSCEEE
T ss_pred -------cceeeeEecccccceeEEecC--CCEEEEEcCC------CEEEEEecccccccc-----cccccceeeeceee
Confidence 345566677777 67777665 5699999988 899999998866542 3333 4444454
Q ss_pred eeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 409 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 409 v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+.| +++ +++.|..+|.|.+|++.
T Consensus 266 ~~~--~~~-----~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 266 LQF--NKN-----FVITSSDDGTVKLWDLK 288 (342)
T ss_dssp EEE--CSS-----EEEEEETTSEEEEEETT
T ss_pred ccc--CCC-----eeEEEcCCCEEEEEECC
Confidence 544 443 57778889999999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=6.3e-21 Score=171.92 Aligned_cols=283 Identities=11% Similarity=0.050 Sum_probs=180.4
Q ss_pred CEEEEEECCCeEEEEEccCCCCcceeEEec-CCCCCeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccc
Q 013338 112 HIVAFISGSTQVIVRDYEDSEGKDACILTS-DSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 112 ~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
+++++++.|++|.|||+. +++.+..+.. .+...+.+++|+|||+++++++ .++.|.+||+.+.+....+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~--s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~--- 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST--- 76 (337)
T ss_dssp EEEEEEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB---
T ss_pred eEEEEEcCCCEEEEEECC--CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC---
Confidence 579999999999999995 4666665543 3445688999999988876654 57999999998443322211110
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-----------CCeEEEEEccCCCceeeecCCCCee
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----------SSSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
...+ ...+..++|+|++++++++..+ .+.+.+||..+++..........+.
T Consensus 77 -----------------~~~~-~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 138 (337)
T d1pbyb_ 77 -----------------PEER-VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQIT 138 (337)
T ss_dssp -----------------TTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCC
T ss_pred -----------------Cccc-ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCce
Confidence 0001 1345689999999999887642 1478899999988877777778899
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEE---EEeccCCCCccc-
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS---IHFASKPPSLDA- 334 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~- 334 (445)
.++|+|+|+++++++.+ +.+||..+++...............+++++..+............ ...+........
T Consensus 139 ~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T d1pbyb_ 139 MLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp CEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred EEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecc
Confidence 99999999999988654 678999987763222222222223344444333222111111111 111111000000
Q ss_pred -----cccCc-ccc-ccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCC
Q 013338 335 -----HLLPV-DLP-DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP 406 (445)
Q Consensus 335 -----~~~~~-~~~-~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 406 (445)
..+.. ... ....+..+. .+..++++|++.+++.+ + +.|++||+.+++.+. .+ .+...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~i~v~d~~~~~~~~-----~~-~~~~~~ 282 (337)
T d1pbyb_ 217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y------NVLESFDLEKNASIK-----RV-PLPHSY 282 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E------SEEEEEETTTTEEEE-----EE-ECSSCC
T ss_pred cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--c------ccEEEEECCCCcEEE-----EE-cCCCCE
Confidence 00000 111 111223344 67788999999998765 3 689999999987663 22 245678
Q ss_pred CceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 407 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 407 ~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+++|+|||++ |.++..+|.|.+|+..
T Consensus 283 ~~~~~s~dG~~-----l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 283 YSVNVSTDGST-----VWLGGALGDLAAYDAE 309 (337)
T ss_dssp CEEEECTTSCE-----EEEESBSSEEEEEETT
T ss_pred EEEEECCCCCE-----EEEEeCCCcEEEEECC
Confidence 99999999885 7788889999999863
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.4e-19 Score=156.59 Aligned_cols=235 Identities=16% Similarity=0.236 Sum_probs=163.6
Q ss_pred CCeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCc
Q 013338 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA 179 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~ 179 (445)
..|.+++| ++++|++|+.|+.+++|++.. +....... .+. .....+.+....++++..++.+.+|+.......
T Consensus 56 ~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~--~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (293)
T d1p22a2 56 GSVLCLQY--DERVIITGSSDSTVRVWDVNT--GEMLNTLI-HHC--EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128 (293)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSS--CCEEEEEC-CCC--SCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred CCEeeeec--ccceeeccccccccccccccc--cccccccc-ccc--cccccccccccceeecccccceeEeeccccccc
Confidence 45888776 678999999999999999854 44333332 222 223344445478888889999999998733322
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee-eecCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~-~~~~~~~v~ 258 (445)
.....+..|. ..+..+.+.+ ..+++++.| +.|++||+++++... +..+...+.
T Consensus 129 ----------------------~~~~~~~~~~-~~v~~~~~~~--~~~~~~s~d-~~i~~~d~~~~~~~~~~~~~~~~v~ 182 (293)
T d1p22a2 129 ----------------------TLRRVLVGHR-AAVNVVDFDD--KYIVSASGD-RTIKVWNTSTCEFVRTLNGHKRGIA 182 (293)
T ss_dssp ----------------------EEEEEECCCS-SCEEEEEEET--TEEEEEETT-SEEEEEETTTCCEEEEEECCSSCEE
T ss_pred ----------------------cccccccccc-cccccceecc--cccccccCC-CceeeecCCCCcEEEEEcccccccc
Confidence 1233345554 6777777654 567888888 799999999887654 445667777
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCc-ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.+.++ +.++++++.|+.|++||+++.+. .....+...+.. +++++.+|++++ .++.+..|++....... .
T Consensus 183 ~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~----~ 253 (293)
T d1p22a2 183 CLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA-YDGKIKVWDLVAALDPR----A 253 (293)
T ss_dssp EEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE-TTSCEEEEEHHHHTSTT----S
T ss_pred cccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc-CCCEEEEEECCCCcccc----c
Confidence 77764 67899999999999999999877 444566666654 556778888664 44556666553221100 0
Q ss_pred CccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEE
Q 013338 338 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 338 ~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd 384 (445)
......+..+.+|. .|++++|+ +++|++++.| ++|+|||
T Consensus 254 ~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~D------g~i~iWD 293 (293)
T d1p22a2 254 PAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD------DTILIWD 293 (293)
T ss_dssp CTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSS------SEEEEEC
T ss_pred cCCceeeEEecCCCCCEEEEEEc--CCEEEEEecC------CEEEEeC
Confidence 11234566778898 89999994 6789999888 9999997
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.3e-18 Score=153.01 Aligned_cols=254 Identities=11% Similarity=0.102 Sum_probs=171.4
Q ss_pred cCCeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCC
Q 013338 99 EVDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP 176 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~ 176 (445)
...+..++|||||++|++++ .|+.|++|+++..+..........+...+..++|+|||+++++++. ++.+.+|+....
T Consensus 36 ~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~ 115 (333)
T d1ri6a_ 36 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 115 (333)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence 35689999999999996655 5899999999764444333332345566888999999988888876 478999987622
Q ss_pred CCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee------
Q 013338 177 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI------ 250 (445)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~------ 250 (445)
... .......+ ...+.++.++|+++++++++.....+.+|+.........
T Consensus 116 ~~~-----------------------~~~~~~~~-~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (333)
T d1ri6a_ 116 LPV-----------------------GVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV 171 (333)
T ss_dssp EEE-----------------------EEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred cce-----------------------ecccccCC-CccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceee
Confidence 111 11112223 257889999999999998887656899999876543221
Q ss_pred -ecCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCcc-----cc------cCCCCCeeEEEECCCCCeEEEEEcCC
Q 013338 251 -RRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSE-----PW------SSTSGFVTGATWDPEGRMILLAFAGS 317 (445)
Q Consensus 251 -~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~-----~~------~~~~~~v~~~~~sp~~~~l~~~~~~~ 317 (445)
.........++|++++.+++... ..+...+|+....... .. .........+++++++++++.+....
T Consensus 172 ~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~ 251 (333)
T d1ri6a_ 172 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 251 (333)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC
Confidence 12345678999999999876554 4567888876543321 11 12234567789999999999887777
Q ss_pred ceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEc--cCCCee
Q 013338 318 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLI 391 (445)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~--~~~~~~ 391 (445)
..+..+.+..... ...+....... .+.+++|+|||++|++++.++ +.|++|++ ++|++.
T Consensus 252 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~-----~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 252 SLITVFSVSEDGS----------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLH 313 (333)
T ss_dssp TEEEEEEECTTSC----------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEE
T ss_pred CeEEEEEEcCCCC----------EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC-----CeEEEEEEECCCCcEE
Confidence 7777766643210 01111111222 578999999999998876553 78999965 455543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=4.5e-19 Score=159.55 Aligned_cols=237 Identities=12% Similarity=0.037 Sum_probs=159.0
Q ss_pred CeeEEEEccCCCEEE-EEECCCeEEEEEccCCCCcceeEEecC----CCCCeeEEEECcCCCcEEEEec-----------
Q 013338 101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSEGKDACILTSD----SQRDVKVLEWRPNGGRSLSVGC----------- 164 (445)
Q Consensus 101 ~v~~~~~sp~g~~la-~~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~l~~spd~~~l~~~~~----------- 164 (445)
.+.+++|+|||++++ +++.++.|.+||+. +++.+..+... +...+..++|+|+++.++++..
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~--t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV--TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETT--TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECC--CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence 467899999999875 56689999999995 46665554321 1234568999999888877764
Q ss_pred -CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 165 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 165 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
+..+.+||.... .....+..+ ..+..++|+|+|+++++++. .+.+||..
T Consensus 113 ~~~~~~~~d~~~~-------------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~---~~~~~d~~ 162 (337)
T d1pbyb_ 113 QPTRVALYDAETL-------------------------SRRKAFEAP--RQITMLAWARDGSKLYGLGR---DLHVMDPE 162 (337)
T ss_dssp CCCEEEEEETTTT-------------------------EEEEEEECC--SSCCCEEECTTSSCEEEESS---SEEEEETT
T ss_pred cccceeeccccCC-------------------------eEEEecccc--CCceEEEEcCCCCEEEEEcC---Ccceeeee
Confidence 345666766622 233334333 56889999999999998753 57889998
Q ss_pred CCCceeeecCCCCeeEEEEcCCCC------------------------EEEEEecCCeEEEEeCCCCCcc--cccCCCCC
Q 013338 244 QGLGTPIRRGFGGLSILKWSPTGD------------------------YFFAAKFDGTFYLWETNTWTSE--PWSSTSGF 297 (445)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~sp~g~------------------------~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~ 297 (445)
+++...............++|++. .+..+..++.+.+||..+++.. ....+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (337)
T d1pbyb_ 163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcc
Confidence 876544333222111122222211 1112233456999999988763 34466777
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK 377 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d 377 (445)
+..+.+++++.+++.+. . .+.+|+.. +.+.+..+.....+.+++|+|||++|++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~---~---~i~v~d~~----------~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~------ 300 (337)
T d1pbyb_ 243 YFSTAVNPAKTRAFGAY---N---VLESFDLE----------KNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL------ 300 (337)
T ss_dssp EEEEEECTTSSEEEEEE---S---EEEEEETT----------TTEEEEEEECSSCCCEEEECTTSCEEEEESBS------
T ss_pred eEEEEecccceEEEEcc---c---cEEEEECC----------CCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC------
Confidence 88899999999987552 3 34444432 33444444433478999999999999999877
Q ss_pred eEEEEEEccCCCee
Q 013338 378 GLIAIYDARRTPLI 391 (445)
Q Consensus 378 ~~i~vwd~~~~~~~ 391 (445)
+.|++||+++++.+
T Consensus 301 ~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 301 GDLAAYDAETLEKK 314 (337)
T ss_dssp SEEEEEETTTCCEE
T ss_pred CcEEEEECCCCcEE
Confidence 89999999998766
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=3.3e-18 Score=159.55 Aligned_cols=191 Identities=14% Similarity=0.082 Sum_probs=140.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 110 HKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 110 ~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
+.-++++.+.+|+|.|||.+ +++.+..+..+ ..+..++|||||+++++++.|+.+++||+.+.+....
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~--t~~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~-------- 98 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGS--TYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-------- 98 (432)
T ss_dssp GGEEEEEETTTTEEEEEETT--TCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--------
T ss_pred CcEEEEEEcCCCEEEEEECC--CCcEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--------
Confidence 33456888999999999985 57777777533 4699999999999999888999999999974432211
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEE-EEecCCeEEEEEccCCCceeee------------cCCCC
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS-ASYESSSFTIWDVAQGLGTPIR------------RGFGG 256 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~g~v~vwd~~~~~~~~~~------------~~~~~ 256 (445)
..+.....|. ..+.+..|+|||++|++ ++.+ ++|++||..+++..... .....
T Consensus 99 ------------~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~-~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~ 164 (432)
T d1qksa2 99 ------------AEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWP-PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164 (432)
T ss_dssp ------------EEEECCSEEE-EEEECCSTTCTTTEEEEEEEET-TEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred ------------EEEecCCCCC-CeEEecccCCCCCEEEEEcCCC-CeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence 1112222332 45667788999998754 5556 79999999988765432 13356
Q ss_pred eeEEEEcCCCCEEE-EEecCCeEEEEeCCCCCccc--ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 257 LSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 257 v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
...+.++|+|+.++ +...++.|.+||..+.+... ...+...+..++|+|+|++++++...+..+..+...
T Consensus 165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence 67889999998764 56668899999998876532 224566788999999999999888776666666653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=6.3e-16 Score=141.12 Aligned_cols=287 Identities=11% Similarity=-0.049 Sum_probs=172.1
Q ss_pred cCCeeEEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---------
Q 013338 99 EVDLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--------- 164 (445)
Q Consensus 99 ~~~v~~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~--------- 164 (445)
..++.+++++|||+.++... ..+.+.+||. .+++.+..+. .+. ...++|+|||++++++..
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~--~tg~~~~~~~-~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDA--GSGSILGHVN-GGF--LPNPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCCccccccCCCCCEEEEEcccccCCCceEEEEEC--CCCCEEEEEe-CCC--CccEEEcCCCCEEEEEeecCCcccccc
Confidence 45688999999999987643 3345667765 4677766653 232 337999999988887653
Q ss_pred -CCcEEEEccCCCCCccccccccccc------cccccCCCCCceE------------EEEe----ecccCCCceeEEEEC
Q 013338 165 -KGGICIWAPSYPGNAASVRSGAASF------LGALSRGPGTRWT------------LVDF----LRSQNGEQITALSWG 221 (445)
Q Consensus 165 -dg~i~vw~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------~~~~----~~~~~~~~v~~~~~s 221 (445)
++.|.+||..+.+....+....... ...+....+++.. .+.. ...+. ....++.++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 173 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-SSPTCYHIH 173 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-ccceeEEEe
Confidence 4779999998655443332111000 0111112222211 1110 11121 345688899
Q ss_pred CCCCeEE-EEEecCCeEEEEEccCCCceeeec-------CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---
Q 013338 222 PDGRYLA-SASYESSSFTIWDVAQGLGTPIRR-------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--- 290 (445)
Q Consensus 222 p~~~~l~-~~~~d~g~v~vwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--- 290 (445)
|+++.++ +.+.| |.+.+|+...+....... .......+.+++++.+ +..+.++.+.+|+..+.....
T Consensus 174 ~~g~~~~v~~~~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~ 251 (373)
T d2madh_ 174 PGAPSTFYLLCAQ-GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAP 251 (373)
T ss_pred cCCCcEEEEEcCC-CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEe
Confidence 9998765 45556 799999998876643321 1122344556666554 455678899999988765421
Q ss_pred ccC----------CCCCeeEEEECCCCCeEEEEEcCCceE------EEEEeccCCCCccccccCccccccccccCCCccc
Q 013338 291 WSS----------TSGFVTGATWDPEGRMILLAFAGSLTL------GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE 354 (445)
Q Consensus 291 ~~~----------~~~~v~~~~~sp~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 354 (445)
... .......+++++++..++......... ..+.+++.. +.+.+..+.....+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----------t~~~~~~~~~~~~~~ 321 (373)
T d2madh_ 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL----------VGQTSSQISLGHDVD 321 (373)
T ss_pred eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC----------CCcEEEEecCCCCee
Confidence 111 122344567788887776543322111 112222211 444455554444789
Q ss_pred eEEeCCCCCEE--EEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 355 KIAWDASGERL--AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 355 ~~~~sp~g~~l--~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.++|+|||+.+ ++++.+ +.|++||+.+++.+ +.+..++...+.+++.++
T Consensus 322 ~~a~spDG~~~l~vt~~~d------~~v~v~D~~tg~~~-----~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 322 AISVAQDGGPDLYALSAGT------EVLHIYDAGAGDQD-----QSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCCEEEEEEeCCC------CeEEEEECCCCCEE-----EEECCCCCCCcEEEEecC
Confidence 99999999854 444444 89999999998876 467777777788777543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=4.1e-17 Score=147.06 Aligned_cols=240 Identities=12% Similarity=0.044 Sum_probs=157.9
Q ss_pred CeeEEEEccCCCEEEE-EECCCeEEEEEccCCCCcceeEEecCC-----CCCeeEEEECcCCCcEEEEec----------
Q 013338 101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSEGKDACILTSDS-----QRDVKVLEWRPNGGRSLSVGC---------- 164 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~-~~~d~~i~iw~~~~~~~~~~~~~~~~~-----~~~v~~l~~spd~~~l~~~~~---------- 164 (445)
.+.+++|+|||+++++ +..++.|.+||+. +++....+.... ...+..++|+|||+.++++..
T Consensus 41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~--t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLD--TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETT--TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CcceEEECCCCCEEEEEECCCCcEEEEeCc--cCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 4679999999998754 5578999999985 455554443211 124678999999888877653
Q ss_pred --CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEc
Q 013338 165 --KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 242 (445)
Q Consensus 165 --dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~ 242 (445)
++.+.+|+.........+.. .. ....+..+.++++++.+++ + +.+.+|++
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~~----------------------~~--~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 170 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVRT----------------------FP--MPRQVYLMRAADDGSLYVA---G-PDIYKMDV 170 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEE----------------------EE--CCSSCCCEEECTTSCEEEE---S-SSEEEECT
T ss_pred cCcceEEEEecccceeeeEEEe----------------------ee--ccCceEEEEecCCCEEEEe---C-CcceEEEc
Confidence 45677777663222211111 11 1245666777777766554 2 36899999
Q ss_pred cCCCceeeecCCCCeeEEEEcCCCCEE--------------------------EEEecCCeEEEEeCCCCCcc--cccCC
Q 013338 243 AQGLGTPIRRGFGGLSILKWSPTGDYF--------------------------FAAKFDGTFYLWETNTWTSE--PWSST 294 (445)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~~~sp~g~~l--------------------------~~~~~dg~v~iwd~~~~~~~--~~~~~ 294 (445)
.+++..........+..+.++|++..+ +++..+..+.+||..++... ....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (346)
T d1jmxb_ 171 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL 250 (346)
T ss_dssp TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecc
Confidence 888766555444444445555554432 23334556888898887763 34467
Q ss_pred CCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCc
Q 013338 295 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 374 (445)
Q Consensus 295 ~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d 374 (445)
...+..+.+++++.+++.... ..+ .+|+.. +.+.+..+.....+.+++|+|||++|++++.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~--~~v---~v~d~~----------~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d--- 312 (346)
T d1jmxb_ 251 TELYFTGLRSPKDPNQIYGVL--NRL---AKYDLK----------QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF--- 312 (346)
T ss_dssp SSCEEEEEECSSCTTEEEEEE--SEE---EEEETT----------TTEEEEEEECSSCCCEEEECSSSSCEEEESBS---
T ss_pred cceeEEEEEeCCCCEEEEecC--CeE---EEEECC----------CCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC---
Confidence 778889999999998886643 233 344322 33444444433378999999999999999877
Q ss_pred ccceEEEEEEccCCCee
Q 013338 375 IYKGLIAIYDARRTPLI 391 (445)
Q Consensus 375 ~~d~~i~vwd~~~~~~~ 391 (445)
+.|++||+++++.+
T Consensus 313 ---~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 313 ---NDLAVFNPDTLEKV 326 (346)
T ss_dssp ---SEEEEEETTTTEEE
T ss_pred ---CcEEEEECccCCEE
Confidence 89999999987766
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=1.1e-16 Score=145.16 Aligned_cols=268 Identities=10% Similarity=-0.027 Sum_probs=169.8
Q ss_pred eeEEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEec--C----CCCCeeEEEECcCCCcEEEEec-
Q 013338 102 LQGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTS--D----SQRDVKVLEWRPNGGRSLSVGC- 164 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~--~----~~~~v~~l~~spd~~~l~~~~~- 164 (445)
+..++|||||++|++++ .++.|++||... ++....+.. . .......++|+|+++.+++...
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~ 126 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence 44789999999888653 478899999854 554444322 1 1233467899999888877654
Q ss_pred -CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc
Q 013338 165 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 243 (445)
Q Consensus 165 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~ 243 (445)
+..+.+|+.........+.... ... .. .......+.+++|++.++....+.+.+.+++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~--~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~ 187 (355)
T d2bbkh_ 127 PAPAVGVVDLEGKAFKRMLDVPD----------------CYH-IF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187 (355)
T ss_dssp SSCEEEEEETTTTEEEEEEECCS----------------EEE-EE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred CCceeeeeecCCCcEeeEEecCC----------------cce-Ee--ecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence 4788899987443322221110 000 00 012345677888888877766555667777665
Q ss_pred CCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc---C----------CCCCeeEEEECCCCCeE
Q 013338 244 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S----------TSGFVTGATWDPEGRMI 310 (445)
Q Consensus 244 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~----------~~~~v~~~~~sp~~~~l 310 (445)
.... .+...+....+.+++..++.++.++.+++|++..++...+. . .......+++++++..+
T Consensus 188 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~ 263 (355)
T d2bbkh_ 188 VFHP----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263 (355)
T ss_dssp CCSC----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred cccc----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeE
Confidence 4432 22334556678888889999999999999999987653221 1 11233458899999988
Q ss_pred EEEEcCC------ceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE-EE-EEEcCCCcccceEEEE
Q 013338 311 LLAFAGS------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LA-VSYKGGDDIYKGLIAI 382 (445)
Q Consensus 311 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~-~~s~d~~d~~d~~i~v 382 (445)
+...... .....+.+|+.. +.+.+..+.....+.+++|+|||+. |+ +++.+ +.|++
T Consensus 264 ~~~~~~~~~~~~~~~~~~v~v~d~~----------t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d------~~i~v 327 (355)
T d2bbkh_ 264 YLLVDQRDEWRHKTASRFVVVLDAK----------TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD------KTLYI 327 (355)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETT----------TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT------TEEEE
T ss_pred EEEeccCCceeecCCCCeEEEEeCC----------CCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC------CEEEE
Confidence 7654321 112344444432 3444455544447899999999984 33 33333 89999
Q ss_pred EEccCCCeeeeeeeeeeeCCCCCCCceeEeecC
Q 013338 383 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 415 (445)
Q Consensus 383 wd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg 415 (445)
||+++++.+ +.+.+++.....+.+.++|
T Consensus 328 ~D~~tg~~~-----~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 328 HDAESGEEL-----RSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp EETTTCCEE-----EEECCCCSSCCEEECCCCC
T ss_pred EECCCCCEE-----EEEeCcCCCccEEEeCCCC
Confidence 999998876 4666666666666665543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=9.1e-15 Score=132.18 Aligned_cols=293 Identities=13% Similarity=0.071 Sum_probs=174.1
Q ss_pred EEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEe----------cCCcE
Q 013338 104 GVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGI 168 (445)
Q Consensus 104 ~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~----------~dg~i 168 (445)
-.+.+|||+++++.. .+..+.+||.. +++.+..+.. +....++|||||+.+++++ .++.|
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~--tg~~~~~~~~---g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDG---GFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETT--TTEEEEEEEE---CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECC--CCcEEEEEEC---CCCCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 345689999987654 45578889874 5766666532 2344799999998887654 35789
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-CCeEEEEEccCCCc
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLG 247 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~g~v~vwd~~~~~~ 247 (445)
++||.........+.... .-..........++|+|+++++++++.. ...+.+|+..+++.
T Consensus 81 ~v~D~~t~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPD-------------------APRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEECTTTCCEEEEEEETT-------------------CCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEecCC-------------------cceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 999998543332221110 0000001345678999999998887542 24889999998876
Q ss_pred eeeecCC--------CCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc
Q 013338 248 TPIRRGF--------GGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL 318 (445)
Q Consensus 248 ~~~~~~~--------~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~ 318 (445)
....... .....+.++++++.++... .++.+.+++...... .+...+....+.+++..++.+ ..++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (355)
T d2bbkh_ 142 KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----EDEFLINHPAYSQKAGRLVWP-TYTG 216 (355)
T ss_dssp EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----TTSCBCSCCEEETTTTEEEEE-BTTS
T ss_pred eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----eecceeeeccccCCCCeEEEe-cCCC
Confidence 5433322 2234566777777665443 344566666554432 222334556677777777755 3445
Q ss_pred eEEEEEeccCCCCccccccCccccccccccC---CCccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEccCCCee
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG---SQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLI 391 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~~~~~~ 391 (445)
.+..+.+....... +............. ......+++++++..++..+.++.. ..+..|.+||..+++.+
T Consensus 217 ~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~ 293 (355)
T d2bbkh_ 217 KIHQIDLSSGDAKF---LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293 (355)
T ss_dssp EEEEEECTTSSCEE---CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred eEEEEecCCCcEEE---EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence 56666654321100 00001111111111 1145678999999998887654321 11268999999998776
Q ss_pred eeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 392 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 392 ~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
. .+. +...+.+++|+|||+. .+++.+..+|.|.+|+.
T Consensus 294 ~-----~~~-~~~~~~~~a~spDG~~---~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 294 A-----KFE-MGHEIDSINVSQDEKP---LLYALSTGDKTLYIHDA 330 (355)
T ss_dssp E-----EEE-EEEEECEEEECCSSSC---EEEEEETTTTEEEEEET
T ss_pred E-----Eec-CCCCEEEEEEcCCCCe---EEEEEECCCCEEEEEEC
Confidence 3 222 2345789999999974 13444566788988875
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.65 E-value=6.3e-15 Score=133.91 Aligned_cols=266 Identities=9% Similarity=-0.016 Sum_probs=166.6
Q ss_pred EEEEECCCeEEEEEccCCCCcceeEEec-----------------------------CCCCCeeEEEECcCCCcEEEEec
Q 013338 114 VAFISGSTQVIVRDYEDSEGKDACILTS-----------------------------DSQRDVKVLEWRPNGGRSLSVGC 164 (445)
Q Consensus 114 la~~~~d~~i~iw~~~~~~~~~~~~~~~-----------------------------~~~~~v~~l~~spd~~~l~~~~~ 164 (445)
+++++.+|.|++|++. +++.+..+.. .|........++|||+++++...
T Consensus 14 f~Sgg~sG~V~V~dlp--S~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVP--SMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK 91 (441)
T ss_dssp EEECBTTCCEEEEEET--TTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeCCCCCcEEEEeCC--CCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence 4566789999999984 4554444311 12233444556799888877765
Q ss_pred -CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeE------
Q 013338 165 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF------ 237 (445)
Q Consensus 165 -dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v------ 237 (445)
+++|.++|+.+.+ +...+.-.....+..++|+|+|+.+++.+.....+
T Consensus 92 ~~~rVavIDl~t~k-------------------------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg 146 (441)
T d1qnia2 92 ANTRVARIRLDIMK-------------------------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG 146 (441)
T ss_dssp TTTEEEEEETTTTE-------------------------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred CCCEEEEEECCCCc-------------------------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence 5899999998332 23333322236789999999999654432211123
Q ss_pred ------------EEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC------------------------------
Q 013338 238 ------------TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------------------------------ 275 (445)
Q Consensus 238 ------------~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------------------------------ 275 (445)
..+|..+.+......-.+.+..++++|+|+++++++.+
T Consensus 147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 45777776654444445678899999999998877644
Q ss_pred -----------CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccc
Q 013338 276 -----------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI 344 (445)
Q Consensus 276 -----------g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (445)
+.+.+++....+.............+.++|||+++++++..+..+.+|++.........+ ....
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~-----~~~~ 301 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK-----IELR 301 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS-----SCGG
T ss_pred cCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc-----CCcc
Confidence 223333333333322223344567899999999999988888888888875421111111 1111
Q ss_pred ccccCC---C-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC----------CCeeeeeeeeeeeCCCCCCCcee
Q 013338 345 VSLTGS---Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----------TPLISLSLIGFIRGPGDNPKPVA 410 (445)
Q Consensus 345 ~~~~~~---~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~~~~v~~v~ 410 (445)
..+.++ . .....+|+++|..+.+.+.| ..|..|++.. .++.....+....||...+.+.+
T Consensus 302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~d------s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t 375 (441)
T d1qnia2 302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFID------SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES 375 (441)
T ss_dssp GGEEECCBCCSCEEEEEECSSSEEEEEETTT------TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS
T ss_pred eEEEeecccccCcccceecCCceEEEccccc------ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc
Confidence 111111 1 45566899999877777666 8999999851 12332223333468888999999
Q ss_pred EeecCCC
Q 013338 411 FSFHDKF 417 (445)
Q Consensus 411 ~spdg~~ 417 (445)
|+|||+|
T Consensus 376 ~~pdGk~ 382 (441)
T d1qnia2 376 RDADGKW 382 (441)
T ss_dssp TTCCCCE
T ss_pred cCCCCcE
Confidence 9999997
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.1e-12 Score=113.44 Aligned_cols=240 Identities=15% Similarity=0.176 Sum_probs=153.1
Q ss_pred eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-C--cEEEEccCCCCCccccccccccccccccCCCC
Q 013338 122 QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPG 198 (445)
Q Consensus 122 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
.|.|.|.+ |.....++. +...+.+.+|||||++|+..... + .+.+.+......
T Consensus 20 ~l~i~d~d---G~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-------------------- 75 (269)
T d2hqsa1 20 ELRVSDYD---GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-------------------- 75 (269)
T ss_dssp EEEEEETT---SCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------------------
T ss_pred EEEEEcCC---CCCcEEEec-CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce--------------------
Confidence 45555653 555555543 56778899999999999887654 3 344444431111
Q ss_pred CceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEcc--CCCceeeecCCCCeeEEEEcCCCCEEEEEe-cC
Q 013338 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA--QGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FD 275 (445)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d 275 (445)
..+..+ ........|+|+|+.++......|...++... ..................++++++.++..+ .+
T Consensus 76 ------~~~~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (269)
T d2hqsa1 76 ------RQVASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA 148 (269)
T ss_dssp ------EEEECC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred ------eEEeee-ecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceeccccc
Confidence 112222 36778899999999999887654444444433 333344444555666777888877665444 34
Q ss_pred C--eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCcc
Q 013338 276 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 353 (445)
Q Consensus 276 g--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 353 (445)
+ .|.+.++..+....+...........|+|+++.++......+....+.+.. ..............
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~ 216 (269)
T d2hqsa1 149 GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL------------ATGGVQVLSSTFLD 216 (269)
T ss_dssp SSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET------------TTCCEEECCCSSSC
T ss_pred CCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeec------------ccccceEeecCccc
Confidence 4 677778888776666666777888999999999997766554433333221 11222222222256
Q ss_pred ceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEee
Q 013338 354 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 413 (445)
Q Consensus 354 ~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 413 (445)
....|||||++|+..+..+.. ..|++++++.+... .+......+...+|||
T Consensus 217 ~~p~~SPDG~~i~f~s~~~~~---~~l~~~~~dg~~~~------~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 217 ETPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKA------RLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEEEECTTSSEEEEEEEETTE---EEEEEEETTSCCEE------ECCCSSSEEEEEEECC
T ss_pred cceEECCCCCEEEEEEcCCCC---cEEEEEECCCCCEE------EEeCCCCcEEeEEeCC
Confidence 788999999999887765443 78999999876654 3344455667788988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.61 E-value=1.4e-13 Score=125.29 Aligned_cols=257 Identities=9% Similarity=-0.030 Sum_probs=145.9
Q ss_pred CCCCCeeEEEECcCCCcEEEEec-----CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCcee
Q 013338 142 DSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT 216 (445)
Q Consensus 142 ~~~~~v~~l~~spd~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (445)
.+..++.+++++|||+++++... .+.+.+||..+.+ .+..+..+. ..
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~-------------------------~~~~~~~~~---~~ 69 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS-------------------------ILGHVNGGF---LP 69 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCC-------------------------EEEEEeCCC---Cc
Confidence 47888999999999998877532 3568888877433 233333332 23
Q ss_pred EEEECCCCCeEEEEEec---------CCeEEEEEccCCCceeeec-----------------------------------
Q 013338 217 ALSWGPDGRYLASASYE---------SSSFTIWDVAQGLGTPIRR----------------------------------- 252 (445)
Q Consensus 217 ~~~~sp~~~~l~~~~~d---------~g~v~vwd~~~~~~~~~~~----------------------------------- 252 (445)
.++|+|||++|++++.+ .+.|.+||+.+++......
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 68888888888877532 1478888887764321110
Q ss_pred -------------CCCCeeEEEEcCCCCEE-EEEecCCeEEEEeCCCCCccccc-------CCCCCeeEEEECCCCCeEE
Q 013338 253 -------------GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMIL 311 (445)
Q Consensus 253 -------------~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~ 311 (445)
+...+.++.++|+|+.+ ++.+.|+.+.+||...++..... ........+.+++++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 150 VGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred eEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 01123456677776654 56677888888888776652211 1122234455666665555
Q ss_pred EEEcCCceEEEEEeccCCCCccccccCccccccccccCC-CccceEEeCCCCCEEEEEEcCCCc----ccceEEEEEEcc
Q 013338 312 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDAR 386 (445)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~~l~~~s~d~~d----~~d~~i~vwd~~ 386 (445)
.+ .+..+..+......... ...+............. .....+++++++..++....++.. ..++.+.+||+.
T Consensus 230 ~~--~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 306 (373)
T d2madh_ 230 PV--YSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred ec--CCceEEEEEcCCCeEEE-EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence 43 22334444332211000 00000000000000001 134567788888776654433211 112789999999
Q ss_pred CCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 387 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
+++.+. .+ .+...+..++|||||+.. +++.+..+|.|.+|+..
T Consensus 307 t~~~~~-----~~-~~~~~~~~~a~spDG~~~---l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 307 VGQTSS-----QI-SLGHDVDAISVAQDGGPD---LYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCcEEE-----Ee-cCCCCeeEEEECCCCCEE---EEEEeCCCCeEEEEECC
Confidence 887662 22 356678899999999851 34556678899998864
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=1.3e-13 Score=129.67 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=100.9
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEe----cCCCCCeeEEEECcCCCcEEEEec---------CCcEEE
Q 013338 104 GVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILT----SDSQRDVKVLEWRPNGGRSLSVGC---------KGGICI 170 (445)
Q Consensus 104 ~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~l~~spd~~~l~~~~~---------dg~i~v 170 (445)
.+.|.++++++. ..++.+.+|++.. ++....+. ..|...|.++.|||||++|+.+.. ++.+.+
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEY--GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTT--CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCC--CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 578999998876 4678899999864 54443332 235578999999999988887753 367889
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~ 250 (445)
||+..+. . ..+..+. ..+..+.|||||+.||... + +.+.+|+..+++...+
T Consensus 97 ~d~~~~~-~-------------------------~~l~~~~-~~~~~~~~SPDG~~ia~~~-~-~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 97 YDLNKRQ-L-------------------------ITEERIP-NNTQWVTWSPVGHKLAYVW-N-NDIYVKIEPNLPSYRI 147 (470)
T ss_dssp EETTTTE-E-------------------------CCSSCCC-TTEEEEEECSSTTCEEEEE-T-TEEEEESSTTSCCEEC
T ss_pred EECCCCc-c-------------------------cccccCC-ccccccccccCcceeeEee-c-ccceEEECCCCceeee
Confidence 9988332 1 1233343 6899999999999999964 5 4899999998876544
Q ss_pred ecC-------------------CCCeeEEEEcCCCCEEEEEecC
Q 013338 251 RRG-------------------FGGLSILKWSPTGDYFFAAKFD 275 (445)
Q Consensus 251 ~~~-------------------~~~v~~~~~sp~g~~l~~~~~d 275 (445)
... .+....+.|||||++|+....|
T Consensus 148 t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred eeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 321 1234568899999999987654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.56 E-value=5.4e-11 Score=107.36 Aligned_cols=296 Identities=10% Similarity=0.054 Sum_probs=169.3
Q ss_pred EEEEEC--CCeEEEEEccCCCCccee--EEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccc
Q 013338 114 VAFISG--STQVIVRDYEDSEGKDAC--ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF 189 (445)
Q Consensus 114 la~~~~--d~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 189 (445)
|+.|+. .+.|.++.++..+++... .........+..|+|+|+++.|+++ ..+.+..|.+...........
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-~~~~~~~~~i~~~~~~~~~~~----- 78 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-AMKKWSSFAVKSPTEIVHEAS----- 78 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-EBTEEEEEEEEETTEEEEEEE-----
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-eCCcEEEEEEeCCCCeEEEee-----
Confidence 556753 557888888766655322 2222355567789999997666665 456788887763322211110
Q ss_pred cccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEE--EEEecCCeEEEEEccCC-------------Cce-----e
Q 013338 190 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA--SASYESSSFTIWDVAQG-------------LGT-----P 249 (445)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~d~g~v~vwd~~~~-------------~~~-----~ 249 (445)
.. .......++++++++.++ ++....+.|..+.+... ... .
T Consensus 79 -----------------~~--~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (365)
T d1jofa_ 79 -----------------HP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY 139 (365)
T ss_dssp -----------------EE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred -----------------ec--CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCc
Confidence 00 113345666777776433 33222234444433211 110 0
Q ss_pred eecCCCCeeEEEEcCCCCEEEEEec-CCeEEEEeCCCCC-cc-----cccCCCCCeeEEEECCCCCeEEEEEcCCceEEE
Q 013338 250 IRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT-SE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS 322 (445)
Q Consensus 250 ~~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~-~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~ 322 (445)
.......+.++.|+|+|++++++.. ...|++|+..... .. .........+.++|+|+++++++....+..+..
T Consensus 140 ~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v 219 (365)
T d1jofa_ 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEE
Confidence 1112345789999999999887764 4578888765432 21 122345678899999999999998888888888
Q ss_pred EEeccCCCCcccc--ccCcc---cc-ccccccCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC-Ceeeee
Q 013338 323 IHFASKPPSLDAH--LLPVD---LP-DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLS 394 (445)
Q Consensus 323 ~~~~~~~~~~~~~--~~~~~---~~-~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~-~~~~~~ 394 (445)
+++.......... ..+.. .. .......+. ....+.++|||++|+++..+.+......|..|++... .+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~ 299 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence 8764332110000 00000 00 000111112 4678899999999998865432222245778887643 322222
Q ss_pred eeeeeeCCCCCCCceeEee-cCCCCCCCeEEEEecCeeeEeeeee
Q 013338 395 LIGFIRGPGDNPKPVAFSF-HDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 395 ~~~~~~~~~~~v~~v~~sp-dg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.+...........+++|+| +|++ ++..+..+|.|.+|.+.
T Consensus 300 ~~~~~~~~G~~p~~i~~~p~~G~~----l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 300 FLSPTPTSGGHSNAVSPCPWSDEW----MAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTE----EEEECSSSCEEEEEEEE
T ss_pred EeeEEEcCCCCccEEEecCCCCCE----EEEEeCCCCeEEEEEEe
Confidence 2222233455678899998 7776 45555788999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=6.6e-13 Score=124.84 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCeeEEEEccCCCEEEEEEC---------CCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 100 VDLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
..|.++.|||||++||+++. ++.+.|||+.. ++. ..+ ..+...+..+.|||||+.++.. .++.+.+
T Consensus 62 ~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~--~~~-~~l-~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~ 136 (470)
T d2bgra1 62 HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQL-ITE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYV 136 (470)
T ss_dssp SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEE-CCS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEE
T ss_pred CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC--Ccc-ccc-ccCCccccccccccCcceeeEe-ecccceE
Confidence 46899999999999998753 46778999853 432 223 4578889999999998877774 6778999
Q ss_pred EccCCCCC
Q 013338 171 WAPSYPGN 178 (445)
Q Consensus 171 w~~~~~~~ 178 (445)
|+...+..
T Consensus 137 ~~~~~g~~ 144 (470)
T d2bgra1 137 KIEPNLPS 144 (470)
T ss_dssp ESSTTSCC
T ss_pred EECCCCce
Confidence 99875543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=8.5e-14 Score=126.63 Aligned_cols=297 Identities=7% Similarity=-0.077 Sum_probs=169.0
Q ss_pred eeEEEEccCCCEEEE---EECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec----------CCcE
Q 013338 102 LQGVSWHQHKHIVAF---ISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGI 168 (445)
Q Consensus 102 v~~~~~sp~g~~la~---~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~----------dg~i 168 (445)
...++..++++.... ...++...+|-++..+++.+..+.. +.. ..++|+|||+.+++.+. ++.|
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~-~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v 98 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-AFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYV 98 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC-CCC--CcceECCCCCEEEEEcccCccccccccCCeE
Confidence 344556778875332 3456666666665566776665543 332 36899999888877642 4679
Q ss_pred EEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce
Q 013338 169 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT 248 (445)
Q Consensus 169 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~ 248 (445)
.+||..+.+....+.... ............++|+|||++|+++..+.+.+.+||+.+++..
T Consensus 99 ~v~D~~t~~~~~~i~~p~-------------------~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~ 159 (368)
T d1mdah_ 99 EVFDPVTFLPIADIELPD-------------------APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD 159 (368)
T ss_dssp EEECTTTCCEEEEEEETT-------------------SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE
T ss_pred EEEECCCCcEeeeecCCc-------------------cceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe
Confidence 999998443322221100 0000011234578999999999988765579999999998775
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-------cccCCCCCeeEEEECCCCCeEEEEEcCCceEE
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLG 321 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~ 321 (445)
.......... .+......++..+.||.+.+++....... ....+...+..+.+.+++..+... . ..+.
T Consensus 160 ~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--~~v~ 234 (368)
T d1mdah_ 160 QLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A--SSIL 234 (368)
T ss_dssp EEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S--SCCE
T ss_pred EEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-C--CCEE
Confidence 5443322211 11112345566667777777777654431 122334445667788887766533 2 2234
Q ss_pred EEEeccCCCCccccccCccccccccccC--C-CccceEEeCCCCCEEEEEEcCCCcc---cceEEEEEEccCCCeeeeee
Q 013338 322 SIHFASKPPSLDAHLLPVDLPDIVSLTG--S-QGIEKIAWDASGERLAVSYKGGDDI---YKGLIAIYDARRTPLISLSL 395 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~~~~~sp~g~~l~~~s~d~~d~---~d~~i~vwd~~~~~~~~~~~ 395 (445)
.+.+....... .............. . .....++++|++..++....++... ....|.+||..+++.+..
T Consensus 235 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~-- 309 (368)
T d1mdah_ 235 QGDIPAAGATM---KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-- 309 (368)
T ss_dssp EEECCSSCCEE---ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC--
T ss_pred EEeecCCceEE---EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE--
Confidence 44432211000 00001111111111 1 1346788999998887765432210 125799999999876632
Q ss_pred eeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 396 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 396 ~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
+. +...+.+++|||||+. -+++.+..++.|.+|+.
T Consensus 310 ---~~-~~~~~~~~a~spDG~~---~ly~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 310 ---IS-NGHDSDAIIAAQDGAS---DNYANSAGTEVLDIYDA 344 (368)
T ss_dssp ---CE-EEEEECEEEECCSSSC---EEEEEETTTTEEEEEES
T ss_pred ---ec-CCCceeEEEECCCCCE---EEEEEeCCCCeEEEEEC
Confidence 22 2345789999999874 13445556788888875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.51 E-value=1.8e-11 Score=110.62 Aligned_cols=266 Identities=10% Similarity=0.013 Sum_probs=153.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec---CCcEEEEccCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPG 177 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~---dg~i~vw~~~~~~ 177 (445)
.+.-|+|+|++++|+++. .+.+..|.++.. +................++++++++.++.... .+.+..+.+....
T Consensus 41 ~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~-~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~ 118 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAA-MKKWSSFAVKSP-TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEECTTSSEEEEEE-BTEEEEEEEEET-TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCEEEEcCCCCEEEEEe-CCcEEEEEEeCC-CCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC
Confidence 356799999999998765 456888888743 33332222223445677899999776544332 2566665544222
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCcee------ee
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP------IR 251 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~------~~ 251 (445)
....+.... . ..................+.++.|+|||++++++......|.+|+........ ..
T Consensus 119 ~~~~~~~~~--~-------~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T d1jofa_ 119 GYGNVFSVS--E-------TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp CEEEEEEEC--T-------TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred CcceeEeee--e-------cceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec
Confidence 111110000 0 00000111111111224688999999999999887543488888865432211 11
Q ss_pred cCCCCeeEEEEcCCCCEEEEEe-cCCeEEEEeCCCCCcccc--------c------------CCCCCeeEEEECCCCCeE
Q 013338 252 RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPW--------S------------STSGFVTGATWDPEGRMI 310 (445)
Q Consensus 252 ~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~--------~------------~~~~~v~~~~~sp~~~~l 310 (445)
........++|+|+++++.+.. .+++|.+|++...+.... . ........+.++|+|++|
T Consensus 190 ~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 269 (365)
T d1jofa_ 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEE
Confidence 2346789999999999886554 578999999877653110 0 111234578999999999
Q ss_pred EEEEcCCce-----EEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCC-CCCEEEEEEcCCCcccceEEEEE
Q 013338 311 LLAFAGSLT-----LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIY 383 (445)
Q Consensus 311 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-~g~~l~~~s~d~~d~~d~~i~vw 383 (445)
+++...+.. +..+++..... +. ....+....... ....++++| +|++|+++..++ +.|.+|
T Consensus 270 yvsnr~~~~~~~~~i~~~~~~~~g~-----~~--~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s-----~~v~v~ 337 (365)
T d1jofa_ 270 FASSRANKFELQGYIAGFKLRDCGS-----IE--KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE-----GWLEIY 337 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSC-----EE--EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS-----CEEEEE
T ss_pred EEEcccCCCccceEEEEEEecCCCc-----ee--eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC-----CeEEEE
Confidence 977543221 33333321100 00 000111111122 568899998 899999886553 889999
Q ss_pred EccCCC
Q 013338 384 DARRTP 389 (445)
Q Consensus 384 d~~~~~ 389 (445)
+++...
T Consensus 338 ~~~~~~ 343 (365)
T d1jofa_ 338 RWKDEF 343 (365)
T ss_dssp EEETTE
T ss_pred EEeCCc
Confidence 987543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.44 E-value=7.4e-12 Score=113.54 Aligned_cols=238 Identities=10% Similarity=-0.074 Sum_probs=135.7
Q ss_pred eEEEEccCCCEEEEEE----------CCCeEEEEEccCCCCcceeEEecC------CCCCeeEEEECcCCCcEEEEec-C
Q 013338 103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSEGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC-K 165 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~----------~d~~i~iw~~~~~~~~~~~~~~~~------~~~~v~~l~~spd~~~l~~~~~-d 165 (445)
..++|+|||+.|++.+ .|+.|++||.. +++....+... .......++|+|||++++++.. +
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~--t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~ 145 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECC--CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence 3689999999999865 36779999985 45554444221 1223456999999999887764 5
Q ss_pred CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC-CCCeEEEEEecCCeEEEEEccC
Q 013338 166 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ 244 (445)
Q Consensus 166 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~g~v~vwd~~~ 244 (445)
+.+.+||+...+... .+..+. ... +.| ....++..+.| |.+.++++..
T Consensus 146 ~~v~~~d~~~~~~~~-------------------------~~~~~~-~~~----~~~~~~~~~v~~~~D-g~~~~~~~~~ 194 (368)
T d1mdah_ 146 SAAAGLSVPGASDDQ-------------------------LTKSAS-CFH----IHPGAAATHYLGSCP-ASLAASDLAA 194 (368)
T ss_dssp SCEEEEEETTTEEEE-------------------------EEECSS-CCC----CEEEETTEEECCCCT-TSCEEEECCS
T ss_pred CeEEEEECCCCcEeE-------------------------EeeccC-cce----EccCCCceEEEEcCC-CCEEEEEecC
Confidence 999999998432222 222221 000 111 11223333444 4555555543
Q ss_pred CCcee-------eecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-------------CCCCCeeEEEEC
Q 013338 245 GLGTP-------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------------STSGFVTGATWD 304 (445)
Q Consensus 245 ~~~~~-------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~v~~~~~s 304 (445)
..... ...+...+..+.+.+++..+.+. .+.+++++....+...+. ........++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 272 (368)
T d1mdah_ 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred CceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEc
Confidence 32211 11223445567777777655543 455666666655432111 011223457889
Q ss_pred CCCCeEEEEEcCCc-----eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCE-EEEEE-cCCCcccc
Q 013338 305 PEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSY-KGGDDIYK 377 (445)
Q Consensus 305 p~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~s-~d~~d~~d 377 (445)
+++..+++...... ....+.+++.. +.+.+..+.....+.+++|+|||+. |++.+ .+
T Consensus 273 ~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~----------t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~------ 336 (368)
T d1mdah_ 273 KNTDGIMILTVEHSRSCLAAAENTSSVTAS----------VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT------ 336 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESS----------SCCEEECCEEEEEECEEEECCSSSCEEEEEETTT------
T ss_pred CCCCEEEEEecCCCceeecCCceEEEEECC----------CCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC------
Confidence 99988776543221 11223333322 3444555544447899999999974 33333 33
Q ss_pred eEEEEEEccCCCee
Q 013338 378 GLIAIYDARRTPLI 391 (445)
Q Consensus 378 ~~i~vwd~~~~~~~ 391 (445)
+.|++||..+++.+
T Consensus 337 ~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 337 EVLDIYDAASDQDQ 350 (368)
T ss_dssp TEEEEEESSSCEEE
T ss_pred CeEEEEECCCCCEE
Confidence 89999999998876
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.4e-10 Score=98.33 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=135.9
Q ss_pred CCeeEEEEccCCCEEEEEECC-CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCC
Q 013338 100 VDLQGVSWHQHKHIVAFISGS-TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG 177 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~ 177 (445)
..+.+.+|||||+.||..... +...+|......+.. ..+ ..+........|+|+|..++..... +...++......
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~ 116 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 116 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred CceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEE-eeeecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence 357789999999999987633 333334433333333 333 2467788999999999888877654 333333322111
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCC--eEEEEEccCCCceeeecCCC
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFG 255 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g--~v~vwd~~~~~~~~~~~~~~ 255 (445)
... .. .... ........++++++.++..+...| .|.+.++..+....+.....
T Consensus 117 ~~~-----------------------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 171 (269)
T d2hqsa1 117 GQI-----------------------RQ-VTDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS 171 (269)
T ss_dssp CCE-----------------------EE-CCCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred ccc-----------------------ee-eeec-cccccccccccccccceecccccCCceEeeeecccccceeeecccc
Confidence 100 00 1111 234456678888887776665434 56666777776666666677
Q ss_pred CeeEEEEcCCCCEEEEEecCC---eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCc
Q 013338 256 GLSILKWSPTGDYFFAAKFDG---TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 332 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (445)
......|+|+++.++..+.++ .+.+.+...+... +...........|+|||+.|+......+ ...+.+++.
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~p~~SPDG~~i~f~s~~~~-~~~l~~~~~---- 245 (269)
T d2hqsa1 172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGM-GSVLNLVST---- 245 (269)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETT-EEEEEEEET----
T ss_pred cccccccccccceeEEEeecCCceeeeEeecccccce-EeecCccccceEECCCCCEEEEEEcCCC-CcEEEEEEC----
Confidence 788899999999998776654 5666676665543 3344556678899999999986644322 223333222
Q ss_pred cccccCccccccccccCCC-ccceEEeCC
Q 013338 333 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDA 360 (445)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~-~v~~~~~sp 360 (445)
++.....+.... .+...+|||
T Consensus 246 -------dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 246 -------DGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp -------TSCCEEECCCSSSEEEEEEECC
T ss_pred -------CCCCEEEEeCCCCcEEeEEeCC
Confidence 333344444444 677889998
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.37 E-value=2e-11 Score=110.59 Aligned_cols=258 Identities=13% Similarity=0.030 Sum_probs=150.0
Q ss_pred eeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEE-ecCCcEEE---------
Q 013338 102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICI--------- 170 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~-~~dg~i~v--------- 170 (445)
......+|||++|++.. .++.|.++|++ +.+....+...+...+..++|+|+++.+++. .....+.+
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~--t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRLD--IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETT--TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred cceecccCCCCEEEEEcCCCCEEEEEECC--CCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 44555689999997665 78899999985 4666565555677889999999998865443 33333322
Q ss_pred ---------EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-------
Q 013338 171 ---------WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------- 234 (445)
Q Consensus 171 ---------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------- 234 (445)
+|..+.. ....+.. ...+..+.|+|+|+++++.+.+.
T Consensus 152 ~~~~~~~~~iD~~t~~-------------------------v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id 204 (441)
T d1qnia2 152 DNSYTMFTAIDAETMD-------------------------VAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLA 204 (441)
T ss_dssp GGEEEEEEEEETTTCS-------------------------EEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred ccccceEEeecCccce-------------------------eeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEe
Confidence 2222111 1111111 13456777777777777665432
Q ss_pred ---------------------------------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEE-EEecCCeEEE
Q 013338 235 ---------------------------------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYL 280 (445)
Q Consensus 235 ---------------------------------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~i 280 (445)
+.+.+++...........-......+.++|||++++ ++..+++|.+
T Consensus 205 ~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv 284 (441)
T d1qnia2 205 GTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSV 284 (441)
T ss_dssp HHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEE
T ss_pred ccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEE
Confidence 233344333333333333345578899999999875 5567899999
Q ss_pred EeCCCCCc---------cccc---CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccc-ccCc-ccccccc
Q 013338 281 WETNTWTS---------EPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH-LLPV-DLPDIVS 346 (445)
Q Consensus 281 wd~~~~~~---------~~~~---~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~ 346 (445)
||+++.+. ..+. ...-.....+|+++|.. +++..-+..+..|.+.......... ...+ ..-.+..
T Consensus 285 ~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~-yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y 363 (441)
T d1qnia2 285 IAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA-YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQY 363 (441)
T ss_dssp EEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE-EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred EEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE-EEcccccceEEEeccchhhhhhccCCCceeEecccccc
Confidence 99875321 0011 11112344589998854 4455666777777753110000000 0000 0011122
Q ss_pred ccCCC-ccceEEeCCCCCEEEEEEcCCCccc-------ceEEEEEEccCCC
Q 013338 347 LTGSQ-GIEKIAWDASGERLAVSYKGGDDIY-------KGLIAIYDARRTP 389 (445)
Q Consensus 347 ~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~-------d~~i~vwd~~~~~ 389 (445)
..+|. .+.+.+++|||+||++++.-+-|++ -..-.|.|+...+
T Consensus 364 ~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~ 414 (441)
T d1qnia2 364 QPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEE 414 (441)
T ss_dssp CEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred CCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCe
Confidence 25777 7889999999999999965444332 1356778886443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.4e-09 Score=101.01 Aligned_cols=298 Identities=13% Similarity=0.126 Sum_probs=156.9
Q ss_pred CCeeEEEEccCCCEEEEEE---------CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEE
Q 013338 100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 170 (445)
Q Consensus 100 ~~v~~~~~sp~g~~la~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~v 170 (445)
..+....|||||++|+... ..+.+.|+|+...+.+.+... ......+....|||||+.++.+. ++.+.+
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~-~~~~~~l~~~~wSPDG~~iafv~-~~nl~~ 138 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPP-EVSNAKLQYAGWGPKGQQLIFIF-ENNIYY 138 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCT-TCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCc-cCCccccceeeeccCCceEEEEe-cceEEE
Confidence 4577889999999988764 346788889865332222111 12344567789999998887765 667777
Q ss_pred EccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeE-------------
Q 013338 171 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF------------- 237 (445)
Q Consensus 171 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v------------- 237 (445)
.+...+...+....+....+.. ....|. ........-.++-|||||++||+...|...|
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~n----G~~d~v----yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~ 210 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYN----GLSDWL----YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY 210 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEE----EECCHH----HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred EecCCCceEEEecccCcceeec----cccchh----hhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccc
Confidence 7776443332222221000000 000000 0000012235778999999999886554333
Q ss_pred --------------------EEEEccCCCceeeec-------CCCCeeEEEEcCCCCEEEEEec-C---CeEEEEeCCCC
Q 013338 238 --------------------TIWDVAQGLGTPIRR-------GFGGLSILKWSPTGDYFFAAKF-D---GTFYLWETNTW 286 (445)
Q Consensus 238 --------------------~vwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~~~-d---g~v~iwd~~~~ 286 (445)
.++|+.++....... ....+..+.|+|+++.++.... + ..|.++|..++
T Consensus 211 p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg 290 (465)
T d1xfda1 211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG 290 (465)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred ceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence 344444332211110 1123677899999886665432 2 26889999999
Q ss_pred Cccccc--CCCCCe----eEEEECCCCCeEEE--EEcCCce--EEEEEeccCCCCccccccCccccccccccCCC-ccce
Q 013338 287 TSEPWS--STSGFV----TGATWDPEGRMILL--AFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK 355 (445)
Q Consensus 287 ~~~~~~--~~~~~v----~~~~~sp~~~~l~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 355 (445)
++..+. .....| ....|+++|+.++. ....++. .+.+.+..... ......+..+.... .|..
T Consensus 291 ~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~-------~~~~~~~~~LT~G~w~V~~ 363 (465)
T d1xfda1 291 VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP-------NSSNDNIQSITSGDWDVTK 363 (465)
T ss_dssp CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC-------CSSSCCCCBSCCSSSCEEE
T ss_pred cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc-------cCCCceeEEeccCCceEEE
Confidence 875432 122222 34689999986543 2333332 33333321110 11233344444444 5666
Q ss_pred E-EeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCC
Q 013338 356 I-AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 417 (445)
Q Consensus 356 ~-~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~ 417 (445)
+ +|+++++.++..+...+- ....|+--++..+... .++...........++.|||+|+|
T Consensus 364 i~~~d~~~~~vyF~a~~~~p-~~~hly~v~l~g~~~~--~~lt~~~~~~~~~~~~~~S~~~~y 423 (465)
T d1xfda1 364 ILAYDEKGNKIYFLSTEDLP-RRRQLYSANTVGNFNR--QCLSCDLVENCTYFSASFSHSMDF 423 (465)
T ss_dssp EEEEETTTTEEEEEESSSCT-TCCEEEEECSSTTCCC--BCSSTTSSSSCCCCEEEECTTSSE
T ss_pred EEEEcCCCCEEEEEEeCCCC-CceEEEEEECCCCCcc--eeeccccCCCCCEEEEEECCCCCE
Confidence 5 699988887765432211 1123333344433221 111111123345679999999997
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.15 E-value=9.3e-09 Score=89.83 Aligned_cols=226 Identities=14% Similarity=0.078 Sum_probs=140.6
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcc
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 180 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~ 180 (445)
.+..++++|||+++++...+++|..|+. +++.... ......+.+++|++||+.+++...++.+..|+........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p---~g~~~~~--~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~ 103 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITP---DGNQQIH--ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 103 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT---TCCEEEE--EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeC---CCCEEEE--EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence 3678999999999998888998877764 3443332 2366789999999998766665566788777765221111
Q ss_pred ccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec--------
Q 013338 181 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-------- 252 (445)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~-------- 252 (445)
..+..... ......+++.++++++++-+.+ +.+..++...+.......
T Consensus 104 ---------------------~~~~~~~~--~~~~n~i~~~~~g~~~v~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~ 159 (302)
T d2p4oa1 104 ---------------------ETLLTLPD--AIFLNGITPLSDTQYLTADSYR-GAIWLIDVVQPSGSIWLEHPMLARSN 159 (302)
T ss_dssp ---------------------EEEEECTT--CSCEEEEEESSSSEEEEEETTT-TEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred ---------------------eeccccCC--ccccceeEEccCCCEEeecccc-ccceeeeccCCcceeEecCCccceee
Confidence 11111111 2567899999999887776666 688888877664322111
Q ss_pred ---CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 253 ---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 253 ---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
.......+.++. +..+++.+..+.|+.++........ ..........++++++|++.+ +....+.+..+..
T Consensus 160 ~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v-a~~~~~~V~~i~p- 236 (302)
T d2p4oa1 160 SESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIAP- 236 (302)
T ss_dssp TTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEECT-
T ss_pred ccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE-EEcCCCcEEEECC-
Confidence 123455666653 3345566778899999887654321 112234467899999998655 4333444444432
Q ss_pred cCCCCccccccCccccc--cccccCCC-ccceEEe---CCCCCEEEEEEcC
Q 013338 327 SKPPSLDAHLLPVDLPD--IVSLTGSQ-GIEKIAW---DASGERLAVSYKG 371 (445)
Q Consensus 327 ~~~~~~~~~~~~~~~~~--~~~~~~~~-~v~~~~~---sp~g~~l~~~s~d 371 (445)
.++. +....... ..++++| ++|++.|+.++..
T Consensus 237 -------------~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 237 -------------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp -------------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -------------CCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 1111 22222222 6789999 6788988876654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.15 E-value=4.7e-09 Score=91.80 Aligned_cols=221 Identities=15% Similarity=0.142 Sum_probs=137.7
Q ss_pred CCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
..+..++++|||+.+++...+++|..|+.. +.... +... ...+.+++|+++|
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~~-------------------------~~~~-~~~~~gla~~~dG 79 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQI-------------------------HATV-EGKVSGLAFTSNG 79 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEE-------------------------EEEC-SSEEEEEEECTTS
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEEE-------------------------EEcC-CCCcceEEEcCCC
Confidence 357889999997655554556877777754 21111 1112 2678999999999
Q ss_pred CeEEEEEecCCeEEEEEccCCCc--eeee--cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccc---------c
Q 013338 225 RYLASASYESSSFTIWDVAQGLG--TPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---------W 291 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~--~~~~--~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---------~ 291 (445)
+++++...+ +.+..++...... ..+. ......+.+++.++++++++.+.++.++.+|...+.... .
T Consensus 80 ~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 158 (302)
T d2p4oa1 80 DLVATGWNA-DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 158 (302)
T ss_dssp CEEEEEECT-TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred CeEEEecCC-ceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCcccee
Confidence 987777666 5888888765433 2222 234668899999999999988889999999988765321 1
Q ss_pred c--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEE
Q 013338 292 S--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY 369 (445)
Q Consensus 292 ~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s 369 (445)
. ........+.+ ++..++.+......++.+...... .......+........++++++|+++++..
T Consensus 159 ~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~pdgia~d~dG~l~va~~ 226 (302)
T d2p4oa1 159 NSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTD----------KPGEPEIFVEQTNIDDFAFDVEGNLYGATH 226 (302)
T ss_dssp STTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTS----------CBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred eccCcccccccccc--cCCceeeecCCCCeEEeccccccc----------cccccccccCCCCCcceEECCCCCEEEEEc
Confidence 1 11223455555 456677676666767666653221 001111111222578899999999776655
Q ss_pred cCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeE---eecCC
Q 013338 370 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF---SFHDK 416 (445)
Q Consensus 370 ~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~---spdg~ 416 (445)
.+ +.|..++....... +.........+++++| ++|++
T Consensus 227 ~~------~~V~~i~p~G~~~~----~~~~~~~~~~pt~vafg~~~~D~~ 266 (302)
T d2p4oa1 227 IY------NSVVRIAPDRSTTI----IAQAEQGVIGSTAVAFGQTEGDCT 266 (302)
T ss_dssp TT------CCEEEECTTCCEEE----EECGGGTCTTEEEEEECCSTTTTT
T ss_pred CC------CcEEEECCCCCEEE----EEecCCCCCCceEEEEcCCCCCCC
Confidence 55 78888877643211 1122223345678999 55655
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.13 E-value=3.4e-08 Score=84.12 Aligned_cols=232 Identities=9% Similarity=0.003 Sum_probs=137.6
Q ss_pred eeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCc
Q 013338 102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA 179 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~ 179 (445)
-..++++++|...++.. ..+.+..++.. +.........-......+++++++. ++++... +.+++++-...
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~--- 88 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATG---STGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNN--- 88 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC-------CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSC---
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCC---CceEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccc---
Confidence 46899999999766544 45666666543 2111222122233567899999964 5555544 45555443311
Q ss_pred cccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCee
Q 013338 180 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS 258 (445)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~ 258 (445)
..+. ...+ .....+++++++++++++-... ..+..++.......... .......
T Consensus 89 ~~~~----------------------~~~~--~~~p~~iavd~~g~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ 143 (260)
T d1rwia_ 89 QTVL----------------------PFDG--LNYPEGLAVDTQGAVYVADRGN-NRVVKLAAGSKTQTVLPFTGLNDPD 143 (260)
T ss_dssp CEEC----------------------CCCS--CCSEEEEEECTTCCEEEEEGGG-TEEEEECTTCSSCEECCCCSCCSCC
T ss_pred eeee----------------------eeee--eeecccccccccceeEeecccc-ccccccccccceeeeeeecccCCcc
Confidence 1110 0111 2467899999999876655444 47777776655443322 2345678
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcccccc
Q 013338 259 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL 337 (445)
Q Consensus 259 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (445)
.++++++|+.+++...++.|..+|.+......+. ........+++.++|++++ +......+..+..
T Consensus 144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~v-sd~~~~~i~~~~~------------ 210 (260)
T d1rwia_ 144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLA------------ 210 (260)
T ss_dssp EEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTTEEEEECT------------
T ss_pred eeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeee-eecCCCEEEEEeC------------
Confidence 8999999998888888899999998876554433 4445678999999997655 4443444444321
Q ss_pred CccccccccccCC--CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 338 PVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 338 ~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.......+... .....|+++++|.++++-..+ ++|+.++..
T Consensus 211 --~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~------~rI~~i~~~ 253 (260)
T d1rwia_ 211 --GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSL 253 (260)
T ss_dssp --TCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG------TEEEEECCC
T ss_pred --CCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC------CEEEEEeCC
Confidence 11111112111 256899999999866653333 666655543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=5.4e-08 Score=83.74 Aligned_cols=235 Identities=11% Similarity=0.095 Sum_probs=147.8
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-----CCCCCeeEEEECcCCCcEEEEec--CCcEEEEccC
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPS 174 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~l~~spd~~~l~~~~~--dg~i~vw~~~ 174 (445)
-..++++++|+++++-...+.|++|+. +|+.+..+.. +.......+++.++....++... ++.|.+++..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~---~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDK---EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECT---TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeC---CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 478999999998887778889999985 3655544421 11123455666655444444433 3566666654
Q ss_pred CCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceee--ec
Q 013338 175 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RR 252 (445)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~--~~ 252 (445)
+. ....+..........+++.++|+.+++.... +.+.+++........+ ..
T Consensus 102 --g~------------------------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~-~~~~~~~~~g~~~~~~g~~~ 154 (279)
T d1q7fa_ 102 --GQ------------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKV-MRVIIFDQNGNVLHKFGCSK 154 (279)
T ss_dssp --SC------------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTT-TEEEEECTTSCEEEEEECTT
T ss_pred --cc------------------------ceeecCCCcccccceeccccCCcEEEEeecc-ceeeEeccCCceeecccccc
Confidence 11 1112222222567789999999877766555 5888888654322222 23
Q ss_pred CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCC
Q 013338 253 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP 330 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (445)
+......+++.++++.+++....+.|++||........+- +.......+++.++|+.+++-.... ..+.+.+.
T Consensus 155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~---~~v~~f~~-- 229 (279)
T d1q7fa_ 155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN---FNLTIFTQ-- 229 (279)
T ss_dssp TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS---CEEEEECT--
T ss_pred cccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCC---cEEEEECC--
Confidence 4567888999999998888888999999998765443332 3445678999999998666432222 22333332
Q ss_pred CccccccCccccccccccCCC---ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccC
Q 013338 331 SLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR 387 (445)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~ 387 (445)
+++.+..+.... ....+++.|||++++ +..+ ++|++|....
T Consensus 230 ---------~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n------~~v~~fr~~~ 273 (279)
T d1q7fa_ 230 ---------DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKD------YRLYIYRYVQ 273 (279)
T ss_dssp ---------TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETT------TEEEEEECSC
T ss_pred ---------CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCC------CeEEEEEeee
Confidence 333333332211 478899999997554 4455 8899999875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=1.8e-08 Score=85.93 Aligned_cols=236 Identities=11% Similarity=0.026 Sum_probs=141.0
Q ss_pred CCeeEEEECcCCCcEEEEecC-CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC
Q 013338 145 RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 223 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 223 (445)
-...+|+++++|..+++.... +.+..++......... ...+ ......++++++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------------~~~~--~~~p~gvav~~~ 67 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------------PFNG--LYQPQGLAVDGA 67 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------------CCCS--CCSCCCEEECTT
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------------ccCC--ccCceEEEEcCC
Confidence 456899999997655554443 6677766552211110 0111 135678899999
Q ss_pred CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-CCCCCeeEEE
Q 013338 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGAT 302 (445)
Q Consensus 224 ~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~ 302 (445)
++.+++. ..++.+++++..+............+.++++.++++++++-..+..+..++.......... ........++
T Consensus 68 g~i~v~d-~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 68 GTVYVTD-FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp CCEEEEE-TTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred CCEEEee-eeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceee
Confidence 9865554 4434666655444433333333467899999999998887777778888887765543222 2234567899
Q ss_pred ECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc-CC-CccceEEeCCCCCEEEEEEcCCCcccceEE
Q 013338 303 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLI 380 (445)
Q Consensus 303 ~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i 380 (445)
++++++.++ +......+..+... ......+. .. .....++++++|+++++.... +.|
T Consensus 147 ~~~~g~~~v-~~~~~~~i~~~d~~--------------~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~------~~i 205 (260)
T d1rwia_ 147 VDNSGNVYV-TDTDNNRVVKLEAE--------------SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQV 205 (260)
T ss_dssp ECTTCCEEE-EEGGGTEEEEECTT--------------TCCEEECCCSSCCSEEEEEECTTCCEEEEETTT------TEE
T ss_pred ecCCCCEee-eccccccccccccc--------------cceeeeeeccccCCCccceeeeeeeeeeeecCC------CEE
Confidence 999998655 43333444444321 11111221 11 256889999999877765444 778
Q ss_pred EEEEccCCCeeeeeeeeeee-CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeeee
Q 013338 381 AIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF 439 (445)
Q Consensus 381 ~vwd~~~~~~~~~~~~~~~~-~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~~ 439 (445)
..++....... .+. ..-.....++++++|+ ++...+.+++|..+.-+-
T Consensus 206 ~~~~~~~~~~~------~~~~~~~~~P~~i~~d~~g~-----l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 206 VKLLAGSTTST------VLPFTGLNTPLAVAVDSDRT-----VYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp EEECTTCSCCE------ECCCCSCCCEEEEEECTTCC-----EEEEEGGGTEEEEECCCG
T ss_pred EEEeCCCCeEE------EEccCCCCCeEEEEEeCCCC-----EEEEECCCCEEEEEeCCC
Confidence 88876643322 111 1223457899998876 455678888888765543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.8e-09 Score=97.98 Aligned_cols=195 Identities=12% Similarity=0.142 Sum_probs=121.0
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec--CCCCCeeEEEECcCCCcEEEEec---------CCcEEEEcc
Q 013338 105 VSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGC---------KGGICIWAP 173 (445)
Q Consensus 105 ~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~v~~l~~spd~~~l~~~~~---------dg~i~vw~~ 173 (445)
..|.+++.++. -..+|.+.+|++... +....+.. -..-.+....||||++.++.... .+.+.++|+
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~ 98 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred CEEeCCCcEEE-EeCCCcEEEEECCCC--CEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence 35888887665 356788999998653 33222221 12336778899999888777642 356778888
Q ss_pred CCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC
Q 013338 174 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~ 253 (445)
..+.. ..+.. .... ...+....|||||+.||... + +.|.+.+..++...++...
T Consensus 99 ~~~~~-~~l~~----------------------~~~~-~~~l~~~~wSPDG~~iafv~-~-~nl~~~~~~~~~~~~lt~~ 152 (465)
T d1xfda1 99 PHGDP-QSLDP----------------------PEVS-NAKLQYAGWGPKGQQLIFIF-E-NNIYYCAHVGKQAIRVVST 152 (465)
T ss_dssp SSCCC-EECCC----------------------TTCC-SCCCSBCCBCSSTTCEEEEE-T-TEEEEESSSSSCCEEEECC
T ss_pred cCCce-eeccC----------------------ccCC-ccccceeeeccCCceEEEEe-c-ceEEEEecCCCceEEEecc
Confidence 73322 11111 1111 24566789999999999986 4 4799998887766554432
Q ss_pred --CCC-----------------eeEEEEcCCCCEEEEEecC-C---------------------------------eEEE
Q 013338 254 --FGG-----------------LSILKWSPTGDYFFAAKFD-G---------------------------------TFYL 280 (445)
Q Consensus 254 --~~~-----------------v~~~~~sp~g~~l~~~~~d-g---------------------------------~v~i 280 (445)
.+. -..+-|||||++||....| . .+.+
T Consensus 153 g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v 232 (465)
T d1xfda1 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (465)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEE
Confidence 111 1467799999999976432 1 3566
Q ss_pred EeCCCCCcccc--c-----CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 281 WETNTWTSEPW--S-----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 281 wd~~~~~~~~~--~-----~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
+|+.++..... . .....+..+.|++++++++...+.......+.+.+.
T Consensus 233 ~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~ 287 (465)
T d1xfda1 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (465)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred EecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcC
Confidence 67665543211 1 112246788999999887776665555555555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.08 E-value=3.4e-08 Score=86.52 Aligned_cols=248 Identities=12% Similarity=0.110 Sum_probs=145.7
Q ss_pred CCeeEEEECcCCCcEEEEec-------CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeE
Q 013338 145 RDVKVLEWRPNGGRSLSVGC-------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 217 (445)
Q Consensus 145 ~~v~~l~~spd~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (445)
.....++|.++|+.+++... +++|..|+......... ... ..... ......
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~-~~~--------------------~~~~~-~g~P~G 75 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKP--------------------EVNGY-GGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE-ECC--------------------EETTE-ECCEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEE-ECC--------------------ccccC-CCccee
Confidence 34678899999765544322 25677777663221110 000 00111 134678
Q ss_pred EEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-C----CCeeEEEEcCCCCEEEEEec---------------CCe
Q 013338 218 LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-F----GGLSILKWSPTGDYFFAAKF---------------DGT 277 (445)
Q Consensus 218 ~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~----~~v~~~~~sp~g~~l~~~~~---------------dg~ 277 (445)
++|+++++.++++... ..+..++...+........ . ...+.+++.++|++.++-.. .|.
T Consensus 76 l~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~ 154 (314)
T d1pjxa_ 76 CQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCce
Confidence 9999999988888776 4788888776543322221 1 24678999999988776432 235
Q ss_pred EEEEeCCCCCcccccCCCCCeeEEEECCCCC----eEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC--
Q 013338 278 FYLWETNTWTSEPWSSTSGFVTGATWDPEGR----MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-- 351 (445)
Q Consensus 278 v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 351 (445)
|+.++.+. +...+...-...+.++|+|++. .|+++......++.+++..... +. ..+....+.+..
T Consensus 155 v~~~~~dg-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~-----~~--~~~~~~~~~~~~~~ 226 (314)
T d1pjxa_ 155 IYCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK-----IE--NKKVWGHIPGTHEG 226 (314)
T ss_dssp EEEECTTS-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE-----EE--EEEEEEECCCCSSC
T ss_pred EEEEeecC-ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc-----cc--eeeEEEEccccccc
Confidence 65555433 3322222233457889988765 5666666666677666532110 00 001111222221
Q ss_pred ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCCCCCeEEEEecCee
Q 013338 352 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF 431 (445)
Q Consensus 352 ~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~ 431 (445)
....+++..+|+..++.... +.|.+||.+.++.. ..+..+...+++++|.||++. +......+|+
T Consensus 227 ~pdGiavD~~GnlyVa~~~~------g~I~~~dp~~g~~~-----~~i~~p~~~~t~~afg~d~~~----lyVt~~~~g~ 291 (314)
T d1pjxa_ 227 GADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKT----IFVTEHENNA 291 (314)
T ss_dssp EEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSE----EEEEETTTTE
T ss_pred cceeeEEecCCcEEEEEcCC------CEEEEEeCCCCEEE-----EEEECCCCCEEEEEEeCCCCE----EEEEECCCCc
Confidence 35679999999977765555 88999998876654 234445567789999998763 2333346788
Q ss_pred eEeeeee
Q 013338 432 CCTYPLI 438 (445)
Q Consensus 432 v~~~~~~ 438 (445)
|..+++-
T Consensus 292 i~~~~~~ 298 (314)
T d1pjxa_ 292 VWKFEWQ 298 (314)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 8877653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.03 E-value=6.2e-08 Score=85.08 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=138.1
Q ss_pred CeeEEEECcCCCcEEEEe-cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCC
Q 013338 146 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 224 (445)
.+..++|.++|+ |+.+. ..+.|..|+........ .+... ......+++++||
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~-------------------------~~~~~-~~~p~gla~~~dG 93 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------------PFVSH-KANPAAIKIHKDG 93 (319)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------------EEECS-SSSEEEEEECTTS
T ss_pred CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEE-------------------------EEeCC-CCCeeEEEECCCC
Confidence 346899999975 55544 45888878765221111 11111 2567899999999
Q ss_pred CeEEEEEec---CCeEEEEEccCCCceeeecC---CCCeeEEEEcCCCCEEEEEec------CCeEEEEeCCCCCccccc
Q 013338 225 RYLASASYE---SSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 225 ~~l~~~~~d---~g~v~vwd~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~------dg~v~iwd~~~~~~~~~~ 292 (445)
+++++...+ .+.+...+............ ...++.+++.++|++.++... .+.++.++........+.
T Consensus 94 ~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~ 173 (319)
T d2dg1a1 94 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 173 (319)
T ss_dssp CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred CEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe
Confidence 877665321 13456666666555444332 345788999999987665432 234677776665554443
Q ss_pred CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCC
Q 013338 293 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 293 ~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
..-...+.++|+|+++.|+++......+..+.+....... ...................++++++|++.++...+
T Consensus 174 ~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~----~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~- 248 (319)
T d2dg1a1 174 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI----QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ- 248 (319)
T ss_dssp EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-
T ss_pred eccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee----ccccceeeeccCCccceeeeeEcCCCCEEEEEcCC-
Confidence 3334567899999999888886666677777653211000 00000001111122245689999999977776655
Q ss_pred CcccceEEEEEEccCCCeeeeeee-eeeeCCCCCCCceeEeecCC
Q 013338 373 DDIYKGLIAIYDARRTPLISLSLI-GFIRGPGDNPKPVAFSFHDK 416 (445)
Q Consensus 373 ~d~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~v~~spdg~ 416 (445)
+.|.+||- .|+++....+ ..-.++...+++++|.|++.
T Consensus 249 -----g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 249 -----GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp -----TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred -----CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence 89999996 4665422111 00113444578999988654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.01 E-value=4.9e-07 Score=79.18 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=140.3
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC--CcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d--g~i~vw~~~~~~~ 178 (445)
.+..++|.++|++.++-...+.|..|+.+ +................+++++||+.+++...+ ....++.+.....
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~---g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPE---TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTT---TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECC---CCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 45689999999977766678888777753 332233223455678999999997555443332 2333443332111
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEec-----CCeEEEEEccCCCceeeecC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRG 253 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~g~v~vwd~~~~~~~~~~~~ 253 (445)
... ...... ........+++.++|++.++.... .|.+..++...+....+...
T Consensus 118 ~~~--------------------~~~~~~--~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~ 175 (319)
T d2dg1a1 118 NLQ--------------------DIIEDL--STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN 175 (319)
T ss_dssp SCE--------------------EEECSS--SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred eee--------------------eeccCC--CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec
Confidence 100 000001 112457889999999865553211 13456566555444444444
Q ss_pred CCCeeEEEEcCCCCEEE-EEecCCeEEEEeCCCCCc--cc-------ccCCCCCeeEEEECCCCCeEEEEEcCCceEEEE
Q 013338 254 FGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS--EP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI 323 (445)
Q Consensus 254 ~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~--~~-------~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~ 323 (445)
-...+.++|+|+++.|. +-+..+.|+.||+..... .. ..........+++..+|++.++. ...+.+..+
T Consensus 176 ~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~-~~~g~V~~~ 254 (319)
T d2dg1a1 176 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM-YGQGRVLVF 254 (319)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE-ETTTEEEEE
T ss_pred cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE-cCCCEEEEE
Confidence 45678899999998765 445678999999864321 10 11112335689999999865543 333444444
Q ss_pred EeccCCCCccccccCcccccccccc------CCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 324 HFASKPPSLDAHLLPVDLPDIVSLT------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
+ . .++.+.++. ++. .+++++|.+++..+++.+.+.+....+.|+..+..
T Consensus 255 ~---p-----------~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 255 N---K-----------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp C---T-----------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred C---C-----------CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 3 1 222222221 233 57899999988877776654322222555555543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.01 E-value=2.4e-08 Score=85.83 Aligned_cols=235 Identities=12% Similarity=0.097 Sum_probs=119.3
Q ss_pred EEccC--CCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----C--cEEEEccCCCC
Q 013338 106 SWHQH--KHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----G--GICIWAPSYPG 177 (445)
Q Consensus 106 ~~sp~--g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d----g--~i~vw~~~~~~ 177 (445)
..||| |+.+|..+ ++.|.+.+++ +++. ..++ .+.+.+...+|||||++|+..... . .|.+++....
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~--~g~~-~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g- 78 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLK--SGST-RKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG- 78 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETT--TCCE-EEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECC--CCCE-EEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC-
Confidence 46799 99999875 4556666664 4443 3343 366778999999999998877542 2 2444444421
Q ss_pred CccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-----CeEEEEEccCCCceeeec
Q 013338 178 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-----SSFTIWDVAQGLGTPIRR 252 (445)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----g~v~vwd~~~~~~~~~~~ 252 (445)
....+.... ...... ........|+|+|+.|+...... ..+...+...+.....
T Consensus 79 ~~~~lt~~~------------------~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 137 (281)
T d1k32a2 79 EIKRITYFS------------------GKSTGR-RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-- 137 (281)
T ss_dssp EEEECCCCC------------------EEEETT-EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--
T ss_pred ceEEeeecC------------------CCccCc-cccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--
Confidence 111111100 000011 13456789999999998764321 1345555554433222
Q ss_pred CCCCeeEEEEcCCCCEEEE-EecCC-----------eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcC--Cc
Q 013338 253 GFGGLSILKWSPTGDYFFA-AKFDG-----------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SL 318 (445)
Q Consensus 253 ~~~~v~~~~~sp~g~~l~~-~~~dg-----------~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~--~~ 318 (445)
....... .+.+++..++. ...+. ...+......................++++. ++..... ..
T Consensus 138 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 214 (281)
T d1k32a2 138 NLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFG 214 (281)
T ss_dssp CSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSC
T ss_pred cCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceeccccccc
Confidence 2222223 33444444333 22211 1112222222222222233334445555543 3322222 22
Q ss_pred eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 319 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.++.+++ .....+.+..+.......|+|||+.|+... + +.|+++|+.+++..
T Consensus 215 ~l~~~d~--------------~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~-~------~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 215 QIYSTDL--------------DGKDLRKHTSFTDYYPRHLNTDGRRILFSK-G------GSIYIFNPDTEKIE 266 (281)
T ss_dssp EEEEEET--------------TSCSCEECCCCCSSCEEEEEESSSCEEEEE-T------TEEEEECTTTCCEE
T ss_pred ceEEEeC--------------CCCceEEeecCCCcccccCcCCCCEEEEEe-C------CEEEEEECCCCCEE
Confidence 3333333 333344444333334457999999988754 4 67999999988765
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=6e-07 Score=78.34 Aligned_cols=194 Identities=10% Similarity=0.065 Sum_probs=121.5
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCC----CCeeEEEECcCCCcEEEEecCCc----------
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCKGG---------- 167 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~l~~spd~~~l~~~~~dg~---------- 167 (445)
-..++|.++|..|+++...+.+..++.+ +........... ...+.+++.++|..++ +...+.
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~---g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~ 148 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSM 148 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTT
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCC---CcEEEEEeccccccccCCCcEEEECCCCCEEE-ecCccCccccccccee
Confidence 4579999999988888877778777764 332222211111 1367899999965444 432221
Q ss_pred ----EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCC----eEEEEEecCCeEEE
Q 013338 168 ----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR----YLASASYESSSFTI 239 (445)
Q Consensus 168 ----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~d~g~v~v 239 (445)
-++|.+...+ ....+ .. .- ...+.++|+|++. .|+++....+.|..
T Consensus 149 ~~~~G~v~~~~~dg----------------------~~~~~--~~-~~-~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~ 202 (314)
T d1pjxa_ 149 QEKFGSIYCFTTDG----------------------QMIQV--DT-AF-QFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp SSSCEEEEEECTTS----------------------CEEEE--EE-EE-SSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred ccCCceEEEEeecC----------------------ceeEe--eC-Cc-ceeeeeEECCCCCcceeEEEEEeecccceEE
Confidence 1233222111 11111 11 11 2446889988764 46555444468999
Q ss_pred EEccCCCcee----eec----CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcc-cccCCCCCeeEEEECCCCCeE
Q 013338 240 WDVAQGLGTP----IRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMI 310 (445)
Q Consensus 240 wd~~~~~~~~----~~~----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l 310 (445)
||+....... ... .......+++..+|+..++....+.|++||.++++.. .+......+++++|.|+++.|
T Consensus 203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l 282 (314)
T d1pjxa_ 203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred eeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEE
Confidence 9876442211 111 1234678999999998888888899999999887763 334445678899999999888
Q ss_pred EEEEcCCceEEEEEe
Q 013338 311 LLAFAGSLTLGSIHF 325 (445)
Q Consensus 311 ~~~~~~~~~~~~~~~ 325 (445)
+++....+.+..+++
T Consensus 283 yVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 283 FVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEECCCCcEEEEEC
Confidence 877777777777775
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=6.8e-06 Score=70.18 Aligned_cols=240 Identities=9% Similarity=0.006 Sum_probs=139.2
Q ss_pred CeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCC-C
Q 013338 146 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-G 224 (445)
Q Consensus 146 ~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~ 224 (445)
....|+++++|..+++-..++.|++||.+ ......+.+.. .-.+. ......+++.++ +
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~-------------------~~~~~-~~~p~~~~~~~~~~ 82 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-------------------KRDSQ-LLYPNRVAVVRNSG 82 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-------------------SSTTC-BSSEEEEEEETTTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccC-------------------CCccc-cccccccccccccc
Confidence 46799999996544443445899999865 11111110000 00000 123345555444 4
Q ss_pred CeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccc--cCCCCCeeEE
Q 013338 225 RYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGA 301 (445)
Q Consensus 225 ~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~ 301 (445)
..+++....++.|.+++........+. ........+++.++|+.+++....+.+.+++........+ ..+......+
T Consensus 83 ~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i 162 (279)
T d1q7fa_ 83 DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGV 162 (279)
T ss_dssp EEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEE
T ss_pred ccceeccCCccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccccccccccee
Confidence 444444433357777776433222222 2345678899999999888888788899998765433322 3445667889
Q ss_pred EECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc--CCC-ccceEEeCCCCCEEEEEEcCCCcccce
Q 013338 302 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQ-GIEKIAWDASGERLAVSYKGGDDIYKG 378 (445)
Q Consensus 302 ~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~ 378 (445)
++.++++.+++ ......+..++. +++.+.++. +.. ....++++++|+.+++-..++ +
T Consensus 163 ~~d~~g~i~v~-d~~~~~V~~~d~--------------~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~-----~ 222 (279)
T d1q7fa_ 163 VVNDKQEIFIS-DNRAHCVKVFNY--------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN-----F 222 (279)
T ss_dssp EECSSSEEEEE-EGGGTEEEEEET--------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS-----C
T ss_pred eeccceeEEee-eccccceeeeec--------------CCceeeeecccccccCCcccccccCCeEEEEECCCC-----c
Confidence 99999876554 333344444432 223333332 122 578899999999776533221 5
Q ss_pred EEEEEEccCCCeeeeeeeeeee--CCCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeeee
Q 013338 379 LIAIYDARRTPLISLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI 438 (445)
Q Consensus 379 ~i~vwd~~~~~~~~~~~~~~~~--~~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~~ 438 (445)
.|.+|+.+ |+.+ ..+. ........|++.|||++ .|+-.+.+|.+|.+-
T Consensus 223 ~v~~f~~~-G~~~-----~~~~~~~~~~~p~~vav~~dG~l------~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 223 NLTIFTQD-GQLI-----SALESKVKHAQCFDVALMDDGSV------VLASKDYRLYIYRYV 272 (279)
T ss_dssp EEEEECTT-SCEE-----EEEEESSCCSCEEEEEEETTTEE------EEEETTTEEEEEECS
T ss_pred EEEEECCC-CCEE-----EEEeCCCCCCCEeEEEEeCCCcE------EEEeCCCeEEEEEee
Confidence 79999854 5543 1222 22335678999999863 344457888887654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=5.7e-07 Score=76.92 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=73.9
Q ss_pred EECCC--CCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec-C-----CeEEEEeCCCCCccc
Q 013338 219 SWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D-----GTFYLWETNTWTSEP 290 (445)
Q Consensus 219 ~~sp~--~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d-----g~v~iwd~~~~~~~~ 290 (445)
..||| |+.++..+ + |.|.+.|+.+++..++..+.+.+...+|||||++|+.... + ..|++++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~-~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-C-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-C-CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99998875 4 4799999999998888888888999999999999986542 2 258888998888766
Q ss_pred ccCCC-------CCeeEEEECCCCCeEEEEE
Q 013338 291 WSSTS-------GFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 291 ~~~~~-------~~v~~~~~sp~~~~l~~~~ 314 (445)
+.... .....+.|+|+|+.|+...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEE
Confidence 64332 2346788999999998753
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.56 E-value=1.2e-05 Score=69.20 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=139.9
Q ss_pred eEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCe
Q 013338 148 KVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 226 (445)
Q Consensus 148 ~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 226 (445)
-+..|++..+.|+.+.. .+.|..||...+.. ..+.. ...+.++++.++|++
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--------------------------~~~~~--~~~~~~i~~~~dg~l 72 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRK--------------------------TVHAL--PFMGSALAKISDSKQ 72 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------------------EEEEC--SSCEEEEEEEETTEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeE--------------------------EEEEC--CCCcEEEEEecCCCE
Confidence 35678876677776653 47888888762211 11111 256788999999877
Q ss_pred EEEEEecCCeEEEEEccCCCceeeecC-----CCCeeEEEEcCCCCEEEEEecC----CeEEEEeCCCCCcccccCCCCC
Q 013338 227 LASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGF 297 (445)
Q Consensus 227 l~~~~~d~g~v~vwd~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~ 297 (445)
+++ +.+ .+.++|..+++...+... ...++++.+.|+|++.++.... +.-.+|.+..++...+...-..
T Consensus 73 ~va-~~~--gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~ 149 (295)
T d2ghsa1 73 LIA-SDD--GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI 149 (295)
T ss_dssp EEE-ETT--EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS
T ss_pred EEE-EeC--ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC
Confidence 765 333 699999999887655432 2357899999999977655432 3455666666665444433445
Q ss_pred eeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCC-ccceEEeCCCCCEEEEEEcCCCccc
Q 013338 298 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY 376 (445)
Q Consensus 298 v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~ 376 (445)
.+.++|+++++.++.+......++.+++......... .........+.. ....+++..+|.+.++...+
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~-----~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~----- 219 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE----- 219 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-----
T ss_pred cceeeecCCCceEEEeecccceeeEeeeccccccccc-----ceEEEeccCcccccccceEEcCCCCEEeeeeCC-----
Confidence 6789999999998888777777777765322110000 000111122222 57889999999877766555
Q ss_pred ceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEe-ecCC
Q 013338 377 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDK 416 (445)
Q Consensus 377 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~s-pdg~ 416 (445)
+.|..||-+ ++++ ..+.-....+++++|- ||.+
T Consensus 220 -g~V~~~dp~-G~~~-----~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 220 -GAVDRYDTD-GNHI-----ARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp -TEEEEECTT-CCEE-----EEEECSCSBEEEEEEESTTSC
T ss_pred -CceEEecCC-CcEe-----eEecCCCCceEEEEEeCCCCC
Confidence 789999964 5554 2444445568899996 5544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.48 E-value=0.00022 Score=60.89 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=135.2
Q ss_pred EEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCcccc
Q 013338 104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV 182 (445)
Q Consensus 104 ~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~ 182 (445)
+..|++....|.... ..+.|.-|+.+ +++. .... ....+.++++.++| .+++++. ..+.++|...+.. .
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~--~g~~-~~~~--~~~~~~~i~~~~dg-~l~va~~-~gl~~~d~~tg~~-~-- 91 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLA--SGRK-TVHA--LPFMGSALAKISDS-KQLIASD-DGLFLRDTATGVL-T-- 91 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETT--TTEE-EEEE--CSSCEEEEEEEETT-EEEEEET-TEEEEEETTTCCE-E--
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECC--CCeE-EEEE--CCCCcEEEEEecCC-CEEEEEe-CccEEeeccccee-e--
Confidence 567887655555444 66778888864 3432 2222 45678899999985 5555554 4578888773321 1
Q ss_pred ccccccccccccCCCCCceEEEEeec-ccCCCceeEEEECCCCCeEEEEEecC---CeEEEEEccCCCceeeecCCCCee
Q 013338 183 RSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFGGLS 258 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~---g~v~vwd~~~~~~~~~~~~~~~v~ 258 (445)
.+.... ......++.+.+.|+|++.++..... +.-.+|.+..++...+...-...+
T Consensus 92 --------------------~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~N 151 (295)
T d2ghsa1 92 --------------------LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPN 151 (295)
T ss_dssp --------------------EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEE
T ss_pred --------------------EEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcc
Confidence 111111 11124678899999998766654321 245677777776665555556678
Q ss_pred EEEEcCCCCEEE-EEecCCeEEEEeCCCCCc------c---cccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccC
Q 013338 259 ILKWSPTGDYFF-AAKFDGTFYLWETNTWTS------E---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK 328 (445)
Q Consensus 259 ~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~------~---~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~ 328 (445)
.++|+++++.+. +-+..+.|+.|+++.... . ...........+++..+|++.++... .+.+..++ .
T Consensus 152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-~g~V~~~d---p 227 (295)
T d2ghsa1 152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYD---T 227 (295)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEEC---T
T ss_pred eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC-CCceEEec---C
Confidence 999999998765 445578899998754221 1 11233455788999999987664433 23333332 1
Q ss_pred CCCccccccCccccccccccCCC-ccceEEeC-CCCCEEEEEE
Q 013338 329 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD-ASGERLAVSY 369 (445)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s-p~g~~l~~~s 369 (445)
+++.+..+.-.. .+++++|- ||.+.|+..+
T Consensus 228 -----------~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 -----------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp -----------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred -----------CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 444455554443 68999995 7777776544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.39 E-value=1.6e-05 Score=69.62 Aligned_cols=231 Identities=11% Similarity=0.070 Sum_probs=126.6
Q ss_pred CCCcEEEEec-CCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECC--CCCeEEEEE
Q 013338 155 NGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASAS 231 (445)
Q Consensus 155 d~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~ 231 (445)
||+++++... +++|.+-|++.. ++.+.+.-.....+..+...+ +-.+++..+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~f-------------------------kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVM-------------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT-------------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcce-------------------------eeeEEEecCCCCCCceeecccCCCeEEEEccC
Confidence 6666666664 478888888722 222222222234566666654 444555554
Q ss_pred ecC-----------------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC-------------------
Q 013338 232 YES-----------------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------------------- 275 (445)
Q Consensus 232 ~d~-----------------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------------------- 275 (445)
... +.+.+.|..+.+......-.+....++++++|+++++.+.+
T Consensus 153 e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~ 232 (459)
T d1fwxa2 153 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV 232 (459)
T ss_dssp CSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred ccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEE
Confidence 421 24567888877665444445677889999999999887643
Q ss_pred -------------------CeEEEEeCCCCCc---ccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCcc
Q 013338 276 -------------------GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD 333 (445)
Q Consensus 276 -------------------g~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (445)
+.+.+.|.+.... ..+..-......+.++|||+++++++..+...-++++........
T Consensus 233 V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~ 312 (459)
T d1fwxa2 233 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY 312 (459)
T ss_dssp EEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred EechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc
Confidence 1233334332111 111222344667899999999999988888888888753211000
Q ss_pred ccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCC----------CeeeeeeeeeeeCCC
Q 013338 334 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT----------PLISLSLIGFIRGPG 403 (445)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~----------~~~~~~~~~~~~~~~ 403 (445)
....+ ......+....-+...-+|+..|.-..+..-| ..|.-|++... .++....+..-.||.
T Consensus 313 ~~~~~-~~~~~~e~elglgPLht~fd~~g~aytslfid------s~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~ 385 (459)
T d1fwxa2 313 ENADP-RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD------SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL 385 (459)
T ss_dssp SCC-G-GGGEEECCBCCSCEEEEEECTTSEEEEEETTT------TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred ccCCc-cccEEeecccCcCccccccCCCceEEEEeecc------ceEEEEecchhhhhhccccCCcceeccccccCCCCC
Confidence 00000 00001111111155667888888544444455 89999998532 333223332333454
Q ss_pred CCCCceeEeecCCC
Q 013338 404 DNPKPVAFSFHDKF 417 (445)
Q Consensus 404 ~~v~~v~~spdg~~ 417 (445)
....+-.-.|||+|
T Consensus 386 ~~~~g~t~~~dgk~ 399 (459)
T d1fwxa2 386 KTVMGETLDATNDW 399 (459)
T ss_dssp EETTTTSTTCCSSE
T ss_pred ccCcCCcCCCCCCE
Confidence 33333345567765
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.32 E-value=0.00029 Score=62.62 Aligned_cols=259 Identities=9% Similarity=0.011 Sum_probs=137.5
Q ss_pred eeEEEEccCCCEEEEEECCC-----------eEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC-CcEE
Q 013338 102 LQGVSWHQHKHIVAFISGST-----------QVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGIC 169 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d-g~i~ 169 (445)
+.......+|+.++.|+.+. .+.+||..+.+..........+.......++.+++..++.++.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 34555667899999888421 36789986544333333333455555677889996555555544 6899
Q ss_pred EEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecC-----CeEEEEEccC
Q 013338 170 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-----SSFTIWDVAQ 244 (445)
Q Consensus 170 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----g~v~vwd~~~ 244 (445)
+||.... .|.....+... ..-...+..+||+.++.++... ..+.+||..+
T Consensus 102 ~yd~~~~-----------------------~w~~~~~~~~~--r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 102 LYDSSSD-----------------------SWIPGPDMQVA--RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp EEEGGGT-----------------------EEEECCCCSSC--CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EecCccC-----------------------ccccccccccc--ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 9998721 33332222222 2334667778999999887532 2689999988
Q ss_pred CCceeeecCC---------------CCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc-------CCCC--CeeE
Q 013338 245 GLGTPIRRGF---------------GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSG--FVTG 300 (445)
Q Consensus 245 ~~~~~~~~~~---------------~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~--~v~~ 300 (445)
.+...+.... ..-..+...++|+.++.+...+.+.++|..+....... .... .-.+
T Consensus 157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T d1k3ia3 157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236 (387)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence 7543322100 01112333457777777777778888888776542111 0111 1122
Q ss_pred EEE-CCCCCeEEEEEcCCc-------eEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCC
Q 013338 301 ATW-DPEGRMILLAFAGSL-------TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG 372 (445)
Q Consensus 301 ~~~-sp~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~ 372 (445)
+.+ ..+++.+++++.... ......++....... .......+.....-.+....+||+.+++|+.+.
T Consensus 237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~ 310 (387)
T d1k3ia3 237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN------TVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 310 (387)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE------EEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCC------ceeeccccccccccceeeeccCCeEEEECCccc
Confidence 223 345666665543211 112222221110000 001111111111234556678999999887542
Q ss_pred Ccc-----cceEEEEEEccCCCee
Q 013338 373 DDI-----YKGLIAIYDARRTPLI 391 (445)
Q Consensus 373 ~d~-----~d~~i~vwd~~~~~~~ 391 (445)
... .-..+.+||..+.+..
T Consensus 311 ~~~~~~~~~~~~ve~Ydp~~~~W~ 334 (387)
T d1k3ia3 311 GIPFEDSTPVFTPEIYVPEQDTFY 334 (387)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CccCCCCcEeceEEEEECCCCeEE
Confidence 211 1135789999876543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=0.0011 Score=55.34 Aligned_cols=252 Identities=10% Similarity=0.011 Sum_probs=148.2
Q ss_pred CCEEEEEECCCeEEEEEccCCCCcc--eeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccc
Q 013338 111 KHIVAFISGSTQVIVRDYEDSEGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA 187 (445)
Q Consensus 111 g~~la~~~~d~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~ 187 (445)
|.+|+.+. .+.|+-..++..+... .......+...+.+|+|.+..++++.+.. .+.|+..+++.... ..+
T Consensus 1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v----- 73 (263)
T d1npea_ 1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI----- 73 (263)
T ss_dssp CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-----
T ss_pred CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEE-----
Confidence 34555544 3456666665322111 11112223445778999887677776654 47777777763222 111
Q ss_pred cccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC-CCCeeEEEEcCCC
Q 013338 188 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTG 266 (445)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~-~~~v~~~~~sp~g 266 (445)
+... -..+.++++..-+..|+.+....+.|.+.++.......+... ...+..++++|..
T Consensus 74 -------------------~~~~-~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~ 133 (263)
T d1npea_ 74 -------------------IRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133 (263)
T ss_dssp -------------------ECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred -------------------EEec-cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEeccc
Confidence 1111 146788999887777877766556999999987766555443 4678999999987
Q ss_pred CEEEEEec---CCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccc
Q 013338 267 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 267 ~~l~~~~~---dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
.++..... ...|.--+++......+. ..-.....+++.+.++.|+.+......+..+++.. .
T Consensus 134 g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g--------------~ 199 (263)
T d1npea_ 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ--------------P 199 (263)
T ss_dssp TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE--------------E
T ss_pred CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC--------------C
Confidence 77765432 234665677665543332 23345689999998888887766666676666532 1
Q ss_pred cccc-ccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeec
Q 013338 343 DIVS-LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH 414 (445)
Q Consensus 343 ~~~~-~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spd 414 (445)
.... +.+.....++++. +.+|+....+. +.|...|..+++.... ..+.......+++..++
T Consensus 200 ~~~~v~~~~~~P~~lav~--~~~lYwtd~~~-----~~I~~~~~~~g~~~~~----~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 200 GRRKVLEGLQYPFAVTSY--GKNLYYTDWKT-----NSVIAMDLAISKEMDT----FHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEEEEEECCCSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTTEEEEE----ECCSSCCCCCCEEEECS
T ss_pred CeEEEECCCCCcEEEEEE--CCEEEEEECCC-----CEEEEEECCCCccceE----ECCCCCCCcceEEEeCC
Confidence 1111 1222234567764 56676665432 7888889887765421 12233344566766554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.71 E-value=0.009 Score=49.47 Aligned_cols=194 Identities=5% Similarity=-0.045 Sum_probs=121.6
Q ss_pred CeeEEEEccCCCEEEEEE-CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCC
Q 013338 101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN 178 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~ 178 (445)
.+.+++|.+..++|.... .++.|+..+++. .....+.......+.++++..-++.|+.+.. .+.|.+.+++....
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g---~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG---GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSS---CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEccc---CCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 467789998888777665 567777777652 2233333333456889999876677776655 47888888772221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCe--EEEEEccCCCceeeec-CCC
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--FTIWDVAQGLGTPIRR-GFG 255 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~--v~vwd~~~~~~~~~~~-~~~ 255 (445)
..+ +... ...+..++++|...+++......+. |..-++.......+.. .-.
T Consensus 114 -~~l------------------------~~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~ 167 (263)
T d1npea_ 114 -RVL------------------------FDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167 (263)
T ss_dssp -EEE------------------------ECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCS
T ss_pred -EEE------------------------eccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccc
Confidence 111 1111 2467899999987777765433223 4444565554444433 346
Q ss_pred CeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEe
Q 013338 256 GLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF 325 (445)
Q Consensus 256 ~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~ 325 (445)
....+++++.++.|..+ ...+.|...|+.......+........++++. +.+|+.+......+..++.
T Consensus 168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence 77899999888877655 45778999999876654333222345577775 5667766555566666654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.50 E-value=0.0015 Score=57.08 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=100.4
Q ss_pred EEEEC---CCCCeEEEEEecCCeEEEEEccCCCceeee--cCCCCeeEEEEcC--CCCEEEEEecC--------------
Q 013338 217 ALSWG---PDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSP--TGDYFFAAKFD-------------- 275 (445)
Q Consensus 217 ~~~~s---p~~~~l~~~~~d~g~v~vwd~~~~~~~~~~--~~~~~v~~~~~sp--~g~~l~~~~~d-------------- 275 (445)
.+++. +||++|++....++.|.+-|+++.+...+. .....+..+...+ +..+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 44453 389999998876689999999998875544 3356677777654 45567766653
Q ss_pred ----CeEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCc------------eEEEEEe-ccC--------C-
Q 013338 276 ----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL------------TLGSIHF-ASK--------P- 329 (445)
Q Consensus 276 ----g~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~------------~~~~~~~-~~~--------~- 329 (445)
+.+.++|..+.+......-......+.++++|+++++.+.+.. .++..-+ |.. .
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 2367889988776322223345678999999999998753321 1221111 100 0
Q ss_pred CCcc-ccccCc----cccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEcc
Q 013338 330 PSLD-AHLLPV----DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 386 (445)
Q Consensus 330 ~~~~-~~~~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~ 386 (445)
.... ....+. ....+..+........+.++|||+++++++.- +.++.|+|++
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKL-----s~tVSViD~~ 305 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-----SPTVTVLDVT 305 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTT-----SSBEEEEEGG
T ss_pred EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCc-----CCcEEEEEeh
Confidence 0000 000000 00111222223357889999999999998754 3889999996
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.02 Score=47.40 Aligned_cols=234 Identities=10% Similarity=-0.032 Sum_probs=137.1
Q ss_pred EEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEec-CCcEEEEccCCCCCccccccccccccc
Q 013338 113 IVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLG 191 (445)
Q Consensus 113 ~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~ 191 (445)
+|+.+. ...|+-.+++. ... ..+. .....+.+++|.+..++++.+.. .+.|.-.+++.......
T Consensus 3 fLl~s~-~~~I~~~~l~~--~~~-~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~---------- 67 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDR--SEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------- 67 (266)
T ss_dssp EEEEEC-BSSEEEEETTS--CCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------
T ss_pred EEEEEC-CCeEEEEECCC--Ccc-eeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc----------
Confidence 344444 34577778753 222 2232 24556789999988677776654 36666555542111100
Q ss_pred cccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeee-cCCCCeeEEEEcCCCCEEE
Q 013338 192 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFF 270 (445)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~ 270 (445)
...+.......+..+++.+.++.|+.+....+.|.+.++.......+. ........++++|...+|.
T Consensus 68 ------------~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly 135 (266)
T d1ijqa1 68 ------------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (266)
T ss_dssp ------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred ------------eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEE
Confidence 001111112457789998877888887665579999999876654433 3456789999999766665
Q ss_pred EEe--cCCeEEEEeCCCCCccccc-CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc
Q 013338 271 AAK--FDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 347 (445)
Q Consensus 271 ~~~--~dg~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (445)
... ..+.|.-.++.......+. ..-...+.+++.+.++.|+.+......+..+++.... ...+...
T Consensus 136 ~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-----------~~~~~~~ 204 (266)
T d1ijqa1 136 WTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-----------RKTILED 204 (266)
T ss_dssp EEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------CEEEEEC
T ss_pred EeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-----------EEEEEeC
Confidence 443 3457888888776654443 3335678999999999888886666677766653210 0111111
Q ss_pred cCCC-ccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 348 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 348 ~~~~-~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.... ...++++. +.+|+.+.... +.|+..+..+++..
T Consensus 205 ~~~~~~p~~lav~--~~~ly~td~~~-----~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 205 EKRLAHPFSLAVF--EDKVFWTDIIN-----EAIFSANRLTGSDV 242 (266)
T ss_dssp TTTTSSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred CCcccccEEEEEE--CCEEEEEECCC-----CeEEEEECCCCcce
Confidence 1111 34556654 45666654332 67888887766543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.38 E-value=0.033 Score=47.79 Aligned_cols=189 Identities=11% Similarity=0.066 Sum_probs=105.3
Q ss_pred eEEEEccCCCEEEEEEC------------CCeEEEEEccCCCCcceeEEecCCC-----CCeeEEEE--CcCCCc-EEEE
Q 013338 103 QGVSWHQHKHIVAFISG------------STQVIVRDYEDSEGKDACILTSDSQ-----RDVKVLEW--RPNGGR-SLSV 162 (445)
Q Consensus 103 ~~~~~sp~g~~la~~~~------------d~~i~iw~~~~~~~~~~~~~~~~~~-----~~v~~l~~--spd~~~-l~~~ 162 (445)
-.++..|+|..+++++. .|.+.++|+...+.........+.. -....+.. .++|.. |+++
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 36778888877765431 4888889986544333222211111 12233333 334433 3333
Q ss_pred e---cCCcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEE--ecC---
Q 013338 163 G---CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YES--- 234 (445)
Q Consensus 163 ~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~--- 234 (445)
. ...+|.+|++.... ..+..+.++........+.+++..++..+++-. ...
T Consensus 118 nH~~~~~~ieif~~~~~~---------------------~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~ 176 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEE---------------------KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 176 (340)
T ss_dssp ECSTTCCEEEEEEEETTT---------------------TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHH
T ss_pred eccCCCceeEEEEEeCCC---------------------CeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhh
Confidence 2 23456666665221 123344555544445678899888888777621 100
Q ss_pred ---------CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCCCcc---cccCCCCCeeEE
Q 013338 235 ---------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSE---PWSSTSGFVTGA 301 (445)
Q Consensus 235 ---------g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~~~---~~~~~~~~v~~~ 301 (445)
+...+|..+.+........-...+.++++||+++|+++ +..++|++|++...... ........+-.+
T Consensus 177 ~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi 256 (340)
T d1v04a_ 177 KSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNI 256 (340)
T ss_dssp HHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEE
T ss_pred hhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCcc
Confidence 13345555555544444445678999999999887655 45779999998754431 122344556678
Q ss_pred EECC-CCCeEEE
Q 013338 302 TWDP-EGRMILL 312 (445)
Q Consensus 302 ~~sp-~~~~l~~ 312 (445)
.+.+ +|.+.++
T Consensus 257 ~~d~~~g~lwva 268 (340)
T d1v04a_ 257 SVDPVTGDLWVG 268 (340)
T ss_dssp EECTTTCCEEEE
T ss_pred EEecCCCEEEEE
Confidence 8876 4444443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.26 E-value=0.037 Score=45.62 Aligned_cols=259 Identities=11% Similarity=0.119 Sum_probs=148.4
Q ss_pred CeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccccccccccccccccCCCCCc
Q 013338 121 TQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR 200 (445)
Q Consensus 121 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (445)
..+.|.|+...... .+.. -..-+.-.+|. +.+++.-...++.+||++++.....
T Consensus 45 ~~VvIidl~n~~~~-~Rrp-----i~AdsAIMhP~-~~IiALrag~~LQiFnletK~klks------------------- 98 (327)
T d1utca2 45 AQVVIIDMNDPSNP-IRRP-----ISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------- 98 (327)
T ss_dssp EEEEEEETTSTTSC-EEEE-----CCCSEEEECSS-SSEEEEEETTEEEEEETTTTEEEEE-------------------
T ss_pred ceEEEEECCCCCcc-eecc-----cchhhhhcCCC-CcEEEEecCCeEEEEehhHhhhhce-------------------
Confidence 46778888643321 1211 12235667898 6777766678999999984433222
Q ss_pred eEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCC-ceeeec-C----CCCeeEEEEcCCCCEEEEEe-
Q 013338 201 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRR-G----FGGLSILKWSPTGDYFFAAK- 273 (445)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~-~~~~~~-~----~~~v~~~~~sp~g~~l~~~~- 273 (445)
..- ...|.--.|-.+ +.|+..... .|+-|+++... ...++. | ...|..-..+++.++++..+
T Consensus 99 ------~~~--~e~VvfWkWis~-~~L~lVT~t--aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI 167 (327)
T d1utca2 99 ------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 167 (327)
T ss_dssp ------EEC--SSCCCEEEESSS-SEEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred ------EEc--CCCcEEEEecCC-CEEEEEcCC--ceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeE
Confidence 222 246777777544 456665544 89999996432 333332 2 35688888899999987543
Q ss_pred --c----CCeEEEEeCCCCCcccccCCCCCeeEEEECCCC---CeEEEEEc--CCceEEEEEeccCCCCccccccCcccc
Q 013338 274 --F----DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG---RMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLP 342 (445)
Q Consensus 274 --~----dg~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (445)
. .|.+.+|..+.+..+.+.+|.+....+.+.-+. +.++.+.. ..+++..+.+...+.... .. ..+
T Consensus 168 ~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~--~f--~kk 243 (327)
T d1utca2 168 SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ--PF--PKK 243 (327)
T ss_dssp EEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCC--CC--CCE
T ss_pred ecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCC--CC--cce
Confidence 2 367999999988778888886665555443221 23333322 224556666544221000 00 001
Q ss_pred cccc-ccC--C-CccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeCCCCCCCceeEeecCCCC
Q 013338 343 DIVS-LTG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 418 (445)
Q Consensus 343 ~~~~-~~~--~-~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~v~~spdg~~~ 418 (445)
.+.. +.. . .-..++..|+.-..++..+.- |.|++||+.++.++....+ -.+.|-.. .|+. .
T Consensus 244 ~vdi~fppea~~DFPvamqvs~kygiiyviTK~------G~i~lyDleTgt~i~~nRI-----s~~~iF~~--a~~~--~ 308 (327)
T d1utca2 244 AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMNRI-----SGETIFVT--APHE--A 308 (327)
T ss_dssp EEECCCCTTCTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEEEC-----CSSCEEEE--EEET--T
T ss_pred eEEEECCccccCCcEEEEEeeccCCEEEEEecC------cEEEEEEcccccEEEEeec-----CCCceEEe--ccCC--C
Confidence 1101 111 1 134567778777778888877 9999999999988743222 23333211 2332 2
Q ss_pred CCCeEEEEecCeeeEeee
Q 013338 419 QGPLLSVCWSSGFCCTYP 436 (445)
Q Consensus 419 ~~~~l~~~~~~G~v~~~~ 436 (445)
.+.+++|. .+|.|....
T Consensus 309 ~~Gi~~VN-r~GqVl~vs 325 (327)
T d1utca2 309 TAGIIGVN-RKGQVLSVC 325 (327)
T ss_dssp TTEEEEEE-TTSEEEEEE
T ss_pred CceEEEEC-CCCeEEEEE
Confidence 46677777 677776544
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.038 Score=45.59 Aligned_cols=158 Identities=13% Similarity=0.012 Sum_probs=101.2
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCC----ceeee-cCCCCeeEEEEcCCCCEEEEE-ecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIR-RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~----~~~~~-~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~ 286 (445)
..+.+++|++..+.|+.+....+.|...++.... ...+. .....+..+++.+.++.|..+ ...+.|.+.++...
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~ 109 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence 4678899999888888876554677777765422 22222 334567889998776666554 45678999999887
Q ss_pred Cccc-ccCCCCCeeEEEECCCCCeEEEEEcC-CceEEEEEeccCCCCccccccCccccccccccCCC--ccceEEeCCCC
Q 013338 287 TSEP-WSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG 362 (445)
Q Consensus 287 ~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g 362 (445)
.... +.........++++|...+|+.+..+ ...+....+ ++.....+.... ..+++++++.+
T Consensus 110 ~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~--------------dGs~~~~l~~~~~~~p~gl~iD~~~ 175 (266)
T d1ijqa1 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS 175 (266)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc--------------CCCceecccccccceeeEEEeeccc
Confidence 6533 33444668899999987777765332 233444443 222223332222 57899999988
Q ss_pred CEEEEEEcCCCcccceEEEEEEccCCC
Q 013338 363 ERLAVSYKGGDDIYKGLIAIYDARRTP 389 (445)
Q Consensus 363 ~~l~~~s~d~~d~~d~~i~vwd~~~~~ 389 (445)
+.|+.+.... +.|...++....
T Consensus 176 ~~lYw~d~~~-----~~I~~~~~dG~~ 197 (266)
T d1ijqa1 176 GRLYWVDSKL-----HSISSIDVNGGN 197 (266)
T ss_dssp TEEEEEETTT-----TEEEEEETTSCS
T ss_pred cEEEEecCCc-----CEEEEEECCCCC
Confidence 8888774432 788888987644
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.81 E-value=0.066 Score=47.63 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=67.4
Q ss_pred eeEEEECCCCCeEEEEEecCC----eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecC---------------
Q 013338 215 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--------------- 275 (445)
Q Consensus 215 v~~~~~sp~~~~l~~~~~d~g----~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--------------- 275 (445)
+..+++||++++++.+-..+| .++++|+.+++.....-.......++|.+|++.|+....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~ 206 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence 445678999999987654434 7999999999765432222223578999999988765432
Q ss_pred -CeEEEEeCCCCCcc--cc-c--CCCCCeeEEEECCCCCeEEEEE
Q 013338 276 -GTFYLWETNTWTSE--PW-S--STSGFVTGATWDPEGRMILLAF 314 (445)
Q Consensus 276 -g~v~iwd~~~~~~~--~~-~--~~~~~v~~~~~sp~~~~l~~~~ 314 (445)
..|+.+.+.+.... .+ . .....+..+..+.++++++...
T Consensus 207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~ 251 (430)
T d1qfma1 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI 251 (430)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence 26888888776542 11 1 2233466788899999987543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.13 E-value=0.41 Score=42.46 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=35.7
Q ss_pred CeeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEec-----CCCCCeeEEEECcC
Q 013338 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTS-----DSQRDVKVLEWRPN 155 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~l~~spd 155 (445)
.-++|+|.|||++|++--.+|.|++++......+.+..+.. .-.+....|+|+|+
T Consensus 28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 46799999999998865457988888764322222222111 12356789999985
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.08 E-value=0.34 Score=41.14 Aligned_cols=106 Identities=9% Similarity=0.080 Sum_probs=65.8
Q ss_pred CCCCCe-EEEEEe--cCCeEEEEEccCCCce-e-e--ecC--CCCeeEEEEcCCCCEEEEEec---------------CC
Q 013338 221 GPDGRY-LASASY--ESSSFTIWDVAQGLGT-P-I--RRG--FGGLSILKWSPTGDYFFAAKF---------------DG 276 (445)
Q Consensus 221 sp~~~~-l~~~~~--d~g~v~vwd~~~~~~~-~-~--~~~--~~~v~~~~~sp~g~~l~~~~~---------------dg 276 (445)
.++|+. |++... .+.+|.+|++...... . . ..+ ....+++++..++.++++-.. -+
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 456653 444432 2247899988754431 1 1 112 356789999999988887421 12
Q ss_pred eEEEEeCCCCCcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEec
Q 013338 277 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 326 (445)
Q Consensus 277 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~ 326 (445)
...+|..+.++.......-...+.++++||+++|+++.....++..+.+.
T Consensus 187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~ 236 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 236 (340)
T ss_dssp CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence 34455445554443333345688999999999999987777777777653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.04 E-value=0.061 Score=46.83 Aligned_cols=121 Identities=10% Similarity=0.123 Sum_probs=71.5
Q ss_pred EEEcCCCCEEEEEecCC-----------eEEEEeCCCCCcccc----cCCCCCeeEEEECCCCCeEEEEEcCCceEEEEE
Q 013338 260 LKWSPTGDYFFAAKFDG-----------TFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH 324 (445)
Q Consensus 260 ~~~sp~g~~l~~~~~dg-----------~v~iwd~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~ 324 (445)
.+...+|+.++.|+.+. .+.+||..+++.... ..+.......++.+++++++.++........++
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence 33444667666666321 377999998876332 133333456788999999887765544555554
Q ss_pred eccCCCCccccccCccccccccccCCCccceEEeCCCCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 325 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
.... .......+.....-..++..+||++++.++.+.....-..+.+||..+.+..
T Consensus 105 ~~~~-----------~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 105 SSSD-----------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp GGGT-----------EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CccC-----------cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence 3321 1111222222223456777889999999876443323356899999876543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.01 E-value=0.45 Score=41.90 Aligned_cols=248 Identities=9% Similarity=0.068 Sum_probs=120.1
Q ss_pred CeeEEEEccCCCEEEEEE-----CCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecC----------
Q 013338 101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------- 165 (445)
Q Consensus 101 ~v~~~~~sp~g~~la~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~d---------- 165 (445)
.+..+++|||++++|.+- ....++++|+. +++.+..... ......++|.+|+..++.+..+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~--tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~ 201 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD--GAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT--TTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccC--cceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccc
Confidence 355678899999999643 23368888885 4554432211 1122568999998888876543
Q ss_pred ------CcEEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccC-CCceeEEEECCCCCeEEEEEec--CCe
Q 013338 166 ------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYE--SSS 236 (445)
Q Consensus 166 ------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d--~g~ 236 (445)
..|..+.+.+...... ++ +.... ...+..+..++++++++..... .+.
T Consensus 202 ~~~~~~~~v~~h~lgt~~~~d~---------------------~v--~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~ 258 (430)
T d1qfma1 202 TSTNLHQKLYYHVLGTDQSEDI---------------------LC--AEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (430)
T ss_dssp CCCCCCCEEEEEETTSCGGGCE---------------------EE--ECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred cccCCcceEEEEECCCCccccc---------------------cc--cccccCCceEEeeeccCCcceeeEEeeccCCcc
Confidence 2355555542211110 11 11111 1345677789999998754332 123
Q ss_pred --EEEEEccCCCc--------eeeecCCCCeeEEEEcCCCCEEEEEec---CCeEEEEeCCCCCcc---cccC-CCCCee
Q 013338 237 --FTIWDVAQGLG--------TPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSE---PWSS-TSGFVT 299 (445)
Q Consensus 237 --v~vwd~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~---~~~~-~~~~v~ 299 (445)
+.+.|+..... ..+...........-+.++.+++.... ++.|...++...... .+.. +...+.
T Consensus 259 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~ 338 (430)
T d1qfma1 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (430)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEE
T ss_pred EEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCccee
Confidence 44445543221 122222222222222323334443332 457777777765442 2333 344454
Q ss_pred EEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccc--cCCCccceEEeCCCCCEEEEE-EcCCCccc
Q 013338 300 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL--TGSQGIEKIAWDASGERLAVS-YKGGDDIY 376 (445)
Q Consensus 300 ~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~-s~d~~d~~ 376 (445)
.-.+...+.+|+.....++ ...+.+.+... .....+ .....+..+...++...+... +.--.-
T Consensus 339 ~~~~~~~~~~lvl~~~~~~-~~~l~v~~~~~-----------~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP-- 404 (430)
T d1qfma1 339 EWVACVRSNFLVLCYLHDV-KNTLQLHDLAT-----------GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP-- 404 (430)
T ss_dssp EEEEEETTTEEEEEEEETT-EEEEEEEETTT-----------CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCC--
T ss_pred eeEEEEECCEEEEEEEcCC-EeEEEEEECCC-----------CcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCC--
Confidence 4344444556665543332 23333332211 111111 111134455555555443332 211111
Q ss_pred ceEEEEEEccCCCe
Q 013338 377 KGLIAIYDARRTPL 390 (445)
Q Consensus 377 d~~i~vwd~~~~~~ 390 (445)
.+++.+|+.++++
T Consensus 405 -~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 405 -GIIYHCDLTKEEL 417 (430)
T ss_dssp -CEEEEEETTSSSC
T ss_pred -CeEEEEECCCCCc
Confidence 6899999988764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.00 E-value=0.31 Score=39.96 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=102.3
Q ss_pred eeEEEEccCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCcEEEEccCCCCCccc
Q 013338 102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181 (445)
Q Consensus 102 v~~~~~sp~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~i~vw~~~~~~~~~~ 181 (445)
..+.-.+|..+.||.-+ ..++.|+|++. .+.++... ....|..=.|-.+ + .++--.+..|.-|+++....+..
T Consensus 65 AdsAIMhP~~~IiALra-g~~LQiFnlet--K~klks~~--~~e~VvfWkWis~-~-~L~lVT~taVYHW~~~g~s~P~k 137 (327)
T d1utca2 65 ADSAIMNPASKVIALKA-GKTLQIFNIEM--KSKMKAHT--MTDDVTFWKWISL-N-TVALVTDNAVYHWSMEGESQPVK 137 (327)
T ss_dssp CSEEEECSSSSEEEEEE-TTEEEEEETTT--TEEEEEEE--CSSCCCEEEESSS-S-EEEEECSSEEEEEESSSSCCCEE
T ss_pred hhhhhcCCCCcEEEEec-CCeEEEEehhH--hhhhceEE--cCCCcEEEEecCC-C-EEEEEcCCceEEEcccCCCCchh
Confidence 34667889999998765 56899999964 44445443 5667888888766 3 44444577899999975444444
Q ss_pred ccccccc----ccccccCCCCCceEEEEeecccCCCcee-------------------EEEEC---CCC-----CeEEEE
Q 013338 182 VRSGAAS----FLGALSRGPGTRWTLVDFLRSQNGEQIT-------------------ALSWG---PDG-----RYLASA 230 (445)
Q Consensus 182 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------------~~~~s---p~~-----~~l~~~ 230 (445)
+...+.. .+..+....+.+|..+--+.... ..|. +.+|. -+| +.++.+
T Consensus 138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 216 (327)
T d1utca2 138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFA 216 (327)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEET-TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred hhhhcccccCceEEEEEECCCCCEEEEEeEecCC-CceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEE
Confidence 3332221 12224445566676554333221 1111 11221 111 123333
Q ss_pred Eec--CCeEEEEEccCCCc--e-------eee-c---CCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCc
Q 013338 231 SYE--SSSFTIWDVAQGLG--T-------PIR-R---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 231 ~~d--~g~v~vwd~~~~~~--~-------~~~-~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~ 288 (445)
... .+.+.+.++..... . .+. . ...-..++..++.-..+..-+.-|.|++||+.++.+
T Consensus 217 ~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~ 289 (327)
T d1utca2 217 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 289 (327)
T ss_dssp EEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccE
Confidence 221 13566666654211 0 010 0 123456777887777888888999999999999887
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.23 E-value=0.74 Score=38.99 Aligned_cols=193 Identities=11% Similarity=0.092 Sum_probs=107.9
Q ss_pred cCCCEEEEEECCCeEEEEEccCCCCcceeEEecCCCCCeeEEEECc------CCCcEEEEec-C---CcEEEEccCCCCC
Q 013338 109 QHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRDVKVLEWRP------NGGRSLSVGC-K---GGICIWAPSYPGN 178 (445)
Q Consensus 109 p~g~~la~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~v~~l~~sp------d~~~l~~~~~-d---g~i~vw~~~~~~~ 178 (445)
|+..+++.....+-+.+|+++ |+.+..+ ..+.++.+..-. ....+++++. + .+|.+|.+.....
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~---G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~ 111 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE---GKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT---CCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred cCccEEEEEcCcCCEEEEcCC---CcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence 455677766677779999984 7766654 245566665432 2122444442 2 3677888762221
Q ss_pred ccccccccccccccccCCCCCceEEEEeecccCCCceeEEEE--CCC-CCeEEEEEecCCeEEEEEccC---CCc----e
Q 013338 179 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GRYLASASYESSSFTIWDVAQ---GLG----T 248 (445)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-~~~l~~~~~d~g~v~vwd~~~---~~~----~ 248 (445)
......... ..... ....+..+|+ ++. |...+......|.+..|.+.. +.. .
T Consensus 112 ~l~~~~~~~-----------------~p~~~-~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv 173 (353)
T d1h6la_ 112 TLQSITDPN-----------------RPIAS-AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV 173 (353)
T ss_dssp EEEECSCSS-----------------SCEEC-SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE
T ss_pred ccccccccc-----------------ccccc-ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee
Confidence 110000000 00000 0134666666 664 555555555558998887743 222 2
Q ss_pred eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCC--cccc----c--CCCCCeeEEEEC--CCCC-eEEEEEcCC
Q 013338 249 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--SEPW----S--STSGFVTGATWD--PEGR-MILLAFAGS 317 (445)
Q Consensus 249 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~--~~~~----~--~~~~~v~~~~~s--p~~~-~l~~~~~~~ 317 (445)
+.......+..|.+......|..+-++.-|+.++..-.. ...+ . .....+..++.- .++. +|+++..++
T Consensus 174 r~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~ 253 (353)
T d1h6la_ 174 RAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN 253 (353)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred eccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence 233456789999999999999999988888888765322 1111 1 234567777653 3433 777676665
Q ss_pred ceEEEEEe
Q 013338 318 LTLGSIHF 325 (445)
Q Consensus 318 ~~~~~~~~ 325 (445)
.+...++.
T Consensus 254 n~f~vydr 261 (353)
T d1h6la_ 254 SSYAIYER 261 (353)
T ss_dssp TEEEEEES
T ss_pred CeEEEEec
Confidence 55555543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.11 E-value=0.44 Score=42.27 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=60.7
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeec---------CCCCeeEEEEcCC---CCEEEEEec------
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---------GFGGLSILKWSPT---GDYFFAAKF------ 274 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~---------~~~~v~~~~~sp~---g~~l~~~~~------ 274 (445)
...++|+|.|||+++++--.. |.|++++..++....+.. .++....|+++|+ ..+|.....
T Consensus 27 ~~P~~la~~pdg~llVter~~-G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERAT-GKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEeCCCeEEEEEecC-CEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 467899999999877765335 799999888776543321 2467789999995 344433211
Q ss_pred -C----C--eEEEEeCCCCCc-----cc----c-cCCCCCeeEEEECCCCCeEEEEEc
Q 013338 275 -D----G--TFYLWETNTWTS-----EP----W-SSTSGFVTGATWDPEGRMILLAFA 315 (445)
Q Consensus 275 -d----g--~v~iwd~~~~~~-----~~----~-~~~~~~v~~~~~sp~~~~l~~~~~ 315 (445)
+ + .+..+....... .. + .........+.|.|||.+.++.++
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 1 233333332221 00 0 112234578999999987665543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.57 E-value=0.71 Score=35.53 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=83.9
Q ss_pred CceeEEEECCCCCeEEEEEecCCeEEEEEccCCCceeeecC--CCCeeEEEEcCCCCEEEE----EecCCeEEEEeCCCC
Q 013338 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFA----AKFDGTFYLWETNTW 286 (445)
Q Consensus 213 ~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~----~~~dg~v~iwd~~~~ 286 (445)
-+|.+++.. +.+..++|+..+ .+.+|-++.|+...+..- -+-|+++ .+++++- ++.-..+.+=|+.++
T Consensus 104 vRI~S~~yd-dk~vvF~Gased-~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG 177 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATED-RVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG 177 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSS-CEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred EEEEEeeec-CceEEEecccCC-ceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEecccC
Confidence 456666664 334555666664 889999998877655432 2334433 3444431 122223455566666
Q ss_pred CcccccCCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCCCCCEEE
Q 013338 287 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA 366 (445)
Q Consensus 287 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 366 (445)
.++.+....+.++.....+..+. ++....-+..+-+.+ +... ..........+.+..++. ..|+-+-+.|++++++
T Consensus 178 ~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~-D~~s-~~yerve~P~kd~~sy~p-~~I~~~~Y~Pdd~L~i 253 (313)
T d2hu7a1 178 GLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTV-DPRD-GSVEDLELPSKDFSSYRP-TAITWLGYLPDGRLAV 253 (313)
T ss_dssp EEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEE-CTTT-CCEEECCCSSCHHHHHCC-SEEEEEEECTTSCEEE
T ss_pred CEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEE-eccc-CceeeeecCcccceeecc-eEEEeeeeCCCCcEEE
Confidence 66666666777888888887665 444333333333322 2210 011111111122222211 0455566899999988
Q ss_pred EEEcCCCcccceEEEEEE
Q 013338 367 VSYKGGDDIYKGLIAIYD 384 (445)
Q Consensus 367 ~~s~d~~d~~d~~i~vwd 384 (445)
.+-.| |.-++|.
T Consensus 254 iakrd------G~s~lF~ 265 (313)
T d2hu7a1 254 VARRE------GRSAVFI 265 (313)
T ss_dssp EEEET------TEEEEEE
T ss_pred EEecC------Cchheee
Confidence 88777 7777776
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=1.7 Score=37.14 Aligned_cols=180 Identities=12% Similarity=0.007 Sum_probs=104.4
Q ss_pred cCcCCeeEEEEccCCCEEEEEECCCeEEEEEccC---------CCCcceeEEecCCCCCeeEEEECcCCCcEEEEecCCc
Q 013338 97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYED---------SEGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 167 (445)
Q Consensus 97 ~~~~~v~~~~~sp~g~~la~~~~d~~i~iw~~~~---------~~~~~~~~~~~~~~~~v~~l~~spd~~~l~~~~~dg~ 167 (445)
+.....+-++.++..-+++.|+.++ +.|..... ......... .-..|..++|+.| . ++...++.
T Consensus 34 lP~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~---~ip~v~~vafs~d--~-l~v~~~~~ 106 (381)
T d1xipa_ 34 LPFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK---EIPDVIFVCFHGD--Q-VLVSTRNA 106 (381)
T ss_dssp CCSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE---ECTTEEEEEEETT--E-EEEEESSE
T ss_pred CCccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc---CCCCeEEEEeeCC--E-EEEEeCCC
Confidence 3445678899999888888787775 55655321 111111111 1235889999765 3 44455667
Q ss_pred EEEEccCCCCCccccccccccccccccCCCCCceEEEEeecccCCCceeEEEECCCCCeEEEEEecCCeEEEEEccCCCc
Q 013338 168 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG 247 (445)
Q Consensus 168 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~ 247 (445)
+..++...-..... .. .- ..++..+.++|. .++....+ |.+.++++..+..
T Consensus 107 l~~~~~~~l~~~~~----------------------~~---~~-~~~~~~~~~~p~--~~~l~~~~-~~~~~~~l~~~~~ 157 (381)
T d1xipa_ 107 LYSLDLEELSEFRT----------------------VT---SF-EKPVFQLKNVNN--TLVILNSV-NDLSALDLRTKST 157 (381)
T ss_dssp EEEEESSSTTCEEE----------------------EE---EC-SSCEEEEEECSS--EEEEEETT-SEEEEEETTTCCE
T ss_pred EEEEEeeccccccc----------------------cc---cc-cccccceecCCc--eeEEEecC-CCEEEEEeccCcc
Confidence 77777662221111 11 11 256788888875 34555556 6999999988865
Q ss_pred eeee------cCCCCeeEEEEcCCCCEEEEEecCCeEEEE-eCCCCCc-ccccCCCCCeeEEEECCCCCeEEEE
Q 013338 248 TPIR------RGFGGLSILKWSPTGDYFFAAKFDGTFYLW-ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA 313 (445)
Q Consensus 248 ~~~~------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw-d~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~ 313 (445)
..+. .-.+.+.+++|++.|+.++++..++ ..+- ++..... .........+.++.|-.+..++++-
T Consensus 158 ~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 158 KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 4432 1246788888988888888764332 2221 2211111 1112234568899998777766643
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.38 E-value=1.9 Score=36.31 Aligned_cols=199 Identities=12% Similarity=0.095 Sum_probs=101.2
Q ss_pred CCCeEEEEEecCCeEEEEEccCCCceeeecCCCCeeEEEEc------CCCCEEEEEec--C--CeEEEEeCCC--CCccc
Q 013338 223 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS------PTGDYFFAAKF--D--GTFYLWETNT--WTSEP 290 (445)
Q Consensus 223 ~~~~l~~~~~d~g~v~vwd~~~~~~~~~~~~~~~v~~~~~s------p~g~~l~~~~~--d--g~v~iwd~~~--~~~~~ 290 (445)
+..+++..... +-|.+||++ |+...... .+.++.+..- -....|++++. + .+|.+|.+.. .....
T Consensus 39 ~~SlI~gTdK~-~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKK-SGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETT-SCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCc-CCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 44444444444 579999996 44443332 3566655543 12223555553 2 3677787653 22222
Q ss_pred ccC-------CCCCeeEEEE--CCC-CCeEEEEEcCCceEEEEEeccCCCCccccccCccccccccccCCCccceEEeCC
Q 013338 291 WSS-------TSGFVTGATW--DPE-GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA 360 (445)
Q Consensus 291 ~~~-------~~~~v~~~~~--sp~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 360 (445)
+.. ....+..+|+ ++. +...+.....++.+..|.++...... +....++++.....+..+.++.
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~------v~~~lvr~f~~~~q~EGCVvDd 189 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY------ISGKKVRAFKMNSQTEGMAADD 189 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS------EEEEEEEEEECSSCEEEEEEET
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc------eeeEeeeccCCCCccceEEEeC
Confidence 221 1224666776 654 55666666777777777775432110 1233455555545688999999
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCeeeeeeeeeeeC--CCCCCCceeEeecCCCCCCCeEEEEecCeeeEeeee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL 437 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~v~~v~~spdg~~~~~~~l~~~~~~G~v~~~~~ 437 (445)
..+.|+.+-++ .-|..++.+.........+....+ ...-+-.|+.-..+. ..|-+++..-.+++..+|+.
T Consensus 190 e~~~LyisEE~------~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~-~~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 190 EYGSLYIAEED------EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD-GKGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp TTTEEEEEETT------TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG-GCEEEEEEEGGGTEEEEEES
T ss_pred CCCcEEEecCc------cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC-CCeEEEEEcCCCCeEEEEec
Confidence 98999988665 445555544221111111111111 223344555433211 12334554445666666654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.08 E-value=2.1 Score=39.13 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=49.6
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc--CCCCCeeEEEECCCCC-eEE
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGR-MIL 311 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~~~-~l~ 311 (445)
|.+.-+|+.+++..-.......+..-..+..|..+++++.||.++.+|.++++..-.. .....-.-+.|..+|+ ||+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 4677788888877554443333333233446778888999999999999999984222 1111112256667885 555
Q ss_pred EE
Q 013338 312 LA 313 (445)
Q Consensus 312 ~~ 313 (445)
+.
T Consensus 546 i~ 547 (582)
T d1flga_ 546 VT 547 (582)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.61 E-value=5.4 Score=36.03 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=47.8
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCC--eeEEEECCCCC-eEE
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--VTGATWDPEGR-MIL 311 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~-~l~ 311 (445)
|.+.-+|+.+++..-..........-.+.-.+.++++++.||.++.+|.++++..-....... -.-+.|..+|+ +|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVA 517 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 467788888887755444333332222333567888899999999999999998422211111 11245556775 555
Q ss_pred EE
Q 013338 312 LA 313 (445)
Q Consensus 312 ~~ 313 (445)
+.
T Consensus 518 v~ 519 (560)
T d1kv9a2 518 IM 519 (560)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=89.57 E-value=2.4 Score=38.69 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=45.3
Q ss_pred eEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCCCCe--eEEEECCCCC-eEEE
Q 013338 236 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGR-MILL 312 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~-~l~~ 312 (445)
.+.-||+.+++..-..........-..+-.|..+++++.|+.++.+|.++++..-.......+ .-+.|..+|+ ||++
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v 537 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (573)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 566677777766544333222222223336778888999999999999999983222111111 1144555776 5554
Q ss_pred E
Q 013338 313 A 313 (445)
Q Consensus 313 ~ 313 (445)
.
T Consensus 538 ~ 538 (573)
T d1kb0a2 538 A 538 (573)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=4.6 Score=32.34 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=20.0
Q ss_pred CCCEEEEEEcCCCcccceEEEEEEccCCCee
Q 013338 361 SGERLAVSYKGGDDIYKGLIAIYDARRTPLI 391 (445)
Q Consensus 361 ~g~~l~~~s~d~~d~~d~~i~vwd~~~~~~~ 391 (445)
++++++.|+.++.... ..+.+||+.+++-.
T Consensus 242 ~~~l~v~GG~~~~~~~-~~v~~yd~~~~~W~ 271 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFL-DSVECYDPDTDTWS 271 (288)
T ss_dssp TTEEEEECCBCSSCBC-CEEEEEETTTTEEE
T ss_pred CCEEEEEecCCCCeec-ceEEEEECCCCEEE
Confidence 6788888766543222 46889999876543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.93 E-value=12 Score=33.72 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=33.0
Q ss_pred eEEEEEccCCCceeeecC-C---------CCeeEEEEcCCCC---EEEEEecCCeEEEEeCCCCCc
Q 013338 236 SFTIWDVAQGLGTPIRRG-F---------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTS 288 (445)
Q Consensus 236 ~v~vwd~~~~~~~~~~~~-~---------~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~ 288 (445)
.+.-.|.++++....... . .......+..+++ .++.++.+|.++++|..+++.
T Consensus 273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~ 338 (571)
T d2ad6a1 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcE
Confidence 677778888876543321 1 1112222223444 456788899999999999875
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.03 E-value=6.7 Score=30.03 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=40.7
Q ss_pred EEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEec----CCeEEEEeCCCCCcccccC--------CCCCeeEEEECCC
Q 013338 239 IWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTSEPWSS--------TSGFVTGATWDPE 306 (445)
Q Consensus 239 vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~----dg~v~iwd~~~~~~~~~~~--------~~~~v~~~~~sp~ 306 (445)
+-|+.+|....+...++.++..-..+..+. ++.-+ ..-| -+|++.++...+.- ..-.|+-+-+.|+
T Consensus 171 ~adl~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pd 248 (313)
T d2hu7a1 171 TSNLSSGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPD 248 (313)
T ss_dssp EEETTTEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTT
T ss_pred EEecccCCEEEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCC
Confidence 334444444444444556666666665554 43322 2234 55888877644332 2234555669999
Q ss_pred CCeEEEE
Q 013338 307 GRMILLA 313 (445)
Q Consensus 307 ~~~l~~~ 313 (445)
+++++.+
T Consensus 249 d~L~iia 255 (313)
T d2hu7a1 249 GRLAVVA 255 (313)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9986665
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.20 E-value=11 Score=31.85 Aligned_cols=136 Identities=7% Similarity=-0.060 Sum_probs=81.4
Q ss_pred ceeEEEECCCCCeEEEEEecCCeEEEEEccCCCce-eeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCccccc
Q 013338 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS 292 (445)
Q Consensus 214 ~v~~~~~sp~~~~l~~~~~d~g~v~vwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~ 292 (445)
.|..++|+-+ .|+.. .+ +.+..++...-... ........+..+.++|. .++....++.+.++++..++...+.
T Consensus 88 ~v~~vafs~d--~l~v~-~~-~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVS-TR-NALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA 161 (381)
T ss_dssp TEEEEEEETT--EEEEE-ES-SEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CeEEEEeeCC--EEEEE-eC-CCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence 6888999754 45554 44 47888887654332 22334566888888775 5666777899999999888753322
Q ss_pred ------CCCCCeeEEEECCCCCeEEEEEcCCceEEEEEeccCCCCccccccCcccccccccc-CCCccceEEeCCCCCEE
Q 013338 293 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERL 365 (445)
Q Consensus 293 ------~~~~~v~~~~~sp~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l 365 (445)
.-...+.+++|++.|+.++++. ++.....-.+- ....+.... .+..|.++.|-.+..++
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~-g~~~q~k~~i~-------------~~~~~~~p~~~~~~v~sI~WL~~~~F~ 227 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSFAWR-NGEMEKQFEFS-------------LPSELEELPVEEYSPLSVTILSPQDFL 227 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEE-TTEEEEEEEEC-------------CCHHHHTSCTTTSEEEEEEESSSSEEE
T ss_pred CCcceEEecCCceEEEEeCCcEEEEEeC-CCceeeccCCC-------------CccccCCCcCCCcceeEEEEecCceEE
Confidence 1235678899999888887653 22211111111 001111111 12258899998877777
Q ss_pred EEEE
Q 013338 366 AVSY 369 (445)
Q Consensus 366 ~~~s 369 (445)
++-+
T Consensus 228 vvy~ 231 (381)
T d1xipa_ 228 AVFG 231 (381)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6553
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.81 E-value=1.2 Score=40.85 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=46.5
Q ss_pred CeEEEEEccCCCceeeecCCCCeeEEEEcCCCCEEEEEecCCeEEEEeCCCCCcccccCCC--CCeeEEEECCCCC-eEE
Q 013338 235 SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS--GFVTGATWDPEGR-MIL 311 (445)
Q Consensus 235 g~v~vwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~-~l~ 311 (445)
|.|.-+|+++++..-.........+-...-.+..+++++.|+.++.+|.++++..-..... ..-.-+.|..||+ ||+
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~ 523 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence 3577777777776544433222222122225667888999999999999999984222111 1222255666776 454
Q ss_pred EE
Q 013338 312 LA 313 (445)
Q Consensus 312 ~~ 313 (445)
+.
T Consensus 524 v~ 525 (571)
T d2ad6a1 524 SM 525 (571)
T ss_dssp EE
T ss_pred EE
Confidence 43
|