Citrus Sinensis ID: 013347

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHHccccccEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEcccccccccccccccccccEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEEEccccccccEEEEEEccccEEEEEEcccEEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEEEccEEEEccccccccEEEEcccccccccEEEEEEEccEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccEEHHHcccHHHHHHHHHccccEEcccccccccHHccccccccccccccccccccccHcccccHHHHHHHHccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEcccccEEEEccccccEEEEEcccccEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEccccccccccccccccccccEEEEccccccEEEEEEcccccEEEEEEEccccccccEEEEEEcccccEEEEEcccEEEcccccEEEEEEEEccccccccEEEEEEcccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mpsfprpgsvtvceinrdlitadnlsddrakdtyGKVLGMvfapvpfqsdelassspdrqeseqrgreegeGLFSTLHGIishsikpllhpdhvhllpevdlqgvswHQHKHIVAFISGSTQVIVRDyedsgkdaciltsdsqrdvkvlewrpnggrslsvgckggiciwapsypgnaasVRSGAASFLGalsrgpgtrwTLVDFLRSqngeqitalswgpdgrylasasyesssFTIWDVAQGlgtpirrgfgglsilkwsptgdyffaakfdgtfylwetntwtsepwsstsgfvtgatwdpEGRMILLAFAGsltlgsihfaskppsldahllpvdlpdivsltgsqgiEKIAWDASGERLAVSYKGGDDIYKGLIAIYdarrtplisLSLIgfirgpgdnpkpvafsfhdkfkqgpllsvcwssgfcctyplifrshllp
Flexible Loop (DISEMBL)
mpsfprpgsvtVCEINRdlitadnlsddrAKDTYGKVLGMVFAPVpfqsdelassspdrqesEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAciltsdsqrdvkvlewrpnggrslsvgCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEkiawdasgERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Low Complexity Region (SEG)
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDrqeseqrgreegegLFSTLHGIISHSIKpllhpdhvhllpEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Disordered region (IsUnstruct)
*********VTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVP**************************LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH***
Disordered Region (DISOPRED)
*****RPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVP************************EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH***
Disordered Region (DISEMBL)
********SVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSD*******************GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Disordered Region (DISPRO)
*****RPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDE********************GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	444	2.2.26 [Sep-21-2011]
P58742	546	Aladin OS=Mus musculus GN	yes	no	0.716	0.582	0.296	7e-34
Q9NRG9	546	Aladin OS=Homo sapiens GN	yes	no	0.716	0.582	0.307	3e-32
Q86HX1	1114	Protein HIRA OS=Dictyoste	no	no	0.371	0.148	0.25	6e-08
Q652L2	975	Protein HIRA OS=Oryza sat	no	no	0.243	0.110	0.313	2e-06
O42611	1025	Protein HIRA OS=Takifugu	N/A	no	0.360	0.156	0.262	5e-06
Q8QFR2	1013	Protein HIRA OS=Xenopus l	N/A	no	0.360	0.157	0.268	9e-06
P79987	1019	Protein HIRA OS=Gallus ga	no	no	0.360	0.157	0.256	3e-05
Q9LXN4	1024	Protein HIRA OS=Arabidops	no	no	0.238	0.103	0.3	4e-05
O15736	612	Protein tipD OS=Dictyoste	no	no	0.162	0.117	0.350	5e-05
Q61666	1015	Protein HIRA OS=Mus muscu	no	no	0.398	0.174	0.263	8e-05

>sp|P58742|AAAS_MOUSE Aladin OS=Mus musculus GN=Aaas PE=1 SV=1

 Score =  145 bits (366), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 153/364 (42%), Gaps = 46/364 (12%)

Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
           L+  +WH H  K  VA +  S    +R Y  +      L    QR+V  L W+P     L
Sbjct: 154 LRVFAWHPHTNKFAVALLDDS----IRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVL 209

Query: 160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219
           +V C+  I IW       +    SG A  L      P                 +T+L+W
Sbjct: 210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAW 252

Query: 220 GPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTF 277
            P+G +L SAS   +   +WDV+     P+   RG GG++ L WSP G    A      F
Sbjct: 253 APNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVF 311

Query: 278 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-- 335
            +WE   WT E W + SG      W P+G  +L    G   + S+ F  +  +   H+  
Sbjct: 312 RVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVGG 371

Query: 336 ------------LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAI 381
                         +  PD     G +    + WD SGERLAV  KG   +  G  +I +
Sbjct: 372 AKSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGNPQVQDGNPVILL 430

Query: 382 YDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440
           +  R +P+  L   G I+G PG   +    +FH  F +G LLSVCWS+G     PL F +
Sbjct: 431 FRTRNSPVFELLPCGIIQGEPGAQAQ--LITFHPSFNKGALLSVCWSTGRITHIPLYFVN 488

Query: 441 HLLP 444
              P
Sbjct: 489 AQFP 492

Plays a role in the normal development of the peripheral and central nervous system.
Mus musculus (taxid: 10090)

>sp|Q9NRG9|AAAS_HUMAN Aladin OS=Homo sapiens GN=AAAS PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 155/364 (42%), Gaps = 46/364 (12%)

Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
           L+  +WH H  K  VA +  S    VR Y  S      L    QR+V  L W+P     L
Sbjct: 154 LRVFAWHPHTNKFAVALLDDS----VRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVL 209

Query: 160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219
           +V C+  I IW       +    SG A  L      P                 +T+L+W
Sbjct: 210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAW 252

Query: 220 GPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTF 277
            P G  L SAS   ++  +WDV+     P+   RG GG++ L WSP G    A      F
Sbjct: 253 APSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAVF 311

Query: 278 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------A 325
            +WE   WT E W + SG      W P+G  +L    G   + S+ F             
Sbjct: 312 RVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGG 371

Query: 326 SKPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAI 381
           +K  ++ A L    +  PD     G +    + WD SGERLAV  KG   +  G  +I +
Sbjct: 372 AKSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVILL 430

Query: 382 YDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440
           +  R +P+  L   G I+G PG  P+ +  +FH  F +G LLSV WS+G     PL F +
Sbjct: 431 FRTRNSPVFELLPCGIIQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFVN 488

Query: 441 HLLP 444
              P
Sbjct: 489 AQFP 492

Plays a role in the normal development of the peripheral and central nervous system.

Homo sapiens (taxid: 9606)

>sp|Q86HX1|HIRA_DICDI Protein HIRA OS=Dictyostelium discoideum GN=hira PE=3 SV=1

 Score = 59.3 bits (142), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 27/192 (14%)

Query: 129 EDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNAASVRSGA 185
           ED+G  K  C + +     V  ++W  +G + L+ G    +C IW  S            
Sbjct: 52  EDAGIPKLLCSIENAHFHSVNSVKWSKDG-KYLASGSDDKLCMIWGLSNNN--------- 101

Query: 186 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-G 244
                +L +     W  V  LR      I+ +SW PD +Y+A+ S++  S  IW+  +  
Sbjct: 102 -----SLLKNTTENWVCVATLRGH-ASDISEVSWSPDNKYIATCSFD-KSIIIWETNKFQ 154

Query: 245 LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWS-STSGFVT 298
           + + +    G +  L W P G Y  +   D +  +W T+ W      +EP+  S + F  
Sbjct: 155 MVSKLEEHKGFVKGLTWDPLGRYLASQSEDKSLIIWRTSDWVVETIVTEPFKHSGNSFFL 214

Query: 299 GATWDPEGRMIL 310
             +W P+G+ I+
Sbjct: 215 RPSWTPDGQFIV 226

Required for the periodic repression of histone gene transcription during the cell cycle. Promotes replication-independent chromatin assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica GN=Os09g0567700 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 10/118 (8%)

Query: 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI- 258
           W +V  LR    + +  L+W PD   LAS S +++   IW +A G+ T + RG   L   
Sbjct: 115 WKVVMTLRGHTAD-VVDLNWSPDDSTLASGSLDNT-VHIWSMANGICTAVLRGHSSLVKG 172

Query: 259 LKWSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWSSTSG--FVTGATWDPEGRMI 309
           + W P G +  +   D T  +W T+ W     T   WS + G  F     W P G  I
Sbjct: 173 VTWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTEGHWSKSLGSTFFRRLAWSPCGHFI 230

Histone chaperone involved in maintining knox genes silencing throughout leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O42611|HIRA_TAKRU Protein HIRA OS=Takifugu rubripes GN=hira PE=2 SV=1

 Score = 52.8 bits (125), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 19/179 (10%)

Query: 146 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT-RWTLVD 204
           V  + W  NG    S G    + +W       AA +  G ++  G+ ++     +W  V 
Sbjct: 73  VNCVRWSNNGLYLASGGDDKLVMVWK-----RAALI--GPSTVFGSSNKLANVEQWRCVT 125

Query: 205 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 262
            LR+  G+ +  +SW P   +LAS S +++   IW+  +   + T +R   G +  L W 
Sbjct: 126 ILRNHTGD-VMDVSWSPHDVWLASCSVDNT-IVIWNARKFPEMVTCLRGHTGLVKGLTWD 183

Query: 263 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 314
           P G Y  +   D +  +W T  W  E     P+S   G   V   +W P+G+ ++ A A
Sbjct: 184 PVGKYIASQADDHSLRVWRTVDWQMEANITKPFSECGGTTHVLRLSWSPDGQYLVSAHA 242

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Takifugu rubripes (taxid: 31033)

>sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)

Query: 146 VKVLEWRPNGGRSLSVGCKGGICIWAPS-YPGNAASVRSGAASFLGALSRGPGTRWTLVD 204
           V  + W  NG    S G    I +W  S Y G   S   G++S L  + +     W  + 
Sbjct: 73  VNCVRWSNNGAYLASGGDDKLIMVWKRSGYIG--PSTVFGSSSKLANVEQ-----WRCLS 125

Query: 205 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 262
            LRS +G+ +  ++W P   +LAS S +++   IW+  +   + + +R   G +  L W 
Sbjct: 126 ILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNALKFPEIISTLRGHSGLVKGLTWD 183

Query: 263 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 314
           P G Y  +   D +  +W T  W  E     P+    G   V   +W P+G  ++ A A
Sbjct: 184 PVGKYIASQADDHSIKVWRTMDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAHA 242

Required for the periodic repression of histone gene transcription during the cell cycle (By similarity). Required for replication-independent chromatin assembly.

Xenopus laevis (taxid: 8355)

>sp|P79987|HIRA_CHICK Protein HIRA OS=Gallus gallus GN=HIRA PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 19/179 (10%)

Query: 146 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT-RWTLVD 204
           V  + W  NG    S G    I +W       AA +  G ++  G+ S+     +W  V 
Sbjct: 73  VNCVRWSNNGVYLASGGDDKLIMVWK-----RAAYI--GPSTVFGSSSKLTNVEQWRCVS 125

Query: 205 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLGTPIRRGFGGLSILKWS 262
            LRS +G+ +  ++W P   +LAS S +++   IW+  +   +   ++   G +  L W 
Sbjct: 126 ILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNAVKFPEILATLKGHSGLVKGLTWD 183

Query: 263 PTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG--FVTGATWDPEGRMILLAFA 314
           P G Y  +   D +  +W T  W  E     P+    G   V   +W P+G  ++ A A
Sbjct: 184 PVGKYIASQADDRSLKVWRTMDWQLETSITKPFDECGGTTHVLRLSWSPDGHYLVSAHA 242

Cooperates with ASF1A to promote replication-independent chromatin assembly (By similarity). May regulate the transcription of a variety of genes controlling cell growth.

Gallus gallus (taxid: 9031)

>sp|Q9LXN4|HIRA_ARATH Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 14/120 (11%)

Query: 200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 259
           W  V  LR    + +  L+W PD   LAS S +++   IW++  G+ T + RG   LS++
Sbjct: 115 WKAVMTLRGHTAD-VVDLNWSPDDSMLASGSLDNT-VHIWNMRTGMCTTVLRGH--LSLV 170

Query: 260 K---WSPTGDYFFAAKFDGTFYLWETNTW-----TSEPWSSTSG--FVTGATWDPEGRMI 309
           K   W P G +  +   D T  +W T+ W     T   W+ + G  F     W P G  +
Sbjct: 171 KGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAHRTDGHWAKSLGSTFFRRLGWSPCGHFL 230

Histone chaperone involved in maintining knox genes silencing throughout leaf development. May be involved in heterochromatic and euchromatic gene silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|O15736|TIPD_DICDI Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 209 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRRGFGGLSILKWSPT 264
           +NG   T  SW PDGRY+AS S +  S  IWD   G    + T +      +    WSP 
Sbjct: 537 RNGLNWTKASWSPDGRYIASGSID-GSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPL 595

Query: 265 GDYFFAAKFDGTFYLWE 281
            + F +A  D     WE
Sbjct: 596 ANIFISADKDKNIIQWE 612

Not known; disruption of the gene for tipD results in morphological defects.

Dictyostelium discoideum (taxid: 44689)

>sp|Q61666|HIRA_MOUSE Protein HIRA OS=Mus musculus GN=Hira PE=1 SV=3

 Score = 48.9 bits (115), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 129 EDSGKDACILTSDSQRD-----VKVLEWRPNGGRSLSVGCKGGICIWA-PSYPGNAASVR 182
           ED  KD  I     Q D     V  + W  +G    S G    I +W   +Y G   S  
Sbjct: 51  EDDEKDENIPKMLCQMDNHLACVNCVRWSNSGMYLASGGDDKLIMVWKRATYIG--PSTV 108

Query: 183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA 242
            G++  L  + +     W  V  LRS +G+ +  ++W P   +LAS S +++   IW+  
Sbjct: 109 FGSSGKLANVEQ-----WRCVSILRSHSGD-VMDVAWSPHDAWLASCSVDNT-VVIWNAV 161

Query: 243 Q--GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG 295
           +   +   +R   G +  L W P G Y  +   D +  +W T  W  E     P+    G
Sbjct: 162 KFPEILATLRGHSGLVKGLTWDPVGKYIASQADDRSLKVWRTLDWQLETSITKPFDECGG 221

Query: 296 --FVTGATWDPEGRMILLAFA 314
              V   +W P+G  ++ A A
Sbjct: 222 TTHVLRLSWSPDGHYLVSAHA 242

Required for the periodic repression of histone gene transcription during the cell cycle (By similarity). Cooperates with ASF1A to promote replication-independent chromatin assembly. Required for the formation of senescence-associated heterochromatin foci (SAHF) and efficient senescence-associated cell cycle exit.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
118486469	449	unknown [Populus trichocarpa]	0.997	0.986	0.773	0.0
225440260	451	PREDICTED: aladin-like [Vitis vinifera]	0.995	0.980	0.769	0.0
224137610	457	predicted protein [Populus trichocarpa]	0.997	0.969	0.748	0.0
449516609	449	PREDICTED: aladin-like [Cucumis sativus]	0.997	0.986	0.766	0.0
30694538	447	aladin-related / adracalin-related prote	1.0	0.993	0.738	0.0
356570401	450	PREDICTED: aladin-like [Glycine max]	1.0	0.986	0.742	0.0
297817004	447	hypothetical protein ARALYDRAFT_486131 [	1.0	0.993	0.736	0.0
356503340	450	PREDICTED: aladin-like [Glycine max]	0.995	0.982	0.734	0.0
9663009	440	putative protein [Arabidopsis thaliana]	0.984	0.993	0.718	0.0
449437972	355	PREDICTED: LOW QUALITY PROTEIN: aladin-l	0.790	0.988	0.815	1e-165

>gi|118486469|gb|ABK95074.1| unknown [Populus trichocarpa]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/450 (77%), Positives = 396/450 (88%), Gaps = 7/450 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP  GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+  + Q
Sbjct: 1   MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
           ESE + R  GE     GL  +L  +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60  ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174
           FISG  QVIVRDYEDS GKDAC+L++ +Q+D++ LEWRPNGG+SLSV CKGGICIWA SY
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKGGICIWAASY 179

Query: 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 234
           PGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGRYLASAS ESS
Sbjct: 180 PGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYLASASCESS 239

Query: 235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294
           SFTIWDV+QGLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS
Sbjct: 240 SFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 299

Query: 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 354
           GFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++TGS+GIEK
Sbjct: 300 GFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTMTGSEGIEK 359

Query: 355 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414
           IAWDASGERLAVSYKGGDD YKGL+AIYD RRTPLIS SL+GFIRGPGDNPKP+AFSFHD
Sbjct: 360 IAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPKPIAFSFHD 419

Query: 415 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           KFKQGPLLSVCWSSGFCCTYPLIF SH LP
Sbjct: 420 KFKQGPLLSVCWSSGFCCTYPLIFHSHSLP 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440260|ref|XP_002283996.1| PREDICTED: aladin-like [Vitis vinifera]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/451 (76%), Positives = 392/451 (86%), Gaps = 9/451 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP+PGSVTVCEINR+LITA NLSDD AKD YGK LGMVF+PVPFQ D+L + SP+  
Sbjct: 1   MRSFPQPGSVTVCEINRNLITALNLSDDGAKDAYGKQLGMVFSPVPFQWDQLLALSPE-H 59

Query: 61  ESEQRGREEGEG-------LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHI 113
            +EQ  +  GE        L + L  I++ S+K   HP+ V+ LPEVDLQGVSWH+HKHI
Sbjct: 60  GAEQPPQVTGESVAPRRKDLSTALQRIVNDSLKRFFHPNDVNCLPEVDLQGVSWHRHKHI 119

Query: 114 VAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172
           +AFISG  QVIVRDYEDS GK+ CILT +SQRDVK++EWRPNGG++LSV CKGGIC+WA 
Sbjct: 120 LAFISGPNQVIVRDYEDSEGKEPCILTHESQRDVKLIEWRPNGGKTLSVACKGGICMWAA 179

Query: 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE 232
           SYPGNAA  RSG A F G ++RG G RWT+VDFL+SQN EQI+ALSW P+GRYLASASYE
Sbjct: 180 SYPGNAAIARSGVAPFFGTVARGSGIRWTVVDFLQSQNDEQISALSWSPNGRYLASASYE 239

Query: 233 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 292
           SSSFTIWDVA+GLGTPIRRG GG+SILKWSPTGDYF +AKFDGTFYLWETNTWTSEPWSS
Sbjct: 240 SSSFTIWDVAKGLGTPIRRGLGGISILKWSPTGDYFLSAKFDGTFYLWETNTWTSEPWSS 299

Query: 293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 352
           TSGFVTGATWDP+G M+L+AF+ S TLGS+HFASKPPSLDAHLLPVDLP+I+SLTGSQGI
Sbjct: 300 TSGFVTGATWDPDGHMVLIAFSKSSTLGSVHFASKPPSLDAHLLPVDLPEIMSLTGSQGI 359

Query: 353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412
           EKIAWDA+GERLA+SYKGGD++YKGLIAIYD RR PLIS SLIGFIRGPG+NPKP+AFSF
Sbjct: 360 EKIAWDATGERLALSYKGGDELYKGLIAIYDVRRNPLISASLIGFIRGPGENPKPLAFSF 419

Query: 413 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL 443
           HDKFKQGPLLSVCWSSGFCCTYPLIFRSH L
Sbjct: 420 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHAL 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137610|ref|XP_002322600.1| predicted protein [Populus trichocarpa] gi|222867230|gb|EEF04361.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/458 (74%), Positives = 392/458 (85%), Gaps = 15/458 (3%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP  GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+  + Q
Sbjct: 1   MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
           ESE + R  GE     GL  +L  +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60  ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GG 166
           FISG  QVIVRDYEDS GKDAC+L++ +Q+D++ LEWRPNGG+SLSV CK        GG
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKQVSKLKFLGG 179

Query: 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 226
           ICIWA SYPGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGRY 
Sbjct: 180 ICIWAASYPGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYP 239

Query: 227 ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 286
               +ESSSFTIWDV+QGLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWT
Sbjct: 240 DQFKFESSSFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWT 299

Query: 287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 346
           SEPWSSTSGFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++
Sbjct: 300 SEPWSSTSGFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTM 359

Query: 347 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 406
           TGS+GIEKIAWDASGERLAVSYKGGDD YKGL+AIYD RRTPLIS SL+GFIRGPGDNPK
Sbjct: 360 TGSEGIEKIAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPK 419

Query: 407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           P+AFSFHDKFKQGPLLSVCWSSGFCCTYPLIF SH LP
Sbjct: 420 PIAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFHSHSLP 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516609|ref|XP_004165339.1| PREDICTED: aladin-like [Cucumis sativus]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/450 (76%), Positives = 381/450 (84%), Gaps = 7/450 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP PGSVT+CEINRDLITAD LSDDRA DTYGK+LGMVF+PVPFQSD L S +P+ +
Sbjct: 1   MPSFPPPGSVTICEINRDLITADCLSDDRANDTYGKILGMVFSPVPFQSDFLVSPTPEPK 60

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
              +     GE     G+ ++L G I  S+  LL P+ V  LP   LQGVSWHQHKHI+A
Sbjct: 61  NEPRNDEVNGEIIQRKGVIASLQGFIEGSVNRLLRPNDVKYLPTEYLQGVSWHQHKHIIA 120

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174
           FISG+ QV+VRDYE++ GKD CILT D QRDVKVLEWRPNGGR+LSV CKGGICIWA S+
Sbjct: 121 FISGTNQVVVRDYENAEGKDPCILTHDLQRDVKVLEWRPNGGRTLSVACKGGICIWAASF 180

Query: 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 234
           PGNAASVR GA SFLG+ SRG G R+TLVDFLRS + EQI+ALSW PDGRYLASA+YESS
Sbjct: 181 PGNAASVRPGAVSFLGSFSRGSGVRYTLVDFLRSHD-EQISALSWSPDGRYLASATYESS 239

Query: 235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294
           SFTIWDVAQGLGTPIRRG G +S +KWSPTGDYFFAAKFDGTFYLWETN+WTSE WSSTS
Sbjct: 240 SFTIWDVAQGLGTPIRRGLGCVSTIKWSPTGDYFFAAKFDGTFYLWETNSWTSEQWSSTS 299

Query: 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 354
           GFVTGA WDPEGRMILLAF+GS  LGSIHFASKPPSL AHLLPVDLP+I + T SQGIEK
Sbjct: 300 GFVTGAIWDPEGRMILLAFSGSSVLGSIHFASKPPSLVAHLLPVDLPEITTSTNSQGIEK 359

Query: 355 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414
           IAWDASGERLAVS+K GD +  GLIA+YD +RTPLI  SLIGFIRGPGDNPKPVAFSFH 
Sbjct: 360 IAWDASGERLAVSFKEGDKLSNGLIAVYDVKRTPLICPSLIGFIRGPGDNPKPVAFSFHG 419

Query: 415 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           K KQGPLLSVCWSSGFCCTYPLIFRSH++P
Sbjct: 420 KLKQGPLLSVCWSSGFCCTYPLIFRSHVVP 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694538|ref|NP_191249.2| aladin-related / adracalin-related protein [Arabidopsis thaliana] gi|26452390|dbj|BAC43280.1| unknown protein [Arabidopsis thaliana] gi|28951013|gb|AAO63430.1| At3g56900 [Arabidopsis thaliana] gi|332646063|gb|AEE79584.1| aladin-related / adracalin-related protein [Arabidopsis thaliana]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/447 (73%), Positives = 379/447 (84%), Gaps = 3/447 (0%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   ++ S+K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
            QV +RDYED   K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query: 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 239
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query: 240 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 297
           DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW  SS SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query: 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 357
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 360

Query: 358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417
           DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420

Query: 418 QGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570401|ref|XP_003553377.1| PREDICTED: aladin-like [Glycine max]

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/450 (74%), Positives = 383/450 (85%), Gaps = 6/450 (1%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPF---QSDELASSSP 57
           M SFP PGS+T+CE+NRDLIT D LSDDRA  TYGK+LG+VF+PVPF   ++D      P
Sbjct: 1   MASFPPPGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHNLENDASDQEGP 60

Query: 58  DRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFI 117
              E+      + +   + L G++++ +  L +P+ VHLLPEVDLQGVSWH +KHI+AFI
Sbjct: 61  TATETAAGESVQRKCPVALLQGLVNNYLGRLFYPNDVHLLPEVDLQGVSWHPNKHIIAFI 120

Query: 118 SGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176
           S  TQV+VRDY++S GKD  ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SYPG
Sbjct: 121 SAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPG 180

Query: 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF 236
           NAASVRSGAASFLG LSR  G R+ LVDFLRS   E ++ALSW PDGRYLASASYESSSF
Sbjct: 181 NAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALSWSPDGRYLASASYESSSF 240

Query: 237 TIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 296
           T+WD AQG+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTSGF
Sbjct: 241 TVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGF 300

Query: 297 VT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 354
           V   GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTGSQGIEK
Sbjct: 301 VKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGIEK 360

Query: 355 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 414
           IAWD SGERLAVS+KGGDD+Y+GLIAIYD RRTPLIS SLIGFIRGPGD PKP++FSFH 
Sbjct: 361 IAWDNSGERLAVSFKGGDDMYRGLIAIYDTRRTPLISTSLIGFIRGPGDKPKPISFSFHG 420

Query: 415 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           KFKQGPLLSVCWSSGFCCTYPL+FRSH+LP
Sbjct: 421 KFKQGPLLSVCWSSGFCCTYPLLFRSHMLP 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817004|ref|XP_002876385.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata] gi|297322223|gb|EFH52644.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/447 (73%), Positives = 377/447 (84%), Gaps = 3/447 (0%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA +TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERALETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   +S  +K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASVESKGLVATLQMKVSDILKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
            QV +RDY+D   K+ C+LTSDSQR VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYDDKDEKEPCVLTSDSQRSVKALEWRPNGGKSLSISCRGGICIWAASYPGNMA 180

Query: 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 239
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query: 240 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFV 297
           DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPW  SS SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query: 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 357
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTGS+GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGSEGIEKIAW 360

Query: 358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417
           DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420

Query: 418 QGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503340|ref|XP_003520468.1| PREDICTED: aladin-like [Glycine max]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/452 (73%), Positives = 382/452 (84%), Gaps = 10/452 (2%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP  GS+T+CE+NRDLIT D LSDDRA  TYGK+LG+VF+PVPF +  L + + D+ 
Sbjct: 1   MASFPPLGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHN--LENDASDQD 58

Query: 61  ESEQRGREEGEGL-----FSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
            +       GE +      + L G ++  +  L +PD VHLLPEVDLQGVSWH +KHI+A
Sbjct: 59  GATTTATTAGESVRRKSPVALLQGFMNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIA 118

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174
           FIS  TQV+VRDY++S GKD  ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SY
Sbjct: 119 FISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASY 178

Query: 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS 234
           PGNAASVRSGAASFLG LSR  G R+ LVDFLRS   E ++AL+W PDGRYLASASYESS
Sbjct: 179 PGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESS 238

Query: 235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 294
           SF++WD AQG+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTS
Sbjct: 239 SFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTS 298

Query: 295 GFVT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 352
           GFV   GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTGSQGI
Sbjct: 299 GFVKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGI 358

Query: 353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 412
           EKIAWD SGERLAVS+KGG+DIY+GLIA+YD RRTPLIS SLIGFIRGPGDNPKP++F F
Sbjct: 359 EKIAWDNSGERLAVSFKGGEDIYRGLIAVYDTRRTPLISTSLIGFIRGPGDNPKPISFLF 418

Query: 413 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           H KFKQGPLLSVCWSSGFCCTYPL+FRSH+LP
Sbjct: 419 HGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLP 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9663009|emb|CAC00753.1| putative protein [Arabidopsis thaliana]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/447 (71%), Positives = 372/447 (83%), Gaps = 10/447 (2%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   ++ S+K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
            QV +RDYED   K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query: 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 239
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALS        + +SY+SSSFTIW
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALS-------WSPSSYDSSSFTIW 233

Query: 240 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFV 297
           DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG V
Sbjct: 234 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 293

Query: 298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 357
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct: 294 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 353

Query: 358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417
           DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 354 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 413

Query: 418 QGPLLSVCWSSGFCCTYPLIFRSHLLP 444
           QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 414 QGPLLSVCWSTGFCCTYPLIFRSHVLP 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437972|ref|XP_004136764.1| PREDICTED: LOW QUALITY PROTEIN: aladin-like [Cucumis sativus]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 288/353 (81%), Positives = 311/353 (88%), Gaps = 2/353 (0%)

Query: 93  HVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEW 151
            V  LP   LQGVSWHQHKHI+AFISG+ QV VRDYE++ GKD CILT D QRDVKVLEW
Sbjct: 4   QVKYLPTEYLQGVSWHQHKHIIAFISGTNQVXVRDYENAEGKDPCILTHDLQRDVKVLEW 63

Query: 152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG 211
           RPNGGR+LSV CKGGICIWA S+PGNAASVR GA SFLG+ SRG G R+TLVDFLRS + 
Sbjct: 64  RPNGGRTLSVACKGGICIWAASFPGNAASVRPGAMSFLGSFSRGSGVRYTLVDFLRSHD- 122

Query: 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA 271
           EQI+ALSW PDGRYLASA+YESSSFTIWDVAQGLGTPIRRG G +S +KWSPTGDYFFAA
Sbjct: 123 EQISALSWSPDGRYLASATYESSSFTIWDVAQGLGTPIRRGLGCVSTIKWSPTGDYFFAA 182

Query: 272 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL 331
           KFDGTFYLWETN+WTSE WSSTSGFVTGA WDPEGRMILLAF+GS  LGSIHFASKPPSL
Sbjct: 183 KFDGTFYLWETNSWTSEQWSSTSGFVTGAIWDPEGRMILLAFSGSSVLGSIHFASKPPSL 242

Query: 332 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS 391
            AHLLPVDLP+I + T SQGIEKIAWDASGERLAVS+K GD +  GLIA+YD +RTPLI 
Sbjct: 243 VAHLLPVDLPEITTSTNSQGIEKIAWDASGERLAVSFKEGDKLSNGLIAVYDVKRTPLIC 302

Query: 392 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
            SLIGFIRGPGDNPKPVAFSFH K KQGPLLSVCWSSGFCCTYPLIFRSH++P
Sbjct: 303 PSLIGFIRGPGDNPKPVAFSFHGKLKQGPLLSVCWSSGFCCTYPLIFRSHVVP 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2103620	447	AT3G56900 [Arabidopsis thalian	1.0	0.993	0.718	2.1e-178
ZFIN|ZDB-GENE-030912-4	499	aaas "achalasia, adrenocortica	0.711	0.633	0.307	1.1e-37
MGI|MGI:2443767	546	Aaas "achalasia, adrenocortica	0.709	0.576	0.294	2.2e-35
UNIPROTKB|Q9NRG9	546	AAAS "Aladin" [Homo sapiens (t	0.707	0.575	0.302	6e-34
UNIPROTKB|H9L088	369	AAAS "Uncharacterized protein"	0.711	0.856	0.281	5.2e-33
RGD|1308701	544	Aaas "achalasia, adrenocortica	0.707	0.577	0.302	1.1e-32
UNIPROTKB|F8VZ44	422	AAAS "Aladin" [Homo sapiens (t	0.707	0.744	0.302	7.7e-32
FB|FBgn0030122	466	CG16892 [Drosophila melanogast	0.490	0.467	0.300	2.1e-26
UNIPROTKB|Q0VC02	556	AAAS "Uncharacterized protein"	0.594	0.474	0.282	4.2e-21
UNIPROTKB|F1SFR0	559	AAAS "Uncharacterized protein"	0.610	0.484	0.287	8.3e-21

TAIR|locus:2103620 AT3G56900 [Arabidopsis thaliana (taxid:3702)]

 Score = 1732 (614.8 bits), Expect = 2.1e-178, P = 2.1e-178
 Identities = 321/447 (71%), Positives = 366/447 (81%)

Query:     1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDXX 60
             M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    +  
Sbjct:     1 MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query:    61 XXXXXXXXXXXXLFSTLHGIISHSIKXXXXXXXXXXXXEVDLQGVSWHQHKHIVAFISGS 120
                         L +TL   ++ S+K            E+DLQGVSWHQ KHI+AFISG+
Sbjct:    61 ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query:   121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
              QV +RDYED   K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct:   121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query:   180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW 239
              VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GRYLASASY+SSSFTIW
Sbjct:   181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query:   240 DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFV 297
             DV+QG GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG V
Sbjct:   241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query:   298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 357
             TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct:   301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 360

Query:   358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 417
             DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct:   361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420

Query:   418 QGPLLSVCWSSGFCCTYPLIFRSHLLP 444
             QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct:   421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-030912-4 aaas "achalasia, adrenocortical insufficiency, alacrimia" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 106/345 (30%), Positives = 149/345 (43%)

Query:   106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 165
             S+  H H   F        ++ Y+     A  L    QR V  L+W+P  G +L+V C+ 
Sbjct:   146 SFSWHPHTDKFAVALLDDSIKIYKPHSSTAPTLKHRCQRSVCALQWKPLCGSALAVACQS 205

Query:   166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 225
              + IW       +    SG A  L      P                 IT+++W P G  
Sbjct:   206 CLLIWHVDPASLSTRPSSGCAQVLSHPGHSP-----------------ITSIAWSPTGSL 248

Query:   226 LASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT 284
             L SAS   ++  +WDVA     P+RR G GG++ L WSP G    AA     F +WET  
Sbjct:   249 LVSASPVDTAMMVWDVAAESCVPLRRVGGGGVTFLSWSPDGSRLLAATPSALFRVWETRM 308

Query:   285 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV 344
             WT E W    G    A W P+G  +LL+  G   + ++ F+       A  +  DL +  
Sbjct:   309 WTCERWPCLKGSCQSACWSPDGACLLLSIQGERLIYALSFSDLTGGPKAATVVADLSE-T 367

Query:   345 SLTGSQG-------IEKIAWDASGERLAVSYKGGDDI--YKGLIAIYDARRTPLISLSLI 395
             S  G +G       +  ++WD  GERLAV  KG      +  +IA++  R +P   L   
Sbjct:   368 SFPGPEGDLTVGGEVCSLSWDPRGERLAVLLKGDAQSTDHPSVIAVFKTRCSPAFELLPC 427

Query:   396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 440
             GF+ G     +P    FH  F+ G LL+VCWS G     P  F S
Sbjct:   428 GFVMGEA-GAEPRFMQFHPHFQHGALLTVCWSDGRITHVPFYFSS 471

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2443767 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
 Identities = 104/353 (29%), Positives = 149/353 (42%)

Query:   110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169
             H H   F        +R Y  +      L    QR+V  L W+P     L+V C+  I I
Sbjct:   160 HPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILI 219

Query:   170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229
             W       +    SG A  L      P                 +T+L+W P+G +L SA
Sbjct:   220 WTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAWAPNGGWLLSA 262

Query:   230 SYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287
             S   +   +WDV+     P+   RG GG++ L WSP G    A      F +WE   WT 
Sbjct:   263 SPVDAVILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTC 321

Query:   288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-------LPVDL 340
             E W + SG      W P+G  +L    G   + S+ F  +  +   H+       +  DL
Sbjct:   322 EAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVGGAKSATIVADL 381

Query:   341 PDIVSLT--GSQGI----EKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISL 392
              +    T  G + +      + WD SGERLAV  KG   +  G  +I ++  R +P+  L
Sbjct:   382 SETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPQVQDGNPVILLFRTRNSPVFEL 441

Query:   393 SLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
                G I+G PG   + +  +FH  F +G LLSVCWS+G     PL F +   P
Sbjct:   442 LPCGIIQGEPGAQAQLI--TFHPSFNKGALLSVCWSTGRITHIPLYFVNAQFP 492

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0007612 "learning" evidence=IMP

GO:0009566 "fertilization" evidence=IMP

UNIPROTKB|Q9NRG9 AAAS "Aladin" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
 Identities = 107/354 (30%), Positives = 147/354 (41%)

Query:   110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169
             H H   F        VR Y  S      L    QR+V  L W+P     L+V C+  I I
Sbjct:   160 HPHTNKFAVALLDDSVRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILI 219

Query:   170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229
             W       +    SG A  L      P                 +T+L+W P G  L SA
Sbjct:   220 WTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAWAPSGGRLLSA 262

Query:   230 SYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287
             S   ++  +WDV+     P+   RG GG++ L WSP G    A      F +WE   WT 
Sbjct:   263 SPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAVFRVWEAQMWTC 321

Query:   288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL 335
             E W + SG      W P+G  +L    G   + S+ F             +K  ++ A L
Sbjct:   322 ERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGGAKSATIVADL 381

Query:   336 --LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLIS 391
                 +  PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  
Sbjct:   382 SETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVILLFRTRNSPVFE 440

Query:   392 LSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
             L   G I+G PG  P+ +  +FH  F +G LLSV WS+G     PL F +   P
Sbjct:   441 LLPCGIIQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFVNAQFP 492

GO:0007612 "learning" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IDA

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|H9L088 AAAS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 99/352 (28%), Positives = 151/352 (42%)

Query:   110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169
             H H   F        VR Y  S      L    QR+V  + W+P     L+V C+  + +
Sbjct:    11 HPHTSKFAVALLDDSVRVYNSSSATIPSLKHRLQRNVAAVAWKPLCASILAVACQSCVLV 70

Query:   170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229
             W       +    SG A  L      P                 +T+L+W P G+ L SA
Sbjct:    71 WHLDPTSLSTRPSSGCAQVLSYPGHSP-----------------VTSLAWAPSGKLLLSA 113

Query:   230 SYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE 288
             S   ++  +WDV+      ++  G GG++ L WSP G    AA     F +WE   WT E
Sbjct:   114 SPVDTAMLVWDVSTENCVQLQWFGGGGVTFLAWSPDGSKVLAATPSAVFKVWEAQMWTCE 173

Query:   289 PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-------LPVDLP 341
              W +  G      W P+G  +L    G   + S+ F+     +   +       +  DL 
Sbjct:   174 KWPTIKGRCQTGCWSPDGSRLLFTVLGESVIYSLSFSEYRGDMQGQVGGSKTASIVADLS 233

Query:   342 DIVSLT--GSQ----GIEKIAWDASGERLAVSYKGGDDIYKG---LIAIYDARRTPLISL 392
             +    T  G +     ++ +AWD +GERLAV  +G D    G   ++A++  R +P+  L
Sbjct:   234 ETTFETPYGEERVGGAVQSMAWDPTGERLAVIIRG-DPRTAGTQTVVAVFRTRNSPVFEL 292

Query:   393 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
                GF+RG   + +P   +FH  F++G LL+VCWS+G     P  F S  +P
Sbjct:   293 LPCGFLRGE-QSAEPQLIAFHPCFQKGALLTVCWSTGTISHIPFFFLSTHVP 343

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

RGD|1308701 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 107/354 (30%), Positives = 149/354 (42%)

Query:   110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169
             H H   F        +R Y  +      L    QR+V  L W+P     L+V C+  I I
Sbjct:   158 HPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILI 217

Query:   170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229
             W       +    SG A  L      P                 +T+L+W P+G +L SA
Sbjct:   218 WTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAWAPNGGWLLSA 260

Query:   230 SYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287
             S   +   +WDV+     P+   RG GG++ L WSP G    A      F +WE   WT 
Sbjct:   261 SPVDAVILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRVWEARMWTC 319

Query:   288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL 335
             E W + SG      W P+G+ +L    G   + S+ F             +K  ++ A L
Sbjct:   320 EGWPTLSGRCQTGCWSPDGKRLLFTVLGEALIYSLSFPEPCGTEKGHVGGAKSATIVADL 379

Query:   336 --LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLIS 391
                 +  PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  
Sbjct:   380 SETTIQTPDGEERLGGEA-HAMVWDPSGERLAVLMKGNPRVQDGNPVILLFRTRNSPVFE 438

Query:   392 LSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
             L   G I+G PG   + V  SFH  F +G LLSVCWS+G     PL F +   P
Sbjct:   439 LLPCGVIQGEPGAQAQLV--SFHPAFNKGALLSVCWSTGRITHIPLYFVNAQFP 490

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0007612 "learning" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009566 "fertilization" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F8VZ44 AAAS "Aladin" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 107/354 (30%), Positives = 147/354 (41%)

Query:   110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169
             H H   F        VR Y  S      L    QR+V  L W+P     L+V C+  I I
Sbjct:    36 HPHTNKFAVALLDDSVRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILI 95

Query:   170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229
             W       +    SG A  L      P                 +T+L+W P G  L SA
Sbjct:    96 WTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAWAPSGGRLLSA 138

Query:   230 SYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287
             S   ++  +WDV+     P+   RG GG++ L WSP G    A      F +WE   WT 
Sbjct:   139 SPVDAAIRVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAVFRVWEAQMWTC 197

Query:   288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL 335
             E W + SG      W P+G  +L    G   + S+ F             +K  ++ A L
Sbjct:   198 ERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGGAKSATIVADL 257

Query:   336 --LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLIS 391
                 +  PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  
Sbjct:   258 SETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVILLFRTRNSPVFE 316

Query:   392 LSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 444
             L   G I+G PG  P+ +  +FH  F +G LLSV WS+G     PL F +   P
Sbjct:   317 LLPCGIIQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFVNAQFP 368

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

FB|FBgn0030122 CG16892 [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
 Identities = 73/243 (30%), Positives = 117/243 (48%)

Query:   204 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWS 262
             +  +  N   IT++ W  DG  LA+AS    S  IW    G+  P++R G  G S+LKWS
Sbjct:   224 EIFKYPNNLPITSMQWNKDGTQLATASIGDRSIIIWQPDTGMMQPLKRLGPPG-SLLKWS 282

Query:   263 PTGDYFFAAKFDGTFYLWETNT-WTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLG 320
             P  D+ FAA  D  F +W  +  WT+E W     G+V  A W P GR +L   +    L 
Sbjct:   283 PDNDWLFAATVDRVFRVWNCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILY 342

Query:   321 SIHFASKP---PSLDA-HLLPV-DLPDIVSLTGSQGI-----EKIAWDASGERLAVSYKG 370
              + F  +     S D   +LP+ DL +  S+  ++ +     +++AWD  G  L V++K 
Sbjct:   343 RLQFVQQSLLSSSADEKEILPIADL-NACSIDANRTLVGGPAQQLAWDPHGNYLVVTFKA 401

Query:   371 GDDI--YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS--FHDKFKQGPLLSVCW 426
              + I  ++  I  +D + +    LS  G      ++P  + F   + D  +   +L++ W
Sbjct:   402 TNCIAVFRTFIQKFDLQISAAYYLS--G--ETAAEHPSFICFQPLYEDNDRS--VLTIAW 455

Query:   427 SSG 429
             SSG
Sbjct:   456 SSG 458

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

UNIPROTKB|Q0VC02 AAAS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
 Identities = 85/301 (28%), Positives = 118/301 (39%)

Query:   110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI 169
             H H   F        VR Y  +      L    QR+V  L W+P     L+V C+  I I
Sbjct:   160 HPHTNKFAVALLDDSVRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCILI 219

Query:   170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA 229
             W       +    SG A  L      P                 +T+L+W P G  L SA
Sbjct:   220 WTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAWAPSGGRLLSA 262

Query:   230 SYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS 287
             S   ++  +WDV+     P+   RG GG++ L WSP G    A      F +WE   WT 
Sbjct:   263 SPVDAAILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTC 321

Query:   288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL 335
             E W + SG      W P G  +L    G   + S+ F             +K  ++ A L
Sbjct:   322 ERWPTLSGRCQTGCWSPSGNRLLFTVLGEPLIYSLSFPERCGEGKGYVGGAKSATIVADL 381

Query:   336 --LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLIS 391
                 +  PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  
Sbjct:   382 SETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFE 440

Query:   392 L 392
             L
Sbjct:   441 L 441

GO:0031965 "nuclear membrane" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F1SFR0 AAAS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
 Identities = 89/310 (28%), Positives = 128/310 (41%)

Query:   102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV 161
             L+  +WH H +   F        +R Y  +      L    QR+V  L W+P     L+V
Sbjct:   154 LRVFAWHPHTN--KFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAV 211

Query:   162 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221
              C+  I IW    P  + S R  ++     LS  PG                +T+L+W P
Sbjct:   212 ACQSCILIWTLD-P-TSLSTRRPSSGCAQVLSH-PGHT-------------PVTSLAWAP 255

Query:   222 DGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWSPTGDYFFAAKFDGTFY- 278
              G  L SAS   ++  +WDV+     P+   RG GG++ L WSP G    A      F  
Sbjct:   256 SGGRLLSASPVDAAILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRR 314

Query:   279 -LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-----------AS 326
              +WE   WT E W + SG      W P+G  +L    G   + S+ F            +
Sbjct:   315 RVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGA 374

Query:   327 KPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIY 382
             K  ++ A L    V  PD     G +    + WD SGERLAV  KG   +  G  +I ++
Sbjct:   375 KSATIVADLSETTVQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGNPRVQNGKPVILLF 433

Query:   383 DARRTPLISL 392
               R +P+  L
Sbjct:   434 RTRNSPVFEL 443

GO:0031965 "nuclear membrane" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVI.1102.1 SubName- Full=Putative uncharacterized protein; (457 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	444
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 63/362 (17%), Positives = 119/362 (32%), Gaps = 55/362 (15%)

Query: 40  MVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPE 99
              +    +  + +   P             E     L  +    +        +    E
Sbjct: 6   STSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHE 65

Query: 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             +  +++     ++   S    + + D ++  K    L       V  L      G S+
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 160 SVGCKGG---ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA 216
            +        + +W  S                        T   L+  L   +   +T+
Sbjct: 126 LLASSSLDGTVKLWDLS------------------------TPGKLIRTLEGHSES-VTS 160

Query: 217 LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF-D 274
           L++ PDG+ LAS S    +  +WD+  G       G    +S L +SP G    A+   D
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 275 GTFYLWETNTWTSEPWSSTSGFVTGA--TWDPEGRMILLAFA-GSLTLGSIHFASKPP-S 330
           GT  LW+ +T      S+ SG       ++ P+G ++    + G++ L  +  +S    +
Sbjct: 221 GTIRLWDLSTG-KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279

Query: 331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI 390
           L  H              S  +  +A+   G+ LA    G  D   G + ++D     L+
Sbjct: 280 LSGH--------------SSSVLSVAFSPDGKLLAS---GSSD---GTVRLWDLETGKLL 319

Query: 391 SL 392
           S 
Sbjct: 320 SS 321

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 26/205 (12%)

Query: 106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG 165
           S+     ++A  S    + + D   S      L+  S   V  + + P+G    S    G
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSDG 306

Query: 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 225
            + +W          + +G                 L       +   +++LS+ PDG  
Sbjct: 307 TVRLW---------DLETGK---------------LLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 226 LASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 285
           L S   +  +  +WD+  G       G   +  + +SP G    +   DGT  LW+ +T 
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402

Query: 286 TSEP-WSSTSGFVTGATWDPEGRMI 309
           +        +  VT   + P+G+ +
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSL 427

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 213 QITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFA 270
           ++ ++++ PDG  L S+S    +  +WD++ G  LGT      G  S+  +SP G    +
Sbjct: 179 EVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FSPDGYLLAS 236

Query: 271 AKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMI 309
              DGT  +W+  T    +  S  +  VT   W P+G+ +
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFA 270
           +T +++ PDG+ LA+ S    +  +WD+    G  +R      G +  +  S  G Y  +
Sbjct: 12  VTCVAFSPDGKLLATGSG-DGTIKVWDLET--GELLRTLKGHTGPVRDVAASADGTYLAS 68

Query: 271 AKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMIL 310
              D T  LW+  T       +  + +V+   + P+GR++ 
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 36/181 (19%)

Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC 163
           V++      VA  S    + + D   +GK  C+ T +    +V  + + P+G + LS   
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLR-TGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSS 197

Query: 164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG 223
            G I +W          + +G                  +  LR      + ++++ PDG
Sbjct: 198 DGTIKLW---------DLSTGK----------------CLGTLRGHE-NGVNSVAFSPDG 231

Query: 224 RYLASASYESSSFTIWDVAQGLGTPIRRGFG---GLSILKWSPTGDYFFAAKFDGTFYLW 280
             LAS S E  +  +WD+    G  ++   G    ++ L WSP G    +   DGT  +W
Sbjct: 232 YLLASGS-EDGTIRVWDLR--TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288

Query: 281 E 281
           +
Sbjct: 289 D 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAK 272
           ++++++ PDGR L+S+S    +  +WDV  G      RG    ++ + +SP G +  ++ 
Sbjct: 96  VSSVAFSPDGRILSSSSR-DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154

Query: 273 FDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLA 312
            DGT  LW+  T      + T  +G V    + P+G  +L +
Sbjct: 155 QDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSS 195

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG2139	445	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0296	399	consensus Angio-associated migratory cell protein	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
PTZ00420	568	coronin; Provisional	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.83
PRK01742	429	tolB translocation protein TolB; Provisional	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.8
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
PRK04922	433	tolB translocation protein TolB; Provisional	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.77
KOG1963	792	consensus WD40 repeat protein [General function pr	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.76
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.74
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.74
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.73
PRK05137	435	tolB translocation protein TolB; Provisional	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
PRK04792	448	tolB translocation protein TolB; Provisional	99.72
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
PRK00178	430	tolB translocation protein TolB; Provisional	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.71
PRK02889	427	tolB translocation protein TolB; Provisional	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.71
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.69
KOG1188	376	consensus WD40 repeat protein [General function pr	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
COG2319	466	FOG: WD40 repeat [General function prediction only	99.67
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
PRK01029	428	tolB translocation protein TolB; Provisional	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG0649	325	consensus WD40 repeat protein [General function pr	99.65
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.63
KOG1334	559	consensus WD40 repeat protein [General function pr	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
PRK00178	430	tolB translocation protein TolB; Provisional	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.6
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG4227	609	consensus WD40 repeat protein [General function pr	99.59
PRK04792	448	tolB translocation protein TolB; Provisional	99.58
PRK01029	428	tolB translocation protein TolB; Provisional	99.58
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.58
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
PRK04043	419	tolB translocation protein TolB; Provisional	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.52
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.51
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.5
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.47
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.45
COG4946	668	Uncharacterized protein related to the periplasmic	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.41
PRK04043	419	tolB translocation protein TolB; Provisional	99.4
KOG4547	541	consensus WD40 repeat-containing protein [General	99.37
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.37
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.36
KOG2314	698	consensus Translation initiation factor 3, subunit	99.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.33
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.3
COG4946	668	Uncharacterized protein related to the periplasmic	99.29
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.27
KOG2315	566	consensus Predicted translation initiation factor	99.27
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.27
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.26
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.26
KOG2314	698	consensus Translation initiation factor 3, subunit	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.25
KOG1334	559	consensus WD40 repeat protein [General function pr	99.22
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.2
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.17
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.12
KOG2321	703	consensus WD40 repeat protein [General function pr	99.12
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.09
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.09
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.05
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.04
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.03
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.02
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.96
PRK02888	635	nitrous-oxide reductase; Validated	98.96
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.9
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.9
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.84
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.83
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.82
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.82
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.79
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.75
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.73
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.72
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.71
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.67
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.61
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.58
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.56
KOG3621	726	consensus WD40 repeat-containing protein [General	98.56
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.54
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.51
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.45
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.44
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.43
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.37
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.35
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.3
KOG2695	425	consensus WD40 repeat protein [General function pr	98.29
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.23
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.22
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.2
PRK13616	591	lipoprotein LpqB; Provisional	98.19
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.18
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.17
COG3391	381	Uncharacterized conserved protein [Function unknow	98.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.15
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.14
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.1
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.09
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.04
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.97
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.88
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.68
PRK13616	591	lipoprotein LpqB; Provisional	97.63
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.62
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.6
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.56
KOG3621	726	consensus WD40 repeat-containing protein [General	97.56
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.55
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.53
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.51
KOG2395	644	consensus Protein involved in vacuole import and d	97.4
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.39
PRK10115	686	protease 2; Provisional	97.38
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.35
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.31
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.28
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.27
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.27
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.22
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.17
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.13
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.07
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.04
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.02
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.98
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.9
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.86
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.82
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.66
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.59
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.48
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.12
KOG2444	238	consensus WD40 repeat protein [General function pr	96.08
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.97
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.88
PRK10115	686	protease 2; Provisional	95.8
PHA02713	557	hypothetical protein; Provisional	95.78
KOG2444	238	consensus WD40 repeat protein [General function pr	95.75
KOG2395	644	consensus Protein involved in vacuole import and d	95.67
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.6
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.51
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.39
KOG2247	615	consensus WD40 repeat-containing protein [General	95.38
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.36
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.36
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.23
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.69
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.64
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.61
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.56
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.39
PRK13684	334	Ycf48-like protein; Provisional	94.34
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.11
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.71
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.69
PHA02713	557	hypothetical protein; Provisional	93.56
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.47
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.25
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.21
PHA03098	534	kelch-like protein; Provisional	93.02
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.96
COG4590	733	ABC-type uncharacterized transport system, permeas	92.85
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.76
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.59
KOG2247	615	consensus WD40 repeat-containing protein [General	92.54
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.51
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.33
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.28
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.15
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	92.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.04
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.76
PHA03098	534	kelch-like protein; Provisional	91.0
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.67
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.49
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.42
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.4
COG5276	370	Uncharacterized conserved protein [Function unknow	90.38
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.26
PLN02153	341	epithiospecifier protein	90.23
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.09
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	89.81
PRK13684	334	Ycf48-like protein; Provisional	89.74
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.61
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	89.51
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.27
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.26
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.21
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.2
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	89.04
COG5167	776	VID27 Protein involved in vacuole import and degra	88.51
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.42
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.72
PLN02193	470	nitrile-specifier protein	87.71
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	87.64
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.15
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.27
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	86.24
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.92
PF13449	326	Phytase-like: Esterase-like activity of phytase	85.62
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.97
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	84.43
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	84.42
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.4
COG5167	776	VID27 Protein involved in vacuole import and degra	84.39
PLN02153	341	epithiospecifier protein	84.16
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.11
PRK13613	599	lipoprotein LpqB; Provisional	83.87
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.83
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	83.44
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	83.15
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.11
PHA02790	480	Kelch-like protein; Provisional	83.03
PRK13615	557	lipoprotein LpqB; Provisional	81.96
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	81.83
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	81.69
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.4
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	81.13
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	80.99
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	80.52

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-44  Score=301.72  Aligned_cols=281  Identities=20%  Similarity=0.314  Sum_probs=238.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|.|++|+|+|..||+|+.|.++++||+.+ ..+..+. .+|..-|.|++|+|||+.+++++.||+|++||..+++.   
T Consensus       117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-eTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~---  191 (480)
T KOG0271|consen  117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-ETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ---  191 (480)
T ss_pred             cEEEEEecCCCceEEecCCCceEEeeccCC-CCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc---
Confidence            599999999999999999999999999997 3444444 69999999999999999999999999999999885443   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-----CCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-----DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG  254 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~  254 (444)
                                           ..+.+++|. ..|++++|.|     ..++|++++.|| .|+|||+..+.++. +.+|..
T Consensus       192 ---------------------~g~~l~gH~-K~It~Lawep~hl~p~~r~las~skDg-~vrIWd~~~~~~~~~lsgHT~  248 (480)
T KOG0271|consen  192 ---------------------IGRALRGHK-KWITALAWEPLHLVPPCRRLASSSKDG-SVRIWDTKLGTCVRTLSGHTA  248 (480)
T ss_pred             ---------------------ccccccCcc-cceeEEeecccccCCCccceecccCCC-CEEEEEccCceEEEEeccCcc
Confidence                                 345688886 8999999975     678999999998 99999999988776 678999


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEEC-----------CCCCE--------------
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD-----------PEGRM--------------  308 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s-----------p~g~~--------------  308 (444)
                      +|+|+.|--+| +|++|+.|++|++|+...|++ ..+.+|..+|+.++.+           |.++.              
T Consensus       249 ~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  249 SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            99999997544 789999999999999999887 6788999999999876           33433              


Q ss_pred             -----------EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          309 -----------ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       309 -----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                                 ++++ +++.++..|+-..            ..+++....+|. -|+.+.||||++|+|++|.|      
T Consensus       328 Y~~~~~~~~erlVSg-sDd~tlflW~p~~------------~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD------  388 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSG-SDDFTLFLWNPFK------------SKKPITRMTGHQALVNHVSFSPDGRYIASASFD------  388 (480)
T ss_pred             HHHhhccCcceeEEe-cCCceEEEecccc------------cccchhhhhchhhheeeEEECCCccEEEEeecc------
Confidence                       6654 4545555544211            345677888999 89999999999999999998      


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      ..|++|+.++|+.+     ..++||-..|+.++||.|.++     |..|..|.++.+|++.-+
T Consensus       389 kSVkLW~g~tGk~l-----asfRGHv~~VYqvawsaDsRL-----lVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  389 KSVKLWDGRTGKFL-----ASFRGHVAAVYQVAWSADSRL-----LVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             cceeeeeCCCcchh-----hhhhhccceeEEEEeccCccE-----EEEcCCCceEEEEEeeee
Confidence            99999999998876     689999999999999999885     788899999999988643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.8e-43  Score=294.45  Aligned_cols=424  Identities=40%  Similarity=0.678  Sum_probs=329.9

Q ss_pred             CCCCCCCCceeEEEEcceeeeeccccchhhhcccccccceeeccCCCCCCcccCCCCCcchhhccccccCcccccccccc
Q 013347            1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGI   80 (444)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~   80 (444)
                      |-+||++|.+++|++++|++++-+.++.++.+.++|+.+|+|.|+-|....+...+.|. |.-.....+.+.+..+|+-.
T Consensus         1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~-E~~~~~~~as~~~~a~l~~a   79 (445)
T KOG2139|consen    1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEG-ENGDKASGASKGLVATLQMA   79 (445)
T ss_pred             CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCccc-ccchhhcccchHHHHHHHHh
Confidence            77999999999999999999999999999999999999999999988876554433332 22222355666777777655


Q ss_pred             cccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE
Q 013347           81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS  160 (444)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~  160 (444)
                      .+...+.+.-..+..++.+.+++.++|++.-..+|++..|-.|++|+-..  .....+.+.....|++++|-|.+..-++
T Consensus        80 ~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~kss--t~pt~Lks~sQrnvtclawRPlsasela  157 (445)
T KOG2139|consen   80 VALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--TCPTKLKSVSQRNVTCLAWRPLSASELA  157 (445)
T ss_pred             hhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccCC--CCCceecchhhcceeEEEeccCCcceee
Confidence            55556667777788888899999999999877888999999999999885  4556666677889999999999999999


Q ss_pred             EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347          161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  240 (444)
Q Consensus       161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd  240 (444)
                      .+..+.|+||..+..........+.          .... ..+-...+|  ..|++++|++||..+++++.+...|.|||
T Consensus       158 vgCr~gIciW~~s~tln~~r~~~~~----------s~~~-~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~gsssi~iWd  224 (445)
T KOG2139|consen  158 VGCRAGICIWSDSRTLNANRNIRMM----------STHH-LQVLQDPGH--NPVTSMQWNEDGTILVTASFGSSSIMIWD  224 (445)
T ss_pred             eeecceeEEEEcCcccccccccccc----------cccc-hhheeCCCC--ceeeEEEEcCCCCEEeecccCcceEEEEc
Confidence            9999999999987443332221110          0000 011122344  68999999999999999998777999999


Q ss_pred             cCCCCceeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEEC-CCCceeccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          241 VAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       241 ~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      ..++..+++. ...+.+.-+.||||+.+|+++.-|+..++|+. ++.......-..+.|....|+|+|+.|++++.....
T Consensus       225 pdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  225 PDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             CCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence            9999998877 45678889999999999999999999999954 444445555556699999999999999999999999


Q ss_pred             EEEEEeecCCCCcC------CCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCC--ccccceEEEEEcCC
Q 013347          319 LGSIHFASKPPSLD------AHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGD--DIYKGLIAIYDARR  386 (444)
Q Consensus       319 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~--~~~d~~i~vwd~~~  386 (444)
                      ++.+.+........      ..+...+...+....+..    ++.+++|.|.|.|||+.....+  ..+...|.+||.+.
T Consensus       305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            99999877655444      222233444444445532    7899999999999999988754  23446788999988


Q ss_pred             CCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeeccCCC
Q 013347          387 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP  444 (444)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~  444 (444)
                      ...+...+...+.+.  ...-+.|+|--  ..+++|+|||+.|+|+.|++++..+.+|
T Consensus       385 sp~vels~cg~i~ge--~P~~IsF~pl~--n~g~lLsiaWsTGriq~ypl~f~~~~~p  438 (445)
T KOG2139|consen  385 SPPVELSYCGMIGGE--YPAYISFGPLK--NEGRLLSIAWSTGRIQRYPLTFQCFRDP  438 (445)
T ss_pred             cCceEEEecccccCC--CCceEEeeecc--cCCcEEEEEeccCceEeeeeEEEeeccc
Confidence            777766665555543  36678888864  7789999999999999999999988766

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-42  Score=290.64  Aligned_cols=262  Identities=21%  Similarity=0.311  Sum_probs=223.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-----CCCeEEEEecCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      -|.|++|+|||+.||+|+.||+|++||..+++..-..+ .+|...|++++|.|     ..++|++++.||.|+|||+..+
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l-~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL-RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc-cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence            49999999999999999999999999999844444444 69999999999975     5567888888999999999822


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFG  254 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~  254 (444)
                                               .++..+.+|. ..|+|+.|--+| ++++++.|+ +|++|+...+.+.. +.+|..
T Consensus       238 -------------------------~~~~~lsgHT-~~VTCvrwGG~g-liySgS~Dr-tIkvw~a~dG~~~r~lkGHah  289 (480)
T KOG0271|consen  238 -------------------------TCVRTLSGHT-ASVTCVRWGGEG-LIYSGSQDR-TIKVWRALDGKLCRELKGHAH  289 (480)
T ss_pred             -------------------------eEEEEeccCc-cceEEEEEcCCc-eEEecCCCc-eEEEEEccchhHHHhhcccch
Confidence                                     4677888996 899999997554 899999998 99999999887665 677888


Q ss_pred             CeEEEEEe-----------cCCC-------------------------eEEEEecCCcEEEEECCCCce--eccccCCCc
Q 013347          255 GLSILKWS-----------PTGD-------------------------YFFAAKFDGTFYLWETNTWTS--EPWSSTSGF  296 (444)
Q Consensus       255 ~v~~~~~s-----------p~~~-------------------------~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~  296 (444)
                      .|+.++.+           |.++                         .|++|++|.++.+|+....+.  ..+.+|...
T Consensus       290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l  369 (480)
T KOG0271|consen  290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL  369 (480)
T ss_pred             heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence            88888776           3344                         499999999999999875543  567899999


Q ss_pred             eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccc
Q 013347          297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      |+.+.||||+++|+++    ..+..+++|+..          +++.+.+|.+|- .|..++|+.|.++|++||.|     
T Consensus       370 Vn~V~fSPd~r~IASa----SFDkSVkLW~g~----------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD-----  430 (480)
T KOG0271|consen  370 VNHVSFSPDGRYIASA----SFDKSVKLWDGR----------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD-----  430 (480)
T ss_pred             eeeEEECCCccEEEEe----ecccceeeeeCC----------CcchhhhhhhccceeEEEEeccCccEEEEcCCC-----
Confidence            9999999999999987    345666666543          677889999999 99999999999999999999     


Q ss_pred             cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          376 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       376 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                       .+++||+++++++.     ..+.||.+.|.++.|||||+.
T Consensus       431 -sTLKvw~V~tkKl~-----~DLpGh~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  431 -STLKVWDVRTKKLK-----QDLPGHADEVFAVDWSPDGQR  465 (480)
T ss_pred             -ceEEEEEeeeeeec-----ccCCCCCceEEEEEecCCCce
Confidence             99999999987775     678899999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.2e-42  Score=294.86  Aligned_cols=277  Identities=13%  Similarity=0.193  Sum_probs=238.7

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      +.+|..+.||.|++.||||+.+|.++||+..+ ......+ .+|...|.++.|+|.  +..+++++.||++++|+++...
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~  252 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-CNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET  252 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCC-cceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence            44799999999999999999999999999998 4555555 699999999999997  4589999999999999998432


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  255 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~  255 (444)
                                               .+..+.+|. ..|..++|+|+|++|++++.|. +-++||++++.... ..+|...
T Consensus       253 -------------------------~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~-tWRlWD~~tk~ElL~QEGHs~~  305 (459)
T KOG0272|consen  253 -------------------------PLQDLEGHL-ARVSRVAFHPSGKFLGTASFDS-TWRLWDLETKSELLLQEGHSKG  305 (459)
T ss_pred             -------------------------chhhhhcch-hhheeeeecCCCceeeeccccc-chhhcccccchhhHhhcccccc
Confidence                                     344577886 8999999999999999999998 99999999987654 6678999


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      |.+++|+|||..+++|+.|..-+|||++++.++ .+.+|...|.+++|+|+|..|+++ +.|++.++|++..        
T Consensus       306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg-s~Dnt~kVWDLR~--------  376 (459)
T KOG0272|consen  306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG-SSDNTCKVWDLRM--------  376 (459)
T ss_pred             cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec-CCCCcEEEeeecc--------
Confidence            999999999999999999999999999999984 567999999999999999999976 4456777777653        


Q ss_pred             cCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                           ..++.++.+|. -|+.+.|+| .|.+|++++.|      ++++||...+...     ++.+.||.+.|.++.+|+
T Consensus       377 -----r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD------~t~kiWs~~~~~~-----~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  377 -----RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD------NTVKIWSTRTWSP-----LKSLAGHEGKVISLDISP  440 (459)
T ss_pred             -----cccceecccccchhhheEecccCCeEEEEcccC------cceeeecCCCccc-----chhhcCCccceEEEEecc
Confidence                 34477888898 899999999 78999999988      9999999997544     588999999999999999


Q ss_pred             CCCCCCCceEEEEeccceeeee
Q 013347          413 HDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       413 dg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ||++     ++.+.-|-++.+|
T Consensus       441 d~~~-----i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  441 DSQA-----IATSSFDRTIKLW  457 (459)
T ss_pred             CCce-----EEEeccCceeeec
Confidence            9987     4444445677766

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.6e-38  Score=258.71  Aligned_cols=292  Identities=15%  Similarity=0.226  Sum_probs=240.9

Q ss_pred             cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE  150 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~  150 (444)
                      ...+++|+||.+.                  |.++.|++|.++|++++.||.+.|||..+. .....+. --..-|..++
T Consensus        45 ~~~rr~LkGH~~K------------------i~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haip-l~s~WVMtCA  104 (343)
T KOG0286|consen   45 MRTRRTLKGHLNK------------------IYAMDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIP-LPSSWVMTCA  104 (343)
T ss_pred             eeeEEEecccccc------------------eeeeEecCCcCeEEeeccCCeEEEEEcccc-cceeEEe-cCceeEEEEE
Confidence            3445889999887                  999999999999999999999999999984 4444442 4567899999


Q ss_pred             EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347          151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS  230 (444)
Q Consensus       151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  230 (444)
                      |+|.|+.++++|-|+...||++.......                   .....+.+.+|. +.+.|+.|-+| ..|++++
T Consensus       105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g-------------------~~~v~r~l~gHt-gylScC~f~dD-~~ilT~S  163 (343)
T KOG0286|consen  105 YSPSGNFVACGGLDNKCSIYPLSTRDAEG-------------------NVRVSRELAGHT-GYLSCCRFLDD-NHILTGS  163 (343)
T ss_pred             ECCCCCeEEecCcCceeEEEecccccccc-------------------cceeeeeecCcc-ceeEEEEEcCC-CceEecC
Confidence            99998777778889999999998443221                   123456788996 89999999875 5678999


Q ss_pred             eCCCeEEEEEcCCCCcee-eecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC
Q 013347          231 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR  307 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~  307 (444)
                      .|. +..+||+++++... +.+|.+.|.+++++| +++.+++|+.|+..++||++.+.. +.+.+|.+.|+++.|.|+|.
T Consensus       164 GD~-TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~  242 (343)
T KOG0286|consen  164 GDM-TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD  242 (343)
T ss_pred             CCc-eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC
Confidence            998 99999999998776 667899999999999 999999999999999999999987 77899999999999999999


Q ss_pred             EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          308 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      -++++ +++.+.+.++++.             ...+..+....   +|++++||..|++|++|..|      .++.+||.
T Consensus       243 afatG-SDD~tcRlyDlRa-------------D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d------~~c~vWDt  302 (343)
T KOG0286|consen  243 AFATG-SDDATCRLYDLRA-------------DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD------FTCNVWDT  302 (343)
T ss_pred             eeeec-CCCceeEEEeecC-------------CcEEeeeccCcccCCceeEEEcccccEEEeeecC------CceeEeec
Confidence            98865 5556777777643             23344444333   89999999999999999888      89999998


Q ss_pred             CCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          385 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      -.++..     ..+.||.++|+++..+|||..     ++-|.-|..+++|
T Consensus       303 lk~e~v-----g~L~GHeNRvScl~~s~DG~a-----v~TgSWDs~lriW  342 (343)
T KOG0286|consen  303 LKGERV-----GVLAGHENRVSCLGVSPDGMA-----VATGSWDSTLRIW  342 (343)
T ss_pred             cccceE-----EEeeccCCeeEEEEECCCCcE-----EEecchhHheeec
Confidence            877665     678899999999999999864     5556556677766

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-38  Score=254.16  Aligned_cols=295  Identities=16%  Similarity=0.222  Sum_probs=239.0

Q ss_pred             CcccccccccccccccccccCCCCccCccccceEEEEEecCC-CeEEEEECCCeEEEEEccCC----CCceeEEecCCCC
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDS----GKDACILTSDSQR  144 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~----~~~~~~~~~~~~~  144 (444)
                      ...+..+|+||.+.                  |+.++..+.+ +.+++++.|..+.+|++...    |...+.+ .+|..
T Consensus         4 ~l~l~~tl~gh~d~------------------Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH   64 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDW------------------VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSH   64 (315)
T ss_pred             hheeeeeecCCCce------------------EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccce
Confidence            34567889999887                  9999999874 67788999999999999865    3334444 58999


Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      .|..+..++||++.++++.|+++++||+..+                         ...+.|.+|. ..|.+++|++|.+
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g-------------------------~~t~~f~GH~-~dVlsva~s~dn~  118 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLATG-------------------------ESTRRFVGHT-KDVLSVAFSTDNR  118 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecCC-------------------------cEEEEEEecC-CceEEEEecCCCc
Confidence            9999999999999999999999999999843                         2445688886 8999999999999


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCceeeecC--CCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce-eccccCCCceeE
Q 013347          225 YLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTG  299 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~  299 (444)
                      .+++|+.|. +|++|++.......+...  .+.|.|+.|+|+  ..+|++++.|++|++||+++.+. ..+.+|.+.++.
T Consensus       119 qivSGSrDk-Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t  197 (315)
T KOG0279|consen  119 QIVSGSRDK-TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNT  197 (315)
T ss_pred             eeecCCCcc-eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEE
Confidence            999999998 999999987765555554  678999999998  67889999999999999999888 567899999999


Q ss_pred             EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      +++||||.+.++| +.++....|++.             ..+.+.++.+...|.+++|+|+.-+|+.+..       ..|
T Consensus       198 ~~vSpDGslcasG-gkdg~~~LwdL~-------------~~k~lysl~a~~~v~sl~fspnrywL~~at~-------~sI  256 (315)
T KOG0279|consen  198 VTVSPDGSLCASG-GKDGEAMLWDLN-------------EGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-------TSI  256 (315)
T ss_pred             EEECCCCCEEecC-CCCceEEEEEcc-------------CCceeEeccCCCeEeeEEecCCceeEeeccC-------Cce
Confidence            9999999988864 555666666653             3444666666669999999999888887654       579


Q ss_pred             EEEEcCCCCeEEEEEeeeeeCC-----CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          380 AIYDARRTPLISLSLIGFIRGP-----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       380 ~vwd~~~~~~~~~~~~~~~~~~-----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +|||+.++..+..... ...+.     .....+++||+||+.     |-.||.+|-|.+|.+.
T Consensus       257 kIwdl~~~~~v~~l~~-d~~g~s~~~~~~~clslaws~dG~t-----Lf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  257 KIWDLESKAVVEELKL-DGIGPSSKAGDPICLSLAWSADGQT-----LFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEeccchhhhhhccc-cccccccccCCcEEEEEEEcCCCcE-----EEeeecCCcEEEEEee
Confidence            9999998876632211 12222     223467799999875     8899999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3e-37  Score=246.97  Aligned_cols=277  Identities=14%  Similarity=0.167  Sum_probs=233.9

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      -+||+++.|.+|++|...+ |.....+. ...+.|..+...|+ +.+++++....||+||+++....             
T Consensus        11 viLvsA~YDhTIRfWqa~t-G~C~rTiq-h~dsqVNrLeiTpd-k~~LAaa~~qhvRlyD~~S~np~-------------   74 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALT-GICSRTIQ-HPDSQVNRLEITPD-KKDLAAAGNQHVRLYDLNSNNPN-------------   74 (311)
T ss_pred             eEEEeccCcceeeeeehhc-CeEEEEEe-cCccceeeEEEcCC-cchhhhccCCeeEEEEccCCCCC-------------
Confidence            4789999999999999998 77777663 44678999999999 67778888899999999844331             


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA  271 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  271 (444)
                                .+.++.+|. +.|+++.|..+|+++++|+.|| +++|||++...+.+...+..+|.++..+|+...|++|
T Consensus        75 ----------Pv~t~e~h~-kNVtaVgF~~dgrWMyTgseDg-t~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~  142 (311)
T KOG0315|consen   75 ----------PVATFEGHT-KNVTAVGFQCDGRWMYTGSEDG-TVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG  142 (311)
T ss_pred             ----------ceeEEeccC-CceEEEEEeecCeEEEecCCCc-eEEEEeccCcccchhccCCCCcceEEecCCcceEEee
Confidence                      345678885 8999999999999999999998 9999999998888999999999999999999999999


Q ss_pred             ecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347          272 KFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  349 (444)
Q Consensus       272 ~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (444)
                      ..+|.|++||+....+  +.++.....|.++...|+|.+++.+ .+.+..+.|++-..       .......++..++.|
T Consensus       143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~~-------~~~s~l~P~~k~~ah  214 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLNH-------QTASELEPVHKFQAH  214 (311)
T ss_pred             cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccCC-------CccccceEhhheecc
Confidence            9999999999998765  3455666789999999999998855 56688899887442       112245667788888


Q ss_pred             C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecc
Q 013347          350 Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS  428 (444)
Q Consensus       350 ~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~  428 (444)
                      . .+..+.+|||+++||++|.|      .+++||+.++-    ......+.+|...++..+||.||+|     |.-+.++
T Consensus       215 ~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~~~----~kle~~l~gh~rWvWdc~FS~dg~Y-----lvTassd  279 (311)
T KOG0315|consen  215 NGHILRCLLSPDVKYLATCSSD------KTVKIWNTDDF----FKLELVLTGHQRWVWDCAFSADGEY-----LVTASSD  279 (311)
T ss_pred             cceEEEEEECCCCcEEEeecCC------ceEEEEecCCc----eeeEEEeecCCceEEeeeeccCccE-----EEecCCC
Confidence            8 89999999999999999999      99999999975    2334568899999999999999998     6667788


Q ss_pred             ceeeeeeeeee
Q 013347          429 GFCCTYPLIFR  439 (444)
Q Consensus       429 g~i~~~~~~~~  439 (444)
                      +.+.+|++...
T Consensus       280 ~~~rlW~~~~~  290 (311)
T KOG0315|consen  280 HTARLWDLSAG  290 (311)
T ss_pred             CceeecccccC
Confidence            99999987643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-38  Score=271.42  Aligned_cols=234  Identities=15%  Similarity=0.251  Sum_probs=202.3

Q ss_pred             ceEEEEEecC--CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~--g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|.++.|+|.  +..||+++.||++++|++++ ......+ .+|...|..++|+|+|++|.+++.|.+-++||+.++...
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El  296 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-ETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL  296 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCC-Ccchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhh
Confidence            5999999997  67899999999999999997 3444444 599999999999999999999999999999999954432


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~  257 (444)
                      .                         ..+||. ..|.+++|+|||.++++|+.|. .-+|||++++.++. +.+|..+|.
T Consensus       297 L-------------------------~QEGHs-~~v~~iaf~~DGSL~~tGGlD~-~~RvWDlRtgr~im~L~gH~k~I~  349 (459)
T KOG0272|consen  297 L-------------------------LQEGHS-KGVFSIAFQPDGSLAATGGLDS-LGRVWDLRTGRCIMFLAGHIKEIL  349 (459)
T ss_pred             H-------------------------hhcccc-cccceeEecCCCceeeccCccc-hhheeecccCcEEEEeccccccee
Confidence            2                         246775 8999999999999999999998 99999999999886 567889999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      +++|+|+|..|++|+.|++++|||++..+. ..+.+|..-|+.+.|+| .|.+|+++ +-|   ..+++|...       
T Consensus       350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta-syD---~t~kiWs~~-------  418 (459)
T KOG0272|consen  350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA-SYD---NTVKIWSTR-------  418 (459)
T ss_pred             eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc-ccC---cceeeecCC-------
Confidence            999999999999999999999999998776 56789999999999999 55666655 333   445555432       


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                         +..+++++.||. .|.++.+++|++++++++.|      .++++|.
T Consensus       419 ---~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D------RT~KLW~  458 (459)
T KOG0272|consen  419 ---TWSPLKSLAGHEGKVISLDISPDSQAIATSSFD------RTIKLWR  458 (459)
T ss_pred             ---CcccchhhcCCccceEEEEeccCCceEEEeccC------ceeeecc
Confidence               678899999999 99999999999999999998      9999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.3e-36  Score=260.13  Aligned_cols=277  Identities=19%  Similarity=0.333  Sum_probs=230.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|++++|+.+|..||+|+.||.++||+..  +.....+ ..|.++|.++.|+.+|.++++++-|+++.+||..++.    
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~--G~l~~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----  309 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKD--GNLISTL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----  309 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecC--chhhhhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce----
Confidence            59999999999999999999999999998  5555555 5899999999999999999999999999999987332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~  259 (444)
                                           ....+.-|. .+-..+.|-.+ ..+++++.|+ .|+++.+...... .+.+|.+.|.++
T Consensus       310 ---------------------~~q~f~~~s-~~~lDVdW~~~-~~F~ts~td~-~i~V~kv~~~~P~~t~~GH~g~V~al  365 (524)
T KOG0273|consen  310 ---------------------VKQQFEFHS-APALDVDWQSN-DEFATSSTDG-CIHVCKVGEDRPVKTFIGHHGEVNAL  365 (524)
T ss_pred             ---------------------EEEeeeecc-CCccceEEecC-ceEeecCCCc-eEEEEEecCCCcceeeecccCceEEE
Confidence                                 223344443 44477888654 5688889998 9999999876654 467799999999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC--------EEEEEEcCCceEEEEEeecCCCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--------MILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~--------~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      .|+|.|.+|++++.|++++||....... ..+..|...|..+.|+|.|.        .++.+++.+.++..|++.     
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-----  440 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-----  440 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc-----
Confidence            9999999999999999999999776555 67889999999999999763        233344555666666653     


Q ss_pred             cCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347          331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  409 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~  409 (444)
                              .+.++.++..|. +|.+++|+|+|+|+|+|+.|      |.|.+|+.++++++     +.+++ .+.|..++
T Consensus       441 --------~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d------g~V~iws~~~~~l~-----~s~~~-~~~Ifel~  500 (524)
T KOG0273|consen  441 --------SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD------GCVHIWSTKTGKLV-----KSYQG-TGGIFELC  500 (524)
T ss_pred             --------CCceeEeeccCCCceEEEEecCCCcEEEecCCC------CeeEeccccchhee-----EeecC-CCeEEEEE
Confidence                    467788898888 99999999999999999999      99999999998876     44554 55689999


Q ss_pred             eeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          410 FSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      |+.+|.+     ++++.++|.+++.+|.+
T Consensus       501 Wn~~G~k-----l~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  501 WNAAGDK-----LGACASDGSVCVLDLRK  524 (524)
T ss_pred             EcCCCCE-----EEEEecCCCceEEEecC
Confidence            9988865     89999999999998863

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-35  Score=243.98  Aligned_cols=291  Identities=13%  Similarity=0.198  Sum_probs=238.1

Q ss_pred             cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE  150 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~  150 (444)
                      ....+.+.||.++                  |+.+.|+|+|.+||+|+.|..|.+|++....+....+ .+|.+.|+.+.
T Consensus        37 ~ap~m~l~gh~ge------------------I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~   97 (338)
T KOG0265|consen   37 QAPIMLLPGHKGE------------------IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELH   97 (338)
T ss_pred             cchhhhcCCCcce------------------EEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeee
Confidence            3445778899887                  9999999999999999999999999988644444444 59999999999


Q ss_pred             EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEE
Q 013347          151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASA  229 (444)
Q Consensus       151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~  229 (444)
                      |.+|++.+++++.|.+|+.||.++++                         +.+.+++|. ..|+.+.-+.-|.. +.++
T Consensus        98 ~~~d~s~i~S~gtDk~v~~wD~~tG~-------------------------~~rk~k~h~-~~vNs~~p~rrg~~lv~Sg  151 (338)
T KOG0265|consen   98 GMRDGSHILSCGTDKTVRGWDAETGK-------------------------RIRKHKGHT-SFVNSLDPSRRGPQLVCSG  151 (338)
T ss_pred             eccCCCEEEEecCCceEEEEecccce-------------------------eeehhcccc-ceeeecCccccCCeEEEec
Confidence            99999999999999999999999443                         455567775 77888875554544 5556


Q ss_pred             eeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCE
Q 013347          230 SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM  308 (444)
Q Consensus       230 ~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~  308 (444)
                      +.|+ ++++||+++.........+..++++.|..++..+++|+-|+.|++||++.+.. ..+.+|...|+.+..+|+|.+
T Consensus       152 sdD~-t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~  230 (338)
T KOG0265|consen  152 SDDG-TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF  230 (338)
T ss_pred             CCCc-eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence            6666 99999999998888888889999999999999999999999999999998877 668899999999999999999


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-----ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      +.+ .+-+..+..|++...         ....+++..+.+|.     ....++|+|+++.+.+++.|      ..+++||
T Consensus       231 lls-nsMd~tvrvwd~rp~---------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d------r~vyvwd  294 (338)
T KOG0265|consen  231 LLS-NSMDNTVRVWDVRPF---------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD------RFVYVWD  294 (338)
T ss_pred             ccc-ccccceEEEEEeccc---------CCCCceEEEeecchhhhhhhcceeeccCCCCcccccccc------ceEEEee
Confidence            884 344455666665422         11345566676655     45678999999999999999      9999999


Q ss_pred             cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeee
Q 013347          384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  433 (444)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~  433 (444)
                      ..+..++     ..+.||...|.+++|+|...+     +..|.+|-+|++
T Consensus       295 ~~~r~~l-----yklpGh~gsvn~~~Fhp~e~i-----ils~~sdk~i~l  334 (338)
T KOG0265|consen  295 TTSRRIL-----YKLPGHYGSVNEVDFHPTEPI-----ILSCSSDKTIYL  334 (338)
T ss_pred             cccccEE-----EEcCCcceeEEEeeecCCCcE-----EEEeccCceeEe
Confidence            9986655     578899999999999998665     666777777764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-35  Score=238.71  Aligned_cols=243  Identities=16%  Similarity=0.233  Sum_probs=195.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      -|..++.++||++.++++.|+++++||+.+ ++....+ .+|...|.+++|++|++++++++.|.+|++|++-..     
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~-g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----  137 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLAT-GESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----  137 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecC-CcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----
Confidence            399999999999999999999999999998 4555554 599999999999999999999999999999998722     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccC-CCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                           +..++..+. .+.|+|+.|+|+  ..+|++++.|+ +|++||+++.+... ..+|.+.+
T Consensus       138 ---------------------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v  195 (315)
T KOG0279|consen  138 ---------------------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK-TVKVWNLRNCQLRTTFIGHSGYV  195 (315)
T ss_pred             ---------------------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc-eEEEEccCCcchhhccccccccE
Confidence                                 222222222 479999999997  77899999998 99999999987765 66788999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      +.+++||||.+.++|+.||.+.+||++.++......+...|.+++|+|+..+|+.+.+..  +.+|++..+.-     +.
T Consensus       196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~-----v~  268 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAV-----VE  268 (315)
T ss_pred             EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc--eEEEeccchhh-----hh
Confidence            999999999999999999999999999999877788999999999999998888776544  55555433211     11


Q ss_pred             CCCcccccc-cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          337 PVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       337 ~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      .+....+.. .+... ...+++|++||+.|+++..|      +.|++|.+.
T Consensus       269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td------~~irv~qv~  313 (315)
T KOG0279|consen  269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD------NVIRVWQVA  313 (315)
T ss_pred             hccccccccccccCCcEEEEEEEcCCCcEEEeeecC------CcEEEEEee
Confidence            111111111 22222 56789999999999999998      999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.2e-34  Score=251.56  Aligned_cols=304  Identities=17%  Similarity=0.222  Sum_probs=228.2

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe--cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      |+|+.|+|||.++|+++.||++.+||=.+ +.....+.  .+|.+.|.+++|+||+.++++++.|.+++|||+.+.....
T Consensus       193 V~~VRysPDG~~Fat~gsDgki~iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  193 VNCVRYSPDGSRFATAGSDGKIYIYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             eeeEEECCCCCeEEEecCCccEEEEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            99999999999999999999999999888 45444442  4799999999999999999999999999999999776665


Q ss_pred             eeeccccccc---cc-------cccCCCCc--------eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc
Q 013347          180 SVRSGAASFL---GA-------LSRGPGTR--------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  241 (444)
Q Consensus       180 ~~~~~~~~~~---~~-------~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~  241 (444)
                      .+..+.....   +.       +..+-.+.        ....+.+.+|. ..|+++..+|++++|++|+.|| .|.-|+.
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn-K~ITaLtv~~d~~~i~SgsyDG-~I~~W~~  349 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN-KSITALTVSPDGKTIYSGSYDG-HINSWDS  349 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc-cceeEEEEcCCCCEEEeeccCc-eEEEEec
Confidence            5544432111   11       11111111        11456788896 8999999999999999999998 9999998


Q ss_pred             CCCCc-------------------------------------------------------------------------ee
Q 013347          242 AQGLG-------------------------------------------------------------------------TP  248 (444)
Q Consensus       242 ~~~~~-------------------------------------------------------------------------~~  248 (444)
                      .++..                                                                         +.
T Consensus       350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv  429 (603)
T KOG0318|consen  350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV  429 (603)
T ss_pred             CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence            76500                                                                         00


Q ss_pred             eec-C--------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCC
Q 013347          249 IRR-G--------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGS  316 (444)
Q Consensus       249 ~~~-~--------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~  316 (444)
                      +.. +        .-...+++++|+++.++.|+.|+.|++|.+.....   ..+..|.+.+++++|||++.+|+++ +..
T Consensus       430 ~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~-Da~  508 (603)
T KOG0318|consen  430 LLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG-DAS  508 (603)
T ss_pred             EEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe-ccC
Confidence            000 0        12346889999999999999999999999988664   3466899999999999999999965 444


Q ss_pred             ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347          317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  395 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~  395 (444)
                      +.+-.|++.+.            ........-|. .|.+++|+|+.+++|+|+-|      ..|.||+++.-..    .+
T Consensus       509 rkvv~yd~~s~------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD------t~Viiysv~kP~~----~i  566 (603)
T KOG0318|consen  509 RKVVLYDVASR------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLD------TNVIIYSVKKPAK----HI  566 (603)
T ss_pred             CcEEEEEcccC------------ceecceeeeeeeeEEEEEeCCCceEEEecccc------ceEEEEEccChhh----he
Confidence            55555654321            11233444566 89999999999999999999      8999999986322    23


Q ss_pred             eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .....|...|+.++|-.+...     ++ .-.|..|++|.+.
T Consensus       567 ~iknAH~~gVn~v~wlde~tv-----vS-sG~Da~iK~W~v~  602 (603)
T KOG0318|consen  567 IIKNAHLGGVNSVAWLDESTV-----VS-SGQDANIKVWNVT  602 (603)
T ss_pred             EeccccccCceeEEEecCceE-----Ee-ccCcceeEEeccc
Confidence            334578888999999755432     33 3367888888764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.2e-34  Score=230.76  Aligned_cols=293  Identities=18%  Similarity=0.305  Sum_probs=233.1

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecC-CCeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKV  148 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~  148 (444)
                      .+...++||.++                  +..++|+|- |..||+++.|..|+||+....  -..+..+..+|...|.+
T Consensus         5 ~~~~~~~gh~~r------------------~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRs   66 (312)
T KOG0645|consen    5 ILEQKLSGHKDR------------------VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRS   66 (312)
T ss_pred             eeEEeecCCCCc------------------EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeee
Confidence            344567788665                  999999998 999999999999999999842  12233444689999999


Q ss_pred             EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEE
Q 013347          149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS  228 (444)
Q Consensus       149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  228 (444)
                      ++|+|.|++|++++.|.++.||.-.                       ++.|.++..+.||. ..|.|++|+++|++||+
T Consensus        67 vAwsp~g~~La~aSFD~t~~Iw~k~-----------------------~~efecv~~lEGHE-nEVK~Vaws~sG~~LAT  122 (312)
T KOG0645|consen   67 VAWSPHGRYLASASFDATVVIWKKE-----------------------DGEFECVATLEGHE-NEVKCVAWSASGNYLAT  122 (312)
T ss_pred             eeecCCCcEEEEeeccceEEEeecC-----------------------CCceeEEeeeeccc-cceeEEEEcCCCCEEEE
Confidence            9999999989899999999999876                       45678899999996 89999999999999999


Q ss_pred             EeeCCCeEEEEEcCCCCc---e-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc----eeccccCCCceeEE
Q 013347          229 ASYESSSFTIWDVAQGLG---T-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSSTSGFVTGA  300 (444)
Q Consensus       229 ~~~d~~~i~iwd~~~~~~---~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~v~~~  300 (444)
                      ++.|. .|.||.+..+..   . .+..|...|..+.|+|...+|++++.|++|++|+-..+.    .+++.+|...|.++
T Consensus       123 CSRDK-SVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~  201 (312)
T KOG0645|consen  123 CSRDK-SVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL  201 (312)
T ss_pred             eeCCC-eEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE
Confidence            99998 999999986543   2 366789999999999999999999999999999877332    26678999999999


Q ss_pred             EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      +|+|.|..|+++ ++++++.+|+....            ..     ..|. .+..++|.  ...||+++.|      +.|
T Consensus       202 ~F~~~G~rl~s~-sdD~tv~Iw~~~~~------------~~-----~~~sr~~Y~v~W~--~~~IaS~ggD------~~i  255 (312)
T KOG0645|consen  202 AFDNIGSRLVSC-SDDGTVSIWRLYTD------------LS-----GMHSRALYDVPWD--NGVIASGGGD------DAI  255 (312)
T ss_pred             EecCCCceEEEe-cCCcceEeeeeccC------------cc-----hhcccceEeeeec--ccceEeccCC------CEE
Confidence            999999988854 66677777775311            00     1233 78899998  4579999888      899


Q ss_pred             EEEEcCCCCeE-EEEEe-eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          380 AIYDARRTPLI-SLSLI-GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       380 ~vwd~~~~~~~-~~~~~-~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +||....+..- ....+ ..-..|+..|++++|.|.+    ...|+.|-+||.|.+|.+.
T Consensus       256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~----~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV----SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC----CCceeecCCCceEEEEEec
Confidence            99987643211 11111 1234688899999999942    2247788899999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5.6e-36  Score=255.54  Aligned_cols=279  Identities=14%  Similarity=0.253  Sum_probs=232.6

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ++|..+.|.|+|+.|++|+..|.+.+|+... .. -..+...|..+|.++.|++++..++++..+|.|++|+....    
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----  170 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FN-FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----  170 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCce-ee-HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence            4799999999999999999999999999864 22 22333689999999999999999999999999999998721    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~  258 (444)
                                            .+..+..|+...|++++|+|+...|++++.|| +|+|||....+.. .+.+|.-.|.+
T Consensus       171 ----------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg-~ikiWdf~~~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  171 ----------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG-TIKIWDFRMPKEERVLRGHGWDVKS  227 (464)
T ss_pred             ----------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCC-eEEEEeccCCchhheeccCCCCcce
Confidence                                  23345666668999999999999999999998 9999999877654 46788899999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ++|+|...++++++.|..|++||.+++.+ ..+..|+..|..+.|+|++++|+++ +.|..+..++++            
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~-skD~~~kv~DiR------------  294 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG-SKDQSCKVFDIR------------  294 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc-cCCceEEEEehh------------
Confidence            99999999999999999999999999998 5678999999999999999999976 444555555543            


Q ss_pred             CCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee-eCCCCCCcceeeeeCC
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI-RGPGDNPKPVAFSFHD  414 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~i~~v~~spdg  414 (444)
                       ..+.+.++++|. .|+++.|+|-. .+|.+++.|      |.|..|.+...+.+     ..+ .+|...|++++|+|=|
T Consensus       295 -~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D------gsvvh~~v~~~~p~-----~~i~~AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  295 -TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD------GSVVHWVVGLEEPL-----GEIPPAHDGEIWSLAYHPLG  362 (464)
T ss_pred             -HhHHHHHhhcchhhheeeccccccccceeeccCC------CceEEEeccccccc-----cCCCcccccceeeeeccccc
Confidence             356788899999 99999999954 677788877      99999998833222     233 3799999999999987


Q ss_pred             CCCCCceEEEEeccceeeeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      -+     |+-|.+|.++.||...
T Consensus       363 hi-----l~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  363 HI-----LATGSNDRTVRFWTRN  380 (464)
T ss_pred             ee-----EeecCCCcceeeeccC
Confidence            64     8889999999998653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-35  Score=259.33  Aligned_cols=293  Identities=14%  Similarity=0.208  Sum_probs=238.5

Q ss_pred             CcccccccccccccccccccCCCCccCccccceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV  148 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~  148 (444)
                      ++.+..++.||...                  |+++.|.| .+.+|++++.|+.|+||++...+.....+ .+|..+|.+
T Consensus       203 Pkk~~~~~~gH~kg------------------vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd  263 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKG------------------VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRD  263 (503)
T ss_pred             cHhheeeccCCccc------------------cchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhh
Confidence            45555677777665                  99999999 89999999999999999999866777766 599999999


Q ss_pred             EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEE
Q 013347          149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLA  227 (444)
Q Consensus       149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~  227 (444)
                      ++|+++|..+++++.|+.|++||++++.....+..                           +..++|+.|+|++ +.++
T Consensus       264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---------------------------~~~~~cvkf~pd~~n~fl  316 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---------------------------DKVPTCVKFHPDNQNIFL  316 (503)
T ss_pred             hhccccCCeeeeeecceeeeeeccccceEEEEEec---------------------------CCCceeeecCCCCCcEEE
Confidence            99999999999999999999999996654443333                           3688999999988 7888


Q ss_pred             EEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCCCceeEEEECC
Q 013347          228 SASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDP  304 (444)
Q Consensus       228 ~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp  304 (444)
                      +|+.|+ .|+.||+++++.+. ...|-+.|..+.|-++|+++++.++|++++||+.+.+-...+.  .+...+.++..+|
T Consensus       317 ~G~sd~-ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P  395 (503)
T KOG0282|consen  317 VGGSDK-KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP  395 (503)
T ss_pred             EecCCC-cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence            889998 99999999998776 4456689999999999999999999999999999987764433  3344567899999


Q ss_pred             CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347          305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAI  381 (444)
Q Consensus       305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v  381 (444)
                      ++.++++- +.+..+.++....          .......+.+.+|.   .-..+.|||||.+|++|+.+      |.+.+
T Consensus       396 ~~~~~~aQ-s~dN~i~ifs~~~----------~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd------G~v~~  458 (503)
T KOG0282|consen  396 NGKWFAAQ-SMDNYIAIFSTVP----------PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD------GKVNF  458 (503)
T ss_pred             CCCeehhh-ccCceEEEEeccc----------ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC------ccEEE
Confidence            99998843 4445666665422          22445566788887   45678999999999999988      99999


Q ss_pred             EEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          382 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       382 wd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ||.++.+++     ..+++|...+..+.|+|...    +-++.|--+|.|.+|+
T Consensus       459 wdwkt~kl~-----~~lkah~~~ci~v~wHP~e~----Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  459 WDWKTTKLV-----SKLKAHDQPCIGVDWHPVEP----SKVATCGWDGLIKIWD  503 (503)
T ss_pred             eechhhhhh-----hccccCCcceEEEEecCCCc----ceeEecccCceeEecC
Confidence            999986665     67889999999999999743    2355555679999884

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.9e-34  Score=264.68  Aligned_cols=239  Identities=16%  Similarity=0.276  Sum_probs=207.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCC-----------------------------CceeEEecCCCCCeEEEEE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----------------------------KDACILTSDSQRDVKVLEW  151 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-----------------------------~~~~~~~~~~~~~v~~l~~  151 (444)
                      +++|+.|++|+..||.|-.|..|++|.+....                             ........+|.++|+.+.|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            69999999999999999999999999987310                             0011112489999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347          152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  231 (444)
Q Consensus       152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  231 (444)
                      +|+.+.|++++.|+++|+|.+.                         .|.++-.+++|. .+|.++.|+|-|-++|+++.
T Consensus       460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V~y~GH~-~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLVIYKGHL-APVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             cccccceeeccCCcceeeeecc-------------------------cceeEEEecCCC-cceeeEEecCCceEEEecCC
Confidence            9998889999999999999998                         455666788886 89999999999999999999


Q ss_pred             CCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEE
Q 013347          232 ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI  309 (444)
Q Consensus       232 d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l  309 (444)
                      |+ +.++|........+ +.+|-+.|.|+.|+|+..|+++|+.|.+||+||+.+|.. +.+.+|.++|.+++|||+|++|
T Consensus       514 D~-tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  514 DQ-TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             Cc-eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence            98 99999998877766 456789999999999999999999999999999999988 5678999999999999999999


Q ss_pred             EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      +++ +.++.+..|++.             .+..+..+.+|. .|.++.||.||..||+++.|      ++|++||+..
T Consensus       593 aSg-~ed~~I~iWDl~-------------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D------nsV~lWD~~~  650 (707)
T KOG0263|consen  593 ASG-DEDGLIKIWDLA-------------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD------NSVRLWDLTK  650 (707)
T ss_pred             eec-ccCCcEEEEEcC-------------CCcchhhhhcccCceeEEEEecCCCEEEecCCC------CeEEEEEchh
Confidence            976 445666666653             456788889998 89999999999999999999      9999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-34  Score=242.45  Aligned_cols=281  Identities=14%  Similarity=0.189  Sum_probs=227.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|+-+.||++|++||+++.|.+..||.+......  ...+ .+|..+|..+.||||.+++++++.+..+.+||+.++...
T Consensus       226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~  304 (519)
T KOG0293|consen  226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR  304 (519)
T ss_pred             cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh
Confidence            6999999999999999999999999999875431  2233 589999999999999999999999999999999965544


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~  257 (444)
                      .....+                         ....+.+++|.|||..+++|+.|+ ++..||+.........+- ...|.
T Consensus       305 ~~y~~~-------------------------~~~S~~sc~W~pDg~~~V~Gs~dr-~i~~wdlDgn~~~~W~gvr~~~v~  358 (519)
T KOG0293|consen  305 HLYPSG-------------------------LGFSVSSCAWCPDGFRFVTGSPDR-TIIMWDLDGNILGNWEGVRDPKVH  358 (519)
T ss_pred             hhcccC-------------------------cCCCcceeEEccCCceeEecCCCC-cEEEecCCcchhhcccccccceeE
Confidence            333222                         236899999999999999999998 999999987654443332 35699


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +++.++||+++++.+.|..|++|+..+.....+.....++++++.|.+++++++.-.. ..+..|++.            
T Consensus       359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~-qei~LWDl~------------  425 (519)
T KOG0293|consen  359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD-QEIHLWDLE------------  425 (519)
T ss_pred             EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc-CeeEEeecc------------
Confidence            9999999999999999999999999887666566667889999999999998876332 334444432            


Q ss_pred             CCcccccccccCC---ceeEEEEC-CCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          338 VDLPDIVSLTGSQ---GIEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       338 ~~~~~~~~~~~~~---~v~~~~~s-pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                       +...++.+.||.   -+..-+|. .+.+++++||+|      +.|+||+..+++++     ..+.||...|.+|+|+|.
T Consensus       426 -e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED------~kvyIWhr~sgkll-----~~LsGHs~~vNcVswNP~  493 (519)
T KOG0293|consen  426 -ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED------SKVYIWHRISGKLL-----AVLSGHSKTVNCVSWNPA  493 (519)
T ss_pred             -hhhHHHHhhcccccceEEEeccCCCCcceEEecCCC------ceEEEEEccCCcee-----EeecCCcceeeEEecCCC
Confidence             345567777877   34444554 456899999999      99999999988776     689999999999999997


Q ss_pred             CCCCCCceEEEEeccceeeeeeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ...    .+|.+.+||+|++|..-
T Consensus       494 ~p~----m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  494 DPE----MFASASDDGTIRIWGPS  513 (519)
T ss_pred             CHH----HhhccCCCCeEEEecCC
Confidence            654    58888899999999754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.7e-33  Score=222.47  Aligned_cols=257  Identities=16%  Similarity=0.224  Sum_probs=208.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|+.+...||++.||+++ ...|++||+.+....+.....+|...|+++.|..+|+.+++++.||+++|||++.....+ 
T Consensus        42 qVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR-  119 (311)
T KOG0315|consen   42 QVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR-  119 (311)
T ss_pred             ceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch-
Confidence            589999999999999875 568999999986443454457999999999999999999999999999999998432222 


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~  258 (444)
                                              .++ | ..+|+++..+|+...|+++..+| .|++||+....+..  +......|.+
T Consensus       120 ------------------------~~~-~-~spVn~vvlhpnQteLis~dqsg-~irvWDl~~~~c~~~liPe~~~~i~s  172 (311)
T KOG0315|consen  120 ------------------------NYQ-H-NSPVNTVVLHPNQTELISGDQSG-NIRVWDLGENSCTHELIPEDDTSIQS  172 (311)
T ss_pred             ------------------------hcc-C-CCCcceEEecCCcceEEeecCCC-cEEEEEccCCccccccCCCCCcceee
Confidence                                    222 2 37999999999999999999998 99999999886554  3344578999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      +...|||.+++.+...|+.++|++-+.+.       .++..|.+.+..+.+||++++|+++++ +.++++|+..+     
T Consensus       173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-dktv~iwn~~~-----  246 (311)
T KOG0315|consen  173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-DKTVKIWNTDD-----  246 (311)
T ss_pred             EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-CceEEEEecCC-----
Confidence            99999999999999999999999976543       246689999999999999999997644 45666666432     


Q ss_pred             CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                             -...-..+++|. .+++++||.||+||++++.|      +.+++|++..++.+     ..+.||-....+++.
T Consensus       247 -------~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd------~~~rlW~~~~~k~v-----~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  247 -------FFKLELVLTGHQRWVWDCAFSADGEYLVTASSD------HTARLWDLSAGKEV-----RQYQGHHKAAVCVAL  308 (311)
T ss_pred             -------ceeeEEEeecCCceEEeeeeccCccEEEecCCC------CceeecccccCcee-----eecCCcccccEEEEe
Confidence                   123445678888 99999999999999999999      99999999998876     567788766555543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2e-33  Score=236.22  Aligned_cols=278  Identities=14%  Similarity=0.162  Sum_probs=224.9

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |+|+++.|-.+++++|+.|++++|||+.+ ++....+ .+|...|..+++|+-..++++++.|+.|+.||++..      
T Consensus       154 Vr~vavdP~n~wf~tgs~DrtikIwDlat-g~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n------  225 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN------  225 (460)
T ss_pred             EEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhh------
Confidence            99999999999999999999999999998 6776666 499999999999999899999999999999999833      


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~  260 (444)
                                         ++++.+.+|- ..|.|++.+|.-..|++++.|. ++++||+++...+. +.+|...|..+.
T Consensus       226 -------------------kvIR~YhGHl-S~V~~L~lhPTldvl~t~grDs-t~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  226 -------------------KVIRHYHGHL-SGVYCLDLHPTLDVLVTGGRDS-TIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             -------------------hhHHHhcccc-ceeEEEeccccceeEEecCCcc-eEEEeeecccceEEEecCCCCcceeEE
Confidence                               3556678886 8999999999999999999998 99999999987665 667999999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      +.|....+++|+.|++|++||++.++. ..+..|...+++++.+|....+++++.+  .+..|.+-             .
T Consensus       285 ~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d--nik~w~~p-------------~  349 (460)
T KOG0285|consen  285 CQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD--NIKQWKLP-------------E  349 (460)
T ss_pred             eecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc--cceeccCC-------------c
Confidence            999888899999999999999999887 6788999999999999998888876543  24455442             4


Q ss_pred             cccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC---CCCCcceeeeeCCC
Q 013347          340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP---GDNPKPVAFSFHDK  415 (444)
Q Consensus       340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~i~~v~~spdg~  415 (444)
                      +..+..+.+|+ -|..++...|| ++++|+.+      |.+.+||.+++...+........|.   ...|++.+|...|.
T Consensus       350 g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn------g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~  422 (460)
T KOG0285|consen  350 GEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN------GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS  422 (460)
T ss_pred             cchhhccccccceeeeeeeccCc-eEEEcCCc------eEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence            55566788888 78899988776 56677777      9999999998876532211111121   33466666655443


Q ss_pred             CCCCceEEEEeccceeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~  435 (444)
                           -|.-|=-+-+|.+|.
T Consensus       423 -----rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  423 -----RLITGEADKTIKMYK  437 (460)
T ss_pred             -----eEEeccCCcceEEEe
Confidence                 244455567777775

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.1e-33  Score=241.66  Aligned_cols=280  Identities=19%  Similarity=0.321  Sum_probs=228.9

Q ss_pred             cccceEEEEEecCCC-eEEEEECCCeEEEEEccCC-CC--ceeEE---------ecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347           98 PEVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDS-GK--DACIL---------TSDSQRDVKVLEWRPNGGRSLSVGCK  164 (444)
Q Consensus        98 ~~~~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~-~~--~~~~~---------~~~~~~~v~~l~~s~~~~~ll~~~~d  164 (444)
                      ++.+|.+++|+|-.. .+++++.|-..++|++... ..  ....+         ....+..|++++|+.+|..|+++..|
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~  256 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED  256 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence            356799999999776 8999999999999999742 11  11111         01234689999999999889999999


Q ss_pred             CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  244 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~  244 (444)
                      |.++||+...                          .+..++..|. ++|.++.|+..|.+|++++.|+ ++.+||..++
T Consensus       257 G~~riw~~~G--------------------------~l~~tl~~Hk-gPI~slKWnk~G~yilS~~vD~-ttilwd~~~g  308 (524)
T KOG0273|consen  257 GEARIWNKDG--------------------------NLISTLGQHK-GPIFSLKWNKKGTYILSGGVDG-TTILWDAHTG  308 (524)
T ss_pred             cEEEEEecCc--------------------------hhhhhhhccC-CceEEEEEcCCCCEEEeccCCc-cEEEEeccCc
Confidence            9999999871                          1344566675 8999999999999999999998 9999999999


Q ss_pred             CceeeecCC-CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          245 LGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       245 ~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      +........ .+-..+.|-. ...|++.+.|+.|+++.+....+ .++.+|.+.|.++.|+|.|.+|+++ ++|+++++|
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~-SdD~TlkiW  386 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC-SDDGTLKIW  386 (524)
T ss_pred             eEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe-cCCCeeEee
Confidence            887766544 4447899974 45688999999999999987766 6788999999999999999998855 566777777


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC---------CEEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG---------ERLAVSYKGGDDIYKGLIAIYDARRTPLISL  392 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg---------~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~  392 (444)
                      .+.             .......+..|. .|..+.|+|+|         ..|++++.|      ++|++||+..+..+  
T Consensus       387 s~~-------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d------stV~lwdv~~gv~i--  445 (524)
T KOG0273|consen  387 SMG-------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD------STVKLWDVESGVPI--  445 (524)
T ss_pred             ecC-------------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC------CeEEEEEccCCcee--
Confidence            753             345567788888 89999999975         378888888      99999999987665  


Q ss_pred             EEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          393 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       393 ~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                         ..+..|..+|++|+|||+|+|     ++-|.-+|.|++|+.
T Consensus       446 ---~~f~kH~~pVysvafS~~g~y-----lAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  446 ---HTLMKHQEPVYSVAFSPNGRY-----LASGSLDGCVHIWST  481 (524)
T ss_pred             ---EeeccCCCceEEEEecCCCcE-----EEecCCCCeeEeccc
Confidence               678899999999999999998     888888999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-31  Score=241.15  Aligned_cols=276  Identities=22%  Similarity=0.347  Sum_probs=223.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|++++|++++.+|.+++|++.. +...... ..|...+..+.|+|+++.+++++.++.|++|++...+    
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----   84 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLET-GELLRTL-KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----   84 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeC-CCcEEEE-ecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----
Confidence            399999999999999999999999999986 3333333 5788899999999998788888889999999998432    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                           ....+..|. ..+.++.|+++++++++++.++ .+.+||+.+++... +..|...+.++
T Consensus        85 ---------------------~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          85 ---------------------CVRTLTGHT-SYVSSVAFSPDGRILSSSSRDK-TIKVWDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             ---------------------ceEEEeccC-CcEEEEEEcCCCCEEEEecCCC-eEEEEECCCcEEEEEeccCCCcEEEE
Confidence                                 223344553 6899999999988888888787 99999999766554 44577889999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      +|+|+++++++++.++.|++||+++++. ..+..|...+.++.|+|+++.+++++. ++.+..|++.             
T Consensus       142 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~-------------  207 (289)
T cd00200         142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLS-------------  207 (289)
T ss_pred             EEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECC-------------
Confidence            9999998888888899999999997766 455678889999999999988887755 5666666653             


Q ss_pred             CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347          339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  417 (444)
Q Consensus       339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~  417 (444)
                      ....+..+..|. .+.++.|+|++.++++++.+      +.|++|++.+++..     ..+.+|...|.+++|+|++++ 
T Consensus       208 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~i~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~-  275 (289)
T cd00200         208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSED------GTIRVWDLRTGECV-----QTLSGHTNSVTSLAWSPDGKR-  275 (289)
T ss_pred             CCceecchhhcCCceEEEEEcCCCcEEEEEcCC------CcEEEEEcCCceeE-----EEccccCCcEEEEEECCCCCE-
Confidence            234445555666 89999999999888888767      89999999875543     456688889999999999765 


Q ss_pred             CCceEEEEeccceeeeee
Q 013347          418 QGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       418 ~~~~l~~~~~~g~i~~~~  435 (444)
                          +..+..+|.|.+|+
T Consensus       276 ----l~~~~~d~~i~iw~  289 (289)
T cd00200         276 ----LASGSADGTIRIWD  289 (289)
T ss_pred             ----EEEecCCCeEEecC
Confidence                77888999999884

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.2e-32  Score=246.34  Aligned_cols=306  Identities=14%  Similarity=0.261  Sum_probs=236.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC----
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG----  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~----  176 (444)
                      +|.++.|+.|.++|++|+.|-.++||.++...........+|.+.|.++-|..+...+++.+.||.+.+|..+...    
T Consensus       147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~  226 (893)
T KOG0291|consen  147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELD  226 (893)
T ss_pred             ceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccc
Confidence            5999999999999999999999999999875444444457999999999999998899999999999999877110    


Q ss_pred             ------------------Cc--cee---ec-ccc-----ccc--------------------------------------
Q 013347          177 ------------------NA--ASV---RS-GAA-----SFL--------------------------------------  189 (444)
Q Consensus       177 ------------------~~--~~~---~~-~~~-----~~~--------------------------------------  189 (444)
                                        ..  ..+   .. ..+     ...                                      
T Consensus       227 ~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis  306 (893)
T KOG0291|consen  227 KAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS  306 (893)
T ss_pred             cccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc
Confidence                              00  000   00 000     000                                      


Q ss_pred             ----cccccCCCCceE-------------------EEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc
Q 013347          190 ----GALSRGPGTRWT-------------------LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  246 (444)
Q Consensus       190 ----~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~  246 (444)
                          ..+++...+.|.                   .+-..++|. ..+++++++|||+++++|+.|| .|+|||..++-|
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~-~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~SgfC  384 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS-DRITSLAYSPDGQLIATGAEDG-KVKVWNTQSGFC  384 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc-cceeeEEECCCCcEEEeccCCC-cEEEEeccCceE
Confidence                001111122232                   112345675 7999999999999999999998 999999999988


Q ss_pred             ee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          247 TP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       247 ~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      .. ...|...|+.+.|+..|+.+++.+.||+|+.||+..... +++. +......|++..|.|..+.+|..+.-.+.+|.
T Consensus       385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence            76 667899999999999999999999999999999987766 3443 44556789999999998887765544444444


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG  402 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  402 (444)
                      +.             +++.+..+.||. +|.+++|+|+|..|+++|.|      .+|++||+-.....    ..+++ +.
T Consensus       465 ~q-------------TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD------kTVRiW~if~s~~~----vEtl~-i~  520 (893)
T KOG0291|consen  465 VQ-------------TGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD------KTVRIWDIFSSSGT----VETLE-IR  520 (893)
T ss_pred             ee-------------cCeeeehhcCCCCcceeeEEccccCeEEecccc------ceEEEEEeeccCce----eeeEe-ec
Confidence            42             678888999999 99999999999999999998      99999998654222    12233 35


Q ss_pred             CCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          403 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       403 ~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ..+..++|+|||+-     +++..-+|.|.||+..
T Consensus       521 sdvl~vsfrPdG~e-----laVaTldgqItf~d~~  550 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKE-----LAVATLDGQITFFDIK  550 (893)
T ss_pred             cceeEEEEcCCCCe-----EEEEEecceEEEEEhh
Confidence            66889999999997     8888889999999864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2e-31  Score=234.81  Aligned_cols=336  Identities=18%  Similarity=0.235  Sum_probs=238.8

Q ss_pred             cccccCCCCccCcc--ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe
Q 013347           85 IKPLLHPDHVHLLP--EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG  162 (444)
Q Consensus        85 ~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~  162 (444)
                      ++.+..+.....+.  .+.++-..|||.|.++|+|...|+|+||+........+.......++|..++|+.++++++++|
T Consensus        43 ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG  122 (603)
T KOG0318|consen   43 IRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG  122 (603)
T ss_pred             EEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe
Confidence            33344444333333  4579999999999999999999999999998643333333345678999999999999999998


Q ss_pred             cC----CcEEEEecCCC-----CCcceeeccccc---cccccccCCCC--------ceEEEEEeeccCCCceEEEEEccC
Q 013347          163 CK----GGICIWAPSYP-----GNAASVRSGAAS---FLGALSRGPGT--------RWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       163 ~d----g~v~iw~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ..    |.+.+||-.+.     ++.+.+.+..+.   ++..++.+.+.        .++...+++.|+ ..|.|+.|+||
T Consensus       123 EGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs-kFV~~VRysPD  201 (603)
T KOG0318|consen  123 EGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS-KFVNCVRYSPD  201 (603)
T ss_pred             cCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc-cceeeEEECCC
Confidence            74    67778886521     222222222222   22222222222        244556777786 79999999999


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCceeee----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----------
Q 013347          223 GRYLASASYESSSFTIWDVAQGLGTPIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----------  287 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----------  287 (444)
                      |.++++++.|| ++.+||-.+++.....    .|++.|.+++|+||++.|++++.|.+++|||+.+.++           
T Consensus       202 G~~Fat~gsDg-ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~  280 (603)
T KOG0318|consen  202 GSRFATAGSDG-KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE  280 (603)
T ss_pred             CCeEEEecCCc-cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence            99999999998 9999999999877533    5889999999999999999999999999999875432           


Q ss_pred             ---------------------------------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC----
Q 013347          288 ---------------------------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS----  330 (444)
Q Consensus       288 ---------------------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~----  330 (444)
                                                       ..+.+|...|+++..+|++++|+++ +-++.+..|+.......    
T Consensus       281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~~~~g~~~~~~g  359 (603)
T KOG0318|consen  281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG-SYDGHINSWDSGSGTSDRLAG  359 (603)
T ss_pred             ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee-ccCceEEEEecCCcccccccc
Confidence                                             1123688899999999999999866 44566666665432110    


Q ss_pred             ----------------------cCCCcCC---------------CCccc-------------------ccccccCC----
Q 013347          331 ----------------------LDAHLLP---------------VDLPD-------------------IVSLTGSQ----  350 (444)
Q Consensus       331 ----------------------~~~~~~~---------------~~~~~-------------------~~~~~~~~----  350 (444)
                                            ++.+++.               ...++                   +..++.+.    
T Consensus       360 ~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~  439 (603)
T KOG0318|consen  360 KGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS  439 (603)
T ss_pred             ccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee
Confidence                                  0000000               00000                   00111111    


Q ss_pred             -----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE
Q 013347          351 -----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  425 (444)
Q Consensus       351 -----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~  425 (444)
                           ...+++++|+++.+|+|+.|      +.|+||.+..+.+..   ...+..|...|+++++|||++|     |++|
T Consensus       440 ~~~~y~~s~vAv~~~~~~vaVGG~D------gkvhvysl~g~~l~e---e~~~~~h~a~iT~vaySpd~~y-----la~~  505 (603)
T KOG0318|consen  440 IPIGYESSAVAVSPDGSEVAVGGQD------GKVHVYSLSGDELKE---EAKLLEHRAAITDVAYSPDGAY-----LAAG  505 (603)
T ss_pred             eccccccceEEEcCCCCEEEEeccc------ceEEEEEecCCcccc---eeeeecccCCceEEEECCCCcE-----EEEe
Confidence                 34678999999999999999      899999999876542   2235578999999999999998     8888


Q ss_pred             eccceeeeeeee
Q 013347          426 WSSGFCCTYPLI  437 (444)
Q Consensus       426 ~~~g~i~~~~~~  437 (444)
                      --++.+.+|++-
T Consensus       506 Da~rkvv~yd~~  517 (603)
T KOG0318|consen  506 DASRKVVLYDVA  517 (603)
T ss_pred             ccCCcEEEEEcc
Confidence            888999888864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=225.00  Aligned_cols=237  Identities=14%  Similarity=0.197  Sum_probs=201.6

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC---C-ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---K-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~  174 (444)
                      ..-|..++|+|.|+++|.|+-|+...||++.+..   . .......+|.+-+.++.|-+| .++++++.|.+..+||+++
T Consensus        97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen   97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET  175 (343)
T ss_pred             ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc
Confidence            3459999999999999999999999999998641   1 122223699999999999997 8999999999999999993


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCcee-eecC
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRG  252 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~  252 (444)
                      .                         .....|.+|. +.|.++.++| +++.+++|+.|+ ..++||++.+.+.+ +.+|
T Consensus       176 g-------------------------~~~~~f~GH~-gDV~slsl~p~~~ntFvSg~cD~-~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  176 G-------------------------QQTQVFHGHT-GDVMSLSLSPSDGNTFVSGGCDK-SAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             c-------------------------eEEEEecCCc-ccEEEEecCCCCCCeEEeccccc-ceeeeeccCcceeEeeccc
Confidence            3                         3566788996 8999999999 999999999998 99999999998776 6678


Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      ...|.+++|.|+|.-|++|++|++.++||++..+.....   .....|++++||..|++|+++. .+....+|+.     
T Consensus       229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDt-----  302 (343)
T KOG0286|consen  229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDT-----  302 (343)
T ss_pred             ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeec-----
Confidence            999999999999999999999999999999998774433   3345789999999999999763 4445555553     


Q ss_pred             CcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                              +..+.+..+.+|. .|+++..+|||.-+++||.|      .+++||.
T Consensus       303 --------lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD------s~lriW~  343 (343)
T KOG0286|consen  303 --------LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD------STLRIWA  343 (343)
T ss_pred             --------cccceEEEeeccCCeeEEEEECCCCcEEEecchh------HheeecC
Confidence                    1456677888999 99999999999999999998      8999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.2e-32  Score=256.58  Aligned_cols=281  Identities=21%  Similarity=0.320  Sum_probs=228.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ..|.++.|+++|+.+++++.++.+++|+... .+  ....+ .+|...|.+++|+|++..+++++.|++|+|||+.... 
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-  236 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEG-IKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-  236 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeeccc-ccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC-
Confidence            4799999999999999999999999999965 33  33333 5899999999999998899999999999999994211 


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                             .+.+++.+|. ..|++++|+|+|+.+++|+.|+ +|+|||++++++.. +..|.+.|
T Consensus       237 -----------------------~~~~~l~gH~-~~v~~~~f~p~g~~i~Sgs~D~-tvriWd~~~~~~~~~l~~hs~~i  291 (456)
T KOG0266|consen  237 -----------------------RNLKTLKGHS-TYVTSVAFSPDGNLLVSGSDDG-TVRIWDVRTGECVRKLKGHSDGI  291 (456)
T ss_pred             -----------------------eEEEEecCCC-CceEEEEecCCCCEEEEecCCC-cEEEEeccCCeEEEeeeccCCce
Confidence                                   3667888996 8999999999999999999998 99999999988776 66788999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce---eccccCCC--ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~--~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      .+++|++++++|++++.|+.|++||+.++..   ..+..+..  .++++.|+|++.+++++.. +..+..|++..     
T Consensus       292 s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~~~~~w~l~~-----  365 (456)
T KOG0266|consen  292 SGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DRTLKLWDLRS-----  365 (456)
T ss_pred             EEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CCeEEEEEccC-----
Confidence            9999999999999999999999999999983   34454444  5999999999999997744 35566666532     


Q ss_pred             CCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC-CCCCc
Q 013347          332 DAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPK  406 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~i~  406 (444)
                              ...+..+.+|.    .+.+...++.++++++++.|      +.|++|++.++..+     ..+.+| ...+.
T Consensus       366 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d------~~v~~~~~~s~~~~-----~~l~~h~~~~~~  426 (456)
T KOG0266|consen  366 --------GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED------GSVYVWDSSSGGIL-----QRLEGHSKAAVS  426 (456)
T ss_pred             --------CcceeeecccCCcceeEecccccCCCCeEEEEeCC------ceEEEEeCCccchh-----hhhcCCCCCcee
Confidence                    33444555554    34455568899999999999      99999999986654     678889 78889


Q ss_pred             ceeeeeCCCCCCCceEEEEe-ccceeeeeeee
Q 013347          407 PVAFSFHDKFKQGPLLSVCW-SSGFCCTYPLI  437 (444)
Q Consensus       407 ~v~~spdg~~~~~~~l~~~~-~~g~i~~~~~~  437 (444)
                      .++|+|..++.    ...++ .|+.+.+|...
T Consensus       427 ~~~~~~~~~~~----~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  427 DLSSHPTENLI----ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccccCCCcCee----eecCcCCCceEEEecCC
Confidence            99999988762    22222 47888888643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.3e-34  Score=244.07  Aligned_cols=239  Identities=15%  Similarity=0.269  Sum_probs=202.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|+++.|+++|.++++|+.+|.|++|+.+-  .....+...|...|.+++|+|+...+++++.||+|+|||....+.  
T Consensus       139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke--  214 (464)
T KOG0284|consen  139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE--  214 (464)
T ss_pred             ccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch--
Confidence            3699999999999999999999999999884  344444445669999999999989999999999999999984433  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                             .+.+++|. -.|.+++|+|...+|++++.|. .|++||.+++.++. +..|+..|..
T Consensus       215 -----------------------e~vL~GHg-wdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~HKntVl~  269 (464)
T KOG0284|consen  215 -----------------------ERVLRGHG-WDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGHKNTVLA  269 (464)
T ss_pred             -----------------------hheeccCC-CCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhccceEEE
Confidence                                   23467785 8999999999999999999998 99999999999886 7789999999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +.|+|++++|++++.|..++++|+++.+. ..+.+|...++++.|+|-..-|++.++.++.+..|.+..           
T Consensus       270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~-----------  338 (464)
T KOG0284|consen  270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL-----------  338 (464)
T ss_pred             EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc-----------
Confidence            99999999999999999999999996554 677899999999999998888887777777777777531           


Q ss_pred             CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                       +.+....-.+|. .|++++|+|-|.+||+|+.|      .++++|...
T Consensus       339 -~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd------~t~rfw~r~  380 (464)
T KOG0284|consen  339 -EEPLGEIPPAHDGEIWSLAYHPLGHILATGSND------RTVRFWTRN  380 (464)
T ss_pred             -cccccCCCcccccceeeeeccccceeEeecCCC------cceeeeccC
Confidence             111122223566 89999999999999999988      999999753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=245.55  Aligned_cols=285  Identities=18%  Similarity=0.287  Sum_probs=227.4

Q ss_pred             ceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .|..++|+..|.+||.|+. -|++-||++.+.  ....-..+|...+.+++++|||+.+++++.||.|+|||..      
T Consensus       309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~------  380 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ------  380 (893)
T ss_pred             eeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc------
Confidence            6889999999999999874 489999999963  2333336999999999999999889999999999999998      


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCC--eE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--LS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~--v~  257 (444)
                         ++                .|..++..|. ..|+.+.|+..|+.+++++.|| +|+.||+......+....+.+  ..
T Consensus       381 ---Sg----------------fC~vTFteHt-s~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p~Qfs  439 (893)
T KOG0291|consen  381 ---SG----------------FCFVTFTEHT-SGVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEPIQFS  439 (893)
T ss_pred             ---Cc----------------eEEEEeccCC-CceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCceeee
Confidence               33                5788899996 8999999999999999999998 999999999887776665554  56


Q ss_pred             EEEEecCCCeEEEEecCC-cEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          258 ILKWSPTGDYFFAAKFDG-TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      |++..|.|..+++|+.|. .|.+|++++|+. ..+.+|.++|.+++|+|.+..|++++ -|.+++.|++..         
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~---------  509 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFS---------  509 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeec---------
Confidence            788888899999998876 799999999998 56789999999999999999888663 445666666643         


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE-------E----eeeee----C
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS-------L----IGFIR----G  400 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~-------~----~~~~~----~  400 (444)
                         ....+.++.....+..++|+|||+.||++..|      |.|.+||.+.+......       .    ...+.    .
T Consensus       510 ---s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld------gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa  580 (893)
T KOG0291|consen  510 ---SSGTVETLEIRSDVLAVSFRPDGKELAVATLD------GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA  580 (893)
T ss_pred             ---cCceeeeEeeccceeEEEEcCCCCeEEEEEec------ceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence               22334455544478999999999999999998      99999998765433100       0    00011    1


Q ss_pred             CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          401 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       401 ~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      .+...+.+.+|+||++     +..|=.+..||+|++.-
T Consensus       581 ~~K~Ftti~ySaDG~~-----IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  581 KGKTFTTICYSADGKC-----ILAGGESNSICIYDVPE  613 (893)
T ss_pred             cCCceEEEEEcCCCCE-----EEecCCcccEEEEECch
Confidence            2356788999999987     44444778999998753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-32  Score=228.91  Aligned_cols=277  Identities=13%  Similarity=0.184  Sum_probs=228.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|+.+-|+|+-..+++++.|++|++||..+ ++....+ .+|.+.|.+++|+..|+.+++++.|-.+++||.+..     
T Consensus       110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~t-g~~e~~L-rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-----  182 (406)
T KOG0295|consen  110 SVTRVIFHPSEALVVSASEDATIKVFDTET-GELERSL-RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-----  182 (406)
T ss_pred             ceeeeeeccCceEEEEecCCceEEEEEccc-hhhhhhh-hccccceeEEEEecCccEEEecCCccchhheeHHHH-----
Confidence            699999999999999999999999999998 5554444 699999999999999988999999988999999721     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                         +.+.+.+.+|. ..|.++.|-|.|.++++++.|. +|+.|++.++.++. +.+|...|..+
T Consensus       183 -------------------~~c~ks~~gh~-h~vS~V~f~P~gd~ilS~srD~-tik~We~~tg~cv~t~~~h~ewvr~v  241 (406)
T KOG0295|consen  183 -------------------FRCIKSLIGHE-HGVSSVFFLPLGDHILSCSRDN-TIKAWECDTGYCVKTFPGHSEWVRMV  241 (406)
T ss_pred             -------------------HHHHHHhcCcc-cceeeEEEEecCCeeeeccccc-ceeEEecccceeEEeccCchHhEEEE
Confidence                               12344566674 7899999999999999999998 99999999998886 66788899999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC--------------EEEEEEcCCceEEEEEe
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR--------------MILLAFAGSLTLGSIHF  324 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~--------------~l~~~~~~~~~~~~~~~  324 (444)
                      +.+.||.++++++.|.+|++|-+.++++ ..+..|...|.+++|.|...              .+....+.|.+++.|++
T Consensus       242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv  321 (406)
T KOG0295|consen  242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV  321 (406)
T ss_pred             EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence            9999999999999999999999999877 45678999999999977421              23334444555555554


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  403 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  403 (444)
                      .             .+.++.++.+|. +|..++|+|.|+||+++.+|      +++++||+++++..     ..+..|..
T Consensus       322 ~-------------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD------ktlrvwdl~~~~cm-----k~~~ah~h  377 (406)
T KOG0295|consen  322 S-------------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD------KTLRVWDLKNLQCM-----KTLEAHEH  377 (406)
T ss_pred             c-------------CCeEEEEEecccceeeeeEEcCCCeEEEEEecC------CcEEEEEeccceee-----eccCCCcc
Confidence            2             568889999999 99999999999999999998      99999999987665     67778999


Q ss_pred             CCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          404 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       404 ~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      -++++.|..+--|     +.-|.-+..+.+|
T Consensus       378 fvt~lDfh~~~p~-----VvTGsVdqt~Kvw  403 (406)
T KOG0295|consen  378 FVTSLDFHKTAPY-----VVTGSVDQTVKVW  403 (406)
T ss_pred             eeEEEecCCCCce-----EEeccccceeeee
Confidence            9999999876544     4444444555544

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-32  Score=253.02  Aligned_cols=265  Identities=17%  Similarity=0.224  Sum_probs=213.7

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc-------cccccCCCCceEEEEEeeccCCCceE
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL-------GALSRGPGTRWTLVDFLRSQNGEQIT  215 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~  215 (444)
                      ...++|..|++|+..++.+-.|..|++|.+... ....+.......-       .......+..-...+.+.+|. ++|.
T Consensus       378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~-GPVy  455 (707)
T KOG0263|consen  378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS-GPVY  455 (707)
T ss_pred             CCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhhhccccccccchhhhhccccCCceeEEeecCC-Ccee
Confidence            457899999999765555556899999999832 2222221111110       111111122223455689996 9999


Q ss_pred             EEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccC
Q 013347          216 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSST  293 (444)
Q Consensus       216 ~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~  293 (444)
                      .+.|+|+.++|++++.|+ ++++|.+.+..+.. ..+|..+|+.+.|+|.|-+||+++.|++-++|.....+. +.+.+|
T Consensus       456 g~sFsPd~rfLlScSED~-svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh  534 (707)
T KOG0263|consen  456 GCSFSPDRRFLLSCSEDS-SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH  534 (707)
T ss_pred             eeeecccccceeeccCCc-ceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc
Confidence            999999999999999998 99999999988776 557889999999999999999999999999999988776 556799


Q ss_pred             CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCC
Q 013347          294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD  372 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~  372 (444)
                      .+.|.|+.|+|+..+++++ +.+.+++.|++.             ++..++.|.||. +|.+++|||+|++|++|+.|  
T Consensus       535 lsDV~cv~FHPNs~Y~aTG-SsD~tVRlWDv~-------------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed--  598 (707)
T KOG0263|consen  535 LSDVDCVSFHPNSNYVATG-SSDRTVRLWDVS-------------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDED--  598 (707)
T ss_pred             ccccceEEECCcccccccC-CCCceEEEEEcC-------------CCcEEEEecCCCCceEEEEEcCCCceEeecccC--
Confidence            9999999999999999987 444555555543             567788999999 99999999999999999999  


Q ss_pred             ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          373 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       373 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                          +.|.+||+.++.++     ..+.+|.+.|.++.||.||..     |++|--|..|.+|++....
T Consensus       599 ----~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS~dg~v-----Lasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  599 ----GLIKIWDLANGSLV-----KQLKGHTGTIYSLSFSRDGNV-----LASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ----CcEEEEEcCCCcch-----hhhhcccCceeEEEEecCCCE-----EEecCCCCeEEEEEchhhc
Confidence                99999999997776     678899999999999999875     8999999999999987543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3e-30  Score=261.94  Aligned_cols=291  Identities=12%  Similarity=0.164  Sum_probs=221.8

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCC---CCc--eeEEecCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEec
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---GKD--ACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAP  172 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~---~~~--~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~  172 (444)
                      ...|++++|+|+|++||+|+.|+.|+||+....   +..  .......+...|.+++|++. +..+++++.||+|++||+
T Consensus       483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~  562 (793)
T PLN00181        483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV  562 (793)
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence            456999999999999999999999999998641   110  01111234568999999875 466777888999999999


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeec
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~  251 (444)
                      ...                         .....+.+|. ..|.+++|+| ++.+|++++.|+ +|++||++++.......
T Consensus       563 ~~~-------------------------~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg-~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        563 ARS-------------------------QLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDG-SVKLWSINQGVSIGTIK  615 (793)
T ss_pred             CCC-------------------------eEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCC-EEEEEECCCCcEEEEEe
Confidence            732                         2445567775 8999999997 789999999998 99999999887766555


Q ss_pred             CCCCeEEEEEe-cCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          252 GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       252 ~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      +...+.++.|+ +++.+|++|+.|+.|++||+++.+.  ..+.+|...|.++.|. ++.++++++ .++.+..|++....
T Consensus       616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~  693 (793)
T PLN00181        616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSI  693 (793)
T ss_pred             cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCc
Confidence            66789999995 4799999999999999999987653  4567899999999997 667777654 44566666653210


Q ss_pred             CCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE------e--eeee
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL------I--GFIR  399 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~------~--~~~~  399 (444)
                             .......+.++.+|. .+..++|+|++++|++|+.|      +.|++|+...........      .  ....
T Consensus       694 -------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D------~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~  760 (793)
T PLN00181        694 -------SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET------NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVD  760 (793)
T ss_pred             -------cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC------CEEEEEECCCCCceEEEecccCCcccccccC
Confidence                   011234567788888 88999999999999999998      999999987543221100      0  0122


Q ss_pred             CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .+...|.+++|+|++++     |+.|.++|.|.+|++
T Consensus       761 ~~~~~V~~v~ws~~~~~-----lva~~~dG~I~i~~~  792 (793)
T PLN00181        761 DASQFISSVCWRGQSST-----LVAANSTGNIKILEM  792 (793)
T ss_pred             CCCcEEEEEEEcCCCCe-----EEEecCCCcEEEEec
Confidence            34567899999998875     788889999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.6e-30  Score=219.42  Aligned_cols=288  Identities=17%  Similarity=0.237  Sum_probs=214.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |.+++.+|+.+++|+|+.|..-.||++.+ +.....+ .+|.+.|+++.|+.+|.+|+++..+|.|+||...++.....+
T Consensus        67 vFavsl~P~~~l~aTGGgDD~AflW~~~~-ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~  144 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGGGDDLAFLWDIST-GEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL  144 (399)
T ss_pred             eEEEEeCCCCceEEecCCCceEEEEEccC-CcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence            99999999999999999999999999998 5555555 499999999999999888888888999999999855443332


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCceeeecCCCCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIRRGFGGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~~~~~~v~~~~  260 (444)
                      .                         .. ...+.=+.|+|-+..|+.|+.|| .+.+|.+.+ +.+..+.+|..++++=.
T Consensus       145 ~-------------------------~e-~~dieWl~WHp~a~illAG~~DG-svWmw~ip~~~~~kv~~Gh~~~ct~G~  197 (399)
T KOG0296|consen  145 D-------------------------QE-VEDIEWLKWHPRAHILLAGSTDG-SVWMWQIPSQALCKVMSGHNSPCTCGE  197 (399)
T ss_pred             e-------------------------cc-cCceEEEEecccccEEEeecCCC-cEEEEECCCcceeeEecCCCCCccccc
Confidence            2                         11 26788899999999999999998 999999998 55566778999999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEEEEcCCceEE--------EEEeecC-CC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLG--------SIHFASK-PP  329 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~--------~~~~~~~-~~  329 (444)
                      |.|+|+.++++..||+|++||+.++++.. +. .......++.++..+..++.+.. ++..+        ++...+. .+
T Consensus       198 f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~-e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  198 FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS-EGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             ccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC-CccEEEEccccceEEEecCCCCc
Confidence            99999999999999999999999988732 22 11223444555444443332211 11111        1111110 00


Q ss_pred             ----------------------------CcCCC--cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccce
Q 013347          330 ----------------------------SLDAH--LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL  378 (444)
Q Consensus       330 ----------------------------~~~~~--~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~  378 (444)
                                                  .++++  +|+.....++..-.|. +|..+.|-+ ..+|++++.+      |.
T Consensus       277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~------g~  349 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN------GK  349 (399)
T ss_pred             cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC------ce
Confidence                                        01111  2222223334444455 899999999 7889999988      99


Q ss_pred             EEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          379 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       379 i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      |+.||.++|++.     ..+.||...|.+++.+|++++     +.-...++...+|..
T Consensus       350 v~~wDaRtG~l~-----~~y~GH~~~Il~f~ls~~~~~-----vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  350 VRQWDARTGQLK-----FTYTGHQMGILDFALSPQKRL-----VVTVSDDNTALVFEV  397 (399)
T ss_pred             EEeeeccccceE-----EEEecCchheeEEEEcCCCcE-----EEEecCCCeEEEEec
Confidence            999999998886     689999999999999999886     444557788877764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-30  Score=203.80  Aligned_cols=257  Identities=14%  Similarity=0.150  Sum_probs=211.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|+++.|+-||++.++++.|.+|++|+... +...... .+|...|..++.+.|+.++.+++.|..+.+||++++     
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG-----   91 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG-----   91 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccC-----
Confidence            499999999999999999999999999987 6666666 599999999999999999999999999999999943     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee---cCCCCeE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGGLS  257 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~~~~~v~  257 (444)
                                          +..+.+++|. +.|+.++|+.+...+++|+.|. ++++||.++....+++   .....|.
T Consensus        92 --------------------kv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~  149 (307)
T KOG0316|consen   92 --------------------KVDRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVS  149 (307)
T ss_pred             --------------------eeeeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCcee
Confidence                                4667789996 8999999999999999999998 9999999987655543   3467888


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ++..+  +..+++|+.||+++.||++.|+... .....+|++++|+++++..++++-+ +.++.++-             
T Consensus       150 Si~v~--~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~-stlrLlDk-------------  212 (307)
T KOG0316|consen  150 SIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLD-STLRLLDK-------------  212 (307)
T ss_pred             EEEec--ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeecc-ceeeeccc-------------
Confidence            88875  6789999999999999999987632 1234589999999999998876432 44444442             


Q ss_pred             CCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC-CcceeeeeC
Q 013347          338 VDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN-PKPVAFSFH  413 (444)
Q Consensus       338 ~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-i~~v~~spd  413 (444)
                      .+++.++.+++|.   .-....++.....+++|++|      |.+++||+....++     ..+..++.. +.+++++|.
T Consensus       213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED------G~Vy~wdLvd~~~~-----sk~~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED------GKVYFWDLVDETQI-----SKLSVVSTVIVTDLSCHPT  281 (307)
T ss_pred             chhHHHHHhcccccceeeeeeeecccceeEEeccCC------ceEEEEEeccceee-----eeeccCCceeEEeeecccC
Confidence            2677888999987   34466788888899999999      99999999987665     345555555 788899886


Q ss_pred             C
Q 013347          414 D  414 (444)
Q Consensus       414 g  414 (444)
                      .
T Consensus       282 ~  282 (307)
T KOG0316|consen  282 M  282 (307)
T ss_pred             c
Confidence            3

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=8.2e-30  Score=205.83  Aligned_cols=267  Identities=16%  Similarity=0.198  Sum_probs=216.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      |.+++|+.+|..||+|+.|+++.+|+++...........+|.+.|-.++|+|... .+++++.|.+|++||+...+....
T Consensus        23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~  102 (313)
T KOG1407|consen   23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR  102 (313)
T ss_pred             ceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence            9999999999999999999999999998743333334468999999999988654 466677799999999996665554


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                      +...                           ..-..+.|+|+|++++.++.|. .|.+.|.++.+..........+.-++
T Consensus       103 i~~~---------------------------~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen  103 IETK---------------------------GENINITWSPDGEYIAVGNKDD-RITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             eecc---------------------------CcceEEEEcCCCCEEEEecCcc-cEEEEEecccceeehhcccceeeeee
Confidence            4432                           3345688999999999999998 99999999887777777778888999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      |+.++.+|+.....|+|.|.....-+. ..+..|.....|+.|+|+|+++|+|+.    +..+.+|+..          +
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~----------E  220 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVD----------E  220 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChh----------H
Confidence            998888887777789999999887666 567899999999999999999998854    3555665532          4


Q ss_pred             cccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCC
Q 013347          340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ  418 (444)
Q Consensus       340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~  418 (444)
                      .-+++.+..+. +|..++||.||++||++|+|      ..|-|=++++|..+.     .++ +.++...|+|+|..-   
T Consensus       221 LiC~R~isRldwpVRTlSFS~dg~~lASaSED------h~IDIA~vetGd~~~-----eI~-~~~~t~tVAWHPk~~---  285 (313)
T KOG1407|consen  221 LICERCISRLDWPVRTLSFSHDGRMLASASED------HFIDIAEVETGDRVW-----EIP-CEGPTFTVAWHPKRP---  285 (313)
T ss_pred             hhhheeeccccCceEEEEeccCcceeeccCcc------ceEEeEecccCCeEE-----Eee-ccCCceeEEecCCCc---
Confidence            56777888888 99999999999999999999      999999999988762     222 467778999999754   


Q ss_pred             CceEEEEec
Q 013347          419 GPLLSVCWS  427 (444)
Q Consensus       419 ~~~l~~~~~  427 (444)
                        +|+.+.+
T Consensus       286 --LLAyA~d  292 (313)
T KOG1407|consen  286 --LLAYACD  292 (313)
T ss_pred             --eeeEEec
Confidence              3555544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.8e-30  Score=241.70  Aligned_cols=276  Identities=14%  Similarity=0.185  Sum_probs=228.6

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|..++|+|...+++++-.+|.|++||..- +.....+ .+|.++|..+.|+|++..++++|.|-.|++|+....    
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----   83 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----   83 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccc----
Confidence            3588899999999999999999999999986 5555555 599999999999999888888888999999999832    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                           +++.++.+|- ..|..+.|++.-.+++++|.|- +|+||+..+++++. +.+|...|+|
T Consensus        84 ---------------------rclftL~GHl-DYVRt~~FHheyPWIlSASDDQ-TIrIWNwqsr~~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   84 ---------------------RCLFTLLGHL-DYVRTVFFHHEYPWILSASDDQ-TIRIWNWQSRKCIAVLTGHNHYVMC  140 (1202)
T ss_pred             ---------------------eehhhhcccc-ceeEEeeccCCCceEEEccCCC-eEEEEeccCCceEEEEecCceEEEe
Confidence                                 4667788996 8999999999999999999998 99999999999887 6788999999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce------------------------------eccccCCCceeEEEECCCCCE
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS------------------------------EPWSSTSGFVTGATWDPEGRM  308 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~------------------------------~~~~~~~~~v~~~~~sp~g~~  308 (444)
                      ..|+|....+++++-|.+||+||+..-+.                              ..+.+|+..|+-++|+|.-.+
T Consensus       141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl  220 (1202)
T KOG0292|consen  141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL  220 (1202)
T ss_pred             eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence            99999999999999999999999853110                              124488899999999999998


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      |++| ++|..+..|++...           +.-++.+..+|. .|.++-|+|...++++.+.|      ++|+|||+...
T Consensus       221 iVSG-~DDRqVKlWrmnet-----------KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~kR  282 (1202)
T KOG0292|consen  221 IVSG-ADDRQVKLWRMNET-----------KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTKR  282 (1202)
T ss_pred             EEec-CCcceeeEEEeccc-----------cceeehhhhcccCCcceEEecCccceeEecCCC------ccEEEEecccc
Confidence            8865 55566777775321           334567888998 99999999999999999999      99999999976


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      ..+     .+++-..++-+.++-+|..++     .++|-++|.+-
T Consensus       283 t~v-----~tfrrendRFW~laahP~lNL-----fAAgHDsGm~V  317 (1202)
T KOG0292|consen  283 TSV-----QTFRRENDRFWILAAHPELNL-----FAAGHDSGMIV  317 (1202)
T ss_pred             cce-----eeeeccCCeEEEEEecCCcce-----eeeecCCceEE
Confidence            554     556655677788888888775     45555555443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=5.5e-30  Score=244.47  Aligned_cols=304  Identities=17%  Similarity=0.254  Sum_probs=227.3

Q ss_pred             ceEEEEEecCCCeEEEEE--CCCeEEEEEccCCC----------CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347          101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSG----------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~--~dg~v~iw~~~~~~----------~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~  168 (444)
                      .|.+++.+|||..+|+|+  .|+.++||+.+.-.          .........|.+.|.|+.|+|||.+|++++.|+.|.
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~   94 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM   94 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence            489999999999999999  99999999886421          111112247999999999999999999999999999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  248 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~  248 (444)
                      ||............+.       -....-.+|++...+++|. ..|..++|+|++.+|++++.|+ +|.+||..+.+...
T Consensus        95 iW~~~~~~~~~~fgs~-------g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~Dn-sViiwn~~tF~~~~  165 (942)
T KOG0973|consen   95 IWERAEIGSGTVFGST-------GGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSLDN-SVIIWNAKTFELLK  165 (942)
T ss_pred             EeeecccCCccccccc-------ccccccceeeEEEEEecCC-CccceeccCCCccEEEEecccc-eEEEEccccceeee
Confidence            9998731000000000       0011235699999999996 8999999999999999999998 99999999987665


Q ss_pred             -eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc------cCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          249 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS------STSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       249 -~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                       +.+|.+.|..+.|+|-|+||++-+.|++|++|++...... .+.      ........+.|||||.+|++..+-.+...
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence             7789999999999999999999999999999997765542 222      23445789999999999998654333233


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCC-----CC------------EEEEEecCCCccccceEEEE
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS-----GE------------RLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd-----g~------------~l~~~~~d~~~~~d~~i~vw  382 (444)
                      .+.+-..          -+...-..+-||. ++..+.|+|-     .+            .+|+|+.|      ++|.||
T Consensus       246 ~~~IieR----------~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD------rSlSVW  309 (942)
T KOG0973|consen  246 TIAIIER----------GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD------RSLSVW  309 (942)
T ss_pred             eeEEEec----------CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC------ccEEEE
Confidence            3332111          1334455677888 9999999982     12            57788887      999999


Q ss_pred             EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      .....+.+  ..+..  --...|.+++|||||..     |-+|.-||+|.++.|--
T Consensus       310 ~T~~~RPl--~vi~~--lf~~SI~DmsWspdG~~-----LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  310 NTALPRPL--FVIHN--LFNKSIVDMSWSPDGFS-----LFACSLDGTVALIHFEE  356 (942)
T ss_pred             ecCCCCch--hhhhh--hhcCceeeeeEcCCCCe-----EEEEecCCeEEEEEcch
Confidence            98654332  01111  12567999999999875     77888899999988754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.4e-30  Score=216.59  Aligned_cols=236  Identities=18%  Similarity=0.298  Sum_probs=206.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|.+++|+..|++||+++.|-.+++||.+......... .+|...|.++.|-|.|.++++++.|.+|+.|+++       
T Consensus       152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-------  223 (406)
T KOG0295|consen  152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-------  223 (406)
T ss_pred             ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecc-------
Confidence            49999999999999999999999999998632333333 5899999999999999999999999999999998       


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                        ++                .++.++.+|. ..|..++.+.||..+++++.|. +|++|-+.++++.. +..|..+|.++
T Consensus       224 --tg----------------~cv~t~~~h~-ewvr~v~v~~DGti~As~s~dq-tl~vW~~~t~~~k~~lR~hEh~vEci  283 (406)
T KOG0295|consen  224 --TG----------------YCVKTFPGHS-EWVRMVRVNQDGTIIASCSNDQ-TLRVWVVATKQCKAELREHEHPVECI  283 (406)
T ss_pred             --cc----------------eeEEeccCch-HhEEEEEecCCeeEEEecCCCc-eEEEEEeccchhhhhhhccccceEEE
Confidence              33                5778899997 7999999999999999999998 99999999998765 66788999999


Q ss_pred             EEecC---------------CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          260 KWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       260 ~~sp~---------------~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      +|.|.               ++++.+++.|++|++||+.++.+ .++.+|..+|..++|+|.|++|+++ .++.++++|+
T Consensus       284 ~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwd  362 (406)
T KOG0295|consen  284 AWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWD  362 (406)
T ss_pred             EecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEE
Confidence            99872               25889999999999999999988 6788999999999999999999955 5567788887


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      +.             ..++.+++..|. -++++.|+.+-.++++|+-|      .++++|..
T Consensus       363 l~-------------~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd------qt~KvwEc  405 (406)
T KOG0295|consen  363 LK-------------NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWEC  405 (406)
T ss_pred             ec-------------cceeeeccCCCcceeEEEecCCCCceEEecccc------ceeeeeec
Confidence            75             356677777888 89999999999999999998      89999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=221.90  Aligned_cols=295  Identities=13%  Similarity=0.152  Sum_probs=212.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCC---CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .|.++++.|.|-+|++|+.|.+|++||+....   +.-..+.......|.+++|++.|..+|+.+.....+|+|-+.. .
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~-~  247 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF-E  247 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCc-e
Confidence            49999999999999999999999999998541   1122232345568999999999999999999999999997622 2


Q ss_pred             cceeeccccccccccccCCCCceE-EEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce-eeecC--
Q 013347          178 AASVRSGAASFLGALSRGPGTRWT-LVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT-PIRRG--  252 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~--  252 (444)
                      ......|             +++. -....+||. ..++|.+|+|+. ..+++++.|| ++++||+...+.. .+..+  
T Consensus       248 ~~e~~KG-------------DQYI~Dm~nTKGHi-a~lt~g~whP~~k~~FlT~s~Dg-tlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  248 IVEFSKG-------------DQYIRDMYNTKGHI-AELTCGCWHPDNKEEFLTCSYDG-TLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             eeeeecc-------------chhhhhhhccCCce-eeeeccccccCcccceEEecCCC-cEEEEecCCchhheeEEeecc
Confidence            2222111             1111 123456775 899999999954 5688999998 9999999876433 22222  


Q ss_pred             ----CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee----ccccCCC--ceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          253 ----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       253 ----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~--~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                          .-.++.++|+|||+.||+|+.||.|.+|+..+....    .-..|..  .|+|++||++|++|++- +.+..+..|
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR-g~D~tLKvW  391 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR-GFDDTLKVW  391 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc-cCCCceeee
Confidence                246889999999999999999999999998654432    2236666  89999999999999965 444667777


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR  399 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  399 (444)
                      ++.+.            .+++....+-.   +-+.++|||+.++|++|..--+.-..|++.+||..+-..+     ..+.
T Consensus       392 DLrq~------------kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-----~ki~  454 (641)
T KOG0772|consen  392 DLRQF------------KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-----YKID  454 (641)
T ss_pred             ecccc------------ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-----EEec
Confidence            76543            22333333322   5678999999999999876543323378999998874444     3344


Q ss_pred             CCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      -....|..+.|+|.=+.     +.++..||.+++|
T Consensus       455 i~~aSvv~~~WhpkLNQ-----i~~gsgdG~~~vy  484 (641)
T KOG0772|consen  455 ISTASVVRCLWHPKLNQ-----IFAGSGDGTAHVY  484 (641)
T ss_pred             CCCceEEEEeecchhhh-----eeeecCCCceEEE
Confidence            44666778899986443     5667778888765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.6e-30  Score=214.92  Aligned_cols=277  Identities=15%  Similarity=0.147  Sum_probs=223.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-------ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-------TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-------~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      -+-|..|||||++|++|+.||.|.+|+..+ ++...-+       ..-+..+|.|+.||.|...+++++.||.|++|.+.
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            378999999999999999999999999987 4332211       12478899999999997778888889999999999


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eec
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRR  251 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~  251 (444)
                      ++...                         +.+. .| ...|+|+.|+.|+..+++++.|. ++++.-++++++.. +.+
T Consensus       294 tG~Cl-------------------------RrFdrAH-tkGvt~l~FSrD~SqiLS~sfD~-tvRiHGlKSGK~LKEfrG  346 (508)
T KOG0275|consen  294 TGQCL-------------------------RRFDRAH-TKGVTCLSFSRDNSQILSASFDQ-TVRIHGLKSGKCLKEFRG  346 (508)
T ss_pred             cchHH-------------------------HHhhhhh-ccCeeEEEEccCcchhhcccccc-eEEEeccccchhHHHhcC
Confidence            55443                         3344 45 48999999999999999999998 99999999999876 778


Q ss_pred             CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      |.+.|....|.+||.++++++.||+|++|+.++.++. ++.  +....|+++-.-|.+.--++.|....+++++.+    
T Consensus       347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~----  422 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM----  422 (508)
T ss_pred             ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec----
Confidence            8999999999999999999999999999999998883 333  566778888888866543334566677888876    


Q ss_pred             CCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN  404 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  404 (444)
                                .++.++++....    ...+...||.|.++.+.+.|      +.++.|...+|++.     .++.-|...
T Consensus       423 ----------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED------~vlYCF~~~sG~LE-----~tl~VhEkd  481 (508)
T KOG0275|consen  423 ----------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED------GVLYCFSVLSGKLE-----RTLPVHEKD  481 (508)
T ss_pred             ----------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC------cEEEEEEeecCcee-----eeeeccccc
Confidence                      456666665433    56677899999999999999      99999999988876     567778888


Q ss_pred             CcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +..++-+|.-+.     ++.=.+||.+.+|.
T Consensus       482 vIGl~HHPHqNl-----lAsYsEDgllKLWk  507 (508)
T KOG0275|consen  482 VIGLTHHPHQNL-----LASYSEDGLLKLWK  507 (508)
T ss_pred             ccccccCcccch-----hhhhcccchhhhcC
Confidence            889999998665     33334677777663

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2e-28  Score=198.90  Aligned_cols=243  Identities=16%  Similarity=0.321  Sum_probs=190.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|.|++||++|.|.++.||.-............+|.+.|.+++|+++|++|++++.|..|-||.+..     
T Consensus        62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-----  136 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-----  136 (312)
T ss_pred             heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-----
Confidence            359999999999999999999999999888643333334469999999999999999999999999999999872     


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC----ceeeecCCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGG  255 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~~~  255 (444)
                                       ++.+.+...++.|. ..|..+.|+|...+|+++++|+ +|++|+-..+.    ...+.+|...
T Consensus       137 -----------------ddEfec~aVL~~Ht-qDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~dddW~c~~tl~g~~~T  197 (312)
T KOG0645|consen  137 -----------------DDEFECIAVLQEHT-QDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDDDDWECVQTLDGHENT  197 (312)
T ss_pred             -----------------CCcEEEEeeecccc-ccccEEEEcCCcceeEEeccCC-eEEEEeecCCCCeeEEEEecCccce
Confidence                             33556788899997 7999999999999999999998 99999877332    3346678889


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      |.+++|+|.|..|++++.|++++||...+.   .-..|...++.+.|. + ..|++++ ++..+..++-...+   +.. 
T Consensus       198 VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~-~~IaS~g-gD~~i~lf~~s~~~---d~p-  267 (312)
T KOG0645|consen  198 VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD-N-GVIASGG-GDDAIRLFKESDSP---DEP-  267 (312)
T ss_pred             EEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec-c-cceEecc-CCCEEEEEEecCCC---CCc-
Confidence            999999999999999999999999986632   122467889999998 3 3456554 44555655543211   111 


Q ss_pred             CCCCccccc-ccccCC-ceeEEEECCC-CCEEEEEecCCCccccceEEEEEcC
Q 013347          336 LPVDLPDIV-SLTGSQ-GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       336 ~~~~~~~~~-~~~~~~-~v~~~~~spd-g~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                         ....+. .-..|. .|++++|.|. ..+|++++.|      |.|++|.+.
T Consensus       268 ---~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD------G~v~~W~l~  311 (312)
T KOG0645|consen  268 ---SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD------GIVNFWELE  311 (312)
T ss_pred             ---hHHHHHhhhcccccccceEEEcCCCCCceeecCCC------ceEEEEEec
Confidence               111111 223466 8999999995 6789999888      999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.4e-29  Score=211.69  Aligned_cols=295  Identities=15%  Similarity=0.220  Sum_probs=224.8

Q ss_pred             cccccCCC-CccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe---EEE
Q 013347           85 IKPLLHPD-HVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR---SLS  160 (444)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~---ll~  160 (444)
                      +.....|. ...+++..-|.++...  +++|++|++||.++||+..  |+...++ .+|.++|.+++|.-.+..   +++
T Consensus        90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~--Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvs  164 (423)
T KOG0313|consen   90 VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK--GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVS  164 (423)
T ss_pred             EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecC--CceEEEE-ecCCcceeeeEEEecCCccceEEE
Confidence            34444443 3333444457777776  7899999999999999998  6666666 599999999998544344   899


Q ss_pred             EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347          161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  240 (444)
Q Consensus       161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd  240 (444)
                      ++.|.++++|.++.+.....                     ....-+||. ..|.++...++|..+++|+.|. +|.+|+
T Consensus       165 as~Dqtl~Lw~~~~~~~~~~---------------------~~~~~~GHk-~~V~sVsv~~sgtr~~SgS~D~-~lkiWs  221 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKVK---------------------ALKVCRGHK-RSVDSVSVDSSGTRFCSGSWDT-MLKIWS  221 (423)
T ss_pred             ecCCceEEEEEecCchhhhh---------------------HHhHhcccc-cceeEEEecCCCCeEEeecccc-eeeecc
Confidence            99999999999984433222                     122234785 8999999999999999999998 999999


Q ss_pred             cCCC--------------------------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347          241 VAQG--------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS  294 (444)
Q Consensus       241 ~~~~--------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  294 (444)
                      ..+.                          ....+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.........
T Consensus       222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~  300 (423)
T KOG0313|consen  222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN  300 (423)
T ss_pred             cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC
Confidence            3321                          1123567889999999997 667899999999999999999987666677


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCC
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGD  372 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~  372 (444)
                      ..+++++++|..++|+++++    +..+++|+.+..       ......+++.+|. .|.++.|+|... .|++++.|  
T Consensus       301 ksl~~i~~~~~~~Ll~~gss----dr~irl~DPR~~-------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D--  367 (423)
T KOG0313|consen  301 KSLNCISYSPLSKLLASGSS----DRHIRLWDPRTG-------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD--  367 (423)
T ss_pred             cceeEeecccccceeeecCC----CCceeecCCCCC-------CCceeEEeeecchhhhhheecCCCCceEEEEEecC--
Confidence            88999999999999887743    466777765321       1233456788999 999999999764 57788877  


Q ss_pred             ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          373 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       373 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                          +++++||+++.+    .++..+.+|.+.|.++.|+.-+      ++.-|--|.+|++|.
T Consensus       368 ----~t~klWDvRS~k----~plydI~~h~DKvl~vdW~~~~------~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  368 ----NTVKLWDVRSTK----APLYDIAGHNDKVLSVDWNEGG------LIVSGGADNKLRIFK  416 (423)
T ss_pred             ----CeEEEEEeccCC----CcceeeccCCceEEEEeccCCc------eEEeccCcceEEEec
Confidence                999999999743    2456888999999999997532      345555677777765

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.1e-29  Score=223.93  Aligned_cols=274  Identities=13%  Similarity=0.156  Sum_probs=227.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.++.|+|...+++++-.+|.|.|||.++ ......+ .-...+|.+..|-+--+.+++++.|..|++|+.++.     
T Consensus        15 RVKsVd~HPtePw~la~LynG~V~IWnyet-qtmVksf-eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~-----   87 (794)
T KOG0276|consen   15 RVKSVDFHPTEPWILAALYNGDVQIWNYET-QTMVKSF-EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG-----   87 (794)
T ss_pred             ceeeeecCCCCceEEEeeecCeeEEEeccc-ceeeeee-eecccchhhheeeeccceEEEecCCceEEEEecccc-----
Confidence            499999999999999999999999999997 3444443 355779999999888677888888899999999832     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-c-eeeecCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-G-TPIRRGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~-~~~~~~~~~v~~  258 (444)
                                          ..+..+..|. ..|.+++.+|...++++++.|- +|++||.+..- + +...+|...|++
T Consensus        88 --------------------ekV~~FeAH~-DyIR~iavHPt~P~vLtsSDDm-~iKlW~we~~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   88 --------------------EKVKTFEAHS-DYIRSIAVHPTLPYVLTSSDDM-TIKLWDWENEWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             --------------------eeeEEeeccc-cceeeeeecCCCCeEEecCCcc-EEEEeeccCceeeeeEEcCcceEEEE
Confidence                                4567788896 8999999999999999999997 99999998763 2 346678899999


Q ss_pred             EEEec-CCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCC--CEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          259 LKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       259 ~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ++|+| |.+.+++++-|++|++|.+.+..+ .++.+|...|+|+.|-+.|  .+|+++ +++..+.+|++.         
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-aDD~tiKvWDyQ---------  215 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-ADDLTIKVWDYQ---------  215 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-CCCceEEEeecc---------
Confidence            99999 678899999999999999988777 6788999999999998765  577755 555677777764         


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                          +..+++++.||. .|..+.|+|.=.++++|+.|      |+++||+..+-++.     .++.-..+++++++-.+.
T Consensus       216 ----tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED------GTvriWhs~Ty~lE-----~tLn~gleRvW~I~~~k~  280 (794)
T KOG0276|consen  216 ----TKSCVQTLEGHTNNVSFVFFHPELPIIISGSED------GTVRIWNSKTYKLE-----KTLNYGLERVWCIAAHKG  280 (794)
T ss_pred             ----hHHHHHHhhcccccceEEEecCCCcEEEEecCC------ccEEEecCcceehh-----hhhhcCCceEEEEeecCC
Confidence                567899999999 99999999999999999999      99999998874433     344444677888887665


Q ss_pred             CCCCCCceEEEEeccceeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCT  433 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~  433 (444)
                      ++.     +++|++.|.|.+
T Consensus       281 ~~~-----i~vG~Deg~i~v  295 (794)
T KOG0276|consen  281 DGK-----IAVGFDEGSVTV  295 (794)
T ss_pred             CCe-----EEEeccCCcEEE
Confidence            443     788888888763

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.9e-29  Score=228.80  Aligned_cols=319  Identities=17%  Similarity=0.192  Sum_probs=227.3

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe--EEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~dg~v~iw~~~~~~  176 (444)
                      +.+|.-++|+|.|..+++|+.|+.++|||+.. +.....+ .+|++.|.++.|+|+-.+  |++++.|+++++||+....
T Consensus       105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~  182 (775)
T KOG0319|consen  105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKN-GYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR  182 (775)
T ss_pred             CCCeEEEEEcCCCceEEeccccceEEEEEeeC-CEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence            55899999999999999999999999999996 4444444 699999999999998554  4556668999999998544


Q ss_pred             CcceeeccccccccccccCCC----------CceEEEEEeec------cCCCceEEEEEccC-----CCeEEEEeeCCCe
Q 013347          177 NAASVRSGAASFLGALSRGPG----------TRWTLVDFLRS------QNGEQITALSWGPD-----GRYLASASYESSS  235 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------~~~~~v~~~~~sp~-----~~~l~~~~~d~~~  235 (444)
                      ..........+.+..+.+..+          ....++...+.      .....+-++.+-++     |.++++++.+| .
T Consensus       183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g-~  261 (775)
T KOG0319|consen  183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG-V  261 (775)
T ss_pred             hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc-e
Confidence            422222333333333333322          22222221110      01124455555555     55677777666 7


Q ss_pred             EEEEEcCCC-----------------------------------------------------------------------
Q 013347          236 FTIWDVAQG-----------------------------------------------------------------------  244 (444)
Q Consensus       236 i~iwd~~~~-----------------------------------------------------------------------  244 (444)
                      +++||.+++                                                                       
T Consensus       262 ~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laV  341 (775)
T KOG0319|consen  262 VQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAV  341 (775)
T ss_pred             EEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEE
Confidence            777766544                                                                       


Q ss_pred             ---------------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECC
Q 013347          245 ---------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDP  304 (444)
Q Consensus       245 ---------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp  304 (444)
                                     .+..+.+|...|.++....+|-+|++|+.|.++++|.++.+..     ....+|.+.|.+++++.
T Consensus       342 ATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~  421 (775)
T KOG0319|consen  342 ATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK  421 (775)
T ss_pred             EeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence                           2334556777888888556788999999999999999855443     23458999999999998


Q ss_pred             CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      .+.-++++.+.|.++..|.+...   .+... +.......+...|. .|++++++|+.+++||||.|      .+.+||+
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s---~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD------ktaKiW~  491 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKS---KETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD------KTAKIWD  491 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCc---ccccc-cceehhhHHHHhhcccccceEecCCCceEEecccc------cceeeec
Confidence            88777777777777777766431   11100 11122222445677 99999999999999999999      9999999


Q ss_pred             cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      ++...+     ..++.||...|++|.|+|..+.     |+-|..|++|.+|.+--++
T Consensus       492 le~~~l-----~~vLsGH~RGvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~fS  538 (775)
T KOG0319|consen  492 LEQLRL-----LGVLSGHTRGVWCVSFSKNDQL-----LATCSGDKTVKIWSISTFS  538 (775)
T ss_pred             ccCceE-----EEEeeCCccceEEEEeccccce-----eEeccCCceEEEEEeccce
Confidence            996544     4789999999999999998775     8888999999999987654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-28  Score=198.71  Aligned_cols=282  Identities=11%  Similarity=0.133  Sum_probs=217.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +++-+.++.+|.+|.+++.|.+..||--.+ +...-.. .+|.+.|+++..+-+.+.+++++.|.++++||+++++....
T Consensus        12 plTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~   89 (327)
T KOG0643|consen   12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT   89 (327)
T ss_pred             ccceEEecCCCcEEEEecCCCCceEEEecC-Cceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE
Confidence            389999999999999999999999997765 5555555 59999999999999989999999999999999997766555


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC----CeEEEEEcCCC-------C-cee
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQG-------L-GTP  248 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~~i~iwd~~~~-------~-~~~  248 (444)
                      ...+                           ..|..+.|+++|++++....+.    +.|.++|++..       + ...
T Consensus        90 ~k~~---------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k  142 (327)
T KOG0643|consen   90 WKTN---------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK  142 (327)
T ss_pred             eecC---------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence            5443                           6899999999999888765431    27999999843       3 234


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      +..+.+.++.+-|.|-+++|++|.+||.|.+||+++++.  ..-..|...|+.+.++|+..+++++ +.+.+-..+++. 
T Consensus       143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~-s~Dttakl~D~~-  220 (327)
T KOG0643|consen  143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG-SKDTTAKLVDVR-  220 (327)
T ss_pred             ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec-ccCccceeeecc-
Confidence            556678899999999999999999999999999999876  3345788999999999999999876 444566666654 


Q ss_pred             CCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe-------EEEEEeeeee
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-------ISLSLIGFIR  399 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~  399 (444)
                                  +...++++....+|++.+++|....++.++....    ..|.-=+.+.++.       +....+..++
T Consensus       221 ------------tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA----~dVTTT~~r~GKFEArFyh~i~eEEigrvk  284 (327)
T KOG0643|consen  221 ------------TLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA----MDVTTTSTRAGKFEARFYHLIFEEEIGRVK  284 (327)
T ss_pred             ------------ceeeEEEeeecccccceecccccceEEecCCcee----eeeeeecccccchhhhHHHHHHHHHhcccc
Confidence                        4566777777779999999998877776643210    1111111111211       0011246788


Q ss_pred             CCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ||-++|.+|+|+|||+.     -+.|-++|.|++.
T Consensus       285 GHFGPINsvAfhPdGks-----YsSGGEDG~VR~h  314 (327)
T KOG0643|consen  285 GHFGPINSVAFHPDGKS-----YSSGGEDGYVRLH  314 (327)
T ss_pred             ccccCcceeEECCCCcc-----cccCCCCceEEEE
Confidence            99999999999999986     3455578877754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.9e-29  Score=228.84  Aligned_cols=279  Identities=12%  Similarity=0.191  Sum_probs=228.5

Q ss_pred             ceEEEEE-ecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSW-HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~-sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .|.++.| .|+.++||+++..+.+++|+..+.   .+.+..+|.+.|.++....+|-.+++++.|.++++|.++......
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~  401 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS  401 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh
Confidence            5788776 468899999999999999988763   333447999999999955565677888889999999995222111


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce----------e
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT----------P  248 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~----------~  248 (444)
                                           .+.....+|. ..|.+++++..+ .+|+++|.|. ++++|++...+..          .
T Consensus       402 ---------------------~~~a~~~gH~-~svgava~~~~~asffvsvS~D~-tlK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  402 ---------------------LCVAQANGHT-NSVGAVAGSKLGASFFVSVSQDC-TLKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             ---------------------hhhhhhcccc-cccceeeecccCccEEEEecCCc-eEEEecCCCcccccccceehhhHH
Confidence                                 1233456775 899999997644 5788999998 9999999873211          1


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      ...|...|.+++.+|+.+++++|+.|++.+||++..... ..+.+|...++++.|+|..+.++++ +.|.++++|.+.  
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is--  535 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC-SGDKTVKIWSIS--  535 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec-cCCceEEEEEec--
Confidence            235789999999999999999999999999999997666 5688999999999999999988855 566777777765  


Q ss_pred             CCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  406 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~  406 (444)
                                 +..+++++.||. .|..+.|-.+|+.|++++.|      |.|++|++++++..     +++.+|.+.|+
T Consensus       536 -----------~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad------GliKlWnikt~eC~-----~tlD~H~DrvW  593 (775)
T KOG0319|consen  536 -----------TFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD------GLIKLWNIKTNECE-----MTLDAHNDRVW  593 (775)
T ss_pred             -----------cceeeeeecCccceeEeeeeeeCCcEEEeccCC------CcEEEEeccchhhh-----hhhhhccceeE
Confidence                       578999999999 99999999999999999999      99999999987765     78999999999


Q ss_pred             ceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       407 ~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +++-+|++.+     ..-|-.||+|.+|.
T Consensus       594 aL~~~~~~~~-----~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  594 ALSVSPLLDM-----FVTGGGDGRIIFWK  617 (775)
T ss_pred             EEeecCccce-----eEecCCCeEEEEee
Confidence            9999998765     44456789998885

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.3e-30  Score=204.86  Aligned_cols=278  Identities=15%  Similarity=0.201  Sum_probs=228.2

Q ss_pred             ceEEEEEec---CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp---~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      +|-.++|||   +|-+|++++.|+.-.+-+-++ +..+-.+ .+|.+.|++...+.+..+-++++.|=+-++||.-++..
T Consensus        16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-gdwigtf-eghkgavw~~~l~~na~~aasaaadftakvw~a~tgde   93 (334)
T KOG0278|consen   16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-GDWIGTF-EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE   93 (334)
T ss_pred             ceeEEeccCCCCCceEEEEeccCCCchhccCCC-CCcEEee-eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh
Confidence            488899985   899999999999988887777 6666666 59999999999999866666777788999999874443


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGG  255 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~  255 (444)
                      ...                         +. | .--|..++|+.|.++|++|+.+. .++|||++..+..+  +.+|.+.
T Consensus        94 lhs-------------------------f~-h-khivk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   94 LHS-------------------------FE-H-KHIVKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             hhh-------------------------hh-h-hheeeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCCCc
Confidence            322                         22 2 24789999999999999999998 99999998876543  6788999


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      |..+.|....+.|++.+.|++||+||.++++..........|+++.++++|++|.++.+.  .   +.+|+..       
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs--s---V~Fwdak-------  213 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS--S---VKFWDAK-------  213 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc--e---eEEeccc-------
Confidence            999999998999999999999999999999986666677889999999999998876543  2   3344321       


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                         ....++.++....|.+.+.+|+...+++|+.|      ..++.||..+++.+.    ...++|-++|-+|.|||||.
T Consensus       214 ---sf~~lKs~k~P~nV~SASL~P~k~~fVaGged------~~~~kfDy~TgeEi~----~~nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  214 ---SFGLLKSYKMPCNVESASLHPKKEFFVAGGED------FKVYKFDYNTGEEIG----SYNKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             ---cccceeeccCccccccccccCCCceEEecCcc------eEEEEEeccCCceee----ecccCCCCceEEEEECCCCc
Confidence               34555565555589999999999999999988      999999999988762    12479999999999999987


Q ss_pred             CCCCceEEEEeccceeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      .     -+.|..||+|.+|....
T Consensus       281 ~-----yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  281 L-----YASGSEDGTIRLWQTTP  298 (334)
T ss_pred             e-----eeccCCCceEEEEEecC
Confidence            5     78899999999998764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.7e-29  Score=231.26  Aligned_cols=238  Identities=14%  Similarity=0.255  Sum_probs=190.4

Q ss_pred             ccccceEEEEEecCCCeEEEEECCCeEEEEEccCC----------------------------CC---------------
Q 013347           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------------------------GK---------------  133 (444)
Q Consensus        97 ~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----------------------------~~---------------  133 (444)
                      .+...|+++.||+||+|||+|+.|+.|+||.+...                            ..               
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            44557999999999999999999999999998650                            00               


Q ss_pred             cee---------------EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          134 DAC---------------ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       134 ~~~---------------~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      ...               ....+|.+.|.+|.||.+ +.||+++.|.+|+||++...                       
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~-----------------------  400 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK-----------------------  400 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc-----------------------
Confidence            000               011289999999999999 89999999999999999833                       


Q ss_pred             ceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcE
Q 013347          199 RWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  277 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v  277 (444)
                        .+++.|. | ...|+|++|+| |.++|++|+-|+ .|+||++...+.........-|++++|.|||++.+.|+.+|.+
T Consensus       401 --~CL~~F~-H-ndfVTcVaFnPvDDryFiSGSLD~-KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C  475 (712)
T KOG0283|consen  401 --ECLKVFS-H-NDFVTCVAFNPVDDRYFISGSLDG-KVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYC  475 (712)
T ss_pred             --ceeeEEe-c-CCeeEEEEecccCCCcEeeccccc-ceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEE
Confidence              3444444 3 37999999999 899999999998 9999999988887777778999999999999999999999999


Q ss_pred             EEEECCCCceec---cc-------cCCCceeEEEECCCCC--EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc
Q 013347          278 YLWETNTWTSEP---WS-------STSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  345 (444)
Q Consensus       278 ~iwd~~~~~~~~---~~-------~~~~~v~~~~~sp~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (444)
                      ++|++...+.+.   +.       .|. .|+.+.|.|...  .|++  +.|.+|++++..             +...+..
T Consensus       476 ~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT--SnDSrIRI~d~~-------------~~~lv~K  539 (712)
T KOG0283|consen  476 RFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT--SNDSRIRIYDGR-------------DKDLVHK  539 (712)
T ss_pred             EEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe--cCCCceEEEecc-------------chhhhhh
Confidence            999998776522   11       233 799999998654  4443  345777777753             2345666


Q ss_pred             cccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          346 LTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       346 ~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ++|..   .-....|+.||++|+++++|      ..|++|+..
T Consensus       540 fKG~~n~~SQ~~Asfs~Dgk~IVs~seD------s~VYiW~~~  576 (712)
T KOG0283|consen  540 FKGFRNTSSQISASFSSDGKHIVSASED------SWVYIWKND  576 (712)
T ss_pred             hcccccCCcceeeeEccCCCEEEEeecC------ceEEEEeCC
Confidence            77654   44567899999999999988      899999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=231.83  Aligned_cols=240  Identities=21%  Similarity=0.384  Sum_probs=197.5

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|+++++++++.|++++|||+...+.....+ .+|...|++++|+|+++.+++++.|++|+|||++.     
T Consensus       204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-----  277 (456)
T KOG0266|consen  204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-----  277 (456)
T ss_pred             cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-----
Confidence            479999999999999999999999999995544555565 59999999999999997888888899999999983     


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc--e-eeecCCC--
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--T-PIRRGFG--  254 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~--~-~~~~~~~--  254 (444)
                          +                .+...+.+|. ..|++++|++++++|++++.|+ .|++||+.++..  . .+..+..  
T Consensus       278 ----~----------------~~~~~l~~hs-~~is~~~f~~d~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~  335 (456)
T KOG0266|consen  278 ----G----------------ECVRKLKGHS-DGISGLAFSPDGNLLVSASYDG-TIRVWDLETGSKLCLKLLSGAENSA  335 (456)
T ss_pred             ----C----------------eEEEeeeccC-CceEEEEECCCCCEEEEcCCCc-cEEEEECCCCceeeeecccCCCCCC
Confidence                2                4677788996 7999999999999999999998 999999999983  2 3344433  


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc---eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF---VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~---v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      .+++++|+|++.++++++.|+.+++||+..++. ..+.+|...   +.+...++.++++++++ .+..+..|++.     
T Consensus       336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~-----  409 (456)
T KOG0266|consen  336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSS-----  409 (456)
T ss_pred             ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCC-----
Confidence            589999999999999999999999999998876 455566553   44556678899988764 44556666542     


Q ss_pred             cCCCcCCCCcccccccccC-C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          331 LDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~-~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                              ....+..+.+| . .+..+.++|..+++++++.+.    |+.+++|..+
T Consensus       410 --------s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~----d~~~~~w~~~  454 (456)
T KOG0266|consen  410 --------SGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG----DGLIRLWKYD  454 (456)
T ss_pred             --------ccchhhhhcCCCCCceeccccCCCcCeeeecCcCC----CceEEEecCC
Confidence                    35566778888 5 889999999999999998543    2899999865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.1e-27  Score=195.22  Aligned_cols=260  Identities=14%  Similarity=0.205  Sum_probs=206.8

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec--CCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~~~~  177 (444)
                      ..|.++.|+++|.++++++.|.+++|||..+ ++....+. .+.-.|..+.|......++.++.  |.+|+..++.+.  
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--   90 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--   90 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC--
Confidence            4599999999999999999999999999998 56666553 55567888889777677877776  789999998732  


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                                             +.++.+.||. ..|.+++.+|-+..+++++.|+ +|++||++..+++-+....+. .
T Consensus        91 -----------------------kylRYF~GH~-~~V~sL~~sP~~d~FlS~S~D~-tvrLWDlR~~~cqg~l~~~~~-p  144 (311)
T KOG1446|consen   91 -----------------------KYLRYFPGHK-KRVNSLSVSPKDDTFLSSSLDK-TVRLWDLRVKKCQGLLNLSGR-P  144 (311)
T ss_pred             -----------------------ceEEEcCCCC-ceEEEEEecCCCCeEEecccCC-eEEeeEecCCCCceEEecCCC-c
Confidence                                   4678899997 8999999999999999999998 999999998888776554333 3


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce---eccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      .++|+|+|-++|++.....|++||++.-..   ..+.   +.....+.+.|||+|++|+.+... +.++.++-.      
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf------  217 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAF------  217 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEcc------
Confidence            478999999999998888999999987533   2222   445678999999999999977554 556666643      


Q ss_pred             CCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-CCCCCc
Q 013347          332 DAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPK  406 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~i~  406 (444)
                             .+..+.++..+.    --.+..|+||++++++|+.|      |+|.+|++++++.+     ..+++ +...+.
T Consensus       218 -------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d------g~i~vw~~~tg~~v-----~~~~~~~~~~~~  279 (311)
T KOG1446|consen  218 -------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD------GTIHVWNLETGKKV-----AVLRGPNGGPVS  279 (311)
T ss_pred             -------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC------CcEEEEEcCCCcEe-----eEecCCCCCCcc
Confidence                   334455555444    12477899999999999988      99999999998876     45666 688899


Q ss_pred             ceeeeeCC
Q 013347          407 PVAFSFHD  414 (444)
Q Consensus       407 ~v~~spdg  414 (444)
                      ++.|+|.-
T Consensus       280 ~~~fnP~~  287 (311)
T KOG1446|consen  280 CVRFNPRY  287 (311)
T ss_pred             ccccCCce
Confidence            99999863

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=4.7e-30  Score=219.79  Aligned_cols=275  Identities=11%  Similarity=0.155  Sum_probs=216.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|..+.|-++...|++|+.|..|++|++....-.......+..++|+++.|.+++.++++++.|+.+++|+++..     
T Consensus       177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~-----  251 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL-----  251 (459)
T ss_pred             ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch-----
Confidence            599999999999999999999999999986321122222477789999999999999999999999999999822     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                                          .+..++.+|. ..|+++.|......+++++.|. +|++||+....+....-..+.+..++
T Consensus       252 --------------------r~~~TLsGHt-dkVt~ak~~~~~~~vVsgs~DR-tiK~WDl~k~~C~kt~l~~S~cnDI~  309 (459)
T KOG0288|consen  252 --------------------RLRHTLSGHT-DKVTAAKFKLSHSRVVSGSADR-TIKLWDLQKAYCSKTVLPGSQCNDIV  309 (459)
T ss_pred             --------------------hhhhhhcccc-cceeeehhhccccceeeccccc-hhhhhhhhhhheeccccccccccceE
Confidence                                3556788986 8999999988777799999998 99999999988776554456666777


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  340 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      .+  ...+++|..|++|++||.++..........+.|+++..+++|..++++ +.+..+..+++...             
T Consensus       310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~-------------  373 (459)
T KOG0288|consen  310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTK-------------  373 (459)
T ss_pred             ec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccc-------------
Confidence            65  567899999999999999998886555556699999999999998866 55566777776432             


Q ss_pred             ccccccccC-----CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC--CCcceeeeeC
Q 013347          341 PDIVSLTGS-----QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAFSFH  413 (444)
Q Consensus       341 ~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~i~~v~~spd  413 (444)
                      ....++...     ...+.+.|||++.|+++||.|      |.|+||++.++++.     ..+.....  .|++++|+|.
T Consensus       374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d------gsv~iW~v~tgKlE-----~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD------GSVYIWSVFTGKLE-----KVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             cEEEEeeccccccccccceeEECCCCceeeeccCC------CcEEEEEccCceEE-----EEeccCCCCcceEEEEEcCC
Confidence            222222211     157889999999999999999      99999999998876     33443333  5999999998


Q ss_pred             CCCCCCceEEEEeccceeeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~~  434 (444)
                      |.+     |..+..++.+.+|
T Consensus       443 G~~-----Llsadk~~~v~lW  458 (459)
T KOG0288|consen  443 GSG-----LLSADKQKAVTLW  458 (459)
T ss_pred             Cch-----hhcccCCcceEec
Confidence            877     5555567777665

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=6.2e-27  Score=220.50  Aligned_cols=276  Identities=14%  Similarity=0.149  Sum_probs=191.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCC---------CCcee--EEecCCCCCeEEEEEee-CCCeEEEEecCCcEE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------GKDAC--ILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~---------~~~~~--~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~  168 (444)
                      .|+....++|+..+++++.+.....|+....         ++...  ....+|.+.|++++|+| ++..|++++.|++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk  101 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM  101 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            3555566666555555555555555554321         22111  12358999999999999 767888888999999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      +||+...+.....                  ...+..+.+|. ..|.+++|+|++ ++|++++.|+ +|+|||+++++..
T Consensus       102 IWdi~~~~~~~~~------------------~~~l~~L~gH~-~~V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg~~~  161 (493)
T PTZ00421        102 GWGIPEEGLTQNI------------------SDPIVHLQGHT-KKVGIVSFHPSAMNVLASAGADM-VVNVWDVERGKAV  161 (493)
T ss_pred             EEecCCCcccccc------------------CcceEEecCCC-CcEEEEEeCcCCCCEEEEEeCCC-EEEEEECCCCeEE
Confidence            9999743221110                  01345678886 899999999975 6899999998 9999999988765


Q ss_pred             e-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc-eeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          248 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       248 ~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~-v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      . +..|...|.+++|+|++++|++++.|++|++||+++++. ..+..|.+. ...+.|.+++..+++++.....++.+.+
T Consensus       162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML  241 (493)
T ss_pred             EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence            5 455788999999999999999999999999999999876 445667654 4577899988887765533222334444


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEec-CCCccccceEEEEEcCCCCeEEEEEeeeeeCC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  401 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  401 (444)
                      |+...         ...++.....+.  .+....|++++++|++++. |      +.|++||+.+++.....    -..+
T Consensus       242 WDlr~---------~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD------g~Iriwdl~~~~~~~~~----~~~s  302 (493)
T PTZ00421        242 WDTRK---------MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE------GNIRCFELMNERLTFCS----SYSS  302 (493)
T ss_pred             EeCCC---------CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC------CeEEEEEeeCCceEEEe----eccC
Confidence            44211         011222222222  5666789999999998875 5      99999999988765221    1134


Q ss_pred             CCCCcceeeeeCCC
Q 013347          402 GDNPKPVAFSFHDK  415 (444)
Q Consensus       402 ~~~i~~v~~spdg~  415 (444)
                      ...+..++|.|.-.
T Consensus       303 ~~~~~g~~~~pk~~  316 (493)
T PTZ00421        303 VEPHKGLCMMPKWS  316 (493)
T ss_pred             CCCCcceEeccccc
Confidence            55678888888543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.4e-28  Score=215.82  Aligned_cols=256  Identities=15%  Similarity=0.205  Sum_probs=205.1

Q ss_pred             ccCcccccccccccccccccccCCCCccCcc-----ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC
Q 013347           68 EEGEGLFSTLHGIISHSIKPLLHPDHVHLLP-----EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS  142 (444)
Q Consensus        68 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~  142 (444)
                      ..+..+..++.|+    +..+.+.. ..++.     ..+|+++.|-+..+++++|+.|..|+||+.++ ......+ ..|
T Consensus        24 tePw~la~LynG~----V~IWnyet-qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-~ekV~~F-eAH   96 (794)
T KOG0276|consen   24 TEPWILAALYNGD----VQIWNYET-QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-GEKVKTF-EAH   96 (794)
T ss_pred             CCceEEEeeecCe----eEEEeccc-ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-ceeeEEe-ecc
Confidence            3445566666665    33333322 22222     34799999999999999999999999999998 5555555 699


Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-  221 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-  221 (444)
                      .+-|.+++.+|...++++++.|-+|++||.+                        +.|.+.+++.+|. ..|.+++|+| 
T Consensus        97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we------------------------~~wa~~qtfeGH~-HyVMqv~fnPk  151 (794)
T KOG0276|consen   97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE------------------------NEWACEQTFEGHE-HYVMQVAFNPK  151 (794)
T ss_pred             ccceeeeeecCCCCeEEecCCccEEEEeecc------------------------CceeeeeEEcCcc-eEEEEEEecCC
Confidence            9999999999998999999999999999997                        4688999999996 8999999999 


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce-eccccCCCce
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFV  297 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v  297 (444)
                      |.+.+++++-|+ +|++|.+.+.... .+.+|...|.++++-+-  ..+|++|++|.+++|||.++..+ +++.+|...|
T Consensus       152 D~ntFaS~sLDr-TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv  230 (794)
T KOG0276|consen  152 DPNTFASASLDR-TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV  230 (794)
T ss_pred             Cccceeeeeccc-cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc
Confidence            778999999998 9999999887655 47789999999999874  46999999999999999999988 6788999999


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                      ..+.|+|.-..++++ ++++++++|+-.             +.+...++.-.- .+++++-.+.++.+++|...
T Consensus       231 s~v~fhp~lpiiisg-sEDGTvriWhs~-------------Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  231 SFVFFHPELPIIISG-SEDGTVRIWNSK-------------TYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             eEEEecCCCcEEEEe-cCCccEEEecCc-------------ceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence            999999999988865 555666666532             223333443333 78888888877777777765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.4e-27  Score=198.21  Aligned_cols=298  Identities=16%  Similarity=0.208  Sum_probs=204.2

Q ss_pred             cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEE
Q 013347           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKV  148 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~  148 (444)
                      ......|+||.++                  |++++|+.||++||+++.|+.|+||++.+-...  ..+...-.-+..+.
T Consensus        76 pl~~~~LKgH~~~------------------vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~  137 (420)
T KOG2096|consen   76 PLNVSVLKGHKKE------------------VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTR  137 (420)
T ss_pred             chhhhhhhccCCc------------------eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceE
Confidence            3455788888777                  999999999999999999999999999863111  11111112235678


Q ss_pred             EEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347          149 LEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA  227 (444)
Q Consensus       149 l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  227 (444)
                      +.|+||.+.++..... .++++|.+.....      ++ .+...      -.|.-...-+.| ...+..+-...++++|+
T Consensus       138 V~FapDc~s~vv~~~~g~~l~vyk~~K~~d------G~-~~~~~------v~~D~~~f~~kh-~v~~i~iGiA~~~k~im  203 (420)
T KOG2096|consen  138 VVFAPDCKSVVVSVKRGNKLCVYKLVKKTD------GS-GSHHF------VHIDNLEFERKH-QVDIINIGIAGNAKYIM  203 (420)
T ss_pred             EEECCCcceEEEEEccCCEEEEEEeeeccc------CC-CCccc------ccccccccchhc-ccceEEEeecCCceEEE
Confidence            9999998887776654 7899998763221      00 00000      011111122233 35677788888999999


Q ss_pred             EEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC---CCce------eccccCCCcee
Q 013347          228 SASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN---TWTS------EPWSSTSGFVT  298 (444)
Q Consensus       228 ~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~---~~~~------~~~~~~~~~v~  298 (444)
                      +++.|. .|.+|+++......+......-...+.||+|+++++++..-.|++|.+-   .|+.      ..+.+|.+.|.
T Consensus       204 sas~dt-~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~  282 (420)
T KOG2096|consen  204 SASLDT-KICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL  282 (420)
T ss_pred             EecCCC-cEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence            999997 9999999944333454555667788999999999999988899999873   3322      34669999999


Q ss_pred             EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc-cccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      .++|+|+.+.+++.    .+++.|++|+..-.+.....+.....- ..+.... .-..++.+|.|+.||.+..       
T Consensus       283 ~~aFsn~S~r~vtv----SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-------  351 (420)
T KOG2096|consen  283 AAAFSNSSTRAVTV----SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-------  351 (420)
T ss_pred             eeeeCCCcceeEEE----ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-------
Confidence            99999999999876    344667777653322221111111110 1111112 3348999999999988764       


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ..+++|..++++...    ..-+.|+..|.+++|++||+|
T Consensus       352 s~l~~~~se~g~~~~----~~e~~h~~~Is~is~~~~g~~  387 (420)
T KOG2096|consen  352 SDLKVFASEDGKDYP----ELEDIHSTTISSISYSSDGKY  387 (420)
T ss_pred             CceEEEEcccCccch----hHHHhhcCceeeEEecCCCcE
Confidence            589999999877651    223468999999999999998

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=197.56  Aligned_cols=284  Identities=12%  Similarity=0.130  Sum_probs=211.1

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .|.+++||| ...+++.+|.||+||+|+++..+.........|.++|.+++|+.||..+++++.|+.+++||+.+.+   
T Consensus        29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---  105 (347)
T KOG0647|consen   29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---  105 (347)
T ss_pred             chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---
Confidence            589999999 4556668899999999999986555545556899999999999999999999999999999998442   


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC--eEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                                             ...+..| .++|..+.|-+...  .|++|+.|. +|+.||.+...........+.+.
T Consensus       106 -----------------------~~~v~~H-d~pvkt~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~~pv~t~~LPeRvY  160 (347)
T KOG0647|consen  106 -----------------------VSQVAAH-DAPVKTCHWVPGMNYQCLVTGSWDK-TLKFWDTRSSNPVATLQLPERVY  160 (347)
T ss_pred             -----------------------eeeeeec-ccceeEEEEecCCCcceeEeccccc-ceeecccCCCCeeeeeeccceee
Confidence                                   2234455 48999999987655  899999998 99999999888777777788888


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCcee--c-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ++..-  ...++++..++.|.+|+++++..+  . .....-.++|++..++....+.|+-+ +++.+-.+....+.    
T Consensus       161 a~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE-Grv~iq~id~~~~~----  233 (347)
T KOG0647|consen  161 AADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE-GRVAIQYIDDPNPK----  233 (347)
T ss_pred             ehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec-ceEEEEecCCCCcc----
Confidence            87653  456788888999999999876542  1 22455678999998888777766433 55555444332110    


Q ss_pred             cCCCCcccccc---cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          335 LLPVDLPDIVS---LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       335 ~~~~~~~~~~~---~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                       .....++-+.   ..+.- .|.+++|+|....|++++.|      |++.+||-+.+..+     ...+.|..+|++.+|
T Consensus       234 -~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD------Gtf~FWDkdar~kL-----k~s~~~~qpItcc~f  301 (347)
T KOG0647|consen  234 -DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD------GTFSFWDKDARTKL-----KTSETHPQPITCCSF  301 (347)
T ss_pred             -CceeEEEeccCCCCCCceEEecceEeecccceEEEecCC------ceEEEecchhhhhh-----hccCcCCCccceeEe
Confidence             0001111111   11111 68899999999999999999      99999998875544     456678999999999


Q ss_pred             eeCCCCCCCceEEEEeccceee
Q 013347          411 SFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       411 spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      +.+|.+.+.+ +.--|+.|...
T Consensus       302 n~~G~ifaYA-~gYDWSkGhe~  322 (347)
T KOG0647|consen  302 NRNGSIFAYA-LGYDWSKGHEG  322 (347)
T ss_pred             cCCCCEEEEE-eeccccccccc
Confidence            9999974433 34457777665

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.5e-28  Score=208.84  Aligned_cols=297  Identities=12%  Similarity=0.095  Sum_probs=226.3

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ..+|+++.|+|....|.+++.|++++||.++..........+-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            3479999999999999999999999999998543332222233467899999999988 566666678999999984332


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                      .                       .+..+.++....+.....+|++++|+..+..| .|.+....+++.+......+.|.
T Consensus       293 ~-----------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~eli~s~KieG~v~  348 (514)
T KOG2055|consen  293 T-----------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTKELITSFKIEGVVS  348 (514)
T ss_pred             c-----------------------cccCCCCcccchhheeEecCCCCeEEEcccCc-eEEeehhhhhhhhheeeeccEEe
Confidence            2                       22234444456788899999999999999998 99999999998888777789999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .++|+.|++.|++.+.+|.|.+||++...+.......+.|  ++++.++++.++|+|+ +.+.+.+++..+.   +    
T Consensus       349 ~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~---~----  420 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSC---F----  420 (514)
T ss_pred             eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceEEEeccchh---h----
Confidence            9999999999999999999999999998774433333333  6778889999999774 3344444443221   1    


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                      .....+++.++..-. .|+++.|+||+++||.+|....    +.+++-.+.+....+.-|.  ....-+.|+|++|||.|
T Consensus       421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k----nalrLVHvPS~TVFsNfP~--~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK----NALRLVHVPSCTVFSNFPT--SNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc----cceEEEeccceeeeccCCC--CCCcccceEEEEecCCC
Confidence            112445666666655 8999999999999999987643    7899999987555432222  12334568999999987


Q ss_pred             CCCCCceEEEEeccceeeeeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      -|     |++|...|++.+|.|.|
T Consensus       495 G~-----lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  495 GY-----LAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             ce-----EEeecCCCceeeEeecc
Confidence            66     99999999999999975

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6.9e-29  Score=209.34  Aligned_cols=275  Identities=12%  Similarity=0.124  Sum_probs=213.7

Q ss_pred             ceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      +|.|++=+|.. ..+|+|+.||.|+|||+.. ..+...+ ..|.+.|..+++..  ..++++|.|.+|+.|.++.+ .  
T Consensus        68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p--  140 (433)
T KOG0268|consen   68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-P--  140 (433)
T ss_pred             ccchhhcCcchhhhhhccccCceEEEEehhh-hhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeeccCC-c--
Confidence            39999999987 7899999999999999997 4444444 59999999999987  68999999999999999842 1  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                             .+++.+  ...+..+.-+..+..+++++.   .|.|||.+....+. +.-....|.+
T Consensus       141 -----------------------~~tilg--~s~~~gIdh~~~~~~FaTcGe---~i~IWD~~R~~Pv~smswG~Dti~s  192 (433)
T KOG0268|consen  141 -----------------------LHTILG--KSVYLGIDHHRKNSVFATCGE---QIDIWDEQRDNPVSSMSWGADSISS  192 (433)
T ss_pred             -----------------------ceeeec--cccccccccccccccccccCc---eeeecccccCCccceeecCCCceeE
Confidence                                   122222  246677777777778888774   69999997665554 4455678999


Q ss_pred             EEEecCCC-eEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +.|+|... .|++++.|+.|.+||++++++.........-+.++|+| ..+.++++++|..++.+++...          
T Consensus       193 vkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l----------  261 (433)
T KOG0268|consen  193 VKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL----------  261 (433)
T ss_pred             EecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhh----------
Confidence            99999654 55777799999999999998854444455678999999 4555567788888888887653          


Q ss_pred             CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                        ..++....+|. .|.+++|||.|+-+++||.|      .+|+||....+.-....    ...--..|.+|.||-|.+|
T Consensus       262 --~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD------ksIRIf~~~~~~SRdiY----htkRMq~V~~Vk~S~Dsky  329 (433)
T KOG0268|consen  262 --SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD------KSIRIFPVNHGHSRDIY----HTKRMQHVFCVKYSMDSKY  329 (433)
T ss_pred             --cccchhhcccceeEEEeccCCCcchhcccccc------ceEEEeecCCCcchhhh----hHhhhheeeEEEEeccccE
Confidence              35567778888 99999999999999999988      99999999865432110    1112356889999999998


Q ss_pred             CCCceEEEEeccceeeeeeeee
Q 013347          417 KQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       417 ~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                           +..|.++|+|.+|.-..
T Consensus       330 -----i~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  330 -----IISGSDDGNVRLWKAKA  346 (433)
T ss_pred             -----EEecCCCcceeeeecch
Confidence                 77899999999997643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.9e-27  Score=215.94  Aligned_cols=283  Identities=17%  Similarity=0.242  Sum_probs=223.0

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .+...=+.|+ ..+.+|+| ....|++|+..+ +...... ..+.+.|+++.|+++|..|+++..+|.|.|||....+. 
T Consensus       177 DfY~nlldWs-s~n~laVa-lg~~vylW~~~s-~~v~~l~-~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-  251 (484)
T KOG0305|consen  177 DFYLNLLDWS-SANVLAVA-LGQSVYLWSASS-GSVTELC-SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-  251 (484)
T ss_pred             cHhhhHhhcc-cCCeEEEE-ecceEEEEecCC-CceEEeE-ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-
Confidence            3345567888 44566665 456799999987 4433333 34489999999999999999999999999999984433 


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCe
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGL  256 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v  256 (444)
                                              .+.+.+++...|.+++|+  +..+.+|+.++ .|..+|++..+...  +..|...|
T Consensus       252 ------------------------~~~~~~~h~~rvg~laW~--~~~lssGsr~~-~I~~~dvR~~~~~~~~~~~H~qeV  304 (484)
T KOG0305|consen  252 ------------------------TRTLRGSHASRVGSLAWN--SSVLSSGSRDG-KILNHDVRISQHVVSTLQGHRQEV  304 (484)
T ss_pred             ------------------------cccccCCcCceeEEEecc--CceEEEecCCC-cEEEEEEecchhhhhhhhccccee
Confidence                                    334555335899999997  67888999998 99999999875432  66788999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ..++|++|++++++|+.|+.+.|||...... ..+..|...|..++|+|-..-|++.+ ++..++.|++|+..       
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~-------  376 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTN-------  376 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcC-------
Confidence            9999999999999999999999999966555 67889999999999999765544332 23567888888753       


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                         .+..+..+.....|.++.|++..+-|+++.....    +.|.||+..+.+.     +..+.+|..+|..+++||||.
T Consensus       377 ---~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~----n~i~lw~~ps~~~-----~~~l~gH~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  377 ---TGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE----NQITLWKYPSMKL-----VAELLGHTSRVLYLALSPDGE  444 (484)
T ss_pred             ---CCcEecccccCCceeeEEEcCCCCEEEEecCCCC----CcEEEEeccccce-----eeeecCCcceeEEEEECCCCC
Confidence               4455555555558999999999987777654432    7899999987444     467889999999999999988


Q ss_pred             CCCCceEEEEeccceeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +     ++++-.|.++.||.++-
T Consensus       445 ~-----i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  445 T-----IVTGAADETLRFWNLFD  462 (484)
T ss_pred             E-----EEEecccCcEEeccccC
Confidence            6     78888999999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.8e-28  Score=193.15  Aligned_cols=282  Identities=13%  Similarity=0.257  Sum_probs=216.0

Q ss_pred             eEEEEEec-CCCeEEEEE-------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEec
Q 013347          102 LQGVSWHQ-HKHIVAFIS-------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP  172 (444)
Q Consensus       102 v~~~~~sp-~g~~la~~~-------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~  172 (444)
                      =.++.||| -.++||++.       ..|.+.|.++...+.........-.+.+..++|+++.. .+++++.||+++|||+
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            45788999 234444432       67899999997433333333335678999999998754 5677788999999996


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCcee-ee
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IR  250 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~  250 (444)
                      ..+..                        .+..++.|. ..|.++.|++ +++.+++++.|+ +|++|+...++.+. ..
T Consensus        91 ~~~s~------------------------Pi~~~kEH~-~EV~Svdwn~~~r~~~ltsSWD~-TiKLW~~~r~~Sv~Tf~  144 (311)
T KOG0277|consen   91 TMPSK------------------------PIHKFKEHK-REVYSVDWNTVRRRIFLTSSWDG-TIKLWDPNRPNSVQTFN  144 (311)
T ss_pred             CCCCc------------------------chhHHHhhh-hheEEeccccccceeEEeeccCC-ceEeecCCCCcceEeec
Confidence            53222                        234567775 8999999998 666788889998 99999988776554 66


Q ss_pred             cCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCC-ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          251 RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       251 ~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      +|...|...+|+| ..+.+++++.|+++++||++.. +...++.|...+.++.|+.-...++++++.+..++.|++.+. 
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-  223 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-  223 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-
Confidence            7889999999999 5778899999999999999864 446688999999999999988888877788888888887653 


Q ss_pred             CCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  406 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~  406 (444)
                                 ..++..+.+|. .|..+.|||.. ..||+++.|      -+++|||...+.-.    +.++.-|++-+.
T Consensus       224 -----------r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD------mT~riw~~~~~ds~----~e~~~~HtEFv~  282 (311)
T KOG0277|consen  224 -----------RTPLFELNGHGLAVRKVKFSPHHASLLASASYD------MTVRIWDPERQDSA----IETVDHHTEFVC  282 (311)
T ss_pred             -----------cccceeecCCceEEEEEecCcchhhHhhhcccc------ceEEecccccchhh----hhhhhccceEEe
Confidence                       24577788999 99999999975 678898887      99999999854332    456677899999


Q ss_pred             ceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       407 ~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      .+.||+-   ..+-+..+|| |+.+++|.
T Consensus       283 g~Dws~~---~~~~vAs~gW-De~l~Vw~  307 (311)
T KOG0277|consen  283 GLDWSLF---DPGQVASTGW-DELLYVWN  307 (311)
T ss_pred             ccccccc---cCceeeeccc-ccceeeec
Confidence            9999985   2233344455 47777764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.4e-28  Score=195.11  Aligned_cols=239  Identities=17%  Similarity=0.262  Sum_probs=191.1

Q ss_pred             cceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .++..++|++.. +.+++++.||+++|||+..+..+...+ ++|...|.++.|++..+ .+++++.|++|++|+...++ 
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~-kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-  138 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKF-KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-  138 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHH-HhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-
Confidence            368999999964 677788999999999977654444444 69999999999998644 46666779999999988443 


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGG  255 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~  255 (444)
                                              -+.++.+|. ..|...+|+| .++.+++++.|+ ++++||++.. +...+..|...
T Consensus       139 ------------------------Sv~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd~-~l~lwdvr~~gk~~~i~ah~~E  192 (311)
T KOG0277|consen  139 ------------------------SVQTFNGHN-SCIYQAAFSPHIPNLFASASGDG-TLRLWDVRSPGKFMSIEAHNSE  192 (311)
T ss_pred             ------------------------ceEeecCCc-cEEEEEecCCCCCCeEEEccCCc-eEEEEEecCCCceeEEEeccce
Confidence                                    345678885 8999999999 788999999998 9999999864 44557788889


Q ss_pred             eEEEEEec-CCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          256 LSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       256 v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      +.++.|+. +.+.+++|+.|+.|+.||++.-+.  ..+.+|.-.|+.+.|||...-++++++-+-+.++|+...      
T Consensus       193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~------  266 (311)
T KOG0277|consen  193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER------  266 (311)
T ss_pred             eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc------
Confidence            99999998 566779999999999999997665  446799999999999998877666665555555544321      


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEc
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                            ....+.+...|. -+..+.||+ ++.++|+++.|      +.++||+.
T Consensus       267 ------~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD------e~l~Vw~p  308 (311)
T KOG0277|consen  267 ------QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWD------ELLYVWNP  308 (311)
T ss_pred             ------chhhhhhhhccceEEeccccccccCceeeecccc------cceeeecc
Confidence                  344566777888 788999997 56789999988      99999985

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.1e-28  Score=225.43  Aligned_cols=271  Identities=17%  Similarity=0.292  Sum_probs=194.9

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc----------cc-----------c---c---c
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF----------LG-----------A---L---S  193 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----------~~-----------~---~---~  193 (444)
                      .|.+.|+++.||+||++|+++|.|+.|+||.+..... ..+..+....          ..           .   .   .
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            7999999999999999999999999999999874111 0000000000          00           0   0   0


Q ss_pred             cCCC-----C----ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec-
Q 013347          194 RGPG-----T----RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-  263 (444)
Q Consensus       194 ~~~~-----~----~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-  263 (444)
                      ..+.     .    .-..++.+.||. +.|.++.||.+ ++|++++.|. +|++|++...+++..+.|...|+|++|+| 
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt-~DILDlSWSKn-~fLLSSSMDK-TVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHT-ADILDLSWSKN-NFLLSSSMDK-TVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             CCccccCCCccccccccchhhhhccc-hhheecccccC-CeeEeccccc-cEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence            0000     0    011345788996 89999999976 5788999998 99999999999999999999999999999 


Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc
Q 013347          264 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  343 (444)
Q Consensus       264 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      |.+||++|+-|++||||++...+...+.....-|++++|.|+|+..++|+-. +..+.+...+.....+.++.   ...-
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~-G~C~fY~t~~lk~~~~~~I~---~~~~  496 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN-GYCRFYDTEGLKLVSDFHIR---LHNK  496 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEec-cEEEEEEccCCeEEEeeeEe---eccC
Confidence            7899999999999999999998887777667889999999999998887543 44444443322211111111   1111


Q ss_pred             cccccCCceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC--CCcceeeeeCCCCCCCc
Q 013347          344 VSLTGSQGIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD--NPKPVAFSFHDKFKQGP  420 (444)
Q Consensus       344 ~~~~~~~~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~i~~v~~spdg~~~~~~  420 (444)
                      +...++ .|+.+.|.|.. ..+++.+.|      ..|||||.+...++     ..++|+..  .-....|+.||++    
T Consensus       497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnD------SrIRI~d~~~~~lv-----~KfKG~~n~~SQ~~Asfs~Dgk~----  560 (712)
T KOG0283|consen  497 KKKQGK-RITGLQFFPGDPDEVLVTSND------SRIRIYDGRDKDLV-----HKFKGFRNTSSQISASFSSDGKH----  560 (712)
T ss_pred             ccccCc-eeeeeEecCCCCCeEEEecCC------CceEEEeccchhhh-----hhhcccccCCcceeeeEccCCCE----
Confidence            222233 79999999754 346666777      89999999876554     55666432  2346689999998    


Q ss_pred             eEEEEeccceeeeeee
Q 013347          421 LLSVCWSSGFCCTYPL  436 (444)
Q Consensus       421 ~l~~~~~~g~i~~~~~  436 (444)
                       +.++.+|..|++|.+
T Consensus       561 -IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  561 -IVSASEDSWVYIWKN  575 (712)
T ss_pred             -EEEeecCceEEEEeC
Confidence             566669999999987

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-27  Score=216.70  Aligned_cols=240  Identities=19%  Similarity=0.282  Sum_probs=196.8

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|+++.|+++|.+||+|..+|.|.|||... .+....+...|...|-+++|+.  ..+.+++.++.|..+|+.......
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchhhh
Confidence            4699999999999999999999999999987 4444454334999999999993  467777779999999998443321


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~v~~  258 (444)
                      .                        .+.+|. ..|..++|++|++++|+|+.|+ .+.|||....+ ...+..|...|.+
T Consensus       295 ~------------------------~~~~H~-qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  295 S------------------------TLQGHR-QEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             h------------------------hhhccc-ceeeeeEECCCCCeeccCCCcc-ceEeccCCCccccEEEeccceeeeE
Confidence            1                        256665 8999999999999999999998 99999995544 4457889999999


Q ss_pred             EEEec-CCCeEEEEe--cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          259 LKWSP-TGDYFFAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       259 ~~~sp-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ++|+| ....||+|+  .|+.|++||..+++........+.|.++.|++..+.|+++.+...  ..+.+|..+       
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~--n~i~lw~~p-------  419 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSE--NQITLWKYP-------  419 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCC--CcEEEEecc-------
Confidence            99999 466778764  599999999999999887788899999999999988776543221  244444432       


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                         +...+..+.+|. .|..++++|||..+++++.|      .++++|++-.
T Consensus       420 ---s~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D------ETlrfw~~f~  462 (484)
T KOG0305|consen  420 ---SMKLVAELLGHTSRVLYLALSPDGETIVTGAAD------ETLRFWNLFD  462 (484)
T ss_pred             ---ccceeeeecCCcceeEEEEECCCCCEEEEeccc------CcEEeccccC
Confidence               356677889999 99999999999999999999      8999999865

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=3.4e-26  Score=216.39  Aligned_cols=260  Identities=11%  Similarity=0.115  Sum_probs=183.5

Q ss_pred             EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccC
Q 013347          117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG  195 (444)
Q Consensus       117 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  195 (444)
                      |+.++.+++|+... ..... ...+|.+.|.+++|+|+ +..|++++.|++|+||++...........            
T Consensus        50 GG~~gvI~L~~~~r-~~~v~-~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------  115 (568)
T PTZ00420         50 GGLIGAIRLENQMR-KPPVI-KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------  115 (568)
T ss_pred             CCceeEEEeeecCC-CceEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc------------
Confidence            45678899999875 33333 33699999999999997 56778888899999999974322100000            


Q ss_pred             CCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC
Q 013347          196 PGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  274 (444)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  274 (444)
                           .....+.+|. ..|.+++|+|++..+ ++++.|+ +|++||+++++......+...|.+++|+|+|++|++++.|
T Consensus       116 -----~p~~~L~gH~-~~V~sVaf~P~g~~iLaSgS~Dg-tIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D  188 (568)
T PTZ00420        116 -----DPQCILKGHK-KKISIIDWNPMNYYIMCSSGFDS-FVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVG  188 (568)
T ss_pred             -----cceEEeecCC-CcEEEEEECCCCCeEEEEEeCCC-eEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecC
Confidence                 1233567775 899999999998765 6888898 9999999998766555567889999999999999999999


Q ss_pred             CcEEEEECCCCce-eccccCCCceeE-----EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347          275 GTFYLWETNTWTS-EPWSSTSGFVTG-----ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  348 (444)
Q Consensus       275 ~~v~iwd~~~~~~-~~~~~~~~~v~~-----~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (444)
                      +.|+|||+++++. ..+.+|.+.+.+     ..|++++.+|++++.++...+.+.+|+...         ...++..+..
T Consensus       189 ~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~---------~~~pl~~~~l  259 (568)
T PTZ00420        189 KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN---------TTSALVTMSI  259 (568)
T ss_pred             CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC---------CCCceEEEEe
Confidence            9999999999877 456678765432     345689898887765543334455554321         1223333332


Q ss_pred             CC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          349 SQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       349 ~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      +.   .+......++|.++++|+.|      ++|++|++..+.+..   +..+. +..+..+++|.|+-..
T Consensus       260 d~~~~~L~p~~D~~tg~l~lsGkGD------~tIr~~e~~~~~~~~---l~~~~-s~~p~~g~~f~Pkr~~  320 (568)
T PTZ00420        260 DNASAPLIPHYDESTGLIYLIGKGD------GNCRYYQHSLGSIRK---VNEYK-SCSPFRSFGFLPKQIC  320 (568)
T ss_pred             cCCccceEEeeeCCCCCEEEEEECC------CeEEEEEccCCcEEe---ecccc-cCCCccceEEcccccc
Confidence            22   22233335568889899888      999999998765432   22223 5677889999997553

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.2e-27  Score=201.46  Aligned_cols=262  Identities=15%  Similarity=0.272  Sum_probs=203.6

Q ss_pred             ceEEEEEecCC---CeEEEEECCCeEEEEEccCCCCceeEE--ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDSGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g---~~la~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      +|.+++|.-..   ..+++++.|.++++|.++.+.......  ..+|...|-+++..++|.++++++.|.+|.||+....
T Consensus       146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~  225 (423)
T KOG0313|consen  146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD  225 (423)
T ss_pred             ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence            57877776433   359999999999999998752222221  2499999999999999999999999999999994311


Q ss_pred             CCcceeeccccccc-cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC
Q 013347          176 GNAASVRSGAASFL-GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG  254 (444)
Q Consensus       176 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~  254 (444)
                       ....+.......- ........+.-..+-.+.+|. ..|.++.|++ ...+++++.|. +|+.||+.++........+.
T Consensus       226 -~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDH-TIk~WDletg~~~~~~~~~k  301 (423)
T KOG0313|consen  226 -EEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVWSD-ATVIYSVSWDH-TIKVWDLETGGLKSTLTTNK  301 (423)
T ss_pred             -ccccccccchhhhhhhhhhhcccccCceEEecccc-cceeeEEEcC-CCceEeecccc-eEEEEEeecccceeeeecCc
Confidence             1111111000000 000000111123456788996 8999999987 67899999998 99999999999888777889


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      .+.++..+|..++|++|+.|..+++||.+++.-    +.+.+|.+.|.++.|+|...+++++++.|+++..|+++.    
T Consensus       302 sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS----  377 (423)
T KOG0313|consen  302 SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS----  377 (423)
T ss_pred             ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc----
Confidence            999999999999999999999999999998753    567799999999999999999998888888888888765    


Q ss_pred             cCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                              ...++..+.+|. .|.++.|+ ++.+|++|+.|      ++|+++.-.
T Consensus       378 --------~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD------~~l~i~~~~  418 (423)
T KOG0313|consen  378 --------TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD------NKLRIFKGS  418 (423)
T ss_pred             --------CCCcceeeccCCceEEEEecc-CCceEEeccCc------ceEEEeccc
Confidence                    344677888888 99999997 66789999999      899998754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=2.5e-27  Score=195.25  Aligned_cols=249  Identities=14%  Similarity=0.176  Sum_probs=192.4

Q ss_pred             EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      ...+|.+.|+.+.|+|+|..++++|.|..|.+|++....+.                        .-.+++|. +.|..+
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN------------------------~~~lkgHs-gAVM~l   96 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN------------------------FWVLKGHS-GAVMEL   96 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc------------------------eeeecccc-ceeEee
Confidence            33699999999999999999999999999999997622111                        12356786 899999


Q ss_pred             EEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCceeccccCCC
Q 013347          218 SWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSG  295 (444)
Q Consensus       218 ~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~  295 (444)
                      .|.+|++.+++++.|. +++.||++++++.. ...|..-|.++.-+.-|.. +.+++.|+++++||+++....+......
T Consensus        97 ~~~~d~s~i~S~gtDk-~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky  175 (338)
T KOG0265|consen   97 HGMRDGSHILSCGTDK-TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY  175 (338)
T ss_pred             eeccCCCEEEEecCCc-eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce
Confidence            9999999999999998 99999999998876 5567777888875444554 4788999999999999988877777788


Q ss_pred             ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcc
Q 013347          296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDI  374 (444)
Q Consensus       296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~  374 (444)
                      +++++.|..++..+.+++- ++.+.+|++.             ......++.||. +|+.+..+|+|.++.+-+.|    
T Consensus       176 qltAv~f~d~s~qv~sggI-dn~ikvWd~r-------------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd----  237 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGI-DNDIKVWDLR-------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD----  237 (338)
T ss_pred             eEEEEEecccccceeeccc-cCceeeeccc-------------cCcceEEeecccCceeeEEeccCCCcccccccc----
Confidence            9999999999999887632 2334444432             345677889999 99999999999999999988    


Q ss_pred             ccceEEEEEcCCCCeEEEEEeeeeeCC----CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          375 YKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                        +++++||++--... ...+..+.+|    +.....++|||++++     +.+|..|-.+++|+..+
T Consensus       238 --~tvrvwd~rp~~p~-~R~v~if~g~~hnfeknlL~cswsp~~~~-----i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  238 --NTVRVWDVRPFAPS-QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-----ITAGSADRFVYVWDTTS  297 (338)
T ss_pred             --ceEEEEEecccCCC-CceEEEeecchhhhhhhcceeeccCCCCc-----cccccccceEEEeeccc
Confidence              99999998742211 1123445554    334567799999998     44555666666665544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7.5e-28  Score=206.32  Aligned_cols=239  Identities=12%  Similarity=0.182  Sum_probs=197.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|.-+.||||.++|++++.+..+.+||+.+ +.....+.+++...+.+++|.|||..+++++.|+++..||++...    
T Consensus       271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----  345 (519)
T KOG0293|consen  271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----  345 (519)
T ss_pred             ceEEEEECCCCCeEEecCchHheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----
Confidence            699999999999999999999999999999 666666666778999999999999999999999999999998221    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                                            ....++-....|.+++.++||+++++...|. .|++|+.++.....+.....+|++++
T Consensus       346 ----------------------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~-~i~l~~~e~~~dr~lise~~~its~~  402 (519)
T KOG0293|consen  346 ----------------------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDK-KIRLYNREARVDRGLISEEQPITSFS  402 (519)
T ss_pred             ----------------------hhcccccccceeEEEEEcCCCcEEEEEeccc-ceeeechhhhhhhccccccCceeEEE
Confidence                                  1112222235799999999999999999998 99999999887776777788999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc--eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF--VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~--v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      .|.|++++++.-.+..+++||++..+. .++.+|...  +-.-+|.--...++++++++..+++|+..            
T Consensus       403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~------------  470 (519)
T KOG0293|consen  403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI------------  470 (519)
T ss_pred             EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc------------
Confidence            999999999999999999999996665 556676554  44445655443455567888999999864            


Q ss_pred             CCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCC
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                       .+.++..+.||. .|++++|+|.. .++|+++.|      |+|+||....
T Consensus       471 -sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD------gtIRIWg~~~  514 (519)
T KOG0293|consen  471 -SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD------GTIRIWGPSD  514 (519)
T ss_pred             -CCceeEeecCCcceeeEEecCCCCHHHhhccCCC------CeEEEecCCc
Confidence             567889999999 99999999976 567777777      9999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4.2e-27  Score=215.92  Aligned_cols=275  Identities=13%  Similarity=0.113  Sum_probs=225.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|+++++|.+...+++| ..+.++||+..+ .+..+.+.   .+-+.+..|-|.+++++.+...|.+.+||+...     
T Consensus       375 dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t-~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-----  444 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASG-AGESIKIWNRDT-LKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA-----  444 (888)
T ss_pred             heeEEEeecCceeeeec-CCCcEEEEEccC-cceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh-----
Confidence            79999999999888876 467899999998 56666654   337889999999888888888999999999832     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-----Cc--------e
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LG--------T  247 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~--------~  247 (444)
                                          .++.+.+.|. +.+.+++.+||++.+++++.|. +|++||+.--     ..        .
T Consensus       445 --------------------~l~Eti~AHd-gaIWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  445 --------------------SLVETIRAHD-GAIWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHT  502 (888)
T ss_pred             --------------------hhhhhhhccc-cceeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccc
Confidence                                2344566674 8999999999999999999998 9999997521     11        1


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      ........|.|+++||||++|+++=-|++|++|-+++-+. ..+.+|.-+|.|+..+||++++++++.+    ..+.+|.
T Consensus       503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSAD----KnVKiWG  578 (888)
T KOG0306|consen  503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD----KNVKIWG  578 (888)
T ss_pred             eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCC----CceEEec
Confidence            2334467899999999999999999999999999999887 6688999999999999999999977443    4444443


Q ss_pred             CCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  405 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i  405 (444)
                      ..          -+.+-+++-+|+ .|.++.|-|+...+.+++.|      +.|+-||-+.-     ..+..+.+|...|
T Consensus       579 Ld----------FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD------~kvKqWDg~kF-----e~iq~L~~H~~ev  637 (888)
T KOG0306|consen  579 LD----------FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD------GKVKQWDGEKF-----EEIQKLDGHHSEV  637 (888)
T ss_pred             cc----------cchhhhhhhcccCceeEEEEcccceeEEEecCc------ceEEeechhhh-----hhheeeccchhee
Confidence            21          245667888888 99999999999999999998      99999998853     3457899999999


Q ss_pred             cceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          406 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       406 ~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ++++.+|+|.|     +.-+..|-.|..|...
T Consensus       638 ~cLav~~~G~~-----vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  638 WCLAVSPNGSF-----VVSSSHDKSIRLWERT  664 (888)
T ss_pred             eeeEEcCCCCe-----EEeccCCceeEeeecc
Confidence            99999999987     5556677888888754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=2.2e-28  Score=213.76  Aligned_cols=248  Identities=17%  Similarity=0.236  Sum_probs=198.5

Q ss_pred             ecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          139 TSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       139 ~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      ..+|...|+++.|.| .+..|++++.|+.|+||++-..                        ..+++++.+|. .+|.++
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------------~~~lrtf~gH~-k~Vrd~  264 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------------RRCLRTFKGHR-KPVRDA  264 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC------------------------cceehhhhcch-hhhhhh
Confidence            369999999999999 5555666777999999999731                        14788899996 899999


Q ss_pred             EEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCce-eccccCCC
Q 013347          218 SWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTSG  295 (444)
Q Consensus       218 ~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~  295 (444)
                      +|+++|..+++++.|+ .|++||+++|++.........+.++.|+|++ +.|++|+.|+.|+.||+++++. +....|-+
T Consensus       265 ~~s~~g~~fLS~sfD~-~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  265 SFNNCGTSFLSASFDR-FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             hccccCCeeeeeecce-eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence            9999999999999998 9999999999999888888899999999998 7789999999999999999998 55668889


Q ss_pred             ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347          296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      .|..+.|-++|+.++++. ++..+.+|.....          +....+.....| ...++..+|++++++.-+.|     
T Consensus       344 ~i~~i~F~~~g~rFissS-Ddks~riWe~~~~----------v~ik~i~~~~~h-smP~~~~~P~~~~~~aQs~d-----  406 (503)
T KOG0282|consen  344 AILDITFVDEGRRFISSS-DDKSVRIWENRIP----------VPIKNIADPEMH-TMPCLTLHPNGKWFAAQSMD-----  406 (503)
T ss_pred             heeeeEEccCCceEeeec-cCccEEEEEcCCC----------ccchhhcchhhc-cCcceecCCCCCeehhhccC-----
Confidence            999999999999999764 4455566654211          111111111222 56788999999999999988     


Q ss_pred             cceEEEEEcCCCCeEEEEEeeeeeCCC--CCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          376 KGLIAIYDARRTPLISLSLIGFIRGPG--DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       376 d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                       +.|.+|.+...  ......+.+.||.  +.-..+.|||||++     |+-|.++|++++|+.-
T Consensus       407 -N~i~ifs~~~~--~r~nkkK~feGh~vaGys~~v~fSpDG~~-----l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  407 -NYIAIFSTVPP--FRLNKKKRFEGHSVAGYSCQVDFSPDGRT-----LCSGDSDGKVNFWDWK  462 (503)
T ss_pred             -ceEEEEecccc--cccCHhhhhcceeccCceeeEEEcCCCCe-----EEeecCCccEEEeech
Confidence             89999986532  2233344567774  34567899999987     8999999999999853

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-27  Score=191.83  Aligned_cols=255  Identities=16%  Similarity=0.155  Sum_probs=196.7

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPG  176 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~  176 (444)
                      |+|++.+-+.+.+++|+.|.+++|||+++ ++.....  ....+|..+.|+++|+.++++..+     +.|.++|++...
T Consensus        55 vW~~Did~~s~~liTGSAD~t~kLWDv~t-Gk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~  131 (327)
T KOG0643|consen   55 VWCCDIDWDSKHLITGSADQTAKLWDVET-GKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS  131 (327)
T ss_pred             EEEEEecCCcceeeeccccceeEEEEcCC-CcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence            99999999999999999999999999999 6655554  557789999999997777776653     678999998332


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFG  254 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~  254 (444)
                      ....-.                  .....+..+ ...++.+-|.|-++.|++|..+| .|.+||+++++...  ...|..
T Consensus       132 ~~~~s~------------------ep~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G-~is~~da~~g~~~v~s~~~h~~  191 (327)
T KOG0643|consen  132 SDIDSE------------------EPYLKIPTP-DSKITSALWGPLGETIIAGHEDG-SISIYDARTGKELVDSDEEHSS  191 (327)
T ss_pred             hhhccc------------------CceEEecCC-ccceeeeeecccCCEEEEecCCC-cEEEEEcccCceeeechhhhcc
Confidence            111000                  112233334 37899999999999999999998 99999999986543  456788


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      .|+.++++||..++++++.|.+-++||..+-+.++......+|++.+++|....++.+++.+.++-.-.- .....++.+
T Consensus       192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~-~r~GKFEAr  270 (327)
T KOG0643|consen  192 KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTS-TRAGKFEAR  270 (327)
T ss_pred             ccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeec-ccccchhhh
Confidence            9999999999999999999999999999998887666678899999999999888887665433322211 111112222


Q ss_pred             cCCC-CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          335 LLPV-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       335 ~~~~-~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .... -.+++..+++|- +|++++|+|+|+..++|+.|      |.|++.....
T Consensus       271 Fyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED------G~VR~h~Fd~  318 (327)
T KOG0643|consen  271 FYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED------GYVRLHHFDS  318 (327)
T ss_pred             HHHHHHHHHhccccccccCcceeEECCCCcccccCCCC------ceEEEEEecc
Confidence            2211 234567788898 99999999999999999999      9999987654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3e-27  Score=191.06  Aligned_cols=237  Identities=18%  Similarity=0.318  Sum_probs=193.4

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|...|.+++|+-+|.+|++++.|+++.+|+++....                       ......++|+ +.|..++|
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----------------------~~~~~~~gh~-~svdql~w   72 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----------------------RKELVYRGHT-DSVDQLCW   72 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----------------------hhhhcccCCC-cchhhhee
Confidence            47889999999999999999999999999999983311                       1122456776 78999999


Q ss_pred             cc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCcee
Q 013347          220 GP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT  298 (444)
Q Consensus       220 sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~  298 (444)
                      +| +...|++++.|. +|++||++.+++.......+.-..+.|+|+|.+++.++.|..|.+.|.++.+..........++
T Consensus        73 ~~~~~d~~atas~dk-~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n  151 (313)
T KOG1407|consen   73 DPKHPDLFATASGDK-TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN  151 (313)
T ss_pred             CCCCCcceEEecCCc-eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee
Confidence            87 667889999998 9999999999998877777666779999999999999999999999999988766666677889


Q ss_pred             EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccc
Q 013347          299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKG  377 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~  377 (444)
                      .++|+.++.+++.. .+.+.+.++.+-             ..+++.+++.|. ...++.|+|+|+|+|+|+.|      .
T Consensus       152 e~~w~~~nd~Fflt-~GlG~v~ILsyp-------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD------A  211 (313)
T KOG1407|consen  152 EISWNNSNDLFFLT-NGLGCVEILSYP-------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD------A  211 (313)
T ss_pred             eeeecCCCCEEEEe-cCCceEEEEecc-------------ccccccccccCCcceEEEEECCCCceEeecccc------c
Confidence            99999776666544 444666666652             567788999998 88999999999999999999      8


Q ss_pred             eEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347          378 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  431 (444)
Q Consensus       378 ~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i  431 (444)
                      .+.+||++.     ..+.+.+.-+.-+|+.++||.||++     |+.+.+|-.|
T Consensus       212 lvSLWD~~E-----LiC~R~isRldwpVRTlSFS~dg~~-----lASaSEDh~I  255 (313)
T KOG1407|consen  212 LVSLWDVDE-----LICERCISRLDWPVRTLSFSHDGRM-----LASASEDHFI  255 (313)
T ss_pred             eeeccChhH-----hhhheeeccccCceEEEEeccCcce-----eeccCccceE
Confidence            999999985     3334567778889999999999998     4444444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=2.9e-27  Score=199.23  Aligned_cols=238  Identities=15%  Similarity=0.174  Sum_probs=205.8

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+-|.|+++.|.+..+++++.|++++|||+.++                         .+..++.+|. ..|..+++
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-------------------------~LkltltGhi-~~vr~vav  201 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-------------------------QLKLTLTGHI-ETVRGVAV  201 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-------------------------eEEEeecchh-heeeeeee
Confidence            599999999999999777888888999999999933                         3556788886 89999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCce
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFV  297 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v  297 (444)
                      |+--.++++++.|+ .|+.||++.++.++ ..+|-+.|.+++.+|.-+.|++|+.|.++++||+++... ..+.+|...|
T Consensus       202 S~rHpYlFs~gedk-~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V  280 (460)
T KOG0285|consen  202 SKRHPYLFSAGEDK-QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV  280 (460)
T ss_pred             cccCceEEEecCCC-eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc
Confidence            99999999999998 99999999988776 778899999999999999999999999999999999776 6688999999


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      .++.+.|....++++ +.|.+++.|++.             .++...++..|. .|.+++.+|....+|+++.|      
T Consensus       281 ~~V~~~~~dpqvit~-S~D~tvrlWDl~-------------agkt~~tlt~hkksvral~lhP~e~~fASas~d------  340 (460)
T KOG0285|consen  281 ASVMCQPTDPQVITG-SHDSTVRLWDLR-------------AGKTMITLTHHKKSVRALCLHPKENLFASASPD------  340 (460)
T ss_pred             eeEEeecCCCceEEe-cCCceEEEeeec-------------cCceeEeeecccceeeEEecCCchhhhhccCCc------
Confidence            999999988888865 555667766654             355567788888 99999999999999999886      


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                       .|+-|++..+...     ..+.+|...|.+++...||      ++..|-++|.++||+-
T Consensus       341 -nik~w~~p~g~f~-----~nlsgh~~iintl~~nsD~------v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  341 -NIKQWKLPEGEFL-----QNLSGHNAIINTLSVNSDG------VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             -cceeccCCccchh-----hccccccceeeeeeeccCc------eEEEcCCceEEEEEec
Confidence             6999999987765     5588999999999988886      4667788999998874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.5e-27  Score=205.31  Aligned_cols=274  Identities=13%  Similarity=0.156  Sum_probs=208.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.+++|+|...+=......-.+.||+..+. .....+ ......|+++.|..||+.++++...|.|+|||+.+.     
T Consensus        28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~-~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----  100 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR-SVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----  100 (487)
T ss_pred             cceeEecCCCCCCceEEecccEEEEEecchh-hhhhhH-HhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----
Confidence            5999999997654333345667899998863 233323 366788999999999654444445699999996521     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGT-PIRRGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~  258 (444)
                                          ..++.+.+|+ .+|..+.|+|+++. +++|+.|+ .+++||+.+...+ .+.+|+..|++
T Consensus       101 --------------------~iLR~~~ah~-apv~~~~f~~~d~t~l~s~sDd~-v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen  101 --------------------VILRQLYAHQ-APVHVTKFSPQDNTMLVSGSDDK-VVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             --------------------HHHHHHhhcc-CceeEEEecccCCeEEEecCCCc-eEEEEEcCCcEEEEEecCCcceeEe
Confidence                                1234567775 89999999996655 55555555 9999999988764 47789999999


Q ss_pred             EEEecCC-CeEEEEecCCcEEEEECCCCc-eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          259 LKWSPTG-DYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       259 ~~~sp~~-~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .+|+|.. ..+++|+.||+|++||++... ......|..+|.++.+-|.|..|+++++  ..+.+|++-.          
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~----------  226 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTT----------  226 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecC----------
Confidence            9999964 467999999999999999874 3455689999999999999999998765  4466676632          


Q ss_pred             CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                        ..+.+.....|. .|+++.+..++..|++++-|      +.+++||+.+-+.+     ..+. ..++|.+++.|||++
T Consensus       227 --G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD------~~VKVfd~t~~Kvv-----~s~~-~~~pvLsiavs~dd~  292 (487)
T KOG0310|consen  227 --GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD------RHVKVFDTTNYKVV-----HSWK-YPGPVLSIAVSPDDQ  292 (487)
T ss_pred             --CceehhhhhcccceEEEEEeecCCceEeecccc------cceEEEEccceEEE-----Eeee-cccceeeEEecCCCc
Confidence              223344444465 99999999999999999998      99999997764443     2222 367899999999877


Q ss_pred             CCCCceEEEEeccceeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~  434 (444)
                      -     +.+|++||.+..-
T Consensus       293 t-----~viGmsnGlv~~r  306 (487)
T KOG0310|consen  293 T-----VVIGMSNGLVSIR  306 (487)
T ss_pred             e-----EEEecccceeeee
Confidence            4     8999999998754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=5.8e-28  Score=193.96  Aligned_cols=251  Identities=14%  Similarity=0.214  Sum_probs=207.8

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW  151 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~  151 (444)
                      .+..++.||.+.                  |++..++.+..+.|+++.|-+-+|||.-+ +.....+  .|..-|.+++|
T Consensus        50 dwigtfeghkga------------------vw~~~l~~na~~aasaaadftakvw~a~t-gdelhsf--~hkhivk~~af  108 (334)
T KOG0278|consen   50 DWIGTFEGHKGA------------------VWSATLNKNATRAASAAADFTAKVWDAVT-GDELHSF--EHKHIVKAVAF  108 (334)
T ss_pred             CcEEeeeccCcc------------------eeeeecCchhhhhhhhcccchhhhhhhhh-hhhhhhh--hhhheeeeEEe
Confidence            445666777665                  99999999999999999999999999988 5555554  67778999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347          152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  231 (444)
Q Consensus       152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  231 (444)
                      +.|.++|++++.+..++|||++.++.+..                        .+.+|. +.|..+-|....+.|++++.
T Consensus       109 ~~ds~~lltgg~ekllrvfdln~p~App~------------------------E~~ght-g~Ir~v~wc~eD~~iLSSad  163 (334)
T KOG0278|consen  109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPK------------------------EISGHT-GGIRTVLWCHEDKCILSSAD  163 (334)
T ss_pred             cccchhhhccchHHHhhhhhccCCCCCch------------------------hhcCCC-CcceeEEEeccCceEEeecc
Confidence            99999999999999999999986554322                        356675 89999999999899999988


Q ss_pred             CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEE
Q 013347          232 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       232 d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  311 (444)
                      |+ +|++||.+++........+..|.++.++++|++|.++ ..+.|.+||..+-...+.......|.+.+++|+...++ 
T Consensus       164 d~-tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV-  240 (334)
T KOG0278|consen  164 DK-TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV-  240 (334)
T ss_pred             CC-ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE-
Confidence            87 9999999999999888889999999999999977655 46789999999887765555667899999999986555 


Q ss_pred             EEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +++++..++.+++.             ++..+..+ ++|- +|.++.|+|||...|+||.|      |+|++|....++.
T Consensus       241 aGged~~~~kfDy~-------------TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED------GTirlWQt~~~~~  301 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYN-------------TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED------GTIRLWQTTPGKT  301 (334)
T ss_pred             ecCcceEEEEEecc-------------CCceeeecccCCCCceEEEEECCCCceeeccCCC------ceEEEEEecCCCc
Confidence            55667777777764             34455554 6776 99999999999999999999      9999999876554


Q ss_pred             E
Q 013347          390 I  390 (444)
Q Consensus       390 ~  390 (444)
                      .
T Consensus       302 ~  302 (334)
T KOG0278|consen  302 Y  302 (334)
T ss_pred             h
Confidence            3

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1e-26  Score=213.42  Aligned_cols=248  Identities=11%  Similarity=0.132  Sum_probs=202.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC---
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN---  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~---  177 (444)
                      .+.+..|-|.++++++|...|.+.|||+.. ....... ..|.+.|++++.+||+..+++++.|.+|++||...-..   
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g  491 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG  491 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc
Confidence            378899999999999999999999999997 3444444 48999999999999999999999999999999862111   


Q ss_pred             -cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCC
Q 013347          178 -AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGG  255 (444)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~  255 (444)
                       ...+.+.                ...+++.-  ...|.|+.+||||++|+.+=-|+ +|+||-+.+-+.. .+.+|+-+
T Consensus       492 t~~k~lsl----------------~~~rtLel--~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKFflsLYGHkLP  552 (888)
T KOG0306|consen  492 TQKKVLSL----------------KHTRTLEL--EDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKFFLSLYGHKLP  552 (888)
T ss_pred             ccceeeee----------------ccceEEec--cccEEEEEEcCCCcEEEEEeccC-eEEEEEecceeeeeeecccccc
Confidence             1110000                01122332  36899999999999999999998 9999999987654 58899999


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      |.|+..+||++.+++|+.|.+|++|-++=|.+ +.+.+|...|+++.|-|....++ +++.++.+..|+   ..      
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF-t~gKD~kvKqWD---g~------  622 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF-TCGKDGKVKQWD---GE------  622 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE-EecCcceEEeec---hh------
Confidence            99999999999999999999999999999998 56889999999999999665555 555555555554   21      


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                          ....++++.+|. .|++++.+|+|.+++++|.|      .+|++|......+
T Consensus       623 ----kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD------~sIRlwE~tde~~  668 (888)
T KOG0306|consen  623 ----KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD------KSIRLWERTDEIL  668 (888)
T ss_pred             ----hhhhheeeccchheeeeeEEcCCCCeEEeccCC------ceeEeeeccCcce
Confidence                567788999998 99999999999999999999      9999998765443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=5.1e-26  Score=196.36  Aligned_cols=280  Identities=15%  Similarity=0.241  Sum_probs=220.6

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ..++.++...|....+++|+.|..+.++|... ++...++ .||...|+.+.++|+...+++++.|..|+||.......+
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~-~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATL-KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecch-hhhhhhc-cCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence            44799999999888999999999999999987 4444444 699999999999999888888889999999998744322


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC---CC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GG  255 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~  255 (444)
                      .                         ..+.| +.+|+.+..+|.|.||++++.|+ +..+.|++++.......+.   -.
T Consensus       297 ~-------------------------~~~~h-~~~V~~ls~h~tgeYllsAs~d~-~w~Fsd~~~g~~lt~vs~~~s~v~  349 (506)
T KOG0289|consen  297 T-------------------------SSRPH-EEPVTGLSLHPTGEYLLSASNDG-TWAFSDISSGSQLTVVSDETSDVE  349 (506)
T ss_pred             c-------------------------ccccc-cccceeeeeccCCcEEEEecCCc-eEEEEEccCCcEEEEEeeccccce
Confidence            2                         24455 48999999999999999999998 9999999999887655553   45


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +++.+|+|||.+|.+|..|+.|++||+..+.. ..+.+|.++|..++|+.+|-|++++++++ .+..|+++.        
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRK--------  420 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRK--------  420 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehh--------
Confidence            89999999999999999999999999998776 56889999999999999999999887664 367777653        


Q ss_pred             cCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          335 LLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                           ....+++.-..  ++.++.|.+.|++|+.++.+      =.|++++-.+.   .+..+..+..|.+..+.+.|..
T Consensus       421 -----l~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k---~W~~~~~~~~~sg~st~v~Fg~  486 (506)
T KOG0289|consen  421 -----LKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKTK---SWTEIKELADHSGLSTGVRFGE  486 (506)
T ss_pred             -----hcccceeeccccccceeEEEcCCCCeEEeecce------eEEEEEecccc---cceeeehhhhcccccceeeecc
Confidence                 23344444433  69999999999999999765      34444443332   2555566777887888999988


Q ss_pred             CCCCCCCceEEEEeccceeeeee
Q 013347          413 HDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       413 dg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +.+|     ++.+.-+-.+.+|.
T Consensus       487 ~aq~-----l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  487 HAQY-----LASTSMDAILRLYA  504 (506)
T ss_pred             cceE-----EeeccchhheEEee
Confidence            7766     44443444444443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=1.5e-26  Score=191.56  Aligned_cols=283  Identities=15%  Similarity=0.209  Sum_probs=213.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCC----------------C-CceeEEecCCCCCeEEEEEeeCCCeEEEEec
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------------G-KDACILTSDSQRDVKVLEWRPNGGRSLSVGC  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----------------~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~  163 (444)
                      ++++.+|||||.++|+|+.|..|+|.|++..                . ..++.+ -.|.+.|+++.|+|....|++++.
T Consensus       114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS~sr  192 (430)
T KOG0640|consen  114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILISGSR  192 (430)
T ss_pred             ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEeccC
Confidence            4999999999999999999999999999721                0 111222 379999999999999777778888


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      |++|++||+......+.+.                      .++.  ..+|.++.|+|.|.+|+.|.... ++++||+.+
T Consensus       193 D~tvKlFDfsK~saKrA~K----------------------~~qd--~~~vrsiSfHPsGefllvgTdHp-~~rlYdv~T  247 (430)
T KOG0640|consen  193 DNTVKLFDFSKTSAKRAFK----------------------VFQD--TEPVRSISFHPSGEFLLVGTDHP-TLRLYDVNT  247 (430)
T ss_pred             CCeEEEEecccHHHHHHHH----------------------Hhhc--cceeeeEeecCCCceEEEecCCC-ceeEEeccc
Confidence            9999999997332211111                      1222  25899999999999999998887 999999999


Q ss_pred             CCcee----eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cC-CCceeEEEECCCCCEEEEEEcCC
Q 013347          244 GLGTP----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-ST-SGFVTGATWDPEGRMILLAFAGS  316 (444)
Q Consensus       244 ~~~~~----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~-~~~v~~~~~sp~g~~l~~~~~~~  316 (444)
                      .++..    -.+|.+.|+++.+++.+++.++++.||.|++||--++++.. +. .| ...|.+..|..+|++++++ +.+
T Consensus       248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~D  326 (430)
T KOG0640|consen  248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKD  326 (430)
T ss_pred             eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec-CCc
Confidence            87653    45678999999999999999999999999999988888743 32 44 4568999999999999965 444


Q ss_pred             ceEEEEEeecCCCCcCCCcCCCCcccccccccCC------ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ..++.|.+.             +++.++...|..      --+...|+....|++.-.+..     +.+.-||.++....
T Consensus       327 S~vkLWEi~-------------t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas-----~slcsWdaRtadr~  388 (430)
T KOG0640|consen  327 STVKLWEIS-------------TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS-----NSLCSWDARTADRV  388 (430)
T ss_pred             ceeeeeeec-------------CCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc-----Cceeeccccchhhh
Confidence            556666654             345555555442      234566888888888766554     78999999986655


Q ss_pred             EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ...    --||.+.+..+.-||.+--    ++ -|.+|-+++||-..
T Consensus       389 ~l~----slgHn~a~R~i~HSP~~p~----Fm-TcsdD~raRFWyrr  426 (430)
T KOG0640|consen  389 ALL----SLGHNGAVRWIVHSPVEPA----FM-TCSDDFRARFWYRR  426 (430)
T ss_pred             hhc----ccCCCCCceEEEeCCCCCc----ee-eecccceeeeeeec
Confidence            221    2389999999999997543    44 45578888888654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5.4e-26  Score=188.28  Aligned_cols=274  Identities=11%  Similarity=0.096  Sum_probs=201.5

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|.++.|+|.+..|++++.||.+++|++... .....  ..|..++.+++|.++ ...++++.||.|+.+|+++.... 
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~--~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-   88 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLK--FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-   88 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhh--eecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence            35999999999999999999999999999973 33333  368899999999997 88999999999999999844321 


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  259 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~  259 (444)
                                               .+..| ...|.|+.+++....+++|+.|+ +|++||.+.....-.......|.++
T Consensus        89 -------------------------~igth-~~~i~ci~~~~~~~~vIsgsWD~-~ik~wD~R~~~~~~~~d~~kkVy~~  141 (323)
T KOG1036|consen   89 -------------------------QIGTH-DEGIRCIEYSYEVGCVISGSWDK-TIKFWDPRNKVVVGTFDQGKKVYCM  141 (323)
T ss_pred             -------------------------eeccC-CCceEEEEeeccCCeEEEcccCc-cEEEEeccccccccccccCceEEEE
Confidence                                     23344 48999999999888999999998 9999999975444444555688888


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCcee---ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      ...  ++.|++|+.+..|.+||+++....   .-......++++++-|++.-.++++ -++++..=.+... +  ...-.
T Consensus       142 ~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s-~--~~~sk  215 (323)
T KOG1036|consen  142 DVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDS-E--EAQSK  215 (323)
T ss_pred             ecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCc-h--HHhhh
Confidence            764  788999999999999999986652   1235566789999999776666443 3344443322211 0  00000


Q ss_pred             CCCcccccccccC-C---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          337 PVDLPDIVSLTGS-Q---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       337 ~~~~~~~~~~~~~-~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      ....++-+..... .   +|++++|+|-.+.||||+.|      |.|.+||+.+++.+     ..+......|.+++|+.
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD------G~V~~Wd~~~rKrl-----~q~~~~~~SI~slsfs~  284 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD------GIVNIWDLFNRKRL-----KQLAKYETSISSLSFSM  284 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccceEEecCCC------ceEEEccCcchhhh-----hhccCCCCceEEEEecc
Confidence            0011111111111 1   89999999999999999999      99999999987765     44555566799999998


Q ss_pred             CCCCCCCceEEEEec
Q 013347          413 HDKFKQGPLLSVCWS  427 (444)
Q Consensus       413 dg~~~~~~~l~~~~~  427 (444)
                      ||..     ||++.+
T Consensus       285 dG~~-----LAia~s  294 (323)
T KOG1036|consen  285 DGSL-----LAIASS  294 (323)
T ss_pred             CCCe-----EEEEec
Confidence            8764     777744

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=1e-27  Score=201.25  Aligned_cols=274  Identities=12%  Similarity=0.163  Sum_probs=212.4

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .+|+|+.+  |...+++|..|++|+|||.++ -....++ .+|++.|.|+.|..  +.++++++|.+|++||++++..  
T Consensus       198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~-~~c~~~L-~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~--  269 (499)
T KOG0281|consen  198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-LECLKIL-TGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEP--  269 (499)
T ss_pred             CceEEEEe--cchhhhcccccCceEEecccc-HHHHHhh-hcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCch--
Confidence            36888887  456799999999999999987 4444444 59999999999864  4677888899999999995543  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGG  255 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~  255 (444)
                                             ++++-+|. ..|..+.|+  ..++++++.|. ++.+||+.....+    .+.+|...
T Consensus       270 -----------------------l~tlihHc-eaVLhlrf~--ng~mvtcSkDr-siaVWdm~sps~it~rrVLvGHrAa  322 (499)
T KOG0281|consen  270 -----------------------LNTLIHHC-EAVLHLRFS--NGYMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAA  322 (499)
T ss_pred             -----------------------hhHHhhhc-ceeEEEEEe--CCEEEEecCCc-eeEEEeccCchHHHHHHHHhhhhhh
Confidence                                   34455665 789999996  45899999998 9999999877533    25678899


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      |..+.|+  .+++++++.|.+|++|++.+.+. ..+.+|...|.|+.+  .|+++++| +.+.+++.|++.         
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSG-SSDntIRlwdi~---------  388 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG-SSDNTIRLWDIE---------  388 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEec-CCCceEEEEecc---------
Confidence            9999995  66999999999999999999988 567799999988887  46666654 555666666653         


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE----EEEeeeeeCCCCCCccee
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS----LSLIGFIRGPGDNPKPVA  409 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~i~~v~  409 (444)
                          .+.+++.+.||. -|.++.|  |.+.+++|+.|      |+|+|||+..+.-..    ...+.++..|++.|..+.
T Consensus       389 ----~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD------GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ  456 (499)
T KOG0281|consen  389 ----CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ  456 (499)
T ss_pred             ----ccHHHHHHhchHHhhhheee--cCceeeecccc------ceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence                578889999999 7899998  56789999887      999999998654321    112344556888888887


Q ss_pred             eeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347          410 FSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                      |..-       -+..+.-+.+|.+|+|.-.+.
T Consensus       457 FD~f-------qIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  457 FDEF-------QIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             ecce-------EEEeccCCCeEEEEEcCCCCc
Confidence            7431       144456688999999876553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=9.1e-26  Score=229.31  Aligned_cols=246  Identities=15%  Similarity=0.199  Sum_probs=183.8

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|.+++|++ ++.+||+++.||+|+|||+.+ ++....+ .+|.+.|++++|+| ++..|++++.|++|++||+....  
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--  609 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVAR-SQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--  609 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--
Confidence            477899987 478999999999999999986 4444443 58999999999997 66678888889999999997332  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCc--eeeecCCCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGG  255 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~~~~~  255 (444)
                                             ....+..+  ..+.++.|+ +++.+|++|+.|+ .|++||+++...  ..+..|...
T Consensus       610 -----------------------~~~~~~~~--~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~~~~~~~~~h~~~  663 (793)
T PLN00181        610 -----------------------SIGTIKTK--ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPKLPLCTMIGHSKT  663 (793)
T ss_pred             -----------------------EEEEEecC--CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCCccceEecCCCCC
Confidence                                   22233333  578999995 5799999999998 999999987652  345678899


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCC------c-eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTW------T-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~------~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      |.+++|. ++.+|++++.|++|++||++.+      + ...+.+|...+.+++|+|++.+|++++ .++.+..|+.....
T Consensus       664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~  741 (793)
T PLN00181        664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPM  741 (793)
T ss_pred             EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCC
Confidence            9999997 7889999999999999999753      2 245678999999999999999988764 45666666642211


Q ss_pred             CCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      +.............-.....+. .|.+++|+|++.+|++++.+      |.|+||++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d------G~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST------GNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC------CcEEEEec
Confidence            0000000000000001122333 79999999999999999988      99999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=194.33  Aligned_cols=235  Identities=17%  Similarity=0.208  Sum_probs=187.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|+++.||.||.+||+|..+|.|+||...+ +.....+. ..-+.+.=|.|+|.+..|++++.||.+-+|.+..+     
T Consensus       108 SVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-----  180 (399)
T KOG0296|consen  108 SVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-----  180 (399)
T ss_pred             ceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc-----
Confidence            599999999999999999999999999998 44444443 34455666899999888888888999999999833     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---------
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---------  251 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---------  251 (444)
                                          ...+.+.+|. .++++-.|.|+|++++++..|| +|++||..+++......         
T Consensus       181 --------------------~~~kv~~Gh~-~~ct~G~f~pdGKr~~tgy~dg-ti~~Wn~ktg~p~~~~~~~e~~~~~~  238 (399)
T KOG0296|consen  181 --------------------ALCKVMSGHN-SPCTCGEFIPDGKRILTGYDDG-TIIVWNPKTGQPLHKITQAEGLELPC  238 (399)
T ss_pred             --------------------ceeeEecCCC-CCcccccccCCCceEEEEecCc-eEEEEecCCCceeEEecccccCcCCc
Confidence                                1345677775 8999999999999999999998 99999998873322111         


Q ss_pred             -------------------------------------------CCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCC
Q 013347          252 -------------------------------------------GFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       252 -------------------------------------------~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~  285 (444)
                                                                 +...+.++.+.|   .-.+.|+|+.||+|.|||+...
T Consensus       239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence                                                       011122333333   3345688999999999999998


Q ss_pred             ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEE
Q 013347          286 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL  364 (444)
Q Consensus       286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l  364 (444)
                      +.+....|...|..+.|-+ ..+|++++.+ +.++.|+.+             +++.+.+++||. .|.+++++|+++++
T Consensus       319 ~~R~~c~he~~V~~l~w~~-t~~l~t~c~~-g~v~~wDaR-------------tG~l~~~y~GH~~~Il~f~ls~~~~~v  383 (399)
T KOG0296|consen  319 TLRHICEHEDGVTKLKWLN-TDYLLTACAN-GKVRQWDAR-------------TGQLKFTYTGHQMGILDFALSPQKRLV  383 (399)
T ss_pred             hhheeccCCCceEEEEEcC-cchheeeccC-ceEEeeecc-------------ccceEEEEecCchheeEEEEcCCCcEE
Confidence            8888888999999999999 6677767554 556666643             678888999999 99999999999999


Q ss_pred             EEEecCCCccccceEEEEEcC
Q 013347          365 AVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +++|.|      ++.+||+..
T Consensus       384 vT~s~D------~~a~VF~v~  398 (399)
T KOG0296|consen  384 VTVSDD------NTALVFEVP  398 (399)
T ss_pred             EEecCC------CeEEEEecC
Confidence            999998      999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=2.1e-27  Score=199.43  Aligned_cols=252  Identities=16%  Similarity=0.255  Sum_probs=195.6

Q ss_pred             cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE  150 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~  150 (444)
                      ......|.||++.                  |.|+.|.  .+.|++|+.|.+|+|||+++ ++...++ .+|.+.|..+.
T Consensus       227 ~~c~~~L~GHtGS------------------VLCLqyd--~rviisGSSDsTvrvWDv~t-ge~l~tl-ihHceaVLhlr  284 (499)
T KOG0281|consen  227 LECLKILTGHTGS------------------VLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEPLNTL-IHHCEAVLHLR  284 (499)
T ss_pred             HHHHHhhhcCCCc------------------EEeeecc--ceEEEecCCCceEEEEeccC-CchhhHH-hhhcceeEEEE
Confidence            3444667788766                  7777775  45999999999999999998 6666555 48999999999


Q ss_pred             EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347          151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS  230 (444)
Q Consensus       151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  230 (444)
                      |+.  +.+++++.|.++.+||+..+....                      +.+.+.||. ..|+.+.|+  .+++++++
T Consensus       285 f~n--g~mvtcSkDrsiaVWdm~sps~it----------------------~rrVLvGHr-AaVNvVdfd--~kyIVsAS  337 (499)
T KOG0281|consen  285 FSN--GYMVTCSKDRSIAVWDMASPTDIT----------------------LRRVLVGHR-AAVNVVDFD--DKYIVSAS  337 (499)
T ss_pred             EeC--CEEEEecCCceeEEEeccCchHHH----------------------HHHHHhhhh-hheeeeccc--cceEEEec
Confidence            986  589999999999999998543211                      234577885 899999984  56999999


Q ss_pred             eCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCE
Q 013347          231 YESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM  308 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~  308 (444)
                      .|. +|++|++.+.+.+. +.+|+..|-|+.+  .++++++|+.|.+|++||+..|.+ ..+.+|..-|.++.|.  .+.
T Consensus       338 gDR-TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~kr  412 (499)
T KOG0281|consen  338 GDR-TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKR  412 (499)
T ss_pred             CCc-eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cce
Confidence            998 99999999999887 6678889988877  589999999999999999999998 5678999999999994  556


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      |++| .-++++.+|++...   ++.+ .+...-++.++..|. .|..+.|  |...+++++.|      .+|.|||...+
T Consensus       413 IVSG-aYDGkikvWdl~aa---ldpr-a~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHd------dtILiWdFl~~  479 (499)
T KOG0281|consen  413 IVSG-AYDGKIKVWDLQAA---LDPR-APASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHD------DTILIWDFLNG  479 (499)
T ss_pred             eeec-cccceEEEEecccc---cCCc-ccccchHHHhhhhccceeEEEee--cceEEEeccCC------CeEEEEEcCCC
Confidence            7765 33456666665332   1111 111223566666777 8999998  45678888888      89999999875


Q ss_pred             Ce
Q 013347          388 PL  389 (444)
Q Consensus       388 ~~  389 (444)
                      ..
T Consensus       480 ~~  481 (499)
T KOG0281|consen  480 PP  481 (499)
T ss_pred             Cc
Confidence            53

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=2.5e-25  Score=199.69  Aligned_cols=234  Identities=21%  Similarity=0.391  Sum_probs=187.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+..+.|+|++++|++++.+|.+++|++.. ++....+ ..|...|.++.|++++..+++++.++.|++|++...     
T Consensus        53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----  125 (289)
T cd00200          53 PVRDVAASADGTYLASGSSDKTIRLWDLET-GECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-----  125 (289)
T ss_pred             ceeEEEECCCCCEEEEEcCCCeEEEEEcCc-ccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc-----
Confidence            478999999999999999999999999986 3344444 478889999999999544444444999999999722     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                          .....+..|. ..+.+++|+|+++++++++.++ .|++||+++++... +..+...+.++
T Consensus       126 --------------------~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~  183 (289)
T cd00200         126 --------------------KCLTTLRGHT-DWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTGKCVATLTGHTGEVNSV  183 (289)
T ss_pred             --------------------EEEEEeccCC-CcEEEEEEcCcCCEEEEEcCCC-cEEEEEccccccceeEecCccccceE
Confidence                                2333445554 7899999999998888888787 99999998776554 44566789999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      +|+|+++.+++++.++.|++||+++++... +..|...+.++.|+|++.+++++ +.++.+..|++.             
T Consensus       184 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~i~~~~-------------  249 (289)
T cd00200         184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG-SEDGTIRVWDLR-------------  249 (289)
T ss_pred             EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE-cCCCcEEEEEcC-------------
Confidence            999999999999999999999999877744 44888899999999997777655 445667777653             


Q ss_pred             CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      ....+..+..|. .|.+++|+|++++|++++.|      +.|++|+
T Consensus       250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~iw~  289 (289)
T cd00200         250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD------GTIRIWD  289 (289)
T ss_pred             CceeEEEccccCCcEEEEEECCCCCEEEEecCC------CeEEecC
Confidence            234445556666 89999999999999999988      9999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.2e-26  Score=180.82  Aligned_cols=243  Identities=15%  Similarity=0.258  Sum_probs=195.0

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..+.++|.++.|+-||++.++++.|.+|++|+..         .+                .+++++.+|. ..|..++.
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~---------rg----------------~liktYsghG-~EVlD~~~   67 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL---------RG----------------ALIKTYSGHG-HEVLDAAL   67 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeeccc---------cc----------------ceeeeecCCC-ceeeeccc
Confidence            5899999999999999999999999999999987         22                4778888885 89999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccCCC
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSG  295 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~  295 (444)
                      +.|...|++++.|. .+.+||+.+++..+ +.+|.+.|..++|+.+...+++|+.|.++++||.++.....   +.....
T Consensus        68 s~Dnskf~s~GgDk-~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D  146 (307)
T KOG0316|consen   68 SSDNSKFASCGGDK-AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD  146 (307)
T ss_pred             cccccccccCCCCc-eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence            99999999999998 99999999998776 67789999999999999999999999999999999876533   345566


Q ss_pred             ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347          296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      .|.++..+.  ..|+ +++-+++++.++++..             ....-.-+| +|+++.|++||+.+.+++.|     
T Consensus       147 ~V~Si~v~~--heIv-aGS~DGtvRtydiR~G-------------~l~sDy~g~-pit~vs~s~d~nc~La~~l~-----  204 (307)
T KOG0316|consen  147 GVSSIDVAE--HEIV-AGSVDGTVRTYDIRKG-------------TLSSDYFGH-PITSVSFSKDGNCSLASSLD-----  204 (307)
T ss_pred             ceeEEEecc--cEEE-eeccCCcEEEEEeecc-------------eeehhhcCC-cceeEEecCCCCEEEEeecc-----
Confidence            788888753  3344 5566788888887532             211112222 89999999999999999998     


Q ss_pred             cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          376 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       376 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                       +++++.|-.+|+++     +.++||.+.-+.+..+-.   ..-....-|.+||.|+||+|--..
T Consensus       205 -stlrLlDk~tGklL-----~sYkGhkn~eykldc~l~---qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  205 -STLRLLDKETGKLL-----KSYKGHKNMEYKLDCCLN---QSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             -ceeeecccchhHHH-----HHhcccccceeeeeeeec---ccceeEEeccCCceEEEEEeccce
Confidence             99999999998886     678888765443332221   122356678999999999986443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=3.3e-26  Score=208.31  Aligned_cols=315  Identities=17%  Similarity=0.226  Sum_probs=227.5

Q ss_pred             eEEEEEecCC---CeEEEEECCCeEEEEEccCCCCc-----------------------ee------EEecCCCCCeEEE
Q 013347          102 LQGVSWHQHK---HIVAFISGSTQVIVRDYEDSGKD-----------------------AC------ILTSDSQRDVKVL  149 (444)
Q Consensus       102 v~~~~~sp~g---~~la~~~~dg~v~iw~~~~~~~~-----------------------~~------~~~~~~~~~v~~l  149 (444)
                      |++++|...+   -+||++|.|..|+||.+.-.+..                       ..      .+..+|.+-|+++
T Consensus       194 Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv  273 (764)
T KOG1063|consen  194 IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSV  273 (764)
T ss_pred             hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEE
Confidence            8888888654   47889999999999998643200                       00      1123899999999


Q ss_pred             EEeeCCCeEEEEecCCcEEEEecCCCCCc--ceeeccccc------------ccc--ccccCCCC-----------ceEE
Q 013347          150 EWRPNGGRSLSVGCKGGICIWAPSYPGNA--ASVRSGAAS------------FLG--ALSRGPGT-----------RWTL  202 (444)
Q Consensus       150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~--~~~~~~~~~------------~~~--~~~~~~~~-----------~~~~  202 (444)
                      .|+|.+..|++++.|.++.+|.-+....+  ..+.-|..+            +..  .+..+..+           .|..
T Consensus       274 ~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~  353 (764)
T KOG1063|consen  274 WWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQ  353 (764)
T ss_pred             EEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceee
Confidence            99999889999999999999987743211  111111111            111  11222222           2444


Q ss_pred             EEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC--------------------------------------
Q 013347          203 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--------------------------------------  244 (444)
Q Consensus       203 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~--------------------------------------  244 (444)
                      .....||. +.|.+++|+|.|.+|++++.|- +-+++---..                                      
T Consensus       354 ~~~iSGH~-~~V~dv~W~psGeflLsvs~DQ-TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl  431 (764)
T KOG1063|consen  354 EPVISGHV-DGVKDVDWDPSGEFLLSVSLDQ-TTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL  431 (764)
T ss_pred             cccccccc-ccceeeeecCCCCEEEEecccc-ceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence            44567786 8999999999999999999997 7777532100                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 013347          245 --------------------------------------------------------------------------------  244 (444)
Q Consensus       245 --------------------------------------------------------------------------------  244 (444)
                                                                                                      
T Consensus       432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~  511 (764)
T KOG1063|consen  432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ  511 (764)
T ss_pred             eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence                                                                                            


Q ss_pred             -----CceeeecCCCCeEEEEEecCCCeEEEEecCC-----cEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEE
Q 013347          245 -----LGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       245 -----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~  313 (444)
                           +..++.+|...|.+++.+|+++++++++...     .|++|+..+... +.+..|.-.|+.++|||||++|++. 
T Consensus       512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv-  590 (764)
T KOG1063|consen  512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV-  590 (764)
T ss_pred             hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe-
Confidence                 2234556778899999999999999987643     699999998777 4588999999999999999999977 


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC--CeE
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLI  390 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~--~~~  390 (444)
                         ++++.+.+|........      .......+.|. -|+++.|+|++.+++|+|.|      .+|+||.....  +.+
T Consensus       591 ---sRDRt~sl~~~~~~~~~------e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD------K~VkVW~~~~~~d~~i  655 (764)
T KOG1063|consen  591 ---SRDRTVSLYEVQEDIKD------EFRFACLKAHTRIIWDCSWSPDEKYFATASRD------KKVKVWEEPDLRDKYI  655 (764)
T ss_pred             ---ecCceEEeeeeecccch------hhhhccccccceEEEEcccCcccceeEEecCC------ceEEEEeccCchhhhh
Confidence               44567777654221111      11123366788 79999999999999999999      99999998876  222


Q ss_pred             EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .   ......++..|+.++|.|--....+.++++|...|.|++|...
T Consensus       656 ~---~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  656 S---RFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             h---hhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            1   0023357888999999986555667799999999999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=4.6e-26  Score=200.07  Aligned_cols=280  Identities=16%  Similarity=0.224  Sum_probs=217.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe---cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      -|.++++|...+++.+| ..|.|+|||+...+...-+..   ..-.+-|.++...|||+.|+++|.-.++.|||+..+..
T Consensus       421 vVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp  499 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP  499 (705)
T ss_pred             EEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence            47788899988888886 578899999987533221111   12456789999999999999999999999999985432


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                      ....                       .+... .-...+++.+||.+..+++..|| .|.|||+.+...++ +.+|...+
T Consensus       500 rika-----------------------eltss-apaCyALa~spDakvcFsccsdG-nI~vwDLhnq~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  500 RIKA-----------------------ELTSS-APACYALAISPDAKVCFSCCSDG-NIAVWDLHNQTLVRQFQGHTDGA  554 (705)
T ss_pred             chhh-----------------------hcCCc-chhhhhhhcCCccceeeeeccCC-cEEEEEcccceeeecccCCCCCc
Confidence            2111                       11111 13567789999999999999998 99999999887665 77889999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .|+.+++||..|.+|+-|++||.||++++.........+.|.++.++|++.+++++..+ +.+++++.            
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMen-s~vevlh~------------  621 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMEN-SNVEVLHT------------  621 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeeccc-CcEEEEec------------
Confidence            99999999999999999999999999998775555667889999999999999998655 55666664            


Q ss_pred             CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                        .......+.-|. -|.++.|.+.|+++++.+.|      +-+..|....|.-+.     .. ...+.|.++.+|.|.+
T Consensus       622 --skp~kyqlhlheScVLSlKFa~cGkwfvStGkD------nlLnawrtPyGasiF-----qs-kE~SsVlsCDIS~ddk  687 (705)
T KOG0639|consen  622 --SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASIF-----QS-KESSSVLSCDISFDDK  687 (705)
T ss_pred             --CCccceeecccccEEEEEEecccCceeeecCch------hhhhhccCcccccee-----ec-cccCcceeeeeccCce
Confidence              233344555566 79999999999999999988      899999998776541     11 2367789999999988


Q ss_pred             CCCCceEEEEeccceeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      |     +.-|.-+-.-.+|.++|
T Consensus       688 y-----IVTGSGdkkATVYeV~Y  705 (705)
T KOG0639|consen  688 Y-----IVTGSGDKKATVYEVIY  705 (705)
T ss_pred             E-----EEecCCCcceEEEEEeC
Confidence            7     44455555667777765

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.5e-25  Score=209.20  Aligned_cols=252  Identities=14%  Similarity=0.157  Sum_probs=198.0

Q ss_pred             cccccccccccccccCCCC----ccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347           75 STLHGIISHSIKPLLHPDH----VHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE  150 (444)
Q Consensus        75 ~~l~g~~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~  150 (444)
                      .+|.++..+.+..+.+.-.    .-.-+..+|+.++|+|++.++++|+.|-.|+||+..+ .+....+ .+|-+-|..+.
T Consensus        23 wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL-~GHlDYVRt~~  100 (1202)
T KOG0292|consen   23 WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTL-LGHLDYVRTVF  100 (1202)
T ss_pred             EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhh-ccccceeEEee
Confidence            3445544444555554331    1111244799999999999999999999999999987 4444444 59999999999


Q ss_pred             EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347          151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS  230 (444)
Q Consensus       151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  230 (444)
                      |++.-..+++++.|.+|+||+..+.                         +++..++||. -.|.|.+|+|....++++|
T Consensus       101 FHheyPWIlSASDDQTIrIWNwqsr-------------------------~~iavltGHn-HYVMcAqFhptEDlIVSaS  154 (1202)
T KOG0292|consen  101 FHHEYPWILSASDDQTIRIWNWQSR-------------------------KCIAVLTGHN-HYVMCAQFHPTEDLIVSAS  154 (1202)
T ss_pred             ccCCCceEEEccCCCeEEEEeccCC-------------------------ceEEEEecCc-eEEEeeccCCccceEEEec
Confidence            9999888999999999999999832                         4777899996 8999999999999999999


Q ss_pred             eCCCeEEEEEcCCCC------------------------------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347          231 YESSSFTIWDVAQGL------------------------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW  280 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~------------------------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  280 (444)
                      -|. +|++||+..-+                              ...+.+|...|..++|+|.-..|++|++|+.|++|
T Consensus       155 LDQ-TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlW  233 (1202)
T KOG0292|consen  155 LDQ-TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLW  233 (1202)
T ss_pred             ccc-eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEE
Confidence            998 99999985320                              01234677889999999999999999999999999


Q ss_pred             ECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEE
Q 013347          281 ETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA  356 (444)
Q Consensus       281 d~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~  356 (444)
                      .+...+.   .+..+|.+.|.++-|+|...+|++. ++|..+++|++.             ....+++++... ..+.++
T Consensus       234 rmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn-sEDksirVwDm~-------------kRt~v~tfrrendRFW~la  299 (1202)
T KOG0292|consen  234 RMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN-SEDKSIRVWDMT-------------KRTSVQTFRRENDRFWILA  299 (1202)
T ss_pred             EeccccceeehhhhcccCCcceEEecCccceeEec-CCCccEEEEecc-------------cccceeeeeccCCeEEEEE
Confidence            9876554   4566999999999999998888854 555666666653             345566776444 889999


Q ss_pred             ECCCCCEEEEEec
Q 013347          357 WDASGERLAVSYK  369 (444)
Q Consensus       357 ~spdg~~l~~~~~  369 (444)
                      -+|..+++|+|-.
T Consensus       300 ahP~lNLfAAgHD  312 (1202)
T KOG0292|consen  300 AHPELNLFAAGHD  312 (1202)
T ss_pred             ecCCcceeeeecC
Confidence            9999998877643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.7e-25  Score=185.72  Aligned_cols=257  Identities=18%  Similarity=0.244  Sum_probs=199.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC--eEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|+++|.  ++.++|+|+.|-+|+|||+... .+...+ ..|.+.|+++.|.+.-.  .|++++.||.|.+|+..     
T Consensus        45 sitavAV--s~~~~aSGssDetI~IYDm~k~-~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-----  115 (362)
T KOG0294|consen   45 SITALAV--SGPYVASGSSDETIHIYDMRKR-KQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-----  115 (362)
T ss_pred             ceeEEEe--cceeEeccCCCCcEEEEeccch-hhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcC-----
Confidence            3888887  4799999999999999999973 333333 37899999999998854  89999999999999988     


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                                          .|.++..+++|. +.|+.++.+|.+++.++.+.|+ .+++||+-.++.............
T Consensus       116 --------------------~W~~~~slK~H~-~~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~Gr~a~v~~L~~~at~  173 (362)
T KOG0294|consen  116 --------------------SWELLKSLKAHK-GQVTDLSIHPSGKLALSVGGDQ-VLRTWNLVRGRVAFVLNLKNKATL  173 (362)
T ss_pred             --------------------CeEEeeeecccc-cccceeEecCCCceEEEEcCCc-eeeeehhhcCccceeeccCCccee
Confidence                                889999999997 6799999999999999999998 999999999987777666666667


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      +.|+|.|.+++.+..+ .|-+|.+.+.+..........+.++.|-.. ..+++|.++ .   .+.+++..          
T Consensus       174 v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~~L~vG~d~-~---~i~~~D~d----------  237 (362)
T KOG0294|consen  174 VSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDG-SELLVGGDN-E---WISLKDTD----------  237 (362)
T ss_pred             eEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCC-ceEEEecCC-c---eEEEeccC----------
Confidence            9999999999888765 589999988776444444466778877654 455556444 3   34443321          


Q ss_pred             CcccccccccCC-ceeEEEE--CCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          339 DLPDIVSLTGSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       339 ~~~~~~~~~~~~-~v~~~~~--spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      ...+...+.+|. .|-++.+  .|++.||+++|.|      |.|+|||++........++..+.. ..+++|+...
T Consensus       238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD------G~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~  306 (362)
T KOG0294|consen  238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD------GFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK  306 (362)
T ss_pred             CCccceeeecchhheeeeEEEecCCceEEEEeccC------ceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence            245667788888 8888873  5788999999999      999999998763333333333333 5556666544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.2e-26  Score=188.11  Aligned_cols=339  Identities=14%  Similarity=0.178  Sum_probs=245.3

Q ss_pred             cccccccccccccccccccCCC-CccCccc-----cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC
Q 013347           71 EGLFSTLHGIISHSIKPLLHPD-HVHLLPE-----VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR  144 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~-~~~~~~~-----~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  144 (444)
                      ..+...+++....++.....+. ..++...     .+|+.++.......+.+++.|.+.+||.+++ +.....+ .+|.+
T Consensus       114 qKl~t~~ka~tsrivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y-~GH~G  191 (481)
T KOG0300|consen  114 QKLRTALKAPTSRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATY-TGHTG  191 (481)
T ss_pred             HHHHHhhcCCcchheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeee-ccccc
Confidence            3444555565555554444443 2222221     2699999988888999999999999999998 6776666 49999


Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecC----CCC--Ccceeecc-------ccccccccccCCCC-c-eEEEEEeecc
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPS----YPG--NAASVRSG-------AASFLGALSRGPGT-R-WTLVDFLRSQ  209 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~----~~~--~~~~~~~~-------~~~~~~~~~~~~~~-~-~~~~~~~~~~  209 (444)
                      .|.+++|++.+..+++++.|++..||...    .+.  .+......       ....+..-....++ . -..+..+.+|
T Consensus       192 SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH  271 (481)
T KOG0300|consen  192 SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH  271 (481)
T ss_pred             ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence            99999999998888888999999999843    111  11110000       00000000011111 1 2245678898


Q ss_pred             CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-
Q 013347          210 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-  287 (444)
Q Consensus       210 ~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-  287 (444)
                      . ..|.+..|-..|+.+++++.|. +..+||+++++... +.+|....+.++-+|..+++++.+.|.+.++||.+..-. 
T Consensus       272 ~-~vV~a~dWL~gg~Q~vTaSWDR-TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s  349 (481)
T KOG0300|consen  272 R-AVVSACDWLAGGQQMVTASWDR-TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS  349 (481)
T ss_pred             c-cceEehhhhcCcceeeeeeccc-cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence            6 8999999999999999999998 99999999998776 678899999999999999999999999999999984322 


Q ss_pred             -eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEE
Q 013347          288 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV  366 (444)
Q Consensus       288 -~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  366 (444)
                       ..+.+|...|+++.|..+.+. + +++++.++.+|++.+.            ..++.++....+++.++.+..++.||.
T Consensus       350 V~VFQGHtdtVTS~vF~~dd~v-V-SgSDDrTvKvWdLrNM------------RsplATIRtdS~~NRvavs~g~~iIAi  415 (481)
T KOG0300|consen  350 VAVFQGHTDTVTSVVFNTDDRV-V-SGSDDRTVKVWDLRNM------------RSPLATIRTDSPANRVAVSKGHPIIAI  415 (481)
T ss_pred             eeeecccccceeEEEEecCCce-e-ecCCCceEEEeeeccc------------cCcceeeecCCccceeEeecCCceEEe
Confidence             457799999999999988764 4 4567788888887653            345566666668999999988888887


Q ss_pred             EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          367 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      --.+      ..|++||+....+. -.|...-+||...|.|++|+.+.-.  ..++.+|++. .+.-|.+.
T Consensus       416 PhDN------RqvRlfDlnG~Rla-RlPrtsRqgHrRMV~c~AW~eehp~--cnLftcGFDR-~v~gW~in  476 (481)
T KOG0300|consen  416 PHDN------RQVRLFDLNGNRLA-RLPRTSRQGHRRMVTCCAWLEEHPA--CNLFTCGFDR-MVAGWKIN  476 (481)
T ss_pred             ccCC------ceEEEEecCCCccc-cCCcccccccceeeeeeeccccCcc--cccccccccc-eeeeeEec
Confidence            7655      89999999876554 3344456789999999999976432  4455665543 33334444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2e-25  Score=194.17  Aligned_cols=280  Identities=15%  Similarity=0.177  Sum_probs=217.7

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE---------------e-cCCCCCeEEEEEeeCCCeEEEEec
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL---------------T-SDSQRDVKVLEWRPNGGRSLSVGC  163 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~---------------~-~~~~~~v~~l~~s~~~~~ll~~~~  163 (444)
                      .+|.+++++|+.++.++++.+++|.=|++.++.....+.               . ..|...+.+++.|+||+++++++.
T Consensus       143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~  222 (479)
T KOG0299|consen  143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR  222 (479)
T ss_pred             CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence            479999999999999999999999999998742110111               1 278889999999999999999999


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      |..|.||+.++...                         ++.+.+|. +.|.+++|-.....+++++.|+ .|++|+++.
T Consensus       223 d~~v~Iw~~~t~eh-------------------------v~~~~ghr-~~V~~L~fr~gt~~lys~s~Dr-svkvw~~~~  275 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEH-------------------------VKVFKGHR-GAVSSLAFRKGTSELYSASADR-SVKVWSIDQ  275 (479)
T ss_pred             CceEEEecCcccch-------------------------hhcccccc-cceeeeeeecCccceeeeecCC-ceEEEehhH
Confidence            99999999984433                         33467775 8999999988888899999998 999999987


Q ss_pred             CCce-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          244 GLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       244 ~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      ...+ .+++|+..|..+....-++.+-+|+.|+++++|++.......+.++.+.+.|++|-.+.. +++| ++++.+..|
T Consensus       276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~H-fvsG-SdnG~IaLW  353 (479)
T KOG0299|consen  276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEH-FVSG-SDNGSIALW  353 (479)
T ss_pred             hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccc-eeec-cCCceEEEe
Confidence            7655 478999999999988888888888899999999996665666778999999999976654 4544 556889999


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG  402 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  402 (444)
                      .++.+.+-+...+..-..+....+.+..+|++++..|...++|+|+.+      |.|++|.+..+-. ...++..+. -.
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~------G~vrLW~i~~g~r-~i~~l~~ls-~~  425 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS------GCVRLWKIEDGLR-AINLLYSLS-LV  425 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC------CceEEEEecCCcc-ccceeeecc-cc
Confidence            988765543322211111111122222389999999999999999998      9999999998733 234444444 35


Q ss_pred             CCCcceeeeeCCCC
Q 013347          403 DNPKPVAFSFHDKF  416 (444)
Q Consensus       403 ~~i~~v~~spdg~~  416 (444)
                      +.|++++|+++|++
T Consensus       426 GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  426 GFVNSLAFSNSGKR  439 (479)
T ss_pred             cEEEEEEEccCCCE
Confidence            67899999999994

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.9e-24  Score=202.45  Aligned_cols=240  Identities=14%  Similarity=0.213  Sum_probs=173.2

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCC-----ceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEecC
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~  173 (444)
                      .|++++|+| ++++||+++.|++|+||++...+.     .......+|...|.+++|+|++ +.|++++.|++|+|||+.
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~  156 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE  156 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence            499999999 889999999999999999976321     1122336899999999999986 467777889999999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecC
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRG  252 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~  252 (444)
                      ..                         .....+.+|. ..|.+++|+|+|++|++++.|+ +|++||+++++... +..|
T Consensus       157 tg-------------------------~~~~~l~~h~-~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H  209 (493)
T PTZ00421        157 RG-------------------------KAVEVIKCHS-DQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAH  209 (493)
T ss_pred             CC-------------------------eEEEEEcCCC-CceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecC
Confidence            33                         2334566675 7899999999999999999998 99999999887654 4455


Q ss_pred             CCC-eEEEEEecCCCeEEEEe----cCCcEEEEECCCCce-ec-cc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          253 FGG-LSILKWSPTGDYFFAAK----FDGTFYLWETNTWTS-EP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       253 ~~~-v~~~~~sp~~~~l~~~~----~d~~v~iwd~~~~~~-~~-~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .+. +..+.|.+++..+++++    .|+.|++||+++... .. .. .....+....|++++.++++++.+++.++.|++
T Consensus       210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl  289 (493)
T PTZ00421        210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL  289 (493)
T ss_pred             CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence            543 45678999888877654    478999999987543 22 22 233456667899999999988766788888887


Q ss_pred             ecCCCCcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      .+.             ..+..... +. ++..++|.|.-..=+--  -      -..++|.+....
T Consensus       290 ~~~-------------~~~~~~~~~s~~~~~g~~~~pk~~~dv~~--~------Ei~r~~~l~~~~  334 (493)
T PTZ00421        290 MNE-------------RLTFCSSYSSVEPHKGLCMMPKWSLDTRK--C------EIARFYALTYHS  334 (493)
T ss_pred             eCC-------------ceEEEeeccCCCCCcceEecccccccccc--e------eeeEEEEecCCe
Confidence            532             12222221 12 67788888853211111  1      345777776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=4.1e-25  Score=190.79  Aligned_cols=239  Identities=17%  Similarity=0.255  Sum_probs=191.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|+.+.++|+...+++++.|..|+||...... .... ...|.++|+.+..+|.|.+|++++.|++..+.|+........
T Consensus       263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~-~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~  340 (506)
T KOG0289|consen  263 KITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS-SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV  340 (506)
T ss_pred             EEEEEEeccchhheeecCCcceEEeecccccc-Cccc-cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE
Confidence            59999999999999999999999999998743 3333 358999999999999999999999999999999984433222


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                      +.                       -.. .+-.+++.+|+|||..|.+|..|+ .|+|||+.++.... +.+|.++|..+
T Consensus       341 vs-----------------------~~~-s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlks~~~~a~Fpght~~vk~i  395 (506)
T KOG0289|consen  341 VS-----------------------DET-SDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLKSQTNVAKFPGHTGPVKAI  395 (506)
T ss_pred             Ee-----------------------ecc-ccceeEEeeEcCCceEEeccCCCc-eEEEEEcCCccccccCCCCCCceeEE
Confidence            11                       111 135689999999999999999998 99999999887554 66789999999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +|+.+|-+|+++++|+.|++||++.-+. +++. .....+.++.|.+.|.+++.+ +.+.+++.+.-..+          
T Consensus       396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k----------  464 (506)
T KOG0289|consen  396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTK----------  464 (506)
T ss_pred             EeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccc----------
Confidence            9999999999999999999999998765 2222 333479999999999999977 44455555542222          


Q ss_pred             CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                       .+.++..+..|. ..+.+.|..+.+++++++.|      ..++++.+
T Consensus       465 -~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd------~~l~~~a~  505 (506)
T KOG0289|consen  465 -SWTEIKELADHSGLSTGVRFGEHAQYLASTSMD------AILRLYAL  505 (506)
T ss_pred             -cceeeehhhhcccccceeeecccceEEeeccch------hheEEeec
Confidence             355666777777 77889999999999999998      77777754

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=3.7e-25  Score=192.45  Aligned_cols=262  Identities=14%  Similarity=0.265  Sum_probs=191.2

Q ss_pred             ccceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCce--------eEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEE
Q 013347           99 EVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGIC  168 (444)
Q Consensus        99 ~~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~  168 (444)
                      ...|+.+..-|+. .++|+.+..+.+.|||........        .....+|...-++|+|++.. ..|++++.|++|+
T Consensus       124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~  203 (422)
T KOG0264|consen  124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC  203 (422)
T ss_pred             CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence            3347777777755 456677889999999997642111        11335888888899999864 4677778889999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCC--C
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG--L  245 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~--~  245 (444)
                      +||+.........                  ......+.+|. ..|..++|++ +...|++++.|+ .+.|||++++  +
T Consensus       204 lwdi~~~~~~~~~------------------~~p~~~~~~h~-~~VeDV~~h~~h~~lF~sv~dd~-~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  204 LWDINAESKEDKV------------------VDPKTIFSGHE-DVVEDVAWHPLHEDLFGSVGDDG-KLMIWDTRSNTSK  263 (422)
T ss_pred             EEeccccccCCcc------------------ccceEEeecCC-cceehhhccccchhhheeecCCC-eEEEEEcCCCCCC
Confidence            9999854432111                  12344678886 8999999999 566778888887 9999999953  3


Q ss_pred             ce-eeecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          246 GT-PIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       246 ~~-~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      .. ....|.+.+.|++|+|- +..||+|+.|++|.+||+|+-+.  ..+.+|...|.++.|+|....++++++.++++.+
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            33 35678899999999995 55669999999999999997655  6688999999999999999888877778888888


Q ss_pred             EEeecCCCCcC-CCcCCCCcccccccccCC-ceeEEEECCCCCEEE-EEecCCCccccceEEEEEcCC
Q 013347          322 IHFASKPPSLD-AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       322 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      |++........ ....+...+.+..-.||. .|..+.|+|+..+++ +.+.|      +.++||....
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD------N~LqIW~~s~  405 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED------NILQIWQMAE  405 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC------ceEEEeeccc
Confidence            88754322111 000111122334445777 999999999987655 45555      9999999873

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=6.6e-26  Score=199.08  Aligned_cols=237  Identities=12%  Similarity=0.149  Sum_probs=196.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      -|+++.+.|||+.|++|+.-.++.|||+......+........-.+++++.+||.+..++++.||.|.|||+...     
T Consensus       467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-----  541 (705)
T KOG0639|consen  467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-----  541 (705)
T ss_pred             ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-----
Confidence            389999999999999999999999999997643333322344457889999999888899999999999999822     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                                          .+++.|++|. ..+.|+.+++||..|.+|+-|+ +|+.||++++.........+.|.++.
T Consensus       542 --------------------~~VrqfqGht-DGascIdis~dGtklWTGGlDn-tvRcWDlregrqlqqhdF~SQIfSLg  599 (705)
T KOG0639|consen  542 --------------------TLVRQFQGHT-DGASCIDISKDGTKLWTGGLDN-TVRCWDLREGRQLQQHDFSSQIFSLG  599 (705)
T ss_pred             --------------------eeeecccCCC-CCceeEEecCCCceeecCCCcc-ceeehhhhhhhhhhhhhhhhhheecc
Confidence                                4678899997 8999999999999999999998 99999999988777777788999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  340 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      .+|++.+++.|-+++.+.+......+...+..|.+.|.++.|.+.|+++++.    +++..+..|..+          -+
T Consensus       600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt----GkDnlLnawrtP----------yG  665 (705)
T KOG0639|consen  600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST----GKDNLLNAWRTP----------YG  665 (705)
T ss_pred             cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec----CchhhhhhccCc----------cc
Confidence            9999999999999999999988887777788899999999999999999966    333444444322          23


Q ss_pred             ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          341 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       341 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      ..+...+....|.++.+|-|.+||++|+.|      ....||.+
T Consensus       666 asiFqskE~SsVlsCDIS~ddkyIVTGSGd------kkATVYeV  703 (705)
T KOG0639|consen  666 ASIFQSKESSSVLSCDISFDDKYIVTGSGD------KKATVYEV  703 (705)
T ss_pred             cceeeccccCcceeeeeccCceEEEecCCC------cceEEEEE
Confidence            334444444589999999999999999988      67777764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3e-25  Score=177.93  Aligned_cols=244  Identities=16%  Similarity=0.270  Sum_probs=186.6

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      |.++...--|++||+++.|++|+|+.+..+++ .......+|.++|+.++|..  .|..|++++.||.|.||.-+     
T Consensus        14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~-----   88 (299)
T KOG1332|consen   14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE-----   88 (299)
T ss_pred             hhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC-----
Confidence            66677777899999999999999999998754 23333369999999999954  55667777789999999987     


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCC-C---ceeeecC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQG-L---GTPIRRG  252 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~-~---~~~~~~~  252 (444)
                                        +++|........|. ..|++++|.|  -|-.|++++.|| .|.|.+.+.. .   ......|
T Consensus        89 ------------------~g~w~k~~e~~~h~-~SVNsV~wapheygl~LacasSDG-~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   89 ------------------NGRWTKAYEHAAHS-ASVNSVAWAPHEYGLLLACASSDG-KVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             ------------------CCchhhhhhhhhhc-ccceeecccccccceEEEEeeCCC-cEEEEEEcCCCCccchhhhhcc
Confidence                              33555566677775 8999999998  466789999998 9999988765 2   1224568


Q ss_pred             CCCeEEEEEecC---C-----------CeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCC----CEEEE
Q 013347          253 FGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMILL  311 (444)
Q Consensus       253 ~~~v~~~~~sp~---~-----------~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g----~~l~~  311 (444)
                      .-.|.+++|.|-   |           +.|++|+.|+.|+||+...++-   ..+.+|...|+.++|.|.-    ..|+ 
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA-  227 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA-  227 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE-
Confidence            889999999985   4           5699999999999999988643   4588999999999999965    2444 


Q ss_pred             EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      +++.++++.+|......       .+.+...+..+  ...++.++||+.|..|++++.|      +.+.+|.-..
T Consensus       228 S~SqDg~viIwt~~~e~-------e~wk~tll~~f--~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~  287 (299)
T KOG1332|consen  228 SCSQDGTVIIWTKDEEY-------EPWKKTLLEEF--PDVVWRVSWSLSGNILAVSGGD------NKVTLWKENV  287 (299)
T ss_pred             EecCCCcEEEEEecCcc-------CcccccccccC--CcceEEEEEeccccEEEEecCC------cEEEEEEeCC
Confidence            56677777777653211       01112222221  1279999999999999999888      8999998653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=3.7e-24  Score=201.99  Aligned_cols=271  Identities=17%  Similarity=0.209  Sum_probs=218.1

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ...+.+..|+  ..++++++.+.+|++|+..+ +........+|.+.|+++++..-+..+++++.|.++++||..+    
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s----  280 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST----  280 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC----
Confidence            3467888888  66788899999999999998 5555553479999999999987557888888899999999883    


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~  257 (444)
                           +                .+...+.+|. ..|.++...  ...+++|+.|. +|++|++.++..+.+.. |.+.|.
T Consensus       281 -----g----------------~C~~~l~gh~-stv~~~~~~--~~~~~sgs~D~-tVkVW~v~n~~~l~l~~~h~~~V~  335 (537)
T KOG0274|consen  281 -----G----------------ECTHSLQGHT-SSVRCLTID--PFLLVSGSRDN-TVKVWDVTNGACLNLLRGHTGPVN  335 (537)
T ss_pred             -----C----------------cEEEEecCCC-ceEEEEEcc--CceEeeccCCc-eEEEEeccCcceEEEeccccccEE
Confidence                 3                4777888886 788888764  45788889998 99999999999988776 999999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      ++..+  +.++++|+.|++|++||+.++++ ..+.+|...|+++.+.+. ..++.+ +-+..+..|++.           
T Consensus       336 ~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg-s~D~~IkvWdl~-----------  400 (537)
T KOG0274|consen  336 CVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSG-SLDTTIKVWDLR-----------  400 (537)
T ss_pred             EEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEee-eeccceEeecCC-----------
Confidence            99997  88999999999999999999988 668899999999988776 566655 333555555543           


Q ss_pred             CCCc-ccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-CCCCCcceeeeeC
Q 013347          337 PVDL-PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFH  413 (444)
Q Consensus       337 ~~~~-~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~i~~v~~spd  413 (444)
                        .. .++.++.+|. -+..+  ...+++|++++.|      ++|++||..+++..     +.+.+ |...|..+++.  
T Consensus       401 --~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD------~~Ik~WD~~~~~~~-----~~~~~~~~~~v~~l~~~--  463 (537)
T KOG0274|consen  401 --TKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSAD------GTIKLWDAEEGECL-----RTLEGRHVGGVSALALG--  463 (537)
T ss_pred             --chhhhhhhhcCCccccccc--ccccceeEecccc------ccEEEeecccCcee-----eeeccCCcccEEEeecC--
Confidence              23 6888999998 45444  3567899999998      99999999988776     55666 56777777765  


Q ss_pred             CCCCCCceEEEEeccceeeeeeeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                           ...+.+..++|.+.+|++.-
T Consensus       464 -----~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  464 -----KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             -----cceEEEEecCCeeEEEeccc
Confidence                 22467778999999997753

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=9e-26  Score=188.05  Aligned_cols=235  Identities=14%  Similarity=0.170  Sum_probs=196.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|.|+.||.|...+|+|+.||.|+||.+.+ +.....+...|...|+++.||.|+.++++++.|.+++|--+..+     
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-----  338 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIET-GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-----  338 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEec-chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-----
Confidence            599999999999999999999999999999 77777777799999999999999999999999999999988833     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---CCCCeE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLS  257 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~v~  257 (444)
                                          ++++.+++|. ..|+...|++||.++++++.|| +|++|+.++.++...+.   ...+|.
T Consensus       339 --------------------K~LKEfrGHs-Syvn~a~ft~dG~~iisaSsDg-tvkvW~~KtteC~~Tfk~~~~d~~vn  396 (508)
T KOG0275|consen  339 --------------------KCLKEFRGHS-SYVNEATFTDDGHHIISASSDG-TVKVWHGKTTECLSTFKPLGTDYPVN  396 (508)
T ss_pred             --------------------hhHHHhcCcc-ccccceEEcCCCCeEEEecCCc-cEEEecCcchhhhhhccCCCCcccce
Confidence                                3556788996 8999999999999999999998 99999999998876443   345788


Q ss_pred             EEEEec-CCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          258 ILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       258 ~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      ++..-| +...++++...++|++.++...-...+.   ...+..-+...+|.|.++++. +++..++.+.+-        
T Consensus       397 sv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci-gED~vlYCF~~~--------  467 (508)
T KOG0275|consen  397 SVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI-GEDGVLYCFSVL--------  467 (508)
T ss_pred             eEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE-ccCcEEEEEEee--------
Confidence            887777 4567888989999999999865555444   234556778899999999865 555777777764        


Q ss_pred             CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                           .+..-+++.-|. .+..++-+|..+.||+-+.|      |.+++|.
T Consensus       468 -----sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED------gllKLWk  507 (508)
T KOG0275|consen  468 -----SGKLERTLPVHEKDVIGLTHHPHQNLLASYSED------GLLKLWK  507 (508)
T ss_pred             -----cCceeeeeecccccccccccCcccchhhhhccc------chhhhcC
Confidence                 344555666676 78889999999999999998      9999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.9e-24  Score=188.41  Aligned_cols=236  Identities=14%  Similarity=0.151  Sum_probs=189.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~  179 (444)
                      .|.++.|-.||++||.|...|.|+|||..+  +.......+|+.+|..+.|+|+++.+++.++| +.+++||+.+.    
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----  143 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----  143 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----
Confidence            599999999999999999999999999654  23333336999999999999998888777775 78889999832    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~  257 (444)
                                           .....+.+|. ..|.|.+|+|. +..+++|+.|| .|++||++.. ..+....|..+|.
T Consensus       144 ---------------------~v~~~l~~ht-DYVR~g~~~~~~~hivvtGsYDg-~vrl~DtR~~~~~v~elnhg~pVe  200 (487)
T KOG0310|consen  144 ---------------------YVQAELSGHT-DYVRCGDISPANDHIVVTGSYDG-KVRLWDTRSLTSRVVELNHGCPVE  200 (487)
T ss_pred             ---------------------EEEEEecCCc-ceeEeeccccCCCeEEEecCCCc-eEEEEEeccCCceeEEecCCCcee
Confidence                                 1234678886 89999999995 55789999998 9999999987 5556778999999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce-ec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .+.+-|.|..+++++ ...|++||+-+|.. .. ...|...|+|+.+..++..|+++ +-|+.+..+++.          
T Consensus       201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~-sLD~~VKVfd~t----------  268 (487)
T KOG0310|consen  201 SVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG-SLDRHVKVFDTT----------  268 (487)
T ss_pred             eEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec-ccccceEEEEcc----------
Confidence            999999999999887 46799999996654 33 34599999999999999988866 344556666532          


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                         +.+.+..+.-..+|.+++.+|+++.++.|-.+      |.+.+-+...
T Consensus       269 ---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn------Glv~~rr~~~  310 (487)
T KOG0310|consen  269 ---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN------GLVSIRRREV  310 (487)
T ss_pred             ---ceEEEEeeecccceeeEEecCCCceEEEeccc------ceeeeehhhc
Confidence               34556666666699999999999999999988      7777665443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=180.58  Aligned_cols=259  Identities=14%  Similarity=0.160  Sum_probs=190.7

Q ss_pred             cccCcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCe
Q 013347           67 REEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV  146 (444)
Q Consensus        67 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v  146 (444)
                      ...+..+.++|-.|..+                  |+++.|+|....|++|+.|++|++||..........-......+|
T Consensus       158 ~qa~hPvIRTlYDH~de------------------vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~v  219 (430)
T KOG0640|consen  158 TQARHPVIRTLYDHVDE------------------VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPV  219 (430)
T ss_pred             cccCCceEeehhhccCc------------------ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhcccee
Confidence            33344555666666555                  999999999999999999999999999864211111112345689


Q ss_pred             EEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347          147 KVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  226 (444)
Q Consensus       147 ~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  226 (444)
                      .+++|+|.|..++++..-.++++||+++-+.-...                      ..-..| .+.|+++.+++.|++.
T Consensus       220 rsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa----------------------nPd~qh-t~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  220 RSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA----------------------NPDDQH-TGAITQVRYSSTGSLY  276 (430)
T ss_pred             eeEeecCCCceEEEecCCCceeEEeccceeEeeec----------------------Cccccc-ccceeEEEecCCccEE
Confidence            99999999877777777799999999843221110                      112345 4899999999999999


Q ss_pred             EEEeeCCCeEEEEEcCCCCceeeec--C-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccC-----CCce
Q 013347          227 ASASYESSSFTIWDVAQGLGTPIRR--G-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSST-----SGFV  297 (444)
Q Consensus       227 ~~~~~d~~~i~iwd~~~~~~~~~~~--~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~-----~~~v  297 (444)
                      ++++.|| .|++||--+++++...+  | ...|.+..|..+|+++++.+.|..+++|.+.++.+. ...+.     ..--
T Consensus       277 vTaSkDG-~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~r  355 (430)
T KOG0640|consen  277 VTASKDG-AIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHR  355 (430)
T ss_pred             EEeccCC-cEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhh
Confidence            9999998 99999998888876443  4 467999999999999999999999999999999873 33322     1123


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      +...|+....+++.-......+..|+-++.            .+...---+|+ .+..+.-||.+.-+++|+.|      
T Consensus       356 tqAvFNhtEdyVl~pDEas~slcsWdaRta------------dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD------  417 (430)
T KOG0640|consen  356 TQAVFNHTEDYVLFPDEASNSLCSWDARTA------------DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD------  417 (430)
T ss_pred             hhhhhcCccceEEccccccCceeeccccch------------hhhhhcccCCCCCceEEEeCCCCCceeeeccc------
Confidence            456788888888765554455556654321            11111123666 89999999999999999998      


Q ss_pred             ceEEEEEcC
Q 013347          377 GLIAIYDAR  385 (444)
Q Consensus       377 ~~i~vwd~~  385 (444)
                      -.+++|--+
T Consensus       418 ~raRFWyrr  426 (430)
T KOG0640|consen  418 FRARFWYRR  426 (430)
T ss_pred             ceeeeeeec
Confidence            899999654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.3e-23  Score=173.55  Aligned_cols=241  Identities=15%  Similarity=0.214  Sum_probs=184.8

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      ...+.|.++.|+++|..+++++.|.+++|||...++....+..                         ++ -.+..++|.
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------------------------kk-yG~~~~~Ft   65 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------------------------KK-YGVDLACFT   65 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-------------------------cc-ccccEEEEe
Confidence            4577899999999999999989999999999986655444433                         22 578888887


Q ss_pred             cCCCeEEEEee--CCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce
Q 013347          221 PDGRYLASASY--ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV  297 (444)
Q Consensus       221 p~~~~l~~~~~--d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v  297 (444)
                      .....++.++.  |. +|+..++.+++.++ ..+|...|.+++.+|-+..+++++.|++|++||++..+++-+..... -
T Consensus        66 h~~~~~i~sStk~d~-tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~  143 (311)
T KOG1446|consen   66 HHSNTVIHSSTKEDD-TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-R  143 (311)
T ss_pred             cCCceEEEccCCCCC-ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-C
Confidence            76666666665  65 99999999999887 55788999999999999999999999999999999887754442222 2


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc----CCceeEEEECCCCCEEEEEecCCCc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG----SQGIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ..++|+|+|-++|++.... .+..++++.-           ...+..++.-    +...+.+.|||||++|+.+...   
T Consensus       144 pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~-----------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---  208 (311)
T KOG1446|consen  144 PIAAFDPEGLIFALANGSE-LIKLYDLRSF-----------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---  208 (311)
T ss_pred             cceeECCCCcEEEEecCCC-eEEEEEeccc-----------CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---
Confidence            4589999999988776553 5666665432           1222222221    2278999999999999998887   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeCCCC---CCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRGPGD---NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                         +.+++.|.-+|.+.     ..+.++..   -.....|+|||+|     +..|.+||+|.+|.+.
T Consensus       209 ---s~~~~lDAf~G~~~-----~tfs~~~~~~~~~~~a~ftPds~F-----vl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  209 ---SFIYLLDAFDGTVK-----STFSGYPNAGNLPLSATFTPDSKF-----VLSGSDDGTIHVWNLE  262 (311)
T ss_pred             ---CcEEEEEccCCcEe-----eeEeeccCCCCcceeEEECCCCcE-----EEEecCCCcEEEEEcC
Confidence               89999999988765     33443322   2357789999998     7788999999999874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-23  Score=163.86  Aligned_cols=272  Identities=19%  Similarity=0.184  Sum_probs=199.6

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCC----------CCc---eeEEecCCCCCeEEEEEeeCCCeEEEEecCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------GKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCKG  165 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----------~~~---~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg  165 (444)
                      +..|++++|+|.|.+.|+|+...+++|.....-          ...   .+...+.|.+.|+|.+|+|+|..+++++.|.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            346999999999999999999999998755321          111   1222357899999999999987777777889


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----CCCeEEEEeeCCCeEEEEEc
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASYESSSFTIWDV  241 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~~i~iwd~  241 (444)
                      +|++..++.......   +                 ..-.+.-| ++.|..++|-.    .+..|++++.....|++-|.
T Consensus       112 ~ik~l~fn~dt~~~~---g-----------------~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen  112 TIKVLPFNADTCNAT---G-----------------HDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             eEEEEeccccccccc---C-----------------cceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            999987763322111   1                 01134455 48999999954    45677777654446777777


Q ss_pred             CCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---c-----CCCceeEEEECCCCCEEEEE
Q 013347          242 AQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S-----TSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       242 ~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~-----~~~~v~~~~~sp~g~~l~~~  312 (444)
                      ..++... +.+|.+.|.++ ++-++-.+++|+.|.+|++||++-.......   .     ..+.|.+++..|.|++++++
T Consensus       171 ~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg  249 (350)
T KOG0641|consen  171 GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG  249 (350)
T ss_pred             CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence            7776554 66788888776 3446889999999999999999977653221   1     23568999999999999976


Q ss_pred             EcCC-ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          313 FAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       313 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      -.+. ..++.++               ....++.+..|. .|.++.|||...||.+++.|      ..|++=|++.. +.
T Consensus       250 ~~dssc~lydir---------------g~r~iq~f~phsadir~vrfsp~a~yllt~syd------~~ikltdlqgd-la  307 (350)
T KOG0641|consen  250 HADSSCMLYDIR---------------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD------MKIKLTDLQGD-LA  307 (350)
T ss_pred             cCCCceEEEEee---------------CCceeeeeCCCccceeEEEeCCCceEEEEeccc------ceEEEeecccc-hh
Confidence            5432 2344443               466788888888 99999999999999999988      99999999853 32


Q ss_pred             EEEEeeeeeCCCCCCcceeeeeCC
Q 013347          391 SLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       391 ~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                      ...++..+..|.+.+..+.|+|..
T Consensus       308 ~el~~~vv~ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  308 HELPIMVVAEHKDKAIQCRWHPQD  331 (350)
T ss_pred             hcCceEEEEeccCceEEEEecCcc
Confidence            344455667788888889999863

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=2.9e-23  Score=182.66  Aligned_cols=304  Identities=13%  Similarity=0.163  Sum_probs=214.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |.|++|.++|+ +++|.++|.|.||+..+ .+..... ..|.+.|.++....+ +.|++++.|..|..||-+..+....-
T Consensus       249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~-~~~~k~~-~aH~ggv~~L~~lr~-GtllSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  249 VLCVTFLENGD-VITGDSGGNILIWSKGT-NRISKQV-HAHDGGVFSLCMLRD-GTLLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             EEEEEEcCCCC-EEeecCCceEEEEeCCC-ceEEeEe-eecCCceEEEEEecC-ccEeecCccceEEecccccccccccc
Confidence            99999999998 55899999999999976 3333444 389999999999999 68888888999999994422211111


Q ss_pred             eccccccccccccCC-------CCceEE--------EEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc
Q 013347          182 RSGAASFLGALSRGP-------GTRWTL--------VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  246 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~  246 (444)
                      ....+.++..+..+.       .....+        .....+|. .....++.+|+...+++++.|+ .+++|+  ..+.
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~-delwgla~hps~~q~~T~gqdk-~v~lW~--~~k~  400 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG-DELWGLATHPSKNQLLTCGQDK-HVRLWN--DHKL  400 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc-cceeeEEcCCChhheeeccCcc-eEEEcc--CCce
Confidence            112222222222221       111122        12345665 6889999999999999999998 999999  4444


Q ss_pred             eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          247 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       247 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      ........++.++.|+|.| .++.|...|...+.|.++.....+.....++++++|+|+|.++|++ +.+..++.+++..
T Consensus       401 ~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  401 EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSA  478 (626)
T ss_pred             eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe-cCCCeEEEEEECC
Confidence            4444556889999999999 8999999999999999997776665558899999999999999977 4557788888754


Q ss_pred             CCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE------E-EEeee--
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS------L-SLIGF--  397 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~------~-~~~~~--  397 (444)
                      ...         ....+....+ .+|+.+.||+|+++|.+-+.|      -.|..|....-+...      + +..+.  
T Consensus       479 ~g~---------~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d------~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG  542 (626)
T KOG2106|consen  479 NGR---------KYSRVGKCSG-SPITHLDWSSDSQFLVSNSGD------YEILYWKPSECKQITSVKDVKWATYTCTLG  542 (626)
T ss_pred             CCc---------EEEEeeeecC-ceeEEeeecCCCceEEeccCc------eEEEEEccccCcccceecceeeeeeEEEEE
Confidence            210         1111222223 489999999999999998887      789999543222110      0 00011  


Q ss_pred             ----eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          398 ----IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       398 ----~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                          ...++..|..++-|.+.+     ++++|.+.|.|.+|.-
T Consensus       543 F~v~g~s~~t~i~a~~rs~~~~-----~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  543 FEVFGGSDGTDINAVARSHCEK-----LLASGDDFGKVHLFSY  580 (626)
T ss_pred             EEEecccCCchHHHhhhhhhhh-----hhhccccCceEEEEcc
Confidence                112445566666666555     4899999999998864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=3.3e-24  Score=205.26  Aligned_cols=242  Identities=20%  Similarity=0.345  Sum_probs=185.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccC------CCC----------ceeEEecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED------SGK----------DACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~------~~~----------~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d  164 (444)
                      .|.|+.|+|||++||+|+.|+.|.||....      .+.          .......+|...|..++|+|++..+++++.|
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D  150 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD  150 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc
Confidence            499999999999999999999999999883      011          1222335899999999999998889999999


Q ss_pred             CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  244 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~  244 (444)
                      ++|.||+..                         .+.+...+++|+ ..|-.+.|.|-|++||+-+.|+ +|++|++.+-
T Consensus       151 nsViiwn~~-------------------------tF~~~~vl~~H~-s~VKGvs~DP~Gky~ASqsdDr-tikvwrt~dw  203 (942)
T KOG0973|consen  151 NSVIIWNAK-------------------------TFELLKVLRGHQ-SLVKGVSWDPIGKYFASQSDDR-TLKVWRTSDW  203 (942)
T ss_pred             ceEEEEccc-------------------------cceeeeeeeccc-ccccceEECCccCeeeeecCCc-eEEEEEcccc
Confidence            999999988                         234677889997 8999999999999999999998 9999997664


Q ss_pred             Ccee-eecC------CCCeEEEEEecCCCeEEEEec----CCcEEEEECCCCce-eccccCCCceeEEEECCC-------
Q 013347          245 LGTP-IRRG------FGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-------  305 (444)
Q Consensus       245 ~~~~-~~~~------~~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~-------  305 (444)
                      ...+ +..+      ......+.|||||++|++...    -.++.|.+-.+.+. ..+.+|.+++.++.|+|.       
T Consensus       204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~  283 (942)
T KOG0973|consen  204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK  283 (942)
T ss_pred             eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence            4433 2221      235778999999999987643    34788999888876 678899999999999972       


Q ss_pred             -C-------CE-EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-C-ceeEEEECCCCCEEEEEecCCCcc
Q 013347          306 -G-------RM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDI  374 (444)
Q Consensus       306 -g-------~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~spdg~~l~~~~~d~~~~  374 (444)
                       |       .+ +++.++.|..+-+|....             .+++.....- + .|.+++|+|||-.|+++|.|    
T Consensus       284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~-------------~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~D----  346 (942)
T KOG0973|consen  284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTAL-------------PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLD----  346 (942)
T ss_pred             cCCccCCCcceEEEEEecCCccEEEEecCC-------------CCchhhhhhhhcCceeeeeEcCCCCeEEEEecC----
Confidence             1       11 454555554444444311             1222222211 1 79999999999999999998    


Q ss_pred             ccceEEEEEcCCCC
Q 013347          375 YKGLIAIYDARRTP  388 (444)
Q Consensus       375 ~d~~i~vwd~~~~~  388 (444)
                        |+|.++..+.++
T Consensus       347 --GtV~~i~Fee~E  358 (942)
T KOG0973|consen  347 --GTVALIHFEEKE  358 (942)
T ss_pred             --CeEEEEEcchHH
Confidence              999999987543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=9.1e-23  Score=185.04  Aligned_cols=267  Identities=13%  Similarity=0.061  Sum_probs=185.9

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCcceeeccccccc
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ++.+++++.|+.+++||+.+ ++....+. .+ ..+.+++|+|+++.++++ +.++.|++||......            
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t-~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------------   65 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTAT-LEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------------   65 (300)
T ss_pred             CcEEEEecCCCEEEEEECCC-CceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE------------
Confidence            35678889999999999987 44444442 33 346789999998777555 4579999999874322            


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF  268 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l  268 (444)
                                   ...+..+  ..+..++|+|+++.+++++ .++ .+++||+++.+..........+.+++|+|+++++
T Consensus        66 -------------~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~-~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        66 -------------IGTLPSG--PDPELFALHPNGKILYIANEDDN-LVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIV  129 (300)
T ss_pred             -------------EEeccCC--CCccEEEECCCCCEEEEEcCCCC-eEEEEECCCCeEEeEeeCCCCcceEEECCCCCEE
Confidence                         1222222  2456789999999887665 466 9999999987665544444567889999999999


Q ss_pred             EEEecCC-cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          269 FAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       269 ~~~~~d~-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      +++..++ .+.+||.++++............+++|+|+++++++++..++.+..|++...             ..+..+.
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-------------~~~~~~~  196 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-------------KVIKKIT  196 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-------------eeeeeee
Confidence            8888765 5677899887664322233456789999999998877666677777776432             1111111


Q ss_pred             c--------CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCC
Q 013347          348 G--------SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  419 (444)
Q Consensus       348 ~--------~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~  419 (444)
                      .        ......++|+|+|++++++..+.     +.+.+||+++++...     .+ .+...+.+++|+|+|++   
T Consensus       197 ~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~~~-----~~-~~~~~~~~~~~~~~g~~---  262 (300)
T TIGR03866       197 FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEVLD-----YL-LVGQRVWQLAFTPDEKY---  262 (300)
T ss_pred             ecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcEEE-----EE-EeCCCcceEEECCCCCE---
Confidence            0        11345688999999876654332     689999999877652     12 13446889999999986   


Q ss_pred             ceEEEE-eccceeeeeeee
Q 013347          420 PLLSVC-WSSGFCCTYPLI  437 (444)
Q Consensus       420 ~~l~~~-~~~g~i~~~~~~  437 (444)
                        |.++ -.+|.|.+|++.
T Consensus       263 --l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       263 --LLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             --EEEEcCCCCeEEEEECC
Confidence              4444 458999999875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=6.4e-23  Score=190.76  Aligned_cols=317  Identities=14%  Similarity=0.178  Sum_probs=227.7

Q ss_pred             CcccccccccccccccccccCCCCccCcc----ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC-CC
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLP----EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-QR  144 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~  144 (444)
                      ..-+-.++.|...+.+..+.......+..    ...|+++.=+|-=..+|.|..+|+|.|+++.. ++....+  .| .+
T Consensus       169 ~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sF--k~d~g  245 (910)
T KOG1539|consen  169 STYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSF--KQDWG  245 (910)
T ss_pred             hhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEccc-CcEEEEE--Ecccc
Confidence            34444455555444444444433222221    13699999999999999999999999999998 5555554  44 48


Q ss_pred             CeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeecccccccc------------------c--------------
Q 013347          145 DVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLG------------------A--------------  191 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~------------------~--------------  191 (444)
                      .|++++|..||..+++++.. |.+.+||++..+....+.....+.+.                  +              
T Consensus       246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR  325 (910)
T KOG1539|consen  246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR  325 (910)
T ss_pred             ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcch
Confidence            99999999999998888875 99999999844333222211100000                  0              


Q ss_pred             --------------c-----------ccCCCC------------------------------------------------
Q 013347          192 --------------L-----------SRGPGT------------------------------------------------  198 (444)
Q Consensus       192 --------------~-----------~~~~~~------------------------------------------------  198 (444)
                                    +           +.+.+.                                                
T Consensus       326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~  405 (910)
T KOG1539|consen  326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN  405 (910)
T ss_pred             heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence                          0           000000                                                


Q ss_pred             ----ceE-------------EE---------EEeecc----CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347          199 ----RWT-------------LV---------DFLRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  248 (444)
Q Consensus       199 ----~~~-------------~~---------~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~  248 (444)
                          .|.             .+         ..+...    .+..+++++.++.|++.+.|...| .|-+|++++|....
T Consensus       406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G-~Id~fNmQSGi~r~  484 (910)
T KOG1539|consen  406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG-TIDRFNMQSGIHRK  484 (910)
T ss_pred             chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC-eEEEEEcccCeeec
Confidence                000             00         001111    125688999999999999999887 99999999997665


Q ss_pred             ee----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          249 IR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       249 ~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      ..    .|+++|+.++...-++.+++++.+|.+.+||..+........-...+.++.++.....++.++++ -.+..++.
T Consensus       485 sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~vvD~  563 (910)
T KOG1539|consen  485 SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRVVDV  563 (910)
T ss_pred             ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEEEEc
Confidence            44    68899999999988999999999999999999988765444556678888888888877766543 34455543


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  403 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  403 (444)
                      -             +...++.+.+|. .|++++|||||++|++++.|      ++|++||+.++.++....+      ..
T Consensus       564 ~-------------t~kvvR~f~gh~nritd~~FS~DgrWlisasmD------~tIr~wDlpt~~lID~~~v------d~  618 (910)
T KOG1539|consen  564 V-------------TRKVVREFWGHGNRITDMTFSPDGRWLISASMD------STIRTWDLPTGTLIDGLLV------DS  618 (910)
T ss_pred             h-------------hhhhhHHhhccccceeeeEeCCCCcEEEEeecC------CcEEEEeccCcceeeeEec------CC
Confidence            2             456788999999 99999999999999999999      9999999999988744332      66


Q ss_pred             CCcceeeeeCCCC
Q 013347          404 NPKPVAFSFHDKF  416 (444)
Q Consensus       404 ~i~~v~~spdg~~  416 (444)
                      +++++.|||+|.|
T Consensus       619 ~~~sls~SPngD~  631 (910)
T KOG1539|consen  619 PCTSLSFSPNGDF  631 (910)
T ss_pred             cceeeEECCCCCE
Confidence            7889999999998

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.4e-23  Score=197.15  Aligned_cols=275  Identities=12%  Similarity=0.166  Sum_probs=200.7

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ..+-+.++|.|+|++|++++.||.|++|+.......+..+. .+...|.+++-..  .+|++++.+++|.+|.+......
T Consensus        13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             cCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeecc--cceEEeeccceEEEeeCCCCCcc
Confidence            34588999999999999999999999999987534444442 3777788776544  58999999999999999844332


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~  257 (444)
                      ..+..                      +    .-++.+++|+-+|++++.|+.|- .|++-++...... .+.+|.++|.
T Consensus        90 ~iL~R----------------------f----tlp~r~~~v~g~g~~iaagsdD~-~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   90 TILAR----------------------F----TLPIRDLAVSGSGKMIAAGSDDT-AVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceeee----------------------e----eccceEEEEecCCcEEEeecCce-eEEEEeccccchheeecccCCcee
Confidence            22211                      1    25789999999999999999997 9999999876544 5788999999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      ++.|+|++++||+.+.||.|++||+.++.+.. +.        .....+..++|+|+|..+++.+.+ ..+..++..   
T Consensus       143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d-~~Vkvy~r~---  218 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD-NTVKVYSRK---  218 (933)
T ss_pred             eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC-CeEEEEccC---
Confidence            99999999999999999999999999887632 22        113456889999996555544322 333443321   


Q ss_pred             CCcCCCcCCCCccccccccc--CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347          329 PSLDAHLLPVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  405 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i  405 (444)
                                .+.....+..  +. .+..+.|+|+|+|||+++.+      |.|.|||.++.+.         ......|
T Consensus       219 ----------~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~------g~I~vWnv~t~~~---------~~~~~~V  273 (933)
T KOG1274|consen  219 ----------GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD------GQILVWNVDTHER---------HEFKRAV  273 (933)
T ss_pred             ----------CceeheeecccccccceEEEEEcCCCcEEeeeccC------CcEEEEecccchh---------cccccee
Confidence                      2222333332  22 58999999999999999998      9999999997221         1224568


Q ss_pred             cceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          406 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       406 ~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .+++|-|++.-     +++-...|+..+++-+
T Consensus       274 c~~aw~p~~n~-----it~~~~~g~~~~~~~i  300 (933)
T KOG1274|consen  274 CCEAWKPNANA-----ITLITALGTLGVSPAI  300 (933)
T ss_pred             EEEecCCCCCe-----eEEEeeccccccChhh
Confidence            89999998654     3444444555544433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=9.5e-24  Score=192.49  Aligned_cols=281  Identities=15%  Similarity=0.172  Sum_probs=218.3

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE-EE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LE  150 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-l~  150 (444)
                      .+...|.||...                  |+.++..+. ..+++++.||++++|+-..+.-.......+|.+-|.. ++
T Consensus         5 ~ls~~l~gH~~D------------------Vr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen    5 KLSHELEGHKSD------------------VRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSIC   65 (745)
T ss_pred             eeEEEeccCccc------------------hheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccce
Confidence            455667788654                  666665554 4788899999999999876433332333467776666 77


Q ss_pred             Eee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347          151 WRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA  229 (444)
Q Consensus       151 ~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  229 (444)
                      +-+ ++.++++++.|.+|.+|......                         ....+.+|. ..|+++....++. +++|
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~-------------------------P~~~LkgH~-snVC~ls~~~~~~-~iSg  118 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAE-------------------------PLYTLKGHK-SNVCSLSIGEDGT-LISG  118 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCC-------------------------chhhhhccc-cceeeeecCCcCc-eEec
Confidence            764 54679999999999999987332                         344678886 8999999888887 9999


Q ss_pred             eeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEE
Q 013347          230 SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI  309 (444)
Q Consensus       230 ~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l  309 (444)
                      |.|. ++++|....-. ..+.+|+..|++++.-|++ .+++|+.|.+|++|.-. ...+.+.+|...|+.+++-+++.++
T Consensus       119 SWD~-TakvW~~~~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~fl  194 (745)
T KOG0301|consen  119 SWDS-TAKVWRIGELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFL  194 (745)
T ss_pred             cccc-ceEEecchhhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeE
Confidence            9998 99999865432 2378899999999999988 78999999999999862 2347788999999999999987765


Q ss_pred             EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                        ++++++.+..|++              ++..+....+|. -|.+++..++++.++++++|      +++++|+...  
T Consensus       195 --ScsNDg~Ir~w~~--------------~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED------rtlriW~~~e--  250 (745)
T KOG0301|consen  195 --SCSNDGSIRLWDL--------------DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED------RTLRIWKKDE--  250 (745)
T ss_pred             --eecCCceEEEEec--------------cCceeeeeeccceEEEEEEecCCCCeEEEecCC------ceEEEeecCc--
Confidence              3455555655554              577888889999 89999988888999999999      9999999872  


Q ss_pred             eEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          389 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       389 ~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .     .+.+.-+...|+++.+-++|.      +.+|.+||+|++|...
T Consensus       251 ~-----~q~I~lPttsiWsa~~L~NgD------Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  251 C-----VQVITLPTTSIWSAKVLLNGD------IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             e-----EEEEecCccceEEEEEeeCCC------EEEeccCceEEEEEec
Confidence            2     234555566788888888876      5788899999999764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=190.07  Aligned_cols=244  Identities=18%  Similarity=0.364  Sum_probs=178.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee------------EEecCCCCCeEEEEEeeCCC-eEEEEecCCcE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC------------ILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGI  167 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v  167 (444)
                      .|++++|++.|..|++.+.....+|+|-+.  ....            ..+++|...+++.+|+|+.+ .+++++.||++
T Consensus       216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG--~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  216 QINSLQYSVTGDQILVVSGSAQAKLLDRDG--FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccceeeecCCCCeEEEEecCcceeEEccCC--ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            599999999999999999999999999874  2222            23468999999999999854 47888889999


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      +||+++..+....+...                    ...+...-.++.++|++||++||+|..|| .|.+|+..+....
T Consensus       294 RiWdv~~~k~q~qVik~--------------------k~~~g~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~  352 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKT--------------------KPAGGKRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVR  352 (641)
T ss_pred             EEEecCCchhheeEEee--------------------ccCCCcccCceeeecCCCcchhhhcccCC-ceeeeecCCcccc
Confidence            99999865543332211                    11222236789999999999999999998 9999998654322


Q ss_pred             e----eecCCC--CeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccc--cCCCceeEEEECCCCCEEEEEEcC--
Q 013347          248 P----IRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS--STSGFVTGATWDPEGRMILLAFAG--  315 (444)
Q Consensus       248 ~----~~~~~~--~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~--~~~~~v~~~~~sp~g~~l~~~~~~--  315 (444)
                      .    ...|..  .|+++.||+||++|++-+.|+++++||++..+.  ....  .....-+.++|||+.++|++|.+-  
T Consensus       353 p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~  432 (641)
T KOG0772|consen  353 PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPN  432 (641)
T ss_pred             cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccC
Confidence            2    234554  899999999999999999999999999998765  2222  233456789999999999987542  


Q ss_pred             CceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      +..-..+.+.+.          .+...+..+.-.+ .|..+.|+|.=+.|.+++.|      |+++||=
T Consensus       433 ~~~~g~L~f~d~----------~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgd------G~~~vyY  485 (641)
T KOG0772|consen  433 GMTAGTLFFFDR----------MTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGD------GTAHVYY  485 (641)
T ss_pred             CCCCceEEEEec----------cceeeEEEecCCCceEEEEeecchhhheeeecCC------CceEEEE
Confidence            112222333221          1333344444334 78899999998888888888      7887763

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=3e-23  Score=196.50  Aligned_cols=222  Identities=12%  Similarity=0.189  Sum_probs=154.4

Q ss_pred             ceEEEEEecC-CCeEEEEECCCeEEEEEccCCCCc------eeEEecCCCCCeEEEEEeeCCCeEE-EEecCCcEEEEec
Q 013347          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKD------ACILTSDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAP  172 (444)
Q Consensus       101 ~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~------~~~~~~~~~~~v~~l~~s~~~~~ll-~~~~dg~v~iw~~  172 (444)
                      .|.+++|+|+ +.+||+|+.|++|+||++.+.+..      ......+|...|.+++|+|++..++ +++.|++|+|||+
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence            5999999997 789999999999999999763221      1112358999999999999977765 5677999999999


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eec
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRR  251 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~  251 (444)
                      .....                         ...+. |. ..|.+++|+|+|++|++++.|+ .|+|||+++++... +..
T Consensus       156 ~tg~~-------------------------~~~i~-~~-~~V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        156 ENEKR-------------------------AFQIN-MP-KKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             CCCcE-------------------------EEEEe-cC-CcEEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEec
Confidence            84322                         11222 22 6799999999999999999998 99999999987654 556


Q ss_pred             CCCCeEE-----EEEecCCCeEEEEecCC----cEEEEECCC-Cceecccc---CCCceeEEEECCCCCEEEEEEcCCce
Q 013347          252 GFGGLSI-----LKWSPTGDYFFAAKFDG----TFYLWETNT-WTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       252 ~~~~v~~-----~~~sp~~~~l~~~~~d~----~v~iwd~~~-~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      |.+.+..     ..|++++.+|++++.|+    .|+|||+++ .+......   +.+.+......++|.++++ +.+++.
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls-GkGD~t  286 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI-GKGDGN  286 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE-EECCCe
Confidence            6655432     33568889999887764    799999995 33333222   2233333333445666654 456677


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE  362 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  362 (444)
                      ++.|++...           ....+..+....++.+++|.|...
T Consensus       287 Ir~~e~~~~-----------~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        287 CRYYQHSLG-----------SIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEEccCC-----------cEEeecccccCCCccceEEccccc
Confidence            777776321           112233333223788899999753

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.9e-22  Score=182.97  Aligned_cols=257  Identities=13%  Similarity=0.115  Sum_probs=178.5

Q ss_pred             eEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~  179 (444)
                      +.+++|+|+|+.+ ++++.++.|++||..+ ++....+. .+ ..+..++|+|+++.+++++. ++.+++||+.....  
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--  107 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLP-SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--  107 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEecc-CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--
Confidence            6679999999976 4566889999999987 44433332 23 33567899999887766654 79999999974221  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  259 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~  259 (444)
                                             +..+..+  ..+.+++|+|+|+++++++.++..+.+||..+++............++
T Consensus       108 -----------------------~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  162 (300)
T TIGR03866       108 -----------------------LAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFA  162 (300)
T ss_pred             -----------------------EeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence                                   1222221  346789999999999998877546778899877655433344556789


Q ss_pred             EEecCCCeEEEE-ecCCcEEEEECCCCceec-cccC-------CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          260 KWSPTGDYFFAA-KFDGTFYLWETNTWTSEP-WSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       260 ~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~-~~~~-------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      +|+|++++|+++ ..++.|++||+++++... +..+       ......++|+|+++.++++...+..+..|++.     
T Consensus       163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~-----  237 (300)
T TIGR03866       163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK-----  237 (300)
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC-----
Confidence            999999988544 468999999999887622 2211       11235688999999877665555556666542     


Q ss_pred             cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                              +.+.+..+..+..+.+++|+|+|++|++++...     +.|++||+++++.+     ..++. ...++.++|
T Consensus       238 --------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-----~~i~v~d~~~~~~~-----~~~~~-~~~~~~~~~  298 (300)
T TIGR03866       238 --------TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-----NDVSVIDVAALKVI-----KSIKV-GRLPWGVVV  298 (300)
T ss_pred             --------CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC-----CeEEEEECCCCcEE-----EEEEc-ccccceeEe
Confidence                    122222222233788999999999998875421     89999999998765     33443 455688887


Q ss_pred             ee
Q 013347          411 SF  412 (444)
Q Consensus       411 sp  412 (444)
                      +|
T Consensus       299 ~~  300 (300)
T TIGR03866       299 RP  300 (300)
T ss_pred             CC
Confidence            75

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.1e-23  Score=169.88  Aligned_cols=287  Identities=14%  Similarity=0.219  Sum_probs=199.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      ..|+.|++.|.+||+|+.+|.|.|||+.+ .....++ .+|..+|++++||+||+.|++++.|..|.+||+..+.....+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccc-cchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            67999999999999999999999999998 4444454 599999999999999999999999999999999855443333


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEEEcCCCCceeeecC-----CCC
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRG-----FGG  255 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~-----~~~  255 (444)
                      .-                           ..+|..+.|+|..+..+.+ -.+. .-.+-++.......+...     ...
T Consensus       104 rf---------------------------~spv~~~q~hp~k~n~~va~~~~~-sp~vi~~s~~~h~~Lp~d~d~dln~s  155 (405)
T KOG1273|consen  104 RF---------------------------DSPVWGAQWHPRKRNKCVATIMEE-SPVVIDFSDPKHSVLPKDDDGDLNSS  155 (405)
T ss_pred             Ec---------------------------cCccceeeeccccCCeEEEEEecC-CcEEEEecCCceeeccCCCccccccc
Confidence            22                           3789999999954443333 3343 555666655433222221     112


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccC-CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~-~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      ..+..|.+.|+++++|...|.+.++|..+-++.. +.-. ...|..+.++..|+.++.-+++ ..++.+.+.+....  +
T Consensus       156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD-RvIR~ye~~di~~~--~  232 (405)
T KOG1273|consen  156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD-RVIRTYEISDIDDE--G  232 (405)
T ss_pred             cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC-ceEEEEehhhhccc--C
Confidence            2344688999999999999999999999987733 2222 3678999999999999876443 45555554322100  0


Q ss_pred             CcCCCCcccccccc---cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC-CCCccee
Q 013347          334 HLLPVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG-DNPKPVA  409 (444)
Q Consensus       334 ~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~i~~v~  409 (444)
                        ......+.+.+.   ....-.++.||.||.|+++++...     ..++||....|.++     +.+.|.. +....+.
T Consensus       233 --r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a-----HaLYIWE~~~GsLV-----KILhG~kgE~l~DV~  300 (405)
T KOG1273|consen  233 --RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA-----HALYIWEKSIGSLV-----KILHGTKGEELLDVN  300 (405)
T ss_pred             --ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc-----eeEEEEecCCccee-----eeecCCchhheeecc
Confidence              000111112221   111446788999999999888553     88999999988776     5566654 5677889


Q ss_pred             eeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          410 FSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      |.|-.-+    +++  ..+|.+++|.....
T Consensus       301 whp~rp~----i~s--i~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  301 WHPVRPI----IAS--IASGVVYIWAVVQV  324 (405)
T ss_pred             cccceee----eee--ccCCceEEEEeecc
Confidence            9885332    233  37899999876543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-22  Score=159.40  Aligned_cols=243  Identities=13%  Similarity=0.207  Sum_probs=178.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC---ceeEEecCCCCCeEEEEEeeC---CCeEEEEecCCcEEEEecCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~---~~~~~~~~~~~~v~~l~~s~~---~~~ll~~~~dg~v~iw~~~~  174 (444)
                      .|.|.+|||+|++||+|+.|.+|++...+....   -......-|.+.|..++|..+   ++.+++++..|..+||-.+-
T Consensus        91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc  170 (350)
T KOG0641|consen   91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC  170 (350)
T ss_pred             cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence            599999999999999999999999987765311   111222479999999999643   45677776655555554431


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---  251 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---  251 (444)
                      +       .+                .-.+.+.+|. +.|.++ ++-+|-.+++|+.|. +|++||++-..+.....   
T Consensus       171 ~-------~g----------------~~~~a~sght-ghilal-yswn~~m~~sgsqdk-tirfwdlrv~~~v~~l~~~~  224 (350)
T KOG0641|consen  171 G-------RG----------------QGFHALSGHT-GHILAL-YSWNGAMFASGSQDK-TIRFWDLRVNSCVNTLDNDF  224 (350)
T ss_pred             C-------CC----------------CcceeecCCc-ccEEEE-EEecCcEEEccCCCc-eEEEEeeeccceeeeccCcc
Confidence            1       11                1234567775 667665 455788999999998 99999999887765433   


Q ss_pred             C-----CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          252 G-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       252 ~-----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      |     .+.|.+++..|.|++|++|..|....+||++.+.. +.+..|...|.++.|+|...+++++. -+..+..-++.
T Consensus       225 ~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~ikltdlq  303 (350)
T KOG0641|consen  225 HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLTDLQ  303 (350)
T ss_pred             cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEeecc
Confidence            1     25789999999999999999999999999999988 66889999999999999999998763 33444444432


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      .   .+.      ..-++.....|. .+..+.|+|..-.+++.+.|      .++.+|-+.
T Consensus       304 g---dla------~el~~~vv~ehkdk~i~~rwh~~d~sfisssad------kt~tlwa~~  349 (350)
T KOG0641|consen  304 G---DLA------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD------KTATLWALN  349 (350)
T ss_pred             c---chh------hcCceEEEEeccCceEEEEecCccceeeeccCc------ceEEEeccC
Confidence            1   110      111233344566 78889999999888888888      899999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=4.6e-24  Score=183.28  Aligned_cols=230  Identities=15%  Similarity=0.184  Sum_probs=184.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|+++.|.++++.++.++.|+.+++|+++. .+....+ .+|.+.|+++.|......+++++.|.+|++||+........
T Consensus       221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             CcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence            699999999999999999999999999997 5666666 48999999999998866688888899999999984333332


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                      +..+                           ..+.+|..+  ...++++..|+ +|++||.++..........+.|+++.
T Consensus       299 ~l~~---------------------------S~cnDI~~~--~~~~~SgH~Dk-kvRfwD~Rs~~~~~sv~~gg~vtSl~  348 (459)
T KOG0288|consen  299 VLPG---------------------------SQCNDIVCS--ISDVISGHFDK-KVRFWDIRSADKTRSVPLGGRVTSLD  348 (459)
T ss_pred             cccc---------------------------ccccceEec--ceeeeeccccc-ceEEEeccCCceeeEeecCcceeeEe
Confidence            2222                           355666655  56788999998 99999999998888777788999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceec-cc----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .++++..+.+++.|.++.+.|+++.+... +.    ......+.+.|||++.|+++|+ .++.+++|.+..         
T Consensus       349 ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~t---------  418 (459)
T KOG0288|consen  349 LSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFT---------  418 (459)
T ss_pred             eccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccC---------
Confidence            99999999999999999999999987732 22    1233478999999999999664 447778887642         


Q ss_pred             CCCCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          336 LPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       336 ~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                          ++....+...  . .|++++|+|.|.+|++++.+      +.+.+|
T Consensus       419 ----gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~------~~v~lW  458 (459)
T KOG0288|consen  419 ----GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ------KAVTLW  458 (459)
T ss_pred             ----ceEEEEeccCCCCcceEEEEEcCCCchhhcccCC------cceEec
Confidence                3333333322  2 69999999999999999887      889998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2e-23  Score=167.47  Aligned_cols=248  Identities=17%  Similarity=0.250  Sum_probs=191.3

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..|.+.|.++...--|.+|+++++|++|+|+.++..+..                      .++.+|++|. ++|..++|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s----------------------~ll~~L~Gh~-GPVwqv~w   64 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS----------------------KLLAELTGHS-GPVWKVAW   64 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc----------------------eeeeEecCCC-CCeeEEee
Confidence            479999999988888899999999999999999844331                      3566799996 99999999


Q ss_pred             cc--CCCeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCC-ce---e
Q 013347          220 GP--DGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTW-TS---E  288 (444)
Q Consensus       220 sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~-~~---~  288 (444)
                      ..  -|.+|++++.|| .|.||.-.+++-.+   ...|...|.+++|.|.  |-.|++++.||.|.|.+.++. ..   +
T Consensus        65 ahPk~G~iLAScsYDg-kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k  143 (299)
T KOG1332|consen   65 AHPKFGTILASCSYDG-KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK  143 (299)
T ss_pred             cccccCcEeeEeecCc-eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence            76  899999999998 99999988885443   3457899999999996  557799999999999988765 22   3


Q ss_pred             ccccCCCceeEEEECCC---C-----------CEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee
Q 013347          289 PWSSTSGFVTGATWDPE---G-----------RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE  353 (444)
Q Consensus       289 ~~~~~~~~v~~~~~sp~---g-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~  353 (444)
                      ....|.-.|++++|.|-   |           +.|+++ +.|..+.+|++.+.           ....-+++.+|. .|+
T Consensus       144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg-GcDn~VkiW~~~~~-----------~w~~e~~l~~H~dwVR  211 (299)
T KOG1332|consen  144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG-GCDNLVKIWKFDSD-----------SWKLERTLEGHKDWVR  211 (299)
T ss_pred             hhhccccccceeeecCcCCCccccccCcccccceeecc-CCccceeeeecCCc-----------chhhhhhhhhcchhhh
Confidence            45589999999999986   4           346654 33345555554322           234445688999 999


Q ss_pred             EEEECCCC----CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccc
Q 013347          354 KIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  429 (444)
Q Consensus       354 ~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g  429 (444)
                      .++|.|.-    .+||+++.|      |++.||..... ....+ ...+..-...++.++||+.|.+     |+++..|.
T Consensus       212 DVAwaP~~gl~~s~iAS~SqD------g~viIwt~~~e-~e~wk-~tll~~f~~~~w~vSWS~sGn~-----LaVs~GdN  278 (299)
T KOG1332|consen  212 DVAWAPSVGLPKSTIASCSQD------GTVIIWTKDEE-YEPWK-KTLLEEFPDVVWRVSWSLSGNI-----LAVSGGDN  278 (299)
T ss_pred             hhhhccccCCCceeeEEecCC------CcEEEEEecCc-cCccc-ccccccCCcceEEEEEeccccE-----EEEecCCc
Confidence            99999964    579999999      99999987632 11111 1123334567899999998875     99999999


Q ss_pred             eeeeeee
Q 013347          430 FCCTYPL  436 (444)
Q Consensus       430 ~i~~~~~  436 (444)
                      .|.+|.-
T Consensus       279 kvtlwke  285 (299)
T KOG1332|consen  279 KVTLWKE  285 (299)
T ss_pred             EEEEEEe
Confidence            9998864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=7.4e-23  Score=178.23  Aligned_cols=259  Identities=14%  Similarity=0.231  Sum_probs=196.7

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..|.+.|..+...|+...++++... +.|.|||........... +              .....-.+.+|+ +.-.+++
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~--------------~~~Pdl~L~gH~-~eg~gls  184 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-G--------------ECRPDLRLKGHE-KEGYGLS  184 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-c--------------cCCCceEEEeec-ccccccc
Confidence            4689999999999998888887665 999999987332221110 0              111223578886 4567799


Q ss_pred             EccC-CCeEEEEeeCCCeEEEEEcCCCCc--------eeeecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCC--c
Q 013347          219 WGPD-GRYLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTW--T  286 (444)
Q Consensus       219 ~sp~-~~~l~~~~~d~~~i~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~--~  286 (444)
                      |++. .-.|++++.|+ +|++||+.....        ..+..|...|..++|++- ...|++++.|+.+.|||++++  +
T Consensus       185 Wn~~~~g~Lls~~~d~-~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~  263 (422)
T KOG0264|consen  185 WNRQQEGTLLSGSDDH-TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK  263 (422)
T ss_pred             cccccceeEeeccCCC-cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence            9984 34678888887 999999986533        235568899999999995 556789999999999999963  3


Q ss_pred             e-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CE
Q 013347          287 S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ER  363 (444)
Q Consensus       287 ~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~  363 (444)
                      . ....+|.+.++|++|+|-+.+++++++.++++..|++++.            ..++.++.+|. .|..+.|||+. ..
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------NKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc------------ccCceeccCCCcceEEEEeCCCCCce
Confidence            3 4466899999999999998888878787888888888763            23677889999 99999999976 67


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeE---------EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLI---------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ||+++.|      +.+.|||+..-...         ...++..-.||...|..+.|+|+..+    +++-.-+|+.+.+|
T Consensus       332 LASSg~D------~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW----~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  332 LASSGTD------RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW----TIASVAEDNILQIW  401 (422)
T ss_pred             eEecccC------CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe----EEEEecCCceEEEe
Confidence            8888877      99999998641111         01223345689999999999998766    56667788999998


Q ss_pred             eee
Q 013347          435 PLI  437 (444)
Q Consensus       435 ~~~  437 (444)
                      .+.
T Consensus       402 ~~s  404 (422)
T KOG0264|consen  402 QMA  404 (422)
T ss_pred             ecc
Confidence            764

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.2e-22  Score=166.36  Aligned_cols=267  Identities=15%  Similarity=0.142  Sum_probs=193.8

Q ss_pred             EEEEECCCeEEEEEccCCC------Cc----eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347          114 VAFISGSTQVIVRDYEDSG------KD----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       114 la~~~~dg~v~iw~~~~~~------~~----~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      |++|++...|.=+++.-..      ..    +......|.++|++++.+  +.++++++.|.+|+|||+.......    
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg----   77 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG----   77 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc----
Confidence            5667777666555554321      00    112235799999999986  3688888899999999998544333    


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC--eEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK  260 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~  260 (444)
                                           .+-.| .+.|+++.|.+.-.  +|++|+.|| .|.+|+...-++.. +..|.+.|+.++
T Consensus        78 ---------------------~ll~H-agsitaL~F~~~~S~shLlS~sdDG-~i~iw~~~~W~~~~slK~H~~~Vt~ls  134 (362)
T KOG0294|consen   78 ---------------------ILLSH-AGSITALKFYPPLSKSHLLSGSDDG-HIIIWRVGSWELLKSLKAHKGQVTDLS  134 (362)
T ss_pred             ---------------------ceecc-ccceEEEEecCCcchhheeeecCCC-cEEEEEcCCeEEeeeecccccccceeE
Confidence                                 23445 48999999998765  899999998 99999998876655 677889999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  340 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      .+|.+++-++.+.|+.+++||+-.|+......-...-+.+.|+|.|.++++...+  .+.++.+.+             .
T Consensus       135 iHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--~i~i~q~d~-------------A  199 (362)
T KOG0294|consen  135 IHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--KIDIYQLDN-------------A  199 (362)
T ss_pred             ecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc--EEEEEeccc-------------H
Confidence            9999999999999999999999988874444334444569999999988877554  344444322             1


Q ss_pred             ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCc
Q 013347          341 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP  420 (444)
Q Consensus       341 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~  420 (444)
                      .....+.....+.++.|- ++.+|++|..+      +.|.+||..+...     ...+.+|..+|.++.+--+.   .+.
T Consensus       200 ~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ds~~~-----~~~~~AH~~RVK~i~~~~~~---~~~  264 (362)
T KOG0294|consen  200 SVFREIENPKRILCATFL-DGSELLVGGDN------EWISLKDTDSDTP-----LTEFLAHENRVKDIASYTNP---EHE  264 (362)
T ss_pred             hHhhhhhccccceeeeec-CCceEEEecCC------ceEEEeccCCCcc-----ceeeecchhheeeeEEEecC---Cce
Confidence            112222222245666665 56788889888      8999999997443     46788999999999853221   123


Q ss_pred             eEEEEeccceeeeeeeeee
Q 013347          421 LLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       421 ~l~~~~~~g~i~~~~~~~~  439 (444)
                      +|.-..+||.|++|++.-.
T Consensus       265 ~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  265 YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEEEeccCceEEEEEcccc
Confidence            5777889999999998754

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-23  Score=189.90  Aligned_cols=237  Identities=12%  Similarity=0.165  Sum_probs=194.1

Q ss_pred             EEEe-cCCCeEEEEECCCeEEEEEccCCCCc---e-eEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          105 VSWH-QHKHIVAFISGSTQVIVRDYEDSGKD---A-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       105 ~~~s-p~g~~la~~~~dg~v~iw~~~~~~~~---~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      +..+ |.+++|++|+.||.|++|++......   . ......|.+-|..+....+++.|++++.|-+|++|+......  
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--  107 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--  107 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--
Confidence            3344 46678999999999999999865221   1 122257999999999999988999999999999999983321  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE-ccCCCeEEEEeeCCCeEEEEEcCCCCc--------e---
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRYLASASYESSSFTIWDVAQGLG--------T---  247 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~~i~iwd~~~~~~--------~---  247 (444)
                                           .+..+++.|. ..|.|+++ .++...+|+|+.|+ .|.+||+.++..        .   
T Consensus       108 ---------------------~c~stir~H~-DYVkcla~~ak~~~lvaSgGLD~-~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen  108 ---------------------FCMSTIRTHK-DYVKCLAYIAKNNELVASGGLDR-KIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             ---------------------hhHhhhhccc-chheeeeecccCceeEEecCCCc-cEEEEEccCcchhhhhhccccccc
Confidence                                 2455678886 89999999 78889999999998 999999997732        1   


Q ss_pred             eee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          248 PIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       248 ~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      .+. ++...|++++.++.|..|++|+..+.+++||.++.+. ..+.+|...|..+..+++|..++++++ +++++.|++.
T Consensus       165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-DgtIrlWdLg  243 (735)
T KOG0308|consen  165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-DGTIRLWDLG  243 (735)
T ss_pred             cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-CceEEeeecc
Confidence            112 4567899999999999999999999999999999877 567899999999999999999997644 4555555543


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                                   ...++.++..|. .|+++..+|+=+++.+|+.|      +.|..=|+.+
T Consensus       244 -------------qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd------~~i~~Tdl~n  286 (735)
T KOG0308|consen  244 -------------QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD------GNIYRTDLRN  286 (735)
T ss_pred             -------------ccceeeeEEeccCceEEEeeCCCcceEEecCCC------CcEEecccCC
Confidence                         467788888888 99999999999999999998      8899888886

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=6.6e-23  Score=178.62  Aligned_cols=230  Identities=13%  Similarity=0.188  Sum_probs=180.9

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ...+.+++.|+||++||+|+.|..|.||+..+ .+....+ .+|.+.|.+++|-.....+++++.|.+|++|+++.    
T Consensus       202 ~keil~~avS~Dgkylatgg~d~~v~Iw~~~t-~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~----  275 (479)
T KOG0299|consen  202 VKEILTLAVSSDGKYLATGGRDRHVQIWDCDT-LEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ----  275 (479)
T ss_pred             cceeEEEEEcCCCcEEEecCCCceEEEecCcc-cchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehhH----
Confidence            34699999999999999999999999999998 4444444 69999999999998888999999999999999982    


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                                           ...+.++.+|+ ..|.++....-++.+.+++.|. ++++|++.........++.+.+.|
T Consensus       276 ---------------------~s~vetlyGHq-d~v~~IdaL~reR~vtVGgrDr-T~rlwKi~eesqlifrg~~~sidc  332 (479)
T KOG0299|consen  276 ---------------------LSYVETLYGHQ-DGVLGIDALSRERCVTVGGRDR-TVRLWKIPEESQLIFRGGEGSIDC  332 (479)
T ss_pred             ---------------------hHHHHHHhCCc-cceeeechhcccceEEeccccc-eeEEEeccccceeeeeCCCCCeee
Confidence                                 22445678887 8999998888888888888998 999999976666667778889999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCceeccc-------------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ++|- +...|++|+.+|.|.+|++.+.++....             .++.+|++++..|...+++++ +.++.++.|.+.
T Consensus       333 v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-S~~G~vrLW~i~  410 (479)
T KOG0299|consen  333 VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-SWSGCVRLWKIE  410 (479)
T ss_pred             EEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEec-CCCCceEEEEec
Confidence            9998 4567999999999999999887752111             123489999999998888765 455666777664


Q ss_pred             cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY  368 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~  368 (444)
                      ....         ...++..+.-...|++++|+++|++|++|.
T Consensus       411 ~g~r---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  411 DGLR---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             CCcc---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence            3211         123334444333799999999999777664

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.5e-22  Score=185.33  Aligned_cols=319  Identities=18%  Similarity=0.175  Sum_probs=215.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-EEecCCCCCeEEEEEeeC-----------CCeEEEEecCCcEE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPN-----------GGRSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~v~~l~~s~~-----------~~~ll~~~~dg~v~  168 (444)
                      +.-++.|++...+|.+.-.|..++|||+.+..+.-+ .....|...|+++.--|-           .+.+++++.|++|+
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR  405 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence            366889999999999999999999999987532221 122368889998877651           14588999999999


Q ss_pred             EEecCCCCCcceeec----cccccc-------ccc--ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe
Q 013347          169 IWAPSYPGNAASVRS----GAASFL-------GAL--SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS  235 (444)
Q Consensus       169 iw~~~~~~~~~~~~~----~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~  235 (444)
                      +|+++.......+..    .....+       ..+  ...+...-.....+.+  ...+.+++.+|+|++|++|..-| +
T Consensus       406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~--r~G~R~~~vSp~gqhLAsGDr~G-n  482 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS--RFGFRALAVSPDGQHLASGDRGG-N  482 (1080)
T ss_pred             EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc--ccceEEEEECCCcceecccCccC-c
Confidence            999984222111110    000000       000  0000000001111222  25799999999999999998887 9


Q ss_pred             EEEEEcCCCCce-eeecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCC--C
Q 013347          236 FTIWDVAQGLGT-PIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEG--R  307 (444)
Q Consensus       236 i~iwd~~~~~~~-~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g--~  307 (444)
                      +++|++..-+.. .+..|...|.|+.++.   ..++|++++.|+.|++||....-.  +.+.+|...|+++.|..+|  .
T Consensus       483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence            999999887654 4778999999999985   256789999999999999976443  5567888888888887766  4


Q ss_pred             EEEEEEcCC-------------------------ceEEEEEeecCC-------CCcCCCcCCC-Cccccccccc---CC-
Q 013347          308 MILLAFAGS-------------------------LTLGSIHFASKP-------PSLDAHLLPV-DLPDIVSLTG---SQ-  350 (444)
Q Consensus       308 ~l~~~~~~~-------------------------~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~---~~-  350 (444)
                      .+++++.+.                         .+++.+.+....       +..+.++.+. .++..+.|++   |. 
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence            444433221                         111111111000       0000111111 2344555654   32 


Q ss_pred             ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccce
Q 013347          351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF  430 (444)
Q Consensus       351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~  430 (444)
                      ....+...|.|-|||+...|      .++.++|..+++.+     ....||++.|+.+.|++|-+.     |.....||-
T Consensus       643 ~lIKv~lDPSgiY~atScsd------ktl~~~Df~sgEcv-----A~m~GHsE~VTG~kF~nDCkH-----lISvsgDgC  706 (1080)
T KOG1408|consen  643 DLIKVILDPSGIYLATSCSD------KTLCFVDFVSGECV-----AQMTGHSEAVTGVKFLNDCKH-----LISVSGDGC  706 (1080)
T ss_pred             ceEEEEECCCccEEEEeecC------CceEEEEeccchhh-----hhhcCcchheeeeeecccchh-----heeecCCce
Confidence            67788999999999999999      99999999998876     678899999999999999776     444557899


Q ss_pred             eeeeeeee
Q 013347          431 CCTYPLIF  438 (444)
Q Consensus       431 i~~~~~~~  438 (444)
                      |-+|.+..
T Consensus       707 IFvW~lp~  714 (1080)
T KOG1408|consen  707 IFVWKLPL  714 (1080)
T ss_pred             EEEEECch
Confidence            99998753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=189.32  Aligned_cols=232  Identities=17%  Similarity=0.271  Sum_probs=188.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|+++++..-+.+|++|+.|.+++|||..+ +.....+ .+|.+.|.++...+.  .++.++.|.+|++|+++.+     
T Consensus       251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~C~~~l-~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~-----  321 (537)
T KOG0274|consen  251 GVWGLAFPSGGDKLVSGSTDKTERVWDCST-GECTHSL-QGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNG-----  321 (537)
T ss_pred             CceeEEEecCCCEEEEEecCCcEEeEecCC-CcEEEEe-cCCCceEEEEEccCc--eEeeccCCceEEEEeccCc-----
Confidence            599999999889999999999999999887 7777777 499999999887654  6666778999999999832     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                          .++..+.+|. ..|.++..+  +.++++|+.|+ +|++||+.++++.. +.+|...|.++
T Consensus       322 --------------------~~l~l~~~h~-~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  322 --------------------ACLNLLRGHT-GPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTGRVYSL  377 (537)
T ss_pred             --------------------ceEEEecccc-ccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcceEEEE
Confidence                                3566777775 899999997  88999999998 99999999998886 77899999999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCC-ce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      .+.+. ..+++|+.|++|++||+++. ++ ..+..|..-+.++.+  .++.|+.+ +-++.+..|+..            
T Consensus       378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~-~aD~~Ik~WD~~------------  441 (537)
T KOG0274|consen  378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS-SADGTIKLWDAE------------  441 (537)
T ss_pred             EecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec-cccccEEEeecc------------
Confidence            88655 88999999999999999999 66 567788888866554  55667755 444555555532            


Q ss_pred             CCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          338 VDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       338 ~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                       +.+.++++.+ |. .|..+++.  ...+++++.+      +++++||+++++..
T Consensus       442 -~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~------~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  442 -EGECLRTLEGRHVGGVSALALG--KEEILCSSDD------GSVKLWDLRSGTLI  487 (537)
T ss_pred             -cCceeeeeccCCcccEEEeecC--cceEEEEecC------CeeEEEecccCchh
Confidence             4566777777 43 88888876  4567777777      99999999998776

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=5.1e-22  Score=178.38  Aligned_cols=303  Identities=15%  Similarity=0.237  Sum_probs=214.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .|+|++.+|.|.+||+|+.||+|+||.+.+ +.+...+  ...+.|.+++|+|.+.. +++++....+.|-+...+....
T Consensus       402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e  478 (733)
T KOG0650|consen  402 LVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLE  478 (733)
T ss_pred             eEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEE--eecceeEEEEecCCCCceeEEEEecCceEEeCccccchhh
Confidence            399999999999999999999999999999 6665554  35668999999998654 5666666666666554331111


Q ss_pred             e------eeccc--cccccc-cccCCC---CceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCC
Q 013347          180 S------VRSGA--ASFLGA-LSRGPG---TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL  245 (444)
Q Consensus       180 ~------~~~~~--~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~  245 (444)
                      .      +....  ..+... +.+...   ....-++..-.| ...|..+.|+..|.+|++...++  ..|.|+++....
T Consensus       479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~  557 (733)
T KOG0650|consen  479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK  557 (733)
T ss_pred             hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence            1      01110  000000 112111   011112223334 37999999999999999987643  278999998776


Q ss_pred             cee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          246 GTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       246 ~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      .+. +...++.+.++.|+|...+|++++. ..|++||+..... +.+......|.+++.+|.|..|++++.+ .++.-++
T Consensus       558 sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d-~k~~WfD  635 (733)
T KOG0650|consen  558 SQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD-KKMCWFD  635 (733)
T ss_pred             ccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC-CeeEEEE
Confidence            543 4456788999999999998888774 6799999988665 5566777889999999999998877443 4444444


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE------cCCCCeEEEEEee
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD------ARRTPLISLSLIG  396 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd------~~~~~~~~~~~~~  396 (444)
                      +.            ....+.+++..|. .+++++|++.-.++|+|+.|      |++.||.      +-.+.+  ..+++
T Consensus       636 ld------------lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD------gtv~Vfhg~VY~Dl~qnpl--iVPlK  695 (733)
T KOG0650|consen  636 LD------------LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD------GTVIVFHGMVYNDLLQNPL--IVPLK  695 (733)
T ss_pred             cc------------cCcchhHHhhhhhhhhhhhhhccccceeeeecCC------CcEEEEeeeeehhhhcCCc--eEeee
Confidence            32            2455678888888 99999999999999999998      8999884      323333  35677


Q ss_pred             eeeCCCCC----CcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          397 FIRGPGDN----PKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       397 ~~~~~~~~----i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      .++||...    |..+.|+|.--+    +.++| -+|.|.+|
T Consensus       696 ~L~gH~~~~~~gVLd~~wHP~qpW----LfsAG-Ad~tirlf  732 (733)
T KOG0650|consen  696 RLRGHEKTNDLGVLDTIWHPRQPW----LFSAG-ADGTIRLF  732 (733)
T ss_pred             eccCceeecccceEeecccCCCce----EEecC-CCceEEee
Confidence            88898665    888899997655    34433 56888876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1e-21  Score=162.48  Aligned_cols=245  Identities=16%  Similarity=0.229  Sum_probs=176.8

Q ss_pred             cCCCCCeEEEEEeeCCCeEE-EEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSL-SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..-.+.|.+|+|||....++ +++.|++||+|+++..+....                       +....| .++|.+++
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-----------------------ka~~~~-~~PvL~v~   79 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-----------------------KAQQSH-DGPVLDVC   79 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-----------------------hhhhcc-CCCeEEEE
Confidence            45678999999999555666 666799999999985322211                       112334 48999999


Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCC--eEEEEecCCcEEEEECCCCceeccccCCCc
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGD--YFFAAKFDGTFYLWETNTWTSEPWSSTSGF  296 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  296 (444)
                      |+.||..+++++.|+ .+++||+.+++...+..|.++|..+.|-+...  .|++|+.|++|+.||++.............
T Consensus        80 WsddgskVf~g~~Dk-~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR  158 (347)
T KOG0647|consen   80 WSDDGSKVFSGGCDK-QAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER  158 (347)
T ss_pred             EccCCceEEeeccCC-ceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce
Confidence            999999999999998 99999999999999999999999999988655  789999999999999998777554455566


Q ss_pred             eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCcc
Q 013347          297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDI  374 (444)
Q Consensus       297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~  374 (444)
                      ++++..  ...+++++..+ ..+..+.+.+.+..+            +.... .. .+++++..+|.+..+.|+-+    
T Consensus       159 vYa~Dv--~~pm~vVata~-r~i~vynL~n~~te~------------k~~~SpLk~Q~R~va~f~d~~~~alGsiE----  219 (347)
T KOG0647|consen  159 VYAADV--LYPMAVVATAE-RHIAVYNLENPPTEF------------KRIESPLKWQTRCVACFQDKDGFALGSIE----  219 (347)
T ss_pred             eeehhc--cCceeEEEecC-CcEEEEEcCCCcchh------------hhhcCcccceeeEEEEEecCCceEeeeec----
Confidence            766654  23455555544 456667765432211            11111 11 57889988888878999988    


Q ss_pred             ccceEEEEEcCCCCeEEEEEeeeeeCCC---------CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          375 YKGLIAIYDARRTPLISLSLIGFIRGPG---------DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~---------~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                        |.+.+..+..+.....   ..++.|.         -.|.+++|+|.    .+.+..+| +||++.||+-.-
T Consensus       220 --Grv~iq~id~~~~~~n---FtFkCHR~~~~~~~~VYaVNsi~FhP~----hgtlvTaG-sDGtf~FWDkda  282 (347)
T KOG0647|consen  220 --GRVAIQYIDDPNPKDN---FTFKCHRSTNSVNDDVYAVNSIAFHPV----HGTLVTAG-SDGTFSFWDKDA  282 (347)
T ss_pred             --ceEEEEecCCCCccCc---eeEEEeccCCCCCCceEEecceEeecc----cceEEEec-CCceEEEecchh
Confidence              9999999887422111   1233332         23678899994    45566666 889999998543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=7.2e-21  Score=167.77  Aligned_cols=260  Identities=16%  Similarity=0.218  Sum_probs=188.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|..+.|+|.+.-|+.....+.+..|+...+.-  ...++.......|.|++|.++ +.++++.++|.|.||+....   
T Consensus       202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~---  277 (626)
T KOG2106|consen  202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTN---  277 (626)
T ss_pred             eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCc---
Confidence            478999999887777777899999999987522  222333334478999999999 68899999999999998622   


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC--------------
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--------------  244 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~--------------  244 (444)
                                            ...+....| ++.|.+++...+|.+|- |+.|. .|..||-.-.              
T Consensus       278 ----------------------~~~k~~~aH-~ggv~~L~~lr~GtllS-GgKDR-ki~~Wd~~y~k~r~~elPe~~G~i  332 (626)
T KOG2106|consen  278 ----------------------RISKQVHAH-DGGVFSLCMLRDGTLLS-GGKDR-KIILWDDNYRKLRETELPEQFGPI  332 (626)
T ss_pred             ----------------------eEEeEeeec-CCceEEEEEecCccEee-cCccc-eEEeccccccccccccCchhcCCe
Confidence                                  222333366 48999999999998665 88897 9999983211              


Q ss_pred             ---------------------------CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce
Q 013347          245 ---------------------------LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV  297 (444)
Q Consensus       245 ---------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v  297 (444)
                                                 -....+.|....+.++.+|+..++++++.|+.+++|+  ..+.........++
T Consensus       333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~  410 (626)
T KOG2106|consen  333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPA  410 (626)
T ss_pred             eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCce
Confidence                                       1122345666788999999999999999999999999  44444444456788


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      .|+.|+|.| .++++... +.-..++..              ...+.++...+ +++.+.|+|+|.+||.|+.|      
T Consensus       411 ~~~~fhpsg-~va~Gt~~-G~w~V~d~e--------------~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d------  468 (626)
T KOG2106|consen  411 ECADFHPSG-VVAVGTAT-GRWFVLDTE--------------TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD------  468 (626)
T ss_pred             eEeeccCcc-eEEEeecc-ceEEEEecc--------------cceeEEEEecCCceEEEEEcCCCCEEEEecCC------
Confidence            999999999 77766443 333333331              12222222224 89999999999999999999      


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      +.|+||.+..+... ..-....  +..+|+.+.||+|++|
T Consensus       469 ~~iyiy~Vs~~g~~-y~r~~k~--~gs~ithLDwS~Ds~~  505 (626)
T KOG2106|consen  469 NHIYIYRVSANGRK-YSRVGKC--SGSPITHLDWSSDSQF  505 (626)
T ss_pred             CeEEEEEECCCCcE-EEEeeee--cCceeEEeeecCCCce
Confidence            99999998765443 2222223  3488999999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.3e-22  Score=185.73  Aligned_cols=283  Identities=13%  Similarity=0.195  Sum_probs=202.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeE-Ee-cCC---CCCeEEEEEeeCC-CeEEEEecCCcEEEEecCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-LT-SDS---QRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~-~~-~~~---~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~~  174 (444)
                      ...+++.+++-..|+.++ ...++||.++........ .. ...   .-.+..+.|...- +.+++++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            467788889888888775 446788877754222211 11 111   1245567887533 3455666679999999984


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCcee-eecC
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTP-IRRG  252 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~  252 (444)
                      ....                      .++..|..|. ..++++.|++ ...+|++|+.|| +|++||++..+... ....
T Consensus       120 ~~rn----------------------k~l~~f~EH~-Rs~~~ldfh~tep~iliSGSQDg-~vK~~DlR~~~S~~t~~~n  175 (839)
T KOG0269|consen  120 SIRN----------------------KLLTVFNEHE-RSANKLDFHSTEPNILISGSQDG-TVKCWDLRSKKSKSTFRSN  175 (839)
T ss_pred             cccc----------------------hhhhHhhhhc-cceeeeeeccCCccEEEecCCCc-eEEEEeeeccccccccccc
Confidence            2111                      1233466775 8999999998 667889999998 99999999887665 4445


Q ss_pred             CCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          253 FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       253 ~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      ...|+.++|+| .+.+|+++.+.|.+++||++....  .++..|.++|.++.|+|++.+||+|+ .|.++.+|++.+.  
T Consensus       176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~--  252 (839)
T KOG0269|consen  176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDS--  252 (839)
T ss_pred             chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCC--
Confidence            67899999999 578899999999999999998776  56789999999999999999999874 5566666664321  


Q ss_pred             CcCCCcCCCCcccccccccCCceeEEEECCCCCE-EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcce
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  408 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v  408 (444)
                               ....+.++..-.+|..+.|-|+.++ ||+++.-.+    -.|+|||++..    ..|...+..|...++.+
T Consensus       253 ---------~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d----tsV~VWDvrRP----YIP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  253 ---------RAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD----TSVHVWDVRRP----YIPYATFLEHTDSVTGI  315 (839)
T ss_pred             ---------CccceeEEeecceeeeeeeccCccchhhhhhcccc----ceEEEEeeccc----cccceeeeccCccccce
Confidence                     1223333333338999999998754 666665432    89999999974    34467788999999999


Q ss_pred             eeeeCCCCCCCceEEEEeccceee
Q 013347          409 AFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       409 ~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      +|-..    +..++--|..||.|+
T Consensus       316 ~W~~~----d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  316 AWDSG----DRINLWSCSKDGTVL  335 (839)
T ss_pred             eccCC----CceeeEeecCccHHH
Confidence            99652    223455556677665

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.9e-23  Score=189.58  Aligned_cols=231  Identities=18%  Similarity=0.304  Sum_probs=173.0

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCce-eEEecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .+..|.|+. +.++||+++..|.|.+||+......+ ......|...+.++.|++.... |++++.||+|++||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            577888886 56899999999999999998742222 2233699999999999987655 55666799999999985544


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc--eeeecCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG--TPIRRGFG  254 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~~~~  254 (444)
                      ...                         +++. ...|.+++|+| .+..|+++...| .+++||++....  ..+..|.+
T Consensus       169 ~~t-------------------------~~~n-SESiRDV~fsp~~~~~F~s~~dsG-~lqlWDlRqp~r~~~k~~AH~G  221 (839)
T KOG0269|consen  169 KST-------------------------FRSN-SESIRDVKFSPGYGNKFASIHDSG-YLQLWDLRQPDRCEKKLTAHNG  221 (839)
T ss_pred             ccc-------------------------cccc-chhhhceeeccCCCceEEEecCCc-eEEEeeccCchhHHHHhhcccC
Confidence            333                         3333 37899999999 566677666665 999999997643  34778999


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPS  330 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~  330 (444)
                      +|.++.|+|++.+||+|+.|++|+|||+.+++...  ......++.++.|-|..++.++.++  .+..+++|++..    
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR----  297 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR----  297 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc----
Confidence            99999999999999999999999999998766532  3355678999999999877654433  334445555432    


Q ss_pred             cCCCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecC
Q 013347          331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKG  370 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d  370 (444)
                              ..-+..++..|. .++.++|.. |-..|.+++.|
T Consensus       298 --------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  298 --------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             --------ccccceeeeccCccccceeccCCCceeeEeecCc
Confidence                    233456677787 788888865 45667788877

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.2e-20  Score=156.54  Aligned_cols=262  Identities=15%  Similarity=0.271  Sum_probs=187.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCC-CCcee-EEecCCCCCeEEEEEee-C-CCeEEEEecCCcEEEEecCCCCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS-GKDAC-ILTSDSQRDVKVLEWRP-N-GGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-~~~~~-~~~~~~~~~v~~l~~s~-~-~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      |+++.|.+.|+++|+++.|++++|||...+ +.-.+ .-...|.+.|..+.|.+ . |+-+++++.|+++.||.-.....
T Consensus        16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~   95 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE   95 (361)
T ss_pred             eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence            899999999999999999999999997543 22222 22257999999999954 3 45566667799999998541110


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCce------e-
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGT------P-  248 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~------~-  248 (444)
                                      .....+|....++.... ..|+++.|.|  -|-.+++++.|| .++||+.-..-..      . 
T Consensus        96 ----------------~~~~~~Wv~~ttl~Dsr-ssV~DV~FaP~hlGLklA~~~aDG-~lRIYEA~dp~nLs~W~Lq~E  157 (361)
T KOG2445|consen   96 ----------------EAHGRRWVRRTTLVDSR-SSVTDVKFAPKHLGLKLAAASADG-ILRIYEAPDPMNLSQWTLQHE  157 (361)
T ss_pred             ----------------ccccceeEEEEEeecCC-cceeEEEecchhcceEEEEeccCc-EEEEEecCCccccccchhhhh
Confidence                            01134688888888775 8999999998  577899999998 9999987543111      1 


Q ss_pred             -------eecCCCCeEEEEEecC---CCeEEEEecC-----CcEEEEECCCCc--e---eccccCCCceeEEEECCCC--
Q 013347          249 -------IRRGFGGLSILKWSPT---GDYFFAAKFD-----GTFYLWETNTWT--S---EPWSSTSGFVTGATWDPEG--  306 (444)
Q Consensus       249 -------~~~~~~~v~~~~~sp~---~~~l~~~~~d-----~~v~iwd~~~~~--~---~~~~~~~~~v~~~~~sp~g--  306 (444)
                             .-.+.....|+.|+|.   ..+|+.|+.+     +.++||....+.  .   ..+.+|..+|+.++|.|+-  
T Consensus       158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence                   1124466789999973   4577888765     478888765543  2   3466999999999999963  


Q ss_pred             --CEEEEEEcCCceEEEEEeecCCCCcC-------CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          307 --RMILLAFAGSLTLGSIHFASKPPSLD-------AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       307 --~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                        ..|++++.+ + ++++++......+.       ..+.+.....+..+.+|+ .|+.+.|+-.|..|++.+.|      
T Consensus       238 ~y~~lAvA~kD-g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD------  309 (361)
T KOG2445|consen  238 SYHLLAVATKD-G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDD------  309 (361)
T ss_pred             ceeeEEEeecC-c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCC------
Confidence              346666544 4 66666653221110       112223445566788899 99999999999999999988      


Q ss_pred             ceEEEEEcCCCCe
Q 013347          377 GLIAIYDARRTPL  389 (444)
Q Consensus       377 ~~i~vwd~~~~~~  389 (444)
                      |+||+|...-..+
T Consensus       310 G~VRLWkany~n~  322 (361)
T KOG2445|consen  310 GCVRLWKANYNNL  322 (361)
T ss_pred             ceeeehhhhhhhh
Confidence            9999998765443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.8e-22  Score=167.99  Aligned_cols=241  Identities=13%  Similarity=0.211  Sum_probs=192.2

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|+.++-......+-+++.|.+.+||.++.+                         .|+..+.+|. +.|++++|
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-------------------------~CL~~Y~GH~-GSVNsikf  198 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-------------------------ACLATYTGHT-GSVNSIKF  198 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccc-------------------------cceeeecccc-cceeeEEe
Confidence            599999999998776555566677999999999933                         4666788896 89999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEc------CCC-----------------------------------CceeeecCCCCeEE
Q 013347          220 GPDGRYLASASYESSSFTIWDV------AQG-----------------------------------LGTPIRRGFGGLSI  258 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~------~~~-----------------------------------~~~~~~~~~~~v~~  258 (444)
                      ++.+.++++++.|+ +..||..      ...                                   ....+.+|.+.|.+
T Consensus       199 h~s~~L~lTaSGD~-taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  199 HNSGLLLLTASGDE-TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             ccccceEEEccCCc-chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            99999999999998 9999962      111                                   01234567788889


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ..|-..|+.+++++.|.+-.+||+++++. ..+.+|....+.++-+|..++++++ +.+.+.+.|++..           
T Consensus       278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs-SrDtTFRLWDFRe-----------  345 (481)
T KOG0300|consen  278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS-SRDTTFRLWDFRE-----------  345 (481)
T ss_pred             hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe-ccCceeEeccchh-----------
Confidence            99999999999999999999999999998 6688999999999999999888765 4445555555432           


Q ss_pred             CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                       ....+..|.||. .|+++.|.-|.+ +++|+.|      .+|+|||+++..-    ++.+++. .+++..++.|..+. 
T Consensus       346 -aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD------rTvKvWdLrNMRs----plATIRt-dS~~NRvavs~g~~-  411 (481)
T KOG0300|consen  346 -AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD------RTVKVWDLRNMRS----PLATIRT-DSPANRVAVSKGHP-  411 (481)
T ss_pred             -hcceeeeecccccceeEEEEecCCc-eeecCCC------ceEEEeeeccccC----cceeeec-CCccceeEeecCCc-
Confidence             345577899999 999999997765 7788887      9999999997443    3455554 56678888876544 


Q ss_pred             CCCceEEEEeccceeeeeeee
Q 013347          417 KQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       417 ~~~~~l~~~~~~g~i~~~~~~  437 (444)
                          ++++-.++-.|.+|+|.
T Consensus       412 ----iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  412 ----IIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             ----eEEeccCCceEEEEecC
Confidence                58899999999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.8e-22  Score=175.09  Aligned_cols=259  Identities=14%  Similarity=0.130  Sum_probs=193.0

Q ss_pred             CeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccc
Q 013347          112 HIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  190 (444)
Q Consensus       112 ~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  190 (444)
                      .+++++. ....+.+|.+....+..  ...--.++|.+++-+|+|..+++++-.|.+++|.+.++.              
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--------------  114 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--------------  114 (476)
T ss_pred             hheeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEecccc--------------
Confidence            4555554 45678999987532222  122457889999999996666655578999999999432              


Q ss_pred             ccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC---------Cce-eeecCCCCeEEEE
Q 013347          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---------LGT-PIRRGFGGLSILK  260 (444)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~---------~~~-~~~~~~~~v~~~~  260 (444)
                                 ++..+.+|. ..|+|+.|+-||.+|++|+.|| .|.+|.+..-         +.. .+..|.-+|+++.
T Consensus       115 -----------LL~v~~aHY-Q~ITcL~fs~dgs~iiTgskDg-~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~  181 (476)
T KOG0646|consen  115 -----------LLNVLSAHY-QSITCLKFSDDGSHIITGSKDG-AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQ  181 (476)
T ss_pred             -----------HHHHHHhhc-cceeEEEEeCCCcEEEecCCCc-cEEEEEEEeecccccCCCccceeeeccCcceeEEEE
Confidence                       444566776 7999999999999999999998 9999987421         112 2445778899988


Q ss_pred             EecC--CCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc---CCCc
Q 013347          261 WSPT--GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL---DAHL  335 (444)
Q Consensus       261 ~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~  335 (444)
                      ..+.  ..++++++.|.++++||+..+...........+++++.+|-++.+++|. .++.++...+...+..-   ..+.
T Consensus       182 ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  182 IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             ecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccc
Confidence            8764  4578999999999999999998866666778899999999999888764 45788888876643211   1122


Q ss_pred             CCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          336 LPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      .......+..+.||.   .|++++++-||..|++|+.|      |.+.|||+.+.+++     +++....++|+.+.+.
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d------g~VcvWdi~S~Q~i-----Rtl~~~kgpVtnL~i~  328 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED------GKVCVWDIYSKQCI-----RTLQTSKGPVTNLQIN  328 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCCC------CCEEEEecchHHHH-----HHHhhhccccceeEee
Confidence            233455667778877   79999999999999999999      99999999987765     3333234556666663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.3e-21  Score=162.98  Aligned_cols=241  Identities=15%  Similarity=0.256  Sum_probs=165.2

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEE-EeeccCCCceEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALS  218 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~  218 (444)
                      .+|.+.|++++|+.||++|++++.|++|+||+++.-.....                    ++++ .+.   -+..+.++
T Consensus        83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------------------r~~R~nve---~dhpT~V~  139 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------------------RCIRQNVE---YDHPTRVV  139 (420)
T ss_pred             hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------------------hHhhcccc---CCCceEEE
Confidence            69999999999999999999999999999999983111000                    0000 111   13568999


Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCc-------eee------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLG-------TPI------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~-------~~~------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  285 (444)
                      |+||.+-++.....|.++++|.+...+.       ..+      ..|.-.+..+-...++.+|++++.|..|.+|+++..
T Consensus       140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq  219 (420)
T KOG2096|consen  140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQ  219 (420)
T ss_pred             ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCc
Confidence            9999998877776667999998754321       111      123445666777778899999999999999999954


Q ss_pred             ceeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          286 TSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      .+..+......-+..+.||+|+++++++ ..+..+|.+-+..     ++...  +...+..++||. .|..++||++.+.
T Consensus       220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-----dG~fq--ev~rvf~LkGH~saV~~~aFsn~S~r  292 (420)
T KOG2096|consen  220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-----DGTFQ--EVKRVFSLKGHQSAVLAAAFSNSSTR  292 (420)
T ss_pred             eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc-----Ccchh--hhhhhheeccchhheeeeeeCCCcce
Confidence            4455555556667889999999998653 3344444443322     11111  223456788999 9999999999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEE--Eee----eeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLS--LIG----FIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~--~~~----~~~~~~~~i~~v~~spdg~~  416 (444)
                      +++.|.|      |+++|||++-.......  .++    .+..-++....++.||.|+.
T Consensus       293 ~vtvSkD------G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~  345 (420)
T KOG2096|consen  293 AVTVSKD------GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDS  345 (420)
T ss_pred             eEEEecC------CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcE
Confidence            9999999      99999998632111000  011    11222334457899999886

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.6e-21  Score=158.53  Aligned_cols=259  Identities=16%  Similarity=0.291  Sum_probs=193.3

Q ss_pred             EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      +..+|.+-|.++.|.+-|+++++++.|++|+|||.+..                     .+.|.+....+.|. +.|..+
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------------s~~W~~Ts~Wrah~-~Si~rV   65 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD---------------------SGTWSCTSSWRAHD-GSIWRV   65 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCC---------------------CCceEEeeeEEecC-CcEEEE
Confidence            33589999999999999999999999999999997622                     45788888899996 899999


Q ss_pred             EEcc--CCCeEEEEeeCCCeEEEEEcCCC--C--------ceeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECC
Q 013347          218 SWGP--DGRYLASASYESSSFTIWDVAQG--L--------GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       218 ~~sp--~~~~l~~~~~d~~~i~iwd~~~~--~--------~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~  283 (444)
                      .|.+  -|+.+|+++.|+ ++.||.-...  +        +..+....+.|+.++|.|.  |-.|++++.||.+|||+.-
T Consensus        66 ~WAhPEfGqvvA~cS~Dr-tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~  144 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYDR-TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP  144 (361)
T ss_pred             EecCccccceEEEEecCC-ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence            9975  689999999998 9999975311  1        1223445688999999995  6678999999999999875


Q ss_pred             CCc------ee-cc-------ccCCCceeEEEECCCC---CEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCccc
Q 013347          284 TWT------SE-PW-------SSTSGFVTGATWDPEG---RMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPD  342 (444)
Q Consensus       284 ~~~------~~-~~-------~~~~~~v~~~~~sp~g---~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      ..-      .+ .+       ..+.....|+.|+|..   .+|++++.++    ....++......         .+...
T Consensus       145 dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~---------rKw~k  215 (361)
T KOG2445|consen  145 DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG---------RKWLK  215 (361)
T ss_pred             CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc---------ceeee
Confidence            321      11 11       1356678899999853   5788877652    133444432210         03345


Q ss_pred             ccccccCC-ceeEEEECCCC----CEEEEEecCCCccccceEEEEEcCCCC---------------eEEEEEeeeeeCCC
Q 013347          343 IVSLTGSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTP---------------LISLSLIGFIRGPG  402 (444)
Q Consensus       343 ~~~~~~~~-~v~~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~  402 (444)
                      +.++.+|. +|++++|.|+-    ..||+++.|      | |+||+++...               -+....+..+.+|.
T Consensus       216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD------g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~  288 (361)
T KOG2445|consen  216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKD------G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN  288 (361)
T ss_pred             ehhcCCCCCcceeeeeccccCCceeeEEEeecC------c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC
Confidence            66777888 99999999963    579999988      8 9999987311               12234456677899


Q ss_pred             CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          403 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       403 ~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      ..|+.+.|.-.|.     +|+-.-+||.|++|...|..
T Consensus       289 ~~VWrv~wNmtGt-----iLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  289 GEVWRVRWNMTGT-----ILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             CceEEEEEeeeee-----EEeecCCCceeeehhhhhhh
Confidence            9999999986554     57777799999999887753

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-20  Score=171.59  Aligned_cols=335  Identities=16%  Similarity=0.164  Sum_probs=225.0

Q ss_pred             cccCcccccccccccccccccccCCCCccCcccc------------------------ceEEEEEecCCCeEEEEECCCe
Q 013347           67 REEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEV------------------------DLQGVSWHQHKHIVAFISGSTQ  122 (444)
Q Consensus        67 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~sp~g~~la~~~~dg~  122 (444)
                      ..+...+..++.|+.+..+..+......+|+...                        .|++++.+|.++.++.|+.||.
T Consensus        54 ~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv  133 (691)
T KOG2048|consen   54 LSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV  133 (691)
T ss_pred             cCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCce
Confidence            4556667777777777777777666555555421                        4999999999999999999997


Q ss_pred             EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEE
Q 013347          123 VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL  202 (444)
Q Consensus       123 v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (444)
                      +..++...+............+.|.+++|+|++.+++.++.||.|++||...+.....+..+                  
T Consensus       134 l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~------------------  195 (691)
T KOG2048|consen  134 LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ------------------  195 (691)
T ss_pred             EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec------------------
Confidence            77777765322223333456789999999999888999999999999999855544422111                  


Q ss_pred             EEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEE
Q 013347          203 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  281 (444)
Q Consensus       203 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd  281 (444)
                      ...+.....--|.++.|-.++ .|++|...| +|.+||...+.... ...|...|.+++.+++++++++++.|+.|..|.
T Consensus       196 ~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G-~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  196 LDRLSKREPTIVWSVLFLRDS-TIASGDSAG-TVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             ccccccCCceEEEEEEEeecC-cEEEecCCc-eEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            111222112357778777665 578888887 99999999887665 556788999999999988898888888777665


Q ss_pred             CCCCcee-------ccc---------------------------------------------------------------
Q 013347          282 TNTWTSE-------PWS---------------------------------------------------------------  291 (444)
Q Consensus       282 ~~~~~~~-------~~~---------------------------------------------------------------  291 (444)
                      ..+.+..       .+.                                                               
T Consensus       274 ~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h  353 (691)
T KOG2048|consen  274 LTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAH  353 (691)
T ss_pred             ecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccc
Confidence            4432100       000                                                               


Q ss_pred             --------------------------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC---------CCCc-----
Q 013347          292 --------------------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK---------PPSL-----  331 (444)
Q Consensus       292 --------------------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~---------~~~~-----  331 (444)
                                                .....|.+.+.||+|++|+.+.-.+.+++.+.....         +...     
T Consensus       354 ~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~  433 (691)
T KOG2048|consen  354 GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASA  433 (691)
T ss_pred             cccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhcccee
Confidence                                      001147788899999999987654444444432110         0000     


Q ss_pred             ------------------CCC---cCCCCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          332 ------------------DAH---LLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       332 ------------------~~~---~~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                                        ..+   +...+.+.+..+...  . .|..++.||+|+|||+.+..      |.|.+|++++.
T Consensus       434 i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~  507 (691)
T KOG2048|consen  434 ISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETL  507 (691)
T ss_pred             eEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccc
Confidence                              000   000011112222222  1 78999999999999999988      99999999986


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +...     ........++.++|+|..+-    -|.+..+++.+.-|++
T Consensus       508 ~~~~-----l~~rln~~vTa~~~~~~~~~----~lvvats~nQv~efdi  547 (691)
T KOG2048|consen  508 ESHL-----LKVRLNIDVTAAAFSPFVRN----RLVVATSNNQVFEFDI  547 (691)
T ss_pred             eeec-----chhccCcceeeeeccccccC----cEEEEecCCeEEEEec
Confidence            6431     11122467889999976432    4789999999998887

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.1e-22  Score=195.83  Aligned_cols=293  Identities=16%  Similarity=0.235  Sum_probs=210.7

Q ss_pred             EEEEecCCC-eEEEEE----------CCCeEEEEEccCCCCc---eeEEecCCCCCeEEEEEeeCCCe---EEEEec-CC
Q 013347          104 GVSWHQHKH-IVAFIS----------GSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGR---SLSVGC-KG  165 (444)
Q Consensus       104 ~~~~sp~g~-~la~~~----------~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~~~---ll~~~~-dg  165 (444)
                      .++|+|++. ++|+|.          .+.++.||.+......   ...-...-...-+.++|.+.+..   ++++|. ||
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            478999986 555542          3556777776643111   22222234567889999998776   466555 79


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCC
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQG  244 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~  244 (444)
                      .|.+||......                   +....++.....|+ +.|..+.|++... +||+|+.+| .|.|||+.+.
T Consensus        91 ~I~ly~p~~~~~-------------------~~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~g-eI~iWDlnn~  149 (1049)
T KOG0307|consen   91 NIVLYDPASIIA-------------------NASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADDG-EILIWDLNKP  149 (1049)
T ss_pred             ceEEecchhhcc-------------------CcchHHHhhhcccC-CceeeeeccccCCceeeccCCCC-cEEEeccCCc
Confidence            999999873100                   11112344566776 8999999999555 899999998 9999999875


Q ss_pred             Cceeee---cCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCC--CceeEEEECCCCCEEEEEEcCCc
Q 013347          245 LGTPIR---RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       245 ~~~~~~---~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~--~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      +.....   ...+.|.+++|+.. .+.|++++.+|.+.|||++..+. ..+..+.  ..+..++|+|++..-+..++++.
T Consensus       150 ~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd  229 (1049)
T KOG0307|consen  150 ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD  229 (1049)
T ss_pred             CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence            433322   23578999999985 45568999999999999998866 3444333  35789999998854333334445


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  395 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~  395 (444)
                      ..-++.+|+.+.         ...+++.+++|. +|.++.|++.+ .+|++++.|      +.|.+|+.++++++     
T Consensus       230 ~~PviqlWDlR~---------assP~k~~~~H~~GilslsWc~~D~~lllSsgkD------~~ii~wN~~tgEvl-----  289 (1049)
T KOG0307|consen  230 SAPVIQLWDLRF---------ASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD------NRIICWNPNTGEVL-----  289 (1049)
T ss_pred             CCceeEeecccc---------cCCchhhhcccccceeeeccCCCCchhhhcccCC------CCeeEecCCCceEe-----
Confidence            556667665321         345678889999 99999999976 888999888      99999999998887     


Q ss_pred             eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347          396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                      ..+...++.+..+.|+|.    ..+++++.+=+|+|.+|++.-.+.
T Consensus       290 ~~~p~~~nW~fdv~w~pr----~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  290 GELPAQGNWCFDVQWCPR----NPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             eecCCCCcceeeeeecCC----CcchhhhheeccceeeeeeecCCc
Confidence            445556788999999985    344688888899999999986653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=5.2e-21  Score=166.77  Aligned_cols=286  Identities=16%  Similarity=0.194  Sum_probs=201.2

Q ss_pred             cceEEEEEecCC--CeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEecCC
Q 013347          100 VDLQGVSWHQHK--HIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus       100 ~~v~~~~~sp~g--~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~~  174 (444)
                      ..|++++|+|..  +++|+|..-|+|-+||+.+.  ......+...|..+|.++.|+|.+ .++++++.||+|++-|++.
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~  266 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEG  266 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecc
Confidence            369999999965  57888889999999999532  233334446899999999999964 4688888899999999983


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecC
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRG  252 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~  252 (444)
                      ......+                       .+... ...+..+.|+.+...++.+..-| ...+||++++...  .+.-|
T Consensus       267 ~i~e~v~-----------------------s~~~d-~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh  321 (498)
T KOG4328|consen  267 NISEEVL-----------------------SLDTD-NIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLH  321 (498)
T ss_pred             hhhHHHh-----------------------hcCcc-ceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhh
Confidence            2211111                       11111 25678888998888888888887 9999999987653  36667


Q ss_pred             CCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          253 FGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       253 ~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      +..|.+++++|... +|++++.|++++|||++.-..     .....|...|.++.|||.+-.|++.+. +..+++|+..-
T Consensus       322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~-D~~IRv~dss~  400 (498)
T KOG4328|consen  322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ-DNEIRVFDSSC  400 (498)
T ss_pred             hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc-CCceEEeeccc
Confidence            78999999999654 569999999999999986433     234489999999999999887776644 35666666420


Q ss_pred             CCCCcCCCcCCCCccccccccc---CC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTG---SQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~---~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                      .    ..     ...+..++.+   +.   .....+|.|+..+++++..-      ..|-|+|-+.++.+     ..+..
T Consensus       401 ~----sa-----~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~------r~IDv~~~~~~q~v-----~el~~  460 (498)
T KOG4328|consen  401 I----SA-----KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP------RPIDVFDGNGGQMV-----CELHD  460 (498)
T ss_pred             c----cc-----cCCccceeeccCcccccccchhheeCCCccEEEEeccC------cceeEEcCCCCEEe-----eeccC
Confidence            0    00     1122222221   11   45567899999999999876      78999999987754     22222


Q ss_pred             C-CCCCcce-eeeeCCCCCCCceEEEEeccceeeeee
Q 013347          401 P-GDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       401 ~-~~~i~~v-~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      . ...|.++ +|+|-+.-    +++-+.+.|.|++|.
T Consensus       461 P~~~tI~~vn~~HP~~~~----~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  461 PESSTIPSVNEFHPMRDT----LAAGGNSSGKIYVFT  493 (498)
T ss_pred             ccccccccceeecccccc----eeccCCccceEEEEe
Confidence            2 2244444 78886542    355556778888663

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=1.1e-20  Score=155.85  Aligned_cols=272  Identities=14%  Similarity=0.205  Sum_probs=177.8

Q ss_pred             cCccccceEEEEEec-CCCeEEEEECCCeEEEEEccCCC---------CceeEE----ecCCCCCeEEEEEeeCCC-eEE
Q 013347           95 HLLPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSG---------KDACIL----TSDSQRDVKVLEWRPNGG-RSL  159 (444)
Q Consensus        95 ~~~~~~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~---------~~~~~~----~~~~~~~v~~l~~s~~~~-~ll  159 (444)
                      ...++..|+++...+ .|+++++|+.||.|.|||++...         +..+++    ..+|.-.|.++.|-|-.. .+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            334456799999998 68999999999999999998642         111211    136777999999998544 455


Q ss_pred             EEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC---CCeEEEEeeCCCeE
Q 013347          160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSF  236 (444)
Q Consensus       160 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~~i  236 (444)
                      +++.|.++++||.++.+...                         .|.-  ++.|.+-+++|=   -.++|+|..+- +|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~-------------------------~F~m--e~~VYshamSp~a~sHcLiA~gtr~~-~V  170 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAV-------------------------DFKM--EGKVYSHAMSPMAMSHCLIAAGTRDV-QV  170 (397)
T ss_pred             cccccceEEEeecccceeeE-------------------------Eeec--CceeehhhcChhhhcceEEEEecCCC-cE
Confidence            55669999999998443322                         2222  257888888882   33556666665 99


Q ss_pred             EEEEcCCCCcee-eecCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC------------ce----eccccCCCcee
Q 013347          237 TIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW------------TS----EPWSSTSGFVT  298 (444)
Q Consensus       237 ~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~------------~~----~~~~~~~~~v~  298 (444)
                      ++.|+.++.... +.+|.+.|.++.|+|...++ ++|+.||.|++||++..            +.    +.-..|.+.++
T Consensus       171 rLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn  250 (397)
T KOG4283|consen  171 RLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN  250 (397)
T ss_pred             EEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence            999999998876 67789999999999988876 89999999999999743            11    12336888999


Q ss_pred             EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccce
Q 013347          299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL  378 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~  378 (444)
                      +++|+.++.++++.+ .+.++..|+..+....+..     -++.+..-+.+-.+. +. +.+...++.--.+      +.
T Consensus       251 gla~tSd~~~l~~~g-td~r~r~wn~~~G~ntl~~-----~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~------~~  316 (397)
T KOG4283|consen  251 GLAWTSDARYLASCG-TDDRIRVWNMESGRNTLRE-----FGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPND------GS  316 (397)
T ss_pred             eeeecccchhhhhcc-CccceEEeecccCcccccc-----cccccccccccceEE-Ee-ecccceEEEEecC------Ce
Confidence            999999999998653 3355666665443221111     011111111111222 22 2233333222222      56


Q ss_pred             EEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          379 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       379 i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      +.++++-.+..+     ..+.+|...|.+.++-|+
T Consensus       317 lall~~~sgs~i-----r~l~~h~k~i~c~~~~~~  346 (397)
T KOG4283|consen  317 LALLNLLEGSFV-----RRLSTHLKRINCAAYRPD  346 (397)
T ss_pred             EEEEEccCceEE-----EeeecccceeeEEeecCc
Confidence            777776665544     455666666666666655

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.5e-20  Score=169.04  Aligned_cols=264  Identities=14%  Similarity=0.178  Sum_probs=202.4

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .+|.++|++.+.+.||.+-.+|.|.||++...--....+..+....|.+++|++. ++|++++.+|.|.-||+.+.+...
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~  104 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKY  104 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeE
Confidence            3699999999999999999999999999998534444454455678999999955 899999999999999998544433


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee---ecCCCCe
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI---RRGFGGL  256 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~~~v  256 (444)
                      .+.                         .. .+.|.+++.+|.+..++.++.|| .+..++...++....   ...++++
T Consensus       105 ~~d-------------------------~~-gg~IWsiai~p~~~~l~IgcddG-vl~~~s~~p~~I~~~r~l~rq~sRv  157 (691)
T KOG2048|consen  105 NID-------------------------SN-GGAIWSIAINPENTILAIGCDDG-VLYDFSIGPDKITYKRSLMRQKSRV  157 (691)
T ss_pred             Eec-------------------------CC-CcceeEEEeCCccceEEeecCCc-eEEEEecCCceEEEEeecccccceE
Confidence            322                         22 47899999999999999999998 888888877765432   2345899


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceec-----ccc----CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----WSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-----~~~----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      .+++|+|++..+++|+.||.|++||..++....     +..    ...-|+++.|-.++. |+++ +..+.   +.+|+.
T Consensus       158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sg-DS~G~---V~FWd~  232 (691)
T KOG2048|consen  158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASG-DSAGT---VTFWDS  232 (691)
T ss_pred             EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEe-cCCce---EEEEcc
Confidence            999999999999999999999999999887633     221    333578888876664 4434 44444   455543


Q ss_pred             CCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  406 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~  406 (444)
                      .          .+..++.+..|. .|.+++..+++.++++++.|      +.|.-|...++... +........|...|.
T Consensus       233 ~----------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd------~~ii~~~~~~~~~~-wv~~~~r~~h~hdvr  295 (691)
T KOG2048|consen  233 I----------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVD------PKIIQYSLTTNKSE-WVINSRRDLHAHDVR  295 (691)
T ss_pred             c----------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCC------CceEEEEecCCccc-eeeeccccCCcccce
Confidence            1          456677888888 89999999999999999998      88888887765431 222334457888888


Q ss_pred             ceeeeeC
Q 013347          407 PVAFSFH  413 (444)
Q Consensus       407 ~v~~spd  413 (444)
                      +++..++
T Consensus       296 s~av~~~  302 (691)
T KOG2048|consen  296 SMAVIEN  302 (691)
T ss_pred             eeeeecc
Confidence            8888776

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=7.9e-22  Score=173.40  Aligned_cols=264  Identities=16%  Similarity=0.247  Sum_probs=200.9

Q ss_pred             ccceEEEEEecCCCeEEEE--ECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~--~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      ..++.++.|+.... |+++  +.|..+++|.-.... ..+..- ......-.|++......+++++|..+.|+|||+..+
T Consensus        34 ~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~-k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k  111 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVR-KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK  111 (673)
T ss_pred             CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceee-ccccchHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence            34689999998775 4444  478889999876431 122221 222334445555455477888888999999999821


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC--
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--  253 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--  253 (444)
                                               .+.+.+.+|. ..|+++.++....+||+++..| .|.|..+.++.....+.+.  
T Consensus       112 -------------------------l~hr~lkdh~-stvt~v~YN~~DeyiAsvs~gG-diiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen  112 -------------------------LIHRFLKDHQ-STVTYVDYNNTDEYIASVSDGG-DIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             -------------------------HHhhhccCCc-ceeEEEEecCCcceeEEeccCC-cEEEEecccCccccceecCCC
Confidence                                     2345577786 8999999999999999998877 9999999998776655543  


Q ss_pred             CCeEEEEEecCCCeE-EEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          254 GGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      ..|+-+.|+|..+++ .+++.+|.|.+||+.....  .....|..+...++|+|..+.|+++.+-+.+++.++...    
T Consensus       165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s----  240 (673)
T KOG4378|consen  165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS----  240 (673)
T ss_pred             CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc----
Confidence            456789999988766 6788999999999987665  345689999999999999998888777777777777542    


Q ss_pred             cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                               ......+....+...++|+++|.+|++|+..      |.|..||++..+.    |+..+..|...|++++|
T Consensus       241 ---------~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~------G~~i~YD~R~~k~----Pv~v~sah~~sVt~vaf  301 (673)
T KOG4378|consen  241 ---------QASTDRLTYSHPLSTVAFSECGTYLCAGNSK------GELIAYDMRSTKA----PVAVRSAHDASVTRVAF  301 (673)
T ss_pred             ---------ccccceeeecCCcceeeecCCceEEEeecCC------ceEEEEecccCCC----CceEeeecccceeEEEe
Confidence                     2233444445588999999999999999988      9999999997543    46778899999999999


Q ss_pred             eeCC
Q 013347          411 SFHD  414 (444)
Q Consensus       411 spdg  414 (444)
                      -|-.
T Consensus       302 q~s~  305 (673)
T KOG4378|consen  302 QPSP  305 (673)
T ss_pred             eecc
Confidence            8763

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=5.8e-21  Score=159.49  Aligned_cols=266  Identities=15%  Similarity=0.182  Sum_probs=189.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCC----C-------CceeEEecCCCCCeEEEEEe-------eCCCeEEEEec
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS----G-------KDACILTSDSQRDVKVLEWR-------PNGGRSLSVGC  163 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~----~-------~~~~~~~~~~~~~v~~l~~s-------~~~~~ll~~~~  163 (444)
                      ...+.|+|||..|++-+.|..+++|++...    +       .....+.-.....|+..+|-       |+...+++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            346899999999999999999999998754    1       01111112345678888885       56455666677


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc-C
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV-A  242 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~-~  242 (444)
                      +.-|++||.-+++........                   ..+..  -....+++|+|||..|++|. .. .|+++|+ +
T Consensus       132 ~~PIh~wdaftG~lraSy~~y-------------------dh~de--~taAhsL~Fs~DGeqlfaGy-kr-cirvFdt~R  188 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAY-------------------DHQDE--YTAAHSLQFSPDGEQLFAGY-KR-CIRVFDTSR  188 (406)
T ss_pred             cCceeeeeccccccccchhhh-------------------hhHHh--hhhheeEEecCCCCeEeecc-cc-eEEEeeccC
Confidence            899999999854432221110                   00000  12457899999999998765 44 8999999 4


Q ss_pred             CCCcee---ee-----cCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEE
Q 013347          243 QGLGTP---IR-----RGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       243 ~~~~~~---~~-----~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      .+..-.   ..     +..+-+.+++|+|. ...++.|+...++-||.-..... ..+.+|.+.|+.+.|+++|+.++++
T Consensus       189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence            443221   11     22466889999995 45789999999999998877766 5566999999999999999999999


Q ss_pred             EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC-C
Q 013347          313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-T  387 (444)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~-~  387 (444)
                      ...+..+-.|+++..            ..++-.+..|.    .=.-+...|+|++|++|+.+      |.|++||++. +
T Consensus       269 aRk~dkIl~WDiR~~------------~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td------G~V~vwdlk~~g  330 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYS------------RDPVYALERHVGDTNQRILFDLDPKGEILASGDTD------GSVRVWDLKDLG  330 (406)
T ss_pred             ccCCCeEEEEeehhc------------cchhhhhhhhccCccceEEEecCCCCceeeccCCC------ccEEEEecCCCC
Confidence            888888888887642            22333333332    11234557999999999988      9999999997 4


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      ..     ...+..+...+..|+++|-
T Consensus       331 n~-----~sv~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  331 NE-----VSVTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             Cc-----ccccccccccccceecCcc
Confidence            42     3456678888999999986

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=9.4e-21  Score=161.30  Aligned_cols=244  Identities=18%  Similarity=0.365  Sum_probs=172.6

Q ss_pred             eEEEEEec--CCCeEEEEECCCeEEEEEccCC--------------CCceeEEecCCCCCeEEEEEeeC-CCeEEEEecC
Q 013347          102 LQGVSWHQ--HKHIVAFISGSTQVIVRDYEDS--------------GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCK  164 (444)
Q Consensus       102 v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~--------------~~~~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~d  164 (444)
                      ++.+.-++  +..+.|+-+..|.|+||++...              .........+|...=+.|.|||- .+.|+++.+-
T Consensus       154 ~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~  233 (440)
T KOG0302|consen  154 INRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV  233 (440)
T ss_pred             cceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccc
Confidence            33344444  3345566678899999998532              11122223588889999999993 2457777777


Q ss_pred             CcEEEEecCCCCCcceeeccccccccccccCCCCceEEE-EEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcC
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~  242 (444)
                      +.|++|...+                       +.|..- ..+.+|. ..|-.++||| ....|++|+.|+ +|+|||++
T Consensus       234 ~~I~lw~~~~-----------------------g~W~vd~~Pf~gH~-~SVEDLqWSptE~~vfaScS~Dg-sIrIWDiR  288 (440)
T KOG0302|consen  234 KGIHLWEPST-----------------------GSWKVDQRPFTGHT-KSVEDLQWSPTEDGVFASCSCDG-SIRIWDIR  288 (440)
T ss_pred             cceEeeeecc-----------------------CceeecCccccccc-cchhhhccCCccCceEEeeecCc-eEEEEEec
Confidence            9999999873                       244432 3467775 8999999999 456789999998 99999999


Q ss_pred             CC---CceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee----ccccCCCceeEEEECCCCCEEEEEEcC
Q 013347          243 QG---LGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       243 ~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      .+   .++....|.+.|..+.|+.+-.+|++|+.||+++|||++.-+..    .+..|..+|+++.|+|...-++.+++.
T Consensus       289 s~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  289 SGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             CCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence            98   34556778999999999998889999999999999999976653    577899999999999987766666666


Q ss_pred             CceEEEEEeecCCC------CcCCCcCCCCcccccccccCCceeEEEECCCC-CEEEEEecC
Q 013347          316 SLTLGSIHFASKPP------SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKG  370 (444)
Q Consensus       316 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~d  370 (444)
                      +..+..|++.-...      .-...+.++..+.+..-.+...+..+.|++.- .+|++.+.|
T Consensus       369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID  430 (440)
T ss_pred             CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence            67777777643211      00011222222222222334478899999864 567777766

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=176.11  Aligned_cols=274  Identities=17%  Similarity=0.267  Sum_probs=203.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|..++|-|||..|+.+. +..+.|||.+. |.....+ ++|.+.|++++|+.||.++++++.|..|.+|+-..      
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl------   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL------   84 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCC-ccccccc-ccccceEEEEEEccCCceeccCCCceeEEEecccc------
Confidence            689999999999988764 56789999998 5554554 69999999999999999999999999999999762      


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                                            ...++..|...|.|+.|+|-...|++++-.  ..-+|........ .......+.+++
T Consensus        85 ----------------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLs--dFglWS~~qK~V~-K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   85 ----------------------EGILKYSHNDAIQCMSFNPITHQLASCSLS--DFGLWSPEQKSVS-KHKSSSRIICCS  139 (1081)
T ss_pred             ----------------------cceeeeccCCeeeEeecCchHHHhhhcchh--hccccChhhhhHH-hhhhheeEEEee
Confidence                                  223444445899999999999999999876  4788987644322 223346788999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCC-----EEEEEEcCCceEEEEEeecCCCCcC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGR-----MILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~-----~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      |..||++|+.|-.+|+|.+-+-...+...+.   +.+++|++++|+|...     .+++... +.++....+        
T Consensus       140 WtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-~qTLSFy~L--------  210 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW-GQTLSFYQL--------  210 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec-cceeEEEEe--------
Confidence            9999999999999999998865433332222   5678899999999642     2332211 111111111        


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                            .+..+..-+.-. ...++.+-++|.|+..|+.|      +.+.+|..+. -     .++++......|+.|+..
T Consensus       211 ------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd------k~L~~fTR~G-v-----rLGTvg~~D~WIWtV~~~  272 (1081)
T KOG1538|consen  211 ------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSD------KQLSLFTRDG-V-----RLGTVGEQDSWIWTVQAK  272 (1081)
T ss_pred             ------cceeecccccCCCCchhheeccCCcEEEEccCC------CceEEEeecC-e-----EEeeccccceeEEEEEEc
Confidence                  223222222222 45688999999999999998      8899998663 1     124555567789999999


Q ss_pred             eCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      |++++     .++|..||+|..|.+.+++
T Consensus       273 PNsQ~-----v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  273 PNSQY-----VVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             cCCce-----EEEEEccCeeehhhhHHhH
Confidence            99997     7899999999999988765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.9e-21  Score=167.04  Aligned_cols=242  Identities=13%  Similarity=0.196  Sum_probs=179.2

Q ss_pred             ceEEEEEecCCC-eEEEEECCCeEEEEEccCCCCceeEEecCC-CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      +|.++.|.|+|. .+++++....++.||+.+..........++ ...+.....+++++.++..|..|.|.+....+....
T Consensus       259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli  338 (514)
T KOG2055|consen  259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI  338 (514)
T ss_pred             ccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh
Confidence            699999999998 888999999999999987422222222233 235677888999998999999999999887744433


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe--
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL--  256 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v--  256 (444)
                      ..+.                         -  .+.|..+.|+.+++.|++++.+| .|.+||++...++......+.|  
T Consensus       339 ~s~K-------------------------i--eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~G~v~g  390 (514)
T KOG2055|consen  339 TSFK-------------------------I--EGVVSDFTFSSDSKELLASGGTG-EVYVWNLRQNSCLHRFVDDGSVHG  390 (514)
T ss_pred             heee-------------------------e--ccEEeeEEEecCCcEEEEEcCCc-eEEEEecCCcceEEEEeecCccce
Confidence            3222                         1  36899999999999999999998 9999999999888766666655  


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCc----e---eccccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWT----S---EPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKP  328 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~---~~~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~  328 (444)
                      +++|.++++++||+|+..|.|.|||.++.-    .   ..+......|+++.|+|+.+.|+.++. ....++.+++-+..
T Consensus       391 ts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  391 TSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             eeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            567778999999999999999999975422    1   233455678999999999999886643 23445555553221


Q ss_pred             CCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      .   -.    ..+...+--+  .|++++|||.|.+||.|..+      |.+.+|.+.
T Consensus       471 V---Fs----NfP~~n~~vg--~vtc~aFSP~sG~lAvGNe~------grv~l~kL~  512 (514)
T KOG2055|consen  471 V---FS----NFPTSNTKVG--HVTCMAFSPNSGYLAVGNEA------GRVHLFKLH  512 (514)
T ss_pred             e---ec----cCCCCCCccc--ceEEEEecCCCceEEeecCC------CceeeEeec
Confidence            0   00    1111111111  58999999999999999988      999999875

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.6e-22  Score=178.91  Aligned_cols=239  Identities=17%  Similarity=0.243  Sum_probs=184.4

Q ss_pred             EEEEe-eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347          148 VLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  226 (444)
Q Consensus       148 ~l~~s-~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  226 (444)
                      .+..+ |++++|+++|.||.|++|++..........                   ....++.|. ..|..++...+++.|
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------------~~asme~Hs-DWVNDiiL~~~~~tl   88 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------------YIASMEHHS-DWVNDIILCGNGKTL   88 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccc-------------------hhhhhhhhH-hHHhhHHhhcCCCce
Confidence            44444 344569999999999999997332211100                   223466675 899999999999999


Q ss_pred             EEEeeCCCeEEEEEcCCCC--ce-eeecCCCCeEEEEE-ecCCCeEEEEecCCcEEEEECCCCce-----------eccc
Q 013347          227 ASASYESSSFTIWDVAQGL--GT-PIRRGFGGLSILKW-SPTGDYFFAAKFDGTFYLWETNTWTS-----------EPWS  291 (444)
Q Consensus       227 ~~~~~d~~~i~iwd~~~~~--~~-~~~~~~~~v~~~~~-sp~~~~l~~~~~d~~v~iwd~~~~~~-----------~~~~  291 (444)
                      ++++.|- +|++|+...+.  +. .+..|...|.|++. .++...+++|+-|+.|.+||++++..           ..+.
T Consensus        89 IS~SsDt-TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~  167 (735)
T KOG0308|consen   89 ISASSDT-TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG  167 (735)
T ss_pred             EEecCCc-eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC
Confidence            9999998 99999998773  33 36679999999999 77788889999999999999997732           1122


Q ss_pred             -cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEec
Q 013347          292 -STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYK  369 (444)
Q Consensus       292 -~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~  369 (444)
                       ++...+++++.++.|..++.|    +.-+.+++|+..          +...+..+.||. .|..+..++||+.++++|.
T Consensus       168 sG~k~siYSLA~N~t~t~ivsG----gtek~lr~wDpr----------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS  233 (735)
T KOG0308|consen  168 SGPKDSIYSLAMNQTGTIIVSG----GTEKDLRLWDPR----------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS  233 (735)
T ss_pred             CCCccceeeeecCCcceEEEec----CcccceEEeccc----------cccceeeeeccccceEEEEEcCCCCeEeecCC
Confidence             678889999999999777765    334667777643          456677788999 9999999999999999999


Q ss_pred             CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      |      |+|++||+...+.+     .++..|.+.|+++..+|+=+     .+-.|-.+|.|+.=+|.
T Consensus       234 D------gtIrlWdLgqQrCl-----~T~~vH~e~VWaL~~~~sf~-----~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  234 D------GTIRLWDLGQQRCL-----ATYIVHKEGVWALQSSPSFT-----HVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             C------ceEEeeecccccee-----eeEEeccCceEEEeeCCCcc-----eEEecCCCCcEEecccC
Confidence            9      99999999975554     56888999999998886532     35566677777765554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=2.5e-21  Score=177.40  Aligned_cols=237  Identities=15%  Similarity=0.206  Sum_probs=191.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--C-CeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--G-GRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~-~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ++++++.||+|++||+|..-|+++||++.. -.....+ ..|...|.|+.|+.-  + +.|++++.|.-|.+||+..   
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---  535 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---  535 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehh-hhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---
Confidence            699999999999999999999999999986 3333333 689999999999852  2 3355566689999999872   


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCC--Cceeee---
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQG--LGTPIR---  250 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~--~~~~~~---  250 (444)
                                           .+.++.++.+|. ..|+++.|.-+|  ..+++++.|. .| +|+....  ......   
T Consensus       536 ---------------------ny~l~qtld~HS-ssITsvKFa~~gln~~MiscGADk-si-mFr~~qk~~~g~~f~r~t  591 (1080)
T KOG1408|consen  536 ---------------------NYDLVQTLDGHS-SSITSVKFACNGLNRKMISCGADK-SI-MFRVNQKASSGRLFPRHT  591 (1080)
T ss_pred             ---------------------ccchhhhhcccc-cceeEEEEeecCCceEEEeccCch-hh-heehhccccCceeccccc
Confidence                                 345677888986 899999998877  6788999886 44 4554431  111111   


Q ss_pred             --cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          251 --RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       251 --~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                        ..+..++.++..|..+++++++.|+.|+|||+.+++..+ +.   .|.+..-.+...|.|.|+++++++ .++..+++
T Consensus       592 ~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-ktl~~~Df  670 (1080)
T KOG1408|consen  592 QTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-KTLCFVDF  670 (1080)
T ss_pred             cccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC-CceEEEEe
Confidence              124678999999999999999999999999999998843 33   577788899999999999988776 56777776


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .             .++++.+..||. .|+.+.|.+|-+.|++.+.|      |.|.||.+..
T Consensus       671 ~-------------sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD------gCIFvW~lp~  714 (1080)
T KOG1408|consen  671 V-------------SGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD------GCIFVWKLPL  714 (1080)
T ss_pred             c-------------cchhhhhhcCcchheeeeeecccchhheeecCC------ceEEEEECch
Confidence            4             578889999999 99999999999999999998      9999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6.2e-23  Score=188.02  Aligned_cols=245  Identities=15%  Similarity=0.249  Sum_probs=194.6

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL  192 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  192 (444)
                      +++.....-.+++|+....        ..|...|.++..-..++.++.++.|..+-+|.+....                
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----------------   61 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF--------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----------------   61 (825)
T ss_pred             ccceeeeeeccccccchhh--------hhhhhhhceeeeeccceeeccCCCceeeccccccCCc----------------
Confidence            3444445556778876531        3678888888886665666777778888899987322                


Q ss_pred             ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEE
Q 013347          193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAA  271 (444)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~  271 (444)
                               .+..+.+|. .+|.++.|+++..+|+.|+.+| +|++||++..+..+ +.+|...+.++.|+|-+.+++.|
T Consensus        62 ---------~i~S~~~he-spIeSl~f~~~E~Llaagsasg-tiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~g  130 (825)
T KOG0267|consen   62 ---------AITSLTGHE-SPIESLTFDTSERLLAAGSASG-TIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASG  130 (825)
T ss_pred             ---------hhheeeccC-CcceeeecCcchhhhcccccCC-ceeeeehhhhhhhhhhhccccCcceeeeccceEEeccc
Confidence                     223467785 8999999999999999999998 99999999887665 77888999999999999999999


Q ss_pred             ecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          272 KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       272 ~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      +.|..+.+||.+...+ ..+.+|...+..+.|+|+|++++.+++    +..+++|+..          .+..+..|..|.
T Consensus       131 Stdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e----d~tvki~d~~----------agk~~~ef~~~e  196 (825)
T KOG0267|consen  131 STDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE----DNTVKIWDLT----------AGKLSKEFKSHE  196 (825)
T ss_pred             cccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC----cceeeeeccc----------cccccccccccc
Confidence            9999999999995555 667789999999999999999997744    3455555432          456677888888


Q ss_pred             -ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347          351 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  417 (444)
Q Consensus       351 -~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~  417 (444)
                       .+..+.|+|..-++++|+.|      +++++||+++-+.+     .........|.+++|+|+|+..
T Consensus       197 ~~v~sle~hp~e~Lla~Gs~d------~tv~f~dletfe~I-----~s~~~~~~~v~~~~fn~~~~~~  253 (825)
T KOG0267|consen  197 GKVQSLEFHPLEVLLAPGSSD------RTVRFWDLETFEVI-----SSGKPETDGVRSLAFNPDGKIV  253 (825)
T ss_pred             ccccccccCchhhhhccCCCC------ceeeeeccceeEEe-----eccCCccCCceeeeecCCceee
Confidence             89999999999999999998      99999999974444     3344446779999999999863

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=6.7e-21  Score=172.48  Aligned_cols=282  Identities=11%  Similarity=0.115  Sum_probs=199.5

Q ss_pred             EEEEec---CCCeEEEEECCCeEEEEEccCCCCc----eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347          104 GVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       104 ~~~~sp---~g~~la~~~~dg~v~iw~~~~~~~~----~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ++.|++   ....||.+..||.|.++|.......    .......|.+.|..+.|.|....|+++++|.++++||++..+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            455554   3467888999999999998753111    112335799999999999976778888999999999998433


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc---------
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG---------  246 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~---------  246 (444)
                      ..                       -.+.+.+|. ..|.+++|.| +...|++|+.|| .|.|||++-...         
T Consensus       134 l~-----------------------G~~~~~GH~-~SvkS~cf~~~n~~vF~tGgRDg-~illWD~R~n~~d~~e~~~~~  188 (720)
T KOG0321|consen  134 LV-----------------------GGRLNLGHT-GSVKSECFMPTNPAVFCTGGRDG-EILLWDCRCNGVDALEEFDNR  188 (720)
T ss_pred             ee-----------------------cceeecccc-cccchhhhccCCCcceeeccCCC-cEEEEEEeccchhhHHHHhhh
Confidence            21                       122366775 8999999999 556788999998 999999874310         


Q ss_pred             -------------------eeeecCCCCeEE---EEEecCCCeEEEEec-CCcEEEEECCCCcee---------ccccC-
Q 013347          247 -------------------TPIRRGFGGLSI---LKWSPTGDYFFAAKF-DGTFYLWETNTWTSE---------PWSST-  293 (444)
Q Consensus       247 -------------------~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~---------~~~~~-  293 (444)
                                         ..-..+...+.+   +.+..|...||+++. |+.|++||+++....         .+..| 
T Consensus       189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s  268 (720)
T KOG0321|consen  189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS  268 (720)
T ss_pred             hhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence                               000112223333   445568888998887 999999999976541         12223 


Q ss_pred             --CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--c-eeEEEECCCCCEEEEEe
Q 013347          294 --SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--G-IEKIAWDASGERLAVSY  368 (444)
Q Consensus       294 --~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-v~~~~~spdg~~l~~~~  368 (444)
                        ...+.++.....|.++++.|. |+.|+.|++...           ...++..+.++.  . -..-..+||+.+|++|+
T Consensus       269 krs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~-----------s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS  336 (720)
T KOG0321|consen  269 KRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSL-----------SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS  336 (720)
T ss_pred             cceeeeEEEEecCCCCeEEEEec-CCcEEEEecccc-----------CcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence              234678888888999988776 577888887543           233344444443  1 12234689999999999


Q ss_pred             cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          369 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       369 ~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .|      ...++|.+.+-+.-    ...+.||.-.|++|+|.|..   .+..++ |.+|-++.+|.+
T Consensus       337 sd------~~ayiw~vs~~e~~----~~~l~Ght~eVt~V~w~pS~---~t~v~T-cSdD~~~kiW~l  390 (720)
T KOG0321|consen  337 SD------EQAYIWVVSSPEAP----PALLLGHTREVTTVRWLPSA---TTPVAT-CSDDFRVKIWRL  390 (720)
T ss_pred             CC------cceeeeeecCccCC----hhhhhCcceEEEEEeecccc---CCCcee-eccCcceEEEec
Confidence            99      89999999875433    44577999999999998852   334444 488999999987

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=8.4e-21  Score=163.13  Aligned_cols=301  Identities=17%  Similarity=0.249  Sum_probs=201.9

Q ss_pred             ccceEEEEEecCCC-eEEEEECCCeEEEEEccCC--CC---cee--EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDS--GK---DAC--ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus        99 ~~~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~--~~---~~~--~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw  170 (444)
                      ..+|..+.|.++.. .||+|+.|..|+||.++..  ++   ...  .....|...|+++.|+|+|..|++++.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            34689999999876 9999999999999999764  11   111  1224799999999999998777777777999999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-e
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I  249 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~  249 (444)
                      ..... .+.        ....-..-....|.....+++|. ..|..++|+|++.++++++.|+ .+++||+..+.... +
T Consensus        93 k~~~~-~~~--------~~d~e~~~~ke~w~v~k~lr~h~-~diydL~Ws~d~~~l~s~s~dn-s~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   93 KQGDV-RIF--------DADTEADLNKEKWVVKKVLRGHR-DDIYDLAWSPDSNFLVSGSVDN-SVRLWDVHAGQLLAIL  161 (434)
T ss_pred             EecCc-CCc--------cccchhhhCccceEEEEEecccc-cchhhhhccCCCceeeeeeccc-eEEEEEeccceeEeec
Confidence            87631 000        00000111133588999999986 8999999999999999999998 99999999998877 4


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec------cc--------------cC----CCceeEEEECCC
Q 013347          250 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--------------ST----SGFVTGATWDPE  305 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~------~~--------------~~----~~~v~~~~~sp~  305 (444)
                      ..|...+..++|.|-++++++-+.|...+.+.+...+...      +.              -|    ......++|+|+
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd  241 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD  241 (434)
T ss_pred             cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence            5678899999999999999999888877777665433210      00              11    123467889999


Q ss_pred             CCEEEEEEcC---CceE--EEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEEC------------------CCC
Q 013347          306 GRMILLAFAG---SLTL--GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD------------------ASG  361 (444)
Q Consensus       306 g~~l~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s------------------pdg  361 (444)
                      |.++++...-   ++..  +.-.+.      ..+.   ...++..+.... +...+.|+                  |-+
T Consensus       242 G~llvtPag~~~~g~~~~~n~tYvf------srk~---l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr  312 (434)
T KOG1009|consen  242 GSLLVTPAGLFKVGGGVFRNTSYVF------SRKD---LKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR  312 (434)
T ss_pred             CcEEEcccceeeeCCceeeceeEee------cccc---ccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence            9998864210   0111  111111      0000   111122222222 23333333                  333


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee-eCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI-RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      -.+|.+..       +.++|||.++-..+     ..+ .-|-..|+.++||+||.+     |++...||...+..+
T Consensus       313 lvfaiAt~-------~svyvydtq~~~P~-----~~v~nihy~~iTDiaws~dg~~-----l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  313 LVFAIATK-------NSVYVYDTQTLEPL-----AVVDNIHYSAITDIAWSDDGSV-----LLVSSTDGFCSLVTF  371 (434)
T ss_pred             eEEEEeec-------ceEEEeccccccce-----EEEeeeeeeeecceeecCCCcE-----EEEeccCCceEEEEE
Confidence            44556555       58999999874433     222 347788999999999876     777777887776543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=1.4e-18  Score=159.34  Aligned_cols=280  Identities=13%  Similarity=0.125  Sum_probs=181.4

Q ss_pred             EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeecccccccccccc
Q 013347          116 FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSR  194 (444)
Q Consensus       116 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  194 (444)
                      +...++.|++|++.+.+.........+.+....++++|+++.|++++. ++.|.+|+++..+....              
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~--------------   72 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF--------------   72 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE--------------
Confidence            346789999999975343333222234566788999999887777654 68999999973222111              


Q ss_pred             CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-c---eeeecCCCCeEEEEEecCCCeEEE
Q 013347          195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-G---TPIRRGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~---~~~~~~~~~v~~~~~sp~~~~l~~  270 (444)
                              ......  ......++++|++++|++++...+.|.+|++.+.. .   .....+......++++|+++++++
T Consensus        73 --------~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v  142 (330)
T PRK11028         73 --------AAESPL--PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV  142 (330)
T ss_pred             --------eeeecC--CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE
Confidence                    111111  13567899999999999888644599999997432 1   122223345677899999998855


Q ss_pred             E-ecCCcEEEEECCCCc-eec-----c-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347          271 A-KFDGTFYLWETNTWT-SEP-----W-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  342 (444)
Q Consensus       271 ~-~~d~~v~iwd~~~~~-~~~-----~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      + ..++.|.+||+.+.. ...     . .........++|+|+|++++++...+..+..|++......         ...
T Consensus       143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~---------~~~  213 (330)
T PRK11028        143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE---------IEC  213 (330)
T ss_pred             eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC---------EEE
Confidence            4 456899999997632 211     0 1123446789999999999988777788888887531110         011


Q ss_pred             cccc-------ccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          343 IVSL-------TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       343 ~~~~-------~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                      +.++       .+......+.++|+|++|+++....     +.|.+|++...... ...+..+.. ...+..++|+|||+
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-----~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~~dg~  286 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-----SLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNIDHSGK  286 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-----CeEEEEEEeCCCCe-EEEeEEEec-cccCCceEECCCCC
Confidence            1111       1111334688999999999986542     89999999654321 222333332 24567899999999


Q ss_pred             CCCCceEEEEeccceeeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      +    +.+.+..++.|.+|.+...
T Consensus       287 ~----l~va~~~~~~v~v~~~~~~  306 (330)
T PRK11028        287 Y----LIAAGQKSHHISVYEIDGE  306 (330)
T ss_pred             E----EEEEEccCCcEEEEEEcCC
Confidence            8    3334455889999987543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.87  E-value=3.6e-20  Score=155.13  Aligned_cols=295  Identities=16%  Similarity=0.216  Sum_probs=195.8

Q ss_pred             cceEEEEEec----CCCeEEEEECCCeEEEEEccCCCC--ceeE-EecCCCCCeEEEEEeeCCC----eEEEEecCCcEE
Q 013347          100 VDLQGVSWHQ----HKHIVAFISGSTQVIVRDYEDSGK--DACI-LTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC  168 (444)
Q Consensus       100 ~~v~~~~~sp----~g~~la~~~~dg~v~iw~~~~~~~--~~~~-~~~~~~~~v~~l~~s~~~~----~ll~~~~dg~v~  168 (444)
                      .+|..++|++    +...+++......+.+|.....+.  .... ....|....+.++|+-+..    .++++|.-|.|+
T Consensus        39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIr  118 (385)
T KOG1034|consen   39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIR  118 (385)
T ss_pred             CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEE
Confidence            3588888885    233333334566889999886541  1111 2234788889999976532    356666679999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCce
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      |.|+...                         .+...+.+|. ..|+.+.+.|+. +++++++.|. .|++|++++..++
T Consensus       119 Vid~~~~-------------------------~~~~~~~ghG-~sINeik~~p~~~qlvls~SkD~-svRlwnI~~~~Cv  171 (385)
T KOG1034|consen  119 VIDVVSG-------------------------QCSKNYRGHG-GSINEIKFHPDRPQLVLSASKDH-SVRLWNIQTDVCV  171 (385)
T ss_pred             EEecchh-------------------------hhccceeccC-ccchhhhcCCCCCcEEEEecCCc-eEEEEeccCCeEE
Confidence            9999832                         3455678885 899999999954 6888999998 9999999999998


Q ss_pred             eeec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec----------------c-------------ccCC
Q 013347          248 PIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----------------W-------------SSTS  294 (444)
Q Consensus       248 ~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----------------~-------------~~~~  294 (444)
                      .+.+    |...|.++.|+++|.+|++++.|..+++|++...+...                +             .-|.
T Consensus       172 ~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr  251 (385)
T KOG1034|consen  172 AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR  251 (385)
T ss_pred             EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence            7654    77899999999999999999999999999998433210                0             0244


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC--CcccccccccCC-ceeE--EEECCCCCEEEEEec
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPDIVSLTGSQ-GIEK--IAWDASGERLAVSYK  369 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~v~~--~~~spdg~~l~~~~~  369 (444)
                      ..|.|+.|-  |.+++ +-+.++.+..|........+. .+.+.  ....+..+.-.. .|+-  .+|.|-+++||.|..
T Consensus       252 nyVDCvrw~--gd~il-SkscenaI~~w~pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  252 NYVDCVRWF--GDFIL-SKSCENAIVCWKPGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             chHHHHHHH--hhhee-ecccCceEEEEecchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence            455555553  35555 333334555555421111111 01010  111223333333 4444  556788899999988


Q ss_pred             CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .      |.|++||++..+......+ .-......|...+||.||.+     |.+..++|.|+-|+..
T Consensus       328 ~------g~v~vwdL~~~ep~~~ttl-~~s~~~~tVRQ~sfS~dgs~-----lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  328 S------GKVYVWDLDNNEPPKCTTL-THSKSGSTVRQTSFSRDGSI-----LVLVCDDGTVWRWDRV  383 (385)
T ss_pred             C------CcEEEEECCCCCCccCceE-EeccccceeeeeeecccCcE-----EEEEeCCCcEEEEEee
Confidence            8      9999999997665311111 11122567899999999876     6666799999999864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=5.2e-20  Score=151.66  Aligned_cols=286  Identities=16%  Similarity=0.263  Sum_probs=201.3

Q ss_pred             ceEEEEEec---CCCeEEEEE----CCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCC----eEEEEecCCcEE
Q 013347          101 DLQGVSWHQ---HKHIVAFIS----GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp---~g~~la~~~----~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~----~ll~~~~dg~v~  168 (444)
                      .+.++.|+.   ...+||.|+    ..+.|.|-.+... +.........|.-+++.+.|.|+..    .|+++ ++..+|
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LR  124 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDFLR  124 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-ccCeEE
Confidence            578889984   345788887    5677888777654 2333333347899999999999853    24444 456799


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCC--
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL--  245 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~--  245 (444)
                      +|.+............                 +...-..+...++++..|+. +-+++.+++-|- +..|||++++.  
T Consensus       125 lWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT-TCTiWdie~~~~~  186 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT-TCTIWDIETGVSG  186 (364)
T ss_pred             EEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeecccC-eEEEEEEeecccc
Confidence            9999843222111110                 01111223347899999987 788999999997 99999999973  


Q ss_pred             --ceeeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceeccc----cCCCceeEEEECCCC-CEEEEEEcCCc
Q 013347          246 --GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEG-RMILLAFAGSL  317 (444)
Q Consensus       246 --~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~~----~~~~~v~~~~~sp~g-~~l~~~~~~~~  317 (444)
                        ..++..|..+|..++|...+. .|++.+.||.||+||++..+..++.    ....+...++|+++. +++++-..+..
T Consensus       187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence              345788999999999998654 5699999999999999987663322    224567889999866 45555445556


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCe-EEEEE
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSL  394 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~-~~~~~  394 (444)
                      .+.+++++.            ...++..+.+|. .|+.++|.|.. ..|++++.|      ..+.+||+..... ....+
T Consensus       267 ~V~iLDiR~------------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD------~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  267 KVVILDIRV------------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD------CQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             eEEEEEecC------------CCcceehhhcCcccccceEecCCCCceeeecCCc------ceEEEEecccccccCCCCc
Confidence            677777653            456678899999 99999999975 689999888      8999999986433 11223


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEecc
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS  428 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~  428 (444)
                      +-.+. -+..|..+.|++.    ....+++|+.+
T Consensus       329 ilay~-a~~EVNqi~Ws~~----~~Dwiai~~~k  357 (364)
T KOG0290|consen  329 ILAYT-AGGEVNQIQWSSS----QPDWIAICFGK  357 (364)
T ss_pred             hhhhh-ccceeeeeeeccc----CCCEEEEEecC
Confidence            32333 3567899999963    34468888764

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.2e-20  Score=162.28  Aligned_cols=233  Identities=11%  Similarity=0.136  Sum_probs=185.6

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ...|.|++-+|+|.+|+.|+..|.+++|.+.+ |....++ ..|-..|+++.|+.||..+++++.||.|.+|.+..--..
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            34699999999999999888999999999998 6766666 699999999999999999999999999999998621100


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL  256 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v  256 (444)
                                      .++......+.+..|. -.|+++...+.  ..+|++++.|. ++++||+..+........+..+
T Consensus       159 ----------------~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~-t~k~wdlS~g~LLlti~fp~si  220 (476)
T KOG0646|consen  159 ----------------DNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDR-TIKLWDLSLGVLLLTITFPSSI  220 (476)
T ss_pred             ----------------ccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCc-eEEEEEeccceeeEEEecCCcc
Confidence                            0011223456778885 89999988764  45799999998 9999999999888777788999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCc-----------------eeccccCCC--ceeEEEECCCCCEEEEEEcCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWT-----------------SEPWSSTSG--FVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-----------------~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      .+++.+|-++.++.|+.+|.|.+.++.+..                 ...+.+|.+  .|+|++++-||..|++| +.++
T Consensus       221 ~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG-d~dg  299 (476)
T KOG0646|consen  221 KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG-DEDG  299 (476)
T ss_pred             eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee-CCCC
Confidence            999999999999999999999988875432                 122447777  89999999999998855 6668


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCccccccccc-CCceeEEEECCCCCEEE
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLA  365 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~  365 (444)
                      .+.+|++.             ..++++++.. ..+|+.+.+.|--+-..
T Consensus       300 ~VcvWdi~-------------S~Q~iRtl~~~kgpVtnL~i~~~~~~~~  335 (476)
T KOG0646|consen  300 KVCVWDIY-------------SKQCIRTLQTSKGPVTNLQINPLERGII  335 (476)
T ss_pred             CEEEEecc-------------hHHHHHHHhhhccccceeEeecccccee
Confidence            88888875             3466777763 33889998876543333

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=3.8e-20  Score=162.96  Aligned_cols=269  Identities=15%  Similarity=0.144  Sum_probs=193.8

Q ss_pred             EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe--cCCcEEEEecCCCCCcceeeccccccccccc
Q 013347          116 FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGICIWAPSYPGNAASVRSGAASFLGALS  193 (444)
Q Consensus       116 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  193 (444)
                      .++....++|||+.......+.........+.++.|+.. ..|++++  .|..+++|.-..+  ...+.           
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~-n~lvvas~~gdk~~~~~~K~g~--~~~Vp-----------   72 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRR-NFLVVASMAGDKVMRIKEKDGK--TPEVP-----------   72 (673)
T ss_pred             eeccCCceEEeecccccCccccccCCCCCcceeeecccc-ceEEEeecCCceeEEEecccCC--CCccc-----------
Confidence            345555789999987544444443333445999999987 4455544  4688999987632  11111           


Q ss_pred             cCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEe
Q 013347          194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAK  272 (444)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~  272 (444)
                              .+..+.+   ..-.|++......++++++..+ .|+|||++...+.+ +..|+..|+++.++....+|++++
T Consensus        73 --------~~~k~~g---d~~~Cv~~~s~S~y~~sgG~~~-~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs  140 (673)
T KOG4378|consen   73 --------RVRKLTG---DNAFCVACASQSLYEISGGQSG-CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS  140 (673)
T ss_pred             --------eeecccc---chHHHHhhhhcceeeeccCcCc-eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec
Confidence                    1112222   2345555555668999999998 99999999665554 667899999999999999999999


Q ss_pred             cCCcEEEEECCCCceeccccC--CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          273 FDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       273 ~d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      ..|.|.|..+.++....-..+  ...|.-+.|+|..+.++...++++.+..|++...            .+...-...|.
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~------------sp~~~~~~~Hs  208 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM------------SPIFHASEAHS  208 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC------------Ccccchhhhcc
Confidence            999999999998876443333  4456789999999999988888777777775332            12223344677


Q ss_pred             -ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecc
Q 013347          351 -GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS  428 (444)
Q Consensus       351 -~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~  428 (444)
                       +...++|+|.. .+|++.+.|      ..|.+||.......     ..+. ...+...|+|+++|.+     |++|.+.
T Consensus       209 AP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~-----~~l~-y~~Plstvaf~~~G~~-----L~aG~s~  271 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYD------KKINIYDIRSQAST-----DRLT-YSHPLSTVAFSECGTY-----LCAGNSK  271 (673)
T ss_pred             CCcCcceecCCccceEEEeccc------ceEEEeeccccccc-----ceee-ecCCcceeeecCCceE-----EEeecCC
Confidence             88999999965 667777777      99999999875543     1222 2456789999999876     9999999


Q ss_pred             ceeeeeeeeee
Q 013347          429 GFCCTYPLIFR  439 (444)
Q Consensus       429 g~i~~~~~~~~  439 (444)
                      |+|.+|++.-.
T Consensus       272 G~~i~YD~R~~  282 (673)
T KOG4378|consen  272 GELIAYDMRST  282 (673)
T ss_pred             ceEEEEecccC
Confidence            99999998754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=9.8e-20  Score=150.33  Aligned_cols=229  Identities=16%  Similarity=0.193  Sum_probs=173.2

Q ss_pred             cCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEecCCCCCcc--eeeccccccccccccCCCCceEE-EEEeeccCCCceE
Q 013347          140 SDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYPGNAA--SVRSGAASFLGALSRGPGTRWTL-VDFLRSQNGEQIT  215 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~  215 (444)
                      ..|.+.|.++...+. |+++++++.||.|.+||++......  -+....             ...+ ...-.+|. -.|.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~-------------~c~v~~~h~~~Hk-y~is  105 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH-------------KCIVAKQHENGHK-YAIS  105 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe-------------eeeccccCCccce-eeee
Confidence            478899999999875 5667888889999999998432110  000000             0000 11123443 6899


Q ss_pred             EEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC---CCeEEEEecCCcEEEEECCCCce-ecc
Q 013347          216 ALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS-EPW  290 (444)
Q Consensus       216 ~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd~~~~~~-~~~  290 (444)
                      .+.|-| |...+.+++.|. ++++||..+-+....+..++.|.+-+|+|-   .-++++|..+-.|++.|+.+|.. ..+
T Consensus       106 s~~WyP~DtGmFtssSFDh-tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L  184 (397)
T KOG4283|consen  106 SAIWYPIDTGMFTSSSFDH-TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL  184 (397)
T ss_pred             eeEEeeecCceeecccccc-eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence            999988 667888899998 999999999888888888899999999994   33567888888999999999998 678


Q ss_pred             ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc---CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEE
Q 013347          291 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL---DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV  366 (444)
Q Consensus       291 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~  366 (444)
                      .+|...|.++.|+|..++++++++.++.++.|+++.....+   +.+-. ...+.+++-..|. .|..++|+.||.++++
T Consensus       185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeeecccchhhhh
Confidence            89999999999999999999888888888888887653322   22211 1223334455666 8999999999999999


Q ss_pred             EecCCCccccceEEEEEcCCCCeE
Q 013347          367 SYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ++.|      ..+++|+..+|+..
T Consensus       264 ~gtd------~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  264 CGTD------DRIRVWNMESGRNT  281 (397)
T ss_pred             ccCc------cceEEeecccCccc
Confidence            9998      89999999877643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=5.3e-20  Score=168.31  Aligned_cols=223  Identities=15%  Similarity=0.176  Sum_probs=177.8

Q ss_pred             EEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347          105 VSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       105 ~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      +++-+ ++-.|++|+.|+++.+|.... ..+..+ ..+|...|.+++...++ .+++++.|.++++|...          
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~-LkgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~----------  130 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYT-LKGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIG----------  130 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCC-CCchhh-hhccccceeeeecCCcC-ceEecccccceEEecch----------
Confidence            55554 455688999999999999986 344444 47999999999988884 49999999999999987          


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP  263 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp  263 (444)
                                       .+...+.+|. ..|.+++.-|++ .+++|+.|. +|++|.-. .....+.+|...|+.+++-+
T Consensus       131 -----------------~l~~~l~gH~-asVWAv~~l~e~-~~vTgsaDK-tIklWk~~-~~l~tf~gHtD~VRgL~vl~  189 (745)
T KOG0301|consen  131 -----------------ELVYSLQGHT-ASVWAVASLPEN-TYVTGSADK-TIKLWKGG-TLLKTFSGHTDCVRGLAVLD  189 (745)
T ss_pred             -----------------hhhcccCCcc-hheeeeeecCCC-cEEeccCcc-eeeeccCC-chhhhhccchhheeeeEEec
Confidence                             3455688896 899999999988 788999998 99999862 22344778999999999997


Q ss_pred             CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc
Q 013347          264 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  343 (444)
Q Consensus       264 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      ++ .|++++.||.|++|++.........+|...+++++..+++..++++ ++++++++|.               ...+.
T Consensus       190 ~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~-gEDrtlriW~---------------~~e~~  252 (745)
T KOG0301|consen  190 DS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVST-GEDRTLRIWK---------------KDECV  252 (745)
T ss_pred             CC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEe-cCCceEEEee---------------cCceE
Confidence            65 5889999999999999666567888999999999988887877755 4555555554               23556


Q ss_pred             cccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          344 VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       344 ~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +.++... .|+++.+-++|. |++|++|      |.||||...
T Consensus       253 q~I~lPttsiWsa~~L~NgD-Ivvg~SD------G~VrVfT~~  288 (745)
T KOG0301|consen  253 QVITLPTTSIWSAKVLLNGD-IVVGGSD------GRVRVFTVD  288 (745)
T ss_pred             EEEecCccceEEEEEeeCCC-EEEeccC------ceEEEEEec
Confidence            6666666 899999999998 5566777      999999765

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-19  Score=169.38  Aligned_cols=301  Identities=17%  Similarity=0.192  Sum_probs=218.8

Q ss_pred             eEEEEEecCC--CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g--~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      |+++ ++|..  +.++.|+.+|.+.||++.+ ++....+ .++...|+++.=+|-=.-++.+..+|+|.|+++...+...
T Consensus       162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt-~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~  238 (910)
T KOG1539|consen  162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRT-GKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM  238 (910)
T ss_pred             eeeE-ecchhheeeEEEeecCCcEEEEEecc-CcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence            5544 45543  6788899999999999998 6777666 5888999999999974455555668999999999766555


Q ss_pred             eeeccccccccccccCCCCc--------------eE-----EEEEee-ccCCCceEEEEEccCCCeEEEEeeCCCeEEEE
Q 013347          180 SVRSGAASFLGALSRGPGTR--------------WT-----LVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIW  239 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~--------------~~-----~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iw  239 (444)
                      .+... .+.+..+++..++.              |.     +...++ .| .+.|....|-|....+++++.|+ .+++|
T Consensus       239 sFk~d-~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah-~~sv~~~~fl~~epVl~ta~~Dn-Slk~~  315 (910)
T KOG1539|consen  239 SFKQD-WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH-YGSVTGATFLPGEPVLVTAGADN-SLKVW  315 (910)
T ss_pred             EEEcc-ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc-cCCcccceecCCCceEeeccCCC-ceeEE
Confidence            54432 33344444433322              22     222333 44 46788888888888888888886 77766


Q ss_pred             EcCCC---------------------------------------------------------------------------
Q 013347          240 DVAQG---------------------------------------------------------------------------  244 (444)
Q Consensus       240 d~~~~---------------------------------------------------------------------------  244 (444)
                      =..++                                                                           
T Consensus       316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~  395 (910)
T KOG1539|consen  316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL  395 (910)
T ss_pred             EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence            44321                                                                           


Q ss_pred             ------------------------------------C--ceeeecCC------CCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347          245 ------------------------------------L--GTPIRRGF------GGLSILKWSPTGDYFFAAKFDGTFYLW  280 (444)
Q Consensus       245 ------------------------------------~--~~~~~~~~------~~v~~~~~sp~~~~l~~~~~d~~v~iw  280 (444)
                                                          +  ......+.      ..+.+++.++.|++.+.|...|.|-+|
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f  475 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF  475 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence                                                0  00111122      467899999999999999999999999


Q ss_pred             ECCCCceec-c---ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEE
Q 013347          281 ETNTWTSEP-W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  356 (444)
Q Consensus       281 d~~~~~~~~-~---~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  356 (444)
                      ++++|-... +   ..|.++|++++....++.+++++.+ +.+..|++..             ...+..+.-...+..+.
T Consensus       476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~-Gilkfw~f~~-------------k~l~~~l~l~~~~~~iv  541 (910)
T KOG1539|consen  476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGAD-GILKFWDFKK-------------KVLKKSLRLGSSITGIV  541 (910)
T ss_pred             EcccCeeecccccCccccCceeEEEecCCCceEEEccCc-ceEEEEecCC-------------cceeeeeccCCCcceee
Confidence            999987743 3   4899999999999998888877443 4444444422             22334444344678888


Q ss_pred             ECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          357 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       357 ~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .+.....++.+..|      -.|+++|..+.++.     +.+.||++.|++++||||||+     |..+.-|++|..|++
T Consensus       542 ~hr~s~l~a~~~dd------f~I~vvD~~t~kvv-----R~f~gh~nritd~~FS~DgrW-----lisasmD~tIr~wDl  605 (910)
T KOG1539|consen  542 YHRVSDLLAIALDD------FSIRVVDVVTRKVV-----REFWGHGNRITDMTFSPDGRW-----LISASMDSTIRTWDL  605 (910)
T ss_pred             eeehhhhhhhhcCc------eeEEEEEchhhhhh-----HHhhccccceeeeEeCCCCcE-----EEEeecCCcEEEEec
Confidence            88888889988888      89999999987776     678899999999999999998     667778899999998


Q ss_pred             ee
Q 013347          437 IF  438 (444)
Q Consensus       437 ~~  438 (444)
                      ..
T Consensus       606 pt  607 (910)
T KOG1539|consen  606 PT  607 (910)
T ss_pred             cC
Confidence            64

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=1.1e-20  Score=160.01  Aligned_cols=265  Identities=14%  Similarity=0.170  Sum_probs=182.8

Q ss_pred             CcccccccccccccccccccCCCCccC--cc--ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCC
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHL--LP--EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD  145 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~--~~--~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  145 (444)
                      ++.|..+..|.-.+.++.+....-..+  +.  ..-|+.++++.  ..+++++.|.+|+.|.++.  .....+  .....
T Consensus        76 p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~--~p~~ti--lg~s~  149 (433)
T KOG0268|consen   76 PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG--PPLHTI--LGKSV  149 (433)
T ss_pred             cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC--Ccceee--ecccc
Confidence            344455555655555555544432111  11  12488888887  6788889999999999885  344433  23445


Q ss_pred             eEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CC
Q 013347          146 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GR  224 (444)
Q Consensus       146 v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~  224 (444)
                      +..+.-+..+..++++|  ..|.|||.........+.-+                          ...|.++.|+|- -.
T Consensus       150 ~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG--------------------------~Dti~svkfNpvETs  201 (433)
T KOG0268|consen  150 YLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWG--------------------------ADSISSVKFNPVETS  201 (433)
T ss_pred             ccccccccccccccccC--ceeeecccccCCccceeecC--------------------------CCceeEEecCCCcch
Confidence            66666655534444443  46889999855544444333                          368999999994 45


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEE
Q 013347          225 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATW  302 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~  302 (444)
                      .|++++.|+ .|.+||++++.........-.-..++|+|.+-.|++|++|..++.||++.-+.  ....+|.+.|.++.|
T Consensus       202 ILas~~sDr-sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdf  280 (433)
T KOG0268|consen  202 ILASCASDR-SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDF  280 (433)
T ss_pred             heeeeccCC-ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEecc
Confidence            677777897 99999999988776555556677899999888889999999999999987554  456689999999999


Q ss_pred             CCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          303 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       303 sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                      ||.|+-+++|+    .+..+++......        ....+---+--..|.++.||.|.+|+++||.|      +.|++|
T Consensus       281 sptG~Efvsgs----yDksIRIf~~~~~--------~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd------~nvRlW  342 (433)
T KOG0268|consen  281 SPTGQEFVSGS----YDKSIRIFPVNHG--------HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD------GNVRLW  342 (433)
T ss_pred             CCCcchhcccc----ccceEEEeecCCC--------cchhhhhHhhhheeeEEEEeccccEEEecCCC------cceeee
Confidence            99999999773    3344444332110        01111000011169999999999999999998      999999


Q ss_pred             EcCCC
Q 013347          383 DARRT  387 (444)
Q Consensus       383 d~~~~  387 (444)
                      .....
T Consensus       343 ka~As  347 (433)
T KOG0268|consen  343 KAKAS  347 (433)
T ss_pred             ecchh
Confidence            87643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=2.2e-19  Score=164.30  Aligned_cols=305  Identities=18%  Similarity=0.266  Sum_probs=208.3

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCCC---eEEEEECCCeEEEEEccCCCCceeEEe-cCCCCCeE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVK  147 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~la~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~v~  147 (444)
                      .....|.||.++                  |+|+.|-|+.+   .+++|+.|+.|.+|.+.. ....++.. .+|...  
T Consensus        45 ~i~t~l~GH~a~------------------VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~-~~~~~i~~~~g~~~~--  103 (764)
T KOG1063|consen   45 LIVTTLDGHVAR------------------VNCVHWLPTSEIVAEMVSGDSDGRVILWKLRD-EYLIKIYTIQGHCKE--  103 (764)
T ss_pred             eeEEeccCCccc------------------eEEEEEcccccccceEEEccCCCcEEEEEEee-hheEEEEeecCccee--
Confidence            345678888776                  99999999887   899999999999999995 33333333 244544  


Q ss_pred             EEEEeeCCCeEEEE-ecCCcEEEEecCCCC--C--cceeec---------------------cccccccccccCCCCceE
Q 013347          148 VLEWRPNGGRSLSV-GCKGGICIWAPSYPG--N--AASVRS---------------------GAASFLGALSRGPGTRWT  201 (444)
Q Consensus       148 ~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~--~--~~~~~~---------------------~~~~~~~~~~~~~~~~~~  201 (444)
                      ++++... ....++ +.|+.+.+||.+..+  .  ...+..                     +.......+.....+++.
T Consensus       104 ~~cv~a~-~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~  182 (764)
T KOG1063|consen  104 CVCVVAR-SSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFA  182 (764)
T ss_pred             EEEEEee-eeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCccee
Confidence            4445544 233333 678999999995333  0  000000                     000001112222245677


Q ss_pred             EEEEeeccCCCceEEEEEccCCC---eEEEEeeCCCeEEEEEcCCCC------------------------ce-------
Q 013347          202 LVDFLRSQNGEQITALSWGPDGR---YLASASYESSSFTIWDVAQGL------------------------GT-------  247 (444)
Q Consensus       202 ~~~~~~~~~~~~v~~~~~sp~~~---~l~~~~~d~~~i~iwd~~~~~------------------------~~-------  247 (444)
                      .+..+.||. ..|.+++|...+.   +|+++++|. .|+||.+.-+.                        ..       
T Consensus       183 ~v~el~GH~-DWIrsl~f~~~~~~~~~laS~SQD~-yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e  260 (764)
T KOG1063|consen  183 RVAELEGHT-DWIRSLAFARLGGDDLLLASSSQDR-YIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE  260 (764)
T ss_pred             EEEEeeccc-hhhhhhhhhccCCCcEEEEecCCce-EEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence            888999996 8999999987444   788999998 99999875321                        00       


Q ss_pred             -eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-----c---cccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          248 -PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----P---WSSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       248 -~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-----~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                       .+.+|...|.++.|+|.+..|++++.|.++.+|...+..-.     .   +.+........-|+|++..+++-    ++
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~----g~  336 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH----GR  336 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe----cc
Confidence             12368899999999999989999999999999987665321     1   12334457889999999887754    23


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  397 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~  397 (444)
                      -+-|++|..   .+..    .......+.||. .|.+++|+|.|.+|.+.+.|      .+-|||-.-..+. ....+..
T Consensus       337 ~Gg~hlWkt---~d~~----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~D------QTTRlFa~wg~q~-~wHEiaR  402 (764)
T KOG1063|consen  337 TGGFHLWKT---KDKT----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLD------QTTRLFARWGRQQ-EWHEIAR  402 (764)
T ss_pred             cCcEEEEec---cCcc----ceeeccccccccccceeeeecCCCCEEEEeccc------cceeeeccccccc-ceeeecc
Confidence            355666651   1111    223445667888 99999999999999999999      8889987663332 2444555


Q ss_pred             eeCCCCCCcceeeee-CCCCCC
Q 013347          398 IRGPGDNPKPVAFSF-HDKFKQ  418 (444)
Q Consensus       398 ~~~~~~~i~~v~~sp-dg~~~~  418 (444)
                      -+-|+..++|++|-+ +-+|..
T Consensus       403 PQiHGyDl~c~~~vn~~~~FVS  424 (764)
T KOG1063|consen  403 PQIHGYDLTCLSFVNEDLQFVS  424 (764)
T ss_pred             cccccccceeeehccCCceeee
Confidence            567888899999987 666643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=1.2e-19  Score=149.49  Aligned_cols=280  Identities=15%  Similarity=0.195  Sum_probs=201.0

Q ss_pred             eEEEEE----CCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEeeCCCeEEEEecC--------CcEEEEecCCCCCcc
Q 013347          113 IVAFIS----GSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GGICIWAPSYPGNAA  179 (444)
Q Consensus       113 ~la~~~----~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--------g~v~iw~~~~~~~~~  179 (444)
                      .+++|.    .|+.|.+.+++..+. ........|.+.|+.++-+|-..+++++...        ..+.||.+..+....
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            444554    678899988886532 2233334778999999999988888877643        346799987443321


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-e-ee-----cC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-P-IR-----RG  252 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~-~~-----~~  252 (444)
                                      ....|.++..+....-+.|.|+.|.|++..+++-. |. .|.+|++.....+ . +.     .+
T Consensus       108 ----------------~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn-~i~l~~l~ess~~vaev~ss~s~e~  169 (370)
T KOG1007|consen  108 ----------------NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DN-NIVLWSLDESSKIVAEVLSSESAEM  169 (370)
T ss_pred             ----------------ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cC-ceEEEEcccCcchheeecccccccc
Confidence                            12234455556533236899999999999998776 54 8999999887552 1 11     13


Q ss_pred             CCCeEEEEEec--CCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          253 FGGLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       253 ~~~v~~~~~sp--~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      ....++-+|+|  +++.+++.+ |+++..||+++.+...  -..|...|..+.|+|+.+++++++++++.++.|+.+.  
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~--  246 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK--  246 (370)
T ss_pred             cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC--
Confidence            45677889999  788887765 8899999999877632  3378889999999999999999999999888888754  


Q ss_pred             CCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCC------------------
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTP------------------  388 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~------------------  388 (444)
                                ...+++++.+|. .|+++.|+|.. ++|.+++.|      ..|.+|...+-.                  
T Consensus       247 ----------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD------s~V~Lsca~svSSE~qi~~~~dese~e~~d  310 (370)
T KOG1007|consen  247 ----------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD------SAVNLSCASSVSSEQQIEFEDDESESEDED  310 (370)
T ss_pred             ----------CCccccccCCCceEEEEEEecCccceEEEecCCC------ceeEEEeccccccccccccccccccCcchh
Confidence                      456788899999 99999999964 778888888      889999653210                  


Q ss_pred             ------eEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeee
Q 013347          389 ------LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  433 (444)
Q Consensus       389 ------~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~  433 (444)
                            .+....+.++..|.+.|++++||.-.-+    +.+.-.=||++.+
T Consensus       311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPW----iFASLSYDGRviI  357 (370)
T KOG1007|consen  311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPW----IFASLSYDGRVII  357 (370)
T ss_pred             hHHhcccccccccccccccccceEEEeeccCCCe----eEEEeccCceEEe
Confidence                  1112234567889999999999975444    2222223677764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3e-19  Score=168.40  Aligned_cols=245  Identities=15%  Similarity=0.190  Sum_probs=186.8

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC-CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..|...-+.++|.|+|..+++++.||.|++|+.... ..+..+..                         + ...|.+++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------------------------~-g~~v~~ia   63 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------------------------S-GELVSSIA   63 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------------------------c-CceeEEEe
Confidence            378888999999999999999999999999998754 33333321                         1 25677776


Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCc
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGF  296 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~  296 (444)
                      .  ++.+|++++.++ +|.+|.+..++... +....-++++++|+-+|++++.|+.|-.|++.++..... ..+.+|.++
T Consensus        64 ~--~s~~f~~~s~~~-tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   64 C--YSNHFLTGSEQN-TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             e--cccceEEeeccc-eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence            5  455899999998 99999999987764 445678899999999999999999999999999987666 668899999


Q ss_pred             eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc-cccc--CCceeEEEECCCCCEEEEEecCCCc
Q 013347          297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTG--SQGIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      |.++.|+|++++||++. .++.+.+|++.+..-..       ....+. ....  ...+..++|+|+|..+++...|   
T Consensus       141 Vl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~-------tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d---  209 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSK-------TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD---  209 (933)
T ss_pred             eeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhh-------hcccCCccccccccceeeeeeecCCCCeEEeeccC---
Confidence            99999999999999764 44777777765421100       000000 0111  1157789999998777777777   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeC--CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                         +.|++|+..+....     ..++.  +...+..+.|||+|+|     ||.+.-+|.|.+|+.-
T Consensus       210 ---~~Vkvy~r~~we~~-----f~Lr~~~~ss~~~~~~wsPnG~Y-----iAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  210 ---NTVKVYSRKGWELQ-----FKLRDKLSSSKFSDLQWSPNGKY-----IAASTLDGQILVWNVD  262 (933)
T ss_pred             ---CeEEEEccCCceeh-----eeecccccccceEEEEEcCCCcE-----EeeeccCCcEEEEecc
Confidence               89999999986654     33442  3455889999999998     7777779999999865

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.2e-19  Score=157.80  Aligned_cols=240  Identities=17%  Similarity=0.284  Sum_probs=173.7

Q ss_pred             EEEEEec-------CCCeEEEEECCCeEEEEEccCCCCc-ee------------------EEecCCCCCeEEEEEeeCCC
Q 013347          103 QGVSWHQ-------HKHIVAFISGSTQVIVRDYEDSGKD-AC------------------ILTSDSQRDVKVLEWRPNGG  156 (444)
Q Consensus       103 ~~~~~sp-------~g~~la~~~~dg~v~iw~~~~~~~~-~~------------------~~~~~~~~~v~~l~~s~~~~  156 (444)
                      .|++|..       -|+++|.|+.|..|.|||+.-.... +.                  ....+|++.|.+|+|+..-+
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4666653       3589999999999999998642110 11                  11236999999999998877


Q ss_pred             eEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCC
Q 013347          157 RSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESS  234 (444)
Q Consensus       157 ~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~  234 (444)
                      .+++++ .|.+|++||+.+.+..                         .++..| .+.|.++.|+| ....|++|+.|+ 
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~-------------------------~s~~~~-~k~Vq~l~wh~~~p~~LLsGs~D~-  309 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPK-------------------------SSITHH-GKKVQTLEWHPYEPSVLLSGSYDG-  309 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcc-------------------------eehhhc-CCceeEEEecCCCceEEEeccccc-
Confidence            666655 5899999999954432                         334434 58999999998 677899999998 


Q ss_pred             eEEEEEcCCCCce-eeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCc-e-eccccCCCceeEEEECCCCCEEE
Q 013347          235 SFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWT-S-EPWSSTSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       235 ~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~-~-~~~~~~~~~v~~~~~sp~g~~l~  310 (444)
                      +|.+.|.+..... ......+.|-.++|.|... .++++..||+|+-+|+|... . ..+..|...|.++++++.-..++
T Consensus       310 ~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l  389 (463)
T KOG0270|consen  310 TVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL  389 (463)
T ss_pred             eEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence            9999999953332 2444568899999999654 56788899999999999864 3 45679999999999999888877


Q ss_pred             EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcC
Q 013347          311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ++.+.+..+..|.+....+              +....|.    ...++++.|+-. +||.|+..      +.++|||+.
T Consensus       390 ~t~s~d~~Vklw~~~~~~~--------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k------~~~~vwd~~  449 (463)
T KOG0270|consen  390 STASTDKVVKLWKFDVDSP--------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK------AVLRVWDIF  449 (463)
T ss_pred             eeccccceEEEEeecCCCC--------------cccccccccccceeecccCCCcceEEEecCcc------ceEEEeecc
Confidence            7766666666666543211              1111121    356677788764 45666665      789999998


Q ss_pred             CCCe
Q 013347          386 RTPL  389 (444)
Q Consensus       386 ~~~~  389 (444)
                      +...
T Consensus       450 ~~~~  453 (463)
T KOG0270|consen  450 TNSP  453 (463)
T ss_pred             cChh
Confidence            7543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=8.8e-19  Score=150.27  Aligned_cols=280  Identities=16%  Similarity=0.260  Sum_probs=194.4

Q ss_pred             ccceEEEEEec-----CCCeEEE---EECCCeEEEEEccCCCCcee--EEecCCCCCeEEEEEeeCCCeEEEEe-cCCcE
Q 013347           99 EVDLQGVSWHQ-----HKHIVAF---ISGSTQVIVRDYEDSGKDAC--ILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGI  167 (444)
Q Consensus        99 ~~~v~~~~~sp-----~g~~la~---~~~dg~v~iw~~~~~~~~~~--~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v  167 (444)
                      ...|+..+|..     +.++||+   ++..|...+.-+..-|+...  -...+|.++|..++|+|-+...+++| .|.+|
T Consensus        27 dIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v  106 (472)
T KOG0303|consen   27 DIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKV  106 (472)
T ss_pred             ceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceE
Confidence            34566666654     4567765   33445555555543332221  12258999999999999766665554 57999


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCc
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG  246 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~  246 (444)
                      .||.+........+.                  ..+..|.+|. ..|.-++|+|. .+.|++++.|. +|.+||+.+++.
T Consensus       107 ~vW~IPe~~l~~~lt------------------epvv~L~gH~-rrVg~V~wHPtA~NVLlsag~Dn-~v~iWnv~tgea  166 (472)
T KOG0303|consen  107 MVWQIPENGLTRDLT------------------EPVVELYGHQ-RRVGLVQWHPTAPNVLLSAGSDN-TVSIWNVGTGEA  166 (472)
T ss_pred             EEEECCCcccccCcc------------------cceEEEeecc-eeEEEEeecccchhhHhhccCCc-eEEEEeccCCce
Confidence            999998555443332                  2356789997 89999999994 46788899998 999999999988


Q ss_pred             eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccCCC-ceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          247 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSG-FVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       247 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~-~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .....|...|.++.|+.||.+|++++.|++|+|||.++++... -..|.+ .-..+.|-.+|..+.+|.+ ....+.+-+
T Consensus       167 li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs-r~seRq~aL  245 (472)
T KOG0303|consen  167 LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS-RMSERQIAL  245 (472)
T ss_pred             eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc-cccccceec
Confidence            7767799999999999999999999999999999999999843 245544 3466778888884444443 355677777


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN  404 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  404 (444)
                      |+... +.      ......++...+.|.---|.||.+++..++.+     |+.||-|.+...... ...+.+++. .++
T Consensus       246 wdp~n-l~------eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYyEit~d~P~-~hyln~f~S-~ep  311 (472)
T KOG0303|consen  246 WDPNN-LE------EPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYFEITNEPPF-VHYLNTFSS-KEP  311 (472)
T ss_pred             cCccc-cc------CcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEEEecCCCce-eEEeccccc-CCc
Confidence            76421 00      11223344445577777889999999988876     499999999886643 222223332 233


Q ss_pred             CcceeeeeC
Q 013347          405 PKPVAFSFH  413 (444)
Q Consensus       405 i~~v~~spd  413 (444)
                      -..+.|-|.
T Consensus       312 QRG~g~mPK  320 (472)
T KOG0303|consen  312 QRGMGFMPK  320 (472)
T ss_pred             ccccccccc
Confidence            456666664

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.7e-21  Score=177.37  Aligned_cols=229  Identities=15%  Similarity=0.249  Sum_probs=180.7

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ...|.++..-..++.+++|+.|..+-+|.+... .....+ .+|..+|.++.|++....+.+++.+|+|++||++..   
T Consensus        28 saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA---  102 (825)
T KOG0267|consen   28 SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-NAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA---  102 (825)
T ss_pred             hhhhceeeeeccceeeccCCCceeeccccccCC-chhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhh---
Confidence            345777777667889999999999999998763 222233 599999999999999666666667899999999832   


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v~  257 (444)
                                            ..++++.+|. ..+.++.|+|-+.+++.++.|. .+++||.+...+... ..|...+.
T Consensus       103 ----------------------k~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~Gc~~~~~s~~~vv~  158 (825)
T KOG0267|consen  103 ----------------------KIVRTLTGHL-LNITSVDFHPYGEFFASGSTDT-DLKIWDIRKKGCSHTYKSHTRVVD  158 (825)
T ss_pred             ----------------------hhhhhhhccc-cCcceeeeccceEEeccccccc-cceehhhhccCceeeecCCcceeE
Confidence                                  2445677886 8999999999999999999998 999999997666664 45778899


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .+.|+|+|++++.+++|..++|||...|+. ..+..|...+.++.|+|..-+++.+ +.+..+..|++.           
T Consensus       159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G-s~d~tv~f~dle-----------  226 (825)
T KOG0267|consen  159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG-SSDRTVRFWDLE-----------  226 (825)
T ss_pred             EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC-CCCceeeeeccc-----------
Confidence            999999999999999999999999999998 5677899999999999998777765 333444444432           


Q ss_pred             CCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                        +...+....... +|.+..|+|+++.+++|-..
T Consensus       227 --tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  227 --TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             --eeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence              123333333333 89999999999999887654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=1.2e-19  Score=164.44  Aligned_cols=147  Identities=20%  Similarity=0.335  Sum_probs=107.3

Q ss_pred             CeEEEEEec-CCCeEEEEecCCcEEEEECCCCce--------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          255 GLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS--------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       255 ~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      .|+.+.|+| |...|+++++||.|++|.+..+..        ..+..|...|+++.|+|-..-++...+-+.++..|++.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            478899999 777899999999999999876543        23558999999999999765444444445666666654


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC-CC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GD  403 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~  403 (444)
                                   .......+.+|. .|.+++|||||+.+|+.+.|      |+|+||+.++++..    +..-.+. +.
T Consensus       709 -------------~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD------g~~rVy~Prs~e~p----v~Eg~gpvgt  765 (1012)
T KOG1445|consen  709 -------------NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKD------GTLRVYEPRSREQP----VYEGKGPVGT  765 (1012)
T ss_pred             -------------hhhhhheeccCcCceeEEEECCCCcceeeeecC------ceEEEeCCCCCCCc----cccCCCCccC
Confidence                         334456788998 99999999999999999999      99999999876543    2111111 12


Q ss_pred             CCcceeeeeCCCCCCCceEEEEecc
Q 013347          404 NPKPVAFSFHDKFKQGPLLSVCWSS  428 (444)
Q Consensus       404 ~i~~v~~spdg~~~~~~~l~~~~~~  428 (444)
                      .--.+.|.=||++    ++.+|++.
T Consensus       766 RgARi~wacdgr~----viv~Gfdk  786 (1012)
T KOG1445|consen  766 RGARILWACDGRI----VIVVGFDK  786 (1012)
T ss_pred             cceeEEEEecCcE----EEEecccc
Confidence            2345678888887    45555543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=2.8e-19  Score=162.10  Aligned_cols=263  Identities=17%  Similarity=0.226  Sum_probs=172.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE-EecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~-~~~dg~v~iw~~~~~~~~~  179 (444)
                      .|..+.|-|....|++++.|.++++||++.....-..+..+|.+.|.+++|.|++..+++ ++.||.|.|||+.......
T Consensus       102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~  181 (720)
T KOG0321|consen  102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA  181 (720)
T ss_pred             eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence            699999999778899999999999999998532222234699999999999998766555 4558999999998433110


Q ss_pred             --eeecccccccccccc--CCCCc-eEEEEEeeccCCCceEE---EEEccCCCeEEEEee-CCCeEEEEEcCCCCcee--
Q 013347          180 --SVRSGAASFLGALSR--GPGTR-WTLVDFLRSQNGEQITA---LSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP--  248 (444)
Q Consensus       180 --~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~v~~---~~~sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~--  248 (444)
                        .+....   .+....  .+... -...+....+. ..|.+   +.+..|...|++++. |+ .|+|||++......  
T Consensus       182 ~e~~~~~~---~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D~-~iKVWDLRk~~~~~r~  256 (720)
T KOG0321|consen  182 LEEFDNRI---YGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAADS-TIKVWDLRKNYTAYRQ  256 (720)
T ss_pred             HHHHhhhh---hccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCCc-ceEEEeeccccccccc
Confidence              000000   000000  00000 00011111221 33433   445578889999887 87 99999999764321  


Q ss_pred             -------eecC---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCc-----eeEEEECCCCCEEEEEE
Q 013347          249 -------IRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF-----VTGATWDPEGRMILLAF  313 (444)
Q Consensus       249 -------~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~~~~  313 (444)
                             +..+   ...+.++.....|.+|++.+.|+.|++|++.+-.......+.+.     -..-..+|++.+++.+.
T Consensus       257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS  336 (720)
T KOG0321|consen  257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS  336 (720)
T ss_pred             CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC
Confidence                   1112   23567788887889998888899999999987665333322221     22334689999999764


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCC
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      . +...++|.+.+.            ......+.+|. .|+.++|.|.. .-+++++.|      ..+++|++..+
T Consensus       337 s-d~~ayiw~vs~~------------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD------~~~kiW~l~~~  393 (720)
T KOG0321|consen  337 S-DEQAYIWVVSSP------------EAPPALLLGHTREVTTVRWLPSATTPVATCSDD------FRVKIWRLSNG  393 (720)
T ss_pred             C-CcceeeeeecCc------------cCChhhhhCcceEEEEEeeccccCCCceeeccC------cceEEEeccCc
Confidence            4 466777776542            34455677888 99999998743 346677877      89999998643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=4.2e-19  Score=151.32  Aligned_cols=219  Identities=15%  Similarity=0.248  Sum_probs=160.2

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEec--CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      ..|.+.+..+.-++-++..++++.  .|.|+||++...  ...+....       ..........+.++.+|. ..=..+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~-------~~~~~s~~~Pl~t~~ghk-~EGy~L  217 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPH--LNALSEPG-------LEVKDSEFRPLFTFNGHK-GEGYGL  217 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhh--hhhhcCcc-------ccccccccCceEEecccC-ccceee
Confidence            367788888888887666555554  499999998721  11110000       000012334566788886 677899


Q ss_pred             EEccC-CCeEEEEeeCCCeEEEEEcCCCCc----eeeecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCce---e
Q 013347          218 SWGPD-GRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS---E  288 (444)
Q Consensus       218 ~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~---~  288 (444)
                      +|||- ...|++|..-+ .|++|...++.-    .++..|...|..++|||.. ..|++|+.||+|+|||++.+..   .
T Consensus       218 dWSp~~~g~LlsGDc~~-~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  218 DWSPIKTGRLLSGDCVK-GIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             ecccccccccccCcccc-ceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            99992 22366776666 899999988753    3566799999999999964 4679999999999999998843   4


Q ss_pred             ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEE
Q 013347          289 PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAV  366 (444)
Q Consensus       289 ~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~  366 (444)
                      ....|.+.|+.++|+..-.+|++ +++++++.+|+++...          ...++.+++.|. +|+++.|+|.. ..|++
T Consensus       297 ~~kAh~sDVNVISWnr~~~lLas-G~DdGt~~iwDLR~~~----------~~~pVA~fk~Hk~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRREPLLAS-GGDDGTLSIWDLRQFK----------SGQPVATFKYHKAPITSIEWHPHEDSVIAA  365 (440)
T ss_pred             EeeccCCceeeEEccCCcceeee-cCCCceEEEEEhhhcc----------CCCcceeEEeccCCeeEEEeccccCceEEe
Confidence            45789999999999998886665 4666777777765432          346788999999 99999999965 56777


Q ss_pred             EecCCCccccceEEEEEcCC
Q 013347          367 SYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~~  386 (444)
                      ++.|      +.|.+||+..
T Consensus       366 sg~D------~QitiWDlsv  379 (440)
T KOG0302|consen  366 SGED------NQITIWDLSV  379 (440)
T ss_pred             ccCC------CcEEEEEeec
Confidence            7777      8999999863

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.5e-17  Score=152.56  Aligned_cols=248  Identities=12%  Similarity=0.120  Sum_probs=164.1

Q ss_pred             ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      ....++++|++++|++++ .++.|.+|+++..+...........+....++|+|+++.++++.. ++.|.+|+++..+..
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~  115 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP  115 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC
Confidence            366789999999987765 578899999974333322221223445678999999888877765 699999999743322


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-------eec
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-------IRR  251 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-------~~~  251 (444)
                      ..                     ....+.+.  ....+++++|+++++++++...+.|.+||+.+.....       ...
T Consensus       116 ~~---------------------~~~~~~~~--~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~  172 (330)
T PRK11028        116 VA---------------------PIQIIEGL--EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV  172 (330)
T ss_pred             CC---------------------ceeeccCC--CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC
Confidence            11                     01111111  3567889999999998777654599999997632211       111


Q ss_pred             CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCC--Ccee---cccc------CCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          252 GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTSE---PWSS------TSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~--~~~~---~~~~------~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                      .......++|+|+|++++++.. +++|.+||++.  ++..   .+..      +......+.++|++++++++...+..+
T Consensus       173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence            2345678999999999977766 89999999973  3321   1111      112334688999999999886666777


Q ss_pred             EEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ..|++.....         ....+...........+.|+|||++|+++....     ++|.+|+++
T Consensus       253 ~v~~i~~~~~---------~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-----~~v~v~~~~  304 (330)
T PRK11028        253 SVFSVSEDGS---------VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-----HHISVYEID  304 (330)
T ss_pred             EEEEEeCCCC---------eEEEeEEEeccccCCceEECCCCCEEEEEEccC-----CcEEEEEEc
Confidence            7777632110         011112211112456889999999999988642     899999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=1.2e-18  Score=143.56  Aligned_cols=255  Identities=16%  Similarity=0.293  Sum_probs=172.9

Q ss_pred             ceEEEEEecCC-CeEEEEEC---C----CeEEEEEccCCCCc--------eeEEecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347          101 DLQGVSWHQHK-HIVAFISG---S----TQVIVRDYEDSGKD--------ACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (444)
Q Consensus       101 ~v~~~~~sp~g-~~la~~~~---d----g~v~iw~~~~~~~~--------~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d  164 (444)
                      .|+.++-+|.. +.|+++..   |    ....||.+..+...        ...+...+-+.|.|+.|.|++.++++. .|
T Consensus        65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm-~d  143 (370)
T KOG1007|consen   65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM-DD  143 (370)
T ss_pred             ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe-cc
Confidence            58889999854 45555432   1    24779999764211        112222455689999999996665544 59


Q ss_pred             CcEEEEecCCCCC-cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEc
Q 013347          165 GGICIWAPSYPGN-AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDV  241 (444)
Q Consensus       165 g~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~  241 (444)
                      ..|.+|+++.... ...+...                     .........++-+|+|  +|+.+++.+ |+ ++..||+
T Consensus       144 n~i~l~~l~ess~~vaev~ss---------------------~s~e~~~~ftsg~WspHHdgnqv~tt~-d~-tl~~~D~  200 (370)
T KOG1007|consen  144 NNIVLWSLDESSKIVAEVLSS---------------------ESAEMRHSFTSGAWSPHHDGNQVATTS-DS-TLQFWDL  200 (370)
T ss_pred             CceEEEEcccCcchheeeccc---------------------ccccccceecccccCCCCccceEEEeC-CC-cEEEEEc
Confidence            9999999985544 2222221                     1111125678889998  888887765 55 8999999


Q ss_pred             CCCCcee--eecCCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCC
Q 013347          242 AQGLGTP--IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGS  316 (444)
Q Consensus       242 ~~~~~~~--~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~  316 (444)
                      ++..+..  ...|...|..+.|+|+-++ |++++.||.|++||.+..+.  ..+.+|..+|+++.|+|....|+.+++.+
T Consensus       201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD  280 (370)
T KOG1007|consen  201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD  280 (370)
T ss_pred             cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence            9876554  2346788999999998765 58999999999999998765  66889999999999999877766665555


Q ss_pred             ceEEEEEeecCCC----------------CcCCCcCCCCcccccccccCC-ceeEEEECCCCCEE-EEEecCCCccccce
Q 013347          317 LTLGSIHFASKPP----------------SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL-AVSYKGGDDIYKGL  378 (444)
Q Consensus       317 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l-~~~~~d~~~~~d~~  378 (444)
                      ..+..+.......                ....+..++....+.++..|. .|.+++||.-..++ |+-+.|      |.
T Consensus       281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD------GR  354 (370)
T KOG1007|consen  281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD------GR  354 (370)
T ss_pred             ceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC------ce
Confidence            5555443322110                000112223444566778888 99999999876654 555555      88


Q ss_pred             EEEEEcC
Q 013347          379 IAIYDAR  385 (444)
Q Consensus       379 i~vwd~~  385 (444)
                      +.|=.+.
T Consensus       355 viIs~V~  361 (370)
T KOG1007|consen  355 VIISSVP  361 (370)
T ss_pred             EEeecCC
Confidence            8776654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.8e-18  Score=142.01  Aligned_cols=244  Identities=11%  Similarity=0.128  Sum_probs=174.6

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      .-.+.|++|.|+|.++.|++++.||++++|++........+.                          | ..++.+++|.
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--------------------------~-~~plL~c~F~   63 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--------------------------H-GAPLLDCAFA   63 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--------------------------c-CCceeeeecc
Confidence            446789999999998999999999999999998442222211                          2 3799999998


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEE
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA  300 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~  300 (444)
                      ++ ..+++|+.|| .|+.+|+.++....+..|..++.++..++-...+++|+.|++|++||.+.....-.......|.++
T Consensus        64 d~-~~~~~G~~dg-~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~  141 (323)
T KOG1036|consen   64 DE-STIVTGGLDG-QVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM  141 (323)
T ss_pred             CC-ceEEEeccCc-eEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE
Confidence            74 5688999998 999999999999999999999999999998889999999999999999974443333444578887


Q ss_pred             EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      ..+  |..|++++.+ ..+..+++.+...           .....-..-. .+.++++-|++.-.++++-+      |.|
T Consensus       142 ~v~--g~~LvVg~~~-r~v~iyDLRn~~~-----------~~q~reS~lkyqtR~v~~~pn~eGy~~sSie------GRV  201 (323)
T KOG1036|consen  142 DVS--GNRLVVGTSD-RKVLIYDLRNLDE-----------PFQRRESSLKYQTRCVALVPNGEGYVVSSIE------GRV  201 (323)
T ss_pred             ecc--CCEEEEeecC-ceEEEEEcccccc-----------hhhhccccceeEEEEEEEecCCCceEEEeec------ceE
Confidence            764  5567766554 4566666654311           1111111122 68899999988888888888      787


Q ss_pred             EEEEcCCCC-----eEEEEEeeeeeCC---CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          380 AIYDARRTP-----LISLSLIGFIRGP---GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       380 ~vwd~~~~~-----~~~~~~~~~~~~~---~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      .+=.++..+     .......+.....   .-+|.+++|+|--+     .++-|=+||.|.+|++..
T Consensus       202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-----tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-----TFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-----eEEecCCCceEEEccCcc
Confidence            776555431     1111111111111   12588999999633     366777899999998753

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.6e-18  Score=150.85  Aligned_cols=300  Identities=13%  Similarity=0.157  Sum_probs=200.8

Q ss_pred             eEEEEEecCCCeEEEEECC---CeEEEEEccCCCCceeEEecCC----CCCeEEEEEeeC-------CCeEEEEecCCcE
Q 013347          102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDS----QRDVKVLEWRPN-------GGRSLSVGCKGGI  167 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~d---g~v~iw~~~~~~~~~~~~~~~~----~~~v~~l~~s~~-------~~~ll~~~~dg~v  167 (444)
                      .-.+..-|+.++|+++-.+   ..+.+|-.+. . ....+. .|    .....|++|..-       |++++++..+..|
T Consensus       128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~-~-e~nlYv-HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I  204 (463)
T KOG0270|consen  128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNE-E-EENLYV-HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI  204 (463)
T ss_pred             cccceeccCCcEEEEeeccCCceEEEEEEEcC-C-CcceeE-ecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence            3456677877777776532   3455554443 1 122221 22    234467777432       3456666668999


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCce-EEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCC
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRW-TLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL  245 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~  245 (444)
                      .|||++-...........     +.......+. ..-..-.+|. ..|.+++|+.. .+.||+|+.|. +|++||+.+++
T Consensus       205 eIWDLDI~d~v~P~~~LG-----s~~sk~~~k~~k~~~~~~gHT-davl~Ls~n~~~~nVLaSgsaD~-TV~lWD~~~g~  277 (463)
T KOG0270|consen  205 EIWDLDIVDAVLPCVTLG-----SKASKKKKKKGKRSNSASGHT-DAVLALSWNRNFRNVLASGSADK-TVKLWDVDTGK  277 (463)
T ss_pred             EEeccccccccccceeec-----hhhhhhhhhhcccccccccch-HHHHHHHhccccceeEEecCCCc-eEEEEEcCCCC
Confidence            999998433322211110     0000000000 0011123454 78889999874 45788999998 99999999999


Q ss_pred             ceeeec-CCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          246 GTPIRR-GFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       246 ~~~~~~-~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      +..... |.+.|.+++|+|. ..+|++|+.|++|.+.|.+.... .......+.|..++|.|.....+..+.++++++.+
T Consensus       278 p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~  357 (463)
T KOG0270|consen  278 PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYF  357 (463)
T ss_pred             cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEee
Confidence            988665 6789999999995 67789999999999999996333 22234567899999999998888888888999999


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                      ++++            .+.++.+++.|. +|.++++++.- .+|++++.+      +.+++|++......      ....
T Consensus       358 D~R~------------~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vklw~~~~~~~~------~v~~  413 (463)
T KOG0270|consen  358 DIRN------------PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKLWKFDVDSPK------SVKE  413 (463)
T ss_pred             ecCC------------CCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEEEeecCCCCc------cccc
Confidence            9865            347788899999 99999998865 567788877      99999998753321      1122


Q ss_pred             CC---CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          401 PG---DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       401 ~~---~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      |.   +...|.++.|+-    ..+|++|=..+.+.+|+++-.
T Consensus       414 ~~~~~~rl~c~~~~~~~----a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDV----AFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccccccceeecccCCCc----ceEEEecCccceEEEeecccC
Confidence            22   123455565653    447999988999999987643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=1.2e-17  Score=157.47  Aligned_cols=238  Identities=16%  Similarity=0.190  Sum_probs=160.0

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      .|.+||.+.  .....++ .+...+.+.+|+|||+.++.++.   +..|.+|++..+. ...+.                
T Consensus       180 ~l~~~d~dg--~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~----------------  239 (429)
T PRK03629        180 ELRVSDYDG--YNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVA----------------  239 (429)
T ss_pred             eEEEEcCCC--CCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEcc----------------
Confidence            577777764  3333343 45678999999999988887654   3578888887322 11111                


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC-C
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G  275 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~  275 (444)
                            .+.    ..+..++|+|||+.|+.... ++ ..|++||+.+++...+..+...+....|+|||+.|+..+.+ +
T Consensus       240 ------~~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g  309 (429)
T PRK03629        240 ------SFP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG  309 (429)
T ss_pred             ------CCC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence                  122    23456899999999887643 33 15899999988777776666678889999999998776654 3


Q ss_pred             --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347          276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  351 (444)
Q Consensus       276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (444)
                        .|+++|+.+++...+...........|+|+|++|++....++  .++.+++.              ......+.....
T Consensus       310 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~--------------~g~~~~Lt~~~~  375 (429)
T PRK03629        310 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA--------------TGGVQVLTDTFL  375 (429)
T ss_pred             CceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC--------------CCCeEEeCCCCC
Confidence              455667877776655545555678999999999987665433  23344431              111222332223


Q ss_pred             eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      .....|+|||++|+.++.++..   ..+.++++..+..      ..+.+|...+...+|||
T Consensus       376 ~~~p~~SpDG~~i~~~s~~~~~---~~l~~~~~~G~~~------~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        376 DETPSIAPNGTMVIYSSSQGMG---SVLNLVSTDGRFK------ARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCc---eEEEEEECCCCCe------EECccCCCCcCCcccCC
Confidence            3467899999999999877432   4578888865443      24567777889999997

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=3.1e-18  Score=161.81  Aligned_cols=233  Identities=18%  Similarity=0.240  Sum_probs=153.9

Q ss_pred             CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCC
Q 013347          120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (444)
Q Consensus       120 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (444)
                      +..|.+||.+.  .....+ ..|...+.+++|+|||++++.++.+   ..|++||+..+.. .                 
T Consensus       183 ~~~i~i~d~dg--~~~~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~-----------------  241 (429)
T PRK01742        183 PYEVRVADYDG--FNQFIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-K-----------------  241 (429)
T ss_pred             eEEEEEECCCC--CCceEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-E-----------------
Confidence            46888998874  333444 3677789999999999988887654   4699999873321 1                 


Q ss_pred             CCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEE--EEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe-
Q 013347          197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFT--IWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK-  272 (444)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~--iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-  272 (444)
                           .+..+.+    ....++|+|||+.|++++ .+| .+.  +||+.+++...+..+...+..+.|+|||+.|+.++ 
T Consensus       242 -----~l~~~~g----~~~~~~wSPDG~~La~~~~~~g-~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        242 -----VVASFRG----HNGAPAFSPDGSRLAFASSKDG-VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             -----EEecCCC----ccCceeECCCCCEEEEEEecCC-cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence                 1122222    234689999999998875 455 555  45777777666777777788999999999876554 


Q ss_pred             cCCcEEEEECCC--CceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          273 FDGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       273 ~d~~v~iwd~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      .++...||+++.  +....+ .+..  ..+.|+|+|++|++....  .+..+++...             . ...+....
T Consensus       312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g-------------~-~~~lt~~~  372 (429)
T PRK01742        312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD--NVVKQDLTSG-------------S-TEVLSSTF  372 (429)
T ss_pred             CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC--CEEEEECCCC-------------C-eEEecCCC
Confidence            567788887643  333323 3333  467899999999876542  2344443211             1 11111111


Q ss_pred             ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      ....+.|+|||++|+.++.+      +.+.+|.+.  ++...     ..+.+|...+..++|||-
T Consensus       373 ~~~~~~~sPdG~~i~~~s~~------g~~~~l~~~~~~G~~~-----~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        373 LDESPSISPNGIMIIYSSTQ------GLGKVLQLVSADGRFK-----ARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCceECCCCCEEEEEEcC------CCceEEEEEECCCCce-----EEccCCCCCCCCcccCCC
Confidence            23567899999999999887      666666642  23332     456677888899999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=5.7e-19  Score=160.93  Aligned_cols=243  Identities=17%  Similarity=0.238  Sum_probs=180.3

Q ss_pred             CcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEE
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVL  149 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l  149 (444)
                      .-.++.+|+||..-                  |+|++|+.||+++|+|+.|..|.||+-.-    .-++.-.|++.|.|+
T Consensus        42 dG~llqtLKgHKDt------------------VycVAys~dGkrFASG~aDK~VI~W~~kl----EG~LkYSH~D~IQCM   99 (1081)
T KOG1538|consen   42 DGTLLQPLKGHKDT------------------VYCVAYAKDGKRFASGSADKSVIIWTSKL----EGILKYSHNDAIQCM   99 (1081)
T ss_pred             Ccccccccccccce------------------EEEEEEccCCceeccCCCceeEEEecccc----cceeeeccCCeeeEe
Confidence            34566778888665                  99999999999999999999999998764    223334899999999


Q ss_pred             EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347          150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA  229 (444)
Q Consensus       150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  229 (444)
                      .|+|-...|+ +++=...-+|+.+.+ .......                           ...+.+++|..||++++.|
T Consensus       100 sFNP~~h~La-sCsLsdFglWS~~qK-~V~K~ks---------------------------s~R~~~CsWtnDGqylalG  150 (1081)
T KOG1538|consen  100 SFNPITHQLA-SCSLSDFGLWSPEQK-SVSKHKS---------------------------SSRIICCSWTNDGQYLALG  150 (1081)
T ss_pred             ecCchHHHhh-hcchhhccccChhhh-hHHhhhh---------------------------heeEEEeeecCCCcEEEEe
Confidence            9999954454 444455668887622 2111111                           2578999999999999999


Q ss_pred             eeCCCeEEEEEcCCCCceeeec---CCCCeEEEEEecCC-----CeEEEEecCCcEEEEECCCCceeccccCCCceeEEE
Q 013347          230 SYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTG-----DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGAT  301 (444)
Q Consensus       230 ~~d~~~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~-----~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  301 (444)
                      -.+| +|.+-+-...+...+..   ..++|++++|+|..     ..+++.....++.+|.+.......-....-...|++
T Consensus       151 ~~nG-TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~Cis  229 (1081)
T KOG1538|consen  151 MFNG-TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCIS  229 (1081)
T ss_pred             ccCc-eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhe
Confidence            9998 99998765544445444   46889999999953     467788888899999887654433333445567999


Q ss_pred             ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEE
Q 013347          302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA  380 (444)
Q Consensus       302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~  380 (444)
                      +.++|++++.|+++    +.+++...           ++..+.++...+ +|+.++..|++++++.|..|      |+|.
T Consensus       230 Yf~NGEy~LiGGsd----k~L~~fTR-----------~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD------GTiA  288 (1081)
T KOG1538|consen  230 YFTNGEYILLGGSD----KQLSLFTR-----------DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD------GTIA  288 (1081)
T ss_pred             eccCCcEEEEccCC----CceEEEee-----------cCeEEeeccccceeEEEEEEccCCceEEEEEcc------Ceee
Confidence            99999999988554    33343321           334444554444 89999999999999999999      9999


Q ss_pred             EEEcC
Q 013347          381 IYDAR  385 (444)
Q Consensus       381 vwd~~  385 (444)
                      -|++.
T Consensus       289 CyNl~  293 (1081)
T KOG1538|consen  289 CYNLI  293 (1081)
T ss_pred             hhhhH
Confidence            99864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2e-19  Score=173.67  Aligned_cols=245  Identities=20%  Similarity=0.262  Sum_probs=179.4

Q ss_pred             cceEEEEEecCCCe----EEEEECCCeEEEEEccCC--C-Cce-eEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEE
Q 013347          100 VDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS--G-KDA-CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW  170 (444)
Q Consensus       100 ~~v~~~~~sp~g~~----la~~~~dg~v~iw~~~~~--~-~~~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw  170 (444)
                      ...+.++|.+.|..    ||.|..||.|.+|+...-  + ... ......|.+.|..+.|++..+.++++|. +|.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            35789999998876    888889999999998762  1 111 1122579999999999999875666554 6999999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCcee-
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTP-  248 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~-  248 (444)
                      |+.....+....+.                        .....|.+++|+.. ...|++++.+| .+.|||++..+.+. 
T Consensus       145 Dlnn~~tP~~~~~~------------------------~~~~eI~~lsWNrkvqhILAS~s~sg-~~~iWDlr~~~pii~  199 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQ------------------------APPSEIKCLSWNRKVSHILASGSPSG-RAVIWDLRKKKPIIK  199 (1049)
T ss_pred             ccCCcCCCCCCCCC------------------------CCcccceEeccchhhhHHhhccCCCC-CceeccccCCCcccc
Confidence            99854443332111                        01368999999974 45567777776 99999999875543 


Q ss_pred             eecCC--CCeEEEEEecCC-CeEEEEecCC---cEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          249 IRRGF--GGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       249 ~~~~~--~~v~~~~~sp~~-~~l~~~~~d~---~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      +..+.  ..+..++|+|+. ..+++++.|.   .|.+||+|....  +.+..|...|.++.|++.+..++.+++.|+++.
T Consensus       200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii  279 (1049)
T KOG0307|consen  200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII  279 (1049)
T ss_pred             cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence            33332  347889999975 3456665543   799999986544  567799999999999999866666777777776


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCCC
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      .|...             +++.+..+.... ++..+.|+|... .+++++-+      |.|.||.+.+..
T Consensus       280 ~wN~~-------------tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd------gkI~I~sl~~~~  330 (1049)
T KOG0307|consen  280 CWNPN-------------TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD------GKISIYSLQGTD  330 (1049)
T ss_pred             EecCC-------------CceEeeecCCCCcceeeeeecCCCcchhhhheec------cceeeeeeecCC
Confidence            66642             345555665544 899999999875 77777777      999999998644

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=3.5e-18  Score=153.99  Aligned_cols=241  Identities=15%  Similarity=0.236  Sum_probs=176.3

Q ss_pred             EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEE
Q 013347          137 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  216 (444)
Q Consensus       137 ~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  216 (444)
                      .+..+|.+.|.+++..|.|..|++++.||+|+||.+.++..+                         +++.-  ++.|.|
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-------------------------r~~~~--d~~I~~  446 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-------------------------RTVQF--DSEIRS  446 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-------------------------EEEee--cceeEE
Confidence            344699999999999999888888888999999999955443                         33332  258999


Q ss_pred             EEEccCCCeE-EEEeeCCCeEEEEEcCCC------------------------------------C--ceeeecCCCCeE
Q 013347          217 LSWGPDGRYL-ASASYESSSFTIWDVAQG------------------------------------L--GTPIRRGFGGLS  257 (444)
Q Consensus       217 ~~~sp~~~~l-~~~~~d~~~i~iwd~~~~------------------------------------~--~~~~~~~~~~v~  257 (444)
                      ++|+|.+..- +.++..+ .+.|-+..-|                                    +  ......|...|.
T Consensus       447 vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~  525 (733)
T KOG0650|consen  447 VAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR  525 (733)
T ss_pred             EEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence            9999976642 2222232 3433332111                                    0  012345678899


Q ss_pred             EEEEecCCCeEEEEecC---CcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          258 ILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      .+.|+..|.||++...+   ..|.|.++...+. ..+....+.+.++.|+|...+++++.....  .++++.        
T Consensus       526 ~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~v--RiYdL~--------  595 (733)
T KOG0650|consen  526 QVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSV--RIYDLS--------  595 (733)
T ss_pred             eeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccce--EEEehh--------
Confidence            99999999999887653   4799999987665 345566788999999999999998876543  333432        


Q ss_pred             CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                           ....++.+.... .|.+++.+|.|.-|+.++.|      +.+..||+.-.    .++.+.++-|...+++|+|++
T Consensus       596 -----kqelvKkL~tg~kwiS~msihp~GDnli~gs~d------~k~~WfDldls----skPyk~lr~H~~avr~Va~H~  660 (733)
T KOG0650|consen  596 -----KQELVKKLLTGSKWISSMSIHPNGDNLILGSYD------KKMCWFDLDLS----SKPYKTLRLHEKAVRSVAFHK  660 (733)
T ss_pred             -----HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC------CeeEEEEcccC----cchhHHhhhhhhhhhhhhhcc
Confidence                 334445554444 89999999999999999988      99999999853    334577888999999999986


Q ss_pred             CCCCCCCceEEEEeccceeeeee
Q 013347          413 HDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       413 dg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      .  |   .+++.|++||.+.+|-
T Consensus       661 r--y---PLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  661 R--Y---PLFASGSDDGTVIVFH  678 (733)
T ss_pred             c--c---ceeeeecCCCcEEEEe
Confidence            4  3   4789999999998653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1.6e-18  Score=157.22  Aligned_cols=252  Identities=18%  Similarity=0.268  Sum_probs=174.5

Q ss_pred             EEEecCCCeEEE--EECCCeEEEEEccCCCCceeEEe--cCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          105 VSWHQHKHIVAF--ISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       105 ~~~sp~g~~la~--~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      =-|+.+..++|+  ++..|.|.||++...++...-..  ......|+.+.|.| |..+|++++.||.|+||.+...+...
T Consensus       585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence            345556666665  45689999999998776654322  13567899999998 44577788888999999998665544


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~  257 (444)
                      ...+                  ....+..|. ..|+++.|+| -...|++++.|- +|++||+.+.+.. .+.+|.+.|.
T Consensus       665 ~~~t------------------Pe~~lt~h~-eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l~gHtdqIf  724 (1012)
T KOG1445|consen  665 NEMT------------------PEKILTIHG-EKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRLVGHTDQIF  724 (1012)
T ss_pred             ccCC------------------cceeeeccc-ceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhheeccCcCcee
Confidence            3332                  234577775 8999999999 667899999998 9999999998755 4788999999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceecccc---CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      .++|||||+.+++.+.||+|++|+.++++.....+   -...-..+.|.-+|+++++.+-+...-+.+.+++...     
T Consensus       725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~-----  799 (1012)
T KOG1445|consen  725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT-----  799 (1012)
T ss_pred             EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh-----
Confidence            99999999999999999999999999876533221   1233456788899999887654444444454443211     


Q ss_pred             cCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          335 LLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                         +....+.+..-..  .+.--.+.+|...|+..+.+     |..|++|.+-....
T Consensus       800 ---l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  800 ---LDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVIYESP  848 (1012)
T ss_pred             ---ccCCcceeeeecccCccccccccCCCceEEEecCC-----CceEEEEEecCCCc
Confidence               1111111111000  12222355677666655544     38999999865443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=7.4e-18  Score=147.29  Aligned_cols=208  Identities=16%  Similarity=0.226  Sum_probs=158.5

Q ss_pred             cCCCCCeEEEEEeeCCC-eEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          140 SDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~-~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      .-+.+.|++++|+|... .++++|.. |.|-+||+...+...                     .-+..+..|. .+|.++
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~---------------------d~v~~f~~hs-~~Vs~l  240 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK---------------------DGVYLFTPHS-GPVSGL  240 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc---------------------CceEEeccCC-ccccce
Confidence            46789999999999866 66666664 999999996222111                     1233456675 899999


Q ss_pred             EEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeec---CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccc
Q 013347          218 SWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS  291 (444)
Q Consensus       218 ~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~  291 (444)
                      .|+| +-..+++.+.|| +|++-|++......+..   ....+..+.|+.+...++.+..=|.+.+||+++++.  ..+.
T Consensus       241 ~F~P~n~s~i~ssSyDG-tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~  319 (498)
T KOG4328|consen  241 KFSPANTSQIYSSSYDG-TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR  319 (498)
T ss_pred             EecCCChhheeeeccCc-eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh
Confidence            9999 566789999998 99999999875444333   234567788888888888888778999999998776  4566


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                      -|...|.+++++|...+++++++.+.+..+|+++.....         ..++-....|. .|.++.|||.|..|++.+.|
T Consensus       320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K---------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D  390 (498)
T KOG4328|consen  320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK---------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD  390 (498)
T ss_pred             hhhcccceeecCCCCchheeecccCcceeeeehhhhcCC---------CCcceecccccceeeeeEEcCCCCceEeeccC
Confidence            788899999999999988878888888888887654221         11122333455 99999999998889999888


Q ss_pred             CCccccceEEEEEcC
Q 013347          371 GDDIYKGLIAIYDAR  385 (444)
Q Consensus       371 ~~~~~d~~i~vwd~~  385 (444)
                            +.|+|||..
T Consensus       391 ------~~IRv~dss  399 (498)
T KOG4328|consen  391 ------NEIRVFDSS  399 (498)
T ss_pred             ------CceEEeecc
Confidence                  899999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.9e-17  Score=133.35  Aligned_cols=241  Identities=12%  Similarity=0.103  Sum_probs=164.4

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCC--------CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      |.+-+|+|.+++|+.|+.+|+|.+..+..-        ++.......+|.++|+.++|..+   ++.++.||.|+-|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~gdG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGGDGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeeccCceEEEeeeh
Confidence            666789999999999999999999998642        34444444789999999999843   5556667999999886


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeec--cCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-ee
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR  250 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~  250 (444)
                      .........               ..|+.....+.  -.-..|+++-..|..+-++.++.|+ .++-||+++++... +.
T Consensus        90 E~~es~~~K---------------~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   90 EEEESLATK---------------RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYR  153 (325)
T ss_pred             hhhhhccch---------------hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEc
Confidence            322211000               01221111111  1124688999999888888888898 99999999998776 67


Q ss_pred             cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc----------cC-CCceeEEEECCCCCEEEEEEcCCceE
Q 013347          251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------ST-SGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------~~-~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                      +|...+.++.--.....+++|++||++|+||.++++.....          .| ..+|.+++-  +..+++++++.  .+
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp--~l  229 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP--KL  229 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC--ce
Confidence            88999999988555567899999999999999999873322          11 233555544  55688876553  44


Q ss_pred             EEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      ..|++..             .++...+.-..++..+.|..|  .+++++..      +.+.-|.+..
T Consensus       230 slwhLrs-------------se~t~vfpipa~v~~v~F~~d--~vl~~G~g------~~v~~~~l~G  275 (325)
T KOG0649|consen  230 SLWHLRS-------------SESTCVFPIPARVHLVDFVDD--CVLIGGEG------NHVQSYTLNG  275 (325)
T ss_pred             eEEeccC-------------CCceEEEecccceeEeeeecc--eEEEeccc------cceeeeeecc
Confidence            5555432             223333333334677777543  56666666      7899998864

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.80  E-value=5.2e-18  Score=138.12  Aligned_cols=284  Identities=14%  Similarity=0.105  Sum_probs=177.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|+++.|..+++ |.+|...|.|++|.+.+ ......+...|...|+.+.--|+ +.+.+-+.|..+.+|++.....   
T Consensus        16 ~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt-~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~---   89 (323)
T KOG0322|consen   16 SVTSVLFQANER-LMSGLSVGIVKMWVLQT-ERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF---   89 (323)
T ss_pred             hheehhhccchh-hhcccccceEEEEEeec-CccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce---
Confidence            388999988887 77789999999999998 44444443367889999999998 7899999999999999983211   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC----eEEEEeeCCCeEEEEEcCCCCceeee-----c
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR----YLASASYESSSFTIWDVAQGLGTPIR-----R  251 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~d~~~i~iwd~~~~~~~~~~-----~  251 (444)
                                          ..++.+-..+ -.....+++++++    .+++-+.....+.+-|........+.     .
T Consensus        90 --------------------i~i~Si~~ns-lgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~  148 (323)
T KOG0322|consen   90 --------------------ISIHSIVVNS-LGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERS  148 (323)
T ss_pred             --------------------EEEeeeeccc-cccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcc
Confidence                                1111111111 0111111222221    11111111001222222221111111     1


Q ss_pred             CCCCeEEEEEec-CCCe--EEEEecCCcEEEEECCCCce-----------eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          252 GFGGLSILKWSP-TGDY--FFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       252 ~~~~v~~~~~sp-~~~~--l~~~~~d~~v~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      ..+.+.+..|.. ++.+  +++|-++|.+.+||+.++..           .....|..+|.++.|.+.-..=+.++.. .
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~-d  227 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD-D  227 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc-c
Confidence            235677776543 3443  36788899999999998732           2234788999999998643322222222 2


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  396 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~  396 (444)
                      .+-.+.+.....         ..+....++-.+ .|..+.+-||++.+|+++.|      +.||||.-++...     +.
T Consensus       228 kl~~~Sl~~s~g---------slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD------~RiRVyswrtl~p-----LA  287 (323)
T KOG0322|consen  228 KLVMYSLNHSTG---------SLQIRKEITLKNPGVSGVRIRPDGKILATAGWD------HRIRVYSWRTLNP-----LA  287 (323)
T ss_pred             cceeeeeccccC---------cccccceEEecCCCccceEEccCCcEEeecccC------CcEEEEEeccCCc-----hh
Confidence            223333321100         111111222222 78899999999999999998      9999999997544     47


Q ss_pred             eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .++-|...|.+++|+||..     +|+.+..|++|.+|+|+
T Consensus       288 VLkyHsagvn~vAfspd~~-----lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  288 VLKYHSAGVNAVAFSPDCE-----LMAAASKDARISLWKLY  323 (323)
T ss_pred             hhhhhhcceeEEEeCCCCc-----hhhhccCCceEEeeecC
Confidence            7889999999999999944     58899999999999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=6.7e-18  Score=140.87  Aligned_cols=196  Identities=18%  Similarity=0.205  Sum_probs=149.8

Q ss_pred             eEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc
Q 013347          214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS  292 (444)
Q Consensus       214 v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  292 (444)
                      ..|+.|++.|.+||+|..+| .|.|||+.+..... +..|..+|.+++||+||+.|++++.|..|.+||+..|.+.....
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG-~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANG-RVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCC-cEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            78999999999999999998 99999999887655 56788999999999999999999999999999999999866666


Q ss_pred             CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEec
Q 013347          293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYK  369 (444)
Q Consensus       293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~  369 (444)
                      ..++|+.+.|+|..+..++++--+..-..+.+.+..           ...+..-....   .-....|.+.|+|+++|..
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-----------HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-----------eeeccCCCccccccccccccccCCCCEEEEecC
Confidence            788999999999766555443332334555554311           01110000000   1233468999999999988


Q ss_pred             CCCccccceEEEEEcCCCCeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .      |.+.++|..+-+++     ..++-. ...|..+.|+..|++     +.+..+|-.|+.|++-
T Consensus       174 K------Gkllv~~a~t~e~v-----as~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  174 K------GKLLVYDAETLECV-----ASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEIS  226 (405)
T ss_pred             c------ceEEEEecchheee-----eeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehh
Confidence            7      99999999986655     333332 367889999988876     8899999999999864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.8e-17  Score=137.26  Aligned_cols=284  Identities=13%  Similarity=0.160  Sum_probs=183.1

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ..+|++-+.|.|++||..+ ++....+ +++...+..+.|...  ...+++++.||+|++||++.......+.       
T Consensus        41 ~~vav~lSngsv~lyd~~t-g~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~-------  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT-GQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS-------  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccc-hhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee-------
Confidence            5688888999999999998 5555555 588899999999763  3467788889999999999655544332       


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee----CCCeEEEEEcCCCCc-ee--eecCCCCeEEEEEe
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY----ESSSFTIWDVAQGLG-TP--IRRGFGGLSILKWS  262 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~~i~iwd~~~~~~-~~--~~~~~~~v~~~~~s  262 (444)
                                      ...+...+..+++.+-.++.+++|..    +- .|.+||++..+. +.  ...|...|++++|+
T Consensus       112 ----------------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A-~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH  174 (376)
T KOG1188|consen  112 ----------------WTQQSGTPFICLDLNCKKNIIACGTELTRSDA-SVVLWDVRSEQQLLRQLNESHNDDVTQLRFH  174 (376)
T ss_pred             ----------------ccCCCCCcceEeeccCcCCeEEeccccccCce-EEEEEEeccccchhhhhhhhccCcceeEEec
Confidence                            22333357788888778888888753    44 899999998765 32  45688999999999


Q ss_pred             cC-CCeEEEEecCCcEEEEECCCCce----eccccCCCceeEEEECCCC--CEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          263 PT-GDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       263 p~-~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      |. .++|++|+.||-|.+||+.....    .....+...|.++.|..++  +....+  .......|.+.+.........
T Consensus       175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccC
Confidence            95 67889999999999999987654    2345788889999999888  533333  334455555544321111000


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc---CCCCeEEEEEeeeeeC-CCCCCcceeee
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA---RRTPLISLSLIGFIRG-PGDNPKPVAFS  411 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~---~~~~~~~~~~~~~~~~-~~~~i~~v~~s  411 (444)
                      .+......+....-..+......-++..++.++.+.     |...++-+   .++..  .+....+.+ |..-|+++.|.
T Consensus       253 ~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~-----n~~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~  325 (376)
T KOG1188|consen  253 PDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDS-----NKGTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFD  325 (376)
T ss_pred             ccchhhhHHhhhhhhheeecccCCCcceEEEecccc-----CceeEEEeeecccccc--cCccccccCCcHHHHHHHhhh
Confidence            000011111111111222322233556666666643     34444433   33332  233344555 66778888886


Q ss_pred             eCCCCCCCceEEEEeccceeeeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      -.     ..++--|=+||.++.|.
T Consensus       326 ~~-----~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  326 VK-----NDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             cc-----cceeeccCCCceEEEEe
Confidence            33     33466666889999887

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1e-16  Score=151.78  Aligned_cols=239  Identities=18%  Similarity=0.242  Sum_probs=157.2

Q ss_pred             CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCC
Q 013347          121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG  197 (444)
Q Consensus       121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (444)
                      ..|.+||..  +.....++ .+...+.+.+|+|||+.++.++.+   ..|.+|++..+.. ..                 
T Consensus       184 ~~l~i~D~~--g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~-----------------  242 (433)
T PRK04922        184 YALQVADSD--GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-EL-----------------  242 (433)
T ss_pred             EEEEEECCC--CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EE-----------------
Confidence            357788875  33344443 566789999999999888887743   4688999873321 11                 


Q ss_pred             CceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-C
Q 013347          198 TRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D  274 (444)
Q Consensus       198 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d  274 (444)
                              +... .....+++|+|||+.|+.. +.++ ..|++||+.+++...+..+......++|+|||++|+.++. +
T Consensus       243 --------l~~~-~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~  313 (433)
T PRK04922        243 --------VASF-RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG  313 (433)
T ss_pred             --------eccC-CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCC
Confidence                    1111 1344578999999988654 4443 2699999998887776666555678899999999877664 4


Q ss_pred             C--cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          275 G--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       275 ~--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      +  .|+++|+.+++...+.........++|+|+|++|++....++  .++.+++.              ......+....
T Consensus       314 g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~--------------~g~~~~Lt~~~  379 (433)
T PRK04922        314 GRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS--------------TGSVRTLTPGS  379 (433)
T ss_pred             CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC--------------CCCeEECCCCC
Confidence            4  477778877776555444445567899999999987654332  34444431              11122333222


Q ss_pred             ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      ......|+|||++|+..+.+...   +.|.++++..+..      ..+..+...+..++|||
T Consensus       380 ~~~~p~~spdG~~i~~~s~~~g~---~~L~~~~~~g~~~------~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        380 LDESPSFAPNGSMVLYATREGGR---GVLAAVSTDGRVR------QRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce------EEcccCCCCCCCCccCC
Confidence            34567899999998887765322   6788888865432      23444456677888887

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=2e-16  Score=148.75  Aligned_cols=288  Identities=19%  Similarity=0.262  Sum_probs=194.8

Q ss_pred             ceEEEEEecCCC--eEEEE------------------ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE
Q 013347          101 DLQGVSWHQHKH--IVAFI------------------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS  160 (444)
Q Consensus       101 ~v~~~~~sp~g~--~la~~------------------~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~  160 (444)
                      .++++.|.|++.  ...+.                  ..++.+.||++..+......+  .-...|+++.|+|....+++
T Consensus       182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~p~ll~  259 (555)
T KOG1587|consen  182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFDPNLLA  259 (555)
T ss_pred             ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEE--ecCCceeEEEeccCCcceEE
Confidence            578888888776  11110                  022468999999864444443  56789999999998888888


Q ss_pred             Eec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe--EEEEeeCCCeEE
Q 013347          161 VGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY--LASASYESSSFT  237 (444)
Q Consensus       161 ~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~~d~~~i~  237 (444)
                      +|. +|.|.+||+.........  +                 +-.....| ..+++.+.|..+..-  +++++.|| .|.
T Consensus       260 gG~y~GqV~lWD~~~~~~~~~s--~-----------------ls~~~~sh-~~~v~~vvW~~~~~~~~f~s~ssDG-~i~  318 (555)
T KOG1587|consen  260 GGCYNGQVVLWDLRKGSDTPPS--G-----------------LSALEVSH-SEPVTAVVWLQNEHNTEFFSLSSDG-SIC  318 (555)
T ss_pred             eeccCceEEEEEccCCCCCCCc--c-----------------cccccccC-CcCeEEEEEeccCCCCceEEEecCC-cEe
Confidence            877 599999999854442110  0                 11112334 489999999775444  99999998 999


Q ss_pred             EEEcCCCCce------eee-------cCCCCeEEEEEec-CCCeEEEEecCCcEEEEECC---CCc------eeccccCC
Q 013347          238 IWDVAQGLGT------PIR-------RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETN---TWT------SEPWSSTS  294 (444)
Q Consensus       238 iwd~~~~~~~------~~~-------~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~---~~~------~~~~~~~~  294 (444)
                      .|+++.-...      ...       .....+++++|.+ +-+.|+.|+++|.|.--+..   ...      ......|.
T Consensus       319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~  398 (555)
T KOG1587|consen  319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI  398 (555)
T ss_pred             eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence            9988754221      011       1124678999988 45678999999988773333   222      12345788


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      +.|+++.++|-+..++.++.    +|.+++|....         ...++..+..+. .|++++|||...-++.+..+   
T Consensus       399 g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~---------~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~---  462 (555)
T KOG1587|consen  399 GPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDV---------IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG---  462 (555)
T ss_pred             cceEeeecCCCccceeeeec----cceeEeccccC---------CCCcchhhhhccceeeeeEEcCcCceEEEEEcC---
Confidence            99999999999887776544    46677765321         223344444444 69999999988655544443   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                        ||.|.+||+......   |+....-+......+.|+++|++     |++|...|++.+|.+.
T Consensus       463 --~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s~~g~~-----lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  463 --DGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWSPNGKL-----LAVGDANGTTHILKLS  516 (555)
T ss_pred             --CCceehhhhhccccC---CcccccccccccceeecCCCCcE-----EEEecCCCcEEEEEcC
Confidence              299999999754322   23333334556677888888876     9999999999999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=4.5e-16  Score=147.68  Aligned_cols=240  Identities=16%  Similarity=0.170  Sum_probs=158.4

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      .|.++|.+  +.....++ .|...+.+.+|+|||+.++.++.   +..|.+||+..+.. .                   
T Consensus       183 ~l~~~d~d--g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~-------------------  239 (435)
T PRK05137        183 RLAIMDQD--GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-E-------------------  239 (435)
T ss_pred             EEEEECCC--CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-E-------------------
Confidence            67777765  44444443 67778999999999988888764   36899999873321 1                   


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG  275 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~  275 (444)
                            .+..+ .+.+...+|+|||+.|+.. +.++ ..|.+||+.+++...+..+........|+|||+.|+..+. ++
T Consensus       240 ------~l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g  312 (435)
T PRK05137        240 ------LVGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG  312 (435)
T ss_pred             ------EeecC-CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC
Confidence                  12222 2456788999999988654 4343 1588889988877777766666778999999999877663 33


Q ss_pred             --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347          276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  351 (444)
Q Consensus       276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (444)
                        .|++||+.+++...+..+...+..+.|+|+|+.|++.....+  .++.+++.              ....+.+.....
T Consensus       313 ~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~--------------~~~~~~lt~~~~  378 (435)
T PRK05137        313 SPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD--------------GSGERILTSGFL  378 (435)
T ss_pred             CCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC--------------CCceEeccCCCC
Confidence              688889988777666555566778899999999987654333  33333321              111222222124


Q ss_pred             eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      +..+.|+|||++|+..+.+........++++|+..+...      .+.. ...+...+|||
T Consensus       379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~------~l~~-~~~~~~p~Wsp  432 (435)
T PRK05137        379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER------EVPT-PGDASDPAWSP  432 (435)
T ss_pred             CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE------EccC-CCCccCcccCC
Confidence            677899999999887765421100126888888765442      2222 33466778887

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=4.1e-16  Score=147.24  Aligned_cols=247  Identities=16%  Similarity=0.224  Sum_probs=151.8

Q ss_pred             eEEEEEC-CC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeecccc
Q 013347          113 IVAFISG-ST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAA  186 (444)
Q Consensus       113 ~la~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~  186 (444)
                      .|+..+. .+  .|.++|.+  +.....+. .+...+.+.+|+|||+.++.++.+   ..|.+||+..+.. ..      
T Consensus       165 ~iayv~~~~~~~~L~~~D~d--G~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~------  234 (427)
T PRK02889        165 RIAYVIKTGNRYQLQISDAD--GQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RV------  234 (427)
T ss_pred             EEEEEEccCCccEEEEECCC--CCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EE------
Confidence            4554443 23  45555543  44444443 667789999999999888877653   4589999874321 11      


Q ss_pred             ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEE--EcCCCCceeeecCCCCeEEEEEec
Q 013347          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIW--DVAQGLGTPIRRGFGGLSILKWSP  263 (444)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iw--d~~~~~~~~~~~~~~~v~~~~~sp  263 (444)
                                         +... ...+...+|+|||+.|+.. +.++ ...||  |+.++....+..+......+.|+|
T Consensus       235 -------------------l~~~-~g~~~~~~~SPDG~~la~~~~~~g-~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp  293 (427)
T PRK02889        235 -------------------VANF-KGSNSAPAWSPDGRTLAVALSRDG-NSQIYTVNADGSGLRRLTQSSGIDTEPFFSP  293 (427)
T ss_pred             -------------------eecC-CCCccceEECCCCCEEEEEEccCC-CceEEEEECCCCCcEECCCCCCCCcCeEEcC
Confidence                               1111 1345689999999988754 5554 55555  555565555555555567789999


Q ss_pred             CCCeEEEEec-CCcEEEE--ECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCC
Q 013347          264 TGDYFFAAKF-DGTFYLW--ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       264 ~~~~l~~~~~-d~~v~iw--d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      ||+.|+..+. ++...+|  ++.+++...+..........+|+|+|++|++.....+  .++.+++..            
T Consensus       294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~------------  361 (427)
T PRK02889        294 DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT------------  361 (427)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC------------
Confidence            9998876554 4555555  5555555443333334456899999999987654433  344444321            


Q ss_pred             CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                        ...+.+..........|+|||++|+.++.++..   ..+.+.++.. ...     ..+..+.+.+...+|||-
T Consensus       362 --g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~~g-~~~-----~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        362 --GQVTALTDTTRDESPSFAPNGRYILYATQQGGR---SVLAAVSSDG-RIK-----QRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             --CCeEEccCCCCccCceECCCCCEEEEEEecCCC---EEEEEEECCC-Cce-----EEeecCCCCCCCCccCCC
Confidence              112223222234678999999999988876421   4566667643 322     234456667888899873

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.8e-17  Score=147.59  Aligned_cols=256  Identities=13%  Similarity=0.200  Sum_probs=173.2

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEE-EccCCCCceeEEecCCCCCeEEEEEe-------eCCCeEEEEecCCcEEEEecC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVR-DYEDSGKDACILTSDSQRDVKVLEWR-------PNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw-~~~~~~~~~~~~~~~~~~~v~~l~~s-------~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      |.|+.|+.+...+.++ .|..+.+| ++..........  ....-.+.+..-       .....++.++.||.+.|.+-.
T Consensus        17 vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~   93 (737)
T KOG1524|consen   17 VCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKS   93 (737)
T ss_pred             EEeecccccceEEEec-cCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEEEeccc
Confidence            5689999888877655 45555555 444322111111  111111111111       112358888999999987754


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF  253 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~  253 (444)
                      .                          ++.+....|. +.+.+-.|+|||.-|++++.|| .|++|.-...-...+....
T Consensus        94 ~--------------------------rVE~sv~AH~-~A~~~gRW~~dGtgLlt~GEDG-~iKiWSrsGMLRStl~Q~~  145 (737)
T KOG1524|consen   94 A--------------------------RVERSISAHA-AAISSGRWSPDGAGLLTAGEDG-VIKIWSRSGMLRSTVVQNE  145 (737)
T ss_pred             c--------------------------hhhhhhhhhh-hhhhhcccCCCCceeeeecCCc-eEEEEeccchHHHHHhhcC
Confidence            1                          1334466675 8999999999999999999998 9999986544333455566


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCC-ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      .+|+|++|.|+.+.++.+. .+.+.|=-+... +...+..|++-|.++.|++....++++    +.+..+.+|+.     
T Consensus       146 ~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg----GED~kfKvWD~-----  215 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG----GEDFRFKIWDA-----  215 (737)
T ss_pred             ceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec----CCceeEEeecc-----
Confidence            8899999999988776654 345665555433 347788999999999999999999876    33455666553     


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                            .+..+.+-..|. +|++++|.|| +.++.+|.       +++|+=..+                .+.|..++||
T Consensus       216 ------~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-------nt~R~~~p~----------------~GSifnlsWS  265 (737)
T KOG1524|consen  216 ------QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-------NTARFSSPR----------------VGSIFNLSWS  265 (737)
T ss_pred             ------cCcccccCChhccceeeeeeccc-cceeeeee-------eeeeecCCC----------------ccceEEEEEc
Confidence                  345555556677 9999999999 66777776       466632222                4557799999


Q ss_pred             eCCCCCCCceEEEEeccceeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCT  433 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~  433 (444)
                      +||..     +++|...|.+.+
T Consensus       266 ~DGTQ-----~a~gt~~G~v~~  282 (737)
T KOG1524|consen  266 ADGTQ-----ATCGTSTGQLIV  282 (737)
T ss_pred             CCCce-----eeccccCceEEE
Confidence            99986     666777777653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=9.6e-18  Score=149.35  Aligned_cols=201  Identities=20%  Similarity=0.299  Sum_probs=155.6

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      ..++.++.||.+.|.+-.  ++....+ ..|.+.+.+-.|+|||.-|+++|.||.|++|.-.  +..+.           
T Consensus        76 d~~~i~s~DGkf~il~k~--~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRS-----------  139 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS--ARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRS-----------  139 (737)
T ss_pred             ceEEEEcCCceEEEeccc--chhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHH-----------
Confidence            567888999999987765  4444444 5899999999999999999999999999999965  11111           


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeEEEEEecCCCeEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~  270 (444)
                                    .-......|.|++|.|+.+.++.+..+  .+.|=-+..+ +.++...|.+-|.++.|++..+.+++
T Consensus       140 --------------tl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s  203 (737)
T KOG1524|consen  140 --------------TVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS  203 (737)
T ss_pred             --------------HHhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceee
Confidence                          111124689999999998888777654  6777666654 45567889999999999999999999


Q ss_pred             EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          271 AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       271 ~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      |++|-..++||...........|..+|++++|+|+ +.+++++-     ...++...                    .-.
T Consensus       204 gGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-----nt~R~~~p--------------------~~G  257 (737)
T KOG1524|consen  204 GGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-----NTARFSSP--------------------RVG  257 (737)
T ss_pred             cCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-----eeeeecCC--------------------Ccc
Confidence            99999999999988777777789999999999999 44444422     22232110                    011


Q ss_pred             ceeEEEECCCCCEEEEEecC
Q 013347          351 GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       351 ~v~~~~~spdg~~l~~~~~d  370 (444)
                      .|..++||+||..++.|...
T Consensus       258 SifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  258 SIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             ceEEEEEcCCCceeeccccC
Confidence            58999999999999988877

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=1.4e-16  Score=149.75  Aligned_cols=255  Identities=16%  Similarity=0.212  Sum_probs=176.9

Q ss_pred             cceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCc----eeEEecCCCCCeEEEEEeeCCCe--EEEEecCCcEEEEec
Q 013347          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~----~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~dg~v~iw~~  172 (444)
                      .+|+|+.|+| +..++|.|+.+|+|.+||+......    .......|..+|+.+.|..+-..  +++++.||.|+.|++
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~  322 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT  322 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeec
Confidence            3799999999 5577788889999999999875332    22333579999999999765544  999999999999988


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCC---CC---
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQ---GL---  245 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~---~~---  245 (444)
                      +.-..+........            .......+.  ....+++++|.+ +-..++.|+.+| .|..-+...   ..   
T Consensus       323 ~~l~~P~e~~~~~~------------~~~~~~~~~--~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~~~~~~~~  387 (555)
T KOG1587|consen  323 DMLSLPVEGLLLES------------KKHKGQQSS--KAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGYTPAPEVS  387 (555)
T ss_pred             cccccchhhccccc------------ccccccccc--cccceeeEeeccCCCceEEEEcCCc-EEEEEeccCCccccccc
Confidence            73333221111100            000001111  124789999988 556788888887 776633322   22   


Q ss_pred             ---ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC-CCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          246 ---GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       246 ---~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                         ......|.+.|.++.++|-+..++..+.|.+++||... .... ..+..+...+++++|||...-++++.+.++.+.
T Consensus       388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence               11234467899999999987766555559999999877 3333 345566677999999999998888888877777


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .|++-..           ...++.+.+-+. ....+.|+++|+.|++|...      |++.+|++..
T Consensus       468 iWDLl~~-----------~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~------G~~~~~~l~~  517 (555)
T KOG1587|consen  468 IWDLLQD-----------DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN------GTTHILKLSE  517 (555)
T ss_pred             hhhhhcc-----------ccCCcccccccccccceeecCCCCcEEEEecCC------CcEEEEEcCc
Confidence            7776322           223333333334 66788899999999999888      9999999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.77  E-value=7.9e-17  Score=134.86  Aligned_cols=221  Identities=15%  Similarity=0.239  Sum_probs=164.5

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .+|+|.+|++|++.+|++.....|.||...... -........|...|+.+.|+|..+++++++.|..-++|....    
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~----   86 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS----   86 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC----
Confidence            369999999999999999999999999988643 223333468999999999999999999999999999999841    


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGF  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~~  253 (444)
                                        ++.|...-.+..+. ..++++.|+|.++.|++++... .|.||-++....-.     ...+.
T Consensus        87 ------------------~~~WkptlvLlRiN-rAAt~V~WsP~enkFAVgSgar-~isVcy~E~ENdWWVsKhikkPir  146 (361)
T KOG1523|consen   87 ------------------GGTWKPTLVLLRIN-RAATCVKWSPKENKFAVGSGAR-LISVCYYEQENDWWVSKHIKKPIR  146 (361)
T ss_pred             ------------------CCeeccceeEEEec-cceeeEeecCcCceEEeccCcc-EEEEEEEecccceehhhhhCCccc
Confidence                              34565555555564 7899999999999999999887 99999887654321     22345


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      +.|.+++|+|++-+|++|+.|+.++++..--.......         +=+|-|..+=++                     
T Consensus       147 Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp---------ap~pWgsk~PFG---------------------  196 (361)
T KOG1523|consen  147 STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP---------APTPWGSKMPFG---------------------  196 (361)
T ss_pred             cceeeeeccCCcceecccccCcceeEEEEeeeccccCC---------CCCCCccCCcHH---------------------
Confidence            78999999999999999999999999975432221111         112223222221                     


Q ss_pred             CcCCCCccccccc-ccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          334 HLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       334 ~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                             ..+..+ .....+..+.|+|+|..|+-.+.|      .++.+=|....
T Consensus       197 -------~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd------s~v~~~da~~p  238 (361)
T KOG1523|consen  197 -------QLMSEASSSGGWVHGVLFSPSGNRLAWVGHD------STVSFVDAAGP  238 (361)
T ss_pred             -------HHHHhhccCCCceeeeEeCCCCCEeeEecCC------CceEEeecCCC
Confidence                   111112 112278899999999999999988      88888887654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.7e-16  Score=148.34  Aligned_cols=294  Identities=13%  Similarity=0.066  Sum_probs=198.9

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccC--CCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYED--SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~--~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ...++|.++||+++++|+|..||.|.+|.--.  +........+-|...|.+++|+++|.+|+++|..+.+.+|.+.+++
T Consensus       205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~  284 (792)
T KOG1963|consen  205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK  284 (792)
T ss_pred             cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence            33589999999999999999999999997543  2334445557899999999999999999999999999999999766


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-----
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-----  251 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----  251 (444)
                       .+.++..                          .+.|..+.++||+.+.+....|+ .|.+....+........     
T Consensus       285 -kqfLPRL--------------------------gs~I~~i~vS~ds~~~sl~~~DN-qI~li~~~dl~~k~tIsgi~~~  336 (792)
T KOG1963|consen  285 -KQFLPRL--------------------------GSPILHIVVSPDSDLYSLVLEDN-QIHLIKASDLEIKSTISGIKPP  336 (792)
T ss_pred             -ccccccc--------------------------CCeeEEEEEcCCCCeEEEEecCc-eEEEEeccchhhhhhccCccCC
Confidence             3333222                          37999999999999999999998 99998876543322111     


Q ss_pred             -------CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc-----cC------CCceeEEEECCCCCEEEEE
Q 013347          252 -------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-----ST------SGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       252 -------~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~-----~~------~~~v~~~~~sp~g~~l~~~  312 (444)
                             ..+-.+.++++|..+.++..+..+.|.+||+.+.+.. .+.     .+      .-.++.++.+..|.++++.
T Consensus       337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence                   1234677899997778888889999999999876652 111     11      2246778888889998875


Q ss_pred             EcC------CceEEEEEeecCCCCcCCCcCCCCcccc-cccccCC--ceeEEEECCCCC-EEEEEecCCCccccceEEEE
Q 013347          313 FAG------SLTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ--GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       313 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vw  382 (444)
                      -..      ......+++|...+...      +.... +....|.  .+..+..+|... ..++++.|      |.++||
T Consensus       417 E~~~d~~~~~~~e~~LKFW~~n~~~k------t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d------g~~KiW  484 (792)
T KOG1963|consen  417 EARIDKFNFFDGEVSLKFWQYNPNSK------TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD------GDFKIW  484 (792)
T ss_pred             eeeehhhhccCceEEEEEEEEcCCcc------eeEEEEEEecCCCceeEEEEEecCcccceeEEeccC------CeEEEE
Confidence            321      01123445554321110      01111 1122344  333334444443 78888888      999999


Q ss_pred             EcCCCCeE---EEEEeeeee--CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          383 DARRTPLI---SLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       383 d~~~~~~~---~~~~~~~~~--~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      -+...+-+   .....+...  -|..++++++||.||.     +|+++.+ +.|.+|+..-
T Consensus       485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-----lla~s~~-~~Itiwd~~~  539 (792)
T KOG1963|consen  485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-----LLAVSFD-DTITIWDYDT  539 (792)
T ss_pred             EEecccccCcCccceEEeeeeccccCcccchhhcCCCc-----EEEEecC-CEEEEecCCC
Confidence            88432211   011111222  2678899999999985     5777755 6888887654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.76  E-value=1.2e-16  Score=133.88  Aligned_cols=249  Identities=17%  Similarity=0.282  Sum_probs=168.5

Q ss_pred             eEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-----
Q 013347          146 VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-----  220 (444)
Q Consensus       146 v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----  220 (444)
                      ...+.|+|||..+++-+.|..+.+|++....-.......             ........++-.....|...+|-     
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~-------------~~~~~~~~~r~~eg~tvydy~wYs~M~s  118 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP-------------LNFSKHLSYRYQEGETVYDYCWYSRMKS  118 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc-------------cccccceeEEeccCCEEEEEEeeecccc
Confidence            346889999999999999999999998722111100000             00011112232233567777764     


Q ss_pred             --cCCCeEEEEeeCCCeEEEEEcCCCCceee---ecCCC---CeEEEEEecCCCeEEEEecCCcEEEEEC-CCCcee---
Q 013347          221 --PDGRYLASASYESSSFTIWDVAQGLGTPI---RRGFG---GLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTSE---  288 (444)
Q Consensus       221 --p~~~~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~~---~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~~~---  288 (444)
                        |+..++++.+.+. -|++||.-+++....   ..|..   ...+++|+|||.+|++|- .+.|++||+ +.|...   
T Consensus       119 ~qP~t~l~a~ssr~~-PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  119 DQPSTNLFAVSSRDQ-PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             CCCccceeeeccccC-ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcch
Confidence              6788999999998 999999999976642   23332   346899999999998775 689999999 555431   


Q ss_pred             c-----cccCCCceeEEEECCCCC-EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC
Q 013347          289 P-----WSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG  361 (444)
Q Consensus       289 ~-----~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg  361 (444)
                      .     ..+..+.+.+++|+|... .+++++-. ..+++.. +.            ...++..+-+|. .|+.+.|.+||
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~-~~------------~~~pl~llggh~gGvThL~~~edG  262 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYN-DD------------GRRPLQLLGGHGGGVTHLQWCEDG  262 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEe-cC------------CCCceeeecccCCCeeeEEeccCc
Confidence            1     113467789999999776 55655322 2222222 11            456677778888 99999999999


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC-CCcceee--eeCCCCCCCceEEEEeccceeeeeeee
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPKPVAF--SFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~i~~v~~--spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +.|++|+.-.     -.|..||++.-.    .++-.+..|.+ .=..+-|  .|+|+     +|+-|-.+|.|.+|++-
T Consensus       263 n~lfsGaRk~-----dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~-----~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  263 NKLFSGARKD-----DKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGE-----ILASGDTDGSVRVWDLK  327 (406)
T ss_pred             CeecccccCC-----CeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCc-----eeeccCCCccEEEEecC
Confidence            9999998753     689999998633    22344555544 2234444  45555     48889999999999874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.76  E-value=1.8e-16  Score=133.18  Aligned_cols=285  Identities=15%  Similarity=0.257  Sum_probs=180.0

Q ss_pred             EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeec
Q 013347          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~  183 (444)
                      ++|||+|+++|+.+.- .+.|-|.++ -+....+  ..-+.|.-+.|..|.-+++.+.. ++.|.+|++..++-...+..
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf--~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSET-LQLHQLF--LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccch-hhHHHHH--HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            6899999999998644 777888776 2222222  12356778999999666666554 68999999985544444433


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEEEcCCCCceeeecCCCCeEEEEEe
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRGFGGLSILKWS  262 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~s  262 (444)
                      +                          ..++.++.|||||+.++.. ..+- .|.+|.+.+.+...+.-.+..+..++|+
T Consensus        90 g--------------------------~agls~~~WSPdgrhiL~tseF~l-riTVWSL~t~~~~~~~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   90 G--------------------------QAGLSSISWSPDGRHILLTSEFDL-RITVWSLNTQKGYLLPHPKTNVKGYAFH  142 (447)
T ss_pred             C--------------------------CCcceeeeECCCcceEeeeeccee-EEEEEEeccceeEEecccccCceeEEEC
Confidence            3                          3789999999999776655 4565 9999999998777766666778899999


Q ss_pred             cCCCeEEEEecC------------------------------------CcEEEEECCCCceeccccCCCceeEEEECCCC
Q 013347          263 PTGDYFFAAKFD------------------------------------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEG  306 (444)
Q Consensus       263 p~~~~l~~~~~d------------------------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g  306 (444)
                      |||++.+..+.-                                    ..+.+||.--.-......-.-.+..++|+|.+
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN  222 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc
Confidence            999988766531                                    12333432211110011122457889999999


Q ss_pred             CEEEEEEcCCceEEEEEe--ec------------------------------------CCCCcCCCcCCCCc--------
Q 013347          307 RMILLAFAGSLTLGSIHF--AS------------------------------------KPPSLDAHLLPVDL--------  340 (444)
Q Consensus       307 ~~l~~~~~~~~~~~~~~~--~~------------------------------------~~~~~~~~~~~~~~--------  340 (444)
                      +++++|+.+ ..+++++-  |.                                    .+...+.+.+....        
T Consensus       223 qflavGsyD-~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~  301 (447)
T KOG4497|consen  223 QFLAVGSYD-QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMT  301 (447)
T ss_pred             ceEEeeccc-hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhc
Confidence            999988554 33332211  11                                    01122222222110        


Q ss_pred             -ccccccc------cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          341 -PDIVSLT------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       341 -~~~~~~~------~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                       ..+..++      ... .+.-++|++|..|+++-.+.    +.+.+-+||++..++.      .+-....+|....|.|
T Consensus       302 pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~----~PnalW~Wdlq~l~l~------avLiQk~piraf~WdP  371 (447)
T KOG4497|consen  302 PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK----YPNALWLWDLQNLKLH------AVLIQKHPIRAFEWDP  371 (447)
T ss_pred             ceeeecccCCCCCCCcccccceeeecCCceEEeeecCC----CCceEEEEechhhhhh------hhhhhccceeEEEeCC
Confidence             0011111      112 67889999999999987654    4589999999976543      1112345677888887


Q ss_pred             CCCCCCCceEEEEeccceeeeeee
Q 013347          413 HDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       413 dg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .-.     -|++|-...++++|..
T Consensus       372 ~~p-----rL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  372 GRP-----RLVVCTGKSRLYFWAP  390 (447)
T ss_pred             CCc-----eEEEEcCCceEEEEcC
Confidence            532     3667766777777653

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.75  E-value=3.4e-17  Score=137.43  Aligned_cols=239  Identities=15%  Similarity=0.263  Sum_probs=167.9

Q ss_pred             ceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCC
Q 013347          101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~  175 (444)
                      ....++|+-|    ..++|.|+.-|.|+|.|+.. ++....+ .+|...|..+.+.|+.. .+++++.|..|++|++++.
T Consensus        91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen   91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             ceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            4567788764    35788899999999999997 4444444 59999999999999854 5666777999999999844


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--------
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--------  247 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--------  247 (444)
                      ..+..                      ..-+.+|. ..|.++.|+++|.+|++++.|. ++++|++...+..        
T Consensus       169 ~Cv~V----------------------fGG~egHr-deVLSvD~~~~gd~i~ScGmDh-slk~W~l~~~~f~~~lE~s~~  224 (385)
T KOG1034|consen  169 VCVAV----------------------FGGVEGHR-DEVLSVDFSLDGDRIASCGMDH-SLKLWRLNVKEFKNKLELSIT  224 (385)
T ss_pred             eEEEE----------------------eccccccc-CcEEEEEEcCCCCeeeccCCcc-eEEEEecChhHHhhhhhhhcc
Confidence            33221                      12256775 8999999999999999999998 9999999843110        


Q ss_pred             -----------------e----eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-Cce----------e----ccc
Q 013347          248 -----------------P----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS----------E----PWS  291 (444)
Q Consensus       248 -----------------~----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~----------~----~~~  291 (444)
                                       +    ..-|...|.|+.|-  |+++++=+-++.|..|.... ++.          .    .+.
T Consensus       225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~  302 (385)
T KOG1034|consen  225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD  302 (385)
T ss_pred             cCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence                             0    01133445555554  67888888899999998721 111          0    111


Q ss_pred             cCCCce--eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEE
Q 013347          292 STSGFV--TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAV  366 (444)
Q Consensus       292 ~~~~~v--~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~  366 (444)
                      -....+  ...+|.|-++.|+.+ ...+.++.|++.+..+           ....++..+.   .|...+||.||..|+.
T Consensus       303 ~~~c~iWfirf~~d~~~~~la~g-nq~g~v~vwdL~~~ep-----------~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~  370 (385)
T KOG1034|consen  303 YPMCDIWFIRFAFDPWQKMLALG-NQSGKVYVWDLDNNEP-----------PKCTTLTHSKSGSTVRQTSFSRDGSILVL  370 (385)
T ss_pred             cCccceEEEEEeecHHHHHHhhc-cCCCcEEEEECCCCCC-----------ccCceEEeccccceeeeeeecccCcEEEE
Confidence            112233  345667888888865 4557889998866432           1223333322   7999999999999999


Q ss_pred             EecCCCccccceEEEEEcC
Q 013347          367 SYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~  385 (444)
                      ...|      ++|.-||..
T Consensus       371 vcdd------~~Vwrwdrv  383 (385)
T KOG1034|consen  371 VCDD------GTVWRWDRV  383 (385)
T ss_pred             EeCC------CcEEEEEee
Confidence            9888      899888854

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1e-15  Score=132.96  Aligned_cols=182  Identities=18%  Similarity=0.225  Sum_probs=134.5

Q ss_pred             EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-
Q 013347          215 TALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-  291 (444)
Q Consensus       215 ~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-  291 (444)
                      ..++|+.+|..+++++.|| ++++|+..+.... ....|...|.++.|+|||++|++.+.| ..+||+.+++.... .. 
T Consensus       148 k~vaf~~~gs~latgg~dg-~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDG-TLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccc-eEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            6899999999999999998 9999997665443 467789999999999999999999999 89999999985522 22 


Q ss_pred             -cCCCceeEEEECCCC---CEEE-EEEcCCceEEE--EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEE
Q 013347          292 -STSGFVTGATWDPEG---RMIL-LAFAGSLTLGS--IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL  364 (444)
Q Consensus       292 -~~~~~v~~~~~sp~g---~~l~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  364 (444)
                       ..+.....+.|+.++   .+.+ +.....+.+..  +.+|+...         -.+..+.+..+..|++++.|+||+++
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~---------~l~~~~~~~~~~siSsl~VS~dGkf~  296 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN---------FLRLRKKIKRFKSISSLAVSDDGKFL  296 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc---------ccchhhhhhccCcceeEEEcCCCcEE
Confidence             333446778888776   3322 22222233333  33343210         11223334455589999999999999


Q ss_pred             EEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347          365 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  417 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~  417 (444)
                      |.|+.+      |.|.|++..+-+...    ..-+.|...|+.+.|+||.++.
T Consensus       297 AlGT~d------GsVai~~~~~lq~~~----~vk~aH~~~VT~ltF~Pdsr~~  339 (398)
T KOG0771|consen  297 ALGTMD------GSVAIYDAKSLQRLQ----YVKEAHLGFVTGLTFSPDSRYL  339 (398)
T ss_pred             EEeccC------CcEEEEEeceeeeeE----eehhhheeeeeeEEEcCCcCcc
Confidence            999998      999999999765552    1234789999999999999984

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=6.1e-16  Score=132.89  Aligned_cols=271  Identities=12%  Similarity=0.125  Sum_probs=185.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCC-----CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-----~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      .|.++.||.++++||+|+.|-.++||+++..     .+.+.+..+.|...|.|++|...+..+++++.+++|.+-|+++.
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~  137 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK  137 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc
Confidence            3999999999999999999999999999743     23444444567789999999988777888888999999999854


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-e-e--eec
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-T-P--IRR  251 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~-~--~~~  251 (444)
                      +.+.....                       . ...+.|..+..+|-.+.|++.+.++ .|.+||.+.... . .  ...
T Consensus       138 qsi~V~~~-----------------------~-~~~~~VY~m~~~P~DN~~~~~t~~~-~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  138 QSIYVANE-----------------------N-NNRGDVYHMDQHPTDNTLIVVTRAK-LVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             eeeeeecc-----------------------c-CcccceeecccCCCCceEEEEecCc-eEEEEeccCCCCCCceeeecC
Confidence            43222111                       0 1136899999999999999999998 999999987641 1 1  222


Q ss_pred             CCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceec--------cccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          252 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       252 ~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~--------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      .......+.|+|.. .+|++.+..+-+.+||.+......        +......-.++.|+|+|..+++--....- -.+
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P-~~~  271 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP-LYF  271 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC-EEe
Confidence            35667889999964 566888888899999998765421        11222234678999999988753222111 111


Q ss_pred             EeecCCCCcCCCcCCCCcccccccc-cC------CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC-------
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLT-GS------QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP-------  388 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~-------  388 (444)
                      ++-..           ... +..+. ..      ..+.++.|--|.. +++|+.+      -.|++|.+....       
T Consensus       272 D~~S~-----------R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~------~~i~~WklP~~~ds~G~~~  332 (609)
T KOG4227|consen  272 DFISQ-----------RCF-VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDH------WGIHIWKLPRANDSYGFTQ  332 (609)
T ss_pred             eeecc-----------cce-eEeccCCCCcceeeeeeeeeeeeccee-eeccCcc------cceEEEecCCCccccCccc
Confidence            21110           000 01111 00      1467788876654 8888887      789999875211       


Q ss_pred             -----------eEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          389 -----------LISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       389 -----------~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                                 ++.......++||.+-+..|.|+|...+
T Consensus       333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~  371 (609)
T KOG4227|consen  333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL  371 (609)
T ss_pred             cCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence                       1223335578999999999999998654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=2e-14  Score=136.62  Aligned_cols=285  Identities=22%  Similarity=0.356  Sum_probs=202.6

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE-eeCCC-eEEEEec-CCcEEEEecCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-RPNGG-RSLSVGC-KGGICIWAPSYP  175 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~-s~~~~-~ll~~~~-dg~v~iw~~~~~  175 (444)
                      ...+.++.+.+.+..++.++.|+.+.+|+..........+...+...+..+.+ ++++. .++..+. |+.+.+|+... 
T Consensus        65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-  143 (466)
T COG2319          65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST-  143 (466)
T ss_pred             cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC-
Confidence            34699999999999999999999999999987321333332223346777777 77766 3444344 79999999983 


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CCCeEEEEEcCCCCcee-eecCC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTP-IRRGF  253 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~-~~~~~  253 (444)
                                             .......+..|. ..|..++|+|+++.+++++. ++ .+++|++..+.... +..|.
T Consensus       144 -----------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  198 (466)
T COG2319         144 -----------------------PGKLIRTLEGHS-ESVTSLAFSPDGKLLASGSSLDG-TIKLWDLRTGKPLSTLAGHT  198 (466)
T ss_pred             -----------------------CCeEEEEEecCc-ccEEEEEECCCCCEEEecCCCCC-ceEEEEcCCCceEEeeccCC
Confidence                                   012445566775 78999999999998888875 87 99999999865554 44578


Q ss_pred             CCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          254 GGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       254 ~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      ..+.+++|+|++. .+++++.|+.|++||...+....  +..|.... ...|+|++..++ .+..+..+..|+.....  
T Consensus       199 ~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~--  274 (466)
T COG2319         199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLA-SGSSDGTIRLWDLRSSS--  274 (466)
T ss_pred             CceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEE-EecCCCcEEEeeecCCC--
Confidence            9999999999998 44555899999999988766643  66777665 448999997666 44555666666653221  


Q ss_pred             cCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347          331 LDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  409 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~  409 (444)
                                ..+..+.+|. .+.++.|+|++..+++++.|      +.+.+|+...........   ...|...+..+.
T Consensus       275 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  335 (466)
T COG2319         275 ----------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSD------GTVRLWDLETGKLLSSLT---LKGHEGPVSSLS  335 (466)
T ss_pred             ----------cEEEEEecCCccEEEEEECCCCCEEEEeeCC------CcEEEEEcCCCceEEEee---ecccCCceEEEE
Confidence                      1122224555 89999999999999988777      779999988766552222   346777788888


Q ss_pred             eeeCCCCCCCceEEEE-eccceeeeeeee
Q 013347          410 FSFHDKFKQGPLLSVC-WSSGFCCTYPLI  437 (444)
Q Consensus       410 ~spdg~~~~~~~l~~~-~~~g~i~~~~~~  437 (444)
                      | +..    +..+..+ ..++.+.+|++.
T Consensus       336 ~-~~~----~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         336 F-SPD----GSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             E-CCC----CCEEEEeecCCCcEEeeecC
Confidence            8 422    2234444 566777776654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.4e-16  Score=149.05  Aligned_cols=216  Identities=21%  Similarity=0.264  Sum_probs=144.2

Q ss_pred             ceEEEEEecCCCeEEEEECC---CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~  176 (444)
                      .+.+.+|||||+.||+++.+   ..|++||+.+ +......  ...+....++|+|||+.++++. .+|.+.||.++...
T Consensus       205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-g~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~  281 (429)
T PRK01742        205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-GARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG  281 (429)
T ss_pred             ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC-CceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence            58999999999999988743   4799999986 3322221  2223345789999988888775 46877776554211


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecCCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGG  255 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~  255 (444)
                      ..                        ...+..+. ..+....|+|||+.|+.++...+...||++.... ......+.. 
T Consensus       282 ~~------------------------~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-  335 (429)
T PRK01742        282 GT------------------------PSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-  335 (429)
T ss_pred             CC------------------------eEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence            10                        11223332 5678899999999888776433378888765422 223333333 


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                       ..+.|+|||++|+..+.++ +.+||+.+++...+... ....++.|+|+|++|+++..+ +....|.+.+.        
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~~--------  403 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-GLGKVLQLVSA--------  403 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcC-CCceEEEEEEC--------
Confidence             4678999999998877655 66699998876544322 234678899999999987654 44556665432        


Q ss_pred             CCCCcccccccccCC-ceeEEEECCC
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDAS  360 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spd  360 (444)
                         ++..++.+..|. .+..++|+|-
T Consensus       404 ---~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        404 ---DGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ---CCCceEEccCCCCCCCCcccCCC
Confidence               455666777666 6888999984

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=3.4e-16  Score=134.58  Aligned_cols=200  Identities=19%  Similarity=0.307  Sum_probs=152.6

Q ss_pred             cceEEEEEec-CCCeEEEEECCCeEEEEEccCCCC-----ceeEEecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEec
Q 013347          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~-----~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~  172 (444)
                      .+|..++|+| +...||+||.|.+|.||.+..++.     .......+|...|--++|+|.... |++++.|.+|.+|++
T Consensus        82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv  161 (472)
T KOG0303|consen   82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV  161 (472)
T ss_pred             ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence            3699999999 567899999999999999987521     223334699999999999997654 677788999999999


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-c
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-R  251 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~  251 (444)
                      .++....                         ++. | ...|.++.|+.||.+|++++.|. .|+|||.++++..... .
T Consensus       162 ~tgeali-------------------------~l~-h-pd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~~~  213 (472)
T KOG0303|consen  162 GTGEALI-------------------------TLD-H-PDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEGVA  213 (472)
T ss_pred             cCCceee-------------------------ecC-C-CCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeeccc
Confidence            9544321                         233 5 48999999999999999999998 9999999999877644 4


Q ss_pred             CCC-CeEEEEEecCCCeEEEEe---cCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          252 GFG-GLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       252 ~~~-~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      |.+ .-..+.|-.+|..+-+|-   .+..+-+||...-+.   ..-....+.|.-.-|.|+...++.++-+|+.|+.+.+
T Consensus       214 heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  214 HEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI  293 (472)
T ss_pred             ccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence            542 344566777888444442   367899999876443   2222445567777889999999998888888888887


Q ss_pred             ecC
Q 013347          325 ASK  327 (444)
Q Consensus       325 ~~~  327 (444)
                      .+.
T Consensus       294 t~d  296 (472)
T KOG0303|consen  294 TNE  296 (472)
T ss_pred             cCC
Confidence            653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.74  E-value=8e-17  Score=138.91  Aligned_cols=249  Identities=14%  Similarity=0.262  Sum_probs=164.9

Q ss_pred             CCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          142 SQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       142 ~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      ...+|.++.|.+++. .+++++.|..|+||.++.......                +........+..|+ ..|+++.|+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------------~~~V~y~s~Ls~H~-~aVN~vRf~   74 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------------DMKVEYLSSLSRHT-RAVNVVRFS   74 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------------ceeEEEeecccCCc-ceeEEEEEc
Confidence            346899999998876 788888999999999984332211                11234556788886 899999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcC--------C-----CC----ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          221 PDGRYLASASYESSSFTIWDVA--------Q-----GL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~--------~-----~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      |+|..|++|+.+| .|.+|...        +     .+    ...+..|...+..++|+|+++++++++.|+.+++||+.
T Consensus        75 p~gelLASg~D~g-~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   75 PDGELLASGGDGG-EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             CCcCeeeecCCCc-eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            9999999999887 99999876        2     10    11244577899999999999999999999999999999


Q ss_pred             CCce-eccccCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcC-----CCcC-CCCcccccccccCC---ce
Q 013347          284 TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLD-----AHLL-PVDLPDIVSLTGSQ---GI  352 (444)
Q Consensus       284 ~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~---~v  352 (444)
                      .|+. ..+..|...+..++|.|-++++++-+.+. .....+..........     .... .......+-+...+   -.
T Consensus       154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             cceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence            9998 45668999999999999999988643332 2222222111000000     0000 00111111122222   45


Q ss_pred             eEEEECCCCCEEEEEecC---CCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          353 EKIAWDASGERLAVSYKG---GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~~d---~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      ..++|+|||.+|++.+.-   +.+..-++.++|+-+.-    ..|...+.+.......+.|+|
T Consensus       234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l----~rP~~~lp~~~k~~lavr~~p  292 (434)
T KOG1009|consen  234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL----KRPAARLPSPKKPALAVRFSP  292 (434)
T ss_pred             hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc----cCceeecCCCCcceEEEEeee
Confidence            778999999999876421   00000144566655431    234455666666677777776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.74  E-value=2.9e-14  Score=130.82  Aligned_cols=287  Identities=20%  Similarity=0.296  Sum_probs=187.8

Q ss_pred             EEEEECC----CeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEec----CCcEEEEecCCC-CCcceeec
Q 013347          114 VAFISGS----TQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----KGGICIWAPSYP-GNAASVRS  183 (444)
Q Consensus       114 la~~~~d----g~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----dg~v~iw~~~~~-~~~~~~~~  183 (444)
                      +++|+..    +.|.+|+++.. +................++++|+++.|+++..    .+.|..|++... +..     
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L-----   76 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL-----   76 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE-----
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee-----
Confidence            4556655    78999999543 22222221223455677999999888888776    378999988743 222     


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-Ccee---eec--------
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTP---IRR--------  251 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~---~~~--------  251 (444)
                                       ..+...... ......++++|++++|+++...++.|.++++... ....   ...        
T Consensus        77 -----------------~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~  138 (345)
T PF10282_consen   77 -----------------TLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP  138 (345)
T ss_dssp             -----------------EEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred             -----------------EEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence                             222223222 2567889999999999999886679999999874 2221   111        


Q ss_pred             ---CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCc--eec----cccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          252 ---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT--SEP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       252 ---~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~--~~~----~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                         ......++.++|+++++++... ...|++|++....  ...    ........+.+.|+|+++++++....+..+..
T Consensus       139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v  218 (345)
T PF10282_consen  139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV  218 (345)
T ss_dssp             TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence               1245788999999999876643 4579999997765  321    12455668999999999999999888888888


Q ss_pred             EEeecCCCCcCCCcCCCCcccccc----cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEe
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVS----LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLI  395 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~  395 (444)
                      +++......+.      ....+.+    ..+......++++|||++|+++....     ++|.+|++.  ++++..   +
T Consensus       219 ~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~---~  284 (345)
T PF10282_consen  219 FDYDPSDGSLT------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTL---V  284 (345)
T ss_dssp             EEEETTTTEEE------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEE---E
T ss_pred             EeecccCCcee------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEE---E
Confidence            88762211100      0011111    11222578899999999999988774     799999993  345432   3


Q ss_pred             eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347          396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                      ..+......++.++++|+|++    ++..+-.++.|.+|.+...+.
T Consensus       285 ~~~~~~G~~Pr~~~~s~~g~~----l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  285 QTVPTGGKFPRHFAFSPDGRY----LYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             EEEEESSSSEEEEEE-TTSSE----EEEEETTTTEEEEEEEETTTT
T ss_pred             EEEeCCCCCccEEEEeCCCCE----EEEEecCCCeEEEEEEeCCCC
Confidence            334434556789999999998    455556788999998865443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.4e-13  Score=118.15  Aligned_cols=288  Identities=16%  Similarity=0.232  Sum_probs=196.5

Q ss_pred             CCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCC-CCcceeecccccccccccc
Q 013347          120 STQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP-GNAASVRSGAASFLGALSR  194 (444)
Q Consensus       120 dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~  194 (444)
                      +.-|++|++++. ++........+.+.++-|+|+|+++.|.++..+   |.|.-|.++.. +..                
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L----------------   78 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL----------------   78 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE----------------
Confidence            567999999954 333333334677889999999998788877654   78888888732 222                


Q ss_pred             CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCce---eeecCCCC----------eEEEE
Q 013347          195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGT---PIRRGFGG----------LSILK  260 (444)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~---~~~~~~~~----------v~~~~  260 (444)
                            ..+...... ..+.+.++++++|++++++....+.|.++-++. +...   .+..|.+.          +....
T Consensus        79 ------t~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~  151 (346)
T COG2706          79 ------TFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN  151 (346)
T ss_pred             ------EEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence                  122211111 134589999999999999998888999999976 3222   23334443          78889


Q ss_pred             EecCCCeEEEEec-CCcEEEEECCCCceecc----ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          261 WSPTGDYFFAAKF-DGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       261 ~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      +.|++++|++..- -.+|.+|++..++....    .......+.+.|+|++++.++.+.-++++-.+.+......++.- 
T Consensus       152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l-  230 (346)
T COG2706         152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL-  230 (346)
T ss_pred             eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe-
Confidence            9999999987754 23699999998776322    24455678999999999999888877888888775431111100 


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                      .. -...-..+.+..+..+|..+|||++|.++...-     ..|.+|.+....-. .........++...+...|+++|+
T Consensus       231 Q~-i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~-----dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~  303 (346)
T COG2706         231 QT-IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH-----DSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGR  303 (346)
T ss_pred             ee-eccCccccCCCCceeEEEECCCCCEEEEecCCC-----CeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCC
Confidence            00 000111234444788899999999999987653     68999987643221 333444555666689999999999


Q ss_pred             CCCCceEEEEeccceeeeeeeeeeccC
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIFRSHL  442 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~~~~~  442 (444)
                      +    ++++.=++..|.+|.+.-.+..
T Consensus       304 ~----Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         304 F----LIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             E----EEEEccCCCcEEEEEEcCCCce
Confidence            8    5666666778888877655544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=4.9e-15  Score=140.62  Aligned_cols=181  Identities=14%  Similarity=0.215  Sum_probs=131.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCc
Q 013347          212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~  286 (444)
                      ..+.+.+|+|||+.|+..+..+  ..|.+||+.+++...+....+.+...+|+|||+.|+ +.+.++  .|++||+.+++
T Consensus       202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT  281 (435)
T ss_pred             CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence            6899999999999999887532  389999999988777777777888999999999875 555555  48888999988


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ...+..+........|+|+|+.|++..+..+  .++.+++              .....+.+..+. .+....|+|||++
T Consensus       282 ~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~--------------~g~~~~~lt~~~~~~~~~~~SpdG~~  347 (435)
T PRK05137        282 TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA--------------DGSNPRRISFGGGRYSTPVWSPRGDL  347 (435)
T ss_pred             eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC--------------CCCCeEEeecCCCcccCeEECCCCCE
Confidence            8777777777788999999999988765433  3444443              222233333223 4667889999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      |+..+.+...   ..|.+||+.++...      .+. ....+..++|||||++
T Consensus       348 ia~~~~~~~~---~~i~~~d~~~~~~~------~lt-~~~~~~~p~~spDG~~  390 (435)
T PRK05137        348 IAFTKQGGGQ---FSIGVMKPDGSGER------ILT-SGFLVEGPTWAPNGRV  390 (435)
T ss_pred             EEEEEcCCCc---eEEEEEECCCCceE------ecc-CCCCCCCCeECCCCCE
Confidence            9987754321   47889998765432      121 1234678899999987

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.2e-16  Score=143.46  Aligned_cols=252  Identities=11%  Similarity=0.114  Sum_probs=171.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCC-------CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-------~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      .|+.++|+|....|++++.||.+++|+++..       .+....+ .+|.++|.|+++.+++..+++++-||+|+.|++.
T Consensus       296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCceEEEeeccCceeeeeccC
Confidence            5899999999999999999999999999321       1222333 5999999999999999999999999999999887


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--c
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--R  251 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~  251 (444)
                      ....+....               +.-.+...+.||. +.|..+++|+....|++++.|| ++++|+........+.  .
T Consensus       375 ~n~dp~ds~---------------dp~vl~~~l~Ght-davw~l~~s~~~~~Llscs~Dg-Tvr~w~~~~~~~~~f~~~~  437 (577)
T KOG0642|consen  375 PNQDPDDSY---------------DPSVLSGTLLGHT-DAVWLLALSSTKDRLLSCSSDG-TVRLWEPTEESPCTFGEPK  437 (577)
T ss_pred             CCCCccccc---------------Ccchhccceeccc-cceeeeeecccccceeeecCCc-eEEeeccCCcCccccCCcc
Confidence            222211111               0112455788996 8999999999999999999998 9999998766552211  1


Q ss_pred             CCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceeccc--------cCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          252 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       252 ~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      ..+...++.+-... .+.++...-+.-.+++........+.        .....++.+.++|.+...+.+ -.+..+...
T Consensus       438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~-hed~~Ir~~  516 (577)
T KOG0642|consen  438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA-HEDRSIRFF  516 (577)
T ss_pred             ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec-ccCCceecc
Confidence            22334455554222 11222222222223333333221111        112356778889998777655 333444433


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +..             .+..+.....|. .++++++.|+|.+|++++.|      +.+++|.+......
T Consensus       517 dn~-------------~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d------~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  517 DNK-------------TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHD------GSVRLWKLDVKTCV  566 (577)
T ss_pred             ccc-------------ccccchheeeccceecceeecCCCceEEeecCC------ceeehhhccchhee
Confidence            321             455566666677 89999999999999999999      99999999865443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.6e-15  Score=143.02  Aligned_cols=217  Identities=14%  Similarity=0.185  Sum_probs=145.3

Q ss_pred             ceEEEEEecCCCeEEEEE---CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CC--cEEEEecCC
Q 013347          101 DLQGVSWHQHKHIVAFIS---GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg--~v~iw~~~~  174 (444)
                      .+.+.+|||||+.||+.+   .+..+.+|++.+ ++...+.  ...+.+..++|+|||++++.+.. +|  .|.+||++.
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~~~l~--~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t  276 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  276 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCeEEcc--CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            588999999999999865   345788999876 4333222  23344567899999888877644 44  588888863


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe--EEEEEcCCCCceeeecC
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--FTIWDVAQGLGTPIRRG  252 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~--i~iwd~~~~~~~~~~~~  252 (444)
                      .. ..                         .+..+ ...+....|+|||+.|+..+.+++.  |.++|+.+++...+...
T Consensus       277 g~-~~-------------------------~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~  329 (429)
T PRK03629        277 GQ-IR-------------------------QVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE  329 (429)
T ss_pred             CC-EE-------------------------EccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC
Confidence            22 11                         11222 2456789999999999887765334  55557777666555555


Q ss_pred             CCCeEEEEEecCCCeEEEEecC---CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          253 FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      ........|+|||++|+..+.+   ..|.+||+.+++...+... .......|+|||+.|++++...+ ...+.+.+.  
T Consensus       330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~--  405 (429)
T PRK03629        330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM-GSVLNLVST--  405 (429)
T ss_pred             CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC-ceEEEEEEC--
Confidence            5556778999999999766543   3588899998887655432 23457899999999998765433 233333321  


Q ss_pred             CcCCCcCCCCcccccccccCC-ceeEEEECCC
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS  360 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd  360 (444)
                               ++.....+.++. .+...+|+|-
T Consensus       406 ---------~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        406 ---------DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             ---------CCCCeEECccCCCCcCCcccCCC
Confidence                     344455566655 6788888873

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.2e-15  Score=139.62  Aligned_cols=238  Identities=17%  Similarity=0.174  Sum_probs=149.1

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-C--cEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      .+.++|.+.  .....++ .+...+.+..|+|||++++.++.+ +  .|.+||+..++. ..+.                
T Consensus       199 ~l~i~d~dG--~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt----------------  258 (448)
T PRK04792        199 QLMIADYDG--YNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVT----------------  258 (448)
T ss_pred             EEEEEeCCC--CCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEec----------------
Confidence            455666653  3333343 556788999999999888877653 3  577778763321 1111                


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG  275 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~  275 (444)
                            .+.    ......+|+|||+.|+.... ++ ..|.++|+.+++...+..+.......+|+|||+.|+..+. ++
T Consensus       259 ------~~~----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g  328 (448)
T PRK04792        259 ------SFP----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG  328 (448)
T ss_pred             ------CCC----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCC
Confidence                  111    23346899999998876543 43 1488889988877666666566778999999998866553 33


Q ss_pred             --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347          276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  351 (444)
Q Consensus       276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (444)
                        .|+++|+.+++...+..........+|+|+|++|++.....+.  ++.+++..              .....+.....
T Consensus       329 ~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--------------g~~~~lt~~~~  394 (448)
T PRK04792        329 KPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--------------GAMQVLTSTRL  394 (448)
T ss_pred             CceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--------------CCeEEccCCCC
Confidence              5777788888775544333334567999999999886654443  33333211              11122222212


Q ss_pred             eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      .....|+|||++|+..+.++..   ..+++++...+..      ..+..+...+...+|||
T Consensus       395 d~~ps~spdG~~I~~~~~~~g~---~~l~~~~~~G~~~------~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        395 DESPSVAPNGTMVIYSTTYQGK---QVLAAVSIDGRFK------ARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce------EECcCCCCCcCCCccCC
Confidence            2345799999998877765321   4578888754332      23444556677889987

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.5e-16  Score=142.84  Aligned_cols=258  Identities=14%  Similarity=0.212  Sum_probs=182.5

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..|.+.|..++|.|-...+++++.||.+++|++......                 .....+.+.++++|. ++|.|+++
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-----------------~~~~~epi~tfraH~-gPVl~v~v  352 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-----------------AEKDVEPILTFRAHE-GPVLCVVV  352 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-----------------cccceeeeEEEeccc-CceEEEEe
Confidence            468889999999999889999999999999999521110                 112345677899996 99999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCC-----------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGL-----------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~-----------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                      .+++.++++|+-|| +|+.|++....           .-.+.+|.+.++.+++|+....|++++.||++++|+.......
T Consensus       353 ~~n~~~~ysgg~Dg-~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~  431 (577)
T KOG0642|consen  353 PSNGEHCYSGGIDG-TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC  431 (577)
T ss_pred             cCCceEEEeeccCc-eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc
Confidence            99999999999998 99999765321           1246788999999999999989999999999999998776663


Q ss_pred             ccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCE
Q 013347          289 PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGER  363 (444)
Q Consensus       289 ~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~  363 (444)
                      .+.  ...+...++.+-.....+.++.   ...+...+.+......  +....   -....+.   ..+..+.++|.+.+
T Consensus       432 ~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~--~~~~~---s~~~~~~~~~~~in~vVs~~~~~~  503 (577)
T KOG0642|consen  432 TFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSD--LLIFE---SSASPGPRRYPQINKVVSHPTADI  503 (577)
T ss_pred             ccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhh--eeecc---ccCCCcccccCccceEEecCCCCe
Confidence            332  2223345555543332222111   1111111111000000  00000   0011111   25788899999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      .+++..|      +.|+++|..+++++     .....|-..++++++-|+|-|     |..+..+|++.+|.+..++
T Consensus       504 ~~~~hed------~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~~ng~~-----l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  504 TFTAHED------RSIRFFDNKTGKIL-----HSMVAHKDSVTSLAIDPNGPY-----LMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             eEecccC------Cceecccccccccc-----hheeeccceecceeecCCCce-----EEeecCCceeehhhccchh
Confidence            9999888      99999999988776     556678889999999998776     8889999999999885543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.1e-14  Score=138.53  Aligned_cols=238  Identities=15%  Similarity=0.184  Sum_probs=150.6

Q ss_pred             EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCCCc
Q 013347          123 VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR  199 (444)
Q Consensus       123 v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (444)
                      |.++|.+  +.....+. .+...+...+|+|||++++.++.+   ..|.+|++..+.. ..+.                 
T Consensus       181 l~~~d~~--g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~-----------------  239 (430)
T PRK00178        181 LQRSDYD--GARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQIT-----------------  239 (430)
T ss_pred             EEEECCC--CCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEcc-----------------
Confidence            5555655  33334343 566788999999999888877654   4688888873321 1111                 


Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC-
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG-  275 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-  275 (444)
                              .. .+.+....|+|||+.|+... .++ ..|.+||+.+++...+..+........|+|||+.|+..+. ++ 
T Consensus       240 --------~~-~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~  310 (430)
T PRK00178        240 --------NF-EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK  310 (430)
T ss_pred             --------CC-CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence                    11 13445789999999887544 333 1688889998877666666666677899999998866553 33 


Q ss_pred             -cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCce
Q 013347          276 -TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  352 (444)
Q Consensus       276 -~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  352 (444)
                       .|+++|+.+++...+...........|+|+|++|++....++  .++.+++.              ....+.+......
T Consensus       311 ~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~--------------tg~~~~lt~~~~~  376 (430)
T PRK00178        311 PQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ--------------RGSVRILTDTSLD  376 (430)
T ss_pred             ceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECC--------------CCCEEEccCCCCC
Confidence             688888888876554433333456789999999988765433  23333321              1112222221122


Q ss_pred             eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      ....|+|||++|+..+.++..   ..|.++++..+...      .+..+...+...+|||-
T Consensus       377 ~~p~~spdg~~i~~~~~~~g~---~~l~~~~~~g~~~~------~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        377 ESPSVAPNGTMLIYATRQQGR---GVLMLVSINGRVRL------PLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCceECCCCCEEEEEEecCCc---eEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence            356899999999887765322   56778888654332      23344556777888873

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=4.1e-15  Score=142.78  Aligned_cols=292  Identities=14%  Similarity=0.127  Sum_probs=191.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec--CCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS--DSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~--~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      .-..+.|+|-...++++...-.|+|||.+. ++....+..  .....|+.+.+-.+  ...+++++.||.|+||+--...
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            356789999999999988788999999987 333333221  23457888888543  3457888899999999754332


Q ss_pred             -CcceeeccccccccccccCCCCceEEEEEeeccC---CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-
Q 013347          177 -NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN---GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-  251 (444)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-  251 (444)
                       ....+.+.                  +..+.++.   .+.=.-+.|.....+|++++.-. .|+|||........-.. 
T Consensus      1145 ~~~~eLVTa------------------w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1145 WKKPELVTA------------------WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-SIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred             cCCceeEEe------------------eccccccCccCCCCCeeeehhhhCCeEEecCCee-EEEEEecccceeEeeccc
Confidence             22222222                  11122211   11114567887666777766665 99999998776554222 


Q ss_pred             -CCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce----eccccCCCc--eeEEEECCCCCE-EEEEEcCCceEEEE
Q 013347          252 -GFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGF--VTGATWDPEGRM-ILLAFAGSLTLGSI  322 (444)
Q Consensus       252 -~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~--v~~~~~sp~g~~-l~~~~~~~~~~~~~  322 (444)
                       ....++++.-+- .|+.+++|..||.|++||.+....    .....|...  |..+.+.+.|-- |+ +++.++.+..|
T Consensus      1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv-Sgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV-SGSQDGDIQLL 1284 (1387)
T ss_pred             CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee-eeccCCeEEEE
Confidence             334566655432 478999999999999999987654    234467776  999999987755 55 44555677777


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI  398 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~  398 (444)
                      +++...           .....++..|.    ..+++..+++...+|+|+.       +.|+||++...++.....-..+
T Consensus      1285 DlR~~~-----------~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G~~l~~~k~n~~F 1346 (1387)
T KOG1517|consen 1285 DLRMSS-----------KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSGEQLNIIKYNPGF 1346 (1387)
T ss_pred             ecccCc-----------ccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecChhhhcccccCccc
Confidence            764320           01111111221    4899999999999999876       5899999986554322221112


Q ss_pred             e-CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          399 R-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       399 ~-~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      . .....+.+++|+|.--     +|++|..|.+|++|.-
T Consensus      1347 ~~q~~gs~scL~FHP~~~-----llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHRL-----LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             ccCcCCCcceeeecchhH-----hhhhccCCceEEEeec
Confidence            2 2345578999999643     5889999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=7.7e-15  Score=139.10  Aligned_cols=181  Identities=22%  Similarity=0.301  Sum_probs=128.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCc
Q 013347          212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~  286 (444)
                      ..+.+.+|+|||+.|++.+.++  ..|.+||+.+++...+....+...+++|+|||+.|+ +.+.++  .|++||+.+++
T Consensus       204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence            5789999999999999887543  269999999887766666566666899999999875 445555  69999999988


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ...+..+......++|+|+|+.|+++.+..+.  ++.+++.              ....+.+..+. ....++|+|||++
T Consensus       284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------------~g~~~~lt~~g~~~~~~~~SpDG~~  349 (433)
T PRK04922        284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------------GGSAERLTFQGNYNARASVSPDGKK  349 (433)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEEeecCCCCccCEEECCCCCE
Confidence            87776666666789999999999887655443  4444431              11122222222 3456899999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      |+..+.+++.   ..|.+||+.+++..      .+. +........|+|||++
T Consensus       350 Ia~~~~~~~~---~~I~v~d~~~g~~~------~Lt-~~~~~~~p~~spdG~~  392 (433)
T PRK04922        350 IAMVHGSGGQ---YRIAVMDLSTGSVR------TLT-PGSLDESPSFAPNGSM  392 (433)
T ss_pred             EEEEECCCCc---eeEEEEECCCCCeE------ECC-CCCCCCCceECCCCCE
Confidence            9887654211   47999999887653      122 2223457799999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=9e-15  Score=125.05  Aligned_cols=230  Identities=13%  Similarity=0.130  Sum_probs=163.2

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~  179 (444)
                      +..+.|+.+...|..|+.||. ++|+.+..++  ..........|-.+-|+..  .++.++.+  ..+++.++...... 
T Consensus         8 i~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I-   81 (391)
T KOG2110|consen    8 INFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI-   81 (391)
T ss_pred             eeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE-
Confidence            666779999999999999987 8888876333  1111122334555667654  44445544  45888887733222 


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee----cCCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----RGFGG  255 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~----~~~~~  255 (444)
                                              ..+.-  ...|.++.++.  ++|+++=.+  .|+|||+++.+.....    .+...
T Consensus        82 ------------------------Ce~~f--pt~IL~VrmNr--~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~g  131 (391)
T KOG2110|consen   82 ------------------------CEIFF--PTSILAVRMNR--KRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKG  131 (391)
T ss_pred             ------------------------EEEec--CCceEEEEEcc--ceEEEEEcc--cEEEEecccceeehhhhccCCCccc
Confidence                                    22222  25789999865  456655554  6999999998766532    23455


Q ss_pred             eEEEEEecCCCeEEEE--ecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          256 LSILKWSPTGDYFFAA--KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~--~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      +.++.+++.+.+++.-  ...|.|.+||..+-+. ..+..|.+.+.+++|+++|.+||+++..+..++++.+.       
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~-------  204 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP-------  204 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC-------
Confidence            6667677677788743  2368999999988776 45679999999999999999999998877666776653       


Q ss_pred             CCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          333 AHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                            +++.+..|+-..   .|.+++|+||+++|++.+..      ++|.||.++.
T Consensus       205 ------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T------eTVHiFKL~~  249 (391)
T KOG2110|consen  205 ------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT------ETVHIFKLEK  249 (391)
T ss_pred             ------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC------CeEEEEEecc
Confidence                  345555555433   79999999999999998887      9999999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.3e-14  Score=137.09  Aligned_cols=183  Identities=20%  Similarity=0.251  Sum_probs=125.6

Q ss_pred             CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCCcEEEE--ECCCCc
Q 013347          212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLW--ETNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iw--d~~~~~  286 (444)
                      ..+.+.+|+|||+.|+..+.++  ..|.+||+.+++...+....+.+...+|+|||+.|+ +.+.++...||  |+.++.
T Consensus       196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~  275 (427)
T PRK02889        196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG  275 (427)
T ss_pred             CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            6788999999999999887543  269999999887776665666777899999999886 45667765555  566666


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA  365 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~  365 (444)
                      ...+..+......+.|+|||+.|++.++..+....+.+..            .......+.... .....+|||||++|+
T Consensus       276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia  343 (427)
T PRK02889        276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------------SGGAAQRVTFTGSYNTSPRISPDGKLLA  343 (427)
T ss_pred             cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------------CCCceEEEecCCCCcCceEECCCCCEEE
Confidence            6666666666678899999999987765444433443321            111111121111 344678999999999


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ..+.++..   ..|.+||+.+++...      +.. ......++|+|||++
T Consensus       344 ~~s~~~g~---~~I~v~d~~~g~~~~------lt~-~~~~~~p~~spdg~~  384 (427)
T PRK02889        344 YISRVGGA---FKLYVQDLATGQVTA------LTD-TTRDESPSFAPNGRY  384 (427)
T ss_pred             EEEccCCc---EEEEEEECCCCCeEE------ccC-CCCccCceECCCCCE
Confidence            87765321   379999998876531      221 223467899999997

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4.1e-16  Score=135.45  Aligned_cols=194  Identities=17%  Similarity=0.269  Sum_probs=140.0

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      .+++|+++|..|++++.||.+|||++.... ... ....|...|.++.|+|||+.|++.+.| ..+||++++........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l-~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TIL-EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch-hhh-hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            689999999999999999999999987632 222 225788999999999998888888989 99999999553332221


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC---C-eEEEEeeCCCeEEEEEcCCCCc------eeeecC
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG---R-YLASASYESSSFTIWDVAQGLG------TPIRRG  252 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~-~l~~~~~d~~~i~iwd~~~~~~------~~~~~~  252 (444)
                      ..                        ..+.....+.|+.|+   . ++++.-..++.|..||+.....      ......
T Consensus       225 ~~------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~  280 (398)
T KOG0771|consen  225 PF------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR  280 (398)
T ss_pred             Cc------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence            10                        012455667777665   2 2333333444777776653322      112223


Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      ...|.+++.+++|++++.|+.||.|-|++..+-+...  -..|...|+.+.|+|+.++++.. +.+.....+.+
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l  353 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKL  353 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc-ccCCceeEEEE
Confidence            4689999999999999999999999999998877633  34799999999999999998863 33344444444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=2.6e-14  Score=135.78  Aligned_cols=218  Identities=18%  Similarity=0.291  Sum_probs=143.6

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      .|.++|..  +.....+. .+...+.+.+|+|||++++.+..+   ..|++|++..+...                    
T Consensus       171 ~l~~~d~~--g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--------------------  227 (417)
T TIGR02800       171 ELQVADYD--GANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--------------------  227 (417)
T ss_pred             eEEEEcCC--CCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--------------------
Confidence            46666665  33334443 566678999999999888877654   47899998733211                    


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC-C
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G  275 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~  275 (444)
                            .+..+ ...+.+++|+|||+.|+... .++ ..|++||+.++....+..+........|+|||+.|+..+.. +
T Consensus       228 ------~~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g  300 (417)
T TIGR02800       228 ------KVASF-PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG  300 (417)
T ss_pred             ------EeecC-CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence                  11112 24556789999999887543 332 26899999888766666555555678999999988766543 3


Q ss_pred             --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCc
Q 013347          276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  351 (444)
Q Consensus       276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (444)
                        .|+++|+.+++...+..+......+.|+|+|++++++....+  .++.+++..              .....+.....
T Consensus       301 ~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~~  366 (417)
T TIGR02800       301 SPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--------------GGERVLTDTGL  366 (417)
T ss_pred             CceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------------CCeEEccCCCC
Confidence              688889888877666656667788999999999988765432  344444321              11122222223


Q ss_pred             eeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .....|+|||++|+..+.++..   ..+++.+...
T Consensus       367 ~~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g  398 (417)
T TIGR02800       367 DESPSFAPNGRMILYATTRGGR---GVLGLVSTDG  398 (417)
T ss_pred             CCCceECCCCCEEEEEEeCCCc---EEEEEEECCC
Confidence            3456899999999888876432   4566666554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=2.5e-13  Score=124.69  Aligned_cols=261  Identities=14%  Similarity=0.215  Sum_probs=171.6

Q ss_pred             ceEEEEEecCCCeEEEEEC----CCeEEEEEccCC-CCceeEEecC-CCCCeEEEEEeeCCCeEEEEec-CCcEEEEecC
Q 013347          101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDS-GKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~----dg~v~iw~~~~~-~~~~~~~~~~-~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~  173 (444)
                      ....++++|++++|.++..    ++.|..|.+... +....+.... .......++++|+++.++++.. +|.|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4567899999999998875    579999999875 3333322212 3445667999999888877765 6999999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEE-e--eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC--cee
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDF-L--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTP  248 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~--~~~  248 (444)
                      ..+.+.......               ..... .  .........++.++|+|+++++.......|.+|++....  ...
T Consensus       118 ~~g~l~~~~~~~---------------~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~  182 (345)
T PF10282_consen  118 DDGSLGEVVQTV---------------RHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP  182 (345)
T ss_dssp             TTSEEEEEEEEE---------------ESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred             CCcccceeeeec---------------ccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence            654433321100               00000 0  011235689999999999998876544589999998765  222


Q ss_pred             ----eecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECC--CCceec------cc---cCCCceeEEEECCCCCEEEEE
Q 013347          249 ----IRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETN--TWTSEP------WS---STSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       249 ----~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~--~~~~~~------~~---~~~~~v~~~~~sp~g~~l~~~  312 (444)
                          ........+.++|+|+++++++. -.+++|.++++.  +++...      +.   ........++++|+|++|+++
T Consensus       183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs  262 (345)
T PF10282_consen  183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS  262 (345)
T ss_dssp             EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred             eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence                12335678999999999988554 457889999988  443321      11   112257889999999999999


Q ss_pred             EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc--CCCCe
Q 013347          313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPL  389 (444)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~~  389 (444)
                      ......+..+++.....         ....+..+.... ..+.++++|+|++|+++..++     +.|.+|++  ++|.+
T Consensus       263 nr~~~sI~vf~~d~~~g---------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  263 NRGSNSISVFDLDPATG---------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKL  328 (345)
T ss_dssp             ECTTTEEEEEEECTTTT---------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEE
T ss_pred             eccCCEEEEEEEecCCC---------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcE
Confidence            88888888888732210         122233333222 578999999999999998775     78999977  45555


Q ss_pred             E
Q 013347          390 I  390 (444)
Q Consensus       390 ~  390 (444)
                      .
T Consensus       329 ~  329 (345)
T PF10282_consen  329 T  329 (345)
T ss_dssp             E
T ss_pred             E
Confidence            4

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.69  E-value=1.2e-16  Score=149.37  Aligned_cols=254  Identities=16%  Similarity=0.139  Sum_probs=176.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|+|+.|...|.++++|+.|..++||..++ ....... .+|.+.|+.++.+.+.-.+++++.|..|++|.+....    
T Consensus       192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~-rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~----  265 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASC-RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA----  265 (1113)
T ss_pred             heeeeeeccccceEeecCccceeeeeeccc-hhhhccC-CCCccccchhccchhhhhhhhcccCceEEEEecCCCc----
Confidence            599999999999999999999999999886 4444333 6999999999999986666777789999999998332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecCCCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGFGG  255 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~~~~  255 (444)
                                           .+..+++|. +.|++++|+|-.    +.+.|| ++++||.+-.....     ....+.-
T Consensus       266 ---------------------pvsvLrght-gavtaiafsP~~----sss~dg-t~~~wd~r~~~~~y~prp~~~~~~~~  318 (1113)
T KOG0644|consen  266 ---------------------PVSVLRGHT-GAVTAIAFSPRA----SSSDDG-TCRIWDARLEPRIYVPRPLKFTEKDL  318 (1113)
T ss_pred             ---------------------hHHHHhccc-cceeeeccCccc----cCCCCC-ceEeccccccccccCCCCCCcccccc
Confidence                                 334577886 899999999964    667787 99999987211111     1122355


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      +.++.|..++.-+++++.|+.-..|....-.     .+...+.-+.++.+-..+......+..+..|++.          
T Consensus       319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~----------  383 (1113)
T KOG0644|consen  319 VDSILFENNGDRFLTGSRDGEARNHEFEQLA-----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY----------  383 (1113)
T ss_pred             eeeeeccccccccccccCCcccccchhhHhh-----hhccceEEEeccccccccceeeeeeeEeeeeecc----------
Confidence            6777888888889999999987777654321     1222222222222222233333333444555543          


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEE-EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                         ++.....+.+|. .+..+.++|-...++ +++.|      |...|||+-.+..++.    ...+|.. +..-+||+|
T Consensus       384 ---~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~d------gst~iwdi~eg~pik~----y~~gh~k-l~d~kFSqd  449 (1113)
T KOG0644|consen  384 ---TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYD------GSTIIWDIWEGIPIKH----YFIGHGK-LVDGKFSQD  449 (1113)
T ss_pred             ---cchhhhhhcccccceeeeeecCCCcHhhhhccCC------CceEeeecccCCccee----eecccce-eeccccCCC
Confidence               456677778888 899999999776554 55555      9999999987655422    2235544 456799999


Q ss_pred             CCC
Q 013347          414 DKF  416 (444)
Q Consensus       414 g~~  416 (444)
                      |.-
T Consensus       450 gts  452 (1113)
T KOG0644|consen  450 GTS  452 (1113)
T ss_pred             Cce
Confidence            875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.69  E-value=4.5e-15  Score=123.54  Aligned_cols=155  Identities=16%  Similarity=0.335  Sum_probs=112.5

Q ss_pred             EEEEEecCCCeEEEEEC----------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec--CCcEEEE
Q 013347          103 QGVSWHQHKHIVAFISG----------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIW  170 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw  170 (444)
                      ..+.|+|+|++|++-..          -+...||.++..+.....+.....++|.+++|+|+|..++++.+  ++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35889999998876432          23467777755444445544455667999999999988876643  4799999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCcee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTP  248 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~  248 (444)
                      |++ ..                         .+..+.   ...+..+.|+|+|++|++++.++  |.|.+||+++.+.+.
T Consensus        89 d~~-~~-------------------------~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~  139 (194)
T PF08662_consen   89 DVK-GK-------------------------KIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS  139 (194)
T ss_pred             cCc-cc-------------------------EeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence            996 11                         122222   25678999999999999987542  279999999776665


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEec------CCcEEEEECCCCce
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTS  287 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~  287 (444)
                      ...+. .+..++|+|||++|+++..      |+.++||+......
T Consensus       140 ~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  140 TFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             ccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            55544 5789999999999988764      77899999875443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=7.5e-15  Score=124.18  Aligned_cols=242  Identities=17%  Similarity=0.229  Sum_probs=163.1

Q ss_pred             eEEEEEec--CCCeEEEEECCCeEEEEEccCCCCceeEEecCCC-CCeEEEEEeeCCCeEEEEec-----CCcEEEEecC
Q 013347          102 LQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS  173 (444)
Q Consensus       102 v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~  173 (444)
                      +..++|..  ....+.+++.||+|++||+....+...+....+. .+..+++..-+ ..+++++.     +-.|.+||++
T Consensus        73 ~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR  151 (376)
T KOG1188|consen   73 TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK-KNIIACGTELTRSDASVVLWDVR  151 (376)
T ss_pred             ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc-CCeEEeccccccCceEEEEEEec
Confidence            66777776  4567888999999999999987666666555555 45666666555 45666664     4789999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEE-eeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc----e
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG----T  247 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~----~  247 (444)
                      ..+.+                        ++. ...|+ ..|+++.|+| +.+.|++|+.|| -|.+||++....    .
T Consensus       152 ~~qq~------------------------l~~~~eSH~-DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  152 SEQQL------------------------LRQLNESHN-DDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALL  205 (376)
T ss_pred             cccch------------------------hhhhhhhcc-CcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHH
Confidence            44332                        112 34454 8999999999 667899999998 999999986532    2


Q ss_pred             eeecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceeccccCC--------------CceeEEEECCC-CCEEEE
Q 013347          248 PIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSSTS--------------GFVTGATWDPE-GRMILL  311 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------~~v~~~~~sp~-g~~l~~  311 (444)
                      ....+...|..+.|..++ +.|.+-+...+..+|+++.+.........              .-|.+  .+|. +...+.
T Consensus       206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~--~~~~~~~~~~l  283 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE--HSPGDKDTCAL  283 (376)
T ss_pred             HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec--ccCCCcceEEE
Confidence            344566789999999876 34777778889999999887753222111              11111  2343 334444


Q ss_pred             EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ++...+....+.+-+..+      . .....+..+.++.  -|+++.|...+.++.+|+.|      |.+.+|..+
T Consensus       284 ~g~~~n~~~~~~~~~~~s------~-~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED------G~l~~Wk~~  346 (376)
T KOG1188|consen  284 AGTDSNKGTIFPLVDTSS------G-SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED------GLLQAWKVE  346 (376)
T ss_pred             eccccCceeEEEeeeccc------c-cccCccccccCCcHHHHHHHhhhcccceeeccCCC------ceEEEEecC
Confidence            444344455555432110      0 0233344556544  78899999899999999999      999999954

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=4.4e-14  Score=129.36  Aligned_cols=280  Identities=18%  Similarity=0.207  Sum_probs=167.5

Q ss_pred             EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccccccc
Q 013347          115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR  194 (444)
Q Consensus       115 a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  194 (444)
                      ++-..++.|.|.|..+ .+....+..+ ...-..+.|+|||+++++++.||.|.++|+.+.+....+..+          
T Consensus        10 V~~~~~~~v~viD~~t-~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----------   77 (369)
T PF02239_consen   10 VVERGSGSVAVIDGAT-NKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----------   77 (369)
T ss_dssp             EEEGGGTEEEEEETTT--SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----------
T ss_pred             EEecCCCEEEEEECCC-CeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----------
Confidence            4455789999999987 4545554323 223345789999999999999999999999966655555444          


Q ss_pred             CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec--------CCCCeEEEEEecCCC
Q 013347          195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--------GFGGLSILKWSPTGD  266 (444)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--------~~~~v~~~~~sp~~~  266 (444)
                                       ....++++++||++++++....+.+.++|.++.+......        ....+..+..+|...
T Consensus        78 -----------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   78 -----------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             -----------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             -----------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence                             5678999999999999887654599999999887665332        124677888888888


Q ss_pred             eEEEE-ecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC-----------C--
Q 013347          267 YFFAA-KFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-----------S--  330 (444)
Q Consensus       267 ~l~~~-~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~-----------~--  330 (444)
                      .++.. -+.+.|.+.|....+..  .............|+|++++++++...+..+..++......           .  
T Consensus       141 ~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~  220 (369)
T PF02239_consen  141 EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGP  220 (369)
T ss_dssp             EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred             EEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccc
Confidence            66555 44588888897765432  23345566788999999999887765555555554322100           0  


Q ss_pred             --------c------C--------------CCcC-CCCcccccccccCCceeEEEECCCCCEEEEE---ecCCCccccce
Q 013347          331 --------L------D--------------AHLL-PVDLPDIVSLTGSQGIEKIAWDASGERLAVS---YKGGDDIYKGL  378 (444)
Q Consensus       331 --------~------~--------------~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~~d~~~~~d~~  378 (444)
                              .      .              ...+ ....+.++++.....-..+..+|+++++.+.   +.+     .++
T Consensus       221 ~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~-----~~~  295 (369)
T PF02239_consen  221 GANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD-----ADT  295 (369)
T ss_dssp             EEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS-----HT-
T ss_pred             cccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC-----Cce
Confidence                    0      0              0000 1122334444444422667889999999998   333     289


Q ss_pred             EEEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          379 IAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       379 i~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      |.|+|.++.+..     ..+. +....+..+.|++||++.   ++++...+|.|.+|+-
T Consensus       296 v~viD~~tl~~~-----~~i~~~~~~~~~h~ef~~dG~~v---~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  296 VQVIDKKTLKVV-----KTITPGPGKRVVHMEFNPDGKEV---WVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EEEEECCGTEEE-----E-HHHHHT--EEEEEE-TTSSEE---EEEEE--TTEEEEEET
T ss_pred             EEEEECcCccee-----EEEeccCCCcEeccEECCCCCEE---EEEEecCCCEEEEEEC
Confidence            999999986543     2332 223347899999999973   4554444558888864

...

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.67  E-value=4.2e-13  Score=127.53  Aligned_cols=277  Identities=19%  Similarity=0.341  Sum_probs=190.8

Q ss_pred             ceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~  178 (444)
                      .|.+++|+|+++.++.++. ++.+++|+... ......+ .+|...|.+++|+|++..++++ +.|+.|++||.....  
T Consensus       157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~--  232 (466)
T COG2319         157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--  232 (466)
T ss_pred             cEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--
Confidence            5889999999998888875 99999999986 3444444 4699999999999997645555 778999999766111  


Q ss_pred             ceeeccccccccccccCCCCceEEEE-EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-ee-eecCCCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP-IRRGFGG  255 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~~-~~~~~~~  255 (444)
                                             ... .+.+|. ... ...|+|++..+++++.++ .+++|++..... .. ...|...
T Consensus       233 -----------------------~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~  286 (466)
T COG2319         233 -----------------------LLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDG-TIRLWDLRSSSSLLRTLSGHSSS  286 (466)
T ss_pred             -----------------------EEeeecCCCC-cce-eEeECCCCCEEEEecCCC-cEEEeeecCCCcEEEEEecCCcc
Confidence                                   222 355564 333 228999998888899998 999999987764 33 3356789


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceec-c--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-W--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      +.++.|+|++..+++++.|+.+.+||..+..... .  ..|...+..+.|.+++..++.+...+..+..|.+..      
T Consensus       287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------  360 (466)
T COG2319         287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT------  360 (466)
T ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC------
Confidence            9999999988888888888889999998877632 2  267777999999433356665544444444444321      


Q ss_pred             CCcCCCCcccccccccCCceeEEEECCCCCEEEE-EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          333 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                             ............+..+.+++ ...+.. +..+      +.+.+|+........     ....+...+....++
T Consensus       361 -------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  421 (466)
T COG2319         361 -------GKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTD------GTVRLWDLSTGSLLR-----NLDGHTSRVTSLDFS  421 (466)
T ss_pred             -------CceeEEecCCceEEEEEECC-CCCEEEEecCC------CceEEEecccCeeee-----eccCCCCcEEEEEEC
Confidence                   11111111221378899988 533433 4555      899999999765541     122221567777888


Q ss_pred             eCCCCCCCceEEEEeccceeeeeeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +++.+     +..+.+++.+..|...
T Consensus       422 ~~~~~-----~~~~~~~~~~~~~~~~  442 (466)
T COG2319         422 PDGKS-----LASGSSDNTIRLWDLK  442 (466)
T ss_pred             CCCcE-----EEEecCCCcEEEEecc
Confidence            87765     4446677777777654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.67  E-value=1.1e-13  Score=116.62  Aligned_cols=287  Identities=15%  Similarity=0.278  Sum_probs=175.8

Q ss_pred             ceEEEEEecCCCeEEEE-ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      .|.-+.|..|..+++.+ ..++.|.+|++... .-.+.+ .....++.+++|||||+.++..+. +-.|.+|++.+.+..
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp-ew~ckI-deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQP-EWYCKI-DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecc-eeEEEe-ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            47778999998877654 58889999999863 333444 355678999999999988877765 789999999854432


Q ss_pred             ceeeccccccccccccCCCCc---------------------eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEE
Q 013347          179 ASVRSGAASFLGALSRGPGTR---------------------WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFT  237 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~  237 (444)
                      ......  .....+++.++++                     |.+.+.+.... -..+.+.|+|||+.|++-        
T Consensus       128 ~~~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT-~DltgieWsPdg~~laVw--------  196 (447)
T KOG4497|consen  128 LLPHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT-IDLTGIEWSPDGNWLAVW--------  196 (447)
T ss_pred             Eecccc--cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc-ccccCceECCCCcEEEEe--------
Confidence            111100  0111122222222                     32333333332 456677788887766543        


Q ss_pred             EEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-----------------------------
Q 013347          238 IWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----------------------------  288 (444)
Q Consensus       238 iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-----------------------------  288 (444)
                        |---.-.+....-.-.+..++|+|.+++|+.|+.|+.+|+.+--+.+..                             
T Consensus       197 --d~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~  274 (447)
T KOG4497|consen  197 --DNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH  274 (447)
T ss_pred             --cchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence              3211111111222346788999999999999999999887653221100                             


Q ss_pred             --------------------------------ccc------cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCC
Q 013347          289 --------------------------------PWS------STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPP  329 (444)
Q Consensus       289 --------------------------------~~~------~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~  329 (444)
                                                      .+.      ...-.+.-++|++|..++++-.+. -..++.|++.+.  
T Consensus       275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--  352 (447)
T KOG4497|consen  275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--  352 (447)
T ss_pred             cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh--
Confidence                                            000      011235678999999988865432 134556665321  


Q ss_pred             CcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  409 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~  409 (444)
                                 +.-..+....+|....|+|....|+.+...      ..+++|.......+      ...+.+-.|..+.
T Consensus       353 -----------~l~avLiQk~piraf~WdP~~prL~vctg~------srLY~W~psg~~~V------~vP~~GF~i~~l~  409 (447)
T KOG4497|consen  353 -----------KLHAVLIQKHPIRAFEWDPGRPRLVVCTGK------SRLYFWAPSGPRVV------GVPKKGFNIQKLQ  409 (447)
T ss_pred             -----------hhhhhhhhccceeEEEeCCCCceEEEEcCC------ceEEEEcCCCceEE------ecCCCCceeeeEE
Confidence                       111122222389999999999888887766      78999998753322      2334456688999


Q ss_pred             eeeCCCCCCCceEEEEeccceee
Q 013347          410 FSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       410 ~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      |.-+|.+     ++++-+|....
T Consensus       410 W~~~g~~-----i~l~~kDafc~  427 (447)
T KOG4497|consen  410 WLQPGEF-----IVLCGKDAFCV  427 (447)
T ss_pred             ecCCCcE-----EEEEcCCceEE
Confidence            9888775     66665555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2e-15  Score=135.23  Aligned_cols=178  Identities=16%  Similarity=0.165  Sum_probs=131.6

Q ss_pred             cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE  150 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~  150 (444)
                      -.+...|+||++-                  |+|++|+.+|.+|++|+.|-.+.|||.-. .+....+..+|...|.++.
T Consensus        40 L~lE~eL~GH~GC------------------VN~LeWn~dG~lL~SGSDD~r~ivWd~~~-~KllhsI~TgHtaNIFsvK  100 (758)
T KOG1310|consen   40 LDLEAELTGHTGC------------------VNCLEWNADGELLASGSDDTRLIVWDPFE-YKLLHSISTGHTANIFSVK  100 (758)
T ss_pred             cchhhhhccccce------------------ecceeecCCCCEEeecCCcceEEeecchh-cceeeeeecccccceeEEe
Confidence            3445668888766                  99999999999999999999999999986 5666666679999999999


Q ss_pred             EeeCC--CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEE
Q 013347          151 WRPNG--GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLA  227 (444)
Q Consensus       151 ~s~~~--~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~  227 (444)
                      |-|..  +.+++++.|..|+++|++..+.-.. .              .+.......+..|. ..|..++-.|++ ..+.
T Consensus       101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-d--------------~~~~~~~~~~~cht-~rVKria~~p~~Phtfw  164 (758)
T KOG1310|consen  101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-D--------------HGMEETTRCWSCHT-DRVKRIATAPNGPHTFW  164 (758)
T ss_pred             eeccCCCeEEEeccCcceEEEEeccccccccc-c--------------cCccchhhhhhhhh-hhhhheecCCCCCceEE
Confidence            98843  4567777899999999983221100 0              00111233445564 788899999988 7889


Q ss_pred             EEeeCCCeEEEEEcCCCCc-eee----------ecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCC
Q 013347          228 SASYESSSFTIWDVAQGLG-TPI----------RRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNT  284 (444)
Q Consensus       228 ~~~~d~~~i~iwd~~~~~~-~~~----------~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~  284 (444)
                      +++.|| +|+-+|++.... .+-          ...--...++..+|. ..+|++|+.|--.++||.+.
T Consensus       165 sasEDG-tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  165 SASEDG-TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             EecCCc-ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            999998 999999987421 110          011134678999995 55779999999999999653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=2.1e-14  Score=118.95  Aligned_cols=246  Identities=15%  Similarity=0.223  Sum_probs=173.9

Q ss_pred             CCCCeEEEEEe--eCCCeEEEEec-----CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEE-eeccCCCc
Q 013347          142 SQRDVKVLEWR--PNGGRSLSVGC-----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQ  213 (444)
Q Consensus       142 ~~~~v~~l~~s--~~~~~ll~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  213 (444)
                      ..-+++++.|+  |+.+..++.|+     .+.|.|..++....                       ..+.. -..| .-+
T Consensus        43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-----------------------e~~~~a~fd~-~YP   98 (364)
T KOG0290|consen   43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-----------------------ELVEDANFDH-PYP   98 (364)
T ss_pred             CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-----------------------ceeccCCCCC-CCC
Confidence            34567888898  34344444443     27788777762211                       11111 1223 368


Q ss_pred             eEEEEEccCCC-----eEEEEeeCCCeEEEEEcCCCCcee----------eecCCCCeEEEEEec-CCCeEEEEecCCcE
Q 013347          214 ITALSWGPDGR-----YLASASYESSSFTIWDVAQGLGTP----------IRRGFGGLSILKWSP-TGDYFFAAKFDGTF  277 (444)
Q Consensus       214 v~~~~~sp~~~-----~l~~~~~d~~~i~iwd~~~~~~~~----------~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v  277 (444)
                      ++.+.|.|+..     +||+++ |  .+++|.+...+...          ...+..+++++.|+. +-+++.+.+-|-+.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~-D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC  175 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS-D--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC  175 (364)
T ss_pred             ccceEecCCccccCcchhhccc-C--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence            99999999764     455443 4  89999987432111          122457899999987 67788999999999


Q ss_pred             EEEECCCCce----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CCce
Q 013347          278 YLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGI  352 (444)
Q Consensus       278 ~iwd~~~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v  352 (444)
                      .|||++++..    .++..|...|..++|...+..++++.+.++.++.+++++..-          ...+-.-.. +.+.
T Consensus       176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----------STIIYE~p~~~~pL  245 (364)
T KOG0290|consen  176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----------STIIYEDPSPSTPL  245 (364)
T ss_pred             EEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc----------ceEEecCCCCCCcc
Confidence            9999998733    457799999999999999888888888889999999875421          011111111 3378


Q ss_pred             eEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347          353 EKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  431 (444)
Q Consensus       353 ~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i  431 (444)
                      ..++|++.. +++|+-..|+     ..|.|.|++.    ...++..+++|...|..++|.|..+.    .++-|=+|-.+
T Consensus       246 lRLswnkqDpnymATf~~dS-----~~V~iLDiR~----P~tpva~L~~H~a~VNgIaWaPhS~~----hictaGDD~qa  312 (364)
T KOG0290|consen  246 LRLSWNKQDPNYMATFAMDS-----NKVVILDIRV----PCTPVARLRNHQASVNGIAWAPHSSS----HICTAGDDCQA  312 (364)
T ss_pred             eeeccCcCCchHHhhhhcCC-----ceEEEEEecC----CCcceehhhcCcccccceEecCCCCc----eeeecCCcceE
Confidence            899999855 7888888876     7899999987    34557889999999999999998654    46666678888


Q ss_pred             eeeeee
Q 013347          432 CTYPLI  437 (444)
Q Consensus       432 ~~~~~~  437 (444)
                      .+|++.
T Consensus       313 liWDl~  318 (364)
T KOG0290|consen  313 LIWDLQ  318 (364)
T ss_pred             EEEecc
Confidence            888875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.8e-13  Score=128.61  Aligned_cols=239  Identities=15%  Similarity=0.170  Sum_probs=141.0

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe--EEEEec-CC--cEEEEecCCCCCcceeeccccccccccccCC
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGC-KG--GICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (444)
                      .|.+.|.+  +.....++ .....+.+-+|+|||+.  ++..+. ++  .|.+.++..+. ...+.              
T Consensus       166 ~l~~~d~d--G~~~~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~lt--------------  227 (428)
T PRK01029        166 ELWSVDYD--GQNLRPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA-GKKIL--------------  227 (428)
T ss_pred             eEEEEcCC--CCCceEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC-ceEee--------------
Confidence            44444444  44444444 34456678899999876  333443 33  46666665322 11111              


Q ss_pred             CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----eEEEEEcCCC---CceeeecCC-CCeEEEEEecCCCeE
Q 013347          197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----SFTIWDVAQG---LGTPIRRGF-GGLSILKWSPTGDYF  268 (444)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~---~~~~~~~~~-~~v~~~~~sp~~~~l  268 (444)
                              .+.    +.....+|+|||+.|+..+...+    .+.+|++..+   ....+.... ......+|+|||+.|
T Consensus       228 --------~~~----g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~L  295 (428)
T PRK01029        228 --------ALQ----GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRL  295 (428)
T ss_pred             --------cCC----CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEE
Confidence                    122    34456899999999987664211    3444777653   333444332 344678999999988


Q ss_pred             EEEe-cCCcEEEE--ECCC--CceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcc
Q 013347          269 FAAK-FDGTFYLW--ETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       269 ~~~~-~d~~v~iw--d~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +..+ .+|...+|  ++..  +....+..+...+....|+|+|+.|++....++  .++.+++              ...
T Consensus       296 af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl--------------~~g  361 (428)
T PRK01029        296 VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL--------------ATG  361 (428)
T ss_pred             EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC--------------CCC
Confidence            7655 45644444  5542  333445445556788999999999987755433  3444443              122


Q ss_pred             cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          342 DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       342 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      ..+.+.... .+....|+|||++|+..+.+...   ..|++||+.+++...      +......+...+|||-
T Consensus       362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~------Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRK------IVIGSGEKRFPSWGAF  425 (428)
T ss_pred             CeEEccCCCCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEE------eecCCCcccCceecCC
Confidence            223333322 56778999999998866544222   689999998876542      2222344667888874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=1.2e-13  Score=118.28  Aligned_cols=239  Identities=13%  Similarity=0.164  Sum_probs=165.7

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ...+..+.|+.+ ..+++.|.....++|+.+..+.......                          .+..|..+-|+. 
T Consensus         5 ~~ti~~~~~Nqd-~~~lsvGs~~Gyk~~~~~~~~k~~~~~~--------------------------~~~~IvEmLFSS-   56 (391)
T KOG2110|consen    5 KPTINFIGFNQD-STLLSVGSKDGYKIFSCSPFEKCFSKDT--------------------------EGVSIVEMLFSS-   56 (391)
T ss_pred             Ccceeeeeeccc-eeEEEccCCCceeEEecCchHHhhcccC--------------------------CCeEEEEeeccc-
Confidence            345666778888 6777777777778888773222111000                          123555666654 


Q ss_pred             CCeEEEEee-CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-c---cccCCCce
Q 013347          223 GRYLASASY-ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P---WSSTSGFV  297 (444)
Q Consensus       223 ~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~---~~~~~~~v  297 (444)
                       .++|..+. +++.+++++++....+--......|.++.++.  +.|+++=.+ .|+|||+++.+.. +   ...+...+
T Consensus        57 -SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl  132 (391)
T KOG2110|consen   57 -SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL  132 (391)
T ss_pred             -ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence             35554443 33479999998887766666678899999874  345554443 4999999998873 2   33556667


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      .++++++.+.+++.-++  ...+.+.+++..          +.+.+..+..|. .+.+++|+++|.+||++|+.+     
T Consensus       133 ~AlS~n~~n~ylAyp~s--~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG-----  195 (391)
T KOG2110|consen  133 CALSPNNANCYLAYPGS--TTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG-----  195 (391)
T ss_pred             EeeccCCCCceEEecCC--CCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc-----
Confidence            77777777778887433  224555554421          456677888898 999999999999999999884     


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          377 GLIAIYDARRTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      -.||||.+.+|+.+.    ..-+|. ...|++++|+||++|     |++..+.++|.+|.|-..
T Consensus       196 TVIRVf~v~~G~kl~----eFRRG~~~~~IySL~Fs~ds~~-----L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKLY----EFRRGTYPVSIYSLSFSPDSQF-----LAASSNTETVHIFKLEKV  250 (391)
T ss_pred             eEEEEEEcCCccEee----eeeCCceeeEEEEEEECCCCCe-----EEEecCCCeEEEEEeccc
Confidence            468999999988762    222232 345899999999987     889999999999998643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.65  E-value=9.7e-15  Score=130.54  Aligned_cols=203  Identities=19%  Similarity=0.337  Sum_probs=135.5

Q ss_pred             CccCccccceEEEEE-----ecCCCeEEEEECCCeEEEEEccCCCCceeEE-e--cCCCCCeEEEEEeeCCCeEEE-Eec
Q 013347           93 HVHLLPEVDLQGVSW-----HQHKHIVAFISGSTQVIVRDYEDSGKDACIL-T--SDSQRDVKVLEWRPNGGRSLS-VGC  163 (444)
Q Consensus        93 ~~~~~~~~~v~~~~~-----sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-~--~~~~~~v~~l~~s~~~~~ll~-~~~  163 (444)
                      +...+.....+|-+|     .|.+--+..|-..|.|.+.+.... ...+.+ .  .-....|+++.|-|.+..++. +-.
T Consensus       162 ~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~  240 (636)
T KOG2394|consen  162 DKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHA  240 (636)
T ss_pred             hhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEe
Confidence            333334334555555     345666777778888888887642 111111 0  123478999999997665554 455


Q ss_pred             CCcEEEEecCCCCCcce-----eeccc-cccccc---cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC
Q 013347          164 KGGICIWAPSYPGNAAS-----VRSGA-ASFLGA---LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS  234 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~-----~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  234 (444)
                      +|.+++||.........     +..+. +.....   ....+-.+|..      . ...|...+|+|||++||+.+.|| 
T Consensus       241 sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~------~-~g~in~f~FS~DG~~LA~VSqDG-  312 (636)
T KOG2394|consen  241 SGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI------G-EGSINEFAFSPDGKYLATVSQDG-  312 (636)
T ss_pred             cCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe------c-cccccceeEcCCCceEEEEecCc-
Confidence            79999998752211110     11110 000000   01111112221      1 25889999999999999999998 


Q ss_pred             eEEEEEcCCCCceee-ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECC
Q 013347          235 SFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP  304 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp  304 (444)
                      .++|||..+.+..-+ ..--+...|++|||||++|++|++|.-|.||.+...+.. .=.+|.++|..++|.|
T Consensus       313 fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  313 FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999998766543 334578999999999999999999999999999988874 4569999999999997

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3e-14  Score=121.48  Aligned_cols=235  Identities=17%  Similarity=0.331  Sum_probs=157.1

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-  221 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-  221 (444)
                      +..+..++|++.-..+++++.|..|++|+-.. ..+..+                         +......|+|++|-| 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------------------------ks~sQrnvtclawRPl  151 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------------------------KSVSQRNVTCLAWRPL  151 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------------------------cchhhcceeEEEeccC
Confidence            44678899999766677888899999999874 222222                         222247899999999 


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCC------------ceeeec--CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCc
Q 013347          222 DGRYLASASYESSSFTIWDVAQGL------------GTPIRR--GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWT  286 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~------------~~~~~~--~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~  286 (444)
                      .+..|+.|...|  |++|......            ...+..  .+..|+++.|.+||..+++++. |..|.|||..++.
T Consensus       152 saselavgCr~g--IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~  229 (445)
T KOG2139|consen  152 SASELAVGCRAG--ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ  229 (445)
T ss_pred             Ccceeeeeecce--eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence            456777777765  9999865321            111222  2367999999999999988875 6689999999998


Q ss_pred             eeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEE
Q 013347          287 SEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA  365 (444)
Q Consensus       287 ~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  365 (444)
                      ...+. ...+.+.-+.|||||.+++++    .-+..+++|+..+..         ...+-..+...|....|+|+|++|.
T Consensus       230 ~~pL~~~glgg~slLkwSPdgd~lfaA----t~davfrlw~e~q~w---------t~erw~lgsgrvqtacWspcGsfLL  296 (445)
T KOG2139|consen  230 KIPLIPKGLGGFSLLKWSPDGDVLFAA----TCDAVFRLWQENQSW---------TKERWILGSGRVQTACWSPCGSFLL  296 (445)
T ss_pred             cccccccCCCceeeEEEcCCCCEEEEe----cccceeeeehhcccc---------eecceeccCCceeeeeecCCCCEEE
Confidence            87766 455678889999999999876    334667777543222         1122222333789999999999877


Q ss_pred             EEecCCCccccceEEEEEcCCCC----------eEEEEEeeeee------C---CCCCCcceeeeeCCCCCCCceEEEEe
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTP----------LISLSLIGFIR------G---PGDNPKPVAFSFHDKFKQGPLLSVCW  426 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~----------~~~~~~~~~~~------~---~~~~i~~v~~spdg~~~~~~~l~~~~  426 (444)
                      .+..       +.-++|.+....          .....++..+.      +   -.+.+.+++|.|.|.|     |++-+
T Consensus       297 f~~s-------gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey-----Lav~f  364 (445)
T KOG2139|consen  297 FACS-------GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY-----LAVIF  364 (445)
T ss_pred             EEEc-------CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE-----EEEEE
Confidence            6665       344555543110          00111221111      1   1456789999999987     66666


Q ss_pred             ccce
Q 013347          427 SSGF  430 (444)
Q Consensus       427 ~~g~  430 (444)
                      +.+.
T Consensus       365 Kg~~  368 (445)
T KOG2139|consen  365 KGQS  368 (445)
T ss_pred             cCCc
Confidence            6444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=7.3e-14  Score=112.88  Aligned_cols=200  Identities=15%  Similarity=0.167  Sum_probs=148.9

Q ss_pred             cccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus        98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .-.+|+++...|..+-+++++.|+.++-||+++ ++....+ .+|++-|.++.--.....+++++.||++|+||.++.+.
T Consensus       113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             cCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence            334699999999888888888999999999998 6666666 69999999999855558899999999999999998887


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                      ...+...                +-...++.|-...|.+++.  +..++++|+..  .+.+|.++..++..++.....+.
T Consensus       191 v~~ie~y----------------k~~~~lRp~~g~wigala~--~edWlvCGgGp--~lslwhLrsse~t~vfpipa~v~  250 (325)
T KOG0649|consen  191 VSMIEPY----------------KNPNLLRPDWGKWIGALAV--NEDWLVCGGGP--KLSLWHLRSSESTCVFPIPARVH  250 (325)
T ss_pred             eEEeccc----------------cChhhcCcccCceeEEEec--cCceEEecCCC--ceeEEeccCCCceEEEeccccee
Confidence            7766544                1223355555566777776  45688887755  69999999999999999899999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      .+.|.  .+.+++++..+.|.-|.+..--....+......++..|+..--.+++..+...++.+
T Consensus       251 ~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i  312 (325)
T KOG0649|consen  251 LVDFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHI  312 (325)
T ss_pred             Eeeee--cceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeee
Confidence            99996  456788888889999988653223334444455666665544444444444444433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.63  E-value=2.9e-12  Score=110.21  Aligned_cols=255  Identities=13%  Similarity=0.208  Sum_probs=171.2

Q ss_pred             ceEEEEEecCCCeEEEEEC---CCeEEEEEccCC-CCceeEEec-CCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCC
Q 013347          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDS-GKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~---dg~v~iw~~~~~-~~~~~~~~~-~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~  174 (444)
                      ..+-++|+|+++.|.++..   +|.|.-|.++.. +........ .-..+...++++++++.++++... |.|.++-+..
T Consensus        41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~  120 (346)
T COG2706          41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA  120 (346)
T ss_pred             CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc
Confidence            5778999999999988753   578888888853 333332211 122334789999997777777664 9999999976


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeec-c---CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-Q---NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  250 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~  250 (444)
                      .+.+......                 ....-.+ |   ....+....+.|++++|++....-..|.+|++..+......
T Consensus       121 dG~l~~~v~~-----------------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~  183 (346)
T COG2706         121 DGSLQPVVQV-----------------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD  183 (346)
T ss_pred             CCccccceee-----------------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence            5544433211                 0000010 0   01238899999999999988643337999999977654322


Q ss_pred             ----cCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCC--Cceeccc---------cCCCceeEEEECCCCCEEEEEEc
Q 013347          251 ----RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNT--WTSEPWS---------STSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       251 ----~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~--~~~~~~~---------~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                          ......+.++|+|++++....+ -+++|.+|..+.  ++...++         ....+...+..+|+|++|+++..
T Consensus       184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR  263 (346)
T COG2706         184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR  263 (346)
T ss_pred             ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence                3346789999999999985554 589999999877  4433222         23445678899999999998876


Q ss_pred             CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      ....+..+++.....         ....+.....+. ..+.+.|+|.|++|+++..++     ..|.+|.+..
T Consensus       264 g~dsI~~f~V~~~~g---------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-----d~i~vf~~d~  322 (346)
T COG2706         264 GHDSIAVFSVDPDGG---------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-----DNITVFERDK  322 (346)
T ss_pred             CCCeEEEEEEcCCCC---------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-----CcEEEEEEcC
Confidence            666677777643210         011111222222 468899999999999999986     5688887653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=9.5e-15  Score=129.09  Aligned_cols=273  Identities=16%  Similarity=0.179  Sum_probs=188.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC--CeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~--~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|..+.|+..|..|++|+.|..|.+||+.. +.....+..+|...|..-.|-|..  ..++.++.||.|++=.+...+..
T Consensus       144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~-~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~  222 (559)
T KOG1334|consen  144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVS-GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV  222 (559)
T ss_pred             ccceeeecccCceeeccCccceEEeehhhc-cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence            599999999999999999999999999998 566666667999999998897743  56888888999998777633222


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCceee---ec-CC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI---RR-GF  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~~~---~~-~~  253 (444)
                      .                      -...+..|+ +.|.-++.-|+. ..|.+++.|+ .+.-+|++.+.....   .. +.
T Consensus       223 e----------------------~t~rl~~h~-g~vhklav~p~sp~~f~S~geD~-~v~~~Dlr~~~pa~~~~cr~~~~  278 (559)
T KOG1334|consen  223 E----------------------NTKRLAPHE-GPVHKLAVEPDSPKPFLSCGEDA-VVFHIDLRQDVPAEKFVCREADE  278 (559)
T ss_pred             e----------------------cceeccccc-CccceeeecCCCCCccccccccc-ceeeeeeccCCccceeeeeccCC
Confidence            1                      122344554 899999999854 4588899998 999999987643321   12 22


Q ss_pred             C---CeEEEEEecCCC-eEEEEecCCcEEEEECCCCcee-------ccc------cCCCceeEEEECCCCCEEEEEEcCC
Q 013347          254 G---GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-------PWS------STSGFVTGATWDPEGRMILLAFAGS  316 (444)
Q Consensus       254 ~---~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~-------~~~------~~~~~v~~~~~sp~g~~l~~~~~~~  316 (444)
                      .   ....++.+|... ++++++.|..+++||.+.-...       .+.      ...-.|++++|+.++.-++++.++ 
T Consensus       279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD-  357 (559)
T KOG1334|consen  279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND-  357 (559)
T ss_pred             ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc-
Confidence            3   467889998654 7899999999999998753321       111      234468999999777666655433 


Q ss_pred             ceEEEEEeecCCCCcCCCcCCCC---cccccccccCC---ceeEEE-ECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          317 LTLGSIHFASKPPSLDAHLLPVD---LPDIVSLTGSQ---GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~v~~~~-~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      ..++.+.-...   ......+..   ....+.+++|.   .|..+- |.|...|+++||.-      |.|.||+-+++++
T Consensus       358 e~IYLF~~~~~---~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC------GhIFiW~K~t~ei  428 (559)
T KOG1334|consen  358 EDIYLFNKSMG---DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC------GHIFIWDKKTGEI  428 (559)
T ss_pred             cceEEeccccc---cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc------ceEEEEecchhHH
Confidence            34444421111   110111111   12223378887   677776 57899999999877      9999999998877


Q ss_pred             EEEEEeeeeeCCCCCCcceeeeeC
Q 013347          390 ISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       390 ~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      +     ..+.+-...|.|+.=+|-
T Consensus       429 i-----~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  429 I-----RFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             H-----HHhhcccceEeccCCCCC
Confidence            6     445554445666665553

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=4.5e-13  Score=126.90  Aligned_cols=303  Identities=14%  Similarity=0.162  Sum_probs=199.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      -.++.+++.|.+.+.. .+..+.+|++....+.  ..-....|.-.+++.++||+++.++++..||.|.+|.--....  
T Consensus       163 ~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~--  239 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD--  239 (792)
T ss_pred             CccEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--
Confidence            4678888988877665 4556788988863211  1112235777799999999988888888899999997542100  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  259 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~  259 (444)
                                         .-...+.+..|+ ..|.+++|+++|.+|++|+..+ .+.+|.+.+++...+....+.|..+
T Consensus       240 -------------------~~~t~t~lHWH~-~~V~~L~fS~~G~~LlSGG~E~-VLv~Wq~~T~~kqfLPRLgs~I~~i  298 (792)
T KOG1963|consen  240 -------------------DSETCTLLHWHH-DEVNSLSFSSDGAYLLSGGREG-VLVLWQLETGKKQFLPRLGSPILHI  298 (792)
T ss_pred             -------------------ccccceEEEecc-cccceeEEecCCceEeecccce-EEEEEeecCCCcccccccCCeeEEE
Confidence                               001234577787 7999999999999999999998 9999999999966677788999999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCceec----cc--------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----~~--------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      .++||+.+.+....|+.|.+....+...+.    +.        ...+-.+.++++|.-+.++.. ...+.+..+++...
T Consensus       299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln-~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN-GHPGHVQFYDLYTD  377 (792)
T ss_pred             EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeec-CCCceEEEEecccc
Confidence            999999999999999999999875543311    11        123446778899954444433 23344444444332


Q ss_pred             CCCcCCCcCCCCccccccccc---CC-ceeEEEECCCCCEEEEEecCCC--ccc--cceEEEEEcCCCCeEEEEEeeeee
Q 013347          328 PPSLDAHLLPVDLPDIVSLTG---SQ-GIEKIAWDASGERLAVSYKGGD--DIY--KGLIAIYDARRTPLISLSLIGFIR  399 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~d~~--~~~--d~~i~vwd~~~~~~~~~~~~~~~~  399 (444)
                      ..     ++...........+   +. .+++++.+-.|.+++|.-.-.+  ...  ...+++|-................
T Consensus       378 ~~-----i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~  452 (792)
T KOG1963|consen  378 ST-----IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN  452 (792)
T ss_pred             ce-----eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec
Confidence            11     11100000011111   12 7888899989999998754321  112  257899987755443222223345


Q ss_pred             CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          400 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .|+..+...+|.+.-+-.  .++.+ -.+|.+++|.+.
T Consensus       453 PH~~~~vat~~~~~~rs~--~~vta-~~dg~~KiW~~~  487 (792)
T KOG1963|consen  453 PHGNAFVATIFLNPTRSV--RCVTA-SVDGDFKIWVFT  487 (792)
T ss_pred             CCCceeEEEEEecCcccc--eeEEe-ccCCeEEEEEEe
Confidence            788877777777654432  33333 378999999884

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=6.8e-14  Score=134.57  Aligned_cols=246  Identities=16%  Similarity=0.202  Sum_probs=166.6

Q ss_pred             ceEEEEEec--CCCeEEEEECCCeEEEEEccCCC-CceeEEec---------CCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347          101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSG-KDACILTS---------DSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~---------~~~~~v~~l~~s~~~~~ll~~~~dg~v~  168 (444)
                      .|+.+.+-.  |..++.+++.||.|+||+-.... +....++.         +..+.=.-+.|....++|+++|.-..|+
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence            477887765  45688899999999999866542 22222211         1112224467988888899888889999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      |||.........+..+                         ....|+++.-+ +.|+.+++|..|| .|++||.+.....
T Consensus      1191 IWDa~~E~~~~diP~~-------------------------s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYG-------------------------SSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPD 1244 (1387)
T ss_pred             EEecccceeEeecccC-------------------------CCccceeecccccCCceEEEeecCC-ceEEeecccCCcc
Confidence            9999855444443332                         23456666544 3578999999998 9999999865432


Q ss_pred             ----eeecCCCC--eEEEEEecCCC-eEEEEecCCcEEEEECCCCceecc-c--cC---CCceeEEEECCCCCEEEEEEc
Q 013347          248 ----PIRRGFGG--LSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPW-S--ST---SGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       248 ----~~~~~~~~--v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~~-~--~~---~~~v~~~~~sp~g~~l~~~~~  314 (444)
                          ....|...  |..+.+.+.|- .|++|+.+|.|++||++......+ .  .|   .+.++++..++....+|+|+.
T Consensus      1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence                24456555  99999998664 499999999999999998533221 1  22   335899999999999987754


Q ss_pred             CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                        ..+.+|.+....      +....  .-..+-+..  .+.+++|+|..-+||+|+.|      .+|.||......
T Consensus      1325 --q~ikIy~~~G~~------l~~~k--~n~~F~~q~~gs~scL~FHP~~~llAaG~~D------s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 --QLIKIYSLSGEQ------LNIIK--YNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD------STVSIYSCEKPR 1384 (1387)
T ss_pred             --ceEEEEecChhh------hcccc--cCcccccCcCCCcceeeecchhHhhhhccCC------ceEEEeecCCcC
Confidence              445555542210      00000  001122222  67999999999999999888      899999877543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=9.8e-13  Score=125.17  Aligned_cols=181  Identities=17%  Similarity=0.231  Sum_probs=124.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCc
Q 013347          212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~  286 (444)
                      ..+....|+|||+.|+..+.++  ..|.+||+.+++...+....+.+...+|+|||+.|+ +...++  .|++||+.+++
T Consensus       199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            5789999999999998876542  269999999887766665556666799999999886 444444  68888999988


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ...+..+........|+|+|+.|++....++  .++.+++..              .....+.... ......|+|||++
T Consensus       279 ~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--------------g~~~~lt~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        279 LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--------------GRAERVTFVGNYNARPRLSADGKT  344 (430)
T ss_pred             eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--------------CCEEEeecCCCCccceEECCCCCE
Confidence            7766666666778899999999887765433  344444311              1111222111 3345789999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      |+..+.....   ..|.+||+.+++...      +.. ........|||||++
T Consensus       345 i~~~~~~~~~---~~l~~~dl~tg~~~~------lt~-~~~~~~p~~spdg~~  387 (430)
T PRK00178        345 LVMVHRQDGN---FHVAAQDLQRGSVRI------LTD-TSLDESPSVAPNGTM  387 (430)
T ss_pred             EEEEEccCCc---eEEEEEECCCCCEEE------ccC-CCCCCCceECCCCCE
Confidence            9887754211   368899998876531      111 112235689999987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.60  E-value=1.4e-12  Score=119.46  Aligned_cols=248  Identities=15%  Similarity=0.170  Sum_probs=152.3

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceee
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~  182 (444)
                      .+.|+|||+++++++.||.|.++|+.+ .+....+.  -.....++++|+||++++++.. .+.+.++|.++.+....+.
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            467999999999999999999999998 45544443  3445788999999888877765 6999999998665555554


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEE
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILK  260 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~  260 (444)
                      .+...                  ... ...++..+..+|....++..-.|.+.|.+.|....+...  ............
T Consensus       118 ~~~~~------------------~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~  178 (369)
T PF02239_consen  118 TGGMP------------------VDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG  178 (369)
T ss_dssp             --EE-------------------TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred             ccccc------------------ccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccc
Confidence            43100                  001 135788888899888777777765589888887765443  333456788899


Q ss_pred             EecCCCeEEEE-ecCCcEEEEECCCCceeccc-----c---------CCC------------------------------
Q 013347          261 WSPTGDYFFAA-KFDGTFYLWETNTWTSEPWS-----S---------TSG------------------------------  295 (444)
Q Consensus       261 ~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~-----~---------~~~------------------------------  295 (444)
                      |+|++++++++ ..++.|-++|.++++.....     .         |..                              
T Consensus       179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~  258 (369)
T PF02239_consen  179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA  258 (369)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred             cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence            99999998654 45668888888776542110     0         000                              


Q ss_pred             -----------ceeEEEECCCCCEEEEE---EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECC
Q 013347          296 -----------FVTGATWDPEGRMILLA---FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDA  359 (444)
Q Consensus       296 -----------~v~~~~~sp~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp  359 (444)
                                 .-.-+..+|+++++.+.   ..+...+..++..             +...+.++....  .+..+.|++
T Consensus       259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~-------------tl~~~~~i~~~~~~~~~h~ef~~  325 (369)
T PF02239_consen  259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK-------------TLKVVKTITPGPGKRVVHMEFNP  325 (369)
T ss_dssp             TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC-------------GTEEEE-HHHHHT--EEEEEE-T
T ss_pred             CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECc-------------CcceeEEEeccCCCcEeccEECC
Confidence                       01234457788877766   3344555555542             223334443222  588999999


Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ||+++..+..+.+    +.|.+||.++.++.
T Consensus       326 dG~~v~vS~~~~~----~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  326 DGKEVWVSVWDGN----GAIVVYDAKTLKEK  352 (369)
T ss_dssp             TSSEEEEEEE--T----TEEEEEETTTTEEE
T ss_pred             CCCEEEEEEecCC----CEEEEEECCCcEEE
Confidence            9999888877742    48999999997776

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=9e-13  Score=125.24  Aligned_cols=181  Identities=20%  Similarity=0.288  Sum_probs=127.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE-EecCC--cEEEEECCCCc
Q 013347          212 EQITALSWGPDGRYLASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~iwd~~~~~  286 (444)
                      ..+...+|+|||++|+.+...+  ..|++||+.+++...+..+.+.+.+++|+|||+.|+. .+.++  .|++||+.+++
T Consensus       190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            4688899999999999876543  3799999998877666666677778999999998764 44443  69999999887


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ...+..+........|+|+|+.|++.....+  .++.+++.              ......+..+. .+..+.|+|||++
T Consensus       270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~--------------~~~~~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD--------------GGEVRRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEeecCCCCccCeEECCCCCE
Confidence            7666666555667899999999887665433  34444431              11222333233 5678899999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      |+.++.+...   ..|.+||+.++...      .+... ......+|+|||++
T Consensus       336 i~~~~~~~~~---~~i~~~d~~~~~~~------~l~~~-~~~~~p~~spdg~~  378 (417)
T TIGR02800       336 IAFVHREGGG---FNIAVMDLDGGGER------VLTDT-GLDESPSFAPNGRM  378 (417)
T ss_pred             EEEEEccCCc---eEEEEEeCCCCCeE------EccCC-CCCCCceECCCCCE
Confidence            9988876311   37999999875542      12221 23456789999986

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=3.6e-12  Score=107.26  Aligned_cols=233  Identities=15%  Similarity=0.127  Sum_probs=149.9

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-C------CcEEEEecCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K------GGICIWAPSY  174 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-d------g~v~iw~~~~  174 (444)
                      ..+++|+.|...+++|..+| .+||+.+.-.+........-.-.+..+-|-.  +.++.+|+ .      +.|.|||=..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc
Confidence            45699999999999987666 5999988521111111111112233333333  35544443 2      6799999331


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-Cceeeec--
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRR--  251 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~--  251 (444)
                      ..                         ++.++.-  ...|.++.+.++  +|++.- ++ .|.||...+. +......  
T Consensus        85 ~~-------------------------~i~el~f--~~~I~~V~l~r~--riVvvl-~~-~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   85 ER-------------------------CIIELSF--NSEIKAVKLRRD--RIVVVL-EN-KIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             Cc-------------------------EEEEEEe--ccceeeEEEcCC--eEEEEe-cC-eEEEEEcCCChhheeeeecc
Confidence            11                         2222222  268999999765  455544 33 8999999854 3333222  


Q ss_pred             -CCCCeEEEEEecCCCeEEE-EecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          252 -GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       252 -~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                       .+..+.+++=+.+..+|+. |-.-|.|+|-|+...+.   ..+..|.+.|.|++.+.+|..+|+++..+..+++++-. 
T Consensus       134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~-  212 (346)
T KOG2111|consen  134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE-  212 (346)
T ss_pred             cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC-
Confidence             2334433332223334433 44568999999987666   56779999999999999999999887776556665532 


Q ss_pred             CCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                                  ++..+..++-.   ..|.+++||||+.+||++|.-      |++.||.++..
T Consensus       213 ------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK------gTlHiF~l~~~  258 (346)
T KOG2111|consen  213 ------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK------GTLHIFSLRDT  258 (346)
T ss_pred             ------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC------CeEEEEEeecC
Confidence                        34455555432   289999999999999999877      99999998753

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.1e-13  Score=119.27  Aligned_cols=261  Identities=11%  Similarity=0.049  Sum_probs=173.6

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|.++.|+.+++.|+++|.|..+++|+++..-... +.                  +.+.....|+...|.|++|
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-~~------------------KPI~~~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-TP------------------KPIGVMEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-CC------------------CCceeccCccccceEEEEE
Confidence            4899999999999997777777888999999987211100 00                  1122233445589999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC---CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----ecccc
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSS  292 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~  292 (444)
                      +...+.+++|..++ +|.+.|+++.+.+.+..+.   +.|..+..+|..+.|++.+.++.|.+||.+....    .....
T Consensus       114 ~~~N~~~~SG~~~~-~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN  192 (609)
T KOG4227|consen  114 DLENRFLYSGERWG-TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN  192 (609)
T ss_pred             ccCCeeEecCCCcc-eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC
Confidence            99999999999998 9999999999888887775   4899999999999999999999999999987652    22234


Q ss_pred             CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347          293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~  371 (444)
                      ......++.|+|....|+...+..+-...|+.......+-.      ......+.... .-.++.|+|.|..|.+.-.. 
T Consensus       193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~------~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~-  265 (609)
T KOG4227|consen  193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ------RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG-  265 (609)
T ss_pred             CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh------hhccccCcccchhhhheeeCCCCCeehhhhcc-
Confidence            55667899999988766655555555666665432111100      00011122111 33567899999888776555 


Q ss_pred             CccccceEEEEEcCCCCeEEEEEeeeeeC--CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          372 DDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                           ..-.+||+.+..+...+.-..-.|  ....+.+++|.-|-      .++.|.++=.|++|.+.-
T Consensus       266 -----~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~------~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  266 -----KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY------TVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             -----CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce------eeeccCcccceEEEecCC
Confidence                 455677776644331111100001  12235566665442      255566666777777643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.3e-12  Score=124.00  Aligned_cols=181  Identities=17%  Similarity=0.225  Sum_probs=122.2

Q ss_pred             CceEEEEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE-EecCC--cEEEEECCCCc
Q 013347          212 EQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~iwd~~~~~  286 (444)
                      ..+.+..|+|||+.|+..+.+++  .|.+||+.+++...+....+.....+|+|||+.|+. .+.++  .|+++|+.+++
T Consensus       218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~  297 (448)
T PRK04792        218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA  297 (448)
T ss_pred             CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence            57889999999999988765432  688999988876655554555567899999998864 45566  48888999888


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ...+..+......++|+|+|+.|++....++.  ++.+++.              ......+.... .....+|+|||++
T Consensus       298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------------~g~~~~Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        298 LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------------SGKVSRLTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------------CCCEEEEecCCCCCcCeeECCCCCE
Confidence            77776666667889999999999877654433  3333331              11122222111 2345789999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      |+..+.+...   ..|.++|+.+++...      +... ......+|+|||++
T Consensus       364 l~~~~~~~g~---~~I~~~dl~~g~~~~------lt~~-~~d~~ps~spdG~~  406 (448)
T PRK04792        364 MIMVNRTNGK---FNIARQDLETGAMQV------LTST-RLDESPSVAPNGTM  406 (448)
T ss_pred             EEEEEecCCc---eEEEEEECCCCCeEE------ccCC-CCCCCceECCCCCE
Confidence            9887765311   356777888776431      1211 12235689999987

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.3e-12  Score=121.27  Aligned_cols=184  Identities=13%  Similarity=0.122  Sum_probs=119.4

Q ss_pred             CceEEEEEccCCCe--EEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC----cEEEEEC
Q 013347          212 EQITALSWGPDGRY--LASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG----TFYLWET  282 (444)
Q Consensus       212 ~~v~~~~~sp~~~~--l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~----~v~iwd~  282 (444)
                      ....+-+|+|||+.  ++..+. ++ ..|.+.++.+++...+....+.....+|+|||+.|+..+. +|    .+.+|++
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~  264 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL  264 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence            45677899999986  332333 22 2688889998887777777777778999999998876543 22    3444777


Q ss_pred             CCC---ceeccccC-CCceeEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE
Q 013347          283 NTW---TSEPWSST-SGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI  355 (444)
Q Consensus       283 ~~~---~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  355 (444)
                      .++   +...+... .......+|+|||+.|++....++.  ++.+.+..            .......++.+. .+...
T Consensus       265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~------------~g~~~~~lt~~~~~~~~p  332 (428)
T PRK01029        265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP------------EGQSPRLLTKKYRNSSCP  332 (428)
T ss_pred             ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc------------cccceEEeccCCCCccce
Confidence            653   33333322 2345678999999998877654443  33333210            111223333333 56788


Q ss_pred             EECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          356 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       356 ~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      .|||||++|+..+.+...   ..|.+||+.+++...      +......+....|+|||++
T Consensus       333 ~wSPDG~~Laf~~~~~g~---~~I~v~dl~~g~~~~------Lt~~~~~~~~p~wSpDG~~  384 (428)
T PRK01029        333 AWSPDGKKIAFCSVIKGV---RQICVYDLATGRDYQ------LTTSPENKESPSWAIDSLH  384 (428)
T ss_pred             eECCCCCEEEEEEcCCCC---cEEEEEECCCCCeEE------ccCCCCCccceEECCCCCE
Confidence            999999999887654321   579999999887542      2222334678899999986

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.58  E-value=5.2e-13  Score=111.18  Aligned_cols=159  Identities=19%  Similarity=0.360  Sum_probs=105.3

Q ss_pred             EEEEEccCCCeEEEEee---CC------CeEEEEEcCC--CCceeee-cCCCCeEEEEEecCCCeEEEE--ecCCcEEEE
Q 013347          215 TALSWGPDGRYLASASY---ES------SSFTIWDVAQ--GLGTPIR-RGFGGLSILKWSPTGDYFFAA--KFDGTFYLW  280 (444)
Q Consensus       215 ~~~~~sp~~~~l~~~~~---d~------~~i~iwd~~~--~~~~~~~-~~~~~v~~~~~sp~~~~l~~~--~~d~~v~iw  280 (444)
                      ..+.|+|+|++|+.-..   |.      +...+|.++.  .....+. ...++|.+++|+|+|+.|++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            56889999988776543   11      1455665533  2222222 234579999999999987544  457799999


Q ss_pred             ECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCC
Q 013347          281 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS  360 (444)
Q Consensus       281 d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  360 (444)
                      |++......+  +...++.+.|+|+|+++++++-++ .-+.+.+|+..          +...+.+.. |..++.++|+||
T Consensus        89 d~~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~----------~~~~i~~~~-~~~~t~~~WsPd  154 (194)
T PF08662_consen   89 DVKGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVR----------KKKKISTFE-HSDATDVEWSPD  154 (194)
T ss_pred             cCcccEeEee--cCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECC----------CCEEeeccc-cCcEEEEEEcCC
Confidence            9974333333  346778999999999999876432 22445555432          223333332 336789999999


Q ss_pred             CCEEEEEecCCCccccceEEEEEcCCC
Q 013347          361 GERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       361 g~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      |++|+++.....-+.|+.++||+....
T Consensus       155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  155 GRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEEEEEeccceeccccEEEEEecCe
Confidence            999999886533334589999999743

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=1.4e-14  Score=127.22  Aligned_cols=268  Identities=16%  Similarity=0.189  Sum_probs=196.0

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .++-..+.++.+|+.|+.|+..|.|..+|+.+ .+....+  .-...|.++.|-.+ ..+++++....++|||-. +   
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei--~v~Etv~Dv~~LHn-eq~~AVAQK~y~yvYD~~-G---  200 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEI--NVMETVRDVTFLHN-EQFFAVAQKKYVYVYDNN-G---  200 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeee--ehhhhhhhhhhhcc-hHHHHhhhhceEEEecCC-C---
Confidence            55678899999999999999999999999997 4444333  34668999999888 788899999999999975 1   


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~  257 (444)
                                            ..++.++.|  ..|..+.|-|.--+|++++..| .++.-|+.+|+.+. +....+.+.
T Consensus       201 ----------------------tElHClk~~--~~v~rLeFLPyHfLL~~~~~~G-~L~Y~DVS~GklVa~~~t~~G~~~  255 (545)
T KOG1272|consen  201 ----------------------TELHCLKRH--IRVARLEFLPYHFLLVAASEAG-FLKYQDVSTGKLVASIRTGAGRTD  255 (545)
T ss_pred             ----------------------cEEeehhhc--CchhhhcccchhheeeecccCC-ceEEEeechhhhhHHHHccCCccc
Confidence                                  134455555  5899999999988888888887 99999999998776 445568888


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .++-+|-+-.+-+|...|+|.+|.....+. ..+..|.+.|.++++.++|+++++++- +..+.+|+++..         
T Consensus       256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~---------  325 (545)
T KOG1272|consen  256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF---------  325 (545)
T ss_pred             hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc---------
Confidence            899999888899999999999999988777 567799999999999999999997743 355566665431         


Q ss_pred             CCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCC--CCCCcceeeeeC
Q 013347          337 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGP--GDNPKPVAFSFH  413 (444)
Q Consensus       337 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~--~~~i~~v~~spd  413 (444)
                          ..+.++....+...+++|..|- ||.+ .+      ..+.||.-. .+......   -+..|  ...|..+.|.|-
T Consensus       326 ----~ql~t~~tp~~a~~ls~Sqkgl-LA~~-~G------~~v~iw~d~~~~s~~~~~---pYm~H~~~~~V~~l~FcP~  390 (545)
T KOG1272|consen  326 ----YQLHTYRTPHPASNLSLSQKGL-LALS-YG------DHVQIWKDALKGSGHGET---PYMNHRCGGPVEDLRFCPY  390 (545)
T ss_pred             ----cccceeecCCCccccccccccc-eeee-cC------CeeeeehhhhcCCCCCCc---chhhhccCcccccceeccH
Confidence                2222332222677888887663 4443 33      579999532 11100011   11122  447889999985


Q ss_pred             CCCCCCceEEEEeccc
Q 013347          414 DKFKQGPLLSVCWSSG  429 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g  429 (444)
                      ..     +|.||-..|
T Consensus       391 ED-----vLGIGH~~G  401 (545)
T KOG1272|consen  391 ED-----VLGIGHAGG  401 (545)
T ss_pred             HH-----eeeccccCC
Confidence            33     355554444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.5e-11  Score=115.01  Aligned_cols=219  Identities=10%  Similarity=-0.019  Sum_probs=135.6

Q ss_pred             EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe-EEEEecC---CcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          123 VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       123 v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      -+||-.+..+.....++.+  +......|+|||++ ++.++.+   ..|.++|+.++. ...+.                
T Consensus       169 ~~l~~~d~dg~~~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-~~~lt----------------  229 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-KEKIA----------------  229 (419)
T ss_pred             ceEEEECCCCCceeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-EEEEe----------------
Confidence            4455444435545544433  37788999999886 5544443   457777776322 11111                


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG  275 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~  275 (444)
                               .. .+......|+|||+.++.... ++ ..|.++|+.+++..++..+........|+|||+.|+..+. .+
T Consensus       230 ---------~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g  299 (419)
T PRK04043        230 ---------SS-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG  299 (419)
T ss_pred             ---------cC-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence                     11 245667889999988776543 21 2788889888877666665544456789999998866553 23


Q ss_pred             --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC--------ceEEEEEeecCCCCcCCCcCCCCcccccc
Q 013347          276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVS  345 (444)
Q Consensus       276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (444)
                        .|.++|+.+++...+......  ...|+|+|+.|+......        ..++.+++.              ....+.
T Consensus       300 ~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~--------------~g~~~~  363 (419)
T PRK04043        300 YPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN--------------SDYIRR  363 (419)
T ss_pred             CceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC--------------CCCeEE
Confidence              688889998887554432222  258999999998776443        234444431              222233


Q ss_pred             cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          346 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       346 ~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      ++.........|+|||+.|+.....+..   ..+.+.++..+..
T Consensus       364 LT~~~~~~~p~~SPDG~~I~f~~~~~~~---~~L~~~~l~g~~~  404 (419)
T PRK04043        364 LTANGVNQFPRFSSDGGSIMFIKYLGNQ---SALGIIRLNYNKS  404 (419)
T ss_pred             CCCCCCcCCeEECCCCCEEEEEEccCCc---EEEEEEecCCCee
Confidence            3333223368899999998887765422   4577888876443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.6e-11  Score=103.49  Aligned_cols=177  Identities=15%  Similarity=0.203  Sum_probs=130.9

Q ss_pred             CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC-CCCcceeeccccccccccccCCCCc
Q 013347          121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY-PGNAASVRSGAASFLGALSRGPGTR  199 (444)
Q Consensus       121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  199 (444)
                      +.|.|||=   -+...+.......+|.++.++++   .+++...+.|.+|.... .+....+.+.               
T Consensus        75 NkviIWDD---~k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~---------------  133 (346)
T KOG2111|consen   75 NKVIIWDD---LKERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETR---------------  133 (346)
T ss_pred             ceEEEEec---ccCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecc---------------
Confidence            46999993   23334443467889999999987   55566789999999873 2222222211               


Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc---eeeecCCCCeEEEEEecCCCeEEEEecCCc
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYFFAAKFDGT  276 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  276 (444)
                             ..  ...+.+++-+.+..+||.-+..-|.|+|-|+...+.   ..+..|.+.|.|++.+-+|..+|+++..|+
T Consensus       134 -------~N--PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT  204 (346)
T KOG2111|consen  134 -------SN--PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT  204 (346)
T ss_pred             -------cC--CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE
Confidence                   11  234555555556667777676656999999987766   568889999999999999999999999985


Q ss_pred             -EEEEECCCCcee-ccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          277 -FYLWETNTWTSE-PWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       277 -v~iwd~~~~~~~-~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                       |||||..+|+.. .+.  .....+.+++|||+..+|+++ ++.+++.++.+.+..
T Consensus       205 LIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  205 LIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE-cCCCeEEEEEeecCC
Confidence             899999999873 333  345679999999999999976 555889999887654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=9.3e-14  Score=124.66  Aligned_cols=226  Identities=16%  Similarity=0.185  Sum_probs=159.2

Q ss_pred             EEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEec--CCCeEEEEecCCcE
Q 013347          202 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSP--TGDYFFAAKFDGTF  277 (444)
Q Consensus       202 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp--~~~~l~~~~~d~~v  277 (444)
                      +...+.||. +-|.++.|+.+|.+|++|+.|- .+.|||.-..+...  -.+|...|.++.|-|  +.+++++|..|..|
T Consensus        42 lE~eL~GH~-GCVN~LeWn~dG~lL~SGSDD~-r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHT-GCVNCLEWNADGELLASGSDDT-RLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhcccc-ceecceeecCCCCEEeecCCcc-eEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            455788996 8999999999999999999997 99999998766555  346789999999999  46678999999999


Q ss_pred             EEEECCCCce-----------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc
Q 013347          278 YLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL  346 (444)
Q Consensus       278 ~iwd~~~~~~-----------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (444)
                      +++|+...+.           ..+..|...|..++-.|++...+-++++++.+..+++..........-   -...+..+
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~---~~~~l~ny  196 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED---CPSILVNY  196 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc---ccHHHHHh
Confidence            9999985221           224478888999999999988887888999999998865321110000   00011111


Q ss_pred             ccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCC--------CCeEEE-----EEeee-eeCCC--------
Q 013347          347 TGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARR--------TPLISL-----SLIGF-IRGPG--------  402 (444)
Q Consensus       347 ~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~--------~~~~~~-----~~~~~-~~~~~--------  402 (444)
                      ...- ...++.++|.. .+|++|+.|      --.++||.+.        +.....     ..+.. ..+|.        
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsd------pfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSD------PFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCC------chhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            1111 56789999966 678888887      7899999431        110000     00111 12222        


Q ss_pred             ---CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeeccCC
Q 013347          403 ---DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL  443 (444)
Q Consensus       403 ---~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~~~  443 (444)
                         ..++-+.|+|+|.-     |.+.|..-.|++|++.+...-+
T Consensus       271 ~~~~~~t~vtfnpNGtE-----lLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTE-----LLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             cceeeeEEEEECCCCcE-----EEEeeCCeEEEEEeecCCCCce
Confidence               11356788998875     7899999999999998876543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.55  E-value=4.1e-12  Score=124.45  Aligned_cols=263  Identities=12%  Similarity=0.045  Sum_probs=163.0

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCc----eeEEe-cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKD----ACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~----~~~~~-~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~  174 (444)
                      .|..++.++ ++.++++||.||+|++|+...-...    ....+ ......+.++.+.+.+..+++++.||.|++.+++.
T Consensus      1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            355666665 4599999999999999998753111    11111 23577899999999999999999999999999984


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE-EEEEcc-CCC-eEEEEeeCCCeEEEEEcCCCCceeee-
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGP-DGR-YLASASYESSSFTIWDVAQGLGTPIR-  250 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp-~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~-  250 (444)
                      ........                  .+.+....+..+.+. .-+|.. .+. .++.+...+ .|..||++........ 
T Consensus      1130 ~~~~~~~~------------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1130 YNVSKRVA------------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS-RIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred             ccccccee------------------eeeecccccCCCceEEeecccccccceeEEEEEecc-ceEEecchhhhhHHhhh
Confidence            31111111                  111222222223333 334433 333 567777776 9999999887554432 


Q ss_pred             --cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCC---CEEEEEEc-CCceEEEE
Q 013347          251 --RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG---RMILLAFA-GSLTLGSI  322 (444)
Q Consensus       251 --~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g---~~l~~~~~-~~~~~~~~  322 (444)
                        ...+.|++++.+|.++++++|+..|.+.+||++=+....  -.++..+++.+..+|--   ...++++. ..+.+-.|
T Consensus      1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence              235889999999999999999999999999999776632  23555778888877643   35554444 44445555


Q ss_pred             EeecCCCCcCCCcCCCCccc-cc-------ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          323 HFASKPPSLDAHLLPVDLPD-IV-------SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .+.....  ...+|..+..+ +.       .-+.+. ......+.--+..+.+|+.|      ..|+.||....+..
T Consensus      1271 n~~~g~~--~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd------~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLR--QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD------MKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ecccCcc--eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc------cceeeccCCCcccc
Confidence            5433210  00011110000 00       000112 23334444455678888888      89999999865543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=5.8e-14  Score=123.50  Aligned_cols=215  Identities=16%  Similarity=0.153  Sum_probs=161.0

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      ..+.+.++.+|++++.++..|.|..+|+.+......                         +..  ...|.++.|-.+.+
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------------------------i~v--~Etv~Dv~~LHneq  183 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------------------------INV--METVRDVTFLHNEQ  183 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeee-------------------------eeh--hhhhhhhhhhcchH
Confidence            457799999999999999999999999984432222                         222  26789999999888


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEEC
Q 013347          225 YLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWD  303 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~s  303 (444)
                      ++|++-. . .++|||-. |...........|..+.|-|..-+|++++..|.++.-|+.+|+.. .+....+.+..++-+
T Consensus       184 ~~AVAQK-~-y~yvYD~~-GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  184 FFAVAQK-K-YVYVYDNN-GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             HHHhhhh-c-eEEEecCC-CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence            8887654 3 89999954 445555555678999999999888899999999999999999983 455566778888889


Q ss_pred             CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          304 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       304 p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                      |-+..+-+|.++    +.+.+|+..          ...++..+-.|. +|.++++.++|+|+||++.|      ..++||
T Consensus       261 P~NaVih~Ghsn----GtVSlWSP~----------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D------r~~kIW  320 (545)
T KOG1272|consen  261 PYNAVIHLGHSN----GTVSLWSPN----------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD------RKVKIW  320 (545)
T ss_pred             CccceEEEcCCC----ceEEecCCC----------CcchHHHHHhcCCCcceEEECCCCcEEeecccc------cceeEe
Confidence            988777766443    566777642          234444555565 99999999999999999998      999999


Q ss_pred             EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                      |++.-..+     .++.. .-....++||..|-
T Consensus       321 DlR~~~ql-----~t~~t-p~~a~~ls~Sqkgl  347 (545)
T KOG1272|consen  321 DLRNFYQL-----HTYRT-PHPASNLSLSQKGL  347 (545)
T ss_pred             eecccccc-----ceeec-CCCccccccccccc
Confidence            99974322     22222 23456778886653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.52  E-value=6.6e-13  Score=111.67  Aligned_cols=187  Identities=15%  Similarity=0.218  Sum_probs=136.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ce---eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEEC-CCCc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~---~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~  286 (444)
                      .+|+|.+|++|+..++.+-... .|.||...... -.   .+..|...|+.++|+|..+.|++++.|..-++|.. ..++
T Consensus        11 ~pitchAwn~drt~iAv~~~~~-evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNH-EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             CceeeeeecCCCceEEeccCCc-eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            6899999999999999998887 99999988775 22   35568899999999999999999999999999998 4444


Q ss_pred             e---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCC
Q 013347          287 S---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASG  361 (444)
Q Consensus       287 ~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg  361 (444)
                      -   ..+..++...+++.|+|.++.++++++. ..+-++.+....          ..-.-+.+ +.+. .|.+++|+|++
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~EN----------dWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQEN----------DWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEeccc----------ceehhhhhCCccccceeeeeccCCc
Confidence            3   3355788999999999999999987543 444444443211          01000111 1122 69999999999


Q ss_pred             CEEEEEecCCCccccceEEEEEcC-----CCC--------eEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDAR-----RTP--------LISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~-----~~~--------~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      -+|++|+.|      +..|||..-     .++        +....++..+....+.+..+.|+|+|.-
T Consensus       159 VLlaaGs~D------~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~  220 (361)
T KOG1523|consen  159 VLLAAGSTD------GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR  220 (361)
T ss_pred             ceecccccC------cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence            999999999      899999642     111        1112223334345677899999999875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.51  E-value=1.5e-10  Score=103.83  Aligned_cols=273  Identities=15%  Similarity=0.132  Sum_probs=155.9

Q ss_pred             CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcEEEEecCCCCCcceeecccccccc
Q 013347          121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPSYPGNAASVRSGAASFLG  190 (444)
Q Consensus       121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~  190 (444)
                      ++|.+.|..+ .+....+..+....  .+ ++||++.++++..          ++.|.+||..+.+....+..+...   
T Consensus        27 ~~v~ViD~~~-~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p---   99 (352)
T TIGR02658        27 TQVYTIDGEA-GRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP---   99 (352)
T ss_pred             ceEEEEECCC-CEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc---
Confidence            8899999987 55555554444333  34 9999988887776          489999999976665555443100   


Q ss_pred             ccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE
Q 013347          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF  269 (444)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  269 (444)
                                      +.........++++|||++|+....+ ...|.+.|+.+++......-.+...-...+++.. + 
T Consensus       100 ----------------~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~-~-  161 (352)
T TIGR02658       100 ----------------RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTF-F-  161 (352)
T ss_pred             ----------------hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCcc-E-
Confidence                            00001344578999999999987744 3499999999988776444333322222322221 1 


Q ss_pred             EEecCCcEEEEECCC-Ccee----cc-ccCCCce-eEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347          270 AAKFDGTFYLWETNT-WTSE----PW-SSTSGFV-TGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       270 ~~~~d~~v~iwd~~~-~~~~----~~-~~~~~~v-~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +-+.||......+.+ ++..    .+ ......+ ....|.+ +|++++++..  +.+..+++.......        ..
T Consensus       162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~--------~~  231 (352)
T TIGR02658       162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKF--------LP  231 (352)
T ss_pred             EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCccee--------cc
Confidence            122344333322221 1110    11 0000000 1114455 8888887755  788888864321111        01


Q ss_pred             cccccc------c--CCceeEEEECCCCCEEEEEecCCC----ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCccee
Q 013347          342 DIVSLT------G--SQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  409 (444)
Q Consensus       342 ~~~~~~------~--~~~v~~~~~spdg~~l~~~~~d~~----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~  409 (444)
                      .+..+.      +  ...+.-++++|+|+.+++......    ....+.|.++|.++++.+..     +.. +..+..++
T Consensus       232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-----i~v-G~~~~~ia  305 (352)
T TIGR02658       232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-----IEL-GHEIDSIN  305 (352)
T ss_pred             eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE-----EeC-CCceeeEE
Confidence            111111      0  013444999999999988543210    00115899999999887732     331 45788999


Q ss_pred             eeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          410 FSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       410 ~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +||||+..   +......+|.|.+++..
T Consensus       306 vS~Dgkp~---lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       306 VSQDAKPL---LYALSTGDKTLYIFDAE  330 (352)
T ss_pred             ECCCCCeE---EEEeCCCCCcEEEEECc
Confidence            99999930   23334467888887753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.50  E-value=2.3e-12  Score=109.42  Aligned_cols=266  Identities=13%  Similarity=0.173  Sum_probs=166.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC-ce--eEEecCC------------CCCeEEEEEeeCCC--eEEEEec
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DA--CILTSDS------------QRDVKVLEWRPNGG--RSLSVGC  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~--~~~~~~~------------~~~v~~l~~s~~~~--~ll~~~~  163 (444)
                      -|.++.|..+|.+||+|..+|.|.++.-....+ ..  ......|            ...|..+.|.++++  .++.++.
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN  106 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN  106 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence            388999999999999999999999997654322 11  1111122            35788899988754  5778888


Q ss_pred             CCcEEEEecCCCCCcce----eecccccccccccc---CC-CC--ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC
Q 013347          164 KGGICIWAPSYPGNAAS----VRSGAASFLGALSR---GP-GT--RWTLVDFLRSQNGEQITALSWGPDGRYLASASYES  233 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~---~~-~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  233 (444)
                      |.+|++|.+...+....    ...+.......+..   .+ +.  ...+.+.+...|.-.|.++.++.|+..++++..- 
T Consensus       107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL-  185 (433)
T KOG1354|consen  107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL-  185 (433)
T ss_pred             CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce-
Confidence            99999999874432220    00110011111100   00 00  0123334443344679999999999998876543 


Q ss_pred             CeEEEEEcCCCC-ce---eeecC-----CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-----eccc-------
Q 013347          234 SSFTIWDVAQGL-GT---PIRRG-----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----EPWS-------  291 (444)
Q Consensus       234 ~~i~iwd~~~~~-~~---~~~~~-----~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-----~~~~-------  291 (444)
                       .|.+|+++-.. ..   -+.++     ..-|++..|+|. .+.|+-.+..|+|++-|++....     +.+.       
T Consensus       186 -RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~  264 (433)
T KOG1354|consen  186 -RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS  264 (433)
T ss_pred             -eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence             79999987432 21   22222     245788999995 56677788899999999984322     1111       


Q ss_pred             -----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-------------C---
Q 013347          292 -----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-------------Q---  350 (444)
Q Consensus       292 -----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---  350 (444)
                           .--..|..+.|+++|+++++-.-  .++..|++..            ..+++.+.+-|             .   
T Consensus       265 rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nm------------e~~pv~t~~vh~~lr~kLc~lYEnD~If  330 (433)
T KOG1354|consen  265 RSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNM------------EAKPVETYPVHEYLRSKLCSLYENDAIF  330 (433)
T ss_pred             hhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccc------------cCCcceEEeehHhHHHHHHHHhhccchh
Confidence                 12246788999999999997532  2333333311            22223332222             1   


Q ss_pred             ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      .-..++|+-++.++++|+..      +.+++|++..|.
T Consensus       331 dKFec~~sg~~~~v~TGsy~------n~frvf~~~~gs  362 (433)
T KOG1354|consen  331 DKFECSWSGNDSYVMTGSYN------NVFRVFNLARGS  362 (433)
T ss_pred             heeEEEEcCCcceEeccccc------ceEEEecCCCCc
Confidence            23568899999999999988      899999965443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.49  E-value=9.3e-13  Score=107.84  Aligned_cols=172  Identities=15%  Similarity=0.215  Sum_probs=126.6

Q ss_pred             ccCCCCccCccccceEEEEEec-CCC--eEEEEECCCeEEEEEccCCCCce--------eEEecCCCCCeEEEEEeeCCC
Q 013347           88 LLHPDHVHLLPEVDLQGVSWHQ-HKH--IVAFISGSTQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGG  156 (444)
Q Consensus        88 ~~~~~~~~~~~~~~v~~~~~sp-~g~--~la~~~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~~~  156 (444)
                      ...+++...-....+.|..+.. ++.  +++.|-.+|.+.+||+.+..+..        ..-...|..+|.++.+.+.-.
T Consensus       139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~  218 (323)
T KOG0322|consen  139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD  218 (323)
T ss_pred             eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence            3444555555556788887654 333  34556689999999999731111        111136899999999987656


Q ss_pred             eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeE
Q 013347          157 RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSF  236 (444)
Q Consensus       157 ~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i  236 (444)
                      +=+.++.+..+..|+++.......+..                     ...-. ...|..+.+-||++.+|+++.|+ .|
T Consensus       219 rGisgga~dkl~~~Sl~~s~gslq~~~---------------------e~~lk-npGv~gvrIRpD~KIlATAGWD~-Ri  275 (323)
T KOG0322|consen  219 RGISGGADDKLVMYSLNHSTGSLQIRK---------------------EITLK-NPGVSGVRIRPDGKILATAGWDH-RI  275 (323)
T ss_pred             CCcCCCccccceeeeeccccCcccccc---------------------eEEec-CCCccceEEccCCcEEeecccCC-cE
Confidence            666777788899999884422222111                     11111 25788999999999999999998 99


Q ss_pred             EEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEEC
Q 013347          237 TIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET  282 (444)
Q Consensus       237 ~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  282 (444)
                      +||..++..... +..|...|.+++|+|+...+++++.|++|.+|++
T Consensus       276 RVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  276 RVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999988776 5568899999999999999999999999999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=8.4e-12  Score=107.87  Aligned_cols=242  Identities=14%  Similarity=0.139  Sum_probs=161.7

Q ss_pred             ceEEEEEecCCC--eEEEEECCCeEEEEEccCCCCceeE----EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347          101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDACI----LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp~g~--~la~~~~dg~v~iw~~~~~~~~~~~----~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~  174 (444)
                      .|..++|.-+++  .|.-.+.+-.+..+.+...+.....    .......+|..++...  ..|++|-.+|.+++|....
T Consensus        57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEeccC
Confidence            477777776653  3443446666666666653211111    1124456676666543  5788898999999999884


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeC--CCeEEEEEcCCCCceeeec
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYE--SSSFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d--~~~i~iwd~~~~~~~~~~~  251 (444)
                      +..-..                     ....+..+  ..+..+.-++...++ ++|+..  . .+.+||+++.+.  +..
T Consensus       135 ~d~hss---------------------~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~~n-~lkiwdle~~~q--iw~  188 (412)
T KOG3881|consen  135 GDLHSS---------------------KLIKLATG--PGLYDVRQTDTDPYIVATGGKENIN-ELKIWDLEQSKQ--IWS  188 (412)
T ss_pred             Cccccc---------------------cceeeecC--CceeeeccCCCCCceEecCchhccc-ceeeeeccccee--eee
Confidence            331100                     01112222  466777777755555 557766  5 899999998732  222


Q ss_pred             CC------------CCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347          252 GF------------GGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       252 ~~------------~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      .+            -.++++.|-+.  ...|++++.-+.|++||.+.+..  ..+......++++...|.++.|+++.. 
T Consensus       189 aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-  267 (412)
T KOG3881|consen  189 AKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-  267 (412)
T ss_pred             ccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-
Confidence            11            23567888887  78899999999999999997654  344456778999999999999987643 


Q ss_pred             CceEEEEEeecCCCCcCCCcCCCCcccc-cccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          316 SLTLGSIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .+.+..++...             ...+ ..+.+-. .|+++..+|.+++||+++-|      ..+||+|+++.+++
T Consensus       268 ~g~l~~FD~r~-------------~kl~g~~~kg~tGsirsih~hp~~~~las~GLD------RyvRIhD~ktrkll  325 (412)
T KOG3881|consen  268 KGQLAKFDLRG-------------GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD------RYVRIHDIKTRKLL  325 (412)
T ss_pred             cchhheecccC-------------ceeeccccCCccCCcceEEEcCCCceEEeeccc------eeEEEeecccchhh
Confidence            35556666532             2222 2245555 79999999999999999998      99999999997665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.47  E-value=2.2e-13  Score=128.05  Aligned_cols=235  Identities=15%  Similarity=0.145  Sum_probs=170.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|+.++.+.+..++|+++.|..|++|.+.+ +....++ .+|++.|++++|+|-.    +++.||++++||.+...... 
T Consensus       234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y-  306 (1113)
T KOG0644|consen  234 DITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIY-  306 (1113)
T ss_pred             ccchhccchhhhhhhhcccCceEEEEecCC-CchHHHH-hccccceeeeccCccc----cCCCCCceEecccccccccc-
Confidence            699999999999999999999999999997 5555555 5999999999999973    66778999999987111100 


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                      +..                     .+......-+.++.|-..+..+++++.|+ .-..|.+......     ...+.-+.
T Consensus       307 ~pr---------------------p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~-ea~n~e~~~l~~~-----~~~lif~t  359 (1113)
T KOG0644|consen  307 VPR---------------------PLKFTEKDLVDSILFENNGDRFLTGSRDG-EARNHEFEQLAWR-----SNLLIFVT  359 (1113)
T ss_pred             CCC---------------------CCCcccccceeeeeccccccccccccCCc-ccccchhhHhhhh-----ccceEEEe
Confidence            000                     01111125677788888888999999998 8887776532211     11111122


Q ss_pred             EecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347          261 WSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       261 ~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      .+.+ ..+.+++-.+-.+.+|++.++.. ..+.+|...+..+.++|-+..++...+.++...+|++|...          
T Consensus       360 ~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~----------  429 (1113)
T KOG0644|consen  360 RSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI----------  429 (1113)
T ss_pred             ccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC----------
Confidence            2222 24556777788899999999987 56779999999999999999888777778888899988532          


Q ss_pred             CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                        +....+.+|..+..-.||+||+.++....-      |.++|.....+
T Consensus       430 --pik~y~~gh~kl~d~kFSqdgts~~lsd~h------gql~i~g~gqs  470 (1113)
T KOG0644|consen  430 --PIKHYFIGHGKLVDGKFSQDGTSIALSDDH------GQLYILGTGQS  470 (1113)
T ss_pred             --cceeeecccceeeccccCCCCceEecCCCC------CceEEeccCCC
Confidence              112233567688889999999998876555      88888876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.46  E-value=5.4e-12  Score=113.29  Aligned_cols=218  Identities=16%  Similarity=0.200  Sum_probs=139.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCC----ceeEEecCCCCCeEEEEE-----eeCCCeEEEEecCCcEEEEec
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK----DACILTSDSQRDVKVLEW-----RPNGGRSLSVGCKGGICIWAP  172 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~----~~~~~~~~~~~~v~~l~~-----s~~~~~ll~~~~dg~v~iw~~  172 (444)
                      ++...++-.|++|+.. ....+.+|+......    ......  .....++-+|     .|++-.++++-.-|.|++.|.
T Consensus       126 ~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y--~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREY--KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             eeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcc--cCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence            5566666678888874 344678888873211    111111  1223334444     355556888888899998887


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCC-------
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQG-------  244 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~-------  244 (444)
                      .. .....+...                     -+......|+|+.|-|.+. .++++-.+| .+.+||....       
T Consensus       203 ~~-~~~sklfne---------------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sG-nlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  203 IN-FEVSKLFNE---------------------ERLINKSSVTCIKWVPGSDSLFLVAHASG-NLYLYDKEIVCGATAPS  259 (636)
T ss_pred             hh-hHHHHhhhh---------------------cccccccceEEEEEEeCCCceEEEEEecC-ceEEeeccccccCCCCc
Confidence            63 111111100                     0111136899999999544 455556676 9999976421       


Q ss_pred             -------C---------------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEE
Q 013347          245 -------L---------------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGAT  301 (444)
Q Consensus       245 -------~---------------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~  301 (444)
                             .               ..+.....+.|..++|+|||++||+.+.||.+||||..+.++. .+...-+...|++
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc  339 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC  339 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence                   0               0011123457889999999999999999999999999987763 2334556789999


Q ss_pred             ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECC
Q 013347          302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA  359 (444)
Q Consensus       302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp  359 (444)
                      |||||++|++++.+ ..+-+|.+.             ..+.+..-.+|. +|..++|.|
T Consensus       340 WSPDGKyIvtGGED-DLVtVwSf~-------------erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  340 WSPDGKYIVTGGED-DLVTVWSFE-------------ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EcCCccEEEecCCc-ceEEEEEec-------------cceEEEeccccccceeeEeecc
Confidence            99999999987544 344555542             334455556787 999999985

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2.6e-11  Score=109.81  Aligned_cols=268  Identities=13%  Similarity=0.115  Sum_probs=173.4

Q ss_pred             ceEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecC-CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ..+.+..+|||+++ |+|.....|++||+..-   ...+... ....|.-.-.+.|-...+.-..|.+|.+-..- + .-
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G-~h  127 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G-RH  127 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-C-ee
Confidence            36789999999986 56778999999999852   2222212 23344444455555556666667766653322 0 00


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~  257 (444)
                      .                         .++-  ...-.+++++.-..-|++++... .|+-++++.|.... +....+.++
T Consensus       128 y-------------------------~~RI--P~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN  179 (703)
T KOG2321|consen  128 Y-------------------------RTRI--PKFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELN  179 (703)
T ss_pred             e-------------------------eeec--CcCCccccccCCCccEEEeecCc-ceEEEEccccccccccccccccce
Confidence            0                         0000  12234566664333344444444 79999999987665 444458899


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCcee-c------cccCCC-----ceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P------WSSTSG-----FVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~------~~~~~~-----~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ++..++...+|++|+.+|.|..||.+..... .      +..|.+     .|+++.|+.+|-.+++|.+. +.+.++++.
T Consensus       180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~-G~v~iyDLR  258 (703)
T KOG2321|consen  180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST-GSVLIYDLR  258 (703)
T ss_pred             eeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC-CcEEEEEcc
Confidence            9999999999999999999999999876541 1      222333     39999999999999987654 667777765


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC---ceeEEEECCC--CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spd--g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                      ...            +.+  .+.|.   +|..+.|.+.  +..+++.  |.     ..++|||-.+|+..     ..+ .
T Consensus       259 a~~------------pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk-----~~~kiWd~~~Gk~~-----asi-E  311 (703)
T KOG2321|consen  259 ASK------------PLL--VKDHGYELPIKKLDWQDTDQQNKVVSM--DK-----RILKIWDECTGKPM-----ASI-E  311 (703)
T ss_pred             cCC------------cee--ecccCCccceeeecccccCCCceEEec--ch-----HHhhhcccccCCce-----eec-c
Confidence            421            111  22333   8999999876  3456554  42     78999999988765     122 2


Q ss_pred             CCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          401 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       401 ~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ....+..+++-|++-     ++..+.+++.+..|
T Consensus       312 pt~~lND~C~~p~sG-----m~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  312 PTSDLNDFCFVPGSG-----MFFTANESSKMHTY  340 (703)
T ss_pred             ccCCcCceeeecCCc-----eEEEecCCCcceeE
Confidence            344588888888754     35666777776654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=9.1e-12  Score=115.56  Aligned_cols=269  Identities=15%  Similarity=0.222  Sum_probs=177.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCC---Cce----------eEEecCCCCCeEEEEEeeCCCeEEEEecCCcE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---KDA----------CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI  167 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---~~~----------~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v  167 (444)
                      ...|++|+....+||+|+.||.++|..+.+..   +..          .....+|...|.-+.|+.+.++|-++..+|.|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI   95 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence            46899999999999999999999999887641   110          01124899999999999986667666668999


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      .+|-+-.+.-...+..                        ....+-|.+++|+.||..++....|| .|.+=.++.++.-
T Consensus        96 iVWmlykgsW~EEMiN------------------------nRnKSvV~SmsWn~dG~kIcIvYeDG-avIVGsvdGNRIw  150 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMIN------------------------NRNKSVVVSMSWNLDGTKICIVYEDG-AVIVGSVDGNRIW  150 (1189)
T ss_pred             EEEeeecccHHHHHhh------------------------CcCccEEEEEEEcCCCcEEEEEEccC-CEEEEeeccceec
Confidence            9999873332222111                        11236789999999999999999998 8877766654321


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc------------cCCCceeEEEEC--------CCCC
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------------STSGFVTGATWD--------PEGR  307 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~------------~~~~~v~~~~~s--------p~g~  307 (444)
                      -..-.......+.|++|.+.++.+-.+|.+.+||.+..-..++.            .....+..+.|.        |+..
T Consensus       151 gKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP  230 (1189)
T KOG2041|consen  151 GKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP  230 (1189)
T ss_pred             chhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC
Confidence            11101123447899999998888888999999998754321111            122234555553        4667


Q ss_pred             EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc---cccceEEEEEc
Q 013347          308 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---IYKGLIAIYDA  384 (444)
Q Consensus       308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~---~~d~~i~vwd~  384 (444)
                      .++++..+ ++...++-.+            +..++..-++ -.+..+.|+++|..||+++.+.+.   +.-+.|.+|..
T Consensus       231 ~lavcy~n-Gr~QiMR~eN------------D~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp  296 (1189)
T KOG2041|consen  231 RLAVCYAN-GRMQIMRSEN------------DPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP  296 (1189)
T ss_pred             EEEEEEcC-ceehhhhhcC------------CCCCeEEecc-cEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence            77776554 4444444222            1111111111 268889999999999999987542   11145666654


Q ss_pred             CCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          385 RRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                      - |++     .++++..+..|++++|--.|
T Consensus       297 ~-G~i-----~gtlkvpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  297 Y-GHI-----VGTLKVPGSCITGLSWEGTG  320 (1189)
T ss_pred             c-hhh-----eEEEecCCceeeeeEEcCCc
Confidence            3 233     35677778889999886544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.42  E-value=2.5e-10  Score=101.33  Aligned_cols=171  Identities=15%  Similarity=0.252  Sum_probs=131.4

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC-cEEEEecCCCCCcceeecccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAASF  188 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~  188 (444)
                      +|.+++..| .|...|.+... +   ..+..+|...|.-..+.-++..++.+..|| .+-|+|.+....           
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~-~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-----------  394 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWD-G---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-----------  394 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCC-C---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-----------
Confidence            677888775 45666766553 1   223347888899999988888888888887 899999983321           


Q ss_pred             ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCe
Q 013347          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDY  267 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~  267 (444)
                                     ..+... -+.|.++..+|+|+.++.+.... .+.+.|+.++....+... .+-|+.+.|+|++++
T Consensus       395 ---------------kr~e~~-lg~I~av~vs~dGK~~vvaNdr~-el~vididngnv~~idkS~~~lItdf~~~~nsr~  457 (668)
T COG4946         395 ---------------KRIEKD-LGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW  457 (668)
T ss_pred             ---------------EEeeCC-ccceEEEEEcCCCcEEEEEcCce-EEEEEEecCCCeeEecccccceeEEEEEcCCcee
Confidence                           122222 27899999999999999887776 999999999987766554 467999999999999


Q ss_pred             EEEEecCC----cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE
Q 013347          268 FFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       268 l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  313 (444)
                      +|-+--+|    .|+++|+.+++........+.-.+.+|.|++++|..-+
T Consensus       458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            99876655    79999999999866655555567889999999987644

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.6e-10  Score=104.70  Aligned_cols=260  Identities=15%  Similarity=0.180  Sum_probs=164.3

Q ss_pred             ceEEEEEecCCCeEEEE-----EC-----CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347          101 DLQGVSWHQHKHIVAFI-----SG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~-----~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw  170 (444)
                      .++++.|||.|.+|.+-     ..     .-.+.+|++++ +.....+....... +++.|+.| ..+++--..+.+++|
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-~~~~s~~q~k~Q~~-W~~qfs~d-Esl~arlv~nev~f~  151 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-GVQRSQIQKKMQNG-WVPQFSID-ESLAARLVSNEVQFY  151 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeecc-ceehhheehhhhcC-cccccccc-hhhhhhhhcceEEEE
Confidence            68899999999998872     12     24577999998 54444444344444 78999999 666666667899999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC--eEEE-----EeeCCCeEEEEEcCC
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--YLAS-----ASYESSSFTIWDVAQ  243 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~-----~~~d~~~i~iwd~~~  243 (444)
                      ++.....+                        ...+.   ...++.+.+||.+.  .+|+     .+.-. .|+||....
T Consensus       152 ~~~~f~~~------------------------~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa-~vri~~~~~  203 (566)
T KOG2315|consen  152 DLGSFKTI------------------------QHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPA-SVRIYKYPE  203 (566)
T ss_pred             ecCCccce------------------------eeeee---ccceeeEEecCCCCCceEEEEccCCCCCCc-EEEEecccc
Confidence            98742111                        11222   25788999998643  3332     13344 899998773


Q ss_pred             CCceeeec----CCCCeEEEEEecCCCeE-EEEe--cC---------CcEEEEECCCCceeccccCCCceeEEEECCCCC
Q 013347          244 GLGTPIRR----GFGGLSILKWSPTGDYF-FAAK--FD---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGR  307 (444)
Q Consensus       244 ~~~~~~~~----~~~~v~~~~~sp~~~~l-~~~~--~d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~  307 (444)
                      ........    ....-..+.|++-|.-| +.++  -|         .+++++++++.....-....++|.++.|+|+++
T Consensus       204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGR  283 (566)
T ss_pred             ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCC
Confidence            32222111    12334467898877643 3222  23         368888888444433335578999999999998


Q ss_pred             EEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          308 MILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       308 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .+++..+- -..+-++++              ...++..+. ..+=+.+-|+|.|++|+.++-++-.   |.+-|||+.+
T Consensus       284 EF~VvyGfMPAkvtifnl--------------r~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~---G~mEvwDv~n  345 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNL--------------RGKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLP---GDMEVWDVPN  345 (566)
T ss_pred             EEEEEEecccceEEEEcC--------------CCCEeEeCC-CCCccceEECCCCCEEEEeecCCCC---CceEEEeccc
Confidence            87754321 112222222              222222221 1145788999999999999887643   9999999998


Q ss_pred             CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          387 TPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      .+.+     ..+.  ...-+-+.|+|||+|
T Consensus       346 ~K~i-----~~~~--a~~tt~~eW~PdGe~  368 (566)
T KOG2315|consen  346 RKLI-----AKFK--AANTTVFEWSPDGEY  368 (566)
T ss_pred             hhhc-----cccc--cCCceEEEEcCCCcE
Confidence            6665     2222  233456799999998

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=6.9e-10  Score=103.84  Aligned_cols=182  Identities=11%  Similarity=0.090  Sum_probs=121.5

Q ss_pred             ceEEEEEccCCCe-EEEEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE-ec--CCcEEEEECCCCc
Q 013347          213 QITALSWGPDGRY-LASASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KF--DGTFYLWETNTWT  286 (444)
Q Consensus       213 ~v~~~~~sp~~~~-l~~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~--d~~v~iwd~~~~~  286 (444)
                      ......|+|||+. ++..+.++  ..|.++|+.+++...+....+......|+|||+.++.. +.  +..|.++|+.+++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            5678999999985 66555442  37999999999888777767777788999999887543 33  3478888998888


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL  364 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  364 (444)
                      ...+..+........|+|||+.|++..+..+  .++.+++.              ....+.+..... ....|||||++|
T Consensus       269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------------~g~~~rlt~~g~-~~~~~SPDG~~I  333 (419)
T PRK04043        269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN--------------SGSVEQVVFHGK-NNSSVSTYKNYI  333 (419)
T ss_pred             EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC--------------CCCeEeCccCCC-cCceECCCCCEE
Confidence            7766655544456789999999988765443  34444432              112222221111 124899999999


Q ss_pred             EEEecCCCccc---cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          365 AVSYKGGDDIY---KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       365 ~~~~~d~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      +..+...+..+   ...|.+.|+.++....      +... ......+|||||+.
T Consensus       334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~------LT~~-~~~~~p~~SPDG~~  381 (419)
T PRK04043        334 VYSSRETNNEFGKNTFNLYLISTNSDYIRR------LTAN-GVNQFPRFSSDGGS  381 (419)
T ss_pred             EEEEcCCCcccCCCCcEEEEEECCCCCeEE------CCCC-CCcCCeEECCCCCE
Confidence            88776532111   1478888998876532      2221 12336899999996

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.37  E-value=1.8e-10  Score=104.97  Aligned_cols=189  Identities=11%  Similarity=0.071  Sum_probs=137.9

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCCCceeEEe-c-CCCCCeEEEEEe------e-------------CCCeEE-EEecCCc
Q 013347          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILT-S-DSQRDVKVLEWR------P-------------NGGRSL-SVGCKGG  166 (444)
Q Consensus       109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~-~-~~~~~v~~l~~s------~-------------~~~~ll-~~~~dg~  166 (444)
                      |-+.++|....||.++||+...+ +....+. . .-.+..++..|.      |             .+..++ -+...|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~-~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKN-QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCc-eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            45678999999999999999984 3332222 1 224555666663      1             112233 3334588


Q ss_pred             EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc
Q 013347          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG  246 (444)
Q Consensus       167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~  246 (444)
                      |.+|++..++-...+.+                       ..| .+.|.++.++.+-..|.+++.|. .+..|+......
T Consensus        82 v~~ys~~~g~it~~~st-----------------------~~h-~~~v~~~~~~~~~~ciyS~~ad~-~v~~~~~~~~~~  136 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLST-----------------------DKH-YGNVNEILDAQRLGCIYSVGADL-KVVYILEKEKVI  136 (541)
T ss_pred             EEEEEecCCeEEEEEec-----------------------CCC-CCcceeeecccccCceEecCCce-eEEEEeccccee
Confidence            99999874333222222                       234 58999999999999999999998 999999998877


Q ss_pred             eeeec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCC-----CCEEEEEEcCCceE
Q 013347          247 TPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-----GRMILLAFAGSLTL  319 (444)
Q Consensus       247 ~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~-----g~~l~~~~~~~~~~  319 (444)
                      ..+.. .+..+.+++.+|||..+++++  +.|++||+++++. +.+.+|.+.|++++|-.+     |.+++++......+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i  214 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI  214 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence            76544 467789999999999998887  6899999999998 779999999999999877     78888665544444


Q ss_pred             EEEEee
Q 013347          320 GSIHFA  325 (444)
Q Consensus       320 ~~~~~~  325 (444)
                      ..|.+.
T Consensus       215 ~~w~v~  220 (541)
T KOG4547|consen  215 TVWVVE  220 (541)
T ss_pred             eEEEEE
Confidence            455443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.37  E-value=3.7e-11  Score=102.29  Aligned_cols=257  Identities=12%  Similarity=0.174  Sum_probs=160.8

Q ss_pred             EEcceeeeeccccchhhhcccccccceeeccCCCCCCcccCCCCCcchhhccccccCcccccccccccccccccccCCCC
Q 013347           14 EINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDH   93 (444)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~   93 (444)
                      .-+-|++++.+++-.+...+.|+.+|+|...   +......              .........+.|..+      |.-.
T Consensus        22 vteadiis~vef~~~Ge~LatGdkgGRVv~f---~r~~~~~--------------~ey~~~t~fqshepE------FDYL   78 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGERLATGDKGGRVVLF---EREKLYK--------------GEYNFQTEFQSHEPE------FDYL   78 (433)
T ss_pred             echhcceeeEEeecccceEeecCCCCeEEEe---ecccccc--------------cceeeeeeeeccCcc------cchh
Confidence            4567899999999999999999999998532   2211111              011222334444332      1112


Q ss_pred             ccCccccceEEEEEecCCC--eEEEEECCCeEEEEEccCCCCce----------------------------------eE
Q 013347           94 VHLLPEVDLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDA----------------------------------CI  137 (444)
Q Consensus        94 ~~~~~~~~v~~~~~sp~g~--~la~~~~dg~v~iw~~~~~~~~~----------------------------------~~  137 (444)
                      ..+-.+..|..+.|.++++  .+...+.|.+|++|.+...+...                                  ++
T Consensus        79 kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv  158 (433)
T KOG1354|consen   79 KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV  158 (433)
T ss_pred             hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence            2222244688999999774  45556799999999987542211                                  12


Q ss_pred             EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      +...|.--|.+++++.| ...+.++.|=.|.+|+++.......+...+-                 ..+..- ..-|++.
T Consensus       159 ~aNaHtyhiNSIS~NsD-~Et~lSADdLRINLWnlei~d~sFnIVDIKP-----------------~nmEeL-teVITsa  219 (433)
T KOG1354|consen  159 YANAHTYHINSISVNSD-KETFLSADDLRINLWNLEIIDQSFNIVDIKP-----------------ANMEEL-TEVITSA  219 (433)
T ss_pred             ccccceeEeeeeeecCc-cceEeeccceeeeeccccccCCceeEEEccc-----------------cCHHHH-HHHHhhh
Confidence            23468888999999999 4555666788999999984443332222100                 000111 1357888


Q ss_pred             EEcc-CCCeEEEEeeCCCeEEEEEcCCCCc----eeeec-------------CCCCeEEEEEecCCCeEEEEecCCcEEE
Q 013347          218 SWGP-DGRYLASASYESSSFTIWDVAQGLG----TPIRR-------------GFGGLSILKWSPTGDYFFAAKFDGTFYL  279 (444)
Q Consensus       218 ~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~-------------~~~~v~~~~~sp~~~~l~~~~~d~~v~i  279 (444)
                      .|+| ..+.++..+..| +|++-|++....    ..+..             --..|..+.|+++|+++++-.. -+|++
T Consensus       220 EFhp~~cn~f~YSSSKG-tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~  297 (433)
T KOG1354|consen  220 EFHPHHCNVFVYSSSKG-TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKL  297 (433)
T ss_pred             ccCHhHccEEEEecCCC-cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEE
Confidence            9999 456677777787 999999985311    01111             1146889999999999987543 68999


Q ss_pred             EECCCC-c-eeccccCC------------C---ceeEEEECCCCCEEEEEEc
Q 013347          280 WETNTW-T-SEPWSSTS------------G---FVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       280 wd~~~~-~-~~~~~~~~------------~---~v~~~~~sp~g~~l~~~~~  314 (444)
                      ||+.-. + ....+-|.            .   .-..++|+-++.++++|+-
T Consensus       298 wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy  349 (433)
T KOG1354|consen  298 WDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY  349 (433)
T ss_pred             EeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc
Confidence            998432 2 23333221            1   2256789999889887754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.36  E-value=1.4e-10  Score=98.82  Aligned_cols=215  Identities=14%  Similarity=0.179  Sum_probs=137.1

Q ss_pred             CcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEE
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVL  149 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l  149 (444)
                      ...+...++||.+.                  |++...-|-..-+++.+.|.+++||--.+.++.-..+.+....+++++
T Consensus        13 kp~ll~~~eG~~d~------------------vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~   74 (404)
T KOG1409|consen   13 KPELLSKIEGSQDD------------------VNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAM   74 (404)
T ss_pred             chhhhhhhcCchhh------------------hhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEe
Confidence            34455667788766                  555555566666788999999999987765555555555678899999


Q ss_pred             EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347          150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA  229 (444)
Q Consensus       150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  229 (444)
                      .+.++...|+++-..|++.-+.+...-....                     ..+....|. ..+..+.|+-...++++.
T Consensus        75 ~y~~e~~~L~vg~~ngtvtefs~sedfnkm~---------------------~~r~~~~h~-~~v~~~if~~~~e~V~s~  132 (404)
T KOG1409|consen   75 EYVSESRRLYVGQDNGTVTEFALSEDFNKMT---------------------FLKDYLAHQ-ARVSAIVFSLTHEWVLST  132 (404)
T ss_pred             eeeccceEEEEEEecceEEEEEhhhhhhhcc---------------------hhhhhhhhh-cceeeEEecCCceeEEEe
Confidence            9999966666666669998887652111000                     111111221 233333333333333333


Q ss_pred             eeCC--------------------------------------CeEEEEEcCCCCc---eeeecCCCCeEEEEEecCCCeE
Q 013347          230 SYES--------------------------------------SSFTIWDVAQGLG---TPIRRGFGGLSILKWSPTGDYF  268 (444)
Q Consensus       230 ~~d~--------------------------------------~~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~~~~l  268 (444)
                      +.|.                                      +.|.+-.+....+   ....+|.+.+.+++|.|..+.|
T Consensus       133 ~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L  212 (404)
T KOG1409|consen  133 GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL  212 (404)
T ss_pred             ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence            2222                                      1333333332222   2345678899999999999999


Q ss_pred             EEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          269 FAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       269 ~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ++|..|..+.+||+...+.  ..+.+|...|..+...+--+.+. +++.++.+-.|++.
T Consensus       213 fSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~-S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  213 FSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLI-SCGEDGGIVVWNMN  270 (404)
T ss_pred             EeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeee-eccCCCeEEEEecc
Confidence            9999999999999976554  45668888898888877766666 44555666666643

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=5.1e-10  Score=101.24  Aligned_cols=291  Identities=13%  Similarity=0.155  Sum_probs=179.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----------CcEEE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----------GGICI  169 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----------g~v~i  169 (444)
                      .-+-+.|||-|.+|++-...| |.+|-=.+-.+ ...  ..|. .|.-+.|||+.++|++-+..           ..++|
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r-~~R--F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDR-IQR--FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHH-HHh--ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            356799999999999876554 67896543222 222  2454 58889999998888876631           57999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      ||+.++.....+..                      ++.. ...-.-+.||.|++++|.-..+  .|.||+..+-.....
T Consensus       287 WDI~tG~lkrsF~~----------------------~~~~-~~~WP~frWS~DdKy~Arm~~~--sisIyEtpsf~lld~  341 (698)
T KOG2314|consen  287 WDIATGLLKRSFPV----------------------IKSP-YLKWPIFRWSHDDKYFARMTGN--SISIYETPSFMLLDK  341 (698)
T ss_pred             EEccccchhcceec----------------------cCCC-ccccceEEeccCCceeEEeccc--eEEEEecCceeeecc
Confidence            99995544333222                      1111 1223457899999999987776  699999776332222


Q ss_pred             ec-CCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcC------C
Q 013347          250 RR-GFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAG------S  316 (444)
Q Consensus       250 ~~-~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~------~  316 (444)
                      .. .-..|....|+|.++.||-=..     -..+.+..+.+++..... -+.-.-..+-|-.+|.+|++-...      .
T Consensus       342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~  421 (698)
T KOG2314|consen  342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK  421 (698)
T ss_pred             cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence            22 1367889999999988864322     135666777666553221 222222346788888888763321      1


Q ss_pred             ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347          317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  396 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~  396 (444)
                      +....+.+....    .     ..-++..+.-...|...+|-|.|..+++.+.....   .++.+|.+++... ...++.
T Consensus       422 g~f~n~eIfrir----e-----KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k---~tvsfY~~e~~~~-~~~lVk  488 (698)
T KOG2314|consen  422 GQFSNLEIFRIR----E-----KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK---NTVSFYAVETNIK-KPSLVK  488 (698)
T ss_pred             ceEeeEEEEEee----c-----cCCCceeeecchheeeeeeccCCCeEEEEEccccc---cceeEEEeecCCC-chhhhh
Confidence            222333322110    0     11222233333378899999999988877655332   7899999885221 133333


Q ss_pred             eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      .+..  ...+.+.|||.|+|...+  +.....|.+.||++.|
T Consensus       489 ~~dk--~~~N~vfwsPkG~fvvva--~l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  489 ELDK--KFANTVFWSPKGRFVVVA--ALVSRRGDLEFYDTDY  526 (698)
T ss_pred             hhcc--cccceEEEcCCCcEEEEE--EecccccceEEEecch
Confidence            3332  446789999999994322  2223589999999987

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.33  E-value=4.4e-10  Score=110.60  Aligned_cols=263  Identities=11%  Similarity=0.042  Sum_probs=160.7

Q ss_pred             CCceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC
Q 013347          132 GKDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN  210 (444)
Q Consensus       132 ~~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (444)
                      |.....+ +.|...|..++.++.. ..+++++.||+|++|+...-....                  +..+...++... 
T Consensus      1038 G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------------~s~rS~ltys~~- 1097 (1431)
T KOG1240|consen 1038 GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------------GSARSELTYSPE- 1097 (1431)
T ss_pred             ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------------------ceeeeeEEEecc-
Confidence            3344433 5888889899888765 667777778999999987221110                  111222233322 


Q ss_pred             CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-------eeec--CCCCeEE-EEEec-CCC-eEEEEecCCcEE
Q 013347          211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------PIRR--GFGGLSI-LKWSP-TGD-YFFAAKFDGTFY  278 (444)
Q Consensus       211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-------~~~~--~~~~v~~-~~~sp-~~~-~l~~~~~d~~v~  278 (444)
                      ...+.++...+.+..+|+++.|| .|.+.++......       .+..  ..+.+.+ -++.. .+. .++.+...+.|.
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG-~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDG-SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCC-eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            36899999999999999999998 9999998763211       1111  1233333 33433 233 567788889999


Q ss_pred             EEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCcee
Q 013347          279 LWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIE  353 (444)
Q Consensus       279 iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~  353 (444)
                      .||++....   .+.....+.|++++.+|.+.+++.|.+. +.+-.|+++=             ..++....  .+.+|.
T Consensus      1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~-G~l~lWDLRF-------------~~~i~sw~~P~~~~i~ 1242 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR-GQLVLWDLRF-------------RVPILSWEHPARAPIR 1242 (1431)
T ss_pred             EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC-ceEEEEEeec-------------CceeecccCcccCCcc
Confidence            999987654   2333456789999999999999987554 4455555421             11222222  222677


Q ss_pred             EEEECCC---CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee--------eeC-------CC
Q 013347          354 KIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF--------SFH-------DK  415 (444)
Q Consensus       354 ~~~~spd---g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~--------spd-------g~  415 (444)
                      .+..+|-   ....++++..+.    +.|.+|++.+|.....-..    +  ..+..+.+        +|+       +-
T Consensus      1243 ~v~~~~~~~~~S~~vs~~~~~~----nevs~wn~~~g~~~~vl~~----s--~~~p~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSN----NEVSTWNMETGLRQTVLWA----S--DGAPILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred             eEEeeccCCCCceEEEecccCC----CceeeeecccCcceEEEEc----C--CCCcchhhhcccccCCCCCcccceeeec
Confidence            7776654   346665555222    7899999998754321111    1  11111111        111       11


Q ss_pred             CCCCceEEEEeccceeeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      -...+++..|-+|+.|+.|+...+
T Consensus      1313 ~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             ccCCceeeecCCccceeeccCCCc
Confidence            133457778889999999987654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.30  E-value=7.6e-09  Score=92.92  Aligned_cols=239  Identities=11%  Similarity=0.007  Sum_probs=141.5

Q ss_pred             EecCCCeEEEEEC----------CCeEEEEEccCCCCceeEEecCC------CCCeEEEEEeeCCCeEEEEec--CCcEE
Q 013347          107 WHQHKHIVAFISG----------STQVIVRDYEDSGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--KGGIC  168 (444)
Q Consensus       107 ~sp~g~~la~~~~----------dg~v~iw~~~~~~~~~~~~~~~~------~~~v~~l~~s~~~~~ll~~~~--dg~v~  168 (444)
                      +||||+.|+++..          +..|.+||..+ .+....+..+-      ......++++|||+.+++...  +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            9999998887655          78999999998 44443332211      223347889999888877663  59999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC--CCc
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ--GLG  246 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~--~~~  246 (444)
                      +.|+...+....+..+.                +...+..   ..-..+..+.||+.+.....+.|+...=...-  ...
T Consensus       132 VvD~~~~kvv~ei~vp~----------------~~~vy~t---~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~  192 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPD----------------CYHIFPT---ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED  192 (352)
T ss_pred             EEECCCCcEEEEEeCCC----------------CcEEEEe---cCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc
Confidence            99999666555554431                1111111   11112233345555443333222322111000  000


Q ss_pred             eeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCcee-----cc-c-------cCCCceeEEEECCCCCEEEEE
Q 013347          247 TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-----PW-S-------STSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       247 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~-----~~-~-------~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      ..+..  .+    .|.+ +|+++....+ |+|.+.|+.+.+..     .+ .       -..+...-++++|+++.+++.
T Consensus       193 ~~v~~--rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~  265 (352)
T TIGR02658       193 EYLIN--HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL  265 (352)
T ss_pred             ccccc--CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence            11111  12    4455 8888877766 99999996554321     11 1       022334559999999998875


Q ss_pred             Ec---------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCccccceEEEE
Q 013347          313 FA---------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       313 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vw  382 (444)
                      ..         ....++.++..             +.+.+..+.-...+..++++|||+ +|++....+     +.|.++
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~-------------t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsVi  327 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAK-------------TGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYIF  327 (352)
T ss_pred             ecCCccccccCCCCEEEEEECC-------------CCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEEE
Confidence            32         12456666642             344455555444789999999999 887776542     789999


Q ss_pred             EcCCCCeE
Q 013347          383 DARRTPLI  390 (444)
Q Consensus       383 d~~~~~~~  390 (444)
                      |..+++.+
T Consensus       328 D~~t~k~i  335 (352)
T TIGR02658       328 DAETGKEL  335 (352)
T ss_pred             ECcCCeEE
Confidence            99998776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.29  E-value=1.6e-09  Score=96.38  Aligned_cols=228  Identities=17%  Similarity=0.168  Sum_probs=154.9

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe---c---C---CCCCeEEEE-EeeCCCeEEEEecCCcEEEEec
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---S---D---SQRDVKVLE-WRPNGGRSLSVGCKGGICIWAP  172 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~---~---~---~~~~v~~l~-~s~~~~~ll~~~~dg~v~iw~~  172 (444)
                      .+-..+.||+.|+. +..|.|.+||.++..-...-+-   .   .   ...+..-+. |++-.+.+++.-+.|...|.+.
T Consensus       270 Y~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~  348 (668)
T COG4946         270 YPRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRP  348 (668)
T ss_pred             cccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECC
Confidence            34445678999887 5788999999987422111110   0   0   011111222 4444455666666777777665


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG  252 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~  252 (444)
                      ...-                            .++-.+...|.-..+.-+++-++.|..||..+-|+|.++++...+...
T Consensus       349 ~~~~----------------------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~  400 (668)
T COG4946         349 WDGY----------------------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD  400 (668)
T ss_pred             CCCe----------------------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence            4111                            111112356888888888888999999988999999999988888888


Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      -+.|.++..+|+|++++.+.....+.++|+.+++.+... ...+-|+.+.|||+++++|.+.-..-....+++.+.    
T Consensus       401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm----  476 (668)
T COG4946         401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM----  476 (668)
T ss_pred             ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec----
Confidence            899999999999999999998889999999999986543 455679999999999999998776555556665542    


Q ss_pred             CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                             ....+-..+... .=.+-+|.|||++|.--+.-
T Consensus       477 -------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~R  509 (668)
T COG4946         477 -------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSAR  509 (668)
T ss_pred             -------CCCeEEEecCCcccccCcccCCCCcEEEEEecc
Confidence                   222221111111 22456788899888766543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=5.9e-10  Score=96.64  Aligned_cols=192  Identities=10%  Similarity=0.060  Sum_probs=134.9

Q ss_pred             CeEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEec-C--CcEEEEecCCCCCcceeecccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSYPGNAASVRSGAA  186 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-d--g~v~iw~~~~~~~~~~~~~~~~  186 (444)
                      ..|+++-.+|.+.+|....+.  ...... ......+..|.-++....+++.|+ .  ..+.|||++....+..-...  
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~-la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv--  192 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIK-LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV--  192 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCcccccccee-eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC--
Confidence            356677889999999998531  111111 123356777888887777877554 5  78999999854222111111  


Q ss_pred             ccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEe
Q 013347          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWS  262 (444)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~s  262 (444)
                       +        ++      .+.-.-.-.++++.|-+.  ...|++++.-+ ++++||.+.++...  +.-...+++++...
T Consensus       193 -p--------nD------~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-qvR~YDt~~qRRPV~~fd~~E~~is~~~l~  256 (412)
T KOG3881|consen  193 -P--------ND------RLGLRVPVWITDIRFLEGSPNYKFATITRYH-QVRLYDTRHQRRPVAQFDFLENPISSTGLT  256 (412)
T ss_pred             -C--------Cc------cccceeeeeeccceecCCCCCceEEEEecce-eEEEecCcccCcceeEeccccCcceeeeec
Confidence             0        00      011111246788899887  78899999998 99999999765432  33346889999999


Q ss_pred             cCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          263 PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       263 p~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      |+++++++|..-+.+..||+++++.  ..+.+..+.++++..+|.+++++.+ +-|..+++.+
T Consensus       257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~-GLDRyvRIhD  318 (412)
T KOG3881|consen  257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC-GLDRYVRIHD  318 (412)
T ss_pred             CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee-ccceeEEEee
Confidence            9999999999999999999999988  3367888999999999999999866 3333444443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.5e-09  Score=97.14  Aligned_cols=244  Identities=16%  Similarity=0.198  Sum_probs=156.1

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC-CeEEEEe------cCCcEEEEecCCC
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG-GRSLSVG------CKGGICIWAPSYP  175 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~------~dg~v~iw~~~~~  175 (444)
                      ++..|+.|..+.|-. ..+.+.+|+.........   .-|...|+.+.+||.+ ...+++-      .-..|+||.....
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~---kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH---KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccceee---eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            688899988765532 467899999986322222   3467789999999973 3444442      1267999988733


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEe--eCC--------CeEEEEEcCCC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SAS--YES--------SSFTIWDVAQG  244 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~--~d~--------~~i~iwd~~~~  244 (444)
                      +....+....                   .++    ..=..+.|++-|.-|+ .++  -|.        .++++.+++..
T Consensus       205 ~~~~~~a~ks-------------------FFk----adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~  261 (566)
T KOG2315|consen  205 GQHQPVANKS-------------------FFK----ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE  261 (566)
T ss_pred             cccchhhhcc-------------------ccc----cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence            3222222110                   011    2224567777655332 221  121        26888888844


Q ss_pred             CceeeecCCCCeEEEEEecCCCeEEE--EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          245 LGTPIRRGFGGLSILKWSPTGDYFFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       245 ~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      .+..-....++|.++.|+|+++.|++  |-+-.++.|||++..-...+  ..++-+++-|+|.|++|+.++-++ .-+.+
T Consensus       262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGN-L~G~m  338 (566)
T KOG2315|consen  262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGN-LPGDM  338 (566)
T ss_pred             eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--CCCCccceEECCCCCEEEEeecCC-CCCce
Confidence            44444555799999999999998854  55667899999986544333  345668899999999988765443 34556


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      .+|+..          +...+..+... .-+-+.|+|||++++|+...-.-+.|+.++||+....
T Consensus       339 EvwDv~----------n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  339 EVWDVP----------NRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEecc----------chhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            665532          22333333322 3456889999999999987655556799999998753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.27  E-value=3.8e-08  Score=100.43  Aligned_cols=295  Identities=15%  Similarity=0.240  Sum_probs=178.0

Q ss_pred             cceEEEEEecCCCeEEEEECCC----eEEEEEccCCCCceeEEe------cCCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347          100 VDLQGVSWHQHKHIVAFISGST----QVIVRDYEDSGKDACILT------SDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg----~v~iw~~~~~~~~~~~~~------~~~~~~v~~l~~s~~~~~ll~~~~dg~v~i  169 (444)
                      ..+...+|.+....+.++....    .+.+-.............      ....+.|.++.+-++...++++..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            3567778888766554443222    334443333221111111      123568999999999888999999999999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC------
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ------  243 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~------  243 (444)
                      ...+....                   ...++++..+    +..|.+++||||+..|+.++.++ ++.+.+..=      
T Consensus       102 ~~~~~~~~-------------------~~~~E~VG~v----d~GI~a~~WSPD~Ella~vT~~~-~l~~mt~~fd~i~E~  157 (928)
T PF04762_consen  102 VREDPDPD-------------------EDEIEIVGSV----DSGILAASWSPDEELLALVTGEG-NLLLMTRDFDPISEV  157 (928)
T ss_pred             EEccCCCC-------------------CceeEEEEEE----cCcEEEEEECCCcCEEEEEeCCC-EEEEEeccceEEEEe
Confidence            83331111                   1112222222    47899999999999999999887 777653210      


Q ss_pred             -------C-----------Cceeee------------c------------CCCCeEEEEEecCCCeEEEEec---C---C
Q 013347          244 -------G-----------LGTPIR------------R------------GFGGLSILKWSPTGDYFFAAKF---D---G  275 (444)
Q Consensus       244 -------~-----------~~~~~~------------~------------~~~~v~~~~~sp~~~~l~~~~~---d---~  275 (444)
                             +           +..+..            .            ....-..++|-.||.+||+.+.   .   +
T Consensus       158 ~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R  237 (928)
T PF04762_consen  158 PLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRR  237 (928)
T ss_pred             ecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence                   0           000000            0            1123457889999999987764   2   5


Q ss_pred             cEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee
Q 013347          276 TFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE  353 (444)
Q Consensus       276 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~  353 (444)
                      .++||+-+ |.... ...-.+--.+++|.|.|++||+.-..... ..+-++....     +.  .++-.-.+.... .|.
T Consensus       238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~-~~VvFfErNG-----Lr--hgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR-HDVVFFERNG-----LR--HGEFTLRFDPEEEKVI  308 (928)
T ss_pred             EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC-cEEEEEecCC-----cE--eeeEecCCCCCCceee
Confidence            79999977 55532 22333444678999999999977543333 3333332211     00  011011111222 789


Q ss_pred             EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-CCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      .+.|++|+..||....+       .|++|-..+-.-.   +-..+.- ....+..+.|+|...+    .|.+...+|.+.
T Consensus       309 ~l~Wn~ds~iLAv~~~~-------~vqLWt~~NYHWY---LKqei~~~~~~~~~~~~Wdpe~p~----~L~v~t~~g~~~  374 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLED-------RVQLWTRSNYHWY---LKQEIRFSSSESVNFVKWDPEKPL----RLHVLTSNGQYE  374 (928)
T ss_pred             EEEECCCCCEEEEEecC-------CceEEEeeCCEEE---EEEEEEccCCCCCCceEECCCCCC----EEEEEecCCcEE
Confidence            99999999999998765       5999998875432   2233332 2334556999997444    567777778888


Q ss_pred             eeeeeeecc
Q 013347          433 TYPLIFRSH  441 (444)
Q Consensus       433 ~~~~~~~~~  441 (444)
                      .+.+.+...
T Consensus       375 ~~~~~~~v~  383 (928)
T PF04762_consen  375 IYDFAWDVS  383 (928)
T ss_pred             EEEEEEEEE
Confidence            887776544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.26  E-value=1e-08  Score=106.44  Aligned_cols=263  Identities=11%  Similarity=0.068  Sum_probs=150.1

Q ss_pred             EEEEEecC-CCeEEEEECCCeEEEEEccCCCCceeEEec-C------------CCCCeEEEEEeeCCCeEEEEec-CCcE
Q 013347          103 QGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTS-D------------SQRDVKVLEWRPNGGRSLSVGC-KGGI  167 (444)
Q Consensus       103 ~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-~------------~~~~v~~l~~s~~~~~ll~~~~-dg~v  167 (444)
                      ..++++++ ++++++-+.++.|++||...  .....+.. +            +-.....+++.++++.++++.. .+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            46889885 55666666888999999863  33322211 1            1124678999998776666654 4789


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCc
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLG  246 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~  246 (444)
                      +++|.... ....+... .........+....        ...-.....++++|+ +..+++.+.++ .|++||..++..
T Consensus       649 r~id~~~~-~V~tlag~-G~~g~~~~gg~~~~--------~~~ln~P~gVa~dp~~g~LyVad~~~~-~I~v~d~~~g~v  717 (1057)
T PLN02919        649 REIDFVNE-TVRTLAGN-GTKGSDYQGGKKGT--------SQVLNSPWDVCFEPVNEKVYIAMAGQH-QIWEYNISDGVT  717 (1057)
T ss_pred             EEEecCCC-EEEEEecc-CcccCCCCCChhhh--------HhhcCCCeEEEEecCCCeEEEEECCCC-eEEEEECCCCeE
Confidence            99987632 22222110 00000000000000        000124568999995 44445545555 999999877654


Q ss_pred             eeeecC---------------CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccc--------------c----
Q 013347          247 TPIRRG---------------FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWS--------------S----  292 (444)
Q Consensus       247 ~~~~~~---------------~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~--------------~----  292 (444)
                      ..+.+.               -.....++++|+++.| ++-+.++.|++||+.++....+.              .    
T Consensus       718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            322211               1235679999999855 55666789999999876532111              0    


Q ss_pred             ----CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc----cccccccCC-ceeEEEECCCCCE
Q 013347          293 ----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP----DIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       293 ----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                          .-....+++++++|.. +++...+.++..|+.......   .+.. .+.    .-....+.- ....++++++|++
T Consensus       798 g~~~~l~~P~Gvavd~dG~L-YVADs~N~rIrviD~~tg~v~---tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~l  872 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKDGQI-YVADSYNHKIKKLDPATKRVT---TLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRL  872 (1057)
T ss_pred             hhhhhccCCceeeEeCCCcE-EEEECCCCEEEEEECCCCeEE---EEec-cCCcCCCCCcccccccCCceEEEEeCCCCE
Confidence                0113468899999985 445566677777765321000   0000 000    000011111 5678999999997


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCe
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +++-+.+      ++|++||+.+++.
T Consensus       873 yVaDt~N------n~Irvid~~~~~~  892 (1057)
T PLN02919        873 FVADTNN------SLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEECCC------CEEEEEECCCCcc
Confidence            7766555      8999999998765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.26  E-value=3.8e-10  Score=109.37  Aligned_cols=196  Identities=14%  Similarity=0.090  Sum_probs=144.7

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      .|....+.-+..+++.+..++.+-+||.........+....                 ...+     ....-+.++++.-
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-----------------r~~l-----~~~~~~g~s~~~~  146 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE-----------------RCTL-----YSSLIIGDSAEEL  146 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc-----------------eEEE-----EeEEEEeccCcEE
Confidence            34444555555788888889999999987433322222210                 0000     1222344567778


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCc-eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEE
Q 013347          225 YLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGAT  301 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~  301 (444)
                      ++++|+.-+ .|.+|+....+. ..+.+|.+.+.++.|+-||+++++.++|.++++|++.+.+..  ...+|...+..+.
T Consensus       147 ~i~~gsv~~-~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~  225 (967)
T KOG0974|consen  147 YIASGSVFG-EIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC  225 (967)
T ss_pred             EEEeccccc-cEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence            899999887 999999874433 347889999999999999999999999999999999998873  4568999999999


Q ss_pred             ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      |.|+  .++++ +.+.+...|..              ....+..+.+|.  .|+.++..++.-.+++++.|      +.+
T Consensus       226 ~~~n--~i~t~-gedctcrvW~~--------------~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~D------s~l  282 (967)
T KOG0974|consen  226 FLPN--RIITV-GEDCTCRVWGV--------------NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGND------STL  282 (967)
T ss_pred             eccc--eeEEe-ccceEEEEEec--------------ccceehhhhhhhhcceeEEEEcCCceEEEeeccC------cch
Confidence            9999  56654 44444444432              344455777777  89999999999999999988      999


Q ss_pred             EEEEcCC
Q 013347          380 AIYDARR  386 (444)
Q Consensus       380 ~vwd~~~  386 (444)
                      ++|++..
T Consensus       283 k~~~l~~  289 (967)
T KOG0974|consen  283 KLWDLNG  289 (967)
T ss_pred             hhhhhhc
Confidence            9999865

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=7.2e-09  Score=94.00  Aligned_cols=271  Identities=17%  Similarity=0.256  Sum_probs=156.1

Q ss_pred             ceEEEEEecCCCeEEEEE-----------CCCeEEEEEccCCCCceeEEec-CCCCCe-EEEEEeeCCCeEEEEecCCcE
Q 013347          101 DLQGVSWHQHKHIVAFIS-----------GSTQVIVRDYEDSGKDACILTS-DSQRDV-KVLEWRPNGGRSLSVGCKGGI  167 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-----------~dg~v~iw~~~~~~~~~~~~~~-~~~~~v-~~l~~s~~~~~ll~~~~dg~v  167 (444)
                      +|.-+.|||..++|++=+           ....+.|||+.+ |.....+.. .....+ .-..||.| ..+++.-...+|
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~~si  328 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTGNSI  328 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-cchhcceeccCCCccccceEEeccC-CceeEEeccceE
Confidence            699999999999999855           125799999999 555544432 122223 34689999 455566566888


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceE---------------EE-----EEeeccCCCce--EEEEEccCCCe
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT---------------LV-----DFLRSQNGEQI--TALSWGPDGRY  225 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~v--~~~~~sp~~~~  225 (444)
                      .||+... -.+....+.+...+..+.+++.....               +.     +.++...--.|  ..+-|-.+|.+
T Consensus       329 sIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  329 SIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            8888652 11111112222233334444433211               00     01111100112  23556678888


Q ss_pred             EEEEeeC-------C--CeEEEEEcCCCCce-eeecCCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCC-ce-ecc
Q 013347          226 LASASYE-------S--SSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTW-TS-EPW  290 (444)
Q Consensus       226 l~~~~~d-------~--~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~-~~-~~~  290 (444)
                      |+.--.-       |  ..+.|+.++..... .....+..|...+|-|.|+.+++-+.   ..++.+|.+++. .. ..+
T Consensus       408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence            7653211       0  03556666554332 24455678999999999998865433   357899988742 22 111


Q ss_pred             -ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc--cccccCCceeEEEECCCCCEEEEE
Q 013347          291 -SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI--VSLTGSQGIEKIAWDASGERLAVS  367 (444)
Q Consensus       291 -~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~  367 (444)
                       .-.....+.+.|+|.|+++++++-.+ +-+.+.+.+.           +....  .....|...+.+.|.|.|+|++++
T Consensus       488 k~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~-----------~~a~~k~~~~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  488 KELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDT-----------DYADLKDTASPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             hhhcccccceEEEcCCCcEEEEEEecc-cccceEEEec-----------chhhhhhccCccccccccceECCCCCEEEEe
Confidence             12235678999999999998775431 2334444332           11111  112234467889999999999999


Q ss_pred             ecCCCccccceEEEEEcCC
Q 013347          368 YKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       368 ~~d~~~~~d~~i~vwd~~~  386 (444)
                      +.-..-.-|+--++|+.+.
T Consensus       556 ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  556 SSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             eehhhhccccceEEEEeec
Confidence            8754333346677787764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=3.5e-09  Score=95.10  Aligned_cols=274  Identities=14%  Similarity=0.161  Sum_probs=161.7

Q ss_pred             ccceEEEEEecCCCeEEEEEC---------------CCeEEEEEccCCCCceeEEecCCCCC--eE-EEEEeeCCCeEEE
Q 013347           99 EVDLQGVSWHQHKHIVAFISG---------------STQVIVRDYEDSGKDACILTSDSQRD--VK-VLEWRPNGGRSLS  160 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~---------------dg~v~iw~~~~~~~~~~~~~~~~~~~--v~-~l~~s~~~~~ll~  160 (444)
                      ...|..+.|||.+++|.+-+.               ++.+.+||..+ +.....+ .....+  .+ -+.|+-+. .+++
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s-g~iv~sf-~~~~q~~~~Wp~~k~s~~D-~y~A  147 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS-GMIVFSF-NGISQPYLGWPVLKFSIDD-KYVA  147 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC-ceeEeec-cccCCcccccceeeeeecc-hhhh
Confidence            347999999999999998553               23589999997 4443333 233333  44 67888884 4444


Q ss_pred             EecCCcEEEEecCCCCCcceeeccccccccccccCCCCc------eE--------EEEE--------eeccC--CCceEE
Q 013347          161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR------WT--------LVDF--------LRSQN--GEQITA  216 (444)
Q Consensus       161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~--------~~~~~--~~~v~~  216 (444)
                      --....+.|+++...-....+...+...+..+..++.+.      |.        ..+.        +..+.  ...=..
T Consensus       148 Rvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q  227 (561)
T COG5354         148 RVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ  227 (561)
T ss_pred             hhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence            335577888886311111111111111122222222210      00        0000        00000  011246


Q ss_pred             EEEccCCCeEEEEee-----------CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE--EecCCcEEEEECC
Q 013347          217 LSWGPDGRYLASASY-----------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA--AKFDGTFYLWETN  283 (444)
Q Consensus       217 ~~~sp~~~~l~~~~~-----------d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~v~iwd~~  283 (444)
                      +.|++.|++|+.-..           .. .+.|+++....+.......++|...+|.|.++.+++  |-.+..+.++|++
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfges-nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGES-NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccc-eEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence            788899988765321           12 688888885544444466899999999999988754  4578899999999


Q ss_pred             CCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE
Q 013347          284 TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER  363 (444)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  363 (444)
                      +.-  .+......=+.+.|+|.++++++++-+ ..-+.+.+++...         ....+..+.+. ...-+.|+|||++
T Consensus       307 ~Nl--~~~~Pe~~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~---------rf~~~~~~~~~-n~s~~~wspd~qF  373 (561)
T COG5354         307 GNL--RFYFPEQKRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAG---------RFKVAGAFNGL-NTSYCDWSPDGQF  373 (561)
T ss_pred             cce--EEecCCcccccccccCcccEEEEecCC-ccccceEEeccCC---------ceEEEEEeecC-CceEeeccCCceE
Confidence            862  223333445678899999999876433 3345555554311         11122222222 3455789999999


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCe
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +.+....-..+-|+.|.|||+...+.
T Consensus       374 ~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         374 YDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             EEecCCCcccccCcceEEEEecCchh
Confidence            98876544445579999999986443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.25  E-value=6.8e-09  Score=107.78  Aligned_cols=267  Identities=12%  Similarity=0.086  Sum_probs=157.1

Q ss_pred             EEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeec-cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          147 KVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS-GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       147 ~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      ..++++++++.++++.. .+.|++||... .....+.. +..   + .   .++.      +....-.....++++++++
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~---G-~---~dG~------~~~a~f~~P~GIavd~~gn  636 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEE---G-L---RDGS------FEDATFNRPQGLAYNAKKN  636 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCc---C-C---CCCc------hhccccCCCcEEEEeCCCC
Confidence            46788876565655544 58899999762 22111111 100   0 0   0000      0000113568899999988


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCceeeecC-----------------CCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCc
Q 013347          225 YLASASYESSSFTIWDVAQGLGTPIRRG-----------------FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----------------~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~  286 (444)
                      .|+++...++.|+++|+.++....+...                 -.....++++| ++..+++...++.|++||..++.
T Consensus       637 ~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        637 LLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            7777766545899999887654433211                 12346799999 45566777778999999998765


Q ss_pred             eecccc---------------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc----
Q 013347          287 SEPWSS---------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT----  347 (444)
Q Consensus       287 ~~~~~~---------------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  347 (444)
                      ...+.+               .-...+.++++|++..|+++...+..++.|++..........-..........+-    
T Consensus       717 v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        717 TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            532211               1124567999999998888877777888887643210000000000000000000    


Q ss_pred             -----cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee--------eeCCCCCCcceeeeeCC
Q 013347          348 -----GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--------IRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       348 -----~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~i~~v~~spdg  414 (444)
                           .......++++++|+++++-+.+      ++|++||..++.+........        ..+.-..+..++++++|
T Consensus       797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG  870 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG  870 (1057)
T ss_pred             chhhhhccCCceeeEeCCCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence                 01134689999999977766655      899999998876542211100        11122357789999998


Q ss_pred             CCCCCceEEEEeccceeeeeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      ++     +.+...+++|.+|++.-
T Consensus       871 ~l-----yVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        871 RL-----FVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CE-----EEEECCCCEEEEEECCC
Confidence            74     56677889999888743

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3e-10  Score=101.12  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=167.6

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..|.+.|..|.|+..|..+++++.|..|.+||+........+.+                        +|. ..|....|
T Consensus       139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------------------------GH~-~NvfQaKF  193 (559)
T KOG1334|consen  139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------------------------GHC-NNVFQAKF  193 (559)
T ss_pred             cCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------------------------ccc-cchhhhhc
Confidence            58999999999999988888888899999999985544433333                        343 67777778


Q ss_pred             cc--CCCeEEEEeeCCCeEEEEEcCCCC----ceeeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec---
Q 013347          220 GP--DGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---  289 (444)
Q Consensus       220 sp--~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~---  289 (444)
                      -|  +.+.+++++.|| ++++=.+....    ...+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.+....   
T Consensus       194 iP~s~d~ti~~~s~dg-qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  194 IPFSGDRTIVTSSRDG-QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             cCCCCCcCceeccccC-ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence            77  456788999998 99987665432    234667889999999999754 56899999999999998876522   


Q ss_pred             -cccCCC---ceeEEEECCCCCE-EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCC
Q 013347          290 -WSSTSG---FVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGE  362 (444)
Q Consensus       290 -~~~~~~---~v~~~~~sp~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~  362 (444)
                       ...+..   ..+.++.+|...+ ++++ ..+....+++..+........  .+..-+...+....  .|++++|+.++.
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~nt~~faVg-G~dqf~RvYD~R~~~~e~~n~--~~~~f~p~hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPRNTNEFAVG-GSDQFARVYDQRRIDKEENNG--VLDKFCPHHLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             eeccCCccceeeeeEecCCCCccccccC-Chhhhhhhhcccchhhccccc--hhhhcCCccccccCcccceeEEecCCcc
Confidence             112333   5688999998874 4444 333333333332211100000  00111111111212  799999998887


Q ss_pred             EEEEEecCCCccccceEEEEEcCCCCe---EE----EEEe-eeeeCCCC--CCcceee-eeCCCCCCCceEEEEecccee
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRTPL---IS----LSLI-GFIRGPGD--NPKPVAF-SFHDKFKQGPLLSVCWSSGFC  431 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~---~~----~~~~-~~~~~~~~--~i~~v~~-spdg~~~~~~~l~~~~~~g~i  431 (444)
                      -|.++..|      -.|++|....+..   ..    .... +.++||..  .|..+-| -|...|     +.-|.+.|+|
T Consensus       350 ElLaSYnD------e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-----VvSGSDCGhI  418 (559)
T KOG1334|consen  350 ELLASYND------EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-----VVSGSDCGHI  418 (559)
T ss_pred             ceeeeecc------cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce-----EEecCccceE
Confidence            67677766      6799995443221   00    0112 23788854  4677754 465555     7788999999


Q ss_pred             eeeee
Q 013347          432 CTYPL  436 (444)
Q Consensus       432 ~~~~~  436 (444)
                      -+|+-
T Consensus       419 FiW~K  423 (559)
T KOG1334|consen  419 FIWDK  423 (559)
T ss_pred             EEEec
Confidence            99974

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.21  E-value=7.6e-09  Score=92.97  Aligned_cols=310  Identities=15%  Similarity=0.099  Sum_probs=180.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---------------
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------------  164 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---------------  164 (444)
                      .++..++|||.|++|++.. -..|.+|.-....+. ..  ..| ..|..+.|+|++++|.+=...               
T Consensus        33 ~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l-~~--~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKL-VR--FRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cchhheeecCcchheehhh-ccceEEccccchhhe-ee--eec-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            3688899999999999754 445789987763322 22  234 468999999997777665432               


Q ss_pred             CcEEEEecCCCCCcceeecccccccc--ccccCCCCceE--------EEEE----eecc-----CCCceEEEEEccCCC-
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLG--ALSRGPGTRWT--------LVDF----LRSQ-----NGEQITALSWGPDGR-  224 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~----~~~~-----~~~~v~~~~~sp~~~-  224 (444)
                      +.+.+||+..+.-............+  -+.++-++.+.        .+..    +..|     ....+....|+|.++ 
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~  187 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH  187 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence            35899999854433222211111000  01111111100        0111    1111     124678889999643 


Q ss_pred             -eEEEE-----eeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeEEEEe-----------cCCcEEEEECCCCc
Q 013347          225 -YLASA-----SYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK-----------FDGTFYLWETNTWT  286 (444)
Q Consensus       225 -~l~~~-----~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-----------~d~~v~iwd~~~~~  286 (444)
                       .|++-     +... ++++|.+..+..+..... +-.-..+.|++.|++|+.--           ....++|+++....
T Consensus       188 ~~la~~tPEk~~kpa-~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~  266 (561)
T COG5354         188 DELAYWTPEKLNKPA-MVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS  266 (561)
T ss_pred             ceEEEEccccCCCCc-EEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence             34432     3454 899999886654443221 22334688999999875321           12468899988555


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA  365 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  365 (444)
                      ........++|...+|.|.++.+++.. -....+...++.              .. +...-....=..+.|+|.+++++
T Consensus       267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr--------------~N-l~~~~Pe~~rNT~~fsp~~r~il  331 (561)
T COG5354         267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR--------------GN-LRFYFPEQKRNTIFFSPHERYIL  331 (561)
T ss_pred             cceeccccccceeeeecccCCceeEEecccccceeecccc--------------cc-eEEecCCcccccccccCcccEEE
Confidence            433336688999999999998877654 333333333321              11 11111111335678999999999


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE-Eeccceeeeeeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGFCCTYPLIFR  439 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~-~~~~g~i~~~~~~~~  439 (444)
                      .++-|+-.   |.|-+||...+...    ...+.+  ...+-+.|||||+|...++-+- --.|..|.+|++.-.
T Consensus       332 ~agF~nl~---gni~i~~~~~rf~~----~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         332 FAGFDNLQ---GNIEIFDPAGRFKV----AGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EecCCccc---cceEEeccCCceEE----EEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            99888654   89999999875544    223333  2334568999999832111000 023566777766543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1.8e-09  Score=98.58  Aligned_cols=166  Identities=16%  Similarity=0.166  Sum_probs=124.0

Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCceeeec----CCCCeEEEEEe------c--------------CCCeEEEEecCC
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKWS------P--------------TGDYFFAAKFDG  275 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~v~~~~~s------p--------------~~~~l~~~~~d~  275 (444)
                      .|...++|....|| .+++||...++...-+.    ..+...+..|.      |              |...++-|...|
T Consensus         2 ~~~~~~~A~~~~~g-~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    2 PPALDYFALSTGDG-RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             CchhheEeecCCCC-eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            34567889999998 99999999886554222    23344444442      2              234667888899


Q ss_pred             cEEEEECCCCceec-c--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-c
Q 013347          276 TFYLWETNTWTSEP-W--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G  351 (444)
Q Consensus       276 ~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  351 (444)
                      .|.+|+...++... +  -.|.+.|+++.++.+-..|.++ +.+..+..|.+.             ....++.+.... .
T Consensus        81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~-------------~~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEK-------------EKVIIRIWKEQKPL  146 (541)
T ss_pred             cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEecc-------------cceeeeeeccCCCc
Confidence            99999999998843 2  3789999999999988888855 444555555432             233344555555 7


Q ss_pred             eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      +.+++.+|||+.|++++        +.|++||+++++++     .++.||.+.|++++|.-+
T Consensus       147 ~~sl~is~D~~~l~~as--------~~ik~~~~~~kevv-----~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--------RQIKVLDIETKEVV-----ITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             cceEEEcCCCCEEEecc--------ceEEEEEccCceEE-----EEecCCCcceEEEEEEEe
Confidence            89999999999999987        67999999998887     689999999999999887

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.20  E-value=2.8e-08  Score=101.34  Aligned_cols=310  Identities=16%  Similarity=0.239  Sum_probs=179.0

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEE----EccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVR----DYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw----~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~  174 (444)
                      ...|.++.+-++...++.+..+|.|.+.    +...  ...... ..-...|.+++||||+..++.+..++++.+.+-+-
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~V-G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIV-GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEE-EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            3469999999999999999999999998    4443  222222 24567899999999988888888888888776441


Q ss_pred             C------------CCcceeeccccccccccccCCCCceE--E---------EEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347          175 P------------GNAASVRSGAASFLGALSRGPGTRWT--L---------VDFLRSQNGEQITALSWGPDGRYLASASY  231 (444)
Q Consensus       175 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  231 (444)
                      .            +....+..|-++...-+..+..+.-.  .         ...+. . +..-..++|-.||+++|+.+.
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~-dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-W-DDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-c-CCCceEEEECCCCcEEEEEEE
Confidence            1            11111111100000000000000000  0         01112 2 245678999999999998875


Q ss_pred             ---CC--CeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCCcee----ccccCCCcee
Q 013347          232 ---ES--SSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSE----PWSSTSGFVT  298 (444)
Q Consensus       232 ---d~--~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~~----~~~~~~~~v~  298 (444)
                         .+  +.++||+-+ |....... -.+--.+++|.|.|++|++...   ...|.+|.-+.-+..    .+......|.
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence               22  489999976 43332222 1233357899999999987764   346788876654432    2224566799


Q ss_pred             EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCC-CEEEEEecCCCccc
Q 013347          299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASG-ERLAVSYKGGDDIY  375 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg-~~l~~~~~d~~~~~  375 (444)
                      .+.|++++..|++...+.  +..|...+-.+           -..+.+.  ....+..+.|+|.. ..|.....+     
T Consensus       309 ~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHW-----------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~-----  370 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR--VQLWTRSNYHW-----------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN-----  370 (928)
T ss_pred             EEEECCCCCEEEEEecCC--ceEEEeeCCEE-----------EEEEEEEccCCCCCCceEECCCCCCEEEEEecC-----
Confidence            999999999999876443  44444433221           1111122  12234447777743 334444443     


Q ss_pred             cceEEEEE----cCC----------------CCeEEEEEe-----------eeeeCCCCCCcceeeeeCCCCCCCceEEE
Q 013347          376 KGLIAIYD----ARR----------------TPLISLSLI-----------GFIRGPGDNPKPVAFSFHDKFKQGPLLSV  424 (444)
Q Consensus       376 d~~i~vwd----~~~----------------~~~~~~~~~-----------~~~~~~~~~i~~v~~spdg~~~~~~~l~~  424 (444)
                       |.+..++    ...                |..+..++.           ..+. -...|.+++|++++.-     +++
T Consensus       371 -g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~-----~av  443 (928)
T PF04762_consen  371 -GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSR-----FAV  443 (928)
T ss_pred             -CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCe-----EEE
Confidence             2232222    111                111111111           1111 2467889999988654     778


Q ss_pred             Eeccceeeeeeeeee
Q 013347          425 CWSSGFCCTYPLIFR  439 (444)
Q Consensus       425 ~~~~g~i~~~~~~~~  439 (444)
                      -.++|.|.+|.+...
T Consensus       444 l~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLK  458 (928)
T ss_pred             EECCCCEEEEEecCC
Confidence            889999999986543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.17  E-value=5.9e-10  Score=104.14  Aligned_cols=300  Identities=13%  Similarity=0.170  Sum_probs=194.1

Q ss_pred             cccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC--eEEEEecCCcEEEEecCCC
Q 013347           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus        98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~--~ll~~~~dg~v~iw~~~~~  175 (444)
                      ...++.++..+|.|+-+|.++.-|. .+.|+..+......+.+-..-.|-.+.|+|...  +.++......-.+|++...
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            3456889999999999999887765 577888877777766544455677888987532  3455555566668988732


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCceee--ecC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPI--RRG  252 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~~~--~~~  252 (444)
                      ...                      .+.-.+.+|. ..|+.+.|+|+. ..+++++.|- .+..||+++......  ..-
T Consensus       102 s~~----------------------aIef~lhghs-raitd~n~~~q~pdVlatcsvdt-~vh~wd~rSp~~p~ys~~~w  157 (1081)
T KOG0309|consen  102 SSN----------------------AIEFVLHGHS-RAITDINFNPQHPDVLATCSVDT-YVHAWDMRSPHRPFYSTSSW  157 (1081)
T ss_pred             Ccc----------------------ceEEEEecCc-cceeccccCCCCCcceeeccccc-cceeeeccCCCcceeeeecc
Confidence            211                      1223467775 899999999854 5688899997 999999998754322  122


Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      ......++|+-....+.+.+..+.|++||++.+..  ..+.+|...+++++|..--.-....++.++++..|+..+.   
T Consensus       158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS---  234 (1081)
T KOG0309|consen  158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS---  234 (1081)
T ss_pred             cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc---
Confidence            35566789987555565566678899999998765  5567788889999987644333335555566666554321   


Q ss_pred             cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE-----EEEEeeeeeCCCCCC
Q 013347          331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-----SLSLIGFIRGPGDNP  405 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~i  405 (444)
                              +.....+++...+|+.-.+-|-|+-.+.--..++    +.+-+++.+.....     ...++..+.||.+.|
T Consensus       235 --------t~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~----n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  235 --------TTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG----NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             --------ccccceeccccCcceeccccccCceeEeccccCC----eeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence                    1111222222336777777776543322222211    34444433321111     345678899999999


Q ss_pred             cceeeeeC----CCCCCCceEEEEec-cceeeeeeee
Q 013347          406 KPVAFSFH----DKFKQGPLLSVCWS-SGFCCTYPLI  437 (444)
Q Consensus       406 ~~v~~spd----g~~~~~~~l~~~~~-~g~i~~~~~~  437 (444)
                      ...-|-..    |.|..-.+..|.|+ |..+++||+.
T Consensus       303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             HHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            88888653    34445557778777 8889999874

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=1.2e-08  Score=85.50  Aligned_cols=246  Identities=12%  Similarity=0.068  Sum_probs=150.9

Q ss_pred             ccceEEEEEec---CCC-eEEEEECCCeEEEEEccCCCCceeEEecCC------CCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347           99 EVDLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGCKGGIC  168 (444)
Q Consensus        99 ~~~v~~~~~sp---~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~------~~~v~~l~~s~~~~~ll~~~~dg~v~  168 (444)
                      +..+..+.|..   +|. .++-+..+|.|.++..... .....+ .+-      .....++.|++-+..++++-.+|.+.
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~-~ss~~L-~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED-ESSVHL-RGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS  146 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccc-eeeeee-cccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence            34577777774   455 4556678899999987742 111111 111      11245678898888887777788888


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCC-c
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL-G  246 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~-~  246 (444)
                      +-+....                       ..+..+.++.|. -...-..|+. +.+.+++|+.|+ .+..||++... .
T Consensus       147 ~v~~t~~-----------------------~le~vq~wk~He-~E~Wta~f~~~~pnlvytGgDD~-~l~~~D~R~p~~~  201 (339)
T KOG0280|consen  147 GVYETEM-----------------------VLEKVQTWKVHE-FEAWTAKFSDKEPNLVYTGGDDG-SLSCWDIRIPKTF  201 (339)
T ss_pred             EEeccee-----------------------eeeecccccccc-eeeeeeecccCCCceEEecCCCc-eEEEEEecCCcce
Confidence            5444310                       112233567775 6778888875 456788899898 99999999433 2


Q ss_pred             ee--eecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCC-ceeccccCCCceeEEEECCCCC--EEEEEEcCCceEE
Q 013347          247 TP--IRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGR--MILLAFAGSLTLG  320 (444)
Q Consensus       247 ~~--~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~~~~~~~  320 (444)
                      +.  ...|...|.++.-+| .+.++++|+.|-.|++||.++- +...-..-.+.|+.+.++|.-.  .++++.-++  ..
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G--~k  279 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG--AK  279 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC--ce
Confidence            21  345778899988876 5789999999999999999954 3333334568899999999654  333332222  34


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEE-EEEcCC
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIA-IYDARR  386 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~-vwd~~~  386 (444)
                      +++..+....        ........+.|. -...-.|......||+++.     ||+.++ +|-.-+
T Consensus       280 i~~~~~~~~e--------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF-----YDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  280 ILDSSDKVLE--------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF-----YDKKIRQLWLHIT  334 (339)
T ss_pred             EEEecccccc--------hheeeeccccccceeeccccccccceeeeeec-----cccceeeeeeecc
Confidence            4444332110        001122333443 3444556444467888763     346655 775444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.12  E-value=8.7e-10  Score=106.93  Aligned_cols=153  Identities=12%  Similarity=0.059  Sum_probs=124.7

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      ..-+-++++.-++++|+.-+.|.+|+.... +... ...+|.+.|.++.|+-||+++++++.|.++++|++++.+...  
T Consensus       136 ~~~~g~s~~~~~i~~gsv~~~iivW~~~~d-n~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--  211 (967)
T KOG0974|consen  136 SLIIGDSAEELYIASGSVFGEIIVWKPHED-NKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--  211 (967)
T ss_pred             EEEEeccCcEEEEEeccccccEEEEecccc-CCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--
Confidence            444556777889999999999999999843 2222 336999999999999999999999999999999999554432  


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~  260 (444)
                                            ...-+|. .+|..+.|.|+  .+++++.|- +.++|+....+...+..|. ..++.++
T Consensus       212 ----------------------~~~fgHs-aRvw~~~~~~n--~i~t~gedc-tcrvW~~~~~~l~~y~~h~g~~iw~~~  265 (967)
T KOG0974|consen  212 ----------------------CTGFGHS-ARVWACCFLPN--RIITVGEDC-TCRVWGVNGTQLEVYDEHSGKGIWKIA  265 (967)
T ss_pred             ----------------------ccccccc-ceeEEEEeccc--eeEEeccce-EEEEEecccceehhhhhhhhcceeEEE
Confidence                                  1234565 89999999998  899999997 9999987765555566664 6799999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNT  284 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~  284 (444)
                      ..++...+++++.|+.+++||+.+
T Consensus       266 ~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  266 VPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EcCCceEEEeeccCcchhhhhhhc
Confidence            999888899999999999999864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=3.6e-09  Score=96.30  Aligned_cols=200  Identities=14%  Similarity=0.194  Sum_probs=138.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      -++++++.-..-|.+++....|+-++++. |....-+ ....+.++++..++-.+.+++++.+|.|..||.........+
T Consensus       136 GRDm~y~~~scDly~~gsg~evYRlNLEq-GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQ-GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             CccccccCCCccEEEeecCcceEEEEccc-ccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence            34556654333344445555677778876 3333322 244578999999998444444445899999999855544443


Q ss_pred             eccccccccccccCCCCceEEEEEeecc----CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC--CC
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQ----NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GG  255 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~  255 (444)
                      ....                   .+..|    ....|+++.|+.+|-.+++|..+| .+.|||+++.+...+..|.  -+
T Consensus       214 ~~~~-------------------~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~p  273 (703)
T KOG2321|consen  214 DAAS-------------------SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYELP  273 (703)
T ss_pred             eccc-------------------ccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCccc
Confidence            3221                   11111    124699999999999999999998 9999999999888777775  57


Q ss_pred             eEEEEEecC--CCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          256 LSILKWSPT--GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       256 v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      |..+.|.+.  ++.+++. ....++|||-.+|+..........++.+++-|++-+++++. ++..+..+-+.
T Consensus       274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP  343 (703)
T KOG2321|consen  274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIP  343 (703)
T ss_pred             eeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec-CCCcceeEEcc
Confidence            888999875  3444444 45689999999999876666666799999999998888764 44555555543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.10  E-value=4.3e-08  Score=81.15  Aligned_cols=236  Identities=11%  Similarity=-0.023  Sum_probs=148.5

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe-eCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s-~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  188 (444)
                      ...+||.|+..|...+|...+........ ..|...|+-+.=. -..-.++.++.|.++++.+++......         
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---------  152 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---------  152 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeee-cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---------
Confidence            34578899999999999998743332322 3455544433211 112357788889999999887322111         


Q ss_pred             ccccccCCCCceEEEEEeeccC-CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee----eecCCCCeEEEEEec
Q 013347          189 LGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----IRRGFGGLSILKWSP  263 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~----~~~~~~~v~~~~~sp  263 (444)
                                        ..|. .-.+.++++++|++++++.+... .|..|.+.......    .......-.+..|+.
T Consensus       153 ------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~-~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~  213 (344)
T KOG4532|consen  153 ------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSR-RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE  213 (344)
T ss_pred             ------------------eeeccccceeeeEEcCCCceEEEecCCC-cceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence                              1111 12478899999999999999887 99999987653322    223345567889999


Q ss_pred             CCCeEEEEecCCcEEEEECCCCce------eccccCCCceeEEEECCCCCE-EEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          264 TGDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       264 ~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~v~~~~~sp~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      ....+|++..||++.|||++....      .....|.+.++.+.|++-|.+ |+.-...-+.+..+++++.....-  +.
T Consensus       214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~--I~  291 (344)
T KOG4532|consen  214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV--IV  291 (344)
T ss_pred             CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE--Ee
Confidence            999999999999999999986543      223468999999999987753 333334446677777654321000  00


Q ss_pred             CCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          337 PVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       337 ~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                         ... .....|.  .|..-.|+.++.-+.+.+++       .+.=|++.++
T Consensus       292 ---i~~-d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-------~~ae~ni~sr  333 (344)
T KOG4532|consen  292 ---IPD-DVERKHNTQHIFGTNFNNENESNDVKNEL-------QGAEYNILSR  333 (344)
T ss_pred             ---cCc-cccccccccccccccccCCCcccccccch-------hhheeecccc
Confidence               000 0111222  46667777777666665543       4555665543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.09  E-value=2.7e-08  Score=93.11  Aligned_cols=237  Identities=15%  Similarity=0.206  Sum_probs=162.9

Q ss_pred             cccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC
Q 013347           75 STLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN  154 (444)
Q Consensus        75 ~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~  154 (444)
                      .+|.||.+.                  |.-+.|+-+.+.|-+...+|.|.||-+-.+......+-....+.|.+++|+.|
T Consensus        65 QtLeGH~~s------------------V~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d  126 (1189)
T KOG2041|consen   65 QTLEGHNAS------------------VMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD  126 (1189)
T ss_pred             hhhccCcce------------------EEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC
Confidence            678888665                  99999999999999988999999999887433333443456778999999999


Q ss_pred             CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC
Q 013347          155 GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS  234 (444)
Q Consensus       155 ~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  234 (444)
                      |.++..+-.||.|.+=.++.. .                       ..-+.+++.   ....+.|++|.+.++.+-..| 
T Consensus       127 G~kIcIvYeDGavIVGsvdGN-R-----------------------IwgKeLkg~---~l~hv~ws~D~~~~Lf~~ang-  178 (1189)
T KOG2041|consen  127 GTKICIVYEDGAVIVGSVDGN-R-----------------------IWGKELKGQ---LLAHVLWSEDLEQALFKKANG-  178 (1189)
T ss_pred             CcEEEEEEccCCEEEEeeccc-e-----------------------ecchhcchh---eccceeecccHHHHHhhhcCC-
Confidence            999999999998887666511 0                       011123332   345789999999988888887 


Q ss_pred             eEEEEEcCCCCcee--------eec----CCCCeEEEEEe--------cCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347          235 SFTIWDVAQGLGTP--------IRR----GFGGLSILKWS--------PTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS  294 (444)
Q Consensus       235 ~i~iwd~~~~~~~~--------~~~----~~~~v~~~~~s--------p~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  294 (444)
                      .+.+||.+..-...        ..+    ....+-.+.|.        ||-..|+.+-.+|.+.+..-.+.....+....
T Consensus       179 e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg  258 (1189)
T KOG2041|consen  179 ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG  258 (1189)
T ss_pred             cEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc
Confidence            99999976542111        111    12235556664        46678999999999988766554443344445


Q ss_pred             CceeEEEECCCCCEEEEEEcCCce-----EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEe
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLT-----LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY  368 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~  368 (444)
                      ..+..+.|+++|..+++++.+...     ...+++.+.           -+..+.+++-.. .|++++|-..|-.+|.+.
T Consensus       259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-----------~G~i~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-----------YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             cEeecceecCCCcEEEEccCcccccCccccceEEEecc-----------chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence            778899999999999987543211     123333321           234455565555 788888887776666554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.09  E-value=6.6e-08  Score=89.99  Aligned_cols=199  Identities=21%  Similarity=0.303  Sum_probs=133.3

Q ss_pred             CceEEEEEccCCCeEEEEeeCCC---eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEE-EecCC--cEEEEECCCC
Q 013347          212 EQITALSWGPDGRYLASASYESS---SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFA-AKFDG--TFYLWETNTW  285 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~---~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~--~v~iwd~~~~  285 (444)
                      ..+..-+|+|+++.++..+...+   .+.++++.+++...+....+.-...+|+|||+.|+. ...|+  .|+++|+.++
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~  272 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK  272 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence            56778899999998877654322   599999999988887777777778999999999854 44455  5777788888


Q ss_pred             ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEE
Q 013347          286 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERL  364 (444)
Q Consensus       286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l  364 (444)
                      ....+....+.-..-.|+|+|++|++.++..+.-.++.+..            .......++... .-..-.|+|||++|
T Consensus       273 ~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~------------~g~~~~riT~~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         273 NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL------------EGSQVTRLTFSGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC------------CCCceeEeeccCCCCcCccCCCCCCEE
Confidence            76555555555568899999999999888777665555422            222223333222 22267899999999


Q ss_pred             EEEecCCCccccce--EEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC-------CCCceEEEEeccceeee
Q 013347          365 AVSYKGGDDIYKGL--IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF-------KQGPLLSVCWSSGFCCT  433 (444)
Q Consensus       365 ~~~~~d~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~-------~~~~~l~~~~~~g~i~~  433 (444)
                      +..+...     |.  |.+.|+.++...     ..+ .+........|+++|+.       ..+..|.....+|++..
T Consensus       341 ~~~~~~~-----g~~~i~~~~~~~~~~~-----~~l-t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         341 VFESSSG-----GQWDIDKNDLASGGKI-----RIL-TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             EEEeccC-----CceeeEEeccCCCCcE-----EEc-cccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence            9887432     44  667777665421     111 12223345567777764       23456666667777775

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.05  E-value=2.1e-07  Score=78.37  Aligned_cols=212  Identities=17%  Similarity=0.228  Sum_probs=128.5

Q ss_pred             EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEE
Q 013347          149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS  228 (444)
Q Consensus       149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  228 (444)
                      ++.+++ +++++.-.|..|.|=..+..=.. .+  +                ++ ..-+.. ...-..++||||+..||.
T Consensus         3 ~~~~~~-Gk~lAi~qd~~iEiRsa~Ddf~s-i~--~----------------kc-qVpkD~-~PQWRkl~WSpD~tlLa~   60 (282)
T PF15492_consen    3 LALSSD-GKLLAILQDQCIEIRSAKDDFSS-II--G----------------KC-QVPKDP-NPQWRKLAWSPDCTLLAY   60 (282)
T ss_pred             eeecCC-CcEEEEEeccEEEEEeccCCchh-ee--E----------------EE-ecCCCC-CchheEEEECCCCcEEEE
Confidence            455666 67888888888877655411000 00  0                00 111111 245678999999999999


Q ss_pred             EeeCCCeEEEEEcCCCCceeeecC-------CCCeEEEEEecC------CCeEEEEecCCcEEEEECCCCce------ec
Q 013347          229 ASYESSSFTIWDVAQGLGTPIRRG-------FGGLSILKWSPT------GDYFFAAKFDGTFYLWETNTWTS------EP  289 (444)
Q Consensus       229 ~~~d~~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~sp~------~~~l~~~~~d~~v~iwd~~~~~~------~~  289 (444)
                      +...| +|++||+.......+...       ...|..+.|.+-      ...|++-..+|.++-|-+..+..      ..
T Consensus        61 a~S~G-~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hs  139 (282)
T PF15492_consen   61 AESTG-TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHS  139 (282)
T ss_pred             EcCCC-eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEE
Confidence            99888 999999986544333221       245666766542      22466667788888777643221      11


Q ss_pred             --cc-cCCCceeEEEECCCCCEEEEEEcCCce----------EEEEEeecCCCCcC------CCcCCC--Ccc-----cc
Q 013347          290 --WS-STSGFVTGATWDPEGRMILLAFAGSLT----------LGSIHFASKPPSLD------AHLLPV--DLP-----DI  343 (444)
Q Consensus       290 --~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~----------~~~~~~~~~~~~~~------~~~~~~--~~~-----~~  343 (444)
                        +. .+...|.++.|+|..++|++++.....          +-.|++-+..+-..      ..+...  ...     ..
T Consensus       140 fsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~  219 (282)
T PF15492_consen  140 FSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF  219 (282)
T ss_pred             EEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence              11 346789999999999998887654333          33455543322111      111100  000     01


Q ss_pred             ccc--cc--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          344 VSL--TG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       344 ~~~--~~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +.+  .+  ...|..|..||||+.||+....      |.|.+|++.+-.+
T Consensus       220 ~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s------G~lsLW~iPsL~~  263 (282)
T PF15492_consen  220 KFFSRQGQEQDGIFKMSLSPDGSLLACIHFS------GSLSLWEIPSLRL  263 (282)
T ss_pred             eeeeccccCCCceEEEEECCCCCEEEEEEcC------CeEEEEecCcchh
Confidence            111  12  2289999999999999999998      9999999986443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.04  E-value=2.7e-08  Score=85.23  Aligned_cols=245  Identities=13%  Similarity=0.145  Sum_probs=165.5

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|++...-|....+++++.|.+++||--...++                        .+..+......+++++.+
T Consensus        21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------------------~wpsI~~~mP~~~~~~~y   76 (404)
T KOG1409|consen   21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------------------YWPSIYHYMPSPCSAMEY   76 (404)
T ss_pred             cCchhhhhhheeccCCCCeEEccccceeeeEEeccccc------------------------cCchhhhhCCCCceEeee
Confidence            58888899888888878899999999999997552221                        111222223478999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCC-----ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGL-----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS  294 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  294 (444)
                      +++.+.|+.+-..| ++.-+.+...-     ......|...+..+.|+-...++++.+.|..+.---.+.+...--....
T Consensus        77 ~~e~~~L~vg~~ng-tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~  155 (404)
T KOG1409|consen   77 VSESRRLYVGQDNG-TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE  155 (404)
T ss_pred             eccceEEEEEEecc-eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee
Confidence            99999999888887 99888765431     2234568899999999988889999998887654444444321000000


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ...+++.+.-.  + +.-+...+.+-..++..           .....+.++.+|. .+.++.|.|..+.|.+++.|   
T Consensus       156 ~~~t~~~~d~~--~-~fvGd~~gqvt~lr~~~-----------~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d---  218 (404)
T KOG1409|consen  156 TPASALQFDAL--Y-AFVGDHSGQITMLKLEQ-----------NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD---  218 (404)
T ss_pred             ccCCCCceeeE--E-EEecccccceEEEEEee-----------cCCceEEEEcCcccceEEEEEcCCCcEEEecccc---
Confidence            01111111111  2 22233444555555432           2456677888998 99999999999999999998   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                         ..+.+||+..++.+    ...+.+|...|..+...+.-+     -|-.+-.+|.|.+|++.-
T Consensus       219 ---~~vi~wdigg~~g~----~~el~gh~~kV~~l~~~~~t~-----~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  219 ---HSVIMWDIGGRKGT----AYELQGHNDKVQALSYAQHTR-----QLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ---CceEEEeccCCcce----eeeeccchhhhhhhhhhhhhe-----eeeeccCCCeEEEEeccc
Confidence               89999999876655    345678888888776654333     245556788888887653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=4.5e-07  Score=79.39  Aligned_cols=217  Identities=20%  Similarity=0.303  Sum_probs=138.0

Q ss_pred             EEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCe
Q 013347          148 VLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRY  225 (444)
Q Consensus       148 ~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~  225 (444)
                      ++.|.+..+.|+.+.. .+.|..|+...... .                         .+..   .....+++. ++++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~-------------------------~~~~---~~~~G~~~~~~~g~-   53 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-E-------------------------VIDL---PGPNGMAFDRPDGR-   53 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-E-------------------------EEES---SSEEEEEEECTTSE-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-E-------------------------EEec---CCCceEEEEccCCE-
Confidence            5789885567777665 58898888873211 1                         1111   236777787 5655 


Q ss_pred             EEEEeeCCCeEEEEEcCCCCceeeecC------CCCeEEEEEecCCCeEEEEecC--------CcEEEEECCCCceeccc
Q 013347          226 LASASYESSSFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPWS  291 (444)
Q Consensus       226 l~~~~~d~~~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~  291 (444)
                      |+.+...  .+.++|..+++...+...      ......+++.|+|++.++....        |.|..++.. ++...+.
T Consensus        54 l~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~  130 (246)
T PF08450_consen   54 LYVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA  130 (246)
T ss_dssp             EEEEETT--CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred             EEEEEcC--ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence            4455544  467779988866554432      2457889999999977765543        557788887 5655444


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                      ..-...+.++|+|+++.|+++......++.+++......+.      .......+.... ..-.+++..+|++.++....
T Consensus       131 ~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~  204 (246)
T PF08450_consen  131 DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG  204 (246)
T ss_dssp             EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred             cCcccccceEECCcchheeecccccceeEEEecccccccee------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence            44566799999999999988888888888888753211000      001111222222 36789999999987776655


Q ss_pred             CCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCC
Q 013347          371 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDK  415 (444)
Q Consensus       371 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~  415 (444)
                            +.|.+++.+ ++++     ..+.-....+++++|. ++.+
T Consensus       205 ------~~I~~~~p~-G~~~-----~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  205 ------GRIVVFDPD-GKLL-----REIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             ------TEEEEEETT-SCEE-----EEEE-SSSSEEEEEEESTTSS
T ss_pred             ------CEEEEECCC-ccEE-----EEEcCCCCCEEEEEEECCCCC
Confidence                  899999988 6655     3344444578899994 4433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=2.4e-09  Score=109.25  Aligned_cols=184  Identities=13%  Similarity=0.246  Sum_probs=137.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.++.-+|...+.++|+.||.+++|.+.. ++........-...|+.+.|+.+|+.+-++..||.+.+|.+. +   ..
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p---k~ 2284 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P---KP 2284 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C---cc
Confidence            588899999999999999999999999987 444444433444899999999999999999999999999987 1   11


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe--eCCCeEEEEEcCCCCce--eeecCCCCe
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGT--PIRRGFGGL  256 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~~i~iwd~~~~~~~--~~~~~~~~v  256 (444)
                                            ....+.|. ...+++.|-.  ..+++++  .|++.+.+||..-....  .-..|.+.+
T Consensus      2285 ----------------------~~s~qchn-k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2285 ----------------------YTSWQCHN-KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred             ----------------------eeccccCC-ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence                                  11234453 6777777755  4556553  45569999997543222  236788999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      +++++.|..+.|++|+.+|.|++||++..+.+ .+..         ++ ...+++.+ +..+.+++|++.
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~-ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTG-SSEGNIKIWRLS 2398 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeecc-CcccceEEEEcc
Confidence            99999999999999999999999999987763 2322         44 44555544 445778888864

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.02  E-value=5.5e-09  Score=88.15  Aligned_cols=252  Identities=13%  Similarity=0.148  Sum_probs=153.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-EE--ecCC------------CCCeEEEEEeeCCC--eEEEEec
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-IL--TSDS------------QRDVKVLEWRPNGG--RSLSVGC  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-~~--~~~~------------~~~v~~l~~s~~~~--~ll~~~~  163 (444)
                      -|+++.|...|.+|++|...|.|.+|.-+....... .+  ..+|            ...|..+.|..+++  .++.++.
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN  107 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN  107 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence            489999999999999998889999997765321111 11  1223            24688899977654  5888889


Q ss_pred             CCcEEEEecCCCCCcceee-----ccc----cccccc---cc---cCCCCceEEEE---Ee-eccCCCceEEEEEccCCC
Q 013347          164 KGGICIWAPSYPGNAASVR-----SGA----ASFLGA---LS---RGPGTRWTLVD---FL-RSQNGEQITALSWGPDGR  224 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~-----~~~----~~~~~~---~~---~~~~~~~~~~~---~~-~~~~~~~v~~~~~sp~~~  224 (444)
                      |.+|++|.+.... ...+.     .+-    .++...   +.   .+.........   .. ..| .-.+.++.|+.|..
T Consensus       108 dktiKlWKiyekn-lk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH-~yhiNSiS~NsD~e  185 (460)
T COG5170         108 DKTIKLWKIYEKN-LKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH-PYHINSISFNSDKE  185 (460)
T ss_pred             Cceeeeeeeeccc-chhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc-eeEeeeeeecCchh
Confidence            9999999987331 11111     110    111111   10   01112222222   12 234 36789999999998


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCc----eeeecCC-----CCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-----ec
Q 013347          225 YLASASYESSSFTIWDVAQGLG----TPIRRGF-----GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-----EP  289 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~----~~~~~~~-----~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-----~~  289 (444)
                      .++++..-  .|.+|+++-...    +-+.+|.     .-|++..|+|. .+.+...+..|.|++-|++....     ..
T Consensus       186 t~lSaDdL--rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TLLSADDL--RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             eeeeccce--eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            88876543  799999875421    2233332     45788999996 44566677789999999984322     11


Q ss_pred             ------------cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--------
Q 013347          290 ------------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--------  349 (444)
Q Consensus       290 ------------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  349 (444)
                                  +.+-...|..+.|+++|++|++-.-.  ++..|++..            ...+++++.-|        
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl--tvkiwDvnm------------~k~pikTi~~h~~l~~~l~  329 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL--TVKIWDVNM------------AKNPIKTIPMHCDLMDELN  329 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc--eEEEEeccc------------ccCCceeechHHHHHHHHH
Confidence                        11223467889999999999865332  333333322            12223333211        


Q ss_pred             -----C---ceeEEEECCCCCEEEEEecC
Q 013347          350 -----Q---GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       350 -----~---~v~~~~~spdg~~l~~~~~d  370 (444)
                           .   .-..+.||-|.+.+.+|+..
T Consensus       330 d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         330 DVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             hhhhccceeeeEEEEecCCcccccccccc
Confidence                 1   22457899999999998877

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=1.5e-06  Score=76.17  Aligned_cols=220  Identities=17%  Similarity=0.235  Sum_probs=133.6

Q ss_pred             EEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       104 ~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      ++.|.+ ++.++++-...+.|..|+..+ + ...... . .. ...+++...++.++++.. +.+.++|..+.       
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-~-~~~~~~-~-~~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g-------   70 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-G-EVEVID-L-PG-PNGMAFDRPDGRLYVADS-GGIAVVDPDTG-------   70 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTT-T-EEEEEE-S-SS-EEEEEEECTTSEEEEEET-TCEEEEETTTT-------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCC-C-eEEEEe-c-CC-CceEEEEccCCEEEEEEc-CceEEEecCCC-------
Confidence            578998 666666655788999999886 2 333222 1 22 677888833367777665 44455587632       


Q ss_pred             ccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccCCCeEEEEeeCC-------CeEEEEEcCCCCceeeecCC
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF  253 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~-------~~i~iwd~~~~~~~~~~~~~  253 (444)
                                      ++......  ..+.....+.+++.|+|++.++.....       +.|..++.. ++.......-
T Consensus        71 ----------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~  133 (246)
T PF08450_consen   71 ----------------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL  133 (246)
T ss_dssp             ----------------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE
T ss_pred             ----------------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc
Confidence                            11222222  121236789999999999666654331       156667766 4544455555


Q ss_pred             CCeEEEEEecCCCeEE-EEecCCcEEEEECCCCc--e---ecc---ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          254 GGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT--S---EPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~--~---~~~---~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .....++|+|+++.|+ +-+..+.|..|++....  .   ..+   ....+..-.+++..+|++.++ ....+.+..++-
T Consensus       134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va-~~~~~~I~~~~p  212 (246)
T PF08450_consen  134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA-DWGGGRIVVFDP  212 (246)
T ss_dssp             SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE-EETTTEEEEEET
T ss_pred             ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE-EcCCCEEEEECC
Confidence            6788999999999875 55667889999986322  2   112   222234788999999986664 344466666653


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCC-ceeEEEE-CCCCCEEEEEe
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW-DASGERLAVSY  368 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-spdg~~l~~~~  368 (444)
                                    .+..+..+.-.. .+++++| .++.+.|+..+
T Consensus       213 --------------~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  213 --------------DGKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             --------------TSCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             --------------CccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence                          333444444332 7899999 57777666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=3.5e-09  Score=99.10  Aligned_cols=247  Identities=13%  Similarity=0.212  Sum_probs=160.5

Q ss_pred             ceEEEEEecCC---CeEEEEECCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g---~~la~~~~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~  175 (444)
                      .|-.+.|+|..   .++++. ....-.+|++... .+.+....++|...|+.+.|+|....+++.+ -|-.+..||+..+
T Consensus        69 ~vad~qws~h~a~~~wiVst-s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVST-SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEec-CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            47788898854   345544 4455568998765 4455666689999999999999876665554 4899999999855


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCce--eeecC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT--PIRRG  252 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~  252 (444)
                      ..+.....                       ..+  .....++|+- ++..+++ +..+ .|.+||++.+...  .+..|
T Consensus       148 ~~p~ys~~-----------------------~w~--s~asqVkwnyk~p~vlas-shg~-~i~vwd~r~gs~pl~s~K~~  200 (1081)
T KOG0309|consen  148 HRPFYSTS-----------------------SWR--SAASQVKWNYKDPNVLAS-SHGN-DIFVWDLRKGSTPLCSLKGH  200 (1081)
T ss_pred             Ccceeeee-----------------------ccc--ccCceeeecccCcchhhh-ccCC-ceEEEeccCCCcceEEeccc
Confidence            43322111                       111  4567899987 4555544 4343 8999999987543  35556


Q ss_pred             CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCC
Q 013347          253 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKP  328 (444)
Q Consensus       253 ~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~  328 (444)
                      ...|..++|..- ...+.+.+.|++|+.||......  ........++....+-|-|+-.+.--.. +..+-..+..+..
T Consensus       201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d  280 (1081)
T KOG0309|consen  201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSD  280 (1081)
T ss_pred             ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchh
Confidence            677888888752 34578889999999999876543  3445567788888888876543322211 1222222222211


Q ss_pred             CCcCCCcCC--CCcccccccccCC-ceeEEEECCCCC----------EEEEEecCCCccccceEEEEEcCC
Q 013347          329 PSLDAHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGE----------RLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       329 ~~~~~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~----------~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .     .|.  ....++.++.||. .|..+-|-..+.          .|++-+.|      .++++|-+.+
T Consensus       281 ~-----e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD------~~lrlWpI~~  340 (1081)
T KOG0309|consen  281 L-----EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKD------QTLRLWPIDS  340 (1081)
T ss_pred             h-----hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecC------CceEeeeccH
Confidence            0     111  1346688899998 666666643222          58888888      9999998754

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=2.1e-08  Score=84.08  Aligned_cols=186  Identities=11%  Similarity=0.113  Sum_probs=126.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~~~  180 (444)
                      ..++.|++.+..++++-.+|.+.+-+.....-+.....+.|.-.++..+|+.....++.+ +.|+.+..||++.++.   
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence            568899999999999889999885544432222222336899999999998766666555 5569999999984331   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~~  258 (444)
                                          ..++..+-|. ..|.++.-+| .+.++++|+.|. .|++||.++. +.+.-..-.+.|+.
T Consensus       201 --------------------~i~~n~kvH~-~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~v~GGVWR  258 (339)
T KOG0280|consen  201 --------------------FIWHNSKVHT-SGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAKVGGGVWR  258 (339)
T ss_pred             --------------------eeeecceeee-cceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCccccceEE
Confidence                                1233344564 7899998886 678999999998 9999999854 33333344589999


Q ss_pred             EEEecCCC-eEEEEecCCcEEEEECCCCcee------ccccCCCceeEEEECCCCCEEEEE
Q 013347          259 LKWSPTGD-YFFAAKFDGTFYLWETNTWTSE------PWSSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       259 ~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~------~~~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      ++++|.-. .++.++.-+-.+|.+...+...      ....|.+-+....|......++++
T Consensus       259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC  319 (339)
T KOG0280|consen  259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC  319 (339)
T ss_pred             EEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence            99999533 3334444444777777654432      233566667777775554556654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.98  E-value=2.1e-08  Score=87.65  Aligned_cols=159  Identities=13%  Similarity=0.093  Sum_probs=111.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEeeCCCeEEEEecC---CcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~v~iw~~~~~~  176 (444)
                      ....+..++.++++|.+..+....++++....+ ....-...-....+++.|..+....+.+-.-   ..+.+|..... 
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            355677889999999998888888888876433 1111112233445566666655555555443   44555554421 


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFG  254 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~  254 (444)
                                               ....+-+|- ..++.++|+||+++|+++..|+ .|++-.......+.  ..+|+.
T Consensus       143 -------------------------~~~~~lGhv-Sml~dVavS~D~~~IitaDRDE-kIRvs~ypa~f~IesfclGH~e  195 (390)
T KOG3914|consen  143 -------------------------RCEPILGHV-SMLLDVAVSPDDQFIITADRDE-KIRVSRYPATFVIESFCLGHKE  195 (390)
T ss_pred             -------------------------Ccchhhhhh-hhhheeeecCCCCEEEEecCCc-eEEEEecCcccchhhhccccHh
Confidence                                     112244564 7899999999999999999998 99997776544332  567899


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                      -|..++.-+ ++.|++++.|++|++||+.+++..
T Consensus       196 FVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  196 FVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             heeeeeecc-CceeeecCCCCcEEEEecccCCcc
Confidence            999999875 456899999999999999998863

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.96  E-value=2.4e-07  Score=78.03  Aligned_cols=163  Identities=17%  Similarity=0.282  Sum_probs=107.5

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec------CCCCCeEEEEEeeCC------CeEEEEecCCcEEEE
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNG------GRSLSVGCKGGICIW  170 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~------~~~~~v~~l~~s~~~------~~ll~~~~dg~v~iw  170 (444)
                      +-++||||+.+||.+...|+|+++|+..  .....+..      .-...|..|.|.+..      ..|++...+|.++=|
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            5689999999999999999999999984  22222221      123466677775431      246777777777766


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEE--EEeeccCCCceEEEEEccCCCeEEEEeeCCC----------eEEE
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLV--DFLRSQNGEQITALSWGPDGRYLASASYESS----------SFTI  238 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----------~i~i  238 (444)
                      -+..+..                    ..+...  -.+..|....|.++.|+|.-++|+.|+....          -+.-
T Consensus       125 ~vs~gt~--------------------q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLta  184 (282)
T PF15492_consen  125 LVSVGTN--------------------QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTA  184 (282)
T ss_pred             EEEcccC--------------------CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceE
Confidence            6531111                    111111  2344455578999999999888887764221          2556


Q ss_pred             EEcCCCCc---------------------ee-----e----ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347          239 WDVAQGLG---------------------TP-----I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  287 (444)
Q Consensus       239 wd~~~~~~---------------------~~-----~----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  287 (444)
                      |.+-++..                     .+     +    ......|..|..||||+.|++...+|.|.+|++.+-+.
T Consensus       185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             EEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence            66533310                     00     0    11246788999999999999999999999999987554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.96  E-value=1.2e-07  Score=89.75  Aligned_cols=193  Identities=12%  Similarity=0.092  Sum_probs=118.2

Q ss_pred             CceEEEEEccCCCeEEEEe---eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----
Q 013347          212 EQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----  284 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~---~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----  284 (444)
                      .....++++|+|+++++.+   ..+.++..-+...........-. .+  -++.++|++...  .+++|.+.|.++    
T Consensus       235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~  309 (635)
T PRK02888        235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANA  309 (635)
T ss_pred             CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-HH--HHhhhCCCEEEE--CCCEEEEEECCccccC
Confidence            3556788999999998886   33334444443322111111100 00  133457887665  367899999998    


Q ss_pred             -CceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE
Q 013347          285 -WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER  363 (444)
Q Consensus       285 -~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  363 (444)
                       .+......-......+.++|||+++++++..+..+-++++......++..+.. ....+.+..-.......+|+++|..
T Consensus       310 ~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~-~~~vvaevevGlGPLHTaFDg~G~a  388 (635)
T PRK02888        310 GSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP-RDAVVAEPELGLGPLHTAFDGRGNA  388 (635)
T ss_pred             CcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc-cceEEEeeccCCCcceEEECCCCCE
Confidence             34444445667788999999999999998888888999886654434333311 1112222222224457889999987


Q ss_pred             EEEEecCCCccccceEEEEEcCC----------CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARR----------TPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ..+..-|      ..|..||+..          .+++....++.-.||......=.-.|||+|
T Consensus       389 ytslf~d------sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~  445 (635)
T PRK02888        389 YTTLFLD------SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKW  445 (635)
T ss_pred             EEeEeec------ceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCE
Confidence            7777777      8999999876          344433344444455444333345677776

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.90  E-value=2.3e-06  Score=85.37  Aligned_cols=291  Identities=13%  Similarity=0.205  Sum_probs=160.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.++.|..++..++.+..+|.|.+-|.++.  ..... ..-.+.|.+++||||+..++.....+++.+....-.. .. 
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~-i~-  144 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETL--ELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP-IA-  144 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEccccc--ceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc-hh-
Confidence            5899999999999999999999999988763  22222 2456789999999998777777777888775543000 00 


Q ss_pred             eeccccccccccccCCCCceEEEEEee--ccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecCCCCeE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRGFGGLS  257 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~~~~v~  257 (444)
                                            .+.+.  ....+....+-|-.....+ -|+ .| .....+....+ ......-...=.
T Consensus       145 ----------------------E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~g-r~~~~~~~~~ek~~~~~~~~~~~~  199 (1265)
T KOG1920|consen  145 ----------------------EKPLDADDERKSKFVNVGWGRKETQF-RGS-EG-RQAARQKIEKEKALEQIEQDDHKT  199 (1265)
T ss_pred             ----------------------ccccccccccccccceecccccceee-ecc-hh-hhcccccccccccccchhhccCCc
Confidence                                  00000  0001122233332221111 111 11 11111110000 000001122334


Q ss_pred             EEEEecCCCeEEEEe----cC-CcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          258 ILKWSPTGDYFFAAK----FD-GTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~----~d-~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      ++.|--||+++++..    .+ ++|++||.+ +.... -....+.-.+++|-|.|.++++...... ...+.+.....-.
T Consensus       200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNGL~  277 (1265)
T KOG1920|consen  200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNGLR  277 (1265)
T ss_pred             eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCCcc
Confidence            689999999998732    23 799999988 55432 2233444578999999999986543322 2233332211100


Q ss_pred             CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                             .+.-.-.+.... .+..++|+.++..||+-......   ..|++|-+.+-.-   .+-+.++-.....  +.|
T Consensus       278 -------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~NyhW---YLKq~l~~~~~~~--~~W  342 (1265)
T KOG1920|consen  278 -------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNYHW---YLKQELQFSQKAL--LMW  342 (1265)
T ss_pred             -------ccccccCCcccccchheeeecCCCCceeeeeccccc---ceEEEEEecCeEE---EEEEEEecccccc--ccc
Confidence                   011111112222 48999999999999984333221   5599999887433   2333344333332  788


Q ss_pred             eeCCCCCCCceEEEEeccceeeeeeeeeeccC
Q 013347          411 SFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL  442 (444)
Q Consensus       411 spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~~  442 (444)
                      +|--.+    .|-+-..+|.+..+.+.+.+..
T Consensus       343 ~p~~~~----~L~v~~~sG~~~v~~~~~~t~~  370 (1265)
T KOG1920|consen  343 DPVTEK----TLHVLRESGQRLVRDFAWTTDR  370 (1265)
T ss_pred             cCCCce----eEEEEecCCcEEEEEEEEeeec
Confidence            884333    2333337888888888776644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.90  E-value=6.6e-07  Score=77.71  Aligned_cols=215  Identities=15%  Similarity=0.120  Sum_probs=131.3

Q ss_pred             CeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          145 DVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ....++.+|+....++.+..  ....+||..+......+...                 .-+.|.+|       ..||+|
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----------------~gRHFyGH-------g~fs~d   61 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----------------PGRHFYGH-------GVFSPD   61 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----------------CCCEEecC-------EEEcCC
Confidence            34467888976777777764  45678998866655544433                 12234444       579999


Q ss_pred             CCeEEEEee-----CCCeEEEEEcCCC-Ccee-eecCCCCeEEEEEecCCCeEEEEe------------------cCCcE
Q 013347          223 GRYLASASY-----ESSSFTIWDVAQG-LGTP-IRRGFGGLSILKWSPTGDYFFAAK------------------FDGTF  277 (444)
Q Consensus       223 ~~~l~~~~~-----d~~~i~iwd~~~~-~~~~-~~~~~~~v~~~~~sp~~~~l~~~~------------------~d~~v  277 (444)
                      |++|++.-.     .| .|-|||...+ +.+. +..+.-....+.+.|||+.|+++.                  ++-.+
T Consensus        62 G~~LytTEnd~~~g~G-~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   62 GRLLYTTENDYETGRG-VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCEEEEeccccCCCcE-EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            999998633     34 8999999833 2222 233333456788999998887653                  12356


Q ss_pred             EEEECCCCcee---cc--ccCCCceeEEEECCCCCEEEEEEcCCceE----EEEEeecCCCCcCCCcCCCCccccccccc
Q 013347          278 YLWETNTWTSE---PW--SSTSGFVTGATWDPEGRMILLAFAGSLTL----GSIHFASKPPSLDAHLLPVDLPDIVSLTG  348 (444)
Q Consensus       278 ~iwd~~~~~~~---~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (444)
                      .+.|..+++..   .+  .-|...+..+++.++|..++ +....+..    -.+-+....    ..+.....+.-....-
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g----~~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRRG----GALRLLPAPEEQWRRL  215 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcCC----CcceeccCChHHHHhh
Confidence            67788888862   24  24777899999999988655 33211110    011111110    0000011111111111


Q ss_pred             CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347          349 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       349 ~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      ...+-+|+++++|.++++++--+     +.+.+||..++.++....
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrG-----g~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRG-----GRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCC-----CEEEEEECCCCCEeeccc
Confidence            22689999999999888777554     899999999998874433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.84  E-value=7.7e-07  Score=82.96  Aligned_cols=192  Identities=20%  Similarity=0.268  Sum_probs=121.9

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  216 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  216 (444)
                      .-...+..-+|+|++..++.....    ..+.+++++.+.....+.                       +.    +.-..
T Consensus       190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~~----g~~~~  242 (425)
T COG0823         190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------FN----GNNGA  242 (425)
T ss_pred             ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------cC----CccCC
Confidence            334567778999998887766442    358888888554433322                       22    33456


Q ss_pred             EEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC--cEEEEECCCCceeccc
Q 013347          217 LSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWS  291 (444)
Q Consensus       217 ~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~  291 (444)
                      .+|+|||+.|+.+....+  .|.++|+.++....+....+.-..-.|+|||++++-.+. .|  .|.++|++.+....+.
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT  322 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT  322 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence            789999999887764333  577778888775555555555557889999999976554 34  5777888887775555


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecC
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d  370 (444)
                      .....-....|+|+|++|+.....++. ..+...+..          .....+.+..........|.|+|+.+...+..
T Consensus       323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~----------~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         323 FSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLA----------SGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccC----------CCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            443433488999999999987643333 223322110          11112233322244566788999888776654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.83  E-value=1.1e-07  Score=83.19  Aligned_cols=157  Identities=12%  Similarity=0.128  Sum_probs=106.7

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-ee---eecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCC
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TP---IRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW  285 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~~---~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~  285 (444)
                      .+..+..+++++++|.+..+. ...++++..... ..   .......-.++.|..+......+.   +...+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            445667788999999888776 777777665432 11   122233344555555555554443   3445556666657


Q ss_pred             ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCE
Q 013347          286 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       286 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~  363 (444)
                      ......+|-+.+..++|+||+++|+++ +.+..+++.++..             ...+..+ -||. -|..++.-++ +.
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~Iita-DRDEkIRvs~ypa-------------~f~IesfclGH~eFVS~isl~~~-~~  207 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITA-DRDEKIRVSRYPA-------------TFVIESFCLGHKEFVSTISLTDN-YL  207 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEe-cCCceEEEEecCc-------------ccchhhhccccHhheeeeeeccC-ce
Confidence            778888999999999999999998865 5666666666522             2223333 3677 8899998765 45


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEE
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLIS  391 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~  391 (444)
                      |++++.|      ++|++||+.+++.+.
T Consensus       208 LlS~sGD------~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  208 LLSGSGD------KTLRLWDITSGKLLD  229 (390)
T ss_pred             eeecCCC------CcEEEEecccCCccc
Confidence            8888888      999999999988763

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.82  E-value=1.3e-05  Score=69.85  Aligned_cols=224  Identities=19%  Similarity=0.181  Sum_probs=138.1

Q ss_pred             EEEEEec-CCCeEEEEECCCe-EEEEEccCCCCceeEEecCCCCCeE-EEEEeeCCCeEEEEecC-----CcEEEEecCC
Q 013347          103 QGVSWHQ-HKHIVAFISGSTQ-VIVRDYEDSGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCK-----GGICIWAPSY  174 (444)
Q Consensus       103 ~~~~~sp-~g~~la~~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~ll~~~~d-----g~v~iw~~~~  174 (444)
                      ..++.+| ++..++++-.-|+ ..+||..+ +.....+......--+ .-.||+||+.|+++-.|     |.|-|||...
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            4678888 5566667766554 66788887 4444433221111111 25799998888887554     8999999971


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------------------CCCeE
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------------------ESSSF  236 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------------d~~~i  236 (444)
                                              .+..+..+..+. -....+.+.|||+.|+++..                  +. .+
T Consensus        87 ------------------------~~~ri~E~~s~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p-sL  140 (305)
T PF07433_consen   87 ------------------------GYRRIGEFPSHG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP-SL  140 (305)
T ss_pred             ------------------------CcEEEeEecCCC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC-ce
Confidence                                    123344555553 56778899999988877631                  11 45


Q ss_pred             EEEEcCCCCceee-----ecCCCCeEEEEEecCCCeEEEEecCC-------cEEEEECCCCcee-------ccccCCCce
Q 013347          237 TIWDVAQGLGTPI-----RRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSE-------PWSSTSGFV  297 (444)
Q Consensus       237 ~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~-------~~~~~~~~v  297 (444)
                      .+.|..+++.+..     ..|+-.++.+++.++|..++..-..|       -|-+++.... ..       ......+.+
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCce
Confidence            5667777765543     22567899999999998766554433       2444443331 11       122456789


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK  369 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~  369 (444)
                      -+|++++++.++++++-..+.+..|+..+             ...+.... -..+..++-.+++ ++++.+.
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------------g~~~~~~~-l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAAT-------------GRLLGSVP-LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCC-------------CCEeeccc-cCceeeeeecCCc-eEEeCCC
Confidence            99999999999998877766666665422             22221111 1146667766666 6666544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.82  E-value=8.2e-07  Score=73.77  Aligned_cols=175  Identities=10%  Similarity=0.096  Sum_probs=115.8

Q ss_pred             EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccc
Q 013347          114 VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS  193 (444)
Q Consensus       114 la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  193 (444)
                      +..++.|.++++.+++.+ ...... +...-.+.++++++|++.+++++....|..|.++.....               
T Consensus       131 ~~i~sndht~k~~~~~~~-s~~~~~-h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---------------  193 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGD-SNKFAV-HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---------------  193 (344)
T ss_pred             eeeccCCcceeEEEEecC-ccccee-eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce---------------
Confidence            445678889999988853 222222 122234889999999777777777799999999843321               


Q ss_pred             cCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee------eecCCCCeEEEEEecCCC-
Q 013347          194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP------IRRGFGGLSILKWSPTGD-  266 (444)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~------~~~~~~~v~~~~~sp~~~-  266 (444)
                              ..+.........=.+..|+.....+|++..|| ++.|||++......      ...|++.++.+.|++-|. 
T Consensus       194 --------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg-~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  194 --------IENIYEAPTSDHGFYNSFSENDLQFAVVFQDG-TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             --------eeeeEecccCCCceeeeeccCcceEEEEecCC-cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence                    11211112224456888999999999999998 99999998764321      234679999999998654 


Q ss_pred             -eEEEEecCCcEEEEECCCCceeccc--------cCCC-ceeEEEECCCCCEEEEEEc
Q 013347          267 -YFFAAKFDGTFYLWETNTWTSEPWS--------STSG-FVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       267 -~l~~~~~d~~v~iwd~~~~~~~~~~--------~~~~-~v~~~~~sp~g~~l~~~~~  314 (444)
                       +|+..-.-+.+.+.|+++.+...+.        .|.. .+....|+.++..+.+...
T Consensus       265 DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  265 DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             eEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence             3444444578999999987752211        2222 2666677777766665433

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.79  E-value=2.1e-05  Score=72.75  Aligned_cols=277  Identities=17%  Similarity=0.260  Sum_probs=141.8

Q ss_pred             ecCCCeEEEEE---------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          108 HQHKHIVAFIS---------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       108 sp~g~~la~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      |||+++++...         ..+.+.|+|+.+ ++...+.  .....+....|||+|+.+ +...++.|.+++.......
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-~~~~~l~--~~~~~~~~~~~sP~g~~~-~~v~~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET-GEITPLT--PPPPKLQDAKWSPDGKYI-AFVRDNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT-TEEEESS---EETTBSEEEE-SSSTEE-EEEETTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCC-CceEECc--CCccccccceeecCCCee-EEEecCceEEEECCCCCeE
Confidence            68888887743         346788999987 3222221  225678899999996555 4556789999987644222


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC------------------------
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------------------  234 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~------------------------  234 (444)
                      +....+...    +..+. -.|......    -+.-..+-|||||++|+....|..                        
T Consensus        77 ~lT~dg~~~----i~nG~-~dwvyeEEv----~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~  147 (353)
T PF00930_consen   77 QLTTDGEPG----IYNGV-PDWVYEEEV----FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR  147 (353)
T ss_dssp             ESES--TTT----EEESB---HHHHHHT----SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE
T ss_pred             Eecccccee----EEcCc-cceeccccc----cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc
Confidence            222222000    00000 000000000    011233455555555544433221                        


Q ss_pred             -----------eEEEEEcCCCCceeee------cCCCCeEEEEEecCCCeEEEEec--CC---cEEEEECCCCceecc--
Q 013347          235 -----------SFTIWDVAQGLGTPIR------RGFGGLSILKWSPTGDYFFAAKF--DG---TFYLWETNTWTSEPW--  290 (444)
Q Consensus       235 -----------~i~iwd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~--d~---~v~iwd~~~~~~~~~--  290 (444)
                                 .+.++|+.+++...+.      .....+..+.|.++++.|+..-.  +.   .+.++|..+++....  
T Consensus       148 YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~  227 (353)
T PF00930_consen  148 YPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE  227 (353)
T ss_dssp             --BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred             cCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence                       3455677666553322      12345788999999985544332  22   577778887765321  


Q ss_pred             ccCCCce---eEEEEC-CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE-EEECCCCCEE
Q 013347          291 SSTSGFV---TGATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGERL  364 (444)
Q Consensus       291 ~~~~~~v---~~~~~s-p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~spdg~~l  364 (444)
                      .....++   ....|. +++..++.....++.-..+.+..            .....+.++... .|.. +.|+++++.|
T Consensus       228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~------------~~~~~~~lT~G~~~V~~i~~~d~~~~~i  295 (353)
T PF00930_consen  228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL------------DGGKPRQLTSGDWEVTSILGWDEDNNRI  295 (353)
T ss_dssp             EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET------------TSSEEEESS-SSS-EEEEEEEECTSSEE
T ss_pred             ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc------------cccceeccccCceeecccceEcCCCCEE
Confidence            1223332   345554 77776666555666555544432            333344566555 6755 6789998877


Q ss_pred             EEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          365 AVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ...+...+ .....|+.-+++ .+...      .+......-..+.|||||+|
T Consensus       296 yf~a~~~~-p~~r~lY~v~~~~~~~~~------~LT~~~~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  296 YFTANGDN-PGERHLYRVSLDSGGEPK------CLTCEDGDHYSASFSPDGKY  341 (353)
T ss_dssp             EEEESSGG-TTSBEEEEEETTETTEEE------ESSTTSSTTEEEEE-TTSSE
T ss_pred             EEEecCCC-CCceEEEEEEeCCCCCeE------eccCCCCCceEEEECCCCCE
Confidence            65544321 122456666666 44433      23322222258999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=9.6e-08  Score=86.91  Aligned_cols=161  Identities=14%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCce----eEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA----CIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~----~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      .|+.++--.+.+-+++++.|.+|++|.+...+...    +.+ ...|..+|.++.|-.+.++  .++.||.|.+||.-.+
T Consensus       737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~--i~ScD~giHlWDPFig  814 (1034)
T KOG4190|consen  737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRS--IASCDGGIHLWDPFIG  814 (1034)
T ss_pred             HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccce--eeeccCcceeeccccc
Confidence            36666666677788999999999999998653222    222 2579999999999988433  4457999999997643


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEE-eeCCCeEEEEEcCCCCcee---e
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASA-SYESSSFTIWDVAQGLGTP---I  249 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~-~~d~~~i~iwd~~~~~~~~---~  249 (444)
                      .....+...                        ...+.+..+..-+  +...+..+ +... +|+++|.+..+...   .
T Consensus       815 r~Laq~~da------------------------pk~~a~~~ikcl~nv~~~iliAgcsaeS-TVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  815 RLLAQMEDA------------------------PKEGAGGNIKCLENVDRHILIAGCSAES-TVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             chhHhhhcC------------------------cccCCCceeEecccCcchheeeeccchh-hheeeecccccceeeEEe
Confidence            333222211                        0012233333323  34444444 5565 99999999876443   1


Q ss_pred             e---cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347          250 R---RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       250 ~---~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                      .   ....-+++++..+.|+.++++-.+|.|.+.|.++|+..
T Consensus       870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence            1   12356889999999999999999999999999999863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.73  E-value=2.4e-05  Score=73.30  Aligned_cols=260  Identities=14%  Similarity=0.065  Sum_probs=137.9

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ++..+++++.++.+..+|..+ ++......  ..+.+.+.-... ++.+++...++.+..||.++++.........    
T Consensus       104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~--~~~~~~~~p~v~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~----  175 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAED-GKELWRAK--LSSEVLSPPLVA-NGLVVVRTNDGRLTALDAATGERLWTYSRVT----  175 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCC-CcEeeeec--cCceeecCCEEE-CCEEEEECCCCeEEEEEcCCCceeeEEccCC----
Confidence            466777788899999999877 54443322  222232211112 3577777778999999987554332221110    


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----C------e-E
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-----G------L-S  257 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~------v-~  257 (444)
                                  ....+..    . .+.... + ..++.+..++ .+..+|.++++.........     .      + .
T Consensus       176 ------------~~~~~~~----~-~sp~~~-~-~~v~~~~~~g-~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~  235 (377)
T TIGR03300       176 ------------PALTLRG----S-ASPVIA-D-GGVLVGFAGG-KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG  235 (377)
T ss_pred             ------------CceeecC----C-CCCEEE-C-CEEEEECCCC-EEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence                        0000000    0 011111 2 3566677776 89999998886553221110     0      0 1


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ...+  .+..++.++.+|.++.||.++++......... ...+.  ..+..++++ ..++.+..++..+..     .+|.
T Consensus       236 ~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~-~~~G~l~~~d~~tG~-----~~W~  304 (377)
T TIGR03300       236 DPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVT-DADGVVVALDRRSGS-----ELWK  304 (377)
T ss_pred             ccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEE-CCCCeEEEEECCCCc-----EEEc
Confidence            1112  35577778889999999999987643222211 12222  234556544 345667777653211     0111


Q ss_pred             CCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc-ceeeeeCCCC
Q 013347          338 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK-PVAFSFHDKF  416 (444)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~-~v~~spdg~~  416 (444)
                      ..     .+.+. ...+...  .+..|++++.+      |.|+++|.++++++.     .++.+...+. +.++. ++  
T Consensus       305 ~~-----~~~~~-~~ssp~i--~g~~l~~~~~~------G~l~~~d~~tG~~~~-----~~~~~~~~~~~sp~~~-~~--  362 (377)
T TIGR03300       305 ND-----ELKYR-QLTAPAV--VGGYLVVGDFE------GYLHWLSREDGSFVA-----RLKTDGSGIASPPVVV-GD--  362 (377)
T ss_pred             cc-----cccCC-ccccCEE--ECCEEEEEeCC------CEEEEEECCCCCEEE-----EEEcCCCccccCCEEE-CC--
Confidence            00     01111 1112222  45688888877      999999999988762     3333332222 22222 22  


Q ss_pred             CCCceEEEEeccceeeee
Q 013347          417 KQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       417 ~~~~~l~~~~~~g~i~~~  434 (444)
                          .|-++..+|.|+.|
T Consensus       363 ----~l~v~~~dG~l~~~  376 (377)
T TIGR03300       363 ----GLLVQTRDGDLYAF  376 (377)
T ss_pred             ----EEEEEeCCceEEEe
Confidence                35677789998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=1.7e-07  Score=79.37  Aligned_cols=228  Identities=11%  Similarity=0.155  Sum_probs=128.7

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC-CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ...+.|+++.|...|.++.++...|.|.+|.-+... ....+.+.-        .+.+..+..+..+.-  ...|..+.|
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF--------Qshe~EFDYLkSlei--eEKin~I~w   93 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF--------QSHELEFDYLKSLEI--EEKINAIEW   93 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh--------cccccchhhhhhccH--HHHhhheee
Confidence            445679999999886665555556999998765221 111111100        000000111111111  246788888


Q ss_pred             ccCC--CeEEEEeeCCCeEEEEEcCCCCc------------------------------------------ee--eecCC
Q 013347          220 GPDG--RYLASASYESSSFTIWDVAQGLG------------------------------------------TP--IRRGF  253 (444)
Q Consensus       220 sp~~--~~l~~~~~d~~~i~iwd~~~~~~------------------------------------------~~--~~~~~  253 (444)
                      -.++  ..++..+.|. +|++|.+.....                                          .+  --.|.
T Consensus        94 ~~~t~r~hFLlstNdk-tiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170          94 FDDTGRNHFLLSTNDK-TIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             ecCCCcceEEEecCCc-eeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence            7643  3566667787 999998754300                                          00  01244


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----eccccCC-----CceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTS-----GFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~-----~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      ..+.++.|+.|...++++. |=.|.+|++.-...    ..+.+|.     .-|++..|+|..-.++.-++..+.+...++
T Consensus       173 yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         173 YHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            4577889988888777654 67899998864332    2233333     347899999976655544445566777666


Q ss_pred             ecCCCCcC-CCcCC--CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          325 ASKPPSLD-AHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       325 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      +....... ..+..  ..+....-+.+-. .|..+.|+++|+|+++-..       .++++||.+..
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-------ltvkiwDvnm~  311 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-------LTVKIWDVNMA  311 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-------ceEEEEecccc
Confidence            52110000 00000  0111111122222 6889999999999987655       69999998753

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.72  E-value=2.2e-06  Score=81.40  Aligned_cols=250  Identities=15%  Similarity=0.154  Sum_probs=151.7

Q ss_pred             CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347          144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  223 (444)
                      ..-.++.|+|.|  |++-++...|.+-|...-                         +.+..+..|. ..|+.+.|.|..
T Consensus        16 sN~~A~Dw~~~G--LiAygshslV~VVDs~s~-------------------------q~iqsie~h~-s~V~~VrWap~~   67 (1062)
T KOG1912|consen   16 SNRNAADWSPSG--LIAYGSHSLVSVVDSRSL-------------------------QLIQSIELHQ-SAVTSVRWAPAP   67 (1062)
T ss_pred             ccccccccCccc--eEEEecCceEEEEehhhh-------------------------hhhhccccCc-cceeEEEeccCC
Confidence            335678899984  777777788888887622                         2444556665 889999997632


Q ss_pred             ------------CeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEec---CC-CeEEEEecCCcEEEEECCCCc
Q 013347          224 ------------RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSP---TG-DYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       224 ------------~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp---~~-~~l~~~~~d~~v~iwd~~~~~  286 (444)
                                  -.|+++...| .|.+||+..+..+. +..+..++..++|-+   +. ..|++-.....+.+|+..+|+
T Consensus        68 ~p~~llS~~~~~lliAsaD~~G-rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~  146 (1062)
T KOG1912|consen   68 SPRDLLSPSSSQLLIASADISG-RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE  146 (1062)
T ss_pred             CchhccCccccceeEEeccccC-cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc
Confidence                        1355555666 99999999876654 555678889999876   44 345666667899999999998


Q ss_pred             eeccc-cCCCceeEEEECCC-CCEEEEEEcCCceEEEEEeec-CCCCcCCCcCCCCcc--c-----cccccc-------C
Q 013347          287 SEPWS-STSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLP--D-----IVSLTG-------S  349 (444)
Q Consensus       287 ~~~~~-~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-----~~~~~~-------~  349 (444)
                      ..... .......|+.+.|- .+.+.+.+.+ +.+-..++-. ..+...++....+..  .     ..+..+       .
T Consensus       147 k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~-g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~  225 (1062)
T KOG1912|consen  147 KFWKYDYSHEILSCFRVDPFDSRHFCVLGSK-GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPA  225 (1062)
T ss_pred             eeeccccCCcceeeeeeCCCCcceEEEEccC-ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCc
Confidence            74433 33344567888884 4455444333 3343333321 111111111111000  0     000000       0


Q ss_pred             C-----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE
Q 013347          350 Q-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV  424 (444)
Q Consensus       350 ~-----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~  424 (444)
                      +     ..-.++|+|.-+.++.....      ..+.|+|++-...+     ..+.-..+.+.-+.|-||++-.   .|-+
T Consensus       226 sa~fity~a~faf~p~~rn~lfi~~p------rellv~dle~~~~l-----~vvpier~~akfv~vlP~~~rd---~Lfc  291 (1062)
T KOG1912|consen  226 SAYFITYCAQFAFSPHWRNILFITFP------RELLVFDLEYECCL-----AVVPIERGGAKFVDVLPDPRRD---ALFC  291 (1062)
T ss_pred             chhHHHHHHhhhcChhhhceEEEEec------cceEEEcchhhcee-----EEEEeccCCcceeEeccCCCcc---eEEE
Confidence            0     12346788876544444444      77999999976554     3334345566678888998753   4556


Q ss_pred             Eeccceeeeeeee
Q 013347          425 CWSSGFCCTYPLI  437 (444)
Q Consensus       425 ~~~~g~i~~~~~~  437 (444)
                      .-+||++.++-.-
T Consensus       292 lH~nG~ltirvrk  304 (1062)
T KOG1912|consen  292 LHSNGRLTIRVRK  304 (1062)
T ss_pred             EecCCeEEEEEee
Confidence            6789999877543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.71  E-value=1.2e-07  Score=97.33  Aligned_cols=193  Identities=12%  Similarity=0.168  Sum_probs=139.7

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      .+-..|.++.=+|....+++++.||.|++|....+..+....+.                         ....|+.+.|+
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------GNSRVTRSRFN 2260 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------Ccchhhhhhhc
Confidence            55667888888888789999999999999998754443322221                         23789999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCCcee--ccccCCC
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTSE--PWSSTSG  295 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~~--~~~~~~~  295 (444)
                      .+|+.+..+..|| .+.+|...........-|......+.|-.  ..+++++   .++.+.+||.--....  .-..|.+
T Consensus      2261 ~qGnk~~i~d~dg-~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDG-DLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred             ccCCceeeeccCC-ceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence            9999999999998 99999988444444556777777888764  5566654   4679999997644332  2268999


Q ss_pred             ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347          296 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       296 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      .++++++.|..+.+++| +.++.+..|++..             .+.+++++    .    +. ...++++++..     
T Consensus      2338 gaT~l~~~P~~qllisg-gr~G~v~l~D~rq-------------rql~h~~~----~----~~-~~~~f~~~ss~----- 2389 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISG-GRKGEVCLFDIRQ-------------RQLRHTFQ----A----LD-TREYFVTGSSE----- 2389 (2439)
T ss_pred             CceEEEEcCcceEEEec-CCcCcEEEeehHH-------------HHHHHHhh----h----hh-hhheeeccCcc-----
Confidence            99999999999988865 4456666666531             12222222    1    44 56789999888     


Q ss_pred             cceEEEEEcCCCCeE
Q 013347          376 KGLIAIYDARRTPLI  390 (444)
Q Consensus       376 d~~i~vwd~~~~~~~  390 (444)
                       |.|+||++..-.++
T Consensus      2390 -g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2390 -GNIKIWRLSEFGLL 2403 (2439)
T ss_pred             -cceEEEEccccchh
Confidence             99999999875443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.67  E-value=5.2e-07  Score=74.57  Aligned_cols=147  Identities=14%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-----CCcEEEEecCCCCCcceeecc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPSYPGNAASVRSG  184 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~~~~~~~~~~~~  184 (444)
                      .++.++++..||.+.+++.+............|.+.. +.+....+..+.+.+.     -+..++|+++..+....-   
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~---  175 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS---  175 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeeccccccccccc---
Confidence            4567888999999999988752111111111222221 1222333233333221     255666666522111000   


Q ss_pred             ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEeeCCCeEEEEEcCCCCce--eeecCCCCeEEEEE
Q 013347          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKW  261 (444)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~  261 (444)
                                           ..  ....|++++-+|..+.++ +|+.|| .+-+||.+.....  .+..|+.+++.+-|
T Consensus       176 ---------------------~~--~~~~v~~l~~hp~qq~~v~cgt~dg-~~~l~d~rn~~~p~S~l~ahk~~i~eV~F  231 (319)
T KOG4714|consen  176 ---------------------KK--ALDAVTALCSHPAQQHLVCCGTDDG-IVGLWDARNVAMPVSLLKAHKAEIWEVHF  231 (319)
T ss_pred             ---------------------cc--ccccchhhhCCcccccEEEEecCCC-eEEEEEcccccchHHHHHHhhhhhhheec
Confidence                                 00  124589999999665554 555555 9999999987433  25678999999999


Q ss_pred             ec-CCCeEEEEecCCcEEEEECCC
Q 013347          262 SP-TGDYFFAAKFDGTFYLWETNT  284 (444)
Q Consensus       262 sp-~~~~l~~~~~d~~v~iwd~~~  284 (444)
                      +| ++..|+++++||.+..||..+
T Consensus       232 Hpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  232 HPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cCCCchheeEecCCCcEEEEcCCC
Confidence            99 578899999999999999876

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.62  E-value=1.5e-05  Score=73.69  Aligned_cols=254  Identities=19%  Similarity=0.300  Sum_probs=136.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecC-------C---------CCCeEEEEEeeCCCeEEEEecC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-------S---------QRDVKVLEWRPNGGRSLSVGCK  164 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-------~---------~~~v~~l~~s~~~~~ll~~~~d  164 (444)
                      .+....|||+|+.+|... ++.|.+++..++ ....+...+       -         -+.-..+-||||+++|+....|
T Consensus        44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             TBSEEEE-SSSTEEEEEE-TTEEEEESSTTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccceeecCCCeeEEEe-cCceEEEECCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            477899999999999975 678999987753 222222112       0         1123568899999998888765


Q ss_pred             -CcEEEEecC---CCCC----cceee---cccccccccc--ccCCCCceEEEEEe---eccCCCceEEEEEccCCCeEEE
Q 013347          165 -GGICIWAPS---YPGN----AASVR---SGAASFLGAL--SRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRYLAS  228 (444)
Q Consensus       165 -g~v~iw~~~---~~~~----~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~  228 (444)
                       ..|..+.+.   ....    ...+.   .|...+...+  ..-..++...+...   ... ...+..+.|.++++.|+.
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~-~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ-DYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS-SEEEEEEEEEETTEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC-ccCcccceecCCCcEEEE
Confidence             555444432   2211    11111   1111010010  00011111111111   122 357889999999995554


Q ss_pred             EeeCC--C--eEEEEEcCCCCceeeec--CCCC---eEEEEEe-cCCCeE-EEEecCC--cEEEEECCCCceeccccCCC
Q 013347          229 ASYES--S--SFTIWDVAQGLGTPIRR--GFGG---LSILKWS-PTGDYF-FAAKFDG--TFYLWETNTWTSEPWSSTSG  295 (444)
Q Consensus       229 ~~~d~--~--~i~iwd~~~~~~~~~~~--~~~~---v~~~~~s-p~~~~l-~~~~~d~--~v~iwd~~~~~~~~~~~~~~  295 (444)
                      .-.++  +  .+.++|..++....+..  ....   .....|. +++..+ .....+|  .|.+++..++....+....-
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~  280 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDW  280 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCce
Confidence            43322  1  56677887776654332  2222   2355554 666555 4444666  57777888887777776667


Q ss_pred             ceeE-EEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCCce-eEEEECCCCCEEEEEec
Q 013347          296 FVTG-ATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI-EKIAWDASGERLAVSYK  369 (444)
Q Consensus       296 ~v~~-~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~spdg~~l~~~~~  369 (444)
                      .|.. +.|+++++.|++.+..+    ..++.+.+.             ....++.++..... ..+.|||+|++++....
T Consensus       281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~-------------~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD-------------SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT-------------ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             eecccceEcCCCCEEEEEecCCCCCceEEEEEEeC-------------CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            7754 77899998888766542    234444431             13344455544433 48999999999886654


Q ss_pred             C
Q 013347          370 G  370 (444)
Q Consensus       370 d  370 (444)
                      +
T Consensus       348 ~  348 (353)
T PF00930_consen  348 G  348 (353)
T ss_dssp             S
T ss_pred             C
Confidence            3

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=3.8e-07  Score=78.38  Aligned_cols=181  Identities=10%  Similarity=0.075  Sum_probs=122.4

Q ss_pred             EEcc--CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----ecc
Q 013347          218 SWGP--DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPW  290 (444)
Q Consensus       218 ~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~  290 (444)
                      +|+-  .|-+ ++.+.+- .|-+-|++++....+. .++.|.++.|.-.++++..|+.+|.|..+|++.+..     ...
T Consensus       218 awSlni~gyh-fs~G~sq-qv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQ-QVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             hhhhccceee-ecccccc-eeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            6653  3334 4445554 7999999998665554 678999999998899999999999999999987632     334


Q ss_pred             ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEE
Q 013347          291 SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAV  366 (444)
Q Consensus       291 ~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~  366 (444)
                      .-|++.|+++..-. ++++|++ ++-++++..|+++-..          ....+.+..||.   .-.-+...+....+++
T Consensus       295 lyh~Ssvtslq~Lq~s~q~Lma-S~M~gkikLyD~R~~K----------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s  363 (425)
T KOG2695|consen  295 LYHDSSVTSLQILQFSQQKLMA-SDMTGKIKLYDLRATK----------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS  363 (425)
T ss_pred             EEcCcchhhhhhhccccceEee-ccCcCceeEeeehhhh----------cccceeeeecccccccccccccccccceEEE
Confidence            57899999998776 6666664 3445555555543210          223467777875   2223445677788888


Q ss_pred             EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCCCCCC
Q 013347          367 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKFKQG  419 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~~~~~  419 (444)
                      ++.|      ...|||.++.+.+....+. .....+..+.+++|. .+|+...+
T Consensus       364 ~GdD------cytRiWsl~~ghLl~tipf-~~s~~e~d~~sv~~~sr~~k~~~g  410 (425)
T KOG2695|consen  364 VGDD------CYTRIWSLDSGHLLCTIPF-PYSASEVDIPSVAFDSRLGKARGG  410 (425)
T ss_pred             ccCe------eEEEEEecccCceeeccCC-CCccccccccceehhcccccccCC
Confidence            8877      8999999999988743332 222334457778874 34555333

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=6e-08  Score=88.22  Aligned_cols=163  Identities=12%  Similarity=0.164  Sum_probs=112.4

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|...|..++--.+.+.+++++.|.+|++|.++..+....                  .-.+.-+++.|. .+|.++.|
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~------------------tsaCQfTY~aHk-k~i~~igf  792 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIG------------------TSACQFTYQAHK-KPIHDIGF  792 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccc------------------cceeeeEhhhcc-Ccccceee
Confidence            48999999887766768999999999999999984332211                  112556778886 89999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eec--CCCCeEEEEEec--CCCeEEEE-ecCCcEEEEECCCCcee-c---
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRR--GFGGLSILKWSP--TGDYFFAA-KFDGTFYLWETNTWTSE-P---  289 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~--~~~~v~~~~~sp--~~~~l~~~-~~d~~v~iwd~~~~~~~-~---  289 (444)
                      -.+-++++++  |+ .|.+||.--+.... +..  ..+.+..+..-+  +...++++ +...+|+++|.+..+.. .   
T Consensus       793 L~~lr~i~Sc--D~-giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  793 LADLRSIASC--DG-GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             eeccceeeec--cC-cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence            9988888754  66 89999976665433 211  123333333334  34445444 67889999999987652 1   


Q ss_pred             --cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          290 --WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       290 --~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                        -.+...-+++++..+.|++++++-++ +.+..++.+
T Consensus       870 cna~~Pna~~R~iaVa~~GN~lAa~LSn-Gci~~LDaR  906 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVADKGNKLAAALSN-GCIAILDAR  906 (1034)
T ss_pred             ccCCCCchheeEEEeccCcchhhHHhcC-CcEEEEecC
Confidence              12455678999999999999976554 455555543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.56  E-value=3.8e-07  Score=54.02  Aligned_cols=39  Identities=33%  Similarity=0.772  Sum_probs=35.9

Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  240 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd  240 (444)
                      |++...+++|. ..|.+++|+|++++|++++.|+ .|++||
T Consensus         1 g~~~~~~~~h~-~~i~~i~~~~~~~~~~s~~~D~-~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHS-SSINSIAWSPDGNFLASGSSDG-TIRVWD   39 (39)
T ss_dssp             EEEEEEEESSS-SSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred             CeEEEEEcCCC-CcEEEEEEecccccceeeCCCC-EEEEEC
Confidence            45778899996 8999999999999999999998 999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.56  E-value=4.2e-05  Score=72.42  Aligned_cols=198  Identities=13%  Similarity=0.090  Sum_probs=118.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~  180 (444)
                      |.=-+++..+++++.|+..|.+++|+-..+ .....-..+..+.+..+..+++ .++++++. .|.|.++-+........
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTG-EMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCch-hhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCCCcc
Confidence            444567778999999999999999998863 2222221234455566677888 55655555 58888888875332221


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-----CceeeecCCCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGG  255 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~~~~~~~~~~  255 (444)
                      .                    ........+...|++++|++++..+++|...| +|.+-.+...     ....+....+.
T Consensus       114 ~--------------------~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~G-kv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen  114 D--------------------YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQG-KVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             e--------------------eeccccccCCceEEEEEecccccEEeecCCCc-eEEEEEechhhhhccccceeeccCcc
Confidence            1                    11122221247999999999999999999887 9998887762     22334455677


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCCC-ceeEEEECCC----CCEEEEEEcCCceEEEEEee
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSG-FVTGATWDPE----GRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~-~v~~~~~sp~----g~~l~~~~~~~~~~~~~~~~  325 (444)
                      |..+... ++..|++...  ...+++++.++..++-  ..++ .-...+|-|.    .+-.++++.-+.++|..++.
T Consensus       173 IVQlD~~-q~~LLVStl~--r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~  246 (726)
T KOG3621|consen  173 IVQLDYL-QSYLLVSTLT--RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFA  246 (726)
T ss_pred             eEEeecc-cceehHhhhh--hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecc
Confidence            7777665 4444444432  2455666654432211  1111 1234445443    23333455555666666653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.54  E-value=1.4e-07  Score=87.57  Aligned_cols=203  Identities=15%  Similarity=0.205  Sum_probs=134.5

Q ss_pred             ceEEEEEecCC--CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecC
Q 013347          101 DLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~g--~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~  173 (444)
                      .+.|++++-+.  ..+++|..+|.|.+-.+......-...+.+|...+++++|++-....+++|.|     ..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            47788877644  57888999999999988765333344556889999999999865667777654     679999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF  253 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~  253 (444)
                      ..-..         +        -..|..    .+.......+++|-.+.+.+.+|.... .+.++|++........-..
T Consensus       138 s~ltv---------P--------ke~~~f----s~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~~~~~svnT  195 (783)
T KOG1008|consen  138 SLLTV---------P--------KESPLF----SSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSLDSVSSVNT  195 (783)
T ss_pred             cccCC---------C--------cccccc----ccccccCccccccccCcchhhcccccc-hhhhhhhhhhhhhhhhhhh
Confidence            43110         0        001111    111124556888988888888888886 9999999854333222233


Q ss_pred             CCeEEEEEec-CCCeEEEEecCCcEEEEEC-CCCce--eccc----cCCCceeEEEECCCCC-EEEEEEcCCceEEEEEe
Q 013347          254 GGLSILKWSP-TGDYFFAAKFDGTFYLWET-NTWTS--EPWS----STSGFVTGATWDPEGR-MILLAFAGSLTLGSIHF  324 (444)
Q Consensus       254 ~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~-~~~~~--~~~~----~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~~  324 (444)
                      ..+..+.++| .+.++++-. |+.|.+||. ++-+.  +.+.    .....+..++|+|... .+++...+.++++.+.+
T Consensus       196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            4566778888 778887766 999999994 33222  1111    1223589999999654 34445566677777766


Q ss_pred             ec
Q 013347          325 AS  326 (444)
Q Consensus       325 ~~  326 (444)
                      ..
T Consensus       275 ~~  276 (783)
T KOG1008|consen  275 CV  276 (783)
T ss_pred             cc
Confidence            54

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=1.8e-07  Score=89.89  Aligned_cols=209  Identities=12%  Similarity=0.184  Sum_probs=135.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~  178 (444)
                      ..+|++|+-+.+.|+.|+..|.|+++++.++ ...... .+|..+|+-+.=+.+|..+++.+.-  --..+|+.......
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCc-cccccc-cccccccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence            5899999999999999999999999999984 333333 6999999999999998888777664  35679998731111


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-e----cCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-R----RGF  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~----~~~  253 (444)
                                                   .|.-..-.++.|+..-..-+.|.... ...+||++++..... .    ...
T Consensus      1181 -----------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1181 -----------------------------RHSFDEDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             -----------------------------cccccccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhhh
Confidence                                         11123345788876544434444433 799999999864431 2    122


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      ..-.+..|+|+..+++   .||  .+||.+..+... +.... .--.-.|+|.|..++.-    ..+|.++         
T Consensus      1231 y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIIN----SEIwD~R--------- 1291 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIIN----SEIWDMR--------- 1291 (1516)
T ss_pred             hhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEee----chhhhhH---------
Confidence            3336788999988776   455  589999875532 22222 22334699999988864    2233333         


Q ss_pred             CCcCCCCcccccccccCCceeEEEECCCCCEEEEE
Q 013347          333 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  367 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  367 (444)
                            +...+++...- .-..+.|+..|..+...
T Consensus      1292 ------TF~lLh~VP~L-dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1292 ------TFKLLHSVPSL-DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             ------HHHHHhcCccc-cceEEEeccCccchhhh
Confidence                  22222222211 23467788888766544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.6e-06  Score=77.29  Aligned_cols=215  Identities=11%  Similarity=0.073  Sum_probs=140.9

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      -|.+.|+.+.-... ..++.++.||.++.|.-....-                      ...+..++.|. ..+.+++.+
T Consensus         7 mhrd~i~hv~~tka-~fiiqASlDGh~KFWkKs~isG----------------------vEfVKhFraHL-~~I~sl~~S   62 (558)
T KOG0882|consen    7 MHRDVITHVFPTKA-KFIIQASLDGHKKFWKKSRISG----------------------VEFVKHFRAHL-GVILSLAVS   62 (558)
T ss_pred             cccceeeeEeeehh-heEEeeecchhhhhcCCCCccc----------------------eeehhhhHHHH-HHHHhhhcc
Confidence            47777887765555 7888999999999998652111                      12344566675 788899999


Q ss_pred             cCCCeEEEEee-CCCeEEEEEcCCCCceeeecCCCCeEEEEEec-CCC---eE-EEEecCCcEEEEECCCCcee---ccc
Q 013347          221 PDGRYLASASY-ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGD---YF-FAAKFDGTFYLWETNTWTSE---PWS  291 (444)
Q Consensus       221 p~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~---~l-~~~~~d~~v~iwd~~~~~~~---~~~  291 (444)
                      .++..+.+.+. |. .++++|+++-..............+.|.- .|.   .+ ++.-.++.+.++|-....++   ...
T Consensus        63 ~dg~L~~Sv~d~Dh-s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk  141 (558)
T KOG0882|consen   63 YDGWLFRSVEDPDH-SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK  141 (558)
T ss_pred             ccceeEeeccCccc-ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence            99999999777 87 99999998765543333222222233332 221   33 33445789999998876542   334


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC---C-CcCCCCc-c-cccccccCCceeEEEECCCCCEEE
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD---A-HLLPVDL-P-DIVSLTGSQGIEKIAWDASGERLA  365 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~-~-~~~~~~~~~~v~~~~~spdg~~l~  365 (444)
                      -|..+|..+.++|.+..+++. +..   +.+..|+....+.   . -.+..+. . .....+......++.|+|+|..+.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSi-D~~---gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis  217 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSI-DIS---GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS  217 (558)
T ss_pred             cccCceEEEEeeccccceeec-ccc---ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence            688999999999999887754 333   4555565432111   1 0111111 1 111122233678999999999999


Q ss_pred             EEecCCCccccceEEEEEcCCCCeE
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +-+.|      ..|++++.+++++.
T Consensus       218 tl~~D------rkVR~F~~KtGklv  236 (558)
T KOG0882|consen  218 TLNPD------RKVRGFVFKTGKLV  236 (558)
T ss_pred             ccCcc------cEEEEEEeccchhh
Confidence            99877      99999999998765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=6.4e-06  Score=73.54  Aligned_cols=252  Identities=12%  Similarity=0.072  Sum_probs=159.0

Q ss_pred             EEecCCCeEEEEECCCeEEEEEccC-CCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeec
Q 013347          106 SWHQHKHIVAFISGSTQVIVRDYED-SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       106 ~~sp~g~~la~~~~dg~v~iw~~~~-~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~  183 (444)
                      .+..-.+++.+++.||.++.|.... .+.........|-..|.+++.+-++-.+.+.+. |..++++|++.-.....+..
T Consensus        15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL   94 (558)
T KOG0882|consen   15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL   94 (558)
T ss_pred             EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence            3444567899999999999997664 233333333578889999999999555555466 79999999984433322221


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEE
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSI  258 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~  258 (444)
                      .                    .+    .+. .+...++..  ..++.+..+.+.+.++|-....+..   ..-|..+|..
T Consensus        95 ~--------------------~l----Pg~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~  149 (558)
T KOG0882|consen   95 V--------------------DL----PGF-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK  149 (558)
T ss_pred             c--------------------cC----CCc-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE
Confidence            1                    00    011 122222221  1455555555599999987665443   2346799999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCC------Ccee----------ccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNT------WTSE----------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~------~~~~----------~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      +.+++-+..+++....|.|.-|....      .+..          .+........++.|+|++..+..-. .+.+++..
T Consensus       150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F  228 (558)
T KOG0882|consen  150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGF  228 (558)
T ss_pred             EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEE
Confidence            99999999999999999999998873      1110          0113445678999999999988653 55667666


Q ss_pred             EeecCCC--CcCCC-------------cCCCCcc----cccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347          323 HFASKPP--SLDAH-------------LLPVDLP----DIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAI  381 (444)
Q Consensus       323 ~~~~~~~--~~~~~-------------~~~~~~~----~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v  381 (444)
                      .+.....  .++..             +..+...    .-+.+..|.  .-+.+.|...|++|+-++--       -|+|
T Consensus       229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-------gikv  301 (558)
T KOG0882|consen  229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-------GIKV  301 (558)
T ss_pred             EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-------eEEE
Confidence            6543211  11110             1100000    012223344  55678899999999988764       4899


Q ss_pred             EEcCCCCeE
Q 013347          382 YDARRTPLI  390 (444)
Q Consensus       382 wd~~~~~~~  390 (444)
                      .++.++...
T Consensus       302 in~~tn~v~  310 (558)
T KOG0882|consen  302 INLDTNTVV  310 (558)
T ss_pred             EEeecCeEE
Confidence            999987765

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=3.1e-05  Score=74.31  Aligned_cols=178  Identities=16%  Similarity=0.237  Sum_probs=119.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .++|++++  ++.|+.|+.+|.|++.+.+.  .....+  .|...      .-+|.++++++.||+|.|-.+.+.+....
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQG--NPKTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCC--cccccc--ccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            35666665  57899999999999999874  332222  44433      56788899999999999998875443322


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-----CCeEEEEeeCCCeEEEEEcC---CCCceeeecC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDVA---QGLGTPIRRG  252 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~~i~iwd~~---~~~~~~~~~~  252 (444)
                      ..                         -  ..++.+++++|+     .+.+++|+..|  +.++.-+   ......+...
T Consensus       109 ~d-------------------------f--~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen  109 YD-------------------------F--KRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             Ee-------------------------c--CCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecC
Confidence            21                         1  268899999997     56788888775  6666532   1222335566


Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-c------CCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-S------TSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      .++|.++.|.  |+++|=++.+| |++||+.+++..... .      .......+.|.++.++++ |-++..++..++
T Consensus       160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKICSIK  233 (846)
T ss_pred             ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEEEEe
Confidence            7999999995  88888888776 899999988764322 1      112235678888776554 655444444444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.46  E-value=0.001  Score=60.11  Aligned_cols=291  Identities=13%  Similarity=0.028  Sum_probs=128.3

Q ss_pred             EEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecc
Q 013347          106 SWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (444)
Q Consensus       106 ~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~  184 (444)
                      +|.+||+.|+.++ .+|.-.+|.++-.......++.+.........++|+++.++.......|+-.|+++.+... +.. 
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-vy~-  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV-VYE-  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE-EEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE-EEE-
Confidence            6788998877765 4555444444433445555554433334456678887787777767788888887543221 111 


Q ss_pred             ccccccccccCCCCceEEEEEeeccCCCceEEEEE--ccCCCeEEEEe----------------------eCCCeEEEEE
Q 013347          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASAS----------------------YESSSFTIWD  240 (444)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~----------------------~d~~~i~iwd  240 (444)
                                           +.   ...+-...|  +.|+..++-.-                      ... .|...|
T Consensus       120 ---------------------~p---~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~-~i~~id  174 (386)
T PF14583_consen  120 ---------------------VP---DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC-RIFTID  174 (386)
T ss_dssp             --------------------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E-EEEEEE
T ss_pred             ---------------------CC---cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc-eEEEEE
Confidence                                 11   122222333  23444433221                      111 566778


Q ss_pred             cCCCCceeeecCCCCeEEEEEecCCCeE-EEEec------CCcEEEEECCCCceeccccC--CCceeEEEECCCCCEEEE
Q 013347          241 VAQGLGTPIRRGFGGLSILKWSPTGDYF-FAAKF------DGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILL  311 (444)
Q Consensus       241 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~------d~~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~  311 (444)
                      +.+++...+......+..+.|+|....+ +-|-+      |..|.+.+........+..+  ...+..=-|.|+|..|..
T Consensus       175 l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  175 LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            8998888888888889999999965544 44433      22444445554444443332  223444568999988775


Q ss_pred             EEc-CCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCC-c---------cccceEE
Q 013347          312 AFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD-D---------IYKGLIA  380 (444)
Q Consensus       312 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~-~---------~~d~~i~  380 (444)
                      -.. ..+....+.-.+.          .+... ..+..-.+...+--++||++++-=+.|.. +         ..+--|+
T Consensus       255 ~~~~~~~~~~~i~~~d~----------~t~~~-~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~  323 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDP----------DTGER-RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY  323 (386)
T ss_dssp             EEEETTT--EEEEEE-T----------TT--E-EEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred             EeecCCCCceEEEeeCC----------CCCCc-eEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence            321 2232222221111          01111 11111113445666899998764333311 0         0123677


Q ss_pred             EEEcCCCCeEEEEEee----eeeCCCC-CCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          381 IYDARRTPLISLSLIG----FIRGPGD-NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       381 vwd~~~~~~~~~~~~~----~~~~~~~-~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +++++.+......-..    .+.++.. .=-.+.|||||++    +|-..--.|...+|-+-+
T Consensus       324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEEEEE-
T ss_pred             EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEEEEeC
Confidence            8888876654222111    1122111 1136799999998    343344466666665443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.45  E-value=4.6e-06  Score=69.14  Aligned_cols=194  Identities=15%  Similarity=0.131  Sum_probs=117.5

Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCCCcee-ccc
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSE-PWS  291 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~~~~~-~~~  291 (444)
                      +--+..++++..|| .+.+++.+......  +........+.+....++.+.++..     -+..+.|+++..+.. .-.
T Consensus        98 s~~~t~V~~~~~dg-~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~  176 (319)
T KOG4714|consen   98 TMTDNRVCIGYADG-SLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK  176 (319)
T ss_pred             cccCCceEecCCCc-eEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence            33566789999998 99999887521111  1111111122233334555544321     235667777654432 111


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEec
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYK  369 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~  369 (444)
                      .....|.+++-+|..+.+++++.+++.+..|+.++.            ..+...++.|. +++.+.|+| ++..|+++++
T Consensus       177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~------------~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se  244 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV------------AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE  244 (319)
T ss_pred             cccccchhhhCCcccccEEEEecCCCeEEEEEcccc------------cchHHHHHHhhhhhhheeccCCCchheeEecC
Confidence            223349999999999988888888888888886542            34456677788 999999999 5688999999


Q ss_pred             CCCccccceEEEEEcCCCCeEEEEEeeeeeCC-----CCCCcc-eeee---eCC-----CC-CCCceEEEEeccceeeee
Q 013347          370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-----GDNPKP-VAFS---FHD-----KF-KQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~i~~-v~~s---pdg-----~~-~~~~~l~~~~~~g~i~~~  434 (444)
                      |      |.+..||..+..+- ..+..  .++     ++++.+ +...   |..     .| ..+++|.+|.+-+.|+++
T Consensus       245 d------Gslw~wdas~~~l~-i~~~~--s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~  315 (319)
T KOG4714|consen  245 D------GSLWHWDASTTFLS-ISNQA--SVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLT  315 (319)
T ss_pred             C------CcEEEEcCCCceEE-ecCcc--ccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEe
Confidence            9      99999998753221 11111  111     122222 1111   111     11 457789899888888877


Q ss_pred             e
Q 013347          435 P  435 (444)
Q Consensus       435 ~  435 (444)
                      .
T Consensus       316 ~  316 (319)
T KOG4714|consen  316 R  316 (319)
T ss_pred             c
Confidence            5

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=9e-06  Score=77.81  Aligned_cols=188  Identities=13%  Similarity=0.181  Sum_probs=119.0

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS  291 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  291 (444)
                      ..++|++++  ++.|+.|+.+| .|++++..... .....|...      .-+|.++++|+.||+|.|-.+-+.+.....
T Consensus        40 D~is~~av~--~~~~~~GtH~g-~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~  109 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRG-AVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY  109 (846)
T ss_pred             hHHHHHHhh--cceeeeccccc-eEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence            456677664  57899999998 99999987553 333333332      557999999999999999999888876666


Q ss_pred             cCCCceeEEEECCC-----CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCEEE
Q 013347          292 STSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLA  365 (444)
Q Consensus       292 ~~~~~v~~~~~sp~-----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~  365 (444)
                      ....++.+++++|+     .+.+++|+..    + +-+....+       --....+ .+. +.++|.++.|  .|.++|
T Consensus       110 df~rpiksial~Pd~~~~~sk~fv~GG~a----g-lvL~er~w-------lgnk~~v-~l~~~eG~I~~i~W--~g~lIA  174 (846)
T KOG2066|consen  110 DFKRPIKSIALHPDFSRQQSKQFVSGGMA----G-LVLSERNW-------LGNKDSV-VLSEGEGPIHSIKW--RGNLIA  174 (846)
T ss_pred             ecCCcceeEEeccchhhhhhhheeecCcc----e-EEEehhhh-------hcCccce-eeecCccceEEEEe--cCcEEE
Confidence            67788999999998     3455555322    2 22222111       0011111 122 2228999999  577898


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      -++.+       -|+|||+.+++.+     ..++.....++.=.|=|.-.|.....|.+||.+ +|.++.+.
T Consensus       175 Wand~-------Gv~vyd~~~~~~l-----~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  175 WANDD-------GVKVYDTPTRQRL-----TNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EecCC-------CcEEEecccccee-----eccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence            88776       3999999988766     233322233333333333333444457888875 45554443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.43  E-value=5.1e-07  Score=53.48  Aligned_cols=36  Identities=31%  Similarity=0.594  Sum_probs=33.1

Q ss_pred             cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          342 DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       342 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      ++.++.+|. .|.+++|+|++++|++++.|      ++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence            456788898 99999999999999999999      9999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.39  E-value=3.3e-05  Score=71.90  Aligned_cols=75  Identities=15%  Similarity=0.293  Sum_probs=63.7

Q ss_pred             CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347          211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  287 (444)
Q Consensus       211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  287 (444)
                      ...|.+++++|+...|+.|..|| .|.+||...+... .....-.+..++|+|+|..+++|+..|.+.+||+.-...
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~Dg-SiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDG-SIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             CCcceEEecCcccceEEEEecCC-eEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            36899999999999999999998 9999998776433 334445678899999999999999999999999876544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=9.4e-06  Score=77.32  Aligned_cols=258  Identities=16%  Similarity=0.197  Sum_probs=149.3

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCe--EEEEecCCcEEEEecCCCCCccee
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~--ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      -++|+|.-+-+.....-..+.|+|++-. ...... .-..+.+.-+.|-|+.++  |++.-.+|.+.+|.-+........
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle~~-~~l~vv-pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~  312 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLEYE-CCLAVV-PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK  312 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcchhh-ceeEEE-EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence            4678887776666677888999999863 222222 233556677888887654  666667899999987632222111


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCcee------------
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTP------------  248 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~------------  248 (444)
                      .      ...+...-..+..+++..+..   .+......|. ...++.--.+| .+.+|.+.+++...            
T Consensus       313 ~------~~~l~~dl~~Q~~~vr~m~~~---rp~~~~~cPs~~sa~avl~s~g-~~~~w~l~~~ri~~~~~s~~iel~~p  382 (1062)
T KOG1912|consen  313 P------NASLSMDLGEQVHVVRPMEEF---RPVIGASCPSTPSALAVLYSSG-DSTFWQLSNGRIHLDYRSSSIELVLP  382 (1062)
T ss_pred             c------chhhccccccceEEEeechhc---ccceeecCCCChhhhhhhhhcc-hhHHHhhhcCCcCccccccccccccc
Confidence            1      111222222233333333332   2222222333 33333333444 66677766442100            


Q ss_pred             -----------------e---ecCCCCeEEEEEec-----------CCC-------eEEEEecCCcEEEEECCCCce-ec
Q 013347          249 -----------------I---RRGFGGLSILKWSP-----------TGD-------YFFAAKFDGTFYLWETNTWTS-EP  289 (444)
Q Consensus       249 -----------------~---~~~~~~v~~~~~sp-----------~~~-------~l~~~~~d~~v~iwd~~~~~~-~~  289 (444)
                                       +   -.|.....+....|           .++       +++.|...|+|.++|+.++.. ..
T Consensus       383 f~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~  462 (1062)
T KOG1912|consen  383 FDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS  462 (1062)
T ss_pred             ccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh
Confidence                             0   01222333333322           222       567899999999999999888 56


Q ss_pred             cccCCCceeEEEECCCCCEEEEEEcCCc-----eEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCC
Q 013347          290 WSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGE  362 (444)
Q Consensus       290 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~  362 (444)
                      +..|...|.++.|--+.+++-++++.-.     ....+.+-..+..        -....+.+.+..  +|..+..|.-|+
T Consensus       463 fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG--------lsk~fR~l~~~despI~~irvS~~~~  534 (1062)
T KOG1912|consen  463 FSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG--------LSKRFRGLQKPDESPIRAIRVSSSGR  534 (1062)
T ss_pred             hcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccc--------cccccccCCCCCcCcceeeeecccCc
Confidence            7789999999999888887776654321     1222222211110        011122222333  899999999999


Q ss_pred             EEEEEecCCCccccceEEEEEcCCC
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      ||+..-.+      .-+.+||+++.
T Consensus       535 yLai~Fr~------~plEiwd~kt~  553 (1062)
T KOG1912|consen  535 YLAILFRR------EPLEIWDLKTL  553 (1062)
T ss_pred             eEEEEecc------cchHHHhhccc
Confidence            99999998      78999999754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.35  E-value=0.00015  Score=63.18  Aligned_cols=217  Identities=15%  Similarity=0.093  Sum_probs=117.1

Q ss_pred             CCeEEEEEccCCCCceeEEecCC-CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          120 STQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       120 dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      +|+|..||..+ ++......... .....+. ..++++.++++..++.+..||..+++......                
T Consensus         2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~----------------   63 (238)
T PF13360_consen    2 DGTLSALDPRT-GKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD----------------   63 (238)
T ss_dssp             TSEEEEEETTT-TEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE----------------
T ss_pred             CCEEEEEECCC-CCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee----------------
Confidence            57788888866 44444432211 1222211 33345788888889999999997443222111                


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCC----CCeEEEEEecCCCeEEEEec
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGF----GGLSILKWSPTGDYFFAAKF  273 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~----~~v~~~~~sp~~~~l~~~~~  273 (444)
                             +..    .+.... ..++..++.++.++ .+..+|..+++.... ....    ..........++..++.+..
T Consensus        64 -------~~~----~~~~~~-~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (238)
T PF13360_consen   64 -------LPG----PISGAP-VVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS  130 (238)
T ss_dssp             -------CSS----CGGSGE-EEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET
T ss_pred             -------ccc----ccccee-eeccccccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec
Confidence                   111    111111 22445566666777 999999999987765 2221    11222333334788888888


Q ss_pred             CCcEEEEECCCCceeccc-cCCCc----------eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347          274 DGTFYLWETNTWTSEPWS-STSGF----------VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  342 (444)
Q Consensus       274 d~~v~iwd~~~~~~~~~~-~~~~~----------v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      ++.|..+|+++|+..... .....          +..-....++ .++++..+ +.+..+++..             ...
T Consensus       131 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-g~~~~~d~~t-------------g~~  195 (238)
T PF13360_consen  131 SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGD-GRVVAVDLAT-------------GEK  195 (238)
T ss_dssp             CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCT-SSEEEEETTT-------------TEE
T ss_pred             cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCC-CeEEEEECCC-------------CCE
Confidence            999999999999873211 11111          1122222344 44444333 3333334321             111


Q ss_pred             ccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          343 IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       343 ~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +-... ...+..+ ...++..|++++.+      +.|..||+++++..
T Consensus       196 ~w~~~-~~~~~~~-~~~~~~~l~~~~~~------~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  196 LWSKP-ISGIYSL-PSVDGGTLYVTSSD------GRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEC-SS-ECEC-EECCCTEEEEEETT------TEEEEEETTTTEEE
T ss_pred             EEEec-CCCccCC-ceeeCCEEEEEeCC------CEEEEEECCCCCEE
Confidence            11111 1122221 34677888888766      99999999998875

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=5.9e-07  Score=86.42  Aligned_cols=193  Identities=17%  Similarity=0.178  Sum_probs=129.2

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..|....+|++|+-+.+.|+++...|.|+++++.++..                         ......|. ..|+.+.-
T Consensus      1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-------------------------e~s~ncH~-SavT~veP 1151 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-------------------------EESVNCHQ-SAVTLVEP 1151 (1516)
T ss_pred             hccccceeeEEeecCCceEEeeeccceEEEEEccCccc-------------------------cccccccc-cccccccc
Confidence            47788999999999988898898999999999984432                         22345664 89999999


Q ss_pred             ccCCCeEEEEeeCCC-eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-ec-cc---cC
Q 013347          220 GPDGRYLASASYESS-SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EP-WS---ST  293 (444)
Q Consensus       220 sp~~~~l~~~~~d~~-~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~-~~---~~  293 (444)
                      +.||..+++.+.-.. -..+|++..--...  ..-..-.++.|+...+.-+.|+......+||++++.. .+ +.   +.
T Consensus      1152 s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~--Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1152 SVDGSTQLTSSSSSSPLSALWDASSTGGPR--HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             cCCcceeeeeccccCchHHHhccccccCcc--ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh
Confidence            999998877665431 46789987521111  1113445788887654446666667799999999876 33 22   22


Q ss_pred             CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc
Q 013347          294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ...-+.+.|+|+..+|+-    ++.+|.++.               ...++.|...+.-..-.|+|.|.-++.-+     
T Consensus      1230 ~y~~n~a~FsP~D~LIln----dGvLWDvR~---------------~~aIh~FD~ft~~~~G~FHP~g~eVIINS----- 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN----DGVLWDVRI---------------PEAIHRFDQFTDYGGGGFHPSGNEVIINS----- 1285 (1516)
T ss_pred             hhhccccccCCCcceEee----Cceeeeecc---------------HHHHhhhhhheecccccccCCCceEEeec-----
Confidence            333478899999998873    355555553               23334443332112345999998887644     


Q ss_pred             cccceEEEEEcCCCCeE
Q 013347          374 IYKGLIAIYDARRTPLI  390 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~  390 (444)
                            .|||+++-+++
T Consensus      1286 ------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLL 1296 (1516)
T ss_pred             ------hhhhhHHHHHH
Confidence                  38999875443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.30  E-value=0.0011  Score=62.09  Aligned_cols=219  Identities=13%  Similarity=0.042  Sum_probs=119.7

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeE-EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~-~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  188 (444)
                      .+..+++++.+|.+.-+|..+ ++........  ..+. .+.  .+++.+++++.++.+..+|..+++........    
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~t-G~~~W~~~~~--~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----  134 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAET-GKRLWRVDLD--ERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS----  134 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccC-CcEeeeecCC--CCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC----
Confidence            356777888889999999877 5544332211  1121 222  24577888888999999998744332221111    


Q ss_pred             ccccccCCCCceEEEEEeeccCCCceEE-EEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE------EEEE
Q 013347          189 LGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS------ILKW  261 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~------~~~~  261 (444)
                                             ..+.+ ...  .+..++.+..++ .+..||.++++.+..........      +...
T Consensus       135 -----------------------~~~~~~p~v--~~~~v~v~~~~g-~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~  188 (377)
T TIGR03300       135 -----------------------SEVLSPPLV--ANGLVVVRTNDG-RLTALDAATGERLWTYSRVTPALTLRGSASPVI  188 (377)
T ss_pred             -----------------------ceeecCCEE--ECCEEEEECCCC-eEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence                                   11111 111  244566677777 99999999987765443322211      1122


Q ss_pred             ecCCCeEEEEecCCcEEEEECCCCceecccc--CC---Cc------e-eEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          262 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TS---GF------V-TGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       262 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~---~~------v-~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      .  +..++.+..++.+..+|.++++......  ..   ..      + .+..+  .+..++++. .++.++.++..+.  
T Consensus       189 ~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG--  261 (377)
T TIGR03300       189 A--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSG--  261 (377)
T ss_pred             E--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCC--
Confidence            2  3467778888999999999987632111  00   00      0 11112  234455443 3455666664221  


Q ss_pred             CcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                                 +.+-..... ....+.  .++..+++++.+      |.+..+|..+++.+
T Consensus       262 -----------~~~W~~~~~-~~~~p~--~~~~~vyv~~~~------G~l~~~d~~tG~~~  302 (377)
T TIGR03300       262 -----------RVLWKRDAS-SYQGPA--VDDNRLYVTDAD------GVVVALDRRSGSEL  302 (377)
T ss_pred             -----------cEEEeeccC-CccCce--EeCCEEEEECCC------CeEEEEECCCCcEE
Confidence                       111111100 111111  245677777766      89999999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.30  E-value=0.0006  Score=58.69  Aligned_cols=191  Identities=13%  Similarity=0.184  Sum_probs=101.7

Q ss_pred             ceEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      .+..++|+|+...| ++....+.|...+.+  ++....+...--+..-.|++..+ +.++.+.. ++.+.++++......
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~-~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGN-GRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-ST-TEEEEEETTTTEEEEEEE----TT
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECC-CEEEEEEcCCCcEEEEEEeccccc
Confidence            38999999986654 555566776666654  55555554343467888999877 45555554 699999998633222


Q ss_pred             ceeeccccccccccccCCCCceEEEE-EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC---CCceeee----
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVD-FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIR----  250 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~---~~~~~~~----  250 (444)
                      ......                .... .+.......+-.++|+|.++.|+.+-... -..+|.+..   .......    
T Consensus       100 ~~~~~~----------------~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~~  162 (248)
T PF06977_consen  100 LDRADV----------------QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQD  162 (248)
T ss_dssp             --EEEE----------------EEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-HH
T ss_pred             cchhhc----------------eEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeeccccc
Confidence            111110                0000 11111236789999999888888877665 677777664   2111111    


Q ss_pred             -----cCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceec---ccc-------CCCceeEEEECCCCCEEEEE
Q 013347          251 -----RGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP---WSS-------TSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       251 -----~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~---~~~-------~~~~v~~~~~sp~g~~l~~~  312 (444)
                           .....+.+++++|.. ++++....+..|..+|. +|+...   +..       .-.....++|.++|++.+++
T Consensus       163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence                 123467899999964 45577777888999994 444422   221       11357899999999776654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.29  E-value=2.4e-06  Score=73.56  Aligned_cols=131  Identities=11%  Similarity=0.063  Sum_probs=94.4

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      ..+|.++.|...++++..|..+|.|..+|+...  +...+.....|...|+++..-. ++.+|++++.+|+|++||.+..
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~  331 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT  331 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence            347999999999999999999999999999865  2222222247899999998766 5578888888999999999833


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCC-ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE-QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG  252 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~  252 (444)
                      +...                      -+..+.+|... .-.-+-..+....+++++.|- ..+||.++.+........
T Consensus       332 K~~~----------------------~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc-ytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  332 KCKK----------------------SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC-YTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccc----------------------ceeeeecccccccccccccccccceEEEccCee-EEEEEecccCceeeccCC
Confidence            2211                      13456666421 112233456677788888886 999999999876654443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.0034  Score=58.61  Aligned_cols=266  Identities=18%  Similarity=0.155  Sum_probs=160.2

Q ss_pred             eEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~  179 (444)
                      ...+...+++..+.... ....+.+.+... ........ .-......++.++.+.++++... ++.|.+.|........
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~  110 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG  110 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeeccccc-ceeeeecc-CCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence            55678888886555443 223444444431 11111111 11133456788888776666655 4999999966443333


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC--CCeEEEEEcCCCCceeeecCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                      ....+                           .....++++|+++.++.+...  .+++.+.|-.+++......-...-.
T Consensus       111 ~~~vG---------------------------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~  163 (381)
T COG3391         111 SIPVG---------------------------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT  163 (381)
T ss_pred             Eeeec---------------------------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc
Confidence            32222                           256789999999888887762  2389999988877665433222238


Q ss_pred             EEEEecCCCeEEEE-ecCCcEEEEECCCCceec-----cccCCCceeEEEECCCCCEEEEEEcCC--ceEEEEEeecCCC
Q 013347          258 ILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPP  329 (444)
Q Consensus       258 ~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~~~~~~~  329 (444)
                      .++++|+|+.++.. ..++.|.+.|..+.....     ...-......+.++|+|..+++....+  ..+..++....  
T Consensus       164 ~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~--  241 (381)
T COG3391         164 GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG--  241 (381)
T ss_pred             eEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc--
Confidence            89999999977554 478899999987765543     122233457789999999888776554  34555543211  


Q ss_pred             CcCCCcCCCCcccccc-cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcc
Q 013347          330 SLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP  407 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~  407 (444)
                                 ..... ..... ....+.++|+|+++.+.....     +.+.+-|..+..+......  ...-...+..
T Consensus       242 -----------~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-----~~V~vid~~~~~v~~~~~~--~~~~~~~~~~  303 (381)
T COG3391         242 -----------NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-----GTVSVIDGATDRVVKTGPT--GNEALGEPVS  303 (381)
T ss_pred             -----------eEEEeccccccCCCCceeECCCCCEEEEEecCC-----CeEEEEeCCCCceeeeecc--ccccccccee
Confidence                       11110 11111 245688999999998885553     7899999988776532221  1111223556


Q ss_pred             eeeeeCCCC
Q 013347          408 VAFSFHDKF  416 (444)
Q Consensus       408 v~~spdg~~  416 (444)
                      +++.+....
T Consensus       304 ~~~~~~~~~  312 (381)
T COG3391         304 IAISPLYDT  312 (381)
T ss_pred             ccceeeccc
Confidence            666665443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.28  E-value=0.00086  Score=56.99  Aligned_cols=217  Identities=14%  Similarity=0.141  Sum_probs=124.6

Q ss_pred             EEEEEeeCCCeEEEEecC-Cc-EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          147 KVLEWRPNGGRSLSVGCK-GG-ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       147 ~~l~~s~~~~~ll~~~~d-g~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      ..++|+|...+-++.... |+ ..++|.+....+..+.+.                 .-+.+.+|       -.|||||+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-----------------~~RHfyGH-------Gvfs~dG~  126 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-----------------EGRHFYGH-------GVFSPDGR  126 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-----------------cCceeecc-------cccCCCCc
Confidence            357788876665555554 44 568888866666555443                 12344555       35899999


Q ss_pred             eEEEEeeC----CCeEEEEEcCCCCce--eeecCCCCeEEEEEecCCCeEEEEec------------------CCcEEEE
Q 013347          225 YLASASYE----SSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKF------------------DGTFYLW  280 (444)
Q Consensus       225 ~l~~~~~d----~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~------------------d~~v~iw  280 (444)
                      +|+..-.|    .|.|-|||.+.+-..  .+..|.-....+.|.+||+.++.+..                  .-.+.+.
T Consensus       127 ~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll  206 (366)
T COG3490         127 LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL  206 (366)
T ss_pred             EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence            99876332    248999999854322  23344555677899999999876542                  1235566


Q ss_pred             ECCCCcee---ccc--cCCCceeEEEECCCCCEEEEEEcC--CceEEEEEeecCCCCcCCCcCCCCcccccccccCCcee
Q 013347          281 ETNTWTSE---PWS--STSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  353 (444)
Q Consensus       281 d~~~~~~~---~~~--~~~~~v~~~~~sp~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  353 (444)
                      |..+++..   .+.  .+...+..++..++|..++ ++.-  ...+.---+....+  ...+..+..++-+...-.+.|-
T Consensus       207 d~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf-gcQy~G~~~d~ppLvg~~~~--g~~l~~~~~pee~~~~~anYig  283 (366)
T COG3490         207 DAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF-GCQYRGPRNDLPPLVGHFRK--GEPLEFLDLPEEQTAAFANYIG  283 (366)
T ss_pred             eccccchhhhccCchhhhhcceeeeeeCCCCcEEE-EEEeeCCCccCCcceeeccC--CCcCcccCCCHHHHHHHHhhhh
Confidence            76666652   233  3455688889999988666 3321  11111000000000  0001111111111111122677


Q ss_pred             EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347          354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  395 (444)
Q Consensus       354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~  395 (444)
                      +++.+.+..+++..+-.+     +...+||..++.++....+
T Consensus       284 siA~n~~~glV~lTSP~G-----N~~vi~da~tG~vv~~a~l  320 (366)
T COG3490         284 SIAANRRDGLVALTSPRG-----NRAVIWDAATGAVVSEAAL  320 (366)
T ss_pred             heeecccCCeEEEecCCC-----CeEEEEEcCCCcEEecccc
Confidence            888887777777666554     7899999999998754443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.25  E-value=7.5e-05  Score=71.36  Aligned_cols=203  Identities=12%  Similarity=0.108  Sum_probs=110.3

Q ss_pred             EEEecCCCeEEEE-ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCCCcc
Q 013347          105 VSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAA  179 (444)
Q Consensus       105 ~~~sp~g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~~~~  179 (444)
                      +=++|||+.+... -..+.+.+.|.++. +....+.  -.+....++++|+|+.+++++.+    .++..-+........
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etm-eV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v  274 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETM-EVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV  274 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccc-eEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEE
Confidence            3445677655332 24566777777752 2222221  12345667899998888877632    233333222111100


Q ss_pred             e---------eeccccccccc--cc---cCC--CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          180 S---------VRSGAASFLGA--LS---RGP--GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       180 ~---------~~~~~~~~~~~--~~---~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      .         +..++...+..  +.   ...  +..+.....+.-  ......+.++|||+++++++.-..+|.|+|+.+
T Consensus       275 vfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             EEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence            0         01111111100  10   000  001223333333  256788999999999988876445999999987


Q ss_pred             CCc------------eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----------Cce-eccc-----cCCC
Q 013347          244 GLG------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----------WTS-EPWS-----STSG  295 (444)
Q Consensus       244 ~~~------------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----------~~~-~~~~-----~~~~  295 (444)
                      .+.            .....-.......+|+++|+...+-..|..|..||+.+          ... .++.     +|..
T Consensus       353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~  432 (635)
T PRK02888        353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH  432 (635)
T ss_pred             hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence            542            11111233455788999998778888899999999875          111 1122     3332


Q ss_pred             ceeEEEECCCCCEEEEE
Q 013347          296 FVTGATWDPEGRMILLA  312 (444)
Q Consensus       296 ~v~~~~~sp~g~~l~~~  312 (444)
                      ....=.-.|+|++|++.
T Consensus       433 ~~~g~t~~~dgk~l~~~  449 (635)
T PRK02888        433 ASMGETKEADGKWLVSL  449 (635)
T ss_pred             ecCCCcCCCCCCEEEEc
Confidence            22233346888888865

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.23  E-value=0.00014  Score=68.29  Aligned_cols=214  Identities=13%  Similarity=0.123  Sum_probs=110.4

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE-ecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw-~~~~~~~~~~  180 (444)
                      .+.++++|+|+.+++ +.+|...|+....  .....     .+.-....|.+. +.+++-...++|.|+ +++ ......
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~--~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~-~~~~k~  104 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA--WRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFK-NEVVKS  104 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTT--TEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTE-E-TT--
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccC--Ccccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCc-cccceE
Confidence            678999999999988 5788888887432  11111     233456889985 677777778899996 333 111111


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                      +..                           ...+..+-.   |..|+..+.+  .|.+||..+++.+...... +|..+.
T Consensus       105 i~~---------------------------~~~~~~If~---G~LL~~~~~~--~i~~yDw~~~~~i~~i~v~-~vk~V~  151 (443)
T PF04053_consen  105 IKL---------------------------PFSVEKIFG---GNLLGVKSSD--FICFYDWETGKLIRRIDVS-AVKYVI  151 (443)
T ss_dssp             ------------------------------SS-EEEEE----SSSEEEEETT--EEEEE-TTT--EEEEESS--E-EEEE
T ss_pred             EcC---------------------------CcccceEEc---CcEEEEECCC--CEEEEEhhHcceeeEEecC-CCcEEE
Confidence            111                           012333332   7777766543  7999999998877765544 389999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCC------------ceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTW------------TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~------------~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      |+++|++++..+.+ .+.+++.+..            ....+..-...|.+..|.-+  .++.+...  .+.-+-     
T Consensus       152 Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkYl~-----  221 (443)
T PF04053_consen  152 WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN--HLKYLV-----  221 (443)
T ss_dssp             E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT--EEEEEE-----
T ss_pred             EECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC--eEEEEE-----
Confidence            99999999888754 6788775543            22222232567889999776  44444332  333321     


Q ss_pred             CCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                                 .....++..-. ++.=+.+.|..+.+.....+      +.+..+.+.
T Consensus       222 -----------~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~------~~v~~~~ld  262 (443)
T PF04053_consen  222 -----------NGETGIIAHLDKPLYLLGYLPKENRLYLIDRD------GNVISYELD  262 (443)
T ss_dssp             -----------TTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--------EEEEE--
T ss_pred             -----------cCCcceEEEcCCceEEEEEEccCCEEEEEECC------CCEEEEEEC
Confidence                       11112222212 44455556655666666555      666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.22  E-value=0.0017  Score=61.21  Aligned_cols=262  Identities=13%  Similarity=-0.004  Sum_probs=133.9

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE-EEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      +..++.++.+|.+.-+|.++ ++......  -.+.+.+ ... .+ +.+++...++.+.-+|.++++.........    
T Consensus       120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~--~~~~~~ssP~v-~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----  190 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAED-GEVAWQTK--VAGEALSRPVV-SD-GLVLVHTSNGMLQALNESDGAVKWTVNLDV----  190 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCC-CCCccccc--CCCceecCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeecCCC----
Confidence            45666778899999999887 55544332  1122222 112 23 567777778999999988554433222110    


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC--------CeEEEEE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG--------GLSILKW  261 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~--------~v~~~~~  261 (444)
                                  ......+.. .++    .  .+..++.++.++ .+..+|..+++.........        ....+.-
T Consensus       191 ------------~~~~~~~~~-sP~----v--~~~~v~~~~~~g-~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~  250 (394)
T PRK11138        191 ------------PSLTLRGES-APA----T--AFGGAIVGGDNG-RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT  250 (394)
T ss_pred             ------------CcccccCCC-CCE----E--ECCEEEEEcCCC-EEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence                        000000000 111    1  123455666676 88888888886554322110        0111112


Q ss_pred             ec--CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          262 SP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       262 sp--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      +|  .+..++.++.++.+..+|..+++......... ...+..  .+..++++. .++.+..++..+..     .+|...
T Consensus       251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~-----~~W~~~  321 (394)
T PRK11138        251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-VNDFAV--DGGRIYLVD-QNDRVYALDTRGGV-----ELWSQS  321 (394)
T ss_pred             CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-ccCcEE--ECCEEEEEc-CCCeEEEEECCCCc-----EEEccc
Confidence            22  24567777789999999999998643222111 112222  344455443 34666666653211     011100


Q ss_pred             cccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc-ceeeeeCCCCCC
Q 013347          340 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK-PVAFSFHDKFKQ  418 (444)
Q Consensus       340 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~-~v~~spdg~~~~  418 (444)
                           .+ .+....+...  .+.+|++++.+      |.|.+.|..+|+++...     +-....+. ...+       .
T Consensus       322 -----~~-~~~~~~sp~v--~~g~l~v~~~~------G~l~~ld~~tG~~~~~~-----~~~~~~~~s~P~~-------~  375 (394)
T PRK11138        322 -----DL-LHRLLTAPVL--YNGYLVVGDSE------GYLHWINREDGRFVAQQ-----KVDSSGFLSEPVV-------A  375 (394)
T ss_pred             -----cc-CCCcccCCEE--ECCEEEEEeCC------CEEEEEECCCCCEEEEE-----EcCCCcceeCCEE-------E
Confidence                 00 0011111122  24567777777      99999999999876322     11111121 1122       2


Q ss_pred             CceEEEEeccceeeeeee
Q 013347          419 GPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       419 ~~~l~~~~~~g~i~~~~~  436 (444)
                      +..|-++..+|.|+.+.+
T Consensus       376 ~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        376 DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEEEEEeCCceEEEEeC
Confidence            234778889999988764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.20  E-value=0.0056  Score=58.19  Aligned_cols=249  Identities=13%  Similarity=0.098  Sum_probs=129.7

Q ss_pred             eEEEEEecCCCeEEEE-ECCC----eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC-----------
Q 013347          102 LQGVSWHQHKHIVAFI-SGST----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-----------  165 (444)
Q Consensus       102 v~~~~~sp~g~~la~~-~~dg----~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg-----------  165 (444)
                      +...++||||+++|.+ +..|    .++++|+.++ +...-..  .......+.|.+++..++....+.           
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            4467899999999976 3333    5999999883 3222111  111122399999988888887652           


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCc-eEEEEEccCCCeEEEEeeCCC---eEEEEEc
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ-ITALSWGPDGRYLASASYESS---SFTIWDV  241 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d~~---~i~iwd~  241 (444)
                      .|+.|.+.+......+                       .+....... ...+..++|+++|+..+..+.   .+.+.++
T Consensus       203 ~v~~~~~gt~~~~d~l-----------------------vfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDEL-----------------------VFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             EEEEEETTS-GGG-EE-----------------------EEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEEEECCCChHhCee-----------------------EEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence            2566666533222111                       122222223 678889999999887654432   4778888


Q ss_pred             CCC-----CceeeecCCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCCce---e-ccccCCCceeEEEECCCCCEE
Q 013347          242 AQG-----LGTPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTS---E-PWSSTSGFVTGATWDPEGRMI  309 (444)
Q Consensus       242 ~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~---~-~~~~~~~~v~~~~~sp~g~~l  309 (444)
                      ..+     ....+......+....-+..+.+++....   .+.|...++.....   . .+..+...+.-..+...+.+|
T Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L  339 (414)
T PF02897_consen  260 DDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL  339 (414)
T ss_dssp             CCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred             cccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence            764     33444544444444333334444444432   35777778877663   2 344555543333444456666


Q ss_pred             EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEEEEE-ecCCCccccceEEEEEcCC
Q 013347          310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVS-YKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~-~~d~~~~~d~~i~vwd~~~  386 (444)
                      +.....++.. .+.+.+..          .......+.  ....|..+...+++..+... +.-..   -++++.||+.+
T Consensus       340 vl~~~~~~~~-~l~v~~~~----------~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~---P~~~y~~d~~t  405 (414)
T PF02897_consen  340 VLSYRENGSS-RLRVYDLD----------DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTT---PPTVYRYDLAT  405 (414)
T ss_dssp             EEEEEETTEE-EEEEEETT-----------TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTE---EEEEEEEETTT
T ss_pred             EEEEEECCcc-EEEEEECC----------CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCC---CCEEEEEECCC
Confidence            6555444432 22222211          012222222  22245666666666544332 22211   27899999999


Q ss_pred             CCeE
Q 013347          387 TPLI  390 (444)
Q Consensus       387 ~~~~  390 (444)
                      ++..
T Consensus       406 ~~~~  409 (414)
T PF02897_consen  406 GELT  409 (414)
T ss_dssp             TCEE
T ss_pred             CCEE
Confidence            8765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.19  E-value=0.00044  Score=67.68  Aligned_cols=151  Identities=15%  Similarity=0.149  Sum_probs=91.6

Q ss_pred             CCeEEEEEeeCCCeEEEEec------CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          144 RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      ..+.+.+++|+|+.+++...      |..-.||-....+....+..+                           ...+.-
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g---------------------------~~~t~P  402 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG---------------------------HSLTRP  402 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---------------------------CCCCCc
Confidence            46788999999888877762      444455554423322222222                           247888


Q ss_pred             EEccCCCeEEEEeeCC-----------CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEE---EECC
Q 013347          218 SWGPDGRYLASASYES-----------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL---WETN  283 (444)
Q Consensus       218 ~~sp~~~~l~~~~~d~-----------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~i---wd~~  283 (444)
                      .|+|||+.|++....+           +.+.+.++..++...  ...+.|..+.|||||..++... +++|++   -...
T Consensus       403 sWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~  479 (591)
T PRK13616        403 SWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE  479 (591)
T ss_pred             eECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence            9999988887765321           134334554443322  3356799999999999987665 477777   4544


Q ss_pred             CCceec-----cc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          284 TWTSEP-----WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       284 ~~~~~~-----~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .+....     +. .....+.++.|..++.+++...+.+..++.+.+
T Consensus       480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v  526 (591)
T PRK13616        480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL  526 (591)
T ss_pred             CCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence            554211     22 223346889999999976544333344555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.00015  Score=64.08  Aligned_cols=75  Identities=11%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             cceEEEEEecCCC-eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~  177 (444)
                      ..|++++|||..+ ++..++.+..|+|.|+++. ...... ..+ ..+++++|.-|..+++.+|. .|.|.|||++.+..
T Consensus       194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             hhhhhhccCccccceeeeeccCceEEEEecccc-eeeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence            3699999999888 6778899999999999973 222222 234 78999999998887777776 59999999985543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.17  E-value=0.00034  Score=70.49  Aligned_cols=203  Identities=13%  Similarity=0.164  Sum_probs=127.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC----C---
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----T---  284 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~----~---  284 (444)
                      ..|.++.|.-+...++.+...| .|.+-|.++......-.-...|.+++|+||++.++..+..+++.+-.-.    .   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G-~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALG-DIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCC-cEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            5899999999999999999998 8888888877665555567899999999999999888877776654320    0   


Q ss_pred             --------Cce---------ecccc---------------------CCCceeEEEECCCCCEEEEEEcCCceE-EEEEee
Q 013347          285 --------WTS---------EPWSS---------------------TSGFVTGATWDPEGRMILLAFAGSLTL-GSIHFA  325 (444)
Q Consensus       285 --------~~~---------~~~~~---------------------~~~~v~~~~~sp~g~~l~~~~~~~~~~-~~~~~~  325 (444)
                              ++.         ..+.+                     ....-++++|--||+++++..-..... +.+++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                    000         00110                     011224589999999999855332333 666666


Q ss_pred             cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  405 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i  405 (444)
                      +....++    . ...+..     .--.+++|-|.|..+++.....++   +.|.+|..+.-..-  ...-..+.....+
T Consensus       228 drEg~Ln----s-~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd---~~IvffErNGL~hg--~f~l~~p~de~~v  292 (1265)
T KOG1920|consen  228 DREGALN----S-TSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSD---SDIVFFERNGLRHG--EFVLPFPLDEKEV  292 (1265)
T ss_pred             cccchhh----c-ccCccc-----ccccceeecCCCCeEeeeeecCCC---CcEEEEecCCcccc--ccccCCcccccch
Confidence            5321111    0 000000     023579999999999998776554   78999986642211  1111112223348


Q ss_pred             cceeeeeCCCCCCCceEEE---Eeccceeeeee
Q 013347          406 KPVAFSFHDKFKQGPLLSV---CWSSGFCCTYP  435 (444)
Q Consensus       406 ~~v~~spdg~~~~~~~l~~---~~~~g~i~~~~  435 (444)
                      ..++|+.++..     |++   +-.+..|.+|-
T Consensus       293 e~L~Wns~sdi-----LAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  293 EELAWNSNSDI-----LAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             heeeecCCCCc-----eeeeecccccceEEEEE
Confidence            89999988765     555   33444455553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.00095  Score=62.31  Aligned_cols=192  Identities=16%  Similarity=0.137  Sum_probs=129.5

Q ss_pred             eEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCC
Q 013347          102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGN  177 (444)
Q Consensus       102 v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~  177 (444)
                      -..++.++.++.+. ....++.|.+.|..+. ........+.  ....++++++++.+.++..   ++++.+.|-.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCccc-ceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            45788899888554 4445689999997763 3333322233  6778999999888777766   47777777664433


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRG  252 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~  252 (444)
                      ...+..+                           .....++++|+|+.++.+..+.+.|.+.|........     ....
T Consensus       153 ~~~~~vG---------------------------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~  205 (381)
T COG3391         153 TATIPVG---------------------------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV  205 (381)
T ss_pred             EEEEecC---------------------------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc
Confidence            3332222                           1228899999999887777444599999977665543     1222


Q ss_pred             CCCeEEEEEecCCCeEEEEecC---CcEEEEECCCCceecc--c-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          253 FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEPW--S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~~~~--~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      ......+.++|+|+++......   +.+...|..++.....  . ... ....+..+|+|+.+.+.......+..++.
T Consensus       206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence            3445678999999977555443   5899999998877443  2 222 56788999999999987666566666664

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0016  Score=63.47  Aligned_cols=186  Identities=11%  Similarity=0.043  Sum_probs=117.2

Q ss_pred             EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCC-eEEEEEeeCCCeEEEEecC-C----cEEEEecCCCCCcc
Q 013347          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD-VKVLEWRPNGGRSLSVGCK-G----GICIWAPSYPGNAA  179 (444)
Q Consensus       106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~ll~~~~d-g----~v~iw~~~~~~~~~  179 (444)
                      +|++.+..+|.|+.+|.|.+.+-..  +...-+ ..+... |..+....+...|++.+.| +    .++||+++..+...
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF--QLIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc--eeeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            4778899999999999987765442  221222 244444 5544333333567777776 3    58999998332111


Q ss_pred             eeeccccccccccccCCCCceEEE--EEeec----cCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC--CC---Ccee
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLV--DFLRS----QNGEQITALSWGPDGRYLASASYESSSFTIWDVA--QG---LGTP  248 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~--~~---~~~~  248 (444)
                      .   .                .+.  ..+.+    ....++.+++.+.+-+.+|+|-.+| .|..+.-.  ..   +...
T Consensus       107 s---P----------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG-~V~~~~GDi~RDrgsr~~~  166 (933)
T KOG2114|consen  107 S---P----------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG-LVICYKGDILRDRGSRQDY  166 (933)
T ss_pred             C---c----------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc-EEEEEcCcchhccccceee
Confidence            0   0                111  11111    1236788999999988888888887 88887422  11   1112


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEc
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                      ....+++|+.+++..+++.++-+..-..|.+|.+.+..+  ..+..|+..++|.++++....++++.+
T Consensus       167 ~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  167 SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             eccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence            334568999999999888733333345799999985552  345678888999999987765555544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.0005  Score=60.95  Aligned_cols=248  Identities=12%  Similarity=0.089  Sum_probs=133.2

Q ss_pred             EecCCCCCeEEEEEeeCCCe-EEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEE
Q 013347          138 LTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  216 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~~~~-ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  216 (444)
                      +...|...|.+++|||...- +..++.+..|+|.|+++..                         ++..+..+  ..+.+
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------------------~vssy~a~--~~~wS  240 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------------------VVSSYIAY--NQIWS  240 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------------------eeeheecc--CCcee
Confidence            33578889999999998653 5566678999999998432                         23334444  68999


Q ss_pred             EEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eec--CCCCeEEEEEe------cCCCeEEEEecCCcEEEEECCCCc
Q 013347          217 LSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRR--GFGGLSILKWS------PTGDYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~--~~~~v~~~~~s------p~~~~l~~~~~d~~v~iwd~~~~~  286 (444)
                      ++|.-|....+.++..+|.|.+||++..+...  +..  ...+|..++.-      +.|.+++....+  +..|++....
T Consensus       241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~  318 (463)
T KOG1645|consen  241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSA  318 (463)
T ss_pred             eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccc
Confidence            99998877777777665699999998765332  111  12344444322      234444444333  5566654322


Q ss_pred             e----eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc----cccccCC--ce---e
Q 013347          287 S----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI----VSLTGSQ--GI---E  353 (444)
Q Consensus       287 ~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~v---~  353 (444)
                      .    ..-.+..+.+.++++++..+.++.+...+..--..+.--      +.....++..+    .+..+..  ++   .
T Consensus       319 ~~~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il------~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~  392 (463)
T KOG1645|consen  319 ECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFIL------GRIDFRDGFPVCGKRRTYFGSKQTKLSTTQ  392 (463)
T ss_pred             cCCCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeee------eeeccccCceeeeecccccCCccccccccc
Confidence            1    112234566777888887777776544321110000000      00000011100    0110100  00   1


Q ss_pred             EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeee
Q 013347          354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  433 (444)
Q Consensus       354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~  433 (444)
                      .+.=.++.++|+.-+.+.     +.+.+||..+.++...     +.- ..+|.++....-   ..+++|++ ..+.++.+
T Consensus       393 ai~~~~~nn~iv~~gd~t-----n~lil~D~~s~evvQ~-----l~~-~epv~Dicp~~~---n~~syLa~-LTd~~v~I  457 (463)
T KOG1645|consen  393 AIRAVEDNNYIVVVGDST-----NELILQDPHSFEVVQT-----LAL-SEPVLDICPNDT---NGSSYLAL-LTDDRVHI  457 (463)
T ss_pred             ceeccccccEEEEecCCc-----ceeEEeccchhheeee-----ccc-Ccceeecceeec---CCcchhhh-eecceEEE
Confidence            111235666666555443     8999999998877632     222 356665554321   22334433 45667776


Q ss_pred             ee
Q 013347          434 YP  435 (444)
Q Consensus       434 ~~  435 (444)
                      |.
T Consensus       458 yk  459 (463)
T KOG1645|consen  458 YK  459 (463)
T ss_pred             Ee
Confidence            65

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.11  E-value=0.0088  Score=56.30  Aligned_cols=182  Identities=11%  Similarity=0.093  Sum_probs=112.0

Q ss_pred             eEEEEEcCCCCcee--eecCCCCeEEEEEec-CCCeEEEE----ecCCc----EEEEECCCCceec----cccCCCceeE
Q 013347          235 SFTIWDVAQGLGTP--IRRGFGGLSILKWSP-TGDYFFAA----KFDGT----FYLWETNTWTSEP----WSSTSGFVTG  299 (444)
Q Consensus       235 ~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp-~~~~l~~~----~~d~~----v~iwd~~~~~~~~----~~~~~~~v~~  299 (444)
                      .+.++.+..++...  ....+....++.|+- +.+.+.+.    +.+|.    -.+|+...++.+.    .....+.+.+
T Consensus       185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~  264 (545)
T PF11768_consen  185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC  264 (545)
T ss_pred             cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence            56666665553322  223345557788886 34445433    33442    4567777666532    2367888999


Q ss_pred             EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccce
Q 013347          300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL  378 (444)
Q Consensus       300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~  378 (444)
                      ++++|+...++.|+.+ +.+..++..               ..+....... ..+.++|+|+|.++++|+..      |.
T Consensus       265 ca~sp~E~kLvlGC~D-gSiiLyD~~---------------~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q------Ge  322 (545)
T PF11768_consen  265 CARSPSEDKLVLGCED-GSIILYDTT---------------RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ------GE  322 (545)
T ss_pred             EecCcccceEEEEecC-CeEEEEEcC---------------CCeeeeeeecccceEEEEcCCCcEEEEEcCC------ce
Confidence            9999999999988765 445555531               1122222233 67889999999999999988      99


Q ss_pred             EEEEEcCCCCeEEEE------E-----eeeeeCCCCCCcceeeeeCCCC--------CCCceEEEEeccceeeeeeeee
Q 013347          379 IAIYDARRTPLISLS------L-----IGFIRGPGDNPKPVAFSFHDKF--------KQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       379 i~vwd~~~~~~~~~~------~-----~~~~~~~~~~i~~v~~spdg~~--------~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +++||+.-..+....      +     ...+-.+...+..+.|++....        ....+|.+..+.|-+.+..+..
T Consensus       323 lQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~GPl~vl~~~~  401 (545)
T PF11768_consen  323 LQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFERGPLAVLRFKL  401 (545)
T ss_pred             EEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcCCCeEEEEEee
Confidence            999998643322100      0     1111134556778888854322        2234777888888887766543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=9.2e-05  Score=71.57  Aligned_cols=155  Identities=16%  Similarity=0.242  Sum_probs=98.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+++++|+|..-.||.|-.-|.+.+|...+  +........|..+|..+.||++|+.++++..-|.|.+|..+..+..+.
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~  138 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT  138 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCC--ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence            467899999999999999999999999885  344444468999999999999999888887789999999984443322


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe------EEEEeeCCCeEE-EEEcCCCCceeeecCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY------LASASYESSSFT-IWDVAQGLGTPIRRGF  253 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~------l~~~~~d~~~i~-iwd~~~~~~~~~~~~~  253 (444)
                      ..-                  ....+..|  -...|...++++.-      .++++.+. .+- .++.+.........+ 
T Consensus       139 ~~~------------------~~hel~~~--ltl~cfRL~~~~Ee~~~laKaaVtgDe~-alD~~fnwk~~~a~rs~~k-  196 (1416)
T KOG3617|consen  139 SNI------------------MQHELNDQ--LTLWCFRLSYDREEKFKLAKAAVTGDES-ALDEPFNWKESLAERSDEK-  196 (1416)
T ss_pred             chh------------------hhhHhhce--eeEEEEecCCChHHhhhhhhhhccCchh-hhcccccCccchhhccccc-
Confidence            111                  01112222  23455666676432      23333333 332 232221110000000 


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  285 (444)
                            .=.|+|..++.++.+|+|+..|-...
T Consensus       197 ------sgv~~g~~F~~~~~~GtVyyvdq~g~  222 (1416)
T KOG3617|consen  197 ------SGVPKGTEFLFAGKSGTVYYVDQNGR  222 (1416)
T ss_pred             ------cCCCCCcEEEEEcCCceEEEEcCCCc
Confidence                  11468888888899999988875543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.09  E-value=0.0067  Score=54.06  Aligned_cols=234  Identities=14%  Similarity=0.093  Sum_probs=124.7

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (444)
Q Consensus       109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  188 (444)
                      ..++.|+.|+.+| +.+++...........   +...|..+...++-+.+ .+-.|+.++++++..-............ 
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---~~~~I~ql~vl~~~~~l-lvLsd~~l~~~~L~~l~~~~~~~~~~~~-   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---KLSSITQLSVLPELNLL-LVLSDGQLYVYDLDSLEPVSTSAPLAFP-   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe---ecceEEEEEEecccCEE-EEEcCCccEEEEchhhcccccccccccc-
Confidence            4578899998888 8888884323333332   23349999999984444 4445699999998833222210000000 


Q ss_pred             ccccccCCCCceEEEEEeeccCCCceEEEE--EccCCCeEEEEeeCCCeEEEEEcCCC-----CceeeecCCCCeEEEEE
Q 013347          189 LGALSRGPGTRWTLVDFLRSQNGEQITALS--WGPDGRYLASASYESSSFTIWDVAQG-----LGTPIRRGFGGLSILKW  261 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~  261 (444)
                             ...  .....+.  ....+...+  -...+...+...... .|.+|.....     ...........+.+++|
T Consensus        79 -------~~~--~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~  146 (275)
T PF00780_consen   79 -------KSR--SLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLPDPPSSIAF  146 (275)
T ss_pred             -------ccc--ccccccc--ccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcCCCcEEEEE
Confidence                   000  0000011  113444444  123344444444554 8999887763     12233445688999999


Q ss_pred             ecCCCeEEEEecCCcEEEEECCCCceeccccC-------------CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          262 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSST-------------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       262 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      .  ++.++.|.. +...+.|+.++....+...             ..++..+.. +++++|++ .++   .+.+--.   
T Consensus       147 ~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~---~g~fv~~---  215 (275)
T PF00780_consen  147 L--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDN---IGVFVNK---  215 (275)
T ss_pred             e--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecc---eEEEEcC---
Confidence            8  566777764 4588899998776544311             112333333 34555553 221   2222111   


Q ss_pred             CCcCCCcCCCCccccc--ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          329 PSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                                .+...+  .+.=...+.++++  ...||++...       +.|.||++.+++++
T Consensus       216 ----------~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-------~~iEV~~~~~~~lv  260 (275)
T PF00780_consen  216 ----------NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-------NSIEVRSLETGELV  260 (275)
T ss_pred             ----------CCCcCcccEEEcCCchhEEEE--ECCEEEEECC-------CEEEEEECcCCcEE
Confidence                      111111  1111113455665  3457777655       46999999998876

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0012  Score=64.34  Aligned_cols=191  Identities=13%  Similarity=0.129  Sum_probs=122.6

Q ss_pred             EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347          150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA  229 (444)
Q Consensus       150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  229 (444)
                      +|++.++.++.+..+|.|.+.+-..                          ...+.++.+..+-|..+....+..+|++.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~--------------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv   83 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF--------------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSV   83 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc--------------------------eeeehheecchhhhhHhhcccCceEEEEE
Confidence            3688888888888999998887541                          12344555542324444444444788888


Q ss_pred             eeCCC----eEEEEEcCCC------Cce---eeecC-----CCCeEEEEEecCCCeEEEEecCCcEEEEECCC----C-c
Q 013347          230 SYESS----SFTIWDVAQG------LGT---PIRRG-----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----W-T  286 (444)
Q Consensus       230 ~~d~~----~i~iwd~~~~------~~~---~~~~~-----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----~-~  286 (444)
                      +.|++    .+++|+++..      .+.   ++..+     ..++.+++.+.+-+.++.|-.+|.|..+.-+-    + +
T Consensus        84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr  163 (933)
T KOG2114|consen   84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR  163 (933)
T ss_pred             eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc
Confidence            88875    6999998753      122   23332     35688999999988999999999999884321    1 1


Q ss_pred             eeccccCCCceeEEEECCCCCE-EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-E
Q 013347          287 SEPWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-R  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~  363 (444)
                      .........+|+.+++..++.. ++++..  ..+..+.+.+            ..+....+..|+ .+.+.++++... +
T Consensus       164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt--~~V~~y~l~g------------r~p~~~~ld~~G~~lnCss~~~~t~qf  229 (933)
T KOG2114|consen  164 QDYSHRGKEPITGLALRSDGKSVLFVATT--EQVMLYSLSG------------RTPSLKVLDNNGISLNCSSFSDGTYQF  229 (933)
T ss_pred             eeeeccCCCCceeeEEecCCceeEEEEec--ceeEEEEecC------------CCcceeeeccCCccceeeecCCCCccE
Confidence            1223355678999999988887 333333  2344444322            123344566666 788888887655 4


Q ss_pred             EEEEecCCCccccceEEEEEcCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      +++++        ..+.+|+.....
T Consensus       230 Ica~~--------e~l~fY~sd~~~  246 (933)
T KOG2114|consen  230 ICAGS--------EFLYFYDSDGRG  246 (933)
T ss_pred             EEecC--------ceEEEEcCCCcc
Confidence            54443        469999987533

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.04  E-value=0.00017  Score=70.41  Aligned_cols=181  Identities=12%  Similarity=0.171  Sum_probs=116.6

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ++..++.|+....+..+|+.+ .+..... .-....|+-|.  .+++.++++...|+|.+-|.+                
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~-~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~----------------  205 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNT-EKETRTT-NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN----------------  205 (1118)
T ss_pred             CCcceeecchhhheeeeeccc-ceeeeee-eccCCceEEEE--ecCcEEEeecccceEEeecCC----------------
Confidence            344566666666777778876 3333322 12222355443  444566666667999999987                


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC--------eEEEEEcCCCCceeeecCCCCeEEEEE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--------SFTIWDVAQGLGTPIRRGFGGLSILKW  261 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--------~i~iwd~~~~~~~~~~~~~~~v~~~~~  261 (444)
                               ....++++..|. +.|.++..  .|+.|++++...+        -|+|||++..+.+.-........-+.|
T Consensus       206 ---------s~~~iht~~aHs-~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf  273 (1118)
T KOG1275|consen  206 ---------SFETIHTFDAHS-GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRF  273 (1118)
T ss_pred             ---------cCceeeeeeccc-cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhh
Confidence                     234677888886 77877654  7889998875431        589999998765543332333356778


Q ss_pred             ecC-CCeEEEEecCCcEEEEEC---CCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          262 SPT-GDYFFAAKFDGTFYLWET---NTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       262 sp~-~~~l~~~~~d~~v~iwd~---~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      +|. ...+++++..|...+-|.   .+...  ..+......+..+.+++++..++++...    +.+++|.
T Consensus       274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~----g~v~~wa  340 (1118)
T KOG1275|consen  274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE----GHVNLWA  340 (1118)
T ss_pred             cccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc----CcEeeec
Confidence            885 456788888999999994   33322  2233445569999999999999987332    4455554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.04  E-value=0.00017  Score=70.44  Aligned_cols=151  Identities=13%  Similarity=0.110  Sum_probs=96.6

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEec---------CCcEEEEEC
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF---------DGTFYLWET  282 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~---------d~~v~iwd~  282 (444)
                      .|.-+.  .+++.+.+|...| +|.+-|.++.+.+. +..|.+.+.++..  .|+.|++++.         |.-|+|||+
T Consensus       179 ~v~imR--~Nnr~lf~G~t~G-~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  179 GVTIMR--YNNRNLFCGDTRG-TVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             ceEEEE--ecCcEEEeecccc-eEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence            344444  3678899998887 99999999988776 6678888877655  6899998875         456899999


Q ss_pred             CCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc--cccCC-ceeEEEECC
Q 013347          283 NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS--LTGSQ-GIEKIAWDA  359 (444)
Q Consensus       283 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~v~~~~~sp  359 (444)
                      +.-+...-........-+.|+|.-...++.++..+....++--..           ..+....  +.... .+..+.+|+
T Consensus       254 Rmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l-----------sNP~~~~~~v~p~~s~i~~fDiSs  322 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL-----------SNPPAGVKMVNPNGSGISAFDISS  322 (1118)
T ss_pred             hhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc-----------CCCccceeEEccCCCcceeEEecC
Confidence            976653211222222456777764332222233344444441000           1111111  11112 589999999


Q ss_pred             CCCEEEEEecCCCccccceEEEEEcC
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +|+.||.+..+      |.|.+|.-.
T Consensus       323 n~~alafgd~~------g~v~~wa~~  342 (1118)
T KOG1275|consen  323 NGDALAFGDHE------GHVNLWADR  342 (1118)
T ss_pred             CCceEEEeccc------CcEeeecCC
Confidence            99999999888      999999843

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.97  E-value=0.0055  Score=52.82  Aligned_cols=194  Identities=20%  Similarity=0.232  Sum_probs=106.3

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      +-...+..++|+|+.+.|+++... +.|..++.+ ++....+                       .+.+  .+..-.+++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-----------------------~l~g--~~D~EgI~y   72 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-----------------------PLDG--FGDYEGITY   72 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-----------------------E-SS---SSEEEEEE
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-----------------------eCCC--CCCceeEEE
Confidence            445569999999998888888775 677666654 2111111                       1333  257888999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCc-------eeee-----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC--C
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLG-------TPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT--W  285 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~-------~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~--~  285 (444)
                      .-++.++++.-.++ .+.++++.....       ..+.     .++..+-.++|+|.++.|+.+.+..-..+|.++.  .
T Consensus        73 ~g~~~~vl~~Er~~-~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~  151 (248)
T PF06977_consen   73 LGNGRYVLSEERDQ-RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG  151 (248)
T ss_dssp             -STTEEEEEETTTT-EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred             ECCCEEEEEEcCCC-cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence            88887666554566 899998843211       1111     1345689999999988887787777667776654  1


Q ss_pred             -ce-e-----cc---ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc--cccc-----
Q 013347          286 -TS-E-----PW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV--SLTG-----  348 (444)
Q Consensus       286 -~~-~-----~~---~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----  348 (444)
                       .. .     .+   ......+.+++++|....+++-++.+..+-.++.              ++..+.  .+..     
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~--------------~G~~~~~~~L~~g~~gl  217 (248)
T PF06977_consen  152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR--------------QGRVVSSLSLDRGFHGL  217 (248)
T ss_dssp             SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T--------------T--EEEEEE-STTGGG-
T ss_pred             ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC--------------CCCEEEEEEeCCcccCc
Confidence             11 0     11   1234457899999987777766677666665552              111111  1111     


Q ss_pred             -CC--ceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          349 -SQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       349 -~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                       ..  ..-.|+|.++|++.++ ++.      +..++|
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIv-sEp------Nlfy~f  247 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIV-SEP------NLFYRF  247 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEE-ETT------TEEEEE
T ss_pred             ccccCCccEEEECCCCCEEEE-cCC------ceEEEe
Confidence             11  4678999999975554 555      666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.95  E-value=0.0024  Score=56.71  Aligned_cols=240  Identities=11%  Similarity=0.122  Sum_probs=121.3

Q ss_pred             EEEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeE-EecCCC----CCeEEEEEeeCCCeEEEEecC--C
Q 013347          103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACI-LTSDSQ----RDVKVLEWRPNGGRSLSVGCK--G  165 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~-~~~~~~----~~v~~l~~s~~~~~ll~~~~d--g  165 (444)
                      -.+..+||++.+++++          ..-.|.+||..+-.....+ +...|.    .....++++.|++.+++.-..  .
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3477899999988754          3346999999874111111 111111    122335677776666655443  6


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-C
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-G  244 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~  244 (444)
                      .|.|-|+...+....+...                           + . ...+-...+.+.+-+.|| .+.-..+.. +
T Consensus       119 SVtVVDl~~~kvv~ei~~P---------------------------G-C-~~iyP~~~~~F~~lC~DG-sl~~v~Ld~~G  168 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTP---------------------------G-C-WLIYPSGNRGFSMLCGDG-SLLTVTLDADG  168 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGT---------------------------S-E-EEEEEEETTEEEEEETTS-CEEEEEETSTS
T ss_pred             eEEEEECCCCceeeeecCC---------------------------C-E-EEEEecCCCceEEEecCC-ceEEEEECCCC
Confidence            7777777744333333222                           1 1 111211223466777787 777777763 3


Q ss_pred             Cceeee-----cCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccC----------CCceeEEEECCC
Q 013347          245 LGTPIR-----RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSST----------SGFVTGATWDPE  305 (444)
Q Consensus       245 ~~~~~~-----~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~----------~~~v~~~~~sp~  305 (444)
                      +.....     ....++ ..-++...+..++-.+.+|.|+-.|+.......   +...          .+.-.-+++++.
T Consensus       169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~  248 (342)
T PF06433_consen  169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA  248 (342)
T ss_dssp             SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred             CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence            332111     111222 244555555556557788999988887765421   1100          111233455544


Q ss_pred             CCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCccc
Q 013347          306 GRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIY  375 (444)
Q Consensus       306 g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~~  375 (444)
                      ...|++....         ...+|.+++             .+.+.+..+....++.+|+++.|.+ +|++.+...    
T Consensus       249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~-------------~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~----  311 (342)
T PF06433_consen  249 SGRLYVLMHQGGEGSHKDPGTEVWVYDL-------------KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD----  311 (342)
T ss_dssp             TTEEEEEEEE--TT-TTS-EEEEEEEET-------------TTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT----
T ss_pred             cCeEEEEecCCCCCCccCCceEEEEEEC-------------CCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC----
Confidence            4333332110         012222222             1334444454333688999999876 565554431    


Q ss_pred             cceEEEEEcCCCCeE
Q 013347          376 KGLIAIYDARRTPLI  390 (444)
Q Consensus       376 d~~i~vwd~~~~~~~  390 (444)
                       +.+.+||..+++.+
T Consensus       312 -~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  312 -GTLDVYDAATGKLV  325 (342)
T ss_dssp             -TEEEEEETTT--EE
T ss_pred             -CeEEEEeCcCCcEE
Confidence             89999999998876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.88  E-value=0.0024  Score=60.22  Aligned_cols=141  Identities=16%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      .-....++++|+| ++++.+.+|...|+.....                         .-.  .    .+.-..++|.+.
T Consensus        32 ~~~p~~ls~npng-r~v~V~g~geY~iyt~~~~-------------------------r~k--~----~G~g~~~vw~~~   79 (443)
T PF04053_consen   32 EIYPQSLSHNPNG-RFVLVCGDGEYEIYTALAW-------------------------RNK--A----FGSGLSFVWSSR   79 (443)
T ss_dssp             SS--SEEEE-TTS-SEEEEEETTEEEEEETTTT-------------------------EEE--E----EEE-SEEEE-TS
T ss_pred             CcCCeeEEECCCC-CEEEEEcCCEEEEEEccCC-------------------------ccc--c----cCceeEEEEecC
Confidence            3457889999995 5555588888888883310                         000  0    134467889886


Q ss_pred             CCeEEEEeeCCCeEEEE-EcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEE
Q 013347          223 GRYLASASYESSSFTIW-DVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGAT  301 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iw-d~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~  301 (444)
                      ++ +|+-...+ +|.++ +++......+ .....+..+-.   |..|+..+. +.|.+||+.+++........ .|..+.
T Consensus        80 n~-yAv~~~~~-~I~I~kn~~~~~~k~i-~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~  151 (443)
T PF04053_consen   80 NR-YAVLESSS-TIKIYKNFKNEVVKSI-KLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVI  151 (443)
T ss_dssp             SE-EEEE-TTS--EEEEETTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEE
T ss_pred             cc-EEEEECCC-eEEEEEcCccccceEE-cCCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEE
Confidence            55 55555555 89996 4433321222 22223444422   887777664 48999999998875443333 389999


Q ss_pred             ECCCCCEEEEEEcCCceEEEEE
Q 013347          302 WDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       302 ~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      |+++|++++..+.+...+...+
T Consensus       152 Ws~~g~~val~t~~~i~il~~~  173 (443)
T PF04053_consen  152 WSDDGELVALVTKDSIYILKYN  173 (443)
T ss_dssp             E-TTSSEEEEE-S-SEEEEEE-
T ss_pred             EECCCCEEEEEeCCeEEEEEec
Confidence            9999999998876554443333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.87  E-value=1.8e-05  Score=73.92  Aligned_cols=199  Identities=19%  Similarity=0.250  Sum_probs=123.8

Q ss_pred             CCeEEEEEeeCCC-eEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347          144 RDVKVLEWRPNGG-RSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (444)
Q Consensus       144 ~~v~~l~~s~~~~-~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (444)
                      ..+.|+++.-+.. .++++| .+|.|.+-.+..+....                       .....++ ....++++|++
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------------~E~tp~~-ar~Ct~lAwne  112 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------------AEVTPGY-ARPCTSLAWNE  112 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------------ceecccc-ccccccccccc
Confidence            3566777665433 455554 46999888876332220                       1112333 36889999998


Q ss_pred             -CCCeEEEEe----eCCCeEEEEEcCCCCcee-----eec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347          222 -DGRYLASAS----YESSSFTIWDVAQGLGTP-----IRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW  290 (444)
Q Consensus       222 -~~~~l~~~~----~d~~~i~iwd~~~~~~~~-----~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  290 (444)
                       |.++||.|-    .|. .+.|||+.+.-..+     +.. ......+++|..+.+++++|...+.+.++|++.......
T Consensus       113 LDtn~LAagldkhrnds-~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~  191 (783)
T KOG1008|consen  113 LDTNHLAAGLDKHRNDS-SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS  191 (783)
T ss_pred             ccHHHHHhhhhhhcccC-CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh
Confidence             677777763    233 79999998773221     112 234556889998889999999999999999985443333


Q ss_pred             ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-----ceeEEEECCCC-CE
Q 013347          291 SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASG-ER  363 (444)
Q Consensus       291 ~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg-~~  363 (444)
                      ......+..+..+| .+.+++...  ++.+..|+-   ....        ..++..+....     .+..++|+|.. ..
T Consensus       192 svnTk~vqG~tVdp~~~nY~cs~~--dg~iAiwD~---~rni--------enpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  192 SVNTKYVQGITVDPFSPNYFCSNS--DGDIAIWDT---YRNI--------ENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hhhhhhcccceecCCCCCceeccc--cCceeeccc---hhhh--------ccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            33344567788888 677776433  344444441   1111        11122222111     48899999965 46


Q ss_pred             EEEEecCCCccccceEEEEEcC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +++...|+     ++|+++|+.
T Consensus       259 la~l~RdS-----~tIrlydi~  275 (783)
T KOG1008|consen  259 LAVLSRDS-----ITIRLYDIC  275 (783)
T ss_pred             hhhhccCc-----ceEEEeccc
Confidence            77788776     899999985

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.00027  Score=68.53  Aligned_cols=108  Identities=19%  Similarity=0.327  Sum_probs=78.3

Q ss_pred             EEEEecCCCeEEEEE----CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCc
Q 013347          104 GVSWHQHKHIVAFIS----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (444)
Q Consensus       104 ~~~~sp~g~~la~~~----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~  178 (444)
                      -.+|+|...++|+++    ..|.|.||- ++ |.+..-.  .-.-.+++++|+|. ..+++.+.. |.+.+|.....+.-
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~V--t~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDV--TYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCccc--ccceehhhhccChH-HHHHhhccccceeEEEecCCceee
Confidence            368999999999887    568899884 33 3333222  12234567999999 677777765 99999998732211


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                                               .....| ..++..+.||++|..++++..-| .|.+|....
T Consensus        95 -------------------------tv~~th-~a~i~~l~wS~~G~~l~t~d~~g-~v~lwr~d~  132 (1416)
T KOG3617|consen   95 -------------------------TVVETH-PAPIQGLDWSHDGTVLMTLDNPG-SVHLWRYDV  132 (1416)
T ss_pred             -------------------------eeccCC-CCCceeEEecCCCCeEEEcCCCc-eeEEEEeee
Confidence                                     112234 48999999999999999999988 999998763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.012  Score=52.65  Aligned_cols=225  Identities=14%  Similarity=0.154  Sum_probs=118.9

Q ss_pred             EEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347          105 VSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       105 ~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      -.|.++...|+... ..+.|.-|+..+ ++....   .+.+.+.++..-.+++.|+++.  ..+.+++.+.......+..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~-g~~~~~---~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPET-GKKRVF---PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCc-CceEEE---ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence            45778777666554 677788888775 333222   3344556665555545555443  3344555542222111111


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-----C---CCeEEEEEcC-CCCceeeec-CC
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----E---SSSFTIWDVA-QGLGTPIRR-GF  253 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d---~~~i~iwd~~-~~~~~~~~~-~~  253 (444)
                                           ...+......+.+...|+|.+-+....     .   ...-.+|.+. .+....+.. +-
T Consensus       104 ---------------------~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~  162 (307)
T COG3386         104 ---------------------PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL  162 (307)
T ss_pred             ---------------------ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence                                 112222346678888899887665433     0   0012344444 344444333 24


Q ss_pred             CCeEEEEEecCCCeEEEEec-CCcEEEEECCC--Cce------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          254 GGLSILKWSPTGDYFFAAKF-DGTFYLWETNT--WTS------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~--~~~------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      ..-+.++||||++.|+.+.. .+.|.-|++..  +..      .......+..-.++...+|.+.+.+..+...+..+.-
T Consensus       163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            55678999999998866654 47888887753  111      1111233445556666666665433332222222221


Q ss_pred             ecCCCCcCCCcCCCCcccccccccC-CceeEEEEC-CCCCEEEEEecC
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWD-ASGERLAVSYKG  370 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s-pdg~~l~~~~~d  370 (444)
                                    +++.+..+.-. ..+++++|- |+.+.|.+.+..
T Consensus       243 --------------dG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         243 --------------DGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             --------------CCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence                          34455555544 367777774 566666666554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.80  E-value=0.0071  Score=60.44  Aligned_cols=112  Identities=11%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             EEEEeeccCCCceEEEEEcc-----CCCeEEEEeeCCCeEEEEEcCCCC--cee----eecCCCCeEEEEEecCCCeEEE
Q 013347          202 LVDFLRSQNGEQITALSWGP-----DGRYLASASYESSSFTIWDVAQGL--GTP----IRRGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       202 ~~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~~i~iwd~~~~~--~~~----~~~~~~~v~~~~~sp~~~~l~~  270 (444)
                      ++..+..+...+|..++-..     .....+.|-.++ .+..||.+-..  ...    .........|++-+.+| +||+
T Consensus       516 VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iav  593 (794)
T PF08553_consen  516 VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAV  593 (794)
T ss_pred             EEEEeecCCCcceeEecccccccccCCCceEEEECCC-ceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEE
Confidence            44445555433454443221     122334555555 89999988643  121    11234567788888777 6899


Q ss_pred             EecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcC
Q 013347          271 AKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       271 ~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      |+.+|.||+||--....+ .+++...+|..+..+.||+||+++|..
T Consensus       594 gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  594 GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            999999999995433333 355778999999999999999988764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.80  E-value=0.011  Score=52.85  Aligned_cols=178  Identities=16%  Similarity=0.216  Sum_probs=103.8

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-eeeecC-----CCCeEEEEEecCCCeEEEEec-----------CC
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG-TPIRRG-----FGGLSILKWSPTGDYFFAAKF-----------DG  275 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~~-----~~~v~~~~~sp~~~~l~~~~~-----------d~  275 (444)
                      .+.++..-..+..|+++ ..  -+.+++.+++.. ..+...     ......+...|+|++.++...           -|
T Consensus        67 ~~~~~~~~d~~g~Lv~~-~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G  143 (307)
T COG3386          67 GFSSGALIDAGGRLIAC-EH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG  143 (307)
T ss_pred             CcccceeecCCCeEEEE-cc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence            34444443344444443 33  377788766655 222221     145667888999987665433           13


Q ss_pred             cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc-ccccccCC-cee
Q 013347          276 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIE  353 (444)
Q Consensus       276 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~  353 (444)
                      .|+.+|........+..+-..-+.++||||++.++++-+...+++.+.+....    ..+   .... ...+.... ..-
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~----g~~---~~~~~~~~~~~~~G~PD  216 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT----GPI---GGRRGFVDFDEEPGLPD  216 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc----Ccc---CCcceEEEccCCCCCCC
Confidence            45555653333344445566679999999999999887766777777654210    000   1111 11111112 456


Q ss_pred             EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      .++...+|.+-+++..++     +.|.+|+.+ ++++     ..+.-+...+++++|-
T Consensus       217 G~~vDadG~lw~~a~~~g-----~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         217 GMAVDADGNLWVAAVWGG-----GRVVRFNPD-GKLL-----GEIKLPVKRPTNPAFG  263 (307)
T ss_pred             ceEEeCCCCEEEecccCC-----ceEEEECCC-CcEE-----EEEECCCCCCccceEe
Confidence            777888888876554441     489999999 6665     4455555677888885

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.74  E-value=0.024  Score=53.43  Aligned_cols=66  Identities=15%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             EEEEecCCCeEEEEECC----------C-eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEec
Q 013347          104 GVSWHQHKHIVAFISGS----------T-QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~d----------g-~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~  172 (444)
                      .++.+|.|-.||....+          . .|.||+..  |+....+.-.+ +.+.++.|+.+ ..|++...||.+++||+
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDL  108 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeC
Confidence            34566666666665433          1 48888877  55555443344 78999999987 88999999999999998


Q ss_pred             C
Q 013347          173 S  173 (444)
Q Consensus       173 ~  173 (444)
                      .
T Consensus       109 ~  109 (410)
T PF04841_consen  109 F  109 (410)
T ss_pred             C
Confidence            6

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.68  E-value=0.052  Score=51.21  Aligned_cols=222  Identities=10%  Similarity=-0.029  Sum_probs=112.7

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCCC---------CeE-EEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---------DVK-VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---------~v~-~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +..+++++.+|.+.-+|..+ ++...........         .+. .+..  +++.+++++.++.+.-+|.++++....
T Consensus        69 ~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADT-GKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCC-CcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            44566666677777777766 4433332111100         010 1111  236777777889999999885544332


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEE-EEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe---
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL---  256 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v---  256 (444)
                      ....                           ..+.+ ...  .+..++.+..++ .+.-+|.++++.........+.   
T Consensus       146 ~~~~---------------------------~~~~ssP~v--~~~~v~v~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        146 TKVA---------------------------GEALSRPVV--SDGLVLVHTSNG-MLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             ccCC---------------------------CceecCCEE--ECCEEEEECCCC-EEEEEEccCCCEeeeecCCCCcccc
Confidence            2211                           11111 111  234556666776 8999999998876544332111   


Q ss_pred             ---EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccC---C--C---ceeEEEECC--CCCEEEEEEcCCceEEEEE
Q 013347          257 ---SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST---S--G---FVTGATWDP--EGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       257 ---~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~--~---~v~~~~~sp--~g~~l~~~~~~~~~~~~~~  323 (444)
                         .+...  .+..++.++.++.+..+|..+++.......   .  .   ....+.-+|  .+..++++. .++.+..++
T Consensus       196 ~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald  272 (394)
T PRK11138        196 RGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALD  272 (394)
T ss_pred             cCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEE
Confidence               11111  133566677889999999998876322110   0  0   011111122  233444433 335666666


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ..+..     .+|...      +.   ....+.  .++..|++++.+      +.+..+|.++++.+
T Consensus       273 ~~tG~-----~~W~~~------~~---~~~~~~--~~~~~vy~~~~~------g~l~ald~~tG~~~  317 (394)
T PRK11138        273 LRSGQ-----IVWKRE------YG---SVNDFA--VDGGRIYLVDQN------DRVYALDTRGGVEL  317 (394)
T ss_pred             CCCCC-----EEEeec------CC---CccCcE--EECCEEEEEcCC------CeEEEEECCCCcEE
Confidence            43221     011110      00   011111  245667777766      89999999988765

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.63  E-value=0.0065  Score=59.67  Aligned_cols=148  Identities=16%  Similarity=0.232  Sum_probs=82.8

Q ss_pred             CCeEEEEEecCCCeEEEEe------cCC--cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          254 GGLSILKWSPTGDYFFAAK------FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~------~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ..+.+.+++|+|+.++...      .|.  .|.+++... ....+... ...+...|+|+|+.|++..+.+...   .+.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~---~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVV---RVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC-CCCCCceECCCCCceEEEecCcceE---EEe
Confidence            4678899999999886554      233  566666533 23333322 2388899999999888765432211   111


Q ss_pred             cCCCCcCCCcC--CCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEE---EEcCCCCeEEEEEeeeeeC
Q 013347          326 SKPPSLDAHLL--PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       326 ~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v---wd~~~~~~~~~~~~~~~~~  400 (444)
                      ....  ...++  ......... .....|..+.|||||+.|+... +      +.|++   -....|......+.....+
T Consensus       425 ~~~~--~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~------g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        425 RDPA--TGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-G------GKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             ccCC--CceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-C------CEEEEEEEEeCCCCceeecccEEeecc
Confidence            1100  01111  112222222 1122699999999999998876 3      67777   4545554221222211223


Q ss_pred             CCCCCcceeeeeCCCC
Q 013347          401 PGDNPKPVAFSFHDKF  416 (444)
Q Consensus       401 ~~~~i~~v~~spdg~~  416 (444)
                      -...+.++.|..++++
T Consensus       495 l~~~~~~l~W~~~~~L  510 (591)
T PRK13616        495 LGDTAVSLDWRTGDSL  510 (591)
T ss_pred             cCCccccceEecCCEE
Confidence            3444678999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.62  E-value=0.011  Score=51.32  Aligned_cols=186  Identities=13%  Similarity=-0.015  Sum_probs=104.9

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (444)
Q Consensus       109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  188 (444)
                      +++..+++++.++.+..||..+ ++.......  ...+..... .+++.+++...++.++.+|..+++........    
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~--~~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~----  105 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDL--PGPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT----  105 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTT-SEEEEEEEC--SSCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-----
T ss_pred             EeCCEEEEEcCCCEEEEEECCC-CCEEEEeec--cccccceee-ecccccccccceeeeEecccCCcceeeeeccc----
Confidence            3566677778999999999987 555444432  222222122 33367777778889999997744432221100    


Q ss_pred             ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-C----------eE
Q 013347          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-G----------LS  257 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-~----------v~  257 (444)
                                      .....  ..........++..++.+..++ .|..+|+++++.+....... .          +.
T Consensus       106 ----------------~~~~~--~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen  106 ----------------SSPPA--GVRSSSSPAVDGDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN  166 (238)
T ss_dssp             ----------------SSCTC--STB--SEEEEETTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred             ----------------ccccc--ccccccCceEecCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence                            00000  1112222223377787777777 99999999998765332221 1          11


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      .-....++ .++.++.++.+.-+|+.+++... ......+... ....+..++++. .++.+..+++.
T Consensus       167 ~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~  230 (238)
T PF13360_consen  167 GSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLK  230 (238)
T ss_dssp             EEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETT
T ss_pred             cceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECC
Confidence            22222244 67777777764444999998653 3222333331 346677777665 56777877753

...

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.00036  Score=65.50  Aligned_cols=92  Identities=18%  Similarity=0.227  Sum_probs=73.3

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE-EEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW  290 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  290 (444)
                      ..+.-+.|+|.-..+|.+..+| .|.+..+.-.+.-.+..+...++ +++|.|||+.|+.|-.||+|++.|..++....-
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~g-elli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKG-ELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCC-cEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4678899999999999999998 99999988433333443556666 999999999999999999999999998876332


Q ss_pred             --ccCCCceeEEEECC
Q 013347          291 --SSTSGFVTGATWDP  304 (444)
Q Consensus       291 --~~~~~~v~~~~~sp  304 (444)
                        ......|.++-|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence              34456778888864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.59  E-value=0.014  Score=42.75  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             eEEEEEee---CC-CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347          146 VKVLEWRP---NG-GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (444)
Q Consensus       146 v~~l~~s~---~~-~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (444)
                      |++|++..   || ..|++++.|..|++|+-+                           .++..+...  ..|+++.-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------------------------e~~~Ei~e~--~~v~~L~~~~   52 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------------------------EIVAEITET--DKVTSLCSLG   52 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------------------------cEEEEEecc--cceEEEEEcC
Confidence            56676654   22 468888999999999976                           233444443  5788888776


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec-C--C-CeEEEEecCCcEE
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-T--G-DYFFAAKFDGTFY  278 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~--~-~~l~~~~~d~~v~  278 (444)
                      . ..++++-.+| +|-+|+-..  .......+..+.++++.. +  | ..|++|-.+|.|-
T Consensus        53 ~-~~F~Y~l~NG-TVGvY~~~~--RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   53 G-GRFAYALANG-TVGVYDRSQ--RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             C-CEEEEEecCC-EEEEEeCcc--eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            6 5688888887 999997532  233333445577776553 2  2 3688898888764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.036  Score=46.79  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=48.4

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      -|++++.|...|.+++.+.++ +.+...+.....-.+. ....++++.+..++.|++.+..|..+.+......
T Consensus        62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            577899999999999999998 4444333222222222 3346777777778889999999988666555443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.56  E-value=0.062  Score=49.16  Aligned_cols=254  Identities=16%  Similarity=0.175  Sum_probs=120.4

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--  222 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--  222 (444)
                      ..++|+|.|| +.++++-..|.|++++.+ ......+...                   .............++++|+  
T Consensus         3 ~P~~~a~~pd-G~l~v~e~~G~i~~~~~~-g~~~~~v~~~-------------------~~v~~~~~~gllgia~~p~f~   61 (331)
T PF07995_consen    3 NPRSMAFLPD-GRLLVAERSGRIWVVDKD-GSLKTPVADL-------------------PEVFADGERGLLGIAFHPDFA   61 (331)
T ss_dssp             SEEEEEEETT-SCEEEEETTTEEEEEETT-TEECEEEEE--------------------TTTBTSTTBSEEEEEE-TTCC
T ss_pred             CceEEEEeCC-CcEEEEeCCceEEEEeCC-CcCcceeccc-------------------ccccccccCCcccceeccccC
Confidence            4678999999 567777779999999933 1111111111                   0011222367899999994  


Q ss_pred             -CCeEEE-EeeC------C-CeEEEEEcCCCC-----cee----eec---CCCCeEEEEEecCCCeEEEEecC-------
Q 013347          223 -GRYLAS-ASYE------S-SSFTIWDVAQGL-----GTP----IRR---GFGGLSILKWSPTGDYFFAAKFD-------  274 (444)
Q Consensus       223 -~~~l~~-~~~d------~-~~i~iwd~~~~~-----~~~----~~~---~~~~v~~~~~sp~~~~l~~~~~d-------  274 (444)
                       ..+|+. .+..      . ..|.-|....+.     ...    +..   .......++|.|||.+.++.+..       
T Consensus        62 ~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~  141 (331)
T PF07995_consen   62 SNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQ  141 (331)
T ss_dssp             CC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGC
T ss_pred             CCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCccccc
Confidence             233333 3321      0 135555554431     111    111   23456679999999766665533       


Q ss_pred             ------CcEEEEECCCCce-------------ecc-ccCCCceeEEEECCC-CCEEEEEEcCCceEEEEEeecCC---C-
Q 013347          275 ------GTFYLWETNTWTS-------------EPW-SSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASKP---P-  329 (444)
Q Consensus       275 ------~~v~iwd~~~~~~-------------~~~-~~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~~~~~~---~-  329 (444)
                            |.|.-.+....-.             ..+ .++ .....++|+|. |++.++-.+.+....+-.+....   + 
T Consensus       142 ~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP  220 (331)
T PF07995_consen  142 DPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWP  220 (331)
T ss_dssp             STTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred             ccccccceEEEecccCcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCC
Confidence                  2344444332100             000 122 23468999999 77666433333333333332110   0 


Q ss_pred             CcC-C-----------CcCCCCcccccccccCCceeEEEECC-------CCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          330 SLD-A-----------HLLPVDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       330 ~~~-~-----------~~~~~~~~~~~~~~~~~~v~~~~~sp-------dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ... .           ........++..+..|..+..+.|-.       .|+++++.-..      +.|....++.+..+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~------~~i~~~~~~~~~~~  294 (331)
T PF07995_consen  221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGG------GRIWRLDLDEDGSV  294 (331)
T ss_dssp             TBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTT------TEEEEEEEETTEEE
T ss_pred             CCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCC------CEEEEEeeecCCCc
Confidence            000 0           00000112333445555677777764       34455554433      77888887644332


Q ss_pred             EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                       ......+.....++..+++.|||.+     ...-..+|.|+
T Consensus       295 -~~~~~~~~~~~~r~~~v~~~pDG~L-----yv~~d~~G~iy  330 (331)
T PF07995_consen  295 -TEEEEFLGGFGGRPRDVAQGPDGAL-----YVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEECTTSSS-EEEEEEETTSEE-----EEEE-TTTTEE
T ss_pred             -cceEEccccCCCCceEEEEcCCCeE-----EEEECCCCeEe
Confidence             1222223445557899999999875     33333577775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.00068  Score=64.51  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      ..|.--+++..+++++.|+.-| .+++|+-..++...+..  ..+.+..+..+++..++|.|+..|.|.++-++......
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G-~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAG-SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccc-eEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            4565666777899999999998 99999988877665544  45666777889888888999999999999887644321


Q ss_pred             ---c----ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          290 ---W----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       290 ---~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                         +    ..|...|++++|++++..+++| +..+++....+..
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysG-D~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSG-DSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeec-CCCceEEEEEech
Confidence               1    1467889999999999999966 5557777666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.55  E-value=0.041  Score=49.13  Aligned_cols=198  Identities=13%  Similarity=0.105  Sum_probs=112.5

Q ss_pred             ceEEEEEecCCCeEEEEE--CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ....++++.||+++++..  -...|.|-|+.. .+....+  .-.++.. +-=+.+ +.+.+.|.||.+.-..++..++.
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-~kvv~ei--~~PGC~~-iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAA-KKVVGEI--DTPGCWL-IYPSGN-RGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-TEEEEEE--EGTSEEE-EEEEET-TEEEEEETTSCEEEEEETSTSSE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCC-Cceeeee--cCCCEEE-EEecCC-CceEEEecCCceEEEEECCCCCE
Confidence            345578999999988754  445788999986 3333332  2223222 212333 57889999999999999866655


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-------
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-------  251 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-------  251 (444)
                      ....+.                    .+....+.-+..-++...+..++..+.+| .|+--|+..........       
T Consensus       171 ~~~~t~--------------------~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G-~v~~~dlsg~~~~~~~~~~~~t~~  229 (342)
T PF06433_consen  171 AQKSTK--------------------VFDPDDDPLFEHPAYSRDGGRLYFVSYEG-NVYSADLSGDSAKFGKPWSLLTDA  229 (342)
T ss_dssp             EEEEEE--------------------ESSTTTS-B-S--EEETTTTEEEEEBTTS-EEEEEEETTSSEEEEEEEESS-HH
T ss_pred             eEeecc--------------------ccCCCCcccccccceECCCCeEEEEecCC-EEEEEeccCCcccccCcccccCcc
Confidence            422111                    22222212223444555555565567777 88887776654322110       


Q ss_pred             ------CCCCeEEEEEecCCCeEEEEec---CC-------cEEEEECCCCceeccccCCCceeEEEECCCCCEEE-EEEc
Q 013347          252 ------GFGGLSILKWSPTGDYFFAAKF---DG-------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL-LAFA  314 (444)
Q Consensus       252 ------~~~~v~~~~~sp~~~~l~~~~~---d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~  314 (444)
                            ..+.-.-+++++..+.|++.-.   ++       .|.++|+.+++..........+.+++.+.+.+-++ +...
T Consensus       230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~  309 (342)
T PF06433_consen  230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA  309 (342)
T ss_dssp             HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET
T ss_pred             ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC
Confidence                  1134455788876555543211   11       58888999988854443345688999999887444 4445


Q ss_pred             CCceEEEEEe
Q 013347          315 GSLTLGSIHF  324 (444)
Q Consensus       315 ~~~~~~~~~~  324 (444)
                      .++.+.+++.
T Consensus       310 ~~~~l~v~D~  319 (342)
T PF06433_consen  310 GDGTLDVYDA  319 (342)
T ss_dssp             TTTEEEEEET
T ss_pred             CCCeEEEEeC
Confidence            5666777764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.53  E-value=0.088  Score=49.97  Aligned_cols=144  Identities=19%  Similarity=0.191  Sum_probs=80.9

Q ss_pred             ceEEEEEecCC----CeEEEEECCCeEEEEEccCC----CCceeEEecCCCC----CeEEEEEeeCCCeEEEEecCCcE-
Q 013347          101 DLQGVSWHQHK----HIVAFISGSTQVIVRDYEDS----GKDACILTSDSQR----DVKVLEWRPNGGRSLSVGCKGGI-  167 (444)
Q Consensus       101 ~v~~~~~sp~g----~~la~~~~dg~v~iw~~~~~----~~~~~~~~~~~~~----~v~~l~~s~~~~~ll~~~~dg~v-  167 (444)
                      -|..++|.|-+    ..|........|.||.+...    .+.....+-....    --..+.|+|. .-++++-....+ 
T Consensus        58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCcee
Confidence            49999999953    34444578889999998743    1222211111111    2245789999 555555443333 


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-  246 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-  246 (444)
                      .++++.....                       .+...+.+  .+.|.|.+|.+||++|+.+-...=.-++||-..... 
T Consensus       137 V~~sV~~d~s-----------------------rVkaDi~~--~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~  191 (671)
T PF15390_consen  137 VLPSVHCDSS-----------------------RVKADIKT--SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLH  191 (671)
T ss_pred             EeeeeeeCCc-----------------------eEEEeccC--CceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhh
Confidence            4555542211                       11122333  378999999999999887654322567888554321 


Q ss_pred             ----eeeecCCCCeEEEEEecCCCeEEEE
Q 013347          247 ----TPIRRGFGGLSILKWSPTGDYFFAA  271 (444)
Q Consensus       247 ----~~~~~~~~~v~~~~~sp~~~~l~~~  271 (444)
                          -+++.-.+.|.++.-.-|. .+|.+
T Consensus       192 ~CsfcPVFdv~~~Icsi~AT~ds-qVAva  219 (671)
T PF15390_consen  192 RCSFCPVFDVGGYICSIEATVDS-QVAVA  219 (671)
T ss_pred             hCCcceeecCCCceEEEEEeccc-eEEEE
Confidence                1344445666666554333 34443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.51  E-value=0.083  Score=49.21  Aligned_cols=97  Identities=15%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEE-EcCCC-----Cceeeec--------CCCCeEEEEEecCCCeEEEEec----
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIW-DVAQG-----LGTPIRR--------GFGGLSILKWSPTGDYFFAAKF----  273 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iw-d~~~~-----~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~----  273 (444)
                      .....+++.++| .+ ++...  .|..| |....     +...+..        +......++|.|||++.++-+.    
T Consensus        72 ~~p~Gi~~~~~G-ly-V~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~  147 (367)
T TIGR02604        72 SMVTGLAVAVGG-VY-VATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS  147 (367)
T ss_pred             CCccceeEecCC-EE-EeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence            456889999988 44 44433  45544 44321     2222211        1234678999999987665441    


Q ss_pred             ---------------CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEE
Q 013347          274 ---------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       274 ---------------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                                     .+.|.-+|..+++...+...-.....++|+|+|+++++-
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence                           145666677766654443333446789999999887653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.037  Score=51.56  Aligned_cols=109  Identities=13%  Similarity=0.187  Sum_probs=72.2

Q ss_pred             EEEEeeccCCCceEEEEEccCCCe-------EEEEeeCCCeEEEEEcCCCCc--ee-eec----CCCCeEEEEEecCCCe
Q 013347          202 LVDFLRSQNGEQITALSWGPDGRY-------LASASYESSSFTIWDVAQGLG--TP-IRR----GFGGLSILKWSPTGDY  267 (444)
Q Consensus       202 ~~~~~~~~~~~~v~~~~~sp~~~~-------l~~~~~d~~~i~iwd~~~~~~--~~-~~~----~~~~v~~~~~sp~~~~  267 (444)
                      ++....-+.  .|.-+.+.|+.+.       -+.|-.+. .|+-||.+-...  +. ...    .+....|.+-..+| +
T Consensus       368 IVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n-~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~  443 (644)
T KOG2395|consen  368 IVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDN-SVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-Y  443 (644)
T ss_pred             eeeEeeccC--CcceeeccCCcchhcccccccEEeecCC-ceEEecccccCcceeeeeeccccccccccceeeecCCc-e
Confidence            333444442  3666777775542       12344455 799999874432  11 112    23445666666555 7


Q ss_pred             EEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347          268 FFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       268 l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      +++|+.+|.|++||. .+..  ..+++...+|..+..+.+|++|+++|..
T Consensus       444 IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  444 IVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             EEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            899999999999998 4433  3477888999999999999999987654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.40  E-value=0.058  Score=49.11  Aligned_cols=199  Identities=12%  Similarity=0.077  Sum_probs=99.1

Q ss_pred             EEeeCCCeEEEEec-CCc--EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347          150 EWRPNGGRSLSVGC-KGG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  226 (444)
Q Consensus       150 ~~s~~~~~ll~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  226 (444)
                      +|.+||++|+.++. +|.  +.+.|+.+. ...                         .|............++|+++.+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i~-------------------------QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATG-EIT-------------------------QLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEE-------------------------E---SS-B-TTT-EE-TTSSEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccC-EEE-------------------------ECccCCCCCccceEEecCCCeE
Confidence            57889888887766 554  445555522 111                         1222111222346677888888


Q ss_pred             EEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEEEe--cCCCeEEEEe---cC-------------------CcEEEEE
Q 013347          227 ASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWS--PTGDYFFAAK---FD-------------------GTFYLWE  281 (444)
Q Consensus       227 ~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~~s--p~~~~l~~~~---~d-------------------~~v~iwd  281 (444)
                      +...... .|.-.|+++.+...+.... ..+-...|.  .|+..++-.-   .|                   ..|.-.|
T Consensus        96 ~Yv~~~~-~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen   96 YYVKNGR-SLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             EEEETTT-EEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             EEEECCC-eEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            7766555 8999999998876665544 333345554  4566553221   11                   2466678


Q ss_pred             CCCCceeccccCCCceeEEEECCCCCEEEEEEcC------CceEEEEEeecCCCCcCCCcCCCCcccccccccCC---ce
Q 013347          282 TNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GI  352 (444)
Q Consensus       282 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v  352 (444)
                      +.+++...+.....++..+.|+|....+++-|-+      +.++|.++.              .+...+.+..+.   .+
T Consensus       175 l~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~--------------dg~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  175 LKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT--------------DGSNVKKVHRRMEGESV  240 (386)
T ss_dssp             TTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET--------------TS---EESS---TTEEE
T ss_pred             CCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc--------------CCCcceeeecCCCCccc
Confidence            8998887777777889999999977665543322      234555553              222222232222   45


Q ss_pred             eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ..=-|.|||..|.--+.-.. ..+..|.-+|+.+++..
T Consensus       241 gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EE
T ss_pred             ccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCce
Confidence            55569999987765433111 11246777788876543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.39  E-value=0.12  Score=48.32  Aligned_cols=236  Identities=12%  Similarity=0.085  Sum_probs=115.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc-----------------------------------------eeEEe
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----------------------------------------ACILT  139 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-----------------------------------------~~~~~  139 (444)
                      .|+.+.|+++..-|+++...|.|.||.+......                                         +..+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4889999999989999999999999987643110                                         00111


Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      +...++|++++.|.- +.++++..+|.+.|.|++.+.-.....-.   .               ..+.......++++.|
T Consensus        83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~---~---------------~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIR---E---------------SFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGG---G-----------------T-SS----EEEEEE
T ss_pred             eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeecccc---c---------------cccccccccCeeEEEE
Confidence            234689999999855 66667777899999999733222110000   0               0011122356777777


Q ss_pred             cc-----CC---CeEEEEeeCCCeEEEEEcCC-C-C-c----eeee-cCCCCeEEEE-EecC-C----------------
Q 013347          220 GP-----DG---RYLASASYESSSFTIWDVAQ-G-L-G----TPIR-RGFGGLSILK-WSPT-G----------------  265 (444)
Q Consensus       220 sp-----~~---~~l~~~~~d~~~i~iwd~~~-~-~-~----~~~~-~~~~~v~~~~-~sp~-~----------------  265 (444)
                      +.     |+   -.+++|...| .+.+|.+.- . . .    .... .+.+.+..+. ++.+ |                
T Consensus       144 ~vm~~~~D~ySSi~L~vGTn~G-~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g  222 (395)
T PF08596_consen  144 SVMTLGGDGYSSICLLVGTNSG-NVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG  222 (395)
T ss_dssp             EEEE-TTSSSEEEEEEEEETTS-EEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred             EEEecCCCcccceEEEEEeCCC-CEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence            62     22   3566777776 999998752 1 1 1    1111 3445555554 3222 1                


Q ss_pred             ---CeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECC----CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          266 ---DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP----EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       266 ---~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp----~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                         +-++....+..++++...+.+.. +..........+.+-+    .+...+++-..++.+..+.+-.           
T Consensus       223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~-----------  291 (395)
T PF08596_consen  223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS-----------  291 (395)
T ss_dssp             ----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----------
T ss_pred             CCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC-----------
Confidence               12333344678999999887762 2222222334445531    2333333445556677666532           


Q ss_pred             CCcccccccccC---C--ceeEEEECCCCCEEEEEec
Q 013347          338 VDLPDIVSLTGS---Q--GIEKIAWDASGERLAVSYK  369 (444)
Q Consensus       338 ~~~~~~~~~~~~---~--~v~~~~~spdg~~l~~~~~  369 (444)
                        .+.+....-.   +  .+....++++|+.++..+.
T Consensus       292 --Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  292 --LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             ----EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred             --chHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence              2222222211   1  4566788999998877654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK10115 protease 2; Provisional

Probab=97.38  E-value=0.2  Score=50.71  Aligned_cols=243  Identities=10%  Similarity=0.029  Sum_probs=119.7

Q ss_pred             ceEEEEEecCCCeEEEEEC-----CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC------CcEEE
Q 013347          101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICI  169 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d------g~v~i  169 (444)
                      .+..+.|||||++||.+..     ...+++.|+.+ +......   ....-..++|++|++.++.+..+      ..|+.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~---i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPEL---LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCcc---ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            5788899999999998642     23578888876 3321111   11112569999998888777653      24566


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE-EEEEccCCCeEEEEeeCC--CeEEEEEcC--CC
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYES--SSFTIWDVA--QG  244 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~--~~i~iwd~~--~~  244 (444)
                      +++.++.....                     +  .+... ..... .+..+.++++++..+..+  +.+.+++..  .+
T Consensus       204 h~lgt~~~~d~---------------------l--v~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~  259 (686)
T PRK10115        204 HTIGTPASQDE---------------------L--VYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA  259 (686)
T ss_pred             EECCCChhHCe---------------------E--EEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC
Confidence            66664321111                     0  11111 11222 333444888766554332  278888853  33


Q ss_pred             CceeeecCCCC-eEEEEEecCCCeEEEEecC---CcEEEEECC-CCceeccccC--CCceeEEEECCCCCEEEEEEcCCc
Q 013347          245 LGTPIRRGFGG-LSILKWSPTGDYFFAAKFD---GTFYLWETN-TWTSEPWSST--SGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       245 ~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d---~~v~iwd~~-~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      ....+...... ...+. +..+.+++....+   ..|...++. .++...+..+  ...+..+.+.  ++.|+.....++
T Consensus       260 ~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g  336 (686)
T PRK10115        260 EPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRG  336 (686)
T ss_pred             CceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCC
Confidence            33333333322 22222 3333333333222   234444554 2333344444  2367777776  445655555444


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccc-c-CCceeEEEEC--CCC-CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G-SQGIEKIAWD--ASG-ERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s--pdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      ....+.+. .           ....+..+. . ...+..+.++  +++ .++++.++-...   +.+..+|+.+++.
T Consensus       337 ~~~l~~~~-~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P---~~~y~~d~~~~~~  398 (686)
T PRK10115        337 LTSLRQIN-R-----------KTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTP---DTLFELDMDTGER  398 (686)
T ss_pred             EEEEEEEc-C-----------CCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCC---CEEEEEECCCCcE
Confidence            44433331 1           111122222 1 1123333444  444 355444443322   7899999887653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.35  E-value=0.048  Score=51.86  Aligned_cols=111  Identities=22%  Similarity=0.376  Sum_probs=68.9

Q ss_pred             eEEEEEccCCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC-----------cEE
Q 013347          214 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-----------TFY  278 (444)
Q Consensus       214 v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----------~v~  278 (444)
                      +....++|+|++++.+-..+|    .++++|+++++...-.-.......+.|.++++.|+....+.           .|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            446789999999987744333    59999999986554221111122399999998886554332           478


Q ss_pred             EEECCCCcee---ccccCC-Cc-eeEEEECCCCCEEEEEEcCCc---eEEEEEe
Q 013347          279 LWETNTWTSE---PWSSTS-GF-VTGATWDPEGRMILLAFAGSL---TLGSIHF  324 (444)
Q Consensus       279 iwd~~~~~~~---~~~~~~-~~-v~~~~~sp~g~~l~~~~~~~~---~~~~~~~  324 (444)
                      .|.+.+....   .+.... .. ...+..+++++++++......   .++.+++
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence            8888776543   222222 22 568889999999886544333   3444444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.35  E-value=0.072  Score=48.65  Aligned_cols=185  Identities=10%  Similarity=0.107  Sum_probs=99.6

Q ss_pred             CCeEEEEee---------C-CCeEEEEEcCCC-----Ccee--eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347          223 GRYLASASY---------E-SSSFTIWDVAQG-----LGTP--IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       223 ~~~l~~~~~---------d-~~~i~iwd~~~~-----~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  285 (444)
                      ..+|+.|..         . | .|.++++...     +...  ....+++|.+++-- +++ |+++. ++.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~G-ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSG-RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-E-EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCc-EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence            466776653         1 5 8999999884     2222  23457889988866 444 54444 588999999888


Q ss_pred             c-eeccccC--CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc---CCceeEEEECC
Q 013347          286 T-SEPWSST--SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG---SQGIEKIAWDA  359 (444)
Q Consensus       286 ~-~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp  359 (444)
                      + ......+  ...+.++..  .+.+++++... ..+..+.+...            ...+..+..   ...++++.|-+
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~-~sv~~~~~~~~------------~~~l~~va~d~~~~~v~~~~~l~  182 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSV--FKNYILVGDAM-KSVSLLRYDEE------------NNKLILVARDYQPRWVTAAEFLV  182 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEE--ETTEEEEEESS-SSEEEEEEETT------------TE-EEEEEEESS-BEEEEEEEE-
T ss_pred             ccchhhheecceEEEEEEec--cccEEEEEEcc-cCEEEEEEEcc------------CCEEEEEEecCCCccEEEEEEec
Confidence            8 5433322  234555544  45577766443 33455544321            111111211   11688888887


Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCC-------CC-eEEEEEeeeeeCCCCCCcce---eeeeC-CCCC--CCceEEEE
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARR-------TP-LISLSLIGFIRGPGDNPKPV---AFSFH-DKFK--QGPLLSVC  425 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~-------~~-~~~~~~~~~~~~~~~~i~~v---~~spd-g~~~--~~~~l~~~  425 (444)
                      |++.++++..+      |.+.++....       ++ .+  .....+. .++.|+++   ++.|. +...  ....+..+
T Consensus       183 d~~~~i~~D~~------gnl~~l~~~~~~~~~~~~~~~L--~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~  253 (321)
T PF03178_consen  183 DEDTIIVGDKD------GNLFVLRYNPEIPNSRDGDPKL--ERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYG  253 (321)
T ss_dssp             SSSEEEEEETT------SEEEEEEE-SS-SSTTTTTTBE--EEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred             CCcEEEEEcCC------CeEEEEEECCCCcccccccccc--eeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEE
Confidence            77788888777      8999998763       11 11  1222222 24456665   44453 1110  12346667


Q ss_pred             eccceee-eee
Q 013347          426 WSSGFCC-TYP  435 (444)
Q Consensus       426 ~~~g~i~-~~~  435 (444)
                      ..+|.|. +.+
T Consensus       254 T~~G~Ig~l~p  264 (321)
T PF03178_consen  254 TVDGSIGVLIP  264 (321)
T ss_dssp             ETTS-EEEEEE
T ss_pred             ecCCEEEEEEe
Confidence            7889888 555

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.31  E-value=0.042  Score=48.07  Aligned_cols=153  Identities=14%  Similarity=0.174  Sum_probs=91.9

Q ss_pred             CceEEEEEccCCCeEEEEe--eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEE-CCCCcee
Q 013347          212 EQITALSWGPDGRYLASAS--YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWTSE  288 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~--~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd-~~~~~~~  288 (444)
                      ..+.+.+++++++.++...  .++..+.++..........  ....+....|++++...+....+...+++. ...++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            3688999999999888777  4444566665443222222  334788899999987777666666666663 3333332


Q ss_pred             --ccc--cCCCceeEEEECCCCCEEEEEE--cCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CCceeEEEECCCC
Q 013347          289 --PWS--STSGFVTGATWDPEGRMILLAF--AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASG  361 (444)
Q Consensus       289 --~~~--~~~~~v~~~~~sp~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg  361 (444)
                        .+.  .....|.++.+||||..+++..  .++..+++-.+-.........    -...+..... ...+.+++|.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~----l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR----LTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce----eccceEecccccCcceeeeecCCC
Confidence              222  2222899999999999988655  223455555443221110000    0111122212 2278999999999


Q ss_pred             CEEEEEecC
Q 013347          362 ERLAVSYKG  370 (444)
Q Consensus       362 ~~l~~~~~d  370 (444)
                      .+++.+...
T Consensus       178 ~L~V~~~~~  186 (253)
T PF10647_consen  178 TLVVLGRSA  186 (253)
T ss_pred             EEEEEeCCC
Confidence            887776655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.1  Score=45.23  Aligned_cols=167  Identities=10%  Similarity=0.141  Sum_probs=105.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~  179 (444)
                      .|.++.|+|+.+.|++......-.|+ +.+.|+....+....-.....+.+..+ +.++++.. ++.+.++.++......
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVE-lt~~GdlirtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVE-LTKEGDLIRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEE-EecCCceEEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcCCccEE
Confidence            48999999999999887777665555 444466666654333344566788877 45555544 6889998887544333


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ce--eeec-C---
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT--PIRR-G---  252 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~--~~~~-~---  252 (444)
                      .....+               ..+.... +.....-.++|.|..+.|..+-..+ -+.||.+.... ..  .... +   
T Consensus       165 ~~~~~~---------------i~L~~~~-k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         165 SAKVQK---------------IPLGTTN-KKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             eccceE---------------EeccccC-CCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcccc
Confidence            322210               0111111 1136788999999988888887765 77777766432 11  1111 1   


Q ss_pred             ----CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCc
Q 013347          253 ----FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       253 ----~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~  286 (444)
                          -..+.++.|++. +.+++.+.+++.+.-.|....-
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence                135678888874 5566777788888888877543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.28  E-value=0.16  Score=47.33  Aligned_cols=151  Identities=17%  Similarity=0.219  Sum_probs=81.3

Q ss_pred             eEEEEEecCCCeEEEEE-----------CCC-eEEEEEccC-CCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCc
Q 013347          102 LQGVSWHQHKHIVAFIS-----------GST-QVIVRDYED-SGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG  166 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~-----------~dg-~v~iw~~~~-~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~  166 (444)
                      ...|+|.++|+++++-.           ..+ .|.+++-.+ .++.  ...+. ..-.....+++.+++  ++++.....
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecCC--EEEeCCCeE
Confidence            67899999999887642           123 666665432 2332  22332 233456889999985  555544443


Q ss_pred             EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeecc---CCCceEEEEEccCCCeEEEEeeC-----------
Q 013347          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPDGRYLASASYE-----------  232 (444)
Q Consensus       167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d-----------  232 (444)
                      .++.+.+......    +             ..-.+...+...   .......++|.|||.+.++-+..           
T Consensus        93 ~~~~d~~gdg~ad----~-------------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~  155 (367)
T TIGR02604        93 LFLRDKDGDDKAD----G-------------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTS  155 (367)
T ss_pred             EEEeCCCCCCCCC----C-------------ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCc
Confidence            3344544221111    0             000111112211   11357889999999876654421           


Q ss_pred             -------CCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe
Q 013347          233 -------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK  272 (444)
Q Consensus       233 -------~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  272 (444)
                             ++.|..++..+++...+.........++|+|+|+++++-.
T Consensus       156 ~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       156 DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                   0145555655554433333334567899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.27  E-value=0.071  Score=50.30  Aligned_cols=51  Identities=18%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc
Q 013347          235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~  286 (444)
                      .|.+|+........+.-..+.+.++.|+.+. .|+....||.+++||+....
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~  112 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF  112 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce
Confidence            4888987765544444344899999999765 45566689999999997544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.27  E-value=0.074  Score=44.30  Aligned_cols=143  Identities=17%  Similarity=0.290  Sum_probs=79.2

Q ss_pred             CCCeEEEEEecCCCeEEEEec-C---------CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          253 FGGLSILKWSPTGDYFFAAKF-D---------GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~-d---------~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      +.+...-..+|+|++++ |.+ |         |.++.|-.. ++.......-.--+.++|+.+.+.+++..+.+-.+..|
T Consensus       108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceee-eeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            35566777899999853 322 1         344444332 22222222333447889998888888765544344333


Q ss_pred             Ee--ecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          323 HF--ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       323 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                      +.  .....+....+.++  +..+.+ .+...-.+++..+|++.+++-..      ++|+..|..+|+++     ..+.-
T Consensus       186 dyd~~tG~~snr~~i~dl--rk~~~~-e~~~PDGm~ID~eG~L~Va~~ng------~~V~~~dp~tGK~L-----~eikl  251 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDL--RKSQPF-ESLEPDGMTIDTEGNLYVATFNG------GTVQKVDPTTGKIL-----LEIKL  251 (310)
T ss_pred             ecCCCcccccCcceeEEe--ccCCCc-CCCCCCcceEccCCcEEEEEecC------cEEEEECCCCCcEE-----EEEEc
Confidence            31  11110000111111  111111 11123445667788888877777      99999999999987     34555


Q ss_pred             CCCCCcceeee
Q 013347          401 PGDNPKPVAFS  411 (444)
Q Consensus       401 ~~~~i~~v~~s  411 (444)
                      ....|++++|-
T Consensus       252 Pt~qitsccFg  262 (310)
T KOG4499|consen  252 PTPQITSCCFG  262 (310)
T ss_pred             CCCceEEEEec
Confidence            57778888884

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.22  E-value=0.13  Score=45.06  Aligned_cols=149  Identities=21%  Similarity=0.326  Sum_probs=90.2

Q ss_pred             CeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347          145 DVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  223 (444)
                      .+.+.+++++++.+++.. .++.-.||-....+....+..                           ...+....|++++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---------------------------g~~l~~PS~d~~g   77 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---------------------------GGSLTRPSWDPDG   77 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---------------------------CCccccccccCCC
Confidence            688999999988777766 233334444332333222222                           2477888999997


Q ss_pred             CeEEEEeeCCCeEEEEE-cCCCCcee--eecC--CCCeEEEEEecCCCeEEEEe---cCCcEEEEECC---CCcee----
Q 013347          224 RYLASASYESSSFTIWD-VAQGLGTP--IRRG--FGGLSILKWSPTGDYFFAAK---FDGTFYLWETN---TWTSE----  288 (444)
Q Consensus       224 ~~l~~~~~d~~~i~iwd-~~~~~~~~--~~~~--~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~---~~~~~----  288 (444)
                      ...+....+. ...++. ...+....  +...  .+.|..+.+||||..++...   .++.|.+--+.   .+...    
T Consensus        78 ~~W~v~~~~~-~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~  156 (253)
T PF10647_consen   78 WVWTVDDGSG-GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG  156 (253)
T ss_pred             CEEEEEcCCC-ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence            7666655454 556663 33343332  2211  12899999999999886554   34666665432   22111    


Q ss_pred             --ccc-cCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          289 --PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       289 --~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                        .+. .....+..++|.+++.+++.+...+.....
T Consensus       157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             ceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence              111 335678999999999988877665554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.21  E-value=0.064  Score=50.00  Aligned_cols=136  Identities=13%  Similarity=0.117  Sum_probs=77.5

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc-eeecccc----cc------cc---cccc-CC---CCceEEEEEe
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA-SVRSGAA----SF------LG---ALSR-GP---GTRWTLVDFL  206 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~-~~~~~~~----~~------~~---~~~~-~~---~~~~~~~~~~  206 (444)
                      .|+.+.|+++...|+++...|.|.||.+...+... .......    ..      ..   .+.. ..   ...+.....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998899999999999999886433221 0000000    00      00   0111 00   1123334444


Q ss_pred             eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee---c------CCCCeEEEEEec-----CC---CeEE
Q 013347          207 RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---R------GFGGLSILKWSP-----TG---DYFF  269 (444)
Q Consensus       207 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~------~~~~v~~~~~sp-----~~---~~l~  269 (444)
                      ... .++|++++.| |=-+++.|..+| .+.|.|++....+...   .      ....++++.|.-     |+   -.++
T Consensus        83 ~~~-~g~vtal~~S-~iGFvaigy~~G-~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAK-QGPVTALKNS-DIGFVAIGYESG-SLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ----S-SEEEEEE--BTSEEEEEETTS-EEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ecc-CCcEeEEecC-CCcEEEEEecCC-cEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            445 4899999997 555788888887 9999999877554321   1      124678888873     22   3567


Q ss_pred             EEecCCcEEEEECC
Q 013347          270 AAKFDGTFYLWETN  283 (444)
Q Consensus       270 ~~~~d~~v~iwd~~  283 (444)
                      +|...|.+.+|.+-
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            88888999888763

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.19  E-value=0.045  Score=40.09  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=48.6

Q ss_pred             eEEEEEec---CC-CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       102 v~~~~~sp---~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      |+++++..   || +.|++|+.|..|+||+-+.   ....+  ...+.|+++.-... ++++++-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei--~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEI--TETDKVTSLCSLGG-GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEE--ecccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence            56666654   33 5788999999999998653   22222  34567888887777 788888889999998764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.14  Score=44.44  Aligned_cols=158  Identities=14%  Similarity=0.183  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      +-...+.++.|+|+.+.|+++.....-.++--..++....+.                       +.+-  ...-.+.|.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-----------------------L~g~--~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-----------------------LTGF--SDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-----------------------cccc--CChhHeEEe
Confidence            445569999999998888888776555554433222222221                       2222  345667777


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCce--------eee--cC-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-e
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGT--------PIR--RG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E  288 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~--------~~~--~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~  288 (444)
                      -++++.++--.+. .+.++.+......        ++.  .+ +.....++|+|..+.|+.+-+-+-+.||....... .
T Consensus       138 g~n~fvi~dER~~-~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDR-ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcc-eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccc
Confidence            7777776666665 8888777655221        111  12 45678899999999898888888777777654331 1


Q ss_pred             c---cccC-------CCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          289 P---WSST-------SGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       289 ~---~~~~-------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .   ...+       -..+.++.|++....+++-+.++..+-.++.
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence            1   1111       2346788899877666666677666666554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.13  E-value=0.2  Score=45.70  Aligned_cols=108  Identities=14%  Similarity=0.043  Sum_probs=67.6

Q ss_pred             CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeecC--CCCeEEEEEecCCCeEEEEecCCcEEEEECC--CC
Q 013347          211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETN--TW  285 (444)
Q Consensus       211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~--~~  285 (444)
                      .+.|++++-- +++ |+++. .+ .|.+|++...+ .......  ...+.++...  +++++.|.....+.++..+  ..
T Consensus        88 ~g~V~ai~~~-~~~-lv~~~-g~-~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   88 KGPVTAICSF-NGR-LVVAV-GN-KLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             SS-EEEEEEE-TTE-EEEEE-TT-EEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE
T ss_pred             cCcceEhhhh-CCE-EEEee-cC-EEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC
Confidence            3688888765 444 54444 34 89999999887 4443333  3355555554  6689999888888877443  33


Q ss_pred             ceeccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          286 TSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       286 ~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      +...+.  .....++++.|-++++.++ +++..+.+..++..
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEEC
Confidence            332222  3456688899987776544 56777888888874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.10  E-value=0.21  Score=46.08  Aligned_cols=234  Identities=11%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             CCCeEEEEE-CCCeEEEEEccCCCCceeEEec-C----CC----CCeEEEEEeeCCCeEEEEecC------CcEEEEecC
Q 013347          110 HKHIVAFIS-GSTQVIVRDYEDSGKDACILTS-D----SQ----RDVKVLEWRPNGGRSLSVGCK------GGICIWAPS  173 (444)
Q Consensus       110 ~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~-~----~~----~~v~~l~~s~~~~~ll~~~~d------g~v~iw~~~  173 (444)
                      +.++|+..+ .++.|+|.|+.++.....+... .    +.    .....+.--|+|+.++++-.|      |.+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 7889999999965333332210 0    00    112223334776677776443      556666655


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeec--cCCCceEEEEEccCCCeEEEEee-------------------C
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASY-------------------E  232 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-------------------d  232 (444)
                      +-                         ++......  .....-..+-|.|..+.++++..                   -
T Consensus       166 tf-------------------------~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y  220 (461)
T PF05694_consen  166 TF-------------------------EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY  220 (461)
T ss_dssp             T---------------------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred             cc-------------------------cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence            21                         11111111  11133456666776666666532                   2


Q ss_pred             CCeEEEEEcCCCCceeeecCC---CCeEEEEEec--CCCeEEE-EecCCcEEEEEC-CCCce-----ecccc--------
Q 013347          233 SSSFTIWDVAQGLGTPIRRGF---GGLSILKWSP--TGDYFFA-AKFDGTFYLWET-NTWTS-----EPWSS--------  292 (444)
Q Consensus       233 ~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp--~~~~l~~-~~~d~~v~iwd~-~~~~~-----~~~~~--------  292 (444)
                      |.++.+||+.+.+.++.....   .....+.|..  +..+=++ +.-..+|..|-- ..++.     ..+..        
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            358999999998877755543   2345666654  4444333 333445555533 33332     11110        


Q ss_pred             ---------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC-CCcCCCcCCCC---cccccccccCC---ceeEEE
Q 013347          293 ---------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-PSLDAHLLPVD---LPDIVSLTGSQ---GIEKIA  356 (444)
Q Consensus       293 ---------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~---~v~~~~  356 (444)
                               -..-++.+..|.|.++|++++...+.++.+++.+.. +.+-++++.-.   .......++..   ...-+.
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                     134579999999999999999999999999987642 11111111000   00000111111   346678


Q ss_pred             ECCCCCEEEEEe
Q 013347          357 WDASGERLAVSY  368 (444)
Q Consensus       357 ~spdg~~l~~~~  368 (444)
                      .|-||+.|.+.+
T Consensus       381 lS~DGkRlYvTn  392 (461)
T PF05694_consen  381 LSLDGKRLYVTN  392 (461)
T ss_dssp             E-TTSSEEEEE-
T ss_pred             EccCCeEEEEEe
Confidence            899999988775

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.07  E-value=0.2  Score=44.69  Aligned_cols=275  Identities=16%  Similarity=0.192  Sum_probs=119.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCC----CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~----~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      .+.+|+|..+..-+|+| ..+.  |+...+.++.-......-.    -...++.|..  ...++++..+.| +-..+ .+
T Consensus        18 ~l~dV~F~d~~~G~~VG-~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~g~l-l~T~D-gG   90 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVG-AYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGEPGLL-LHTTD-GG   90 (302)
T ss_dssp             -EEEEEESSSS-EEEEE-TTTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEETTEE-EEESS-TT
T ss_pred             ceEEEEEecCCEEEEEe-cCCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEcCCceE-EEecC-CC
Confidence            57899999666666665 4554  5556654443332221111    2356677754  345556655532 22222 22


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-Cc-ee-eecCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LG-TP-IRRGF  253 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~-~~-~~~~~  253 (444)
                                           ..|..+..-..- ......+....++..++ ++..| .  ||....+ +. .. .....
T Consensus        91 ---------------------~tW~~v~l~~~l-pgs~~~i~~l~~~~~~l-~~~~G-~--iy~T~DgG~tW~~~~~~~~  144 (302)
T PF14870_consen   91 ---------------------KTWERVPLSSKL-PGSPFGITALGDGSAEL-AGDRG-A--IYRTTDGGKTWQAVVSETS  144 (302)
T ss_dssp             ---------------------SS-EE----TT--SS-EEEEEEEETTEEEE-EETT-----EEEESSTTSSEEEEE-S--
T ss_pred             ---------------------CCcEEeecCCCC-CCCeeEEEEcCCCcEEE-EcCCC-c--EEEeCCCCCCeeEcccCCc
Confidence                                 233332211111 12333344334443333 33333 3  3433333 22 12 23345


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      +.+..+.-++||++++++.....+.-||.-....... ......|.++.|.|++.+.+++  ..+.+..-+....     
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~~-----  217 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPDD-----  217 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TTE-----
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcEEEEccCCCC-----
Confidence            7788888999999888887655556777654333222 2346789999999999887755  2233333321000     


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      ...|  . +.+..+.... .+.+++|.+++...++|+.+        ..+.....|+--  +.......-....+.+.|.
T Consensus       218 ~~~w--~-~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G--------~l~~S~DgGktW--~~~~~~~~~~~n~~~i~f~  284 (302)
T PF14870_consen  218 GETW--S-EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG--------TLLVSTDGGKTW--QKDRVGENVPSNLYRIVFV  284 (302)
T ss_dssp             EEEE------B-TTSS--S-EEEEEESSSS-EEEEESTT---------EEEESSTTSS---EE-GGGTTSSS---EEEEE
T ss_pred             cccc--c-cccCCcccCceeeEEEEecCCCCEEEEeCCc--------cEEEeCCCCccc--eECccccCCCCceEEEEEc
Confidence            0000  0 0111121222 68999999999888877653        334445555432  1111122234557788887


Q ss_pred             eCCCCCCCceEEEEeccceeeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ++.+-     .++| ++|.|.-|
T Consensus       285 ~~~~g-----f~lG-~~G~ll~~  301 (302)
T PF14870_consen  285 NPDKG-----FVLG-QDGVLLRY  301 (302)
T ss_dssp             ETTEE-----EEE--STTEEEEE
T ss_pred             CCCce-----EEEC-CCcEEEEe
Confidence            65332     3444 56666544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0036  Score=59.05  Aligned_cols=94  Identities=14%  Similarity=0.209  Sum_probs=65.2

Q ss_pred             CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee-EEEECCCCCEEEEEecCC
Q 013347          294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE-KIAWDASGERLAVSYKGG  371 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~spdg~~l~~~~~d~  371 (444)
                      ...+.-+.|+|.-.++|.+... +.+-..++              ..+.+.++.-++ .++ +++|.|||+.||+|-.| 
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~-gelli~R~--------------n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd-   83 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEK-GELLIHRL--------------NWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD-   83 (665)
T ss_pred             ccceEEEEEcCccchhheeccC-CcEEEEEe--------------ccceeEeccCCCCccceeeeecCCCCEEEEEecC-
Confidence            4467889999999998876443 43444443              233444555444 555 99999999999999999 


Q ss_pred             CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                           |+|++-|..++..+...    .......|.++-|++
T Consensus        84 -----G~I~L~Dve~~~~l~~~----~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   84 -----GTIRLHDVEKGGRLVSF----LFSVETDISKGIWDR  115 (665)
T ss_pred             -----CeEEEEEccCCCceecc----ccccccchheeeccc
Confidence                 99999999998776332    122345566777753

>smart00320 WD40 WD40 repeats

Probab=97.02  E-value=0.0027  Score=36.27  Aligned_cols=37  Identities=38%  Similarity=0.835  Sum_probs=31.0

Q ss_pred             EEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347          202 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  240 (444)
Q Consensus       202 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd  240 (444)
                      ....+..|. ..|.++.|+++++.+++++.|+ .+++|+
T Consensus         4 ~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~d~-~~~~~~   40 (40)
T smart00320        4 LLKTLKGHT-GPVTSVAFSPDGKYLASASDDG-TIKLWD   40 (40)
T ss_pred             EEEEEEecC-CceeEEEECCCCCEEEEecCCC-eEEEcC
Confidence            344566664 7899999999999999999998 999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.98  E-value=0.3  Score=45.12  Aligned_cols=168  Identities=15%  Similarity=0.084  Sum_probs=80.1

Q ss_pred             EEEEccCCCeEEEEee--CC---CeEEEEEcCCCCceeeecC----CCCeEEEEEecCCCeEEEEec-------------
Q 013347          216 ALSWGPDGRYLASASY--ES---SSFTIWDVAQGLGTPIRRG----FGGLSILKWSPTGDYFFAAKF-------------  273 (444)
Q Consensus       216 ~~~~sp~~~~l~~~~~--d~---~~i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~-------------  273 (444)
                      .+..-|+|+.++++-.  +|   +-+.++|-++.+.......    ...-..+-|.|..+.+++...             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            3444578888877622  11   2677888776554432222    233467888898888887642             


Q ss_pred             -------CCcEEEEECCCCceeccccC--C-CceeEEEE--CCCCCEEEEEEcCCceEEEEEeecC-CCCcCCCc----C
Q 013347          274 -------DGTFYLWETNTWTSEPWSST--S-GFVTGATW--DPEGRMILLAFAGSLTLGSIHFASK-PPSLDAHL----L  336 (444)
Q Consensus       274 -------d~~v~iwd~~~~~~~~~~~~--~-~~v~~~~~--sp~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~----~  336 (444)
                             ..++.+||+.+.+..+....  . .....+.|  .|+..+=++++.-...++.|.-... .+..+.-+    .
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                   25799999999988543322  2 23556666  4666676667666666666654211 11000000    0


Q ss_pred             CCC---c-ccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          337 PVD---L-PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       337 ~~~---~-~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      .++   . ..++.+..-. -|++|..|.|.++|.++..-.     |.|+.||+..-.
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-----GdvrqYDISDP~  345 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-----GDVRQYDISDPF  345 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-----TEEEEEE-SSTT
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-----CcEEEEecCCCC
Confidence            000   0 0011111112 478999999999999988763     999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>smart00320 WD40 WD40 repeats

Probab=96.90  E-value=0.0019  Score=36.95  Aligned_cols=33  Identities=27%  Similarity=0.562  Sum_probs=27.9

Q ss_pred             ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          345 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       345 ~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      .+..|. .|.++.|+++++++++++.|      +.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d------~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGKYLASASDD------GTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCCEEEEecCC------CeEEEcC
Confidence            344455 79999999999999999988      9999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.86  E-value=0.26  Score=42.54  Aligned_cols=197  Identities=15%  Similarity=0.144  Sum_probs=108.9

Q ss_pred             eEEEEEecCCC-eEEEEECCCe-EEEEEccCCCCceeEEecCCCCCe-EEEEEeeCCCeEEEEecC-----CcEEEEecC
Q 013347          102 LQGVSWHQHKH-IVAFISGSTQ-VIVRDYEDSGKDACILTSDSQRDV-KVLEWRPNGGRSLSVGCK-----GGICIWAPS  173 (444)
Q Consensus       102 v~~~~~sp~g~-~la~~~~dg~-v~iw~~~~~~~~~~~~~~~~~~~v-~~l~~s~~~~~ll~~~~d-----g~v~iw~~~  173 (444)
                      ...++|+|... -++.+-.=|+ ..++|.+. .+...++......-. -.=.|||||..|+++-.|     |.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            44678888654 4555655554 56788876 333333322111111 123589997777776554     889999987


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------CCC-----------eE
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESS-----------SF  236 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~-----------~i  236 (444)
                      ..                        +..+..+..|. -....+.|.+||+.++.+..      |-+           .+
T Consensus       149 ~~------------------------fqrvgE~~t~G-iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl  203 (366)
T COG3490         149 EG------------------------FQRVGEFSTHG-IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL  203 (366)
T ss_pred             cc------------------------cceecccccCC-cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence            11                        11233455553 56788999999999987642      100           23


Q ss_pred             EEEEcCCCCceee---e--cCCCCeEEEEEecCCCeEEEEecCCc-----EEEEECCCCceec--------cccCCCcee
Q 013347          237 TIWDVAQGLGTPI---R--RGFGGLSILKWSPTGDYFFAAKFDGT-----FYLWETNTWTSEP--------WSSTSGFVT  298 (444)
Q Consensus       237 ~iwd~~~~~~~~~---~--~~~~~v~~~~~sp~~~~l~~~~~d~~-----v~iwd~~~~~~~~--------~~~~~~~v~  298 (444)
                      .+.|..+++.+..   .  .+.-.+..++..+||..++.+-..|.     -.+=-...++...        .......|-
T Consensus       204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig  283 (366)
T COG3490         204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG  283 (366)
T ss_pred             EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence            3444444443321   1  23456888888888886665543321     0000111122211        112344577


Q ss_pred             EEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          299 GATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      +++.+.+..+++.++-......+|+.
T Consensus       284 siA~n~~~glV~lTSP~GN~~vi~da  309 (366)
T COG3490         284 SIAANRRDGLVALTSPRGNRAVIWDA  309 (366)
T ss_pred             heeecccCCeEEEecCCCCeEEEEEc
Confidence            88888777777766555555555654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.86  E-value=0.36  Score=44.20  Aligned_cols=50  Identities=16%  Similarity=0.314  Sum_probs=33.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCc-eeE--E---ecCCCCCeEEEEEeeC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACI--L---TSDSQRDVKVLEWRPN  154 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-~~~--~---~~~~~~~v~~l~~s~~  154 (444)
                      -++|+|.|||+++++ ...|.|.+++..  +.. ...  .   ..........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~--g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKD--GSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETT--TEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCC--CcCcceecccccccccccCCcccceeccc
Confidence            578999999988775 569999999833  222 111  1   1234567899999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.82  E-value=0.23  Score=48.99  Aligned_cols=244  Identities=14%  Similarity=0.128  Sum_probs=119.2

Q ss_pred             ecCCCeEEEEECC------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC------CcEEEEecCCC
Q 013347          108 HQHKHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSYP  175 (444)
Q Consensus       108 sp~g~~la~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d------g~v~iw~~~~~  175 (444)
                      +..+.+++.|+.+      ..+..+|..+. .............-.+++...+ ..++++|.+      .++..||... 
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~~~r~~~~~~~~~~-~lYv~GG~~~~~~~l~~ve~YD~~~-  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMPSPRCRVGVAVLNG-KLYVVGGYDSGSDRLSSVERYDPRT-  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCCcccccccEEEECC-EEEEEccccCCCcccceEEEecCCC-
Confidence            3345667777755      35777887763 1211111123333445555554 555666666      2455666552 


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----eEEEEEcCCCCceeeec
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~  251 (444)
                                            ++|.....+.... .......  -+|...++|+.||.    ++-.||..+.+......
T Consensus       359 ----------------------~~W~~~a~M~~~R-~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~  413 (571)
T KOG4441|consen  359 ----------------------NQWTPVAPMNTKR-SDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP  413 (571)
T ss_pred             ----------------------CceeccCCccCcc-ccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC
Confidence                                  2343333332221 1111222  37888888988862    57788888876555443


Q ss_pred             CCCCeEEEEE-ecCCCeEEEEecCC------cEEEEECCCCceeccccCCCc--eeEEEECCCCCEEEEEEcCC-ceEEE
Q 013347          252 GFGGLSILKW-SPTGDYFFAAKFDG------TFYLWETNTWTSEPWSSTSGF--VTGATWDPEGRMILLAFAGS-LTLGS  321 (444)
Q Consensus       252 ~~~~v~~~~~-sp~~~~l~~~~~d~------~v~iwd~~~~~~~~~~~~~~~--v~~~~~sp~g~~l~~~~~~~-~~~~~  321 (444)
                      ........+. .-+|+..++|+.++      ++..||..+++......-...  -..++. -++...++|+.++ .....
T Consensus       414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~  492 (571)
T KOG4441|consen  414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSS  492 (571)
T ss_pred             CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccce
Confidence            3222222222 22677778887554      678999998877543322111  112222 2344444443222 22333


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +..++....        .+..+...+....-..++ .-+++..++|+.++.... ++|..||..+++-.
T Consensus       493 VE~ydp~~~--------~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l-~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  493 VERYDPETN--------QWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNL-NTVECYDPETDTWT  551 (571)
T ss_pred             EEEEcCCCC--------ceeEcccCccccccccEE-EECCEEEEEecccCcccc-ceeEEcCCCCCcee
Confidence            333332100        111121111111111111 126677777776654333 78889988876543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.79  E-value=0.25  Score=49.91  Aligned_cols=142  Identities=12%  Similarity=0.114  Sum_probs=84.9

Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC-------CCeEEEEecCCcEEEEECCCCc--eec---
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT-------GDYFFAAKFDGTFYLWETNTWT--SEP---  289 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~d~~v~iwd~~~~~--~~~---  289 (444)
                      +.+.|+....+...|+-.|++.|+.+........+.-..+.|+       ....+.|-.++.+..||.+-..  +..   
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            3344444333333899999999988764443332223334443       2344567778889999998643  211   


Q ss_pred             -cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEE
Q 013347          290 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVS  367 (444)
Q Consensus       290 -~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~  367 (444)
                       ........+|++-+.+|..++ |+. +|   .+++++..          .......+.+-. +|..|..+.||+||++.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G~iav-gs~-~G---~IRLyd~~----------g~~AKT~lp~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDGYIAV-GSN-KG---DIRLYDRL----------GKRAKTALPGLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             cccccCCCceEEEecCCceEEE-EeC-CC---cEEeeccc----------chhhhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence             113345578888888886544 532 23   34443321          112223444544 99999999999998877


Q ss_pred             ecCCCccccceEEEEEcC
Q 013347          368 YKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       368 ~~d~~~~~d~~i~vwd~~  385 (444)
                      +.       ..|.|++..
T Consensus       637 c~-------tyLlLi~t~  647 (794)
T PF08553_consen  637 CK-------TYLLLIDTL  647 (794)
T ss_pred             ec-------ceEEEEEEe
Confidence            65       578888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.66  E-value=0.21  Score=44.46  Aligned_cols=146  Identities=11%  Similarity=0.122  Sum_probs=85.7

Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-----------
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----------  289 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-----------  289 (444)
                      ..++.|+.|..+|  +.++++..............|..+...|+-+.|++-+ |+.++++++..-....           
T Consensus         5 ~~~~~L~vGt~~G--l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG--LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC--EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899998776  8999984333333333334599999999888776665 5999999987544322           


Q ss_pred             ----cccCCCceeEEE---ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc-ccccccccCCceeEEEECCCC
Q 013347          290 ----WSSTSGFVTGAT---WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQGIEKIAWDASG  361 (444)
Q Consensus       290 ----~~~~~~~v~~~~---~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~spdg  361 (444)
                          .......+...+   -......++++...  ++..+.......         .. ...+.+.-...+.+++|.  +
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~---------~f~~~~ke~~lp~~~~~i~~~--~  148 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRN---------SFSKLLKEISLPDPPSSIAFL--G  148 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECC--EEEEEEEECCcc---------cccceeEEEEcCCCcEEEEEe--C
Confidence                111222344333   22334456655544  444444322100         11 334444444578889988  5


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +.|+.+..       +...+.|+.++..
T Consensus       149 ~~i~v~~~-------~~f~~idl~~~~~  169 (275)
T PF00780_consen  149 NKICVGTS-------KGFYLIDLNTGSP  169 (275)
T ss_pred             CEEEEEeC-------CceEEEecCCCCc
Confidence            66777765       3577777775544

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.59  E-value=0.44  Score=45.49  Aligned_cols=158  Identities=16%  Similarity=0.245  Sum_probs=94.3

Q ss_pred             cceEEEEEecCCCeEEEEE---CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC----CCeEEEEecCCcEEEEec
Q 013347          100 VDLQGVSWHQHKHIVAFIS---GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~----~~~ll~~~~dg~v~iw~~  172 (444)
                      ++|..++|. ||+.++...   .+|.++.      |....+   +.-+.|..+.|.|-    ...|+++.....|.+|.+
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf------Gds~vi---GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL   89 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF------GDSKVI---GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL   89 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCcccc------CCccEe---eccceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence            468888986 555554332   2333222      222222   33455899999885    346999999999999998


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEE--eeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDF--LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--  248 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--  248 (444)
                      ......                  ..+|.+-++  ++..-.--...+.|+|....|+.-.... .-.+++++......  
T Consensus        90 ~~s~~e------------------~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVka  150 (671)
T PF15390_consen   90 CPSTTE------------------RNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKA  150 (671)
T ss_pred             ccCccc------------------cccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEE
Confidence            722111                  112222211  2111111224678999998888777665 55666766543332  


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCc
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT  286 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~  286 (444)
                      -....+.|.|.+|.+||+.|+.+- ..=.-++||-....
T Consensus       151 Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt  189 (671)
T PF15390_consen  151 DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT  189 (671)
T ss_pred             eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence            235568899999999999886543 33356788865443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.48  E-value=0.0092  Score=36.34  Aligned_cols=29  Identities=17%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~  129 (444)
                      .|.+++|+|...+||.++.+|.|.|+.++
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            48999999999999999999999999985

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.16  E-value=0.14  Score=50.15  Aligned_cols=118  Identities=18%  Similarity=0.314  Sum_probs=73.4

Q ss_pred             EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe--eCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s--~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      +.-|.-++..++-+....+.|||... +...........+.|.++.|.  |+++.++++|..+.|.+|.-........  
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~--  111 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK--  111 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCC-cEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC--
Confidence            33444444444444556899999987 333222222457899999994  7888999999999999986531111000  


Q ss_pred             ccccccccccccCCCCceEEEE--EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347          183 SGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~  242 (444)
                                    ...|..++  .+..+...+|.+..|.++|..++.++   +.+.|+|-.
T Consensus       112 --------------~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk~  156 (631)
T PF12234_consen  112 --------------GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDKW  156 (631)
T ss_pred             --------------CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECCC
Confidence                          01222222  23444445799999999998666543   278888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.12  E-value=0.029  Score=34.18  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=28.5

Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      ...|..++|+|...+||.++.+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4679999999999999999999999999983

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.08  E-value=0.024  Score=46.93  Aligned_cols=107  Identities=12%  Similarity=0.067  Sum_probs=59.2

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE-EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE-WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~-~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      +..+++|+.+|.|.+|+++..+....... .-...|-++- --.++....+++.+|.|+.|++...+.            
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~------------  136 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV------------  136 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhh-cccccceeccccccccceeEEeccCCceeeeccccCce------------
Confidence            45688899999999999885333322221 1222333322 222323456666789999999983222            


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE--eeCCCeEEEEEcCCC
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA--SYESSSFTIWDVAQG  244 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~~i~iwd~~~~  244 (444)
                                   +.....|....+.....+..++.++++  |.+. .++.|++...
T Consensus       137 -------------~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~-~~k~W~ve~~  179 (238)
T KOG2444|consen  137 -------------LGYVGQHNFESGEELIVVGSDEFLKIADTSHDR-VLKKWNVEKI  179 (238)
T ss_pred             -------------eeeeccccCCCcceeEEecCCceEEeeccccch-hhhhcchhhh
Confidence                         111222221344455555555666666  5665 6677776543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.035  Score=56.10  Aligned_cols=102  Identities=15%  Similarity=0.175  Sum_probs=69.7

Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCcee
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVT  298 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~  298 (444)
                      .+-.++.++..| .+...|+...-..  .-....++|.+++|+.+|+.++.|-.+|.|.+||+..++.. .+..+..+.+
T Consensus        98 ~~~~ivi~Ts~g-hvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHG-HVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCch-hhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            445677777666 8988888765332  22234689999999999999999999999999999998773 3444444433


Q ss_pred             E---EEECCCCCEEEEEEcCCceEEEEEee
Q 013347          299 G---ATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       299 ~---~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      +   +.+..++..++ +++..|..|...+.
T Consensus       177 ~vi~v~~t~~nS~ll-t~D~~Gsf~~lv~n  205 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLL-TSDTGGSFWKLVFN  205 (1206)
T ss_pred             eEEEEEEeCCCcEEE-EccCCCceEEEEec
Confidence            3   33444555444 44555666666554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.97  E-value=1.7  Score=42.24  Aligned_cols=169  Identities=13%  Similarity=0.111  Sum_probs=82.7

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCC----CeE-EEEEeeCCCeEEEEe---------cCCcEEEEecCCCCC
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQR----DVK-VLEWRPNGGRSLSVG---------CKGGICIWAPSYPGN  177 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----~v~-~l~~s~~~~~ll~~~---------~dg~v~iw~~~~~~~  177 (444)
                      ..++.++.++.|.-+|.++ ++...........    .+. +..+. + +.+++++         .++.+..+|..+++.
T Consensus       111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAET-GKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCC-CCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            5677778899999999887 5544443211110    011 11222 2 3444443         246777778775554


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCce-EEEEEccCCCeEEEEeeCC-----------------CeEEEE
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYES-----------------SSFTIW  239 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d~-----------------~~i~iw  239 (444)
                      .-......... ..+.     .|........+....+ ...++.+.+..++.++.++                 +.|.-+
T Consensus       188 ~W~~~~~~~~~-~~~~-----~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al  261 (488)
T cd00216         188 LWRFYTTEPDP-NAFP-----TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL  261 (488)
T ss_pred             eeEeeccCCCc-CCCC-----CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence            43332210000 0000     0000000000000111 1345555566666665442                 168888


Q ss_pred             EcCCCCceeeecCC-CCe------EEEEEe----cCCC---eEEEEecCCcEEEEECCCCceec
Q 013347          240 DVAQGLGTPIRRGF-GGL------SILKWS----PTGD---YFFAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       240 d~~~~~~~~~~~~~-~~v------~~~~~s----p~~~---~l~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      |.++++........ ...      ....+.    -++.   .++.++.+|.+..+|.++++...
T Consensus       262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             cCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence            99888776543321 111      001111    1333   56778889999999999998743

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.041  Score=55.61  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      +..++-.-.+..++.|+..|.+...|+..+ -.....-..-.++|++++|+.+|..++++-.+|.|.+||+...+..
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            334444445678999999999999888753 1111211234679999999999888888888999999999854443

>PRK10115 protease 2; Provisional

Probab=95.80  E-value=2.6  Score=42.90  Aligned_cols=111  Identities=8%  Similarity=0.012  Sum_probs=64.6

Q ss_pred             CeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          145 DVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+..+.|+||++.++.+...     -.|++.|+.++......                        +.+   .. ..++|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------------------i~~---~~-~~~~w  179 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------------------LDN---VE-PSFVW  179 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------------------ccC---cc-eEEEE
Confidence            46678899997766655432     35777777633211111                        111   11 45899


Q ss_pred             ccCCCeEEEEeeCC-----CeEEEEEcCCC--CceeeecC-CCCeE-EEEEecCCCeEEEEec---CCcEEEEECC
Q 013347          220 GPDGRYLASASYES-----SSFTIWDVAQG--LGTPIRRG-FGGLS-ILKWSPTGDYFFAAKF---DGTFYLWETN  283 (444)
Q Consensus       220 sp~~~~l~~~~~d~-----~~i~iwd~~~~--~~~~~~~~-~~~v~-~~~~sp~~~~l~~~~~---d~~v~iwd~~  283 (444)
                      ++|++.|+....+.     ..|..+++.++  +...+... ..... .+..+.++++++..+.   ++.+.+|+..
T Consensus       180 ~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        180 ANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             eeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            99999887775532     26888888887  33334432 23333 2333448887754433   4578888853

>PHA02713 hypothetical protein; Provisional

Probab=95.78  E-value=0.97  Score=44.71  Aligned_cols=155  Identities=6%  Similarity=-0.054  Sum_probs=74.3

Q ss_pred             cCCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCCeE--EEEEecCCCeEEEEecC--------------------
Q 013347          221 PDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLS--ILKWSPTGDYFFAAKFD--------------------  274 (444)
Q Consensus       221 p~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~v~--~~~~sp~~~~l~~~~~d--------------------  274 (444)
                      -+|+..+.|+.++.    .+..||..+++-..+.....+..  +++ .-+++..+.|+.+                    
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccc
Confidence            36777788876541    58889988775443332221111  111 2267777777754                    


Q ss_pred             ---CcEEEEECCCCceeccccCCC-ceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347          275 ---GTFYLWETNTWTSEPWSSTSG-FVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  348 (444)
Q Consensus       275 ---~~v~iwd~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (444)
                         ..+..||..+.+......... ........-+++..++|+..+.  ....+..++...  + .    .+..+..+..
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~--~-~----~W~~~~~m~~  501 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT--Y-N----GWELITTTES  501 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC--C-C----CeeEccccCc
Confidence               247789988876643332111 1111111224554444443211  111223332210  0 0    1222222222


Q ss_pred             CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          349 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       349 ~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      .. ....++  -+|++.++|+.++.    .++..||..+++-
T Consensus       502 ~r~~~~~~~--~~~~iyv~Gg~~~~----~~~e~yd~~~~~W  537 (557)
T PHA02713        502 RLSALHTIL--HDNTIMMLHCYESY----MLQDTFNVYTYEW  537 (557)
T ss_pred             ccccceeEE--ECCEEEEEeeecce----eehhhcCcccccc
Confidence            22 122222  27788888887731    3788888887654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.75  E-value=0.029  Score=46.49  Aligned_cols=138  Identities=12%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCC
Q 013347          117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (444)
Q Consensus       117 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (444)
                      .+.+|.|+=+++.. -+..+.....|...-.-+.+   +..+++++.+|.|.+|+....+........            
T Consensus        36 ~sa~~~v~~~~~~k-~k~s~rse~~~~e~~~v~~~---~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------------   99 (238)
T KOG2444|consen   36 TSADGLVRERKVRK-HKESCRSERFIDEGQRVVTA---SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------------   99 (238)
T ss_pred             ccCCcccccchhhh-hhhhhhhhhhhhcceeeccc---CceEEeecccceEEEecCCccchHHHhhhc------------
Confidence            35677777666653 11111111122222112222   256888889999999998733322211111            


Q ss_pred             CCceEEEEEeeccCCCceEE-EEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-C-CCeEEEEEecCCCeEEEE--
Q 013347          197 GTRWTLVDFLRSQNGEQITA-LSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-F-GGLSILKWSPTGDYFFAA--  271 (444)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~-~~v~~~~~sp~~~~l~~~--  271 (444)
                                  . ...|.+ +.--.++.+.++++.++ .|+.|++.-.+..-...+ . .++.....+..++.++.+  
T Consensus       100 ------------~-~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~  165 (238)
T KOG2444|consen  100 ------------G-EESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADT  165 (238)
T ss_pred             ------------c-cccceeccccccccceeEEeccCC-ceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecc
Confidence                        0 122322 22234566788888998 999999988776654443 3 344444444455555555  


Q ss_pred             ecCCcEEEEECCC
Q 013347          272 KFDGTFYLWETNT  284 (444)
Q Consensus       272 ~~d~~v~iwd~~~  284 (444)
                      +.|..++.|++..
T Consensus       166 S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  166 SHDRVLKKWNVEK  178 (238)
T ss_pred             ccchhhhhcchhh
Confidence            5666666666654

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.45  Score=44.72  Aligned_cols=149  Identities=11%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             cCCCeEEE-EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-------eEEEEecCCcEEEEecCCCCCcce
Q 013347          109 QHKHIVAF-ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-------RSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       109 p~g~~la~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-------~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+.++|.. +.....++-.|++. |+...... -+.. |.-+.+.|+..       .-+.+-++..|.-||.+..+....
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~-GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIER-GKIVEEWK-FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             cccceEeeCCCCcCcceeeeccc-ceeeeEee-ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            34444443 33444566667766 55444432 3333 77777777642       345566678899999874332110


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~  259 (444)
                      .                  |..-+.+..  .....|.+-.-+| ++++|+.+| .|++||--..... .+.+...+|..+
T Consensus       420 ~------------------~~q~kqy~~--k~nFsc~aTT~sG-~IvvgS~~G-dIRLYdri~~~AKTAlPgLG~~I~hV  477 (644)
T KOG2395|consen  420 A------------------VVQSKQYST--KNNFSCFATTESG-YIVVGSLKG-DIRLYDRIGRRAKTALPGLGDAIKHV  477 (644)
T ss_pred             e------------------eeecccccc--ccccceeeecCCc-eEEEeecCC-cEEeehhhhhhhhhcccccCCceeeE
Confidence            0                  111111221  2355666665555 788999998 9999997332222 355667899999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      ..+.+|++|+..+ +..+.+.++.
T Consensus       478 dvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  478 DVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             EeeccCcEEEEec-ccEEEEEEEe
Confidence            9999999987665 5677777764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=1.9  Score=39.97  Aligned_cols=159  Identities=7%  Similarity=0.060  Sum_probs=92.6

Q ss_pred             EEEecCCCeEEEEECCCeEEEEEccCCCC-ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      +-|.-..+.| .+...|.+.=|.+...+. .+..+.....++|.++.||+|.+-+++--.+.+|.+++....+...... 
T Consensus        28 vFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-  105 (657)
T KOG2377|consen   28 VFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-  105 (657)
T ss_pred             eeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH-
Confidence            3344333333 344555566676664422 2222323456799999999995445555568999999885222111110 


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC--ceeeecCCCCeEEEEE
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GTPIRRGFGGLSILKW  261 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~--~~~~~~~~~~v~~~~~  261 (444)
                                          ..-+.. ...|....|+.+ .-+|..+..|  +-+|.+...+  ......++-.|.-..|
T Consensus       106 --------------------~~ck~k-~~~IlGF~W~~s-~e~A~i~~~G--~e~y~v~pekrslRlVks~~~nvnWy~y  161 (657)
T KOG2377|consen  106 --------------------QECKTK-NANILGFCWTSS-TEIAFITDQG--IEFYQVLPEKRSLRLVKSHNLNVNWYMY  161 (657)
T ss_pred             --------------------HHhccC-cceeEEEEEecC-eeEEEEecCC--eEEEEEchhhhhhhhhhhcccCccEEEE
Confidence                                001111 246889999866 6677777766  6777655432  3335567778888999


Q ss_pred             ecCCCeEEEEe--cCCcEEEEECCCCceec
Q 013347          262 SPTGDYFFAAK--FDGTFYLWETNTWTSEP  289 (444)
Q Consensus       262 sp~~~~l~~~~--~d~~v~iwd~~~~~~~~  289 (444)
                      .++.+.++.++  ..+++.=+.++++...+
T Consensus       162 c~et~v~LL~t~~~~n~lnpf~~~~~~v~k  191 (657)
T KOG2377|consen  162 CPETAVILLSTTVLENVLNPFHFRAGTMSK  191 (657)
T ss_pred             ccccceEeeeccccccccccEEEeeceeee
Confidence            99887654333  45555556666655433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.51  E-value=1.4  Score=42.96  Aligned_cols=53  Identities=21%  Similarity=0.112  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCceeeecCC---------CCe--EEEEEecCCCeEEEEecCCcEEEEECCCCceec
Q 013347          235 SFTIWDVAQGLGTPIRRGF---------GGL--SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~---------~~v--~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      .+.-.|+.+++.+......         ...  ..+..  .+..++.++.||.|+.+|.++++...
T Consensus       367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW  430 (488)
T cd00216         367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW  430 (488)
T ss_pred             EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence            6767777777655433322         111  11222  46778888899999999999998843

The alignment model contains an 8-bladed beta-propeller.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.39  E-value=0.61  Score=45.90  Aligned_cols=111  Identities=19%  Similarity=0.304  Sum_probs=73.5

Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEEEEEe--cCCCeEEEEecCC
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILKWS--PTGDYFFAAKFDG  275 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~~~~s--p~~~~l~~~~~d~  275 (444)
                      |.....+...- ..+.-+.-+.-++ ++....++.++.|||.+.+......  ...+.|.++.|.  |+++.+++.+..+
T Consensus        19 w~~t~~~~T~i-~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   19 WLLTSTFETGI-SNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEEEEEEecCC-CCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            45555555543 4556666666444 4555656669999999988644332  347889999986  5899998888899


Q ss_pred             cEEEEECC-----CCce-------eccccCC-CceeEEEECCCCCEEEEE
Q 013347          276 TFYLWETN-----TWTS-------EPWSSTS-GFVTGATWDPEGRMILLA  312 (444)
Q Consensus       276 ~v~iwd~~-----~~~~-------~~~~~~~-~~v~~~~~sp~g~~l~~~  312 (444)
                      .|.+|--.     ....       ..+..+. .+|.+..|.++|.+++.+
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s  146 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS  146 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe
Confidence            99998532     1111       1122232 578899999999887754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.38  E-value=0.003  Score=57.87  Aligned_cols=144  Identities=16%  Similarity=0.216  Sum_probs=103.4

Q ss_pred             CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347          142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (444)
Q Consensus       142 ~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (444)
                      +-.......|-+.+..++.++.+..+..||-.....                            +.....+....++|..
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~----------------------------le~n~tg~aldm~wDk   84 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI----------------------------LELNPTGKALDMAWDK   84 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhccee----------------------------cccCCchhHhhhhhcc
Confidence            434445577999988999998899999988652111                            1111124567788888


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc-CCCceeE
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTG  299 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~  299 (444)
                      ++..++......+.+.+||+.+.....+... ...-.-+.|++.+..++.+...+.+++++..+.......+ |...+.+
T Consensus        85 egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq  164 (615)
T KOG2247|consen   85 EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQ  164 (615)
T ss_pred             ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeE
Confidence            8887766555445999999987755543322 2222237799988899999899999999998877766565 8899999


Q ss_pred             EEECCCCCEEEEEE
Q 013347          300 ATWDPEGRMILLAF  313 (444)
Q Consensus       300 ~~~sp~g~~l~~~~  313 (444)
                      +++.+.+..+...+
T Consensus       165 ~av~lEd~vil~dc  178 (615)
T KOG2247|consen  165 IAVTLEDYVILCDC  178 (615)
T ss_pred             EEecccceeeecCc
Confidence            99999988776544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.36  E-value=1.7  Score=37.75  Aligned_cols=190  Identities=14%  Similarity=0.139  Sum_probs=104.9

Q ss_pred             EEEEeeccCCCceEEEEEccCCCeEEEEeeCC-CeEEEEEcCCCCceeeecCCCCe--EEEEEecCCCeEEEEecCCcEE
Q 013347          202 LVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFDGTFY  278 (444)
Q Consensus       202 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~~i~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~~d~~v~  278 (444)
                      +++.+..........+.|..+|.++-+.+.-| ..|+.+|+.+++...........  ..++.. +++.....-.++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence            44454444445667788878888887777654 27999999999876544433332  234444 344445666789999


Q ss_pred             EEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCC----ce
Q 013347          279 LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQ----GI  352 (444)
Q Consensus       279 iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~v  352 (444)
                      +||..+-+........+.=+.++  .+++.|+.+ +++.+++.++-.             +....+++.  ...    .+
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~-------------~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMS-DGSSRLYFLDPE-------------TFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TT-------------T-SEEEEEE-EETTEE---E
T ss_pred             EEccccceEEEEEecCCcceEEE--cCCCEEEEE-CCccceEEECCc-------------ccceEEEEEEEECCEECCCc
Confidence            99999877643333344556666  466666654 444556555521             111222211  111    45


Q ss_pred             eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-------C---CCCCcceeeeeCCC
Q 013347          353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-------P---GDNPKPVAFSFHDK  415 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~---~~~i~~v~~spdg~  415 (444)
                      +-+.|- +|...|=.-..      ..|..-|..+|++....-+..+..       +   .+....+||.|..+
T Consensus       178 NELE~i-~G~IyANVW~t------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~  243 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQT------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD  243 (264)
T ss_dssp             EEEEEE-TTEEEEEETTS------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred             EeEEEE-cCEEEEEeCCC------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence            667775 66665554443      689999999998875433322211       0   23356777776543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.46  Score=48.82  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=86.1

Q ss_pred             eccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCcee------eec------CCCCeEEEEEecCCC-eEEEEe
Q 013347          207 RSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTP------IRR------GFGGLSILKWSPTGD-YFFAAK  272 (444)
Q Consensus       207 ~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~------~~~------~~~~v~~~~~sp~~~-~l~~~~  272 (444)
                      +-|..-.+..+...+|+...++.. .+|..|..||+++-....      +..      ......++.|+|.-. ..+...
T Consensus        96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l  175 (1405)
T KOG3630|consen   96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL  175 (1405)
T ss_pred             eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence            334345667777778876654432 233378899987642211      111      123456788988643 235666


Q ss_pred             cCCcEEEEECCCCceec-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc----
Q 013347          273 FDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT----  347 (444)
Q Consensus       273 ~d~~v~iwd~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  347 (444)
                      .|+.|++..+....... ........++++|+|.|+.++++..+ +++..+...              .+....+.    
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn-Gt~vQy~P~--------------leik~~ip~Pp~  240 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN-GTEVQYEPS--------------LEIKSEIPEPPV  240 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC-CeEEEeecc--------------cceeecccCCCc
Confidence            78888887765433321 22445678999999999999987554 554444321              11111111    


Q ss_pred             -cCCceeEEEECCCCCEEEEEe
Q 013347          348 -GSQGIEKIAWDASGERLAVSY  368 (444)
Q Consensus       348 -~~~~v~~~~~spdg~~l~~~~  368 (444)
                       ....|.++.|-....++++-+
T Consensus       241 ~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  241 EENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             CCCcceeEEEEecceeEEEEec
Confidence             112688888887777776543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.23  E-value=1.5  Score=36.53  Aligned_cols=162  Identities=10%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---C---cEEEE-ecCCC---CCccee
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---G---GICIW-APSYP---GNAASV  181 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g---~v~iw-~~~~~---~~~~~~  181 (444)
                      +.|..+...+.|.+|++... .........--+.|..+.++..|+++++-=.+   .   .+|+| |++..   ..+-.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~-~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQE-ECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccC-CCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            44544467788999999843 22222223455889999999998888887553   3   56664 33321   111111


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc----eeeec------
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRR------  251 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~------  251 (444)
                      .-...................+ .+.-  ...+.+++-.|-...|+.|+.+  .+.+|.+.....    ..+..      
T Consensus       108 RiaG~~v~~~~~~~~~~qleii-ElPl--~~~p~ciaCC~~tG~LlVg~~~--~l~lf~l~~~~~~~~~~~~lDFe~~l~  182 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEII-ELPL--SEPPLCIACCPVTGNLLVGCGN--KLVLFTLKYQTIQSEKFSFLDFERSLI  182 (215)
T ss_pred             EEcccccccCCCCccccceEEE-EecC--CCCCCEEEecCCCCCEEEEcCC--EEEEEEEEEEEEecccccEEechhhhh
Confidence            1110000000111111112222 1222  3577888888844445555544  799998765422    11111      


Q ss_pred             -C--CCCeEEEEEecCCCeEEEEecCCcEEEEEC
Q 013347          252 -G--FGGLSILKWSPTGDYFFAAKFDGTFYLWET  282 (444)
Q Consensus       252 -~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~  282 (444)
                       +  .-.+..+++.  +.++|..+ +..++++.+
T Consensus       183 ~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  183 DHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             heecCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence             1  1123444443  56776665 456666654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.69  E-value=2.5  Score=36.22  Aligned_cols=143  Identities=17%  Similarity=0.064  Sum_probs=86.1

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccccc
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  190 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  190 (444)
                      ..+++.|+..+.+.--|..+ ++.....  .-...+.+-+.- -|..++.++..|.+++.+.+++.........      
T Consensus        23 kT~v~igSHs~~~~avd~~s-G~~~We~--ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------   92 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQS-GNLIWEA--ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------   92 (354)
T ss_pred             ceEEEEecCCceEEEecCCC-CcEEeeh--hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh------
Confidence            35667788888888888877 4433321  223344433333 2356788888899999998855443322211      


Q ss_pred             ccccCCCCceEEEEEeeccCCCce-EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe-EEEEEecCCCeE
Q 013347          191 ALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL-SILKWSPTGDYF  268 (444)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v-~~~~~sp~~~~l  268 (444)
                                           +.| ......+++..+..++.|+ +.+..|.++..++....-.+.+ .+.+..|-...|
T Consensus        93 ---------------------~~vk~~a~~d~~~glIycgshd~-~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl  150 (354)
T KOG4649|consen   93 ---------------------ETVKVRAQCDFDGGLIYCGSHDG-NFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL  150 (354)
T ss_pred             ---------------------hhhccceEEcCCCceEEEecCCC-cEEEecccccceEEecccCCceeccceecCCCceE
Confidence                                 111 2234567999999999998 9999999988777654433333 345566633334


Q ss_pred             EEEecCCcEEEEECCCC
Q 013347          269 FAAKFDGTFYLWETNTW  285 (444)
Q Consensus       269 ~~~~~d~~v~iwd~~~~  285 (444)
                      ..+...|.+.--..+..
T Consensus       151 y~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  151 YAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEEeccceEEEEccCCC
Confidence            44445565554444443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.64  E-value=6.1  Score=40.53  Aligned_cols=238  Identities=13%  Similarity=0.048  Sum_probs=118.0

Q ss_pred             ceEEEEEec-C---CCeEEEEE---CCCeEEEEEccCCC-CceeEEecCCCCCeEEEE--EeeCCCeEEEEecCCcEEEE
Q 013347          101 DLQGVSWHQ-H---KHIVAFIS---GSTQVIVRDYEDSG-KDACILTSDSQRDVKVLE--WRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus       101 ~v~~~~~sp-~---g~~la~~~---~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~--~s~~~~~ll~~~~dg~v~iw  170 (444)
                      +|.++..-. +   +..+++++   .||+++|....-+- ....+-..+ -..++.+.  +.++-...+..+--+.-++.
T Consensus       355 PI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrvl  433 (1096)
T KOG1897|consen  355 PIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRVL  433 (1096)
T ss_pred             ceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccceEEE
Confidence            566665543 2   24566655   78999998765431 112222223 45677777  44332234444544444555


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      .+...  .......                       +-. .....+..| -.++.|+-...+  .|++++-. +.....
T Consensus       434 ~i~~e--~ee~~~~-----------------------gf~-~~~~Tif~S~i~g~~lvQvTs~--~iRl~ss~-~~~~~W  484 (1096)
T KOG1897|consen  434 NISEE--VEETEDP-----------------------GFS-TDEQTIFCSTINGNQLVQVTSN--SIRLVSSA-GLRSEW  484 (1096)
T ss_pred             EEccc--eEEeccc-----------------------ccc-ccCceEEEEccCCceEEEEecc--cEEEEcch-hhhhcc
Confidence            55421  1111100                       000 111122222 133444444443  47777755 222222


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCC------CEEEEEEcCCceEEE
Q 013347          250 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG------RMILLAFAGSLTLGS  321 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g------~~l~~~~~~~~~~~~  321 (444)
                      . ..+.++..+.+.+...++.++.++.+...++..+....  .......|.|+.++|-|      +++++|...+.....
T Consensus       485 ~-~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l  563 (1096)
T KOG1897|consen  485 R-PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL  563 (1096)
T ss_pred             c-CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence            2 23444444445555677777777777777776655422  22445678999999753      256666655433222


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      ..+.+.           .......+.+..   .|.-..|--|..+|.++..|      |.+.-|-+..
T Consensus       564 ~~~pd~-----------~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd------G~l~~fv~d~  614 (1096)
T KOG1897|consen  564 TFLPDL-----------ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGD------GALLYFVLDI  614 (1096)
T ss_pred             EECCCc-----------ceeeeeccCCCccchheeeEEeeccceEEEEEcCC------ceEEEEEEEc
Confidence            222110           111111112221   35555666678899998888      8887665544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.61  E-value=2.3  Score=35.50  Aligned_cols=125  Identities=13%  Similarity=0.038  Sum_probs=68.7

Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEEEEEcCCc-----eEEEEEeecC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASK  327 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~-----~~~~~~~~~~  327 (444)
                      ....++-... ..|+.+.....|.+|++.+....  .....-+.|..+.++..|.+|++--.+..     .++.+.-|..
T Consensus        19 EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   19 EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence            3334444432 34444455678999999844432  22344578999999999999997543322     3355555554


Q ss_pred             CCCcCCCcC----C--CCc---------ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          328 PPSLDAHLL----P--VDL---------PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       328 ~~~~~~~~~----~--~~~---------~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      .......+.    .  .+.         -.+-.+.-..++.+++-.|-..-|++|+.       +++.+|.++..
T Consensus        98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-------~~l~lf~l~~~  165 (215)
T PF14761_consen   98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-------NKLVLFTLKYQ  165 (215)
T ss_pred             hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-------CEEEEEEEEEE
Confidence            311111100    0  000         01112222226678888885444555554       68999998753

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.56  E-value=0.69  Score=47.67  Aligned_cols=100  Identities=16%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             CceEEEEEccCCCe-EEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec
Q 013347          212 EQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       212 ~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      ....++.|+|.-.. .+....|+ .|++..+....... ........++++|+|.|+.++.|-..|++.-|...-.....
T Consensus       156 vf~~~~~wnP~vp~n~av~l~dl-sl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~  234 (1405)
T KOG3630|consen  156 VFQLKNVWNPLVPLNSAVDLSDL-SLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE  234 (1405)
T ss_pred             cccccccccCCccchhhhhcccc-chhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec
Confidence            46678889884332 34455666 78877665332221 22345678999999999999999999999988765432222


Q ss_pred             cc----cCCCceeEEEECCCCCEEEEE
Q 013347          290 WS----STSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       290 ~~----~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      +.    .....|.+++|-....++++-
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEe
Confidence            11    125789999998887777753

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.39  E-value=3.1  Score=36.13  Aligned_cols=190  Identities=13%  Similarity=0.067  Sum_probs=106.9

Q ss_pred             eEEEEEecCCCeEEEEECCC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+ ++..........----.++...| ..+..+=.++...+||.++-+   
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~---  121 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLK---  121 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTE---
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccce---
Confidence            45678888888888877555  688888887 44433322222222233444443 333444456888999987322   


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee---ecCC---
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI---RRGF---  253 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~---  253 (444)
                                            .+.++.-.  ..=..++  .|++.|+.+.... .+.++|..+.+....   ....   
T Consensus       122 ----------------------~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~-~L~~~dP~~f~~~~~i~V~~~g~pv  174 (264)
T PF05096_consen  122 ----------------------KIGTFPYP--GEGWGLT--SDGKRLIMSDGSS-RLYFLDPETFKEVRTIQVTDNGRPV  174 (264)
T ss_dssp             ----------------------EEEEEE-S--SS--EEE--ECSSCEEEE-SSS-EEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred             ----------------------EEEEEecC--CcceEEE--cCCCEEEEECCcc-ceEEECCcccceEEEEEEEECCEEC
Confidence                                  22233222  2224444  4677776665555 899999887654432   2222   


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc----------------cCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------------STSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      ..+.-+.|- +|...|-.-....|...|..+|+.....                ....-.+.++|.|....+++++-.=.
T Consensus       175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp  253 (264)
T PF05096_consen  175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP  253 (264)
T ss_dssp             --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred             CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence            346677776 6766666666778888899998863211                11345799999998887777654333


Q ss_pred             eEEEEEe
Q 013347          318 TLGSIHF  324 (444)
Q Consensus       318 ~~~~~~~  324 (444)
                      .++.+++
T Consensus       254 ~lyeV~l  260 (264)
T PF05096_consen  254 KLYEVKL  260 (264)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            4444443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13684 Ycf48-like protein; Provisional

Probab=94.34  E-value=4.1  Score=37.35  Aligned_cols=153  Identities=20%  Similarity=0.250  Sum_probs=75.7

Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEE-EECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCC
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYL-WETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~i-wd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~  330 (444)
                      .+.+..+.+.|++.+++++. .|.+.. +|-........ ......++++.+.++++.++++..  +.   +.+....  
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~--G~---~~~~s~d--  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG--GQ---IRFNDPD--  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC--CE---EEEccCC--
Confidence            45788899999887666554 554443 22221112222 234567899999999998776533  22   2221000  


Q ss_pred             cCCCcCCCCccccccc-c-cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcce
Q 013347          331 LDAHLLPVDLPDIVSL-T-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  408 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~-~-~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v  408 (444)
                       .+..|    ..+..- . ....+.++.+.|+++.++++. +      |.+. .....++.-  .......+-....+.+
T Consensus       244 -~G~sW----~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~------G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~  308 (334)
T PRK13684        244 -DLESW----SKPIIPEITNGYGYLDLAYRTPGEIWAGGG-N------GTLL-VSKDGGKTW--EKDPVGEEVPSNFYKI  308 (334)
T ss_pred             -CCCcc----ccccCCccccccceeeEEEcCCCCEEEEcC-C------CeEE-EeCCCCCCC--eECCcCCCCCcceEEE
Confidence             01111    111110 0 111578899999888776654 3      5443 344444322  1111001112345566


Q ss_pred             eeeeCCCCCCCceEEEEeccceeeee
Q 013347          409 AFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       409 ~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      .|..+++.     +++| ..|.|..+
T Consensus       309 ~~~~~~~~-----~~~G-~~G~il~~  328 (334)
T PRK13684        309 VFLDPEKG-----FVLG-QRGVLLRY  328 (334)
T ss_pred             EEeCCCce-----EEEC-CCceEEEe
Confidence            66655443     4444 45666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.21  E-value=1.2  Score=44.98  Aligned_cols=122  Identities=12%  Similarity=0.183  Sum_probs=0.0

Q ss_pred             EEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEE
Q 013347          159 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI  238 (444)
Q Consensus       159 l~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~i  238 (444)
                      +....|+.+.+||-.   ....+...-......-.......+..+.....-. -.|..+.++|+|++++..|..+  |.|
T Consensus        36 Ll~~~d~~L~vWd~~---e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~-f~v~~i~~n~~g~~lal~G~~~--v~V  109 (717)
T PF10168_consen   36 LLACRDGDLFVWDSS---ECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPL-FEVHQISLNPTGSLLALVGPRG--VVV  109 (717)
T ss_pred             eEEEeCCEEEEEECC---CCEEEEEeeccccccccCccccCcceeecCCCCc-eeEEEEEECCCCCEEEEEcCCc--EEE


Q ss_pred             EEcCCC----------------------CceeeecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCc
Q 013347          239 WDVAQG----------------------LGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       239 wd~~~~----------------------~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~  286 (444)
                      -.+...                      ...........|..+.|+|   ++..|+.-..|+++|+||+....
T Consensus       110 ~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  110 LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.11  E-value=0.22  Score=29.38  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=25.7

Q ss_pred             CCeEEEEEecCC---CeEEEEecCCcEEEEECCC
Q 013347          254 GGLSILKWSPTG---DYFFAAKFDGTFYLWETNT  284 (444)
Q Consensus       254 ~~v~~~~~sp~~---~~l~~~~~d~~v~iwd~~~  284 (444)
                      +.+++++|+|..   .+|+.+-.-+.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4778777789999999995

It contains a characteristic DLL sequence motif.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.71  E-value=8.1  Score=38.41  Aligned_cols=165  Identities=16%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             EEEEEccCCCeEEEEeeC-C----CeEEEEEcCCCCceeeecCCCCeEEEEEe-cCCCeEEEEecCC-----cEEEEECC
Q 013347          215 TALSWGPDGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGFGGLSILKWS-PTGDYFFAAKFDG-----TFYLWETN  283 (444)
Q Consensus       215 ~~~~~sp~~~~l~~~~~d-~----~~i~iwd~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~-----~v~iwd~~  283 (444)
                      .+++.. ++...++|+.+ |    .++..||..+++-.....-...-..+... -+|...++|+.||     ++..||..
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence            334433 55778888888 2    26888998888754433322111111111 2677778998886     58889998


Q ss_pred             CCceeccccCCCceeEEEECC-CCCEEEEEEcC-Cc-eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCC
Q 013347          284 TWTSEPWSSTSGFVTGATWDP-EGRMILLAFAG-SL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS  360 (444)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  360 (444)
                      +.+..............+... +|+..++|+.. .. .+..+..++....        .+..+........-..++ .-+
T Consensus       405 ~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--------~W~~~~~M~~~R~~~g~a-~~~  475 (571)
T KOG4441|consen  405 TNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--------TWTLIAPMNTRRSGFGVA-VLN  475 (571)
T ss_pred             CCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--------ceeecCCcccccccceEE-EEC
Confidence            887755443333333333333 44444444322 22 3344444443110        112222222111111122 236


Q ss_pred             CCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          361 GERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       361 g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +.+.+.|+.++. ....+|..||..+.+..
T Consensus       476 ~~iYvvGG~~~~-~~~~~VE~ydp~~~~W~  504 (571)
T KOG4441|consen  476 GKIYVVGGFDGT-SALSSVERYDPETNQWT  504 (571)
T ss_pred             CEEEEECCccCC-CccceEEEEcCCCCcee
Confidence            777888887742 12245888998887654

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.69  E-value=9.6  Score=39.22  Aligned_cols=161  Identities=16%  Similarity=0.090  Sum_probs=88.0

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCe---EEEEec-CCcEEEEec
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGR---SLSVGC-KGGICIWAP  172 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~---ll~~~~-dg~v~iw~~  172 (444)
                      ...++..+.+.+...++.++.++.+....+.. +.............|.|+.++|-  +..   +++.|. +..+.+.-.
T Consensus       487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~-~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~  565 (1096)
T KOG1897|consen  487 PGKITIGVVSANASQVVVAGGGLALFYLEIED-GGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF  565 (1096)
T ss_pred             CCceEEEEEeecceEEEEecCccEEEEEEeec-cceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence            34566777777777888888778877777776 33333333445678999999975  333   555553 444433322


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeecc-CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee---
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---  248 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~---  248 (444)
                      ......                      .+...+.+. -...|.-..+--|..+|.++..|| .+..|-+.....+.   
T Consensus       566 ~pd~~~----------------------~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG-~l~~fv~d~~tg~lsd~  622 (1096)
T KOG1897|consen  566 LPDLIL----------------------ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG-ALLYFVLDINTGQLSDR  622 (1096)
T ss_pred             CCCcce----------------------eeeeccCCCccchheeeEEeeccceEEEEEcCCc-eEEEEEEEcccceEccc
Confidence            211100                      000011111 013455555656688999999998 88777655432221   


Q ss_pred             --eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          249 --IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       249 --~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                        ..-...++.--.|+..++.-+.+..|.-..+|--+
T Consensus       623 Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n  659 (1096)
T KOG1897|consen  623 KKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN  659 (1096)
T ss_pred             cccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence              11223455545566655544444456656666544

>PHA02713 hypothetical protein; Provisional

Probab=93.56  E-value=3.3  Score=41.09  Aligned_cols=54  Identities=15%  Similarity=0.176  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCceeeecCC-CCeEEEEEecCCCeEEEEecC------CcEEEEECCC-Ccee
Q 013347          235 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFD------GTFYLWETNT-WTSE  288 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~~~-~~~~  288 (444)
                      .+..||..+.+-..+.... ......+..-+++..+.|+.+      ..+..||..+ .+..
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence            5778888877544332211 111111122256666777654      2467899988 5654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.56  E-value=8.7  Score=38.28  Aligned_cols=49  Identities=8%  Similarity=0.168  Sum_probs=37.4

Q ss_pred             CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       121 g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      -.|+|++..  |+......-.|. .+-.+.|+.+ ..|++...+|++.+|++-
T Consensus        64 ~~I~If~~s--G~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   64 PYIRIFNIS--GQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLL  112 (829)
T ss_pred             eeEEEEecc--ccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecc
Confidence            347777776  555444433454 7788999999 899999999999999986

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.47  E-value=0.44  Score=28.13  Aligned_cols=30  Identities=10%  Similarity=0.221  Sum_probs=25.8

Q ss_pred             ceEEEEEecCC---CeEEEEECCCeEEEEEccC
Q 013347          101 DLQGVSWHQHK---HIVAFISGSTQVIVRDYED  130 (444)
Q Consensus       101 ~v~~~~~sp~g---~~la~~~~dg~v~iw~~~~  130 (444)
                      .|+++.|||+.   .+|+.+-..|.|.|+|+.+
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            48999999854   5899888899999999985

It contains a characteristic DLL sequence motif.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.25  E-value=2.9  Score=31.94  Aligned_cols=63  Identities=8%  Similarity=0.037  Sum_probs=41.3

Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec----CCCeEEEEecCCcEEEEECCCCce
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP----TGDYFFAAKFDGTFYLWETNTWTS  287 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~d~~v~iwd~~~~~~  287 (444)
                      +...|+.|+..  .+..||+..+.......-...+.++.+-.    +..++++|+ +-.|.-||....+.
T Consensus        63 ~~D~LliGt~t--~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   63 GRDCLLIGTQT--SLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI  129 (136)
T ss_pred             CcCEEEEeccc--eEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence            44567777765  69999999887776666667788777643    233444443 55677777665443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.21  E-value=8  Score=36.88  Aligned_cols=53  Identities=9%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-----EEecCCCCCeEEEEEeeC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-----ILTSDSQRDVKVLEWRPN  154 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~~~v~~l~~s~~  154 (444)
                      -+.|+|.|||++|++--..|.|++++.........     .......+....|+++|+
T Consensus        32 Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        32 PWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             ceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence            67899999998887654469999987654211111     111113577899999987

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PHA03098 kelch-like protein; Provisional

Probab=93.02  E-value=3.2  Score=41.05  Aligned_cols=69  Identities=9%  Similarity=-0.005  Sum_probs=39.0

Q ss_pred             CCCeEEEEeeCC-------CeEEEEEcCCCCceeeecCC--CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCce
Q 013347          222 DGRYLASASYES-------SSFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS  287 (444)
Q Consensus       222 ~~~~l~~~~~d~-------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~  287 (444)
                      +++.++.|+.++       ..+.+||..+++...+....  ..-.+++. -+++.++.|+.+     +.+.+||..+.+.
T Consensus       437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            566666666432       13888998877654432211  11111222 266666777654     4688888887766


Q ss_pred             eccc
Q 013347          288 EPWS  291 (444)
Q Consensus       288 ~~~~  291 (444)
                      ..+.
T Consensus       516 ~~~~  519 (534)
T PHA03098        516 TLFC  519 (534)
T ss_pred             EecC
Confidence            4443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.96  E-value=6.6  Score=35.23  Aligned_cols=101  Identities=19%  Similarity=0.339  Sum_probs=57.1

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEEC-CCCce-e
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET-NTWTS-E  288 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~-~~~~~-~  288 (444)
                      ..+..+.-++||+++++++.-. ...-||-....-.+ .......|..+.|.|++.+.+.+ ..|.|+.=+. ...+. .
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~-~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGN-FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSS-EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             ceeEeEEECCCCcEEEEECccc-EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            6788889999999888876544 66677754433333 33356889999999998776654 7788887762 22211 1


Q ss_pred             ----ccccCCCceeEEEECCCCCEEEEEEc
Q 013347          289 ----PWSSTSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       289 ----~~~~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                          ........+..++|.++++..+++++
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence                11123334789999999888776644

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.85  E-value=0.87  Score=42.05  Aligned_cols=163  Identities=13%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC----CeE-EEEEeeCCCeEEEEecCCcEEEE-ecCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR----DVK-VLEWRPNGGRSLSVGCKGGICIW-APSY  174 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~----~v~-~l~~s~~~~~ll~~~~dg~v~iw-~~~~  174 (444)
                      +|..+-..|||+++..-+. .++.|+++.+..-....+.....+    .|+ ++..-..|..+++...||.|.-| |+..
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~  300 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR  300 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence            5777889999999987655 788899888642222222112111    222 22223345678888889888766 5553


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG  254 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~  254 (444)
                      .+.+..                    ..++.++-. ...+..+.-..+.+-+++-+..| ++.++.....+.......-.
T Consensus       301 ~~~p~l--------------------~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G-~L~~f~st~~~~lL~~~~~~  358 (733)
T COG4590         301 DGQPHL--------------------NHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNG-TLQSFYSTSEKLLLFERAYQ  358 (733)
T ss_pred             CCCCcc--------------------eeeeccccC-cccceeeccccccceEEEEcCCC-ceeeeecccCcceehhhhhc
Confidence            332211                    111112111 13343333333445566667776 88877655444433333335


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  287 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~  287 (444)
                      .+..+++||.+.++++-. .|.++++.+++...
T Consensus       359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         359 APQLVAMSPNQAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             CcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence            677899999999988654 57899998877554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.76  E-value=5  Score=38.20  Aligned_cols=54  Identities=13%  Similarity=0.210  Sum_probs=38.1

Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cc-----cCCCceeEEEECCCC
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS-----STSGFVTGATWDPEG  306 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~-----~~~~~v~~~~~sp~g  306 (444)
                      -...+.|+|.|||++|++--..|.|++++..++....   +.     ........++++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3567889999999877776556999999876543311   11     134667899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.59  E-value=6.5  Score=34.17  Aligned_cols=152  Identities=16%  Similarity=0.100  Sum_probs=101.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW  290 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  290 (444)
                      .....++-.|||..-+++...+ .|--.|-.+++..... +.......+..-|||..-++-+.. .|.-.|.++.+...+
T Consensus        62 ~ap~dvapapdG~VWft~qg~g-aiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f  139 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTG-AIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF  139 (353)
T ss_pred             CCccccccCCCCceEEecCccc-cceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence            5667888899998888877776 8888888888776643 334556778889998877664433 577778877776443


Q ss_pred             c----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEE
Q 013347          291 S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERL  364 (444)
Q Consensus       291 ~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l  364 (444)
                      .    ......+...|.+.|.+-+++..  +.-+.++-              ....++.+....  .-..|+..|||..-
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~--G~yGrLdP--------------a~~~i~vfpaPqG~gpyGi~atpdGsvw  203 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQI--GAYGRLDP--------------ARNVISVFPAPQGGGPYGICATPDGSVW  203 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeecc--ccceecCc--------------ccCceeeeccCCCCCCcceEECCCCcEE
Confidence            3    33456788999999998887532  22222221              122333343322  56788899999987


Q ss_pred             EEEecCCCccccceEEEEEcCCC
Q 013347          365 AVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      ++.-.+      +.|-..|..++
T Consensus       204 yaslag------naiaridp~~~  220 (353)
T COG4257         204 YASLAG------NAIARIDPFAG  220 (353)
T ss_pred             EEeccc------cceEEcccccC
Confidence            776655      67777776654

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.54  E-value=0.019  Score=52.89  Aligned_cols=134  Identities=13%  Similarity=0.170  Sum_probs=94.2

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceee
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~  182 (444)
                      ...|-|.+.-++.++.+..+..||-..  +....  ..-++....++|..++..++.... .+.+.+|++... ..+.+.
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le--~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~e-ytqqLE  113 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAG--QVILE--LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE-YTQQLE  113 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhc--ceecc--cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhh-hHHHHh
Confidence            457788877788888898999998763  22222  244566778999988777665554 599999999832 222222


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEE
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKW  261 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~  261 (444)
                      .+                       +.  ..-.-+.|++.+..++.+...+ .+.|++..+.+.....+ |..++.+++|
T Consensus       114 ~g-----------------------g~--~s~sll~wsKg~~el~ig~~~g-n~viynhgtsR~iiv~Gkh~RRgtq~av  167 (615)
T KOG2247|consen  114 SG-----------------------GT--SSKSLLAWSKGTPELVIGNNAG-NIVIYNHGTSRRIIVMGKHQRRGTQIAV  167 (615)
T ss_pred             cc-----------------------Cc--chHHHHhhccCCcccccccccc-ceEEEeccchhhhhhhcccccceeEEEe
Confidence            22                       11  1122377899888888888887 99999988877666666 8889999999


Q ss_pred             ecCCCeE
Q 013347          262 SPTGDYF  268 (444)
Q Consensus       262 sp~~~~l  268 (444)
                      .+.+..+
T Consensus       168 ~lEd~vi  174 (615)
T KOG2247|consen  168 TLEDYVI  174 (615)
T ss_pred             cccceee
Confidence            9876543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.51  E-value=5.9  Score=33.52  Aligned_cols=204  Identities=12%  Similarity=0.057  Sum_probs=91.0

Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCC--CeEEEEecCC-cEEEEECCCCc--e-ec---
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG--DYFFAAKFDG-TFYLWETNTWT--S-EP---  289 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~-~v~iwd~~~~~--~-~~---  289 (444)
                      |.-..+.|+...-..+.|+-||+.+.+.....-....+.++.+--.+  +.++++...+ .|.-||-....  . .+   
T Consensus        22 w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~e  101 (310)
T KOG4499|consen   22 WDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFE  101 (310)
T ss_pred             eEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccc
Confidence            33333344444433337888999887655432222223344443222  2333333222 33346632211  1 11   


Q ss_pred             cc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEE
Q 013347          290 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAV  366 (444)
Q Consensus       290 ~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~  366 (444)
                      +.  ......+.-..+|+|++.+-..++.+.  .+..+..    ....|. ....+..+...- --+.++|+.|.+.+..
T Consensus       102 v~~d~kknR~NDgkvdP~Gryy~GtMad~~~--~le~~~g----~Ly~~~-~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~  174 (310)
T KOG4499|consen  102 VQPDRKKNRLNDGKVDPDGRYYGGTMADFGD--DLEPIGG----ELYSWL-AGHQVELIWNCVGISNGLAWDSDAKKFYY  174 (310)
T ss_pred             cCchHHhcccccCccCCCCceeeeeeccccc--ccccccc----EEEEec-cCCCceeeehhccCCccccccccCcEEEE
Confidence            11  124456677789999995533332211  1111100    000000 011111111111 2256899988887776


Q ss_pred             EecCCCccccceEEEEE--cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC--CCceEEEEeccceeeeeeee
Q 013347          367 SYKGGDDIYKGLIAIYD--ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK--QGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~--~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ..+-+     -+|.-||  ..+|.+.....+..++... +-  =..-|||-.+  .|.+-..+|+.|+|.-++..
T Consensus       175 iDsln-----~~V~a~dyd~~tG~~snr~~i~dlrk~~-~~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  175 IDSLN-----YEVDAYDYDCPTGDLSNRKVIFDLRKSQ-PF--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             EccCc-----eEEeeeecCCCcccccCcceeEEeccCC-Cc--CCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            54331     6777787  5666554333332333210 00  0112444332  24466778999999877653

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.33  E-value=0.61  Score=38.11  Aligned_cols=34  Identities=24%  Similarity=0.035  Sum_probs=27.2

Q ss_pred             CCcceeeeeCCCCCC-CceEEEEeccceeeeeeee
Q 013347          404 NPKPVAFSFHDKFKQ-GPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       404 ~i~~v~~spdg~~~~-~~~l~~~~~~g~i~~~~~~  437 (444)
                      .+..++|||-|--.. ..+|++..++|+|.+|.-.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            678899999886433 5688889999999988754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=9.9  Score=35.57  Aligned_cols=101  Identities=13%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-
Q 013347          211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-  284 (444)
Q Consensus       211 ~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-  284 (444)
                      .+.|.++.||+|.+.||.--.+. +|.+++....+.....     .....|....|+.+ .-++.....| +-+|-... 
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~-~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSK-TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCc-eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            47999999999999999988887 9999998554433222     22345889999855 5566655444 56665543 


Q ss_pred             -CceeccccCCCceeEEEECCCCCEEEEEEc
Q 013347          285 -WTSEPWSSTSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       285 -~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                       ........+...|+-..|.++.+.++.+.+
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence             333556678888888999999887765544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.15  E-value=1  Score=26.37  Aligned_cols=27  Identities=22%  Similarity=0.474  Sum_probs=21.5

Q ss_pred             CCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      |++++|+++..+.     ++|.++|..+++..
T Consensus         1 pd~~~lyv~~~~~-----~~v~~id~~~~~~~   27 (42)
T TIGR02276         1 PDGTKLYVTNSGS-----NTVSVIDTATNKVI   27 (42)
T ss_pred             CCCCEEEEEeCCC-----CEEEEEECCCCeEE
Confidence            6888888877653     89999999887665

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=92.04  E-value=3.2  Score=35.81  Aligned_cols=142  Identities=15%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCceeeecCC-CCeEEEEEecCCCeEEEEec-C--CcEEEEECCC-C-ceec-----cccCCCceeEEEEC
Q 013347          235 SFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKF-D--GTFYLWETNT-W-TSEP-----WSSTSGFVTGATWD  303 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-d--~~v~iwd~~~-~-~~~~-----~~~~~~~v~~~~~s  303 (444)
                      .-.+||+.+++...+.... --..+-.+-+||++|.+|+. +  ..+++++..+ . ....     ......+--++..-
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            4568898888766544322 22223356789999988875 2  3688888654 1 1111     11233444556667


Q ss_pred             CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc---cCCceeEEEECCCCCEEEEEecCCCccccceEE
Q 013347          304 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA  380 (444)
Q Consensus       304 p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~  380 (444)
                      |||+.|++++...   -.+.++..... .....  ....+....   ...---.+...|||++++.+..+        -.
T Consensus       127 ~DG~vlIvGG~~~---~t~E~~P~~~~-~~~~~--~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--------s~  192 (243)
T PF07250_consen  127 PDGRVLIVGGSNN---PTYEFWPPKGP-GPGPV--TLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--------SI  192 (243)
T ss_pred             CCCCEEEEeCcCC---CcccccCCccC-CCCce--eeecchhhhccCccccCceEEEcCCCCEEEEEcCC--------cE
Confidence            8999999886652   22333322100 00000  001111111   11122345667999999888754        56


Q ss_pred             EEEcCCCCeE
Q 013347          381 IYDARRTPLI  390 (444)
Q Consensus       381 vwd~~~~~~~  390 (444)
                      |||.++++++
T Consensus       193 i~d~~~n~v~  202 (243)
T PF07250_consen  193 IYDYKTNTVV  202 (243)
T ss_pred             EEeCCCCeEE
Confidence            7798887654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.04  E-value=1.4  Score=37.46  Aligned_cols=57  Identities=21%  Similarity=0.336  Sum_probs=41.1

Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCceec--------cc-------cCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSEP--------WS-------STSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--------~~-------~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      +..++++|++.+.+|.+++||+.+++...        +.       .....|..+.++.+|.-+++-.+++.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~   89 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDS   89 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCE
Confidence            34578899999999999999999887621        11       24456788888888887776544433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.04  E-value=1.2  Score=37.86  Aligned_cols=68  Identities=12%  Similarity=0.225  Sum_probs=49.1

Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCcee-------ee--------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLGTP-------IR--------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-------~~--------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      +..++++|++.+.+| .+++||+.+++...       +.        .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G-~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSG-LLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCC-eEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            445788999999998 99999999875431       11        2346678888888887776655 5778888876


Q ss_pred             CCcee
Q 013347          284 TWTSE  288 (444)
Q Consensus       284 ~~~~~  288 (444)
                      -+...
T Consensus        96 L~~W~  100 (219)
T PF07569_consen   96 LGCWI  100 (219)
T ss_pred             cceeE
Confidence            55443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.76  E-value=0.87  Score=26.65  Aligned_cols=41  Identities=20%  Similarity=0.042  Sum_probs=26.2

Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEE
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW  261 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~  261 (444)
                      |++++|+++....++|.++|..+++......-......++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            57888887776555999999987765543333333344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA03098 kelch-like protein; Provisional

Probab=91.00  E-value=11  Score=37.17  Aligned_cols=69  Identities=3%  Similarity=-0.117  Sum_probs=38.1

Q ss_pred             CCCeEEEEeeCC-----CeEEEEEcCCCCceeeecCCCC-eEEEEEecCCCeEEEEecC--------CcEEEEECCCCce
Q 013347          222 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTS  287 (444)
Q Consensus       222 ~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~  287 (444)
                      +++..+.|+.+.     +.+..||..+++.........+ ....+...+++.++.|+.+        ..+.+||..+++.
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W  468 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW  468 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence            567777776321     2688899887654433221111 1111222356666776643        2388899988776


Q ss_pred             ecc
Q 013347          288 EPW  290 (444)
Q Consensus       288 ~~~  290 (444)
                      ..+
T Consensus       469 ~~~  471 (534)
T PHA03098        469 TEL  471 (534)
T ss_pred             eeC
Confidence            443

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.67  E-value=12  Score=33.44  Aligned_cols=88  Identities=15%  Similarity=0.092  Sum_probs=57.9

Q ss_pred             eEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC-------------------
Q 013347          214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD-------------------  274 (444)
Q Consensus       214 v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------------------  274 (444)
                      ..+..|+ +|++-++-+..| .+..+|.++++...+..-.+....++|.  |++++++-..                   
T Consensus       205 PhSPRWh-dgrLwvldsgtG-ev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~  280 (335)
T TIGR03032       205 PHSPRWY-QGKLWLLNSGRG-ELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDAL  280 (335)
T ss_pred             CcCCcEe-CCeEEEEECCCC-EEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhh
Confidence            3445554 677777777776 9999999888888777777888999998  8887665321                   


Q ss_pred             -CcEEEEECCCCcee---ccccCCCceeEEEECCC
Q 013347          275 -GTFYLWETNTWTSE---PWSSTSGFVTGATWDPE  305 (444)
Q Consensus       275 -~~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~  305 (444)
                       .-|.+.|++++...   .+.+.-..+..++.-|.
T Consensus       281 ~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       281 GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             cccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence             12556666666652   23344444555555554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.60  E-value=21  Score=36.09  Aligned_cols=111  Identities=8%  Similarity=-0.071  Sum_probs=70.1

Q ss_pred             ceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCC-----------C---------ceeeecCCCCeEEEEEe--cCCCeE
Q 013347          213 QITALSWGP--DGRYLASASYESSSFTIWDVAQG-----------L---------GTPIRRGFGGLSILKWS--PTGDYF  268 (444)
Q Consensus       213 ~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~-----------~---------~~~~~~~~~~v~~~~~s--p~~~~l  268 (444)
                      .|+.+....  +...|+.+..|| .|.+|.+++-           .         ..........++.++++  ...++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG-~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDG-DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCC-eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            455555543  455677777777 9999976310           0         01122234678999998  778888


Q ss_pred             EEEecCCcEEEEECCCC--ce--eccccCCCceeEEEECCCC-----CEEEEEEcCCceEEEEEe
Q 013347          269 FAAKFDGTFYLWETNTW--TS--EPWSSTSGFVTGATWDPEG-----RMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       269 ~~~~~d~~v~iwd~~~~--~~--~~~~~~~~~v~~~~~sp~g-----~~l~~~~~~~~~~~~~~~  324 (444)
                      |+++....|.||-....  +.  ..-..+...|-+++|-++.     ...+++++-.+.++.+++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888787777755442  21  1122456678889997643     234445666688888888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.49  E-value=19  Score=35.47  Aligned_cols=172  Identities=13%  Similarity=0.122  Sum_probs=84.3

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecC-CC--CCeEEEEEeeCCCeEEEEec------CCcEEEEecCCCCCcceee
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSD-SQ--RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-~~--~~v~~l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~~~  182 (444)
                      ..++.++.++.+.-.|..+ ++........ +.  ..+++--.--+ +.++++..      +|.|.-+|.++++..-...
T Consensus       121 ~~v~v~t~dg~l~ALDa~T-Gk~~W~~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKT-GKVVWSKKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCC-CCEEeecccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4566677888888888877 5544332211 11  11211111113 45555432      5788888888666554433


Q ss_pred             ccccccc------cccccCC-CCceEEEEEeeccCCCce-EEEEEccCCCeEEEEeeC-----C----------CeEEEE
Q 013347          183 SGAASFL------GALSRGP-GTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASASYE-----S----------SSFTIW  239 (444)
Q Consensus       183 ~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~d-----~----------~~i~iw  239 (444)
                      .......      ....... .+.|.- .... +....+ ..+++.|+..+++.+..+     +          ..|.-.
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~-~~~~-~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl  276 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPG-DAWK-TGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR  276 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCC-Cccc-cCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence            3211100      0000000 011110 0000 011122 234566665555555422     1          156677


Q ss_pred             EcCCCCceeeecC-CC---------CeEEEEEecCCC---eEEEEecCCcEEEEECCCCce
Q 013347          240 DVAQGLGTPIRRG-FG---------GLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTS  287 (444)
Q Consensus       240 d~~~~~~~~~~~~-~~---------~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~  287 (444)
                      |+++++....++. ..         ...-+....+|+   .++.+..+|.+++.|.++++.
T Consensus       277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            8888877653321 11         111222334666   667889999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.42  E-value=0.27  Score=49.16  Aligned_cols=92  Identities=20%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             CceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCC--CCcee------eecCCCCeEEEEEec---CCCeEEEEecCCcEEE
Q 013347          212 EQITALSWGP-DGRYLASASYESSSFTIWDVAQ--GLGTP------IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYL  279 (444)
Q Consensus       212 ~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~--~~~~~------~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~i  279 (444)
                      +.|-.+.|.. +...+.  -.- |.+.+||+.-  |+...      +......+.-+.|.|   +.-++..+-.++.+++
T Consensus       133 G~v~dl~fah~~~pk~~--~~v-g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l  209 (1283)
T KOG1916|consen  133 GGVGDLQFAHTKCPKGR--RLV-GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL  209 (1283)
T ss_pred             CCcccccccccCChHHH--HHh-hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence            5666777743 111121  122 3788998753  33221      112234455566655   5666777777888998


Q ss_pred             EECCCCceeccccCCCceeEEEECCCC
Q 013347          280 WETNTWTSEPWSSTSGFVTGATWDPEG  306 (444)
Q Consensus       280 wd~~~~~~~~~~~~~~~v~~~~~sp~g  306 (444)
                      ....+.....+..|..++..++|-..|
T Consensus       210 L~~~ra~~~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  210 LNINRALRSLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             eeechHHHHHHHhcCCCcccHHHHhhc
Confidence            887766554455687777766654433

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.40  E-value=2.4  Score=29.96  Aligned_cols=52  Identities=15%  Similarity=0.272  Sum_probs=36.6

Q ss_pred             ecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          272 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       272 ~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ..+|.+..||..+++...+...-...+.+++++++..++++-..  .-++.++|
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~--~~Ri~ryw   85 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG--RYRILRYW   85 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG--GTEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc--CceEEEEE
Confidence            34678999999999886666555677999999999998887543  34555555

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.38  E-value=12  Score=32.96  Aligned_cols=141  Identities=13%  Similarity=0.089  Sum_probs=92.5

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      ...+-+..+.++.+  +.+.+-.+..++|.|+.++..+..+...                      ..  .+.-.+  |.
T Consensus        84 ~~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~l----------------------nt--~gyayg--v~  135 (370)
T COG5276          84 NARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFL----------------------NT--DGYAYG--VY  135 (370)
T ss_pred             ehhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccc----------------------cC--CceEEE--EE
Confidence            34556677777765  5666666788999999977666543322                      11  122233  34


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccC---
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST---  293 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---  293 (444)
                      -.|++...+..+. -+.+.|+.+.....+.+    .......++.|  |++-..+..|+-+.+.|+.....-.+.++   
T Consensus       136 vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~  212 (370)
T COG5276         136 VSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT  212 (370)
T ss_pred             ecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec
Confidence            4688988888665 68889998775544332    22334567765  77777788899999999987665444432   


Q ss_pred             CCceeEEEECCCCCEEEEE
Q 013347          294 SGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~  312 (444)
                      ...+.++..+++..+++..
T Consensus       213 g~g~~sv~vsdnr~y~vvy  231 (370)
T COG5276         213 GPGTYSVSVSDNRAYLVVY  231 (370)
T ss_pred             CCceEEEEecCCeeEEEEc
Confidence            3367888888887776654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.26  E-value=3.3  Score=39.24  Aligned_cols=74  Identities=14%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEc----------CCCCcee----------eecC--CCCeEEEEEecCC---Ce
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDV----------AQGLGTP----------IRRG--FGGLSILKWSPTG---DY  267 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~----------~~~~~~~----------~~~~--~~~v~~~~~sp~~---~~  267 (444)
                      .|..+..++.|..++.++.+|  |.|..+          +.++...          ++..  .-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            577888999999999999997  555444          1222111          1111  1245678999975   56


Q ss_pred             EEEEecCCcEEEEECCCCcee
Q 013347          268 FFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       268 l~~~~~d~~v~iwd~~~~~~~  288 (444)
                      |..-+.|+.||+||+......
T Consensus       183 L~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEEEecCcEEEEEecCCcchh
Confidence            777778999999999876553

>PLN02153 epithiospecifier protein

Probab=90.23  E-value=15  Score=33.84  Aligned_cols=55  Identities=15%  Similarity=-0.011  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCceeeecC---C-CCeEEEEEecCCCeEEEEecC--------------CcEEEEECCCCceec
Q 013347          235 SFTIWDVAQGLGTPIRRG---F-GGLSILKWSPTGDYFFAAKFD--------------GTFYLWETNTWTSEP  289 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~---~-~~v~~~~~sp~~~~l~~~~~d--------------~~v~iwd~~~~~~~~  289 (444)
                      .+.+||..+.+-..+...   . ......+...++++++.|+..              +.+..||+.+.+...
T Consensus       218 ~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~  290 (341)
T PLN02153        218 AVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEK  290 (341)
T ss_pred             ceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEe
Confidence            688999888765544321   1 111111222356677777742              267888988766543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.09  E-value=17  Score=34.24  Aligned_cols=152  Identities=16%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ...+..++++.+++.+.....++-||--....+ .-......++++.|.+++..++++..  +.+..-+  +..     .
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~--G~l~~S~--d~G-----~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG--GGLYVSK--GTG-----L  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC--ceEEEec--CCC-----C
Confidence            445566778877766654333333443221111 12233556899999999998886633  2221111  100     0


Q ss_pred             cCCCCccccccccc--C-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          335 LLPVDLPDIVSLTG--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       335 ~~~~~~~~~~~~~~--~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      .+..  ........  . ..+.++.|.+++..+++|..       |.+.... ..++.-  +.......-....+.+.|.
T Consensus       312 ~~~~--~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~-------G~v~~s~-D~G~tW--~~~~~~~~~~~~ly~v~f~  379 (398)
T PLN00033        312 TEED--FDFEEADIKSRGFGILDVGYRSKKEAWAAGGS-------GILLRST-DGGKSW--KRDKGADNIAANLYSVKFF  379 (398)
T ss_pred             cccc--cceeecccCCCCcceEEEEEcCCCcEEEEECC-------CcEEEeC-CCCcce--eEccccCCCCcceeEEEEc
Confidence            0000  01111111  1 15889999999888777653       5555543 333322  1111111224567788887


Q ss_pred             eCCCCCCCceEEEEeccceeeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ++++.     .+.| ++|.|..|
T Consensus       380 ~~~~g-----~~~G-~~G~il~~  396 (398)
T PLN00033        380 DDKKG-----FVLG-NDGVLLRY  396 (398)
T ss_pred             CCCce-----EEEe-CCcEEEEe
Confidence            76553     3333 56666544

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=89.81  E-value=13  Score=37.51  Aligned_cols=191  Identities=21%  Similarity=0.219  Sum_probs=95.7

Q ss_pred             ceEEEEEccCCCeEEEEeeC--C------CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC----cEEEE
Q 013347          213 QITALSWGPDGRYLASASYE--S------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLW  280 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d--~------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iw  280 (444)
                      .+....++|.+..++.....  .      ..+.+-|...   .........+..+.|+|+|+.++..+.++    .+++.
T Consensus        14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~   90 (620)
T COG1506          14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLV   90 (620)
T ss_pred             cccCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEE
Confidence            34445556665555544332  0      1333333332   33444567788899999999997766333    34444


Q ss_pred             ECCCCceeccccCCCceeEEEECCCCCEEEEEEcC-----Cce----EEEEEeecCCCC-cCCCcCCCCcc-cccccccC
Q 013347          281 ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG-----SLT----LGSIHFASKPPS-LDAHLLPVDLP-DIVSLTGS  349 (444)
Q Consensus       281 d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~-----~~~----~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~  349 (444)
                      +.. +   ....+...+....|+|++..++.....     ++.    .-.+.+|..... ....++..... ........
T Consensus        91 ~~~-g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~  166 (620)
T COG1506          91 DVG-G---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLG  166 (620)
T ss_pred             ecC-C---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccCC
Confidence            444 2   333455667888999999888762110     011    000111111101 01111111111 11222222


Q ss_pred             C-ceeEEEECCCCCEEEEEecCCC-ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          350 Q-GIEKIAWDASGERLAVSYKGGD-DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       350 ~-~v~~~~~spdg~~l~~~~~d~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      . .+....+++++..++....+.+ +.+-....++...++.+.      .+......+..+.|.++|+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~gk~  229 (620)
T COG1506         167 NLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE------SLTPGEGSISKLAFDADGKS  229 (620)
T ss_pred             CCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE------EEcCCCceeeeeeeCCCCCe
Confidence            3 6777888888888877766543 222233444444444433      23333444778888888874

>PRK13684 Ycf48-like protein; Provisional

Probab=89.74  E-value=16  Score=33.52  Aligned_cols=150  Identities=16%  Similarity=0.174  Sum_probs=80.0

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEE-EEcCCCCceeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-e
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTI-WDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E  288 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~i-wd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~  288 (444)
                      ..+.++.+.|++.+++++ ..| .+.. +|-....-..+. .....+.++.+.++++.++++ ..|.+++=..+.+.. .
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G-~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRG-NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCc-eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            578899999998766554 444 4432 221111122222 234678899999999877665 457654323444433 2


Q ss_pred             cccc----CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCCE
Q 013347          289 PWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGER  363 (444)
Q Consensus       289 ~~~~----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~  363 (444)
                      ....    ....+.++.+.|++..++++..  +.+.  .-.+.     +..    ...+.....- .....+.|..+++.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--G~v~--~S~d~-----G~t----W~~~~~~~~~~~~~~~~~~~~~~~~  316 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAGGGN--GTLL--VSKDG-----GKT----WEKDPVGEEVPSNFYKIVFLDPEKG  316 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEEcCC--CeEE--EeCCC-----CCC----CeECCcCCCCCcceEEEEEeCCCce
Confidence            1111    2235788999998887765532  2221  11111     111    1111110111 15778888877787


Q ss_pred             EEEEecCCCccccceEEEEEc
Q 013347          364 LAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      +++|..       |.|.-|+-
T Consensus       317 ~~~G~~-------G~il~~~~  330 (334)
T PRK13684        317 FVLGQR-------GVLLRYVG  330 (334)
T ss_pred             EEECCC-------ceEEEecC
Confidence            777654       67776653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.61  E-value=25  Score=35.53  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=49.4

Q ss_pred             CCceEEEEEc--cCCCeEEEEeeCCCeEEEEEcCCC--Ccee--eecCCCCeEEEEEecCC---C---eEEEEecCCcEE
Q 013347          211 GEQITALSWG--PDGRYLASASYESSSFTIWDVAQG--LGTP--IRRGFGGLSILKWSPTG---D---YFFAAKFDGTFY  278 (444)
Q Consensus       211 ~~~v~~~~~s--p~~~~l~~~~~d~~~i~iwd~~~~--~~~~--~~~~~~~v~~~~~sp~~---~---~l~~~~~d~~v~  278 (444)
                      ...+++++++  ...++||+++... .|.||-....  +...  ...+...|-+|+|-++.   .   .+++++-.|.+.
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~-~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~  241 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQ-EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVW  241 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCc-eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEE
Confidence            3578999998  7777777777665 8888765442  1111  22355778899998743   2   677888899998


Q ss_pred             EEEC
Q 013347          279 LWET  282 (444)
Q Consensus       279 iwd~  282 (444)
                      +|++
T Consensus       242 ~~~I  245 (717)
T PF08728_consen  242 TFKI  245 (717)
T ss_pred             EEEE
Confidence            8887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=89.51  E-value=17  Score=33.37  Aligned_cols=112  Identities=16%  Similarity=0.184  Sum_probs=65.3

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----CeEEEEEecCCC--------------eE---E
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-----GLSILKWSPTGD--------------YF---F  269 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~v~~~~~sp~~~--------------~l---~  269 (444)
                      ++...++|...+.-|+.+..-- -+..-+...+....+.....     -...+..+++|.              ++   +
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l  193 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL  193 (376)
T ss_pred             CCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence            6778999999886666654322 23334444443222221110     112333333332              22   2


Q ss_pred             EEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          270 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       270 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      .+..+|++.-||..+.....+...-...+.++.||++.+++++-..  .-+.-++|-
T Consensus       194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~--~~ri~rywi  248 (376)
T KOG1520|consen  194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT--TARIKRYWI  248 (376)
T ss_pred             cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec--cceeeeeEe
Confidence            3345688888999887776666666677899999999999877443  334445553

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.27  E-value=5.4  Score=37.89  Aligned_cols=93  Identities=17%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      .|..+..++.|..++..+.+|.+.++=.+.... ..+......|+|=.+.-+. .+++..                    
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss--------------------  163 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS--------------------  163 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC--------------------
Confidence            467788899999998888888665543332211 2233333334443333222 222210                    


Q ss_pred             CcCCCCcccccccccCCceeEEEECCCC---CEEEEEecCCCccccceEEEEEcCCCC
Q 013347          334 HLLPVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                                    .|-.+..++|+|+.   ..|..-+.|      ++||+||+....
T Consensus       164 --------------~~ltl~Qa~WHP~S~~D~hL~iL~sd------nviRiy~lS~~t  201 (741)
T KOG4460|consen  164 --------------TSLTLKQAAWHPSSILDPHLVLLTSD------NVIRIYSLSEPT  201 (741)
T ss_pred             --------------CceeeeeccccCCccCCceEEEEecC------cEEEEEecCCcc
Confidence                          01146678899976   566666667      899999987543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.26  E-value=26  Score=35.19  Aligned_cols=158  Identities=11%  Similarity=0.106  Sum_probs=78.8

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--e--ecCCCCeEEEEEecCCCeEEEEecCCcEEEEE-CCCCc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--I--RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE-TNTWT  286 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~--~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd-~~~~~  286 (444)
                      ..+..+.|+.+.. |++...+| ++.+|++.......  +  ......|..+.+..+|-.++  ..+|.+.+-+ .....
T Consensus        84 ~~lI~mgWs~~ee-LI~v~k~g-~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~  159 (829)
T KOG2280|consen   84 GELIGMGWSDDEE-LICVQKDG-TVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPK  159 (829)
T ss_pred             CCeeeecccCCce-EEEEeccc-eEEEeecchhhhcccccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCcch
Confidence            4788999987765 55667887 99999987554333  1  11234465566555663333  3345555443 33323


Q ss_pred             eecccc---CCCceeEEEECCCCCE--EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCC
Q 013347          287 SEPWSS---TSGFVTGATWDPEGRM--ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG  361 (444)
Q Consensus       287 ~~~~~~---~~~~v~~~~~sp~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  361 (444)
                      ...+..   ......|-...++++.  ++..-..............           ......-...+..+..+++||+.
T Consensus       160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-----------~~q~~~~~~~~~~~~ki~VS~n~  228 (829)
T KOG2280|consen  160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-----------RVQLHALSWPNSSVVKISVSPNR  228 (829)
T ss_pred             hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc-----------cccccccCCCCceEEEEEEcCCc
Confidence            322221   1111122222233221  1111110000001111000           01111111123468899999999


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ++|+-=...      |.|.+-+.+..+..
T Consensus       229 ~~laLyt~~------G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  229 RFLALYTET------GKIWVVSIDLSQIL  251 (829)
T ss_pred             ceEEEEecC------CcEEEEecchhhhh
Confidence            999987777      88888887765443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.21  E-value=17  Score=33.17  Aligned_cols=101  Identities=15%  Similarity=0.259  Sum_probs=63.4

Q ss_pred             CCceEEEEEccCCCeEEEEeeCCCe------EEEEEcCCC--C--------ceeeecCCC--------CeEEEEEecCCC
Q 013347          211 GEQITALSWGPDGRYLASASYESSS------FTIWDVAQG--L--------GTPIRRGFG--------GLSILKWSPTGD  266 (444)
Q Consensus       211 ~~~v~~~~~sp~~~~l~~~~~d~~~------i~iwd~~~~--~--------~~~~~~~~~--------~v~~~~~sp~~~  266 (444)
                      -+.+..+.+.+++..+++.+.++ .      +..+++...  .        ...+....+        ...++++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRG-PNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCC-CCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            36788999997666677777776 5      555554431  0        111112112        344788877888


Q ss_pred             eEEEEecC------CcEEEEECCCCce-ecc--c-------------cCCCceeEEEECCCCCEEEEEE
Q 013347          267 YFFAAKFD------GTFYLWETNTWTS-EPW--S-------------STSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       267 ~l~~~~~d------~~v~iwd~~~~~~-~~~--~-------------~~~~~v~~~~~sp~g~~l~~~~  313 (444)
                      ++++.-.+      ..|+.++.. ++. ..+  +             ..+....+++++|+|+.|+++.
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            77776666      788888876 433 111  1             2345689999999999666554

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.20  E-value=30  Score=35.86  Aligned_cols=76  Identities=13%  Similarity=-0.007  Sum_probs=53.4

Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee----c----------------CCCCeEEE
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR----R----------------GFGGLSIL  259 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~----~----------------~~~~v~~~  259 (444)
                      |.....+.-+  +.|.++....-+..++.+-.|| +|.++|-.+-+.....    .                .-..+..+
T Consensus       250 l~~~~~i~~~--~~V~si~~~~~~~~v~~~~~DG-sI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~v  326 (753)
T PF11635_consen  250 LRRLDDITLN--KRVVSITSPELDIVVAFAFSDG-SIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHV  326 (753)
T ss_pred             EEEecccccC--CeEEEEEecccCcEEEEEEcCC-eEEEEecCcchhhcccccccCCccccccccccccccccCCCCceE
Confidence            4444444443  5799999888888999999998 9999997765332211    0                01134468


Q ss_pred             EEecCCCeEEEEecCCcEE
Q 013347          260 KWSPTGDYFFAAKFDGTFY  278 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~  278 (444)
                      +|||.+.-++.-..+|.+.
T Consensus       327 afSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  327 AFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             EECcccceEEEEecCCCce
Confidence            8999998888888888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=89.04  E-value=0.59  Score=46.90  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             eEEEEEec---CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE-----------EeeCCCeEEEEecCCcE
Q 013347          102 LQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE-----------WRPNGGRSLSVGCKGGI  167 (444)
Q Consensus       102 v~~~~~sp---~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~-----------~s~~~~~ll~~~~dg~v  167 (444)
                      +.-+.|.|   +.-++.++-.++.+++.+++..  ...++ .+|...+..++           .||||..++....||.+
T Consensus       183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra--~~~l~-rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v  259 (1283)
T KOG1916|consen  183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA--LRSLF-RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV  259 (1283)
T ss_pred             cceeeecccccccceeeeccCCCceeEeeechH--HHHHH-HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence            34455554   5567777778899998877752  22333 35776666654           47888888888888888


Q ss_pred             EEEecC
Q 013347          168 CIWAPS  173 (444)
Q Consensus       168 ~iw~~~  173 (444)
                      +.|.+.
T Consensus       260 ~f~Qiy  265 (1283)
T KOG1916|consen  260 GFYQIY  265 (1283)
T ss_pred             ceeeee
Confidence            888765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.51  E-value=13  Score=35.33  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347          265 GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       265 ~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      .-++++++..|.|++||.-.... ..+++....|..+..+.+|++++++|..
T Consensus       573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            45899999999999999765444 3466778889999999999999988764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.42  E-value=23  Score=33.48  Aligned_cols=34  Identities=26%  Similarity=0.271  Sum_probs=28.0

Q ss_pred             ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          351 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       351 ~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .+.++..+|++++.|+...-      |.|.++|+.++.++
T Consensus       309 ~~~~i~~sP~~~laA~tDsl------GRV~LiD~~~~~vv  342 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSL------GRVLLIDVARGIVV  342 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCC------CcEEEEECCCChhh
Confidence            68899999999877775433      99999999987665

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.93  E-value=3.1  Score=23.85  Aligned_cols=28  Identities=32%  Similarity=0.682  Sum_probs=20.6

Q ss_pred             CceEEEEEccCCCeEEEEeeCC--CeEEEE
Q 013347          212 EQITALSWGPDGRYLASASYES--SSFTIW  239 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~--~~i~iw  239 (444)
                      ..-....|+|||+.|+.++...  +.-.||
T Consensus         9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            4678899999999999887664  355555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.72  E-value=37  Score=35.12  Aligned_cols=66  Identities=14%  Similarity=0.089  Sum_probs=41.0

Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE-------------EEEEec--CCCeEEEEec----------CCc
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS-------------ILKWSP--TGDYFFAAKF----------DGT  276 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~~~~~----------d~~  276 (444)
                      .+..++.++.|+ .+.-.|.++++........+.+.             .+.-.|  .+..+++|+.          +|.
T Consensus       259 ~~~rV~~~T~Dg-~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~  337 (764)
T TIGR03074       259 CARRIILPTSDA-RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV  337 (764)
T ss_pred             cCCEEEEecCCC-eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence            345677788887 88888888887665443332221             111112  1345555542          588


Q ss_pred             EEEEECCCCcee
Q 013347          277 FYLWETNTWTSE  288 (444)
Q Consensus       277 v~iwd~~~~~~~  288 (444)
                      |+-+|.++|+..
T Consensus       338 I~A~Da~TGkl~  349 (764)
T TIGR03074       338 IRAFDVNTGALV  349 (764)
T ss_pred             EEEEECCCCcEe
Confidence            999999999874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN02193 nitrile-specifier protein

Probab=87.71  E-value=28  Score=33.76  Aligned_cols=68  Identities=10%  Similarity=-0.006  Sum_probs=40.0

Q ss_pred             CCCeEEEEeeCC---CeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEEEecC--------------CcEEE
Q 013347          222 DGRYLASASYES---SSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD--------------GTFYL  279 (444)
Q Consensus       222 ~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d--------------~~v~i  279 (444)
                      +++.++.++.++   ..+.+||+.+.+...+...     .....++ ..-++++++.|+..              +.+.+
T Consensus       328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~  406 (470)
T PLN02193        328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA  406 (470)
T ss_pred             CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEE
Confidence            566766666542   2689999988765544321     1111222 22356667777743              25789


Q ss_pred             EECCCCceecc
Q 013347          280 WETNTWTSEPW  290 (444)
Q Consensus       280 wd~~~~~~~~~  290 (444)
                      ||+.+.+...+
T Consensus       407 ~D~~t~~W~~~  417 (470)
T PLN02193        407 LDTETLQWERL  417 (470)
T ss_pred             EEcCcCEEEEc
Confidence            99988766433

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=87.64  E-value=30  Score=33.96  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=55.7

Q ss_pred             ecCCCeEEEEecCCcEEEEECCCCce---eccccC-CCceeEEEECCCC--CEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          262 SPTGDYFFAAKFDGTFYLWETNTWTS---EPWSST-SGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       262 sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~-~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ..++..++.+.++|.+....+.....   ....+. .....++.+-.+|  -.++.+..+++.+..+...          
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~----------  288 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS----------  288 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE----------
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC----------
Confidence            34567788899999998887765331   122222 4456777777777  4444333444444444311          


Q ss_pred             CCCCcccccccccCCceeEEEECCC---C-C------EEEEEecCCCccccceEEEEEc
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDAS---G-E------RLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spd---g-~------~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                         ....+.++..-.+|.++++.+.   + .      .|++++..+.   +|.+++..-
T Consensus       289 ---~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~---~gsL~~lr~  341 (504)
T PF10433_consen  289 ---NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGK---RGSLRILRN  341 (504)
T ss_dssp             ---SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGG---G-EEEEEEE
T ss_pred             ---CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCC---CCcEEEEec
Confidence               3445556666668888887532   1 1      4555543322   278888754

...

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.15  E-value=28  Score=37.37  Aligned_cols=148  Identities=14%  Similarity=0.160  Sum_probs=84.4

Q ss_pred             eeCCCeEEEEEcCCCCcee-eecCCCCeEEEEE--------ecCCCeEEEEecCCcEEEEECC----CCceec------c
Q 013347          230 SYESSSFTIWDVAQGLGTP-IRRGFGGLSILKW--------SPTGDYFFAAKFDGTFYLWETN----TWTSEP------W  290 (444)
Q Consensus       230 ~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~--------sp~~~~l~~~~~d~~v~iwd~~----~~~~~~------~  290 (444)
                      +.|+ .+.+|+.+++.... +.+....|..+..        -|.=++++..+.--.|.++-+.    ++....      +
T Consensus        96 TiDn-~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   96 TIDN-NLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EeCC-eEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            4465 89999999854433 4344455554442        2333444444444556666432    222221      2


Q ss_pred             ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc--CCCC-------cccccccc-cCC-ceeEEEECC
Q 013347          291 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL--LPVD-------LPDIVSLT-GSQ-GIEKIAWDA  359 (444)
Q Consensus       291 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~-~~~-~v~~~~~sp  359 (444)
                      ...+..|+++....+|+.+++|.+  +.+|.+.+.....=+..+.  ...+       .+.+-.+. .+. +|..+++..
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~d--g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRD--GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecC--CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            233567899998889998776533  3566666533211000000  0000       01122233 334 899999998


Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCC
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .-+.|.+-+..      ++|++|++..
T Consensus       253 SR~IlY~lsek------~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEK------GTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccC------ceEEEEEccC
Confidence            88899998887      9999999986

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.85  E-value=20  Score=38.27  Aligned_cols=146  Identities=10%  Similarity=0.143  Sum_probs=85.6

Q ss_pred             ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE--------eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW--------RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       118 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~--------s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      +.|+.+.+|+.++++.....  .+-...|..+..        .|.=+++++.+.--.|.|+-+...........-     
T Consensus        96 TiDn~L~lWny~~~~e~~~~--d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f-----  168 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEY--DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF-----  168 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccc--cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-----
Confidence            57999999999985444333  344455666554        223356777777777777766522211110000     


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEE--EEcCCC---------------------Cc
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI--WDVAQG---------------------LG  246 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~i--wd~~~~---------------------~~  246 (444)
                                 ...-.+... +..|.|+....+|+.+++|- || .|+-  |....+                     ..
T Consensus       169 -----------~~~~~i~~d-g~~V~~I~~t~nGRIF~~G~-dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  169 -----------NTSFKISVD-GVSVNCITYTENGRIFFAGR-DG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             -----------ccceeeecC-CceEEEEEeccCCcEEEeec-CC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence                       000011111 35789999888998776654 54 3332  222222                     00


Q ss_pred             eeee-cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC
Q 013347          247 TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  284 (444)
Q Consensus       247 ~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~  284 (444)
                      ..+. .+..+|..++....-+.+.+-+..++|.+||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            1122 3456899999987767778889999999999976

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.52  E-value=3.5  Score=23.63  Aligned_cols=31  Identities=26%  Similarity=0.612  Sum_probs=19.8

Q ss_pred             ecCCCCeEEEEEecCCCeEEEEe-cC--CcEEEE
Q 013347          250 RRGFGGLSILKWSPTGDYFFAAK-FD--GTFYLW  280 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~~l~~~~-~d--~~v~iw  280 (444)
                      ......-....|+|||+.|+-++ .+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34455677899999999986544 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.27  E-value=8.9  Score=36.11  Aligned_cols=30  Identities=10%  Similarity=0.165  Sum_probs=27.3

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED  130 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~  130 (444)
                      .+.+++.+|++++.|+...=|.|.|+|+..
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~  338 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVAR  338 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            488999999999999988889999999987

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=86.24  E-value=26  Score=31.91  Aligned_cols=54  Identities=2%  Similarity=-0.146  Sum_probs=28.7

Q ss_pred             cCCCeEEEEeeCCC---eEEEEEcCCCCceeeecC---CCCe---EEE-EEecCCCeEEEEecC
Q 013347          221 PDGRYLASASYESS---SFTIWDVAQGLGTPIRRG---FGGL---SIL-KWSPTGDYFFAAKFD  274 (444)
Q Consensus       221 p~~~~l~~~~~d~~---~i~iwd~~~~~~~~~~~~---~~~v---~~~-~~sp~~~~l~~~~~d  274 (444)
                      .+++..+.|+.++.   .+.+||.++.+-..+...   ..+.   ... +...++++++.|+.+
T Consensus       170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       170 LQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             ECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            46677777776531   356888887754443321   1111   111 122356677787765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.92  E-value=25  Score=31.42  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCceeeec-------CCCCeEEEEEecCC-----CeE-EEEecCCcEEEEECCCCceecccc---------
Q 013347          235 SFTIWDVAQGLGTPIRR-------GFGGLSILKWSPTG-----DYF-FAAKFDGTFYLWETNTWTSEPWSS---------  292 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~-----~~l-~~~~~d~~v~iwd~~~~~~~~~~~---------  292 (444)
                      +|.+||+.+++..+...       ..+.+..+.+....     .++ ++=+..+.|.++|+.+++..++..         
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            67888888887654322       23567788887632     233 333344689999999877532221         


Q ss_pred             -----------CCCceeEEEECC---CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC--cccccccccC-CceeEE
Q 013347          293 -----------TSGFVTGATWDP---EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD--LPDIVSLTGS-QGIEKI  355 (444)
Q Consensus       293 -----------~~~~v~~~~~sp---~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~v~~~  355 (444)
                                 ....+..++.+|   ++++|+...-.+..++.+........   ......  ...++.+-.. .....+
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~~~~~~v~~lG~k~~~s~g~  191 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQALASQVQDLGDKGSQSDGM  191 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH-HHHT-EEEEE---SECEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccccccccceeccccCCCCceE
Confidence                       112366677765   77888877655556666654321100   000000  0111111111 145678


Q ss_pred             EECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          356 AWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       356 ~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      +++++|.++++--..      +.|..|+..+
T Consensus       192 ~~D~~G~ly~~~~~~------~aI~~w~~~~  216 (287)
T PF03022_consen  192 AIDPNGNLYFTDVEQ------NAIGCWDPDG  216 (287)
T ss_dssp             EEETTTEEEEEECCC------TEEEEEETTT
T ss_pred             EECCCCcEEEecCCC------CeEEEEeCCC
Confidence            889999888777766      8999999886

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=85.62  E-value=29  Score=31.77  Aligned_cols=157  Identities=23%  Similarity=0.362  Sum_probs=85.7

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCc------EEEEecCCC-CCcceeeccccccccccccCCCCceEEEEEeeccCCCceE
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGG------ICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  215 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~------v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  215 (444)
                      -+.+..+.+.++++.+++.+.+|.      +..+++... .....+......   .+. ..++     ..+... ....-
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~L~-~~~G-----~~~~~~-~~D~E   88 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMI---PLR-DPDG-----QPFPKN-GLDPE   88 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccce---ecc-CCCC-----CcCCcC-CCChh
Confidence            456788999977788888888877      655555531 111111100000   000 0000     001000 12445


Q ss_pred             EEEEccCCCeEEEEeeC------CCeEEEEEcCCCCcee-e---------------ecCCCCeEEEEEecCCCeEEEEec
Q 013347          216 ALSWGPDGRYLASASYE------SSSFTIWDVAQGLGTP-I---------------RRGFGGLSILKWSPTGDYFFAAKF  273 (444)
Q Consensus       216 ~~~~sp~~~~l~~~~~d------~~~i~iwd~~~~~~~~-~---------------~~~~~~v~~~~~sp~~~~l~~~~~  273 (444)
                      ++++.++|.++++.-.+      . .|..++.. ++... +               ...+....+++++|+|+.|+++.+
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p-~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPP-RIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCC-EEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            78887777776665444      4 78888866 33221 1               112456889999999996665533


Q ss_pred             -----CC--c-------EEE--EECCCCc-e-e----cccc-----CCCceeEEEECCCCCEEEE
Q 013347          274 -----DG--T-------FYL--WETNTWT-S-E----PWSS-----TSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       274 -----d~--~-------v~i--wd~~~~~-~-~----~~~~-----~~~~v~~~~~sp~g~~l~~  311 (444)
                           |+  .       +++  ||..+.. . .    .+..     ....+..+.+-+++++++.
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 22  1       444  4554422 1 1    1222     4567889999999997775

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.97  E-value=20  Score=36.16  Aligned_cols=95  Identities=16%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             ceEEEEEccCCCeEEEEeeCCC----eEEEEEcCC---CCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347          213 QITALSWGPDGRYLASASYESS----SFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  285 (444)
                      .-..+.|-|+|..+++-..||.    .|..+.-..   |+.....+....+..++|+-....++. ...+.+++|-..+-
T Consensus       248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNy  326 (1243)
T COG5290         248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNY  326 (1243)
T ss_pred             chhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccce
Confidence            3456899999999999875541    344444221   111111222345666778765554443 34567999976654


Q ss_pred             ce-eccccCCCceeEEEECCCCCE
Q 013347          286 TS-EPWSSTSGFVTGATWDPEGRM  308 (444)
Q Consensus       286 ~~-~~~~~~~~~v~~~~~sp~g~~  308 (444)
                      .. .+..-.-..+.-+.|+|....
T Consensus       327 hWYLK~e~~ip~~s~vkwhpe~~n  350 (1243)
T COG5290         327 HWYLKVERQIPGISYVKWHPEEKN  350 (1243)
T ss_pred             EEEEEEeecCCCcceeeeccccCc
Confidence            33 112222334556788886543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=84.43  E-value=44  Score=32.96  Aligned_cols=61  Identities=8%  Similarity=0.027  Sum_probs=37.2

Q ss_pred             CeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----CeEE-EEEecCCCeEEEEe------cCCcEEEEECCCCce
Q 013347          224 RYLASASYESSSFTIWDVAQGLGTPIRRGFG-----GLSI-LKWSPTGDYFFAAK------FDGTFYLWETNTWTS  287 (444)
Q Consensus       224 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----~v~~-~~~sp~~~~l~~~~------~d~~v~iwd~~~~~~  287 (444)
                      ..++.++.++ .+.-.|.++++.........     .+.+ .... ++ .++.+.      .+|.|.-+|.++++.
T Consensus       121 ~~v~v~t~dg-~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       121 GKVFFGTLDA-RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             CEEEEEcCCC-EEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCce
Confidence            4566677787 89999999987765333210     1111 1111 44 444443      268899999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=84.42  E-value=31  Score=35.91  Aligned_cols=174  Identities=13%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-cCCCceeEEEEC-------CCCCEEEEEEcCCceEEEE
Q 013347          251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWD-------PEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~s-------p~g~~l~~~~~~~~~~~~~  322 (444)
                      +..+.+..++.-.....-.....+..+++--+.......+. ....+|..|.|.       +..++|++-......+...
T Consensus        35 Gesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p  114 (765)
T PF10214_consen   35 GESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRP  114 (765)
T ss_pred             CCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEc


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  397 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~  397 (444)
                      .+.................++.++..+.    +..+++|+| +.+.||+....      |...||++..++.........
T Consensus       115 ~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~------G~Wsvw~i~~~~~~~~~~~~~  188 (765)
T PF10214_consen  115 EYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEK------GNWSVWDIKGRPKRKSSNLRL  188 (765)
T ss_pred             ccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEecc------CcEEEEEeccccccCCcceee


Q ss_pred             eeCCCCCC------c----ceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          398 IRGPGDNP------K----PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       398 ~~~~~~~i------~----~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      ...+.+.|      .    .+.|.++-..     |.|| +.-.+..|++
T Consensus       189 ~~~~~gsi~~d~~e~s~w~rI~W~~~~~~-----lLv~-~r~~l~~~d~  231 (765)
T PF10214_consen  189 SRNISGSIIFDPEELSNWKRILWVSDSNR-----LLVC-NRSKLMLIDF  231 (765)
T ss_pred             ccCCCccccCCCcccCcceeeEecCCCCE-----EEEE-cCCceEEEEC

These proteins are found in fungi.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.40  E-value=14  Score=30.08  Aligned_cols=31  Identities=19%  Similarity=0.506  Sum_probs=24.0

Q ss_pred             CceEEEEEccCC------CeEEEEeeCCCeEEEEEcCC
Q 013347          212 EQITALSWGPDG------RYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       212 ~~v~~~~~sp~~------~~l~~~~~d~~~i~iwd~~~  243 (444)
                      ..+..++|||.|      ..|++.+.++ .|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~-~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNG-RLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCC-eEEEEecCC
Confidence            478999999944      3577777887 999998654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.39  E-value=34  Score=32.78  Aligned_cols=60  Identities=13%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCce-eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      ...+++.++..| -|++||--..... .+.+....|..+..+.+|+++++.+. ..+.+-|++
T Consensus       572 esGyIa~as~kG-DirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKG-DIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCC-ceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            445899999987 9999996544333 35566788999999999999877764 567777775

>PLN02153 epithiospecifier protein

Probab=84.16  E-value=34  Score=31.45  Aligned_cols=69  Identities=6%  Similarity=0.041  Sum_probs=37.2

Q ss_pred             cCCCeEEEEeeCC----------CeEEEEEcCCCCceeeecCC----CC-eEEEEEecCCCeEEEEecC-----------
Q 013347          221 PDGRYLASASYES----------SSFTIWDVAQGLGTPIRRGF----GG-LSILKWSPTGDYFFAAKFD-----------  274 (444)
Q Consensus       221 p~~~~l~~~~~d~----------~~i~iwd~~~~~~~~~~~~~----~~-v~~~~~sp~~~~l~~~~~d-----------  274 (444)
                      -+++.++.|+.+.          ..+.+||.++.+-..+....    .. -.+++. -++++++.++.+           
T Consensus       136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~  214 (341)
T PLN02153        136 DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDY  214 (341)
T ss_pred             ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccce
Confidence            3566667766431          14778898876544332211    11 112222 256665655421           


Q ss_pred             --CcEEEEECCCCceecc
Q 013347          275 --GTFYLWETNTWTSEPW  290 (444)
Q Consensus       275 --~~v~iwd~~~~~~~~~  290 (444)
                        ..+.+||+.+.+...+
T Consensus       215 ~~~~v~~yd~~~~~W~~~  232 (341)
T PLN02153        215 ESNAVQFFDPASGKWTEV  232 (341)
T ss_pred             ecCceEEEEcCCCcEEec
Confidence              4688999988776443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.11  E-value=39  Score=32.03  Aligned_cols=157  Identities=14%  Similarity=0.132  Sum_probs=93.8

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEee----CCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~----~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      +...|++||.+|.++||+....+..  -..+...-..+|..+..-+    .....+++-.-..+.||.+......  ...
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~--~~~  113 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT--VEH  113 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC--ccc
Confidence            3468999999999999999764312  2333345567888887642    2345667777788999988422111  000


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----C-CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----D-GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                                   +..+.+...+..+-......+++-|    . ...+++-+.|| .+.+|+-+.-.........--...
T Consensus       114 -------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG-~L~~feqe~~~f~~~lp~~llPgP  179 (418)
T PF14727_consen  114 -------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDG-SLSFFEQESFAFSRFLPDFLLPGP  179 (418)
T ss_pred             -------------CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCc-eEEEEeCCcEEEEEEcCCCCCCcC
Confidence                         1122222222222223334444433    2 35677788998 999999765433333332222234


Q ss_pred             EEEecCCCeEEEEecCCcEEEEEC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWET  282 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~  282 (444)
                      +++.+....|++++.+..+.-|..
T Consensus       180 l~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  180 LCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEeecCCEEEEecCceeEEEecH
Confidence            678888888999988888888864

>PRK13613 lipoprotein LpqB; Provisional

Probab=83.87  E-value=50  Score=33.09  Aligned_cols=148  Identities=14%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc----eeeecCCCCeEEEEEecCCCeEEEEec--CC--cEEEEECCC
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPIRRGFGGLSILKWSPTGDYFFAAKF--DG--TFYLWETNT  284 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~--~v~iwd~~~  284 (444)
                      .+.+++.++++..++....++..+.+..+..+..    ....-....+....|.+++ .+-+...  ++  .+++..- +
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~  441 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D  441 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence            6788999999999888877664666665533322    1111113456677787777 4444322  22  2555543 3


Q ss_pred             Cceecc--ccCC-CceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEEC
Q 013347          285 WTSEPW--SSTS-GFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWD  358 (444)
Q Consensus       285 ~~~~~~--~~~~-~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s  358 (444)
                      ++...+  .... ..|..+..|+||-.++.-..  +...+++-.+-...   ++.   ........+. ....+.+++|.
T Consensus       442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~---~G~---~~l~~~~~l~~~l~~v~~~~W~  515 (599)
T PRK13613        442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDA---KAV---VSVEEFRSLAPELEDVTDMSWA  515 (599)
T ss_pred             CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCC---CCc---EEeeccEEeccCCCccceeEEc
Confidence            443211  1222 37999999999988776433  22333333332211   010   0111111221 22268899999


Q ss_pred             CCCCEEEEEe
Q 013347          359 ASGERLAVSY  368 (444)
Q Consensus       359 pdg~~l~~~~  368 (444)
                      .++.+++.+.
T Consensus       516 ~~~sL~Vlg~  525 (599)
T PRK13613        516 GDSQLVVLGR  525 (599)
T ss_pred             CCCEEEEEec
Confidence            9998777553

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.83  E-value=25  Score=31.22  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             eEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEEEe------cCCcEEEEECCCCceecccc-----CCCceeEEEE
Q 013347          235 SFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFAAK------FDGTFYLWETNTWTSEPWSS-----TSGFVTGATW  302 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~  302 (444)
                      .|++||..+.+-...- .-.+.|.++.|..+.+.++.|.      ....+..||..+.....+..     -.+++..+.+
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~   96 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF   96 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence            6999998877655433 2457899999986666666664      34578899998877655444     2467877777


Q ss_pred             C
Q 013347          303 D  303 (444)
Q Consensus       303 s  303 (444)
                      .
T Consensus        97 ~   97 (281)
T PF12768_consen   97 I   97 (281)
T ss_pred             e
Confidence            4

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=83.44  E-value=36  Score=34.42  Aligned_cols=167  Identities=16%  Similarity=0.222  Sum_probs=89.9

Q ss_pred             ccceEEEEEecCCCeEEEEECCCe--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ...+..+.|+|+|..++..+.++.  ..+|.+...+     ....+...+....|++++..++....++..+.       
T Consensus        59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g-----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~-------  126 (620)
T COG1506          59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG-----LITKTAFGVSDARWSPDGDRIAFLTAEGASKR-------  126 (620)
T ss_pred             CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC-----ceeeeecccccceeCCCCCeEEEEeccccccc-------
Confidence            446788999999999998773332  4555554322     12345667888999999887776111110000       


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL  256 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v  256 (444)
                            .+              .        .+....=..+.|...+      .... .+.+.|..+ ...........+
T Consensus       127 ------~~--------------~--------~~~~~~~~~~~~~~~g------~~~~-~l~~~d~~~-~~~~~~~~~~~~  170 (620)
T COG1506         127 ------DG--------------G--------DHLFVDRLPVWFDGRG------GERS-DLYVVDIES-KLIKLGLGNLDV  170 (620)
T ss_pred             ------CC--------------c--------eeeeecccceeecCCC------Cccc-ceEEEccCc-ccccccCCCCce
Confidence                  00              0        0000000011122222      2222 455555554 333344455667


Q ss_pred             EEEEEecCCCeEEEEecCC-------cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE
Q 013347          257 SILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  313 (444)
                      ....++++++.++....+.       ...++...++....+......+..+.|.++|+.++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         171 VSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             eeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCCCceeeeeeeCCCCCeeEEec
Confidence            7777777777665544332       23333334555556666666688888999988665543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=83.15  E-value=11  Score=26.62  Aligned_cols=41  Identities=15%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe
Q 013347          231 YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK  272 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  272 (444)
                      ..| .+..||..+++...+...-.....+++++|+++++.+-
T Consensus        35 ~~G-Rll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   35 PTG-RLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             --E-EEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             CCc-CEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            344 89999999988776666556788999999999876553

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.11  E-value=19  Score=27.68  Aligned_cols=94  Identities=7%  Similarity=0.042  Sum_probs=60.1

Q ss_pred             EEEccCCCeEEEEeeCCCeEEEEEcCCC--------CceeeecCCCCeEEEEEec-----CCCeEEEEecCCcEEEEECC
Q 013347          217 LSWGPDGRYLASASYESSSFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-----TGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~~--------~~~~~~~~~~~v~~~~~sp-----~~~~l~~~~~d~~v~iwd~~  283 (444)
                      -.|......|++++.-+ +|.|++....        ..+.+......|++++--+     +...|+.|+ ...+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~g-KV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGG-KVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCC-EEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            34555555677777776 9999987643        2334555667888886544     244566666 5679999999


Q ss_pred             CCceeccccCCCceeEEEECC----CCCEEEEE
Q 013347          284 TWTSEPWSSTSGFVTGATWDP----EGRMILLA  312 (444)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~sp----~g~~l~~~  312 (444)
                      .........-...++++.+-.    ...+++++
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG  114 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG  114 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEEC
Confidence            877655555556677777632    23455544

>PHA02790 Kelch-like protein; Provisional

Probab=83.03  E-value=41  Score=32.78  Aligned_cols=61  Identities=11%  Similarity=0.072  Sum_probs=35.2

Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC---CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCce
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTS  287 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~  287 (444)
                      -+++..+.|   | .+.+||.++++-..+....   ... +++. -+++..+.|+.+     ..+..||..+++.
T Consensus       406 ~~~~IYv~G---G-~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        406 FGRRLFLVG---R-NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             ECCEEEEEC---C-ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            356666655   3 5778998877654433221   122 2222 267777777754     3577788777654

>PRK13615 lipoprotein LpqB; Provisional

Probab=81.96  E-value=56  Score=32.32  Aligned_cols=156  Identities=12%  Similarity=0.029  Sum_probs=89.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      ...+++.++++..+|....++.+.++....  ......   ....++.-+|.+++ .+-++......++......+....
T Consensus       335 ~~~s~avS~dg~~~A~v~~~~~l~vg~~~~--~~~~~~---~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~  408 (557)
T PRK13615        335 QADAATLSADGRQAAVRNASGVWSVGDGDR--DAVLLD---TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP  408 (557)
T ss_pred             ccccceEcCCCceEEEEcCCceEEEecCCC--cceeec---cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE
Confidence            347899999999999887777777775542  222222   13346677788875 444443333344444432222211


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CC-CeEEEEEcCC--CCceee-------
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ES-SSFTIWDVAQ--GLGTPI-------  249 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-~~i~iwd~~~--~~~~~~-------  249 (444)
                      +.                       ........|..+..|+||-+++.-.. ++ ++|.+--+..  +....+       
T Consensus       409 v~-----------------------v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l  465 (557)
T PRK13615        409 VA-----------------------VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLEL  465 (557)
T ss_pred             ee-----------------------ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEc
Confidence            11                       11112368999999999998876543 21 2566543322  211122       


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCC
Q 013347          250 RRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTW  285 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~  285 (444)
                      ......+.++.|..++.+.+.+.   .+..+++..+...
T Consensus       466 ~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~  504 (557)
T PRK13615        466 LASPGTPLDATWVDELDVATLTLAPDGERQVELHQVGGP  504 (557)
T ss_pred             ccCcCcceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence            11234789999999888765552   3356777777643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=81.83  E-value=35  Score=29.89  Aligned_cols=208  Identities=13%  Similarity=0.081  Sum_probs=120.0

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC---------cEEEE
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---------GICIW  170 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg---------~v~iw  170 (444)
                      ..-+.++-+|||..-.++...+.|--.|..+ ++... ...+.......+..-|||...++=+...         .+.-|
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~-ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVET-YPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCC-CceEE-EecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEe
Confidence            3467788999998888888777777777776 33333 3346666677788888877666533321         22222


Q ss_pred             ecCCCCCcceeeccccccccccccC----CCCc----eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347          171 APSYPGNAASVRSGAASFLGALSRG----PGTR----WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~  242 (444)
                      -+........+.+..+...+.+-+-    -.++    -..+..+..........++..|||..-++.-.++ .|...|..
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn-aiaridp~  218 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN-AIARIDPF  218 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc-ceEEcccc
Confidence            2221111111122222222211100    0011    1133445555556778888999998776655555 88888877


Q ss_pred             CCCceeeecC---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEE
Q 013347          243 QGLGTPIRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       243 ~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~  310 (444)
                      ++....+...   +...+.+--+|.|+.-++....+.+..||......+  .+.+.+..-.++.....++.-+
T Consensus       219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~  291 (353)
T COG4257         219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL  291 (353)
T ss_pred             cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence            7643333221   234455656778888888888889999998776653  3445555566666666665444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=81.69  E-value=38  Score=30.21  Aligned_cols=214  Identities=18%  Similarity=0.200  Sum_probs=103.3

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcC------CCCcee--eec-----CCCCeEEEEEecCCC------------
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVA------QGLGTP--IRR-----GFGGLSILKWSPTGD------------  266 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~------~~~~~~--~~~-----~~~~v~~~~~sp~~~------------  266 (444)
                      .....++++|.+.+-++....+ ...+||..      ..+.+.  +..     .....+.+.|+....            
T Consensus        23 ~N~WGia~~p~~~~WVadngT~-~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTG-TATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cccceeEecCCCCEEEecCCcc-eEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            3457899999887666655555 99999986      111122  211     124567777774332            


Q ss_pred             eEEEEecCCcEEEEECCCCce------eccc-cCCCc-eeEEEECCC--CCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          267 YFFAAKFDGTFYLWETNTWTS------EPWS-STSGF-VTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       267 ~l~~~~~d~~v~iwd~~~~~~------~~~~-~~~~~-v~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .++.+++||+|.-|...-...      ..+. ...+. -..+++...  +.+|+.+.-..+++.+++-.=.+..+.....
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            256778899999998643322      1111 11122 345555533  5566655333333333321100000000000


Q ss_pred             CCCcc------cccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          337 PVDLP------DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       337 ~~~~~------~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                      +...+      .++.+.+.-.|+-..-.++++.=+.+..      -|.|-+||+...-+.+.    .-.+.-...+.++.
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G------~G~VdvFd~~G~l~~r~----as~g~LNaPWG~a~  251 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAG------LGYVNVFTLNGQLLRRV----ASSGRLNAPWGLAI  251 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCC------cceEEEEcCCCcEEEEe----ccCCcccCCceeee
Confidence            00000      0000000001111111222211111111      17899999875322211    11244556788888


Q ss_pred             eeC--CCCCCCceEEEEeccceeeeeeee
Q 013347          411 SFH--DKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       411 spd--g~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .|-  |++ .+.+|.=..-||+|..|+..
T Consensus       252 APa~FG~~-sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       252 APESFGSL-SGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             ChhhhCCC-CCCeEEeecCCceeEEecCC
Confidence            774  333 55666556789999999865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.40  E-value=49  Score=31.23  Aligned_cols=141  Identities=13%  Similarity=0.165  Sum_probs=75.1

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----  287 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----  287 (444)
                      ....+..+++|.+++.+..-. .++-||-....-.. .......+..+.|.+++..++++ .+|.+. +....++.    
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~-~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGN-FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCcc-EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            345566778888777655432 33344432211122 22335678899999999877666 456543 34444331    


Q ss_pred             --eccc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCC
Q 013347          288 --EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGE  362 (444)
Q Consensus       288 --~~~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~  362 (444)
                        ....  .....+.++.|.+++..++++..  +.+..-.  +.     +.    +......-..- ..++.+.|.++++
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~--G~v~~s~--D~-----G~----tW~~~~~~~~~~~~ly~v~f~~~~~  383 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGS--GILLRST--DG-----GK----SWKRDKGADNIAANLYSVKFFDDKK  383 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCcEEEEECC--CcEEEeC--CC-----Cc----ceeEccccCCCCcceeEEEEcCCCc
Confidence              1111  12235889999999888776633  2222211  10     00    11111110111 1578999988888


Q ss_pred             EEEEEec
Q 013347          363 RLAVSYK  369 (444)
Q Consensus       363 ~l~~~~~  369 (444)
                      .+++|..
T Consensus       384 g~~~G~~  390 (398)
T PLN00033        384 GFVLGND  390 (398)
T ss_pred             eEEEeCC
Confidence            7877643

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=81.13  E-value=40  Score=30.14  Aligned_cols=200  Identities=14%  Similarity=0.136  Sum_probs=105.8

Q ss_pred             eEEEEEecCCCeEEE--EE--C--------CCeEEEEEccCCCCceeEEecC-----CCCCeEEEEEeeCCC----eEEE
Q 013347          102 LQGVSWHQHKHIVAF--IS--G--------STQVIVRDYEDSGKDACILTSD-----SQRDVKVLEWRPNGG----RSLS  160 (444)
Q Consensus       102 v~~~~~sp~g~~la~--~~--~--------dg~v~iw~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~----~ll~  160 (444)
                      |..+....++++-+.  |.  .        .-.|.+||+.+ .+....+...     ..+.+..+.+.....    .++.
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence            667777777776554  21  1        13688889988 4444333211     245677788876322    3444


Q ss_pred             Eec--CCcEEEEecCCCCCcceeeccccccccc-cccCCCCceEEEEEeeccCCCceEEEEEcc---CCCeEEEEeeCCC
Q 013347          161 VGC--KGGICIWAPSYPGNAASVRSGAASFLGA-LSRGPGTRWTLVDFLRSQNGEQITALSWGP---DGRYLASASYESS  234 (444)
Q Consensus       161 ~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~  234 (444)
                      .+.  .+.|.++|+.+++. ..+....+..... ....-.+     ..+...  ..+..++.+|   ++++|+.....+ 
T Consensus        82 ItD~~~~glIV~dl~~~~s-~Rv~~~~~~~~p~~~~~~i~g-----~~~~~~--dg~~gial~~~~~d~r~LYf~~lss-  152 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKS-WRVLHNSFSPDPDAGPFTIGG-----ESFQWP--DGIFGIALSPISPDGRWLYFHPLSS-  152 (287)
T ss_dssp             EEETTTCEEEEEETTTTEE-EEEETCGCTTS-SSEEEEETT-----EEEEET--TSEEEEEE-TTSTTS-EEEEEETT--
T ss_pred             EeCCCcCcEEEEEccCCcE-EEEecCCcceeccccceeccC-----ceEecC--CCccccccCCCCCCccEEEEEeCCC-
Confidence            443  36899999984432 2222222111110 0000000     012222  3478888876   888888887664 


Q ss_pred             eEEEEEcCCC-----C---------ceeeecCC-CCeEEEEEecCCCeEEEEecCCcEEEEECCCC----ceeccc--cC
Q 013347          235 SFTIWDVAQG-----L---------GTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW----TSEPWS--ST  293 (444)
Q Consensus       235 ~i~iwd~~~~-----~---------~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~----~~~~~~--~~  293 (444)
                       -++|.+.+.     .         .....+.+ .....++++++|.++++--..+.|..|+..+.    +...+.  ..
T Consensus       153 -~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~  231 (287)
T PF03022_consen  153 -RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPR  231 (287)
T ss_dssp             -SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC
T ss_pred             -CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCc
Confidence             445544322     1         11222222 35667889999998888888999999999872    222222  11


Q ss_pred             -CCceeEEEECC--CCCEEEEE
Q 013347          294 -SGFVTGATWDP--EGRMILLA  312 (444)
Q Consensus       294 -~~~v~~~~~sp--~g~~l~~~  312 (444)
                       -..+.++.+.+  +|.+.+.+
T Consensus       232 ~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  232 TLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             -GSSEEEEEE-T--TS-EEEEE
T ss_pred             eeeccceeeeccccCceEEEEE
Confidence             34678888888  66655543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=80.99  E-value=17  Score=37.60  Aligned_cols=85  Identities=14%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             EEEEeeCCCeEEEEEcCCCCceee-ecCCCCeEEEEEecCCCeEEE-EecCC-----cEEEEECCCCce--eccccCCCc
Q 013347          226 LASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFA-AKFDG-----TFYLWETNTWTS--EPWSSTSGF  296 (444)
Q Consensus       226 l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~-~~~d~-----~v~iwd~~~~~~--~~~~~~~~~  296 (444)
                      |+......+.|.+-|........+ ..+...+.+.+|||||++|+- .+..+     .|++-|+++...  .++......
T Consensus       321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aa  400 (912)
T TIGR02171       321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAA  400 (912)
T ss_pred             EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccc
Confidence            444443322788888887777766 777889999999999999976 44443     588888876543  445445566


Q ss_pred             eeEEEECCCCCEEE
Q 013347          297 VTGATWDPEGRMIL  310 (444)
Q Consensus       297 v~~~~~sp~g~~l~  310 (444)
                      |-.-....+|..++
T Consensus       401 iprwrv~e~gdt~i  414 (912)
T TIGR02171       401 IPRWRVLENGDTVI  414 (912)
T ss_pred             ccceEecCCCCeEE
Confidence            66666677776544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=80.52  E-value=42  Score=29.96  Aligned_cols=199  Identities=13%  Similarity=0.139  Sum_probs=107.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCC-----CCc-eeEEec----CCCCCeEEEEEeeCCC------------eEE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS-----GKD-ACILTS----DSQRDVKVLEWRPNGG------------RSL  159 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~-----~~~-~~~~~~----~~~~~v~~l~~s~~~~------------~ll  159 (444)
                      -+.++++|.+.+-++....+...+||.+..     .+. ...+..    ......+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            578999999998888888899999999721     111 222210    1234677888874322            367


Q ss_pred             EEecCCcEEEEecCCCCC---cceeeccccccccccccCCCCceEEEEEeeccCCCce-EEEEEc--cCCCeEEEEeeCC
Q 013347          160 SVGCKGGICIWAPSYPGN---AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI-TALSWG--PDGRYLASASYES  233 (444)
Q Consensus       160 ~~~~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s--p~~~~l~~~~~d~  233 (444)
                      .++.||+|.-|.-.....   ...+                       .+.......| ..+++.  ..+.+|+.+....
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~-----------------------~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~  161 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEI-----------------------VVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ  161 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEE-----------------------EEccCCCcceeeeeEEeecCCCceEEEeccCC
Confidence            778889999998542221   1101                       0110001122 234443  3467777776655


Q ss_pred             CeEEEEEcCCCCcee--------eecC--CCCe---------EEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--c
Q 013347          234 SSFTIWDVAQGLGTP--------IRRG--FGGL---------SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S  292 (444)
Q Consensus       234 ~~i~iwd~~~~~~~~--------~~~~--~~~v---------~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~  292 (444)
                      ++|.+||-.-.+...        +...  .-.|         +-..-.++.+.=+.|..-|.|-+||+...-.+++.  +
T Consensus       162 g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g  241 (336)
T TIGR03118       162 GRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSG  241 (336)
T ss_pred             CceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCC
Confidence            599999854332110        0000  0011         11111222222233344578999998865555443  3


Q ss_pred             CCCceeEEEECC------CCCEEEEEEcCCceEEEEEe
Q 013347          293 TSGFVTGATWDP------EGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       293 ~~~~v~~~~~sp------~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .-...+.++..|      .|.+|+ +.-.+++|..++.
T Consensus       242 ~LNaPWG~a~APa~FG~~sg~lLV-GNFGDG~InaFD~  278 (336)
T TIGR03118       242 RLNAPWGLAIAPESFGSLSGALLV-GNFGDGTINAYDP  278 (336)
T ss_pred             cccCCceeeeChhhhCCCCCCeEE-eecCCceeEEecC
Confidence            334557777755      344444 6666777777774

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	444
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-04
2h9l_A	329	Wdr5delta23 Length = 329		2e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 322 I 322
           I
Sbjct: 274 I 274

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 148 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 207 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Query: 322 I 322
           I
Sbjct: 267 I 267

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 322 I 322
           I
Sbjct: 274 I 274

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 322 I 322
           I
Sbjct: 271 I 271

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 233 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Query: 322 I 322
           I
Sbjct: 293 I 293

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 322 I 322
           I
Sbjct: 271 I 271

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 210 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 267
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 268 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 317
             AA  D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 318 TLGSI 322
               I
Sbjct: 273 QTKEI 277

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 210 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 267
           + + ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 268 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 317
             AA  D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 318 TLGSI 322
               I
Sbjct: 273 QTKEI 277

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 228 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Query: 322 I 322
           I
Sbjct: 288 I 288

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 212 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Query: 322 I 322
           I
Sbjct: 272 I 272

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 151 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 210 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Query: 322 I 322
           I
Sbjct: 270 I 270

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 216 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Query: 322 I 322
           I
Sbjct: 276 I 276

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 322 I 322
           I
Sbjct: 274 I 274

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 235 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Query: 322 I 322
           I
Sbjct: 295 I 295

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 272 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 321
             D T  LW+        T+T   +E +   + F VTG  W   G    L +  +L    
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Query: 322 I 322
           I
Sbjct: 277 I 277

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 271
           ++A+ +  DG  + S+SY+     IWD A G  L T I      +S +K+SP G Y  AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 272 KFDGTFYLWE 281
             D T  LW+
Sbjct: 214 TLDNTLKLWD 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.67
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.59
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.51
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.48
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.37
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.32
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.24
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.06
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.04
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.02
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.96
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.93
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.92
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.85
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.83
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.82
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.78
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.77
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.74
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.72
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.69
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.66
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.65
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.64
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.61
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.6
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.59
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.57
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.57
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.56
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.54
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.49
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.48
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.46
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.46
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.42
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.41
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.4
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.4
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.37
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.35
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.29
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.29
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.14
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.11
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.08
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.02
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.0
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.99
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.94
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.91
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.86
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.86
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.85
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.79
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.7
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.58
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.57
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.54
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.35
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.98
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.84
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.6
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.59
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.49
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.3
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.74
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.41
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.3
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.41
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.27
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.62
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.31
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.99
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	92.98
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.77
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.65
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.57
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	91.44
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.73
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.56
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.72
3ott_A	758	Two-component system sensor histidine kinase; beta	87.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	87.11
3ott_A	758	Two-component system sensor histidine kinase; beta	86.29

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-42  Score=315.64  Aligned_cols=279  Identities=14%  Similarity=0.162  Sum_probs=234.6

Q ss_pred             eEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          102 LQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       102 v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      |++++|+|+    +++|++|+.|++|+||++............+|...|.+++|++++..+++++.|++|++||+...  
T Consensus        35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--  112 (321)
T 3ow8_A           35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--  112 (321)
T ss_dssp             EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--
T ss_pred             EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--
Confidence            999999985    67899999999999999986322222234699999999999999888889999999999999833  


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                             .....+..+. ..+.+++|+|++++|++++.++ .|++||+++++... +..+...+
T Consensus       113 -----------------------~~~~~~~~~~-~~~~~~~~spdg~~l~~g~~dg-~v~i~~~~~~~~~~~~~~~~~~v  167 (321)
T 3ow8_A          113 -----------------------KQIKSIDAGP-VDAWTLAFSPDSQYLATGTHVG-KVNIFGVESGKKEYSLDTRGKFI  167 (321)
T ss_dssp             -----------------------EEEEEEECCT-TCCCCEEECTTSSEEEEECTTS-EEEEEETTTCSEEEEEECSSSCE
T ss_pred             -----------------------CEEEEEeCCC-ccEEEEEECCCCCEEEEEcCCC-cEEEEEcCCCceeEEecCCCceE
Confidence                                   2344455554 6889999999999999999998 99999999887665 55667889


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .+++|+|++++|++++.|+.|++||+++++. ..+.+|...|++++|+|++++|+++ +.++.+..|++.          
T Consensus       168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s~dg~i~iwd~~----------  236 (321)
T 3ow8_A          168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA-SDDGYIKIYDVQ----------  236 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEE-CTTSCEEEEETT----------
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEE-cCCCeEEEEECC----------
Confidence            9999999999999999999999999999887 5577899999999999999998866 445677777653          


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                         ....+..+.+|. .|.+++|+|++++|++++.|      ++|++||+.+++.+     ..+.+|...|.+++|+|+|
T Consensus       237 ---~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~~g  302 (321)
T 3ow8_A          237 ---HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD------KSVKVWDVGTRTCV-----HTFFDHQDQVWGVKYNGNG  302 (321)
T ss_dssp             ---TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTS
T ss_pred             ---CcceeEEEcCCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCEEE-----EEEcCCCCcEEEEEECCCC
Confidence               234556778888 89999999999999999998      99999999987654     5678899999999999998


Q ss_pred             CCCCCceEEEEeccceeeeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ++     |+.+-.||.|.+|+..
T Consensus       303 ~~-----l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          303 SK-----IVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SE-----EEEEETTCCEEEEECC
T ss_pred             CE-----EEEEeCCCeEEEEeCC
Confidence            76     7778899999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-42  Score=325.64  Aligned_cols=277  Identities=14%  Similarity=0.229  Sum_probs=240.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|++++|+|++++|++|+.||+|+|||+.+ +.....+ .+|.+.|++++|+|++..+++++.|++|++||+...     
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-~~~~~~l-~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-----  182 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-----  182 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-----
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEE-eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----
Confidence            599999999999999999999999999997 5555555 589999999999999889999999999999999732     


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                          .+...+.+|. ..|.+++|+|++++|++++.|+ +|++||++++.+.. +..|...|.++
T Consensus       183 --------------------~~~~~~~~h~-~~V~~v~~~p~~~~l~s~s~D~-~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          183 --------------------ECIRTMHGHD-HNVSSVSIMPNGDHIVSASRDK-TIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             --------------------CEEECCCCCS-SCEEEEEECSSSSEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             --------------------ceeEEEcCCC-CCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCcEEEEEeCCCccEEEE
Confidence                                2455677785 8999999999999999999998 99999999988765 56788999999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCC--------------------CCEEEEEEcCCce
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE--------------------GRMILLAFAGSLT  318 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~--------------------g~~l~~~~~~~~~  318 (444)
                      +|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|+                    +.+++++ +.++.
T Consensus       241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-s~D~~  319 (410)
T 1vyh_C          241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRDKT  319 (410)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-ETTSE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE-eCCCe
Confidence            9999999999999999999999999877 457789999999999996                    5567765 44566


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  397 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~  397 (444)
                      +..|++.             ....+.++.+|. .|.+++|+|+|++|++++.|      ++|++||+.+++..     ..
T Consensus       320 i~iwd~~-------------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~i~vwd~~~~~~~-----~~  375 (410)
T 1vyh_C          320 IKMWDVS-------------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD------KTLRVWDYKNKRCM-----KT  375 (410)
T ss_dssp             EEEEETT-------------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETT------TEEEEECCTTSCCC-----EE
T ss_pred             EEEEECC-------------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceE-----EE
Confidence            7766653             345677788888 89999999999999999998      99999999887654     56


Q ss_pred             eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          398 IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       398 ~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +.+|...|++++|+|++++     ++.|..||.|.+|++
T Consensus       376 ~~~h~~~v~~l~~~~~~~~-----l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          376 LNAHEHFVTSLDFHKTAPY-----VVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EECCSSCEEEEEECSSSSC-----EEEEETTSEEEEEC-
T ss_pred             EcCCCCcEEEEEEcCCCCE-----EEEEeCCCcEEEEeC
Confidence            7899999999999999886     778889999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.9e-41  Score=310.60  Aligned_cols=278  Identities=13%  Similarity=0.225  Sum_probs=233.6

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |++++|+|++++|++++.||+|+|||+.+ +.....+ ..|...|.+++|+|+++.+++++.|+.|++|++.....    
T Consensus        58 v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~----  131 (340)
T 1got_B           58 IYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAI-PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG----  131 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEE-ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB----
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC----
Confidence            99999999999999999999999999987 4444444 48899999999999999999999999999999974321    


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~  260 (444)
                                       .......+.+|. ..|.++.|++++. +++++.|+ +|++||+++++... +..|.+.|.+++
T Consensus       132 -----------------~~~~~~~~~~h~-~~v~~~~~~~~~~-l~s~s~d~-~i~~wd~~~~~~~~~~~~h~~~v~~~~  191 (340)
T 1got_B          132 -----------------NVRVSRELAGHT-GYLSCCRFLDDNQ-IVTSSGDT-TCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             -----------------SCEEEEEEECCS-SCEEEEEEEETTE-EEEEETTS-CEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             -----------------cceeEEEecCCC-ccEEEEEECCCCc-EEEEECCC-cEEEEECCCCcEEEEEcCCCCceEEEE
Confidence                             123445677886 8999999998876 88899998 99999999887665 556889999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      |+|++++|++|+.|+.|++||+++++. ..+.+|...|++++|+|+++++++++ .++.+..|++..             
T Consensus       192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~-------------  257 (340)
T 1got_B          192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRA-------------  257 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-------------
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCC-------------
Confidence            999999999999999999999999877 56778999999999999999998764 446677776532             


Q ss_pred             cccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          340 LPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       340 ~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ...+..+..+  . .|.+++|+|+|++|++++.|      +.|++||+.+++..     ..+.+|...|.+++|+|||++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~~~~h~~~v~~~~~s~dg~~  326 (340)
T 1got_B          258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALKADRA-----GVLAGHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSC
T ss_pred             CcEEEEEccCCcccceEEEEECCCCCEEEEECCC------CeEEEEEcccCcEe-----eEeecCCCcEEEEEEcCCCCE
Confidence            2222333322  2 79999999999999999998      99999999987654     567899999999999999987


Q ss_pred             CCCceEEEEeccceeeeee
Q 013347          417 KQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       417 ~~~~~l~~~~~~g~i~~~~  435 (444)
                           |+.|..||.|++|+
T Consensus       327 -----l~s~s~D~~i~iWd  340 (340)
T 1got_B          327 -----VATGSWDSFLKIWN  340 (340)
T ss_dssp             -----EEEEETTSCEEEEC
T ss_pred             -----EEEEcCCccEEecC
Confidence                 77888999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.8e-42  Score=315.26  Aligned_cols=285  Identities=15%  Similarity=0.157  Sum_probs=223.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccC-------C--CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-------S--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~-------~--~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~  171 (444)
                      .|.+++|+|||++|++++ |+++++||...       .  ..........|...|.+++|+|+ +++++++.||+|+|||
T Consensus        32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v~lWd  109 (344)
T 4gqb_B           32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAVELWE  109 (344)
T ss_dssp             EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEEEEEe
Confidence            499999999999999877 66777776321       0  11111122346678999999999 7899999999999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-ee
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IR  250 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~  250 (444)
                      +++++....                     ....+.+|. ..|++++|+|+|++|++++.|+ +|++||+++++... +.
T Consensus       110 ~~~~~~~~~---------------------~~~~~~~H~-~~V~~v~~spdg~~l~sgs~d~-~i~iwd~~~~~~~~~~~  166 (344)
T 4gqb_B          110 LDENETLIV---------------------SKFCKYEHD-DIVSTVSVLSSGTQAVSGSKDI-CIKVWDLAQQVVLSSYR  166 (344)
T ss_dssp             ECTTSSCEE---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEEC
T ss_pred             ccCCCceeE---------------------eeccccCCC-CCEEEEEECCCCCEEEEEeCCC-eEEEEECCCCcEEEEEc
Confidence            985543322                     222356775 8999999999999999999998 99999999988765 55


Q ss_pred             cCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec-c--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          251 RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP-W--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~-~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      .|...|.+++|+|++. +|++++.|++|++||+++++... +  ..+...+.+++|+|++..++++++.++.++.|++. 
T Consensus       167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~-  245 (344)
T 4gqb_B          167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK-  245 (344)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC-
T ss_pred             CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC-
Confidence            6899999999999885 67899999999999999988632 2  35666799999999765444444556777777753 


Q ss_pred             CCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCC
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN  404 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  404 (444)
                                  ....+.++.+|. .|++++|+|+| ++|++++.|      ++|+|||+.++++.      .+.+|.+.
T Consensus       246 ------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D------~~i~vwd~~~~~~~------~~~~H~~~  301 (344)
T 4gqb_B          246 ------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED------CSLAVLDSSLSELF------RSQAHRDF  301 (344)
T ss_dssp             ------------C--CCEEEECCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTCCEEE------EECCCSSC
T ss_pred             ------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCcEE------EEcCCCCC
Confidence                        345677888888 99999999998 689999998      99999999987654      46799999


Q ss_pred             CcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      |++++|||+++.    +++.|-.||+|.+|.+.-.
T Consensus       302 V~~v~~sp~~~~----llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          302 VRDATWSPLNHS----LLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEEECSSSTT----EEEEEETTSCEEEEECCC-
T ss_pred             EEEEEEeCCCCe----EEEEEcCCCeEEEEECCCC
Confidence            999999999876    5667778999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.5e-41  Score=302.91  Aligned_cols=274  Identities=12%  Similarity=0.158  Sum_probs=229.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |++++|+|++++|++++.||.|+|||+.+ +.....+ ..|..+|.+++|+|+++.+++++.|++|++||+.+.      
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~------   87 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG------   87 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC------
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCC-CceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC------
Confidence            99999999999999999999999999987 4444444 488999999999999999999999999999999833      


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSIL  259 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~  259 (444)
                                         .....+.+|. ..|.+++|+|++++|++++.|+ +|++||++++...  .+..|...|.++
T Consensus        88 -------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A           88 -------------------EKVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             -------------------CEEEEEECCS-SCEEEEEECSSSSEEEEEETTS-CEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred             -------------------cEEEEEeCCC-CcEEEEEEcCCCCEEEEECCCC-eEEEEECCCCcchhhhhcccCCcEEEE
Confidence                               2445677785 8999999999999999999998 9999999887433  355788999999


Q ss_pred             EEec-CCCeEEEEecCCcEEEEECCCCcee-c-cccCCCceeEEEECC--CCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          260 KWSP-TGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       260 ~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +|+| ++.+|++|+.|++|++||+++++.. . ...+...+..+.|+|  ++++|++++ .++.+..|++.         
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~---------  216 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQ---------  216 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETT---------
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCC---------
Confidence            9999 6789999999999999999877652 2 335667899999987  667888664 45677777653         


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                          ....+.++.+|. .|..++|+|++++|++++.|      ++|++||+++++..     ..+..|...+++++|+|+
T Consensus       217 ----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~D------g~i~iWd~~~~~~~-----~~~~~~~~~~~~~~~~~~  281 (304)
T 2ynn_A          217 ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIATHPT  281 (304)
T ss_dssp             ----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEE-----EEECCSSSSEEEEEECTT
T ss_pred             ----CCccceeeCCCCCCEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcee-----eeccCCCccEEEEEECCC
Confidence                345677888898 99999999999999999998      99999999987765     567788889999999998


Q ss_pred             CCCCCCceEEEEeccceee
Q 013347          414 DKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~  432 (444)
                      ++.   .+++.|+++|.+.
T Consensus       282 ~~~---~~~asg~~~g~~~  297 (304)
T 2ynn_A          282 GRK---NYIASGFDNGFTV  297 (304)
T ss_dssp             CGG---GCEEEEETTEEEE
T ss_pred             CCc---eEEEEecCCceEE
Confidence            753   1478888888655

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.1e-41  Score=307.89  Aligned_cols=304  Identities=17%  Similarity=0.273  Sum_probs=236.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc-eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .|++++|+|+|++||+++.|++|+||++...... ......+|...|.+++|+|+++.|++++.|++|++|++...    
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~----   93 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD----   93 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC----
Confidence            4999999999999999999999999999863211 22334689999999999999999999999999999998722    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGG  255 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~  255 (444)
                                         ...+...+.+|. ..|.+++|+|++++|++++.|+ +|++||+..+...    .+..|...
T Consensus        94 -------------------~~~~~~~~~~h~-~~v~~v~~sp~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~h~~~  152 (345)
T 3fm0_A           94 -------------------DFECVTTLEGHE-NEVKSVAWAPSGNLLATCSRDK-SVWVWEVDEEDEYECVSVLNSHTQD  152 (345)
T ss_dssp             --------------------EEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-CEEEEEECTTSCEEEEEEECCCCSC
T ss_pred             -------------------CeEEEEEccCCC-CCceEEEEeCCCCEEEEEECCC-eEEEEECCCCCCeEEEEEecCcCCC
Confidence                               223556788886 8999999999999999999998 9999999876532    24467889


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      |.+++|+|++++|++++.|+.|++||.++++.   ..+.+|...|++++|+|+|++|++++ .++.+..|+.........
T Consensus       153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTTC
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCcc
Confidence            99999999999999999999999999988753   45678999999999999999998764 557788887643211100


Q ss_pred             CCc--CCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe----EEEEEeeeeeCCCCC
Q 013347          333 AHL--LPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL----ISLSLIGFIRGPGDN  404 (444)
Q Consensus       333 ~~~--~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~  404 (444)
                      ...  .......+.++.+ |. .|.+++|+|++..|++++.|      +.|++|+...+..    ..........+|...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~  305 (345)
T 3fm0_A          232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD------DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD  305 (345)
T ss_dssp             CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT------SCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred             ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC------CeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence            000  0001223334444 55 89999999999999999998      9999999875431    101112234689999


Q ss_pred             CcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      |++++|+|++..    +|+.|..||.|++|++...-
T Consensus       306 V~~v~~~p~~~~----~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          306 VNCVAWNPKEPG----LLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEEEECSSSTT----EEEEEETTSCEEEEEECC--
T ss_pred             EeEeEEeCCCce----EEEEcCCCCcEEEEEecCCC
Confidence            999999998743    58888899999999987544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-40  Score=306.78  Aligned_cols=281  Identities=14%  Similarity=0.198  Sum_probs=232.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |++++|+|++++||+|+.||+|+|||..+ ++....+ ..|...|.+++|+|++..+++++.|+.+++|++.........
T Consensus        67 V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~-~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~  144 (354)
T 2pbi_B           67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAV-TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA  144 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEE-ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc
Confidence            99999999999999999999999999987 4444444 478889999999999999999999999999998743221111


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~  260 (444)
                      .                   ....+.+|. ..|.+++|+|+++.|++++.|+ +|++||+++++... +..|...|.+++
T Consensus       145 ~-------------------~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~D~-~v~lwd~~~~~~~~~~~~h~~~v~~~~  203 (354)
T 2pbi_B          145 A-------------------KKKSVAMHT-NYLSACSFTNSDMQILTASGDG-TCALWDVESGQLLQSFHGHGADVLCLD  203 (354)
T ss_dssp             G-------------------GCEEEEECS-SCEEEEEECSSSSEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             c-------------------cceeeeccC-CcEEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCeEEEEEcCCCCCeEEEE
Confidence            0                   123455675 8999999999999999999998 99999999988765 567889999999


Q ss_pred             Eec--CCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          261 WSP--TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       261 ~sp--~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      |+|  ++++|++|+.|+.|++||+++++. ..+..|...|++++|+|++.++++++ .++.++.|++..           
T Consensus       204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~-----------  271 (354)
T 2pbi_B          204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA-----------  271 (354)
T ss_dssp             ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-----------
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC-----------
Confidence            988  578999999999999999999887 55778999999999999999998765 456777776532           


Q ss_pred             CCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          338 VDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       338 ~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                        ...+..+..+  . .+.+++|+|+|++|++++.|      ++|++||+.+++.+     ..+.+|...|++++|+|||
T Consensus       272 --~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~-----~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          272 --DREVAIYSKESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVLKGSRV-----SILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             --TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEE-----EEECCCSSCEEEEEECTTS
T ss_pred             --CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC------CcEEEEECCCCceE-----EEEECCCCcEEEEEECCCC
Confidence              1222223222  2 68999999999999999998      99999999887755     5678999999999999999


Q ss_pred             CCCCCceEEEEeccceeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ++     |+.|..||.|.+|+
T Consensus       339 ~~-----l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 TA-----FCSGSWDHTLRVWA  354 (354)
T ss_dssp             SC-----EEEEETTSEEEEEC
T ss_pred             CE-----EEEEcCCCCEEecC
Confidence            87     78888999999984

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-41  Score=313.58  Aligned_cols=285  Identities=16%  Similarity=0.182  Sum_probs=223.0

Q ss_pred             ccceEEEEEecCCCeEEEEEC------CCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347           99 EVDLQGVSWHQHKHIVAFISG------STQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~------dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw  170 (444)
                      ...|++++|||||++||+++.      |+.|++|+..+...  .......+|...|.+++|+|+ +.+++++.||+|+||
T Consensus        42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~lW  120 (357)
T 4g56_B           42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVELW  120 (357)
T ss_dssp             CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCEEEC
T ss_pred             cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEEEEe
Confidence            445999999999999999997      78899998876321  112222478899999999999 678889999999999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-e
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-I  249 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~  249 (444)
                      |+..++......                     ....+|. ..|.+++|+|++++|++++.|+ +|++||+++++... +
T Consensus       121 d~~~~~~~~~~~---------------------~~~~~h~-~~V~~v~~spdg~~l~sgs~dg-~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          121 EILEKESLLVNK---------------------FAKYEHD-DIVKTLSVFSDGTQAVSGGKDF-SVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             --------CCCC---------------------EEECCCS-SCEEEEEECSSSSEEEEEETTS-CEEEEETTTTEEEEEE
T ss_pred             eccccceeEEEe---------------------eccCCCC-CCEEEEEECCCCCEEEEEeCCC-eEEEEECCCCcEEEEE
Confidence            998543322111                     1234564 8999999999999999999998 99999999987765 5


Q ss_pred             ecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec---cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          250 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ..|...|.+++|+|++. ++++++.|+.|++||+++++...   ...+...+.+++|+|++..++++++.++.++.|++.
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~  257 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK  257 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC
Confidence            56889999999999875 78999999999999999887632   346777899999999865444444556777777753


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  403 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  403 (444)
                                   ....+.++.+|. .|++++|+|++ ++|++++.|      ++|+|||+++++++      ...+|.+
T Consensus       258 -------------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D------~~i~iwd~~~~~~~------~~~~H~~  312 (357)
T 4g56_B          258 -------------NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED------CTVAVLDADFSEVF------RDLSHRD  312 (357)
T ss_dssp             -------------CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT------SCEEEECTTSCEEE------EECCCSS
T ss_pred             -------------CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC------CEEEEEECCCCcEe------EECCCCC
Confidence                         345667788888 99999999997 679999988      99999999987765      2347999


Q ss_pred             CCcceeeee-CCCCCCCceEEEEeccceeeeeeee
Q 013347          404 NPKPVAFSF-HDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       404 ~i~~v~~sp-dg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .|++++||| |+++     |+.|-.||.|++|++.
T Consensus       313 ~V~~vafsP~d~~~-----l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          313 FVTGVAWSPLDHSK-----FTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             CEEEEEECSSSTTE-----EEEEETTSCEEEEECC
T ss_pred             CEEEEEEeCCCCCE-----EEEEcCCCeEEEEECC
Confidence            999999998 6664     7777789999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-39  Score=295.19  Aligned_cols=294  Identities=12%  Similarity=0.145  Sum_probs=238.4

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVK  147 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~  147 (444)
                      .+...|+||.+.                  |++++|+|++ ++|++++.|++|++|++......   ......+|...|.
T Consensus         8 ~l~~~l~gH~~~------------------V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~   69 (319)
T 3frx_A            8 VLRGTLEGHNGW------------------VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ   69 (319)
T ss_dssp             EEEEEECCCSSC------------------EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE
T ss_pred             EEEEEEccccce------------------EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE
Confidence            445678888766                  9999999965 89999999999999999753211   1222358999999


Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347          148 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA  227 (444)
Q Consensus       148 ~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  227 (444)
                      +++|+|++..+++++.|++|++||+.+.                         .....+.+|. ..|.+++|+|++++|+
T Consensus        70 ~~~~s~dg~~l~s~s~D~~v~~wd~~~~-------------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~  123 (319)
T 3frx_A           70 DCTLTADGAYALSASWDKTLRLWDVATG-------------------------ETYQRFVGHK-SDVMSVDIDKKASMII  123 (319)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEECTTSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC-------------------------CeeEEEccCC-CcEEEEEEcCCCCEEE
Confidence            9999999999999999999999999832                         3455678886 8999999999999999


Q ss_pred             EEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC------CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEE
Q 013347          228 SASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGA  300 (444)
Q Consensus       228 ~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~  300 (444)
                      +++.|+ +|++||++......+..|...|.+++|+|.      +..|++++.|+.|++||+++.+. ..+.+|...|+++
T Consensus       124 s~s~D~-~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  202 (319)
T 3frx_A          124 SGSRDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL  202 (319)
T ss_dssp             EEETTS-CEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred             EEeCCC-eEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence            999998 999999987655667788999999999985      44899999999999999998876 4577899999999


Q ss_pred             EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEE
Q 013347          301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA  380 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~  380 (444)
                      +|+|++++|++++ .++.+..|++.             ....+..+..+..|.+++|+|++.+|++++.       +.++
T Consensus       203 ~~sp~g~~l~s~~-~dg~i~iwd~~-------------~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-------~~i~  261 (319)
T 3frx_A          203 TASPDGTLIASAG-KDGEIMLWNLA-------------AKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-------TGIK  261 (319)
T ss_dssp             EECTTSSEEEEEE-TTCEEEEEETT-------------TTEEEEEEECCSCEEEEEECSSSSEEEEEET-------TEEE
T ss_pred             EEcCCCCEEEEEe-CCCeEEEEECC-------------CCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-------CCcE
Confidence            9999999999764 44666666653             2344566666668999999999999998875       4699


Q ss_pred             EEEcCCCCeEEEEEeee----eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          381 IYDARRTPLISLSLIGF----IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       381 vwd~~~~~~~~~~~~~~----~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +|++..+..... ....    ...|...+.+++|||||++     |+.|..||.|++|++.
T Consensus       262 v~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~-----l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          262 VFSLDPQYLVDD-LRPEFAGYSKAAEPHAVSLAWSADGQT-----LFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             EEEETTEEEEEE-ECCCCTTCCGGGCCCEEEEEECTTSSE-----EEEEETTSCEEEEEEE
T ss_pred             EEEeCcCeeeec-cCccccccccCcCcceeEEEECCCCCE-----EEEeecCceEEEEEEe
Confidence            999987554421 1111    1234566889999999987     8889999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.8e-40  Score=307.17  Aligned_cols=288  Identities=15%  Similarity=0.198  Sum_probs=230.0

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |++++|+|++++|++|+.|++|+|||+.+ ++....+ ..|...|.+++|+|+++.+++++.|+.+++|++........ 
T Consensus        69 V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~-~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~-  145 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAI-KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-  145 (380)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEE-ECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEE-ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC-
Confidence            99999999999999999999999999987 4444444 58999999999999999999999999999999974321110 


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCceeee------cCCC
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIR------RGFG  254 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~------~~~~  254 (444)
                                       .......+.+|. ..|.++.|+|+ +..|++++.|+ +|++||+.+++.....      .|..
T Consensus       146 -----------------~~~~~~~~~gh~-~~v~~~~~~~~~~~~l~s~s~D~-~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          146 -----------------NMPVSRVLTGHK-GYASSCQYVPDQETRLITGSGDQ-TCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             -----------------SSTTCCBCCCCS-SCCCCCBCCSSSSSCEEEECTTS-CEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             -----------------CccceeeccCCC-cceEEEEEecCCCCEEEEECCCC-cEEEEEcCCCcEEEEeecccCCCCcc
Confidence                             001123466775 78999999996 45799999998 9999999998776543      4678


Q ss_pred             CeEEEEEec-CCCeEEEEecCCcEEEEECCCC-ce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          255 GLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       255 ~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      .|.+++|++ ++++|++|+.|++|++||++.. +. ..+.+|...|++++|+|++++|+++ +.++.++.|++..     
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~i~lwd~~~-----  280 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG-SDDGTCRLFDMRT-----  280 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE-CSSSCEEEEETTT-----
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE-cCCCeEEEEECCC-----
Confidence            899999987 8899999999999999999843 33 5677899999999999999998866 4557777777532     


Q ss_pred             CCCcCCCCccccccccc-------CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347          332 DAHLLPVDLPDIVSLTG-------SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  403 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-------~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  403 (444)
                              ...+..+..       +. .|.+++|+|+|++|++++.|      |.|++||+..++.. ........+|..
T Consensus       281 --------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~-~~~~~~~~~h~~  345 (380)
T 3iz6_a          281 --------GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDTLLAEMV-LNLGTLQNSHEG  345 (380)
T ss_dssp             --------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEETTTCCEE-EEECCSCSSCCC
T ss_pred             --------CcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEECCCCceE-EEEecccCCCCC
Confidence                    122222221       11 48999999999999999988      99999999887765 222222368999


Q ss_pred             CCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          404 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       404 ~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .|++++|+|||++     |+.|..||.|++|++.
T Consensus       346 ~v~~l~~s~dg~~-----l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          346 RISCLGLSSDGSA-----LCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCCEEEECSSSSE-----EEEECTTSCEEEEECC
T ss_pred             ceEEEEECCCCCE-----EEEeeCCCCEEEEecC
Confidence            9999999999886     8888899999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-38  Score=289.69  Aligned_cols=291  Identities=17%  Similarity=0.243  Sum_probs=237.6

Q ss_pred             CcccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEE
Q 013347           70 GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVL  149 (444)
Q Consensus        70 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l  149 (444)
                      ...+...++||.+.                  |++++|+|++++||+++.||.|++|++.+ ++....+ .+|...|.++
T Consensus        12 ~~~~~~~~~gh~~~------------------v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~-~~h~~~v~~~   71 (312)
T 4ery_A           12 NYALKFTLAGHTKA------------------VSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTI-SGHKLGISDV   71 (312)
T ss_dssp             CCEEEEEECCCSSC------------------EEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEE-CCCSSCEEEE
T ss_pred             CceeEEEEcccCCc------------------EEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhh-ccCCCceEEE
Confidence            44556777888666                  99999999999999999999999999987 4444444 5899999999


Q ss_pred             EEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE
Q 013347          150 EWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA  229 (444)
Q Consensus       150 ~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  229 (444)
                      +|+|+++.+++++.|+.|++||+...                         .+...+.+|. ..|.+++|+|++++|+++
T Consensus        72 ~~~~~~~~l~s~~~d~~i~vwd~~~~-------------------------~~~~~~~~~~-~~v~~~~~~~~~~~l~s~  125 (312)
T 4ery_A           72 AWSSDSNLLVSASDDKTLKIWDVSSG-------------------------KCLKTLKGHS-NYVFCCNFNPQSNLIVSG  125 (312)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTC-------------------------CEEEEEECCS-SCEEEEEECSSSSEEEEE
T ss_pred             EEcCCCCEEEEECCCCEEEEEECCCC-------------------------cEEEEEcCCC-CCEEEEEEcCCCCEEEEE
Confidence            99999989999999999999999833                         2345567775 799999999999999999


Q ss_pred             eeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCC
Q 013347          230 SYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEG  306 (444)
Q Consensus       230 ~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g  306 (444)
                      +.|+ .|++||+++++... +..|...|.+++|+|++++|++++.|+.|++||+++++...  ...+...+..++|+|++
T Consensus       126 ~~d~-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (312)
T 4ery_A          126 SFDE-SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  204 (312)
T ss_dssp             ETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS
T ss_pred             eCCC-cEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC
Confidence            9998 99999999887665 55678899999999999999999999999999999887632  33566789999999999


Q ss_pred             CEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-c---eeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          307 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G---IEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       307 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                      +++++++. ++.+..|++.             ....+..+.+|. .   +......+++++|++++.|      +.|++|
T Consensus       205 ~~l~~~~~-d~~i~iwd~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~vw  264 (312)
T 4ery_A          205 KYILAATL-DNTLKLWDYS-------------KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED------NLVYIW  264 (312)
T ss_dssp             SEEEEEET-TTEEEEEETT-------------TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT------SCEEEE
T ss_pred             CEEEEEcC-CCeEEEEECC-------------CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC------CEEEEE
Confidence            99997654 4667776653             234455555554 2   2233344688999999988      999999


Q ss_pred             EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE-e-ccceeeeeeee
Q 013347          383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC-W-SSGFCCTYPLI  437 (444)
Q Consensus       383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~-~-~~g~i~~~~~~  437 (444)
                      |+++++.+     ..+.+|...|.+++|+|++++     ++.+ + .||.|.+|...
T Consensus       265 d~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~-----l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          265 NLQTKEIV-----QKLQGHTDVVISTACHPTENI-----IASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ETTTCCEE-----EEECCCSSCEEEEEECSSSSE-----EEEEECTTTCCEEEEECC
T ss_pred             ECCCchhh-----hhhhccCCcEEEEeecCcCCc-----eEEEEccCCccEEEecCC
Confidence            99987765     578899999999999999876     4444 3 69999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.6e-39  Score=319.77  Aligned_cols=307  Identities=15%  Similarity=0.168  Sum_probs=232.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec------CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~------~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      ..|++++|+|+|++||+++.|++|+|||+.+ ++....+..      +|.+.|++++|+|++..|++++.|++|++||+.
T Consensus       191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            3699999999999999999999999999987 444444322      799999999999999999999999999999998


Q ss_pred             CCCCcceeeccccccc----------cccccCCCCce--------EEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe
Q 013347          174 YPGNAASVRSGAASFL----------GALSRGPGTRW--------TLVDFLRSQNGEQITALSWGPDGRYLASASYESSS  235 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~  235 (444)
                      ..+....+..+.....          .-+..+.++..        .....+.+|. ..|.+++|+|+|++|++++.|+ +
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~-~~v~~l~~spdg~~l~s~s~D~-~  347 (611)
T 1nr0_A          270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN-KAITALSSSADGKTLFSADAEG-H  347 (611)
T ss_dssp             TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-C
T ss_pred             CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC-CCEEEEEEeCCCCEEEEEeCCC-c
Confidence            6554433322110000          00111112211        1345667886 8999999999999999999998 9


Q ss_pred             EEEEEcCCCCceeee-----------------------------------------------------------------
Q 013347          236 FTIWDVAQGLGTPIR-----------------------------------------------------------------  250 (444)
Q Consensus       236 i~iwd~~~~~~~~~~-----------------------------------------------------------------  250 (444)
                      |++||+.+++.....                                                                 
T Consensus       348 v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  427 (611)
T 1nr0_A          348 INSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV  427 (611)
T ss_dssp             EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE
T ss_pred             EEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEE
Confidence            999998765332110                                                                 


Q ss_pred             ------------------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEE
Q 013347          251 ------------------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       251 ------------------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~  310 (444)
                                        .+...+.+++|+|||++|++|+.|++|++||+.+++..  ....|...|++++|+|+|++|+
T Consensus       428 ~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~la  507 (611)
T 1nr0_A          428 AACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV  507 (611)
T ss_dssp             EEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             EEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEE
Confidence                              11234678999999999999999999999999876542  2367999999999999999999


Q ss_pred             EEEcCCceEEEEEeecCCCCcCCCcCCCCccccc--ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV--SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      +++ .+..+..|++...            ...+.  .+.+|. .|.+++|+|||++||+++.|      ++|+||+++++
T Consensus       508 s~s-~d~~v~~w~~~~~------------~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D------~~v~lW~~~~~  568 (611)
T 1nr0_A          508 ATD-QSRKVIPYSVANN------------FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKP  568 (611)
T ss_dssp             EEE-TTSCEEEEEGGGT------------TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCT
T ss_pred             EEc-CCCCEEEEEcCCC------------CceeeeeeeeecccceeEEEECCCCCEEEEEECC------CcEEEEECCCc
Confidence            764 4467777775321            11222  233477 89999999999999999998      99999999875


Q ss_pred             CeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          388 PLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       388 ~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ....   ...+.+| ...|.+++|+||++      |+.+..||.|++|++.
T Consensus       569 ~~~~---~~~~~~h~~~~v~~v~fs~d~~------l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          569 SDHP---IIIKGAHAMSSVNSVIWLNETT------IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TSCC---EEETTSSTTSCEEEEEEEETTE------EEEEETTSCEEEEECC
T ss_pred             cccc---chhhccCcccCeeEEEEcCCCE------EEEecCCCCEEEEecc
Confidence            4220   1345688 88999999999974      5667799999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-38  Score=293.41  Aligned_cols=297  Identities=15%  Similarity=0.178  Sum_probs=231.1

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEE-----ec-CCCeEEEEECCCeEEEEEccCCCC-----ceeEEec
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSW-----HQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTS  140 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp-~g~~la~~~~dg~v~iw~~~~~~~-----~~~~~~~  140 (444)
                      .+...|+||.+.                  |++++|     ++ ++++||+|+.|++|+||++.....     .......
T Consensus        12 ~~~~~l~gH~~~------------------V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~   73 (343)
T 2xzm_R           12 VKRGILEGHSDW------------------VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT   73 (343)
T ss_dssp             EEEEEEECCSSC------------------EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC
T ss_pred             eeeeeeccchhh------------------hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc
Confidence            345678888765                  999999     77 999999999999999999975321     1222336


Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      +|...|.+++|+|++..+++++.|++|++||+...                         .....+.+|. ..|.+++|+
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~-------------------------~~~~~~~~h~-~~v~~v~~s  127 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG-------------------------TTYKRFVGHQ-SEVYSVAFS  127 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-------------------------CEEEEEECCC-SCEEEEEEC
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------cEEEEEcCCC-CcEEEEEEC
Confidence            89999999999999888999999999999999833                         2445677785 899999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeee---cCCCCeEEEEEecCC----------CeEEEEecCCcEEEEECCCCce
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTG----------DYFFAAKFDGTFYLWETNTWTS  287 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~----------~~l~~~~~d~~v~iwd~~~~~~  287 (444)
                      |++++|++++.|+ +|++||+.........   .|...|.+++|+|++          .+|++++.|+.|++||......
T Consensus       128 p~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  206 (343)
T 2xzm_R          128 PDNRQILSAGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR  206 (343)
T ss_dssp             SSTTEEEEEETTS-CEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEE
T ss_pred             CCCCEEEEEcCCC-EEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCcee
Confidence            9999999999998 9999999844333222   567889999999987          7899999999999999654434


Q ss_pred             eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEE
Q 013347          288 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  367 (444)
Q Consensus       288 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  367 (444)
                      ..+..|...|.+++|+|+|++|++++ .++.+..|++...            ......+.....|.+++|+|++++++++
T Consensus       207 ~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          207 YTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNL------------TYPQREFDAGSTINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEE-TTCEEEEEESSCC------------SSCSEEEECSSCEEEEEECSSSCEEEEE
T ss_pred             EEEcCccccceEEEECCCCCEEEEEc-CCCeEEEEECCCC------------cccceeecCCCcEEEEEECCCCCEEEEE
Confidence            56778999999999999999999764 4466777765221            1122233233379999999999988765


Q ss_pred             ecCCCccccceEEEEEcCCCCeEEEEEee--------eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          368 YKGGDDIYKGLIAIYDARRTPLISLSLIG--------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       368 ~~d~~~~~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      + |      +.|++|++.+++......+.        ...+|...|.+++|+|+|++     |+.|..||.|++|++..
T Consensus       274 ~-d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          274 T-D------QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK-----LFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             E-S------SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC-----EEEEETTSEEEEEEEEE
T ss_pred             C-C------CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe-----EEEecCCceEEEEEEEc
Confidence            4 5      78999999876543211111        12368888999999999986     88899999999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-38  Score=296.43  Aligned_cols=296  Identities=16%  Similarity=0.188  Sum_probs=236.2

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC------------------CCCeEEEEEeeCCCeEEE
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS------------------QRDVKVLEWRPNGGRSLS  160 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~------------------~~~v~~l~~s~~~~~ll~  160 (444)
                      ...|++++|+|||++||+++ ++.++||++.+ +.....+. .|                  ...|.+++|+|+++.+++
T Consensus        64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~-g~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLS-DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEEC-C-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEc-CCcEEEEEecC-CCEEEEec-CccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            34699999999999999976 78999999987 44433332 22                  234999999999999999


Q ss_pred             EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347          161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  240 (444)
Q Consensus       161 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd  240 (444)
                      ++.|+.|++||+...                         .....+.+|. ..|.+++|+|++++|++++.|+ +|++||
T Consensus       141 ~~~d~~i~iwd~~~~-------------------------~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~-~v~iwd  193 (393)
T 1erj_A          141 GAEDRLIRIWDIENR-------------------------KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGDR-TVRIWD  193 (393)
T ss_dssp             EETTSCEEEEETTTT-------------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-EEEEEE
T ss_pred             EcCCCeEEEEECCCC-------------------------cEEEEEccCC-CCEEEEEEcCCCCEEEEecCCC-cEEEEE
Confidence            999999999999732                         3455677885 8999999999999999999998 999999


Q ss_pred             cCCCCceeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCcee-cc-------ccCCCceeEEEECCCCCEEEE
Q 013347          241 VAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE-PW-------SSTSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       241 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~-~~-------~~~~~~v~~~~~sp~g~~l~~  311 (444)
                      +++++......+...+.+++|+| ++++|++++.|+.|++||+++++.. .+       .+|...|.+++|+|++++|++
T Consensus       194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s  273 (393)
T 1erj_A          194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  273 (393)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             CCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence            99988877777888999999999 8999999999999999999988763 22       478899999999999999987


Q ss_pred             EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ++ .++.+..|++......... ...........+.+|. .|.+++|+|++++|++++.|      +.|++||+++++.+
T Consensus       274 ~s-~d~~v~~wd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D------~~v~iwd~~~~~~~  345 (393)
T 1erj_A          274 GS-LDRSVKLWNLQNANNKSDS-KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------RGVLFWDKKSGNPL  345 (393)
T ss_dssp             EE-TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------SEEEEEETTTCCEE
T ss_pred             Ee-CCCEEEEEECCCCCCcccc-cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC------CeEEEEECCCCeEE
Confidence            64 4577777776542111000 0001223445667888 89999999999999999998      99999999987765


Q ss_pred             EEEEeeeeeCCCCCCcceeeeeCCCCC-CCceEEEEeccceeeeeeee
Q 013347          391 SLSLIGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       391 ~~~~~~~~~~~~~~i~~v~~spdg~~~-~~~~l~~~~~~g~i~~~~~~  437 (444)
                           ..+.+|...|.+++|+++..+. .+.+++.|..||.|++|++.
T Consensus       346 -----~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          346 -----LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             -----EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             -----EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence                 5688999999999999876552 45578889999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7e-38  Score=309.08  Aligned_cols=297  Identities=19%  Similarity=0.283  Sum_probs=239.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|++++|++++.|+.|++|+..  ++....+ .+|...|++++|+|++..+++++.|+.|++|+.... ...
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~--~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~  338 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ  338 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC--CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE
Confidence            479999999999999999999999999976  3444444 589999999999999889999999999999998632 222


Q ss_pred             eeeccccccccccccCCCCc----------e-------EEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347          180 SVRSGAASFLGALSRGPGTR----------W-------TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~----------~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~  242 (444)
                      .+ .+....+..+...++++          .       .+...+.+|. ..|.+++|+|++++|++++.|+ .|++||..
T Consensus       339 ~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d~-~v~~~~~~  415 (577)
T 2ymu_A          339 TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDK-TVKLWNRN  415 (577)
T ss_dssp             EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCS-SCEEEEEECTTSSCEEEEETTS-EEEEECTT
T ss_pred             EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCC-CCeEEEEECCCCCEEEEEeCCC-EEEEEeCC
Confidence            11 11112222222222221          1       1345677775 8999999999999999999998 99999976


Q ss_pred             CCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          243 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       243 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      ......+..|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|++++|++++. ++.+..|
T Consensus       416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~~i~iw  494 (577)
T 2ymu_A          416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLW  494 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TSEEEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCEEEEE
Confidence            544455778899999999999999999999999999999876555778899999999999999999997754 4566655


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  401 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~  401 (444)
                      +.              +...++.+.+|. .|++++|+|||++|++++.|      +.|+|||.. ++.+     ..+.+|
T Consensus       495 ~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~v~lwd~~-~~~~-----~~~~~h  548 (577)
T 2ymu_A          495 NR--------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD------KTVKLWNRN-GQLL-----QTLTGH  548 (577)
T ss_dssp             ET--------------TSCEEEEEECCSSCEEEEEECTTSSCEEEEETT------SEEEEECTT-SCEE-----EEEECC
T ss_pred             cC--------------CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECc------CEEEEEeCC-CCEE-----EEEcCC
Confidence            52              456677888888 99999999999999999998      999999964 4433     568899


Q ss_pred             CCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          402 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       402 ~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ...|++++|+|||++     |+.+-.||.|++|+
T Consensus       549 ~~~v~~~~fs~dg~~-----l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          549 SSSVWGVAFSPDGQT-----IASASSDKTVKLWN  577 (577)
T ss_dssp             SSCEEEEEECTTSSC-----EEEEETTSCEEEEC
T ss_pred             CCCEEEEEEcCCCCE-----EEEEeCCCEEEEeC
Confidence            999999999999987     55677899999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=285.41  Aligned_cols=294  Identities=15%  Similarity=0.258  Sum_probs=217.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecC-CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSD-SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~-~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      |++++|+|+  +||+++.|++|+||++.... .....+..+ |...|.+++|+|+++.+++++.|++|+||++...... 
T Consensus        17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~-   93 (330)
T 2hes_X           17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR-   93 (330)
T ss_dssp             EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred             eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc-
Confidence            999999998  99999999999999998632 222333234 9999999999999888999999999999998632110 


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-C---ce-eeecCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-L---GT-PIRRGFG  254 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~---~~-~~~~~~~  254 (444)
                                       .....+...+.+|. ..|.+++|+|++++|++++.|+ +|++||++.. .   .. .+..|..
T Consensus        94 -----------------~~~~~~~~~~~~h~-~~V~~v~~sp~g~~las~s~D~-~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           94 -----------------TFEMDLLAIIEGHE-NEVKGVAWSNDGYYLATCSRDK-SVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             ------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS-CEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             -----------------cccceeEEEEcCCC-CcEEEEEECCCCCEEEEEeCCC-EEEEEeccCCCCCeEEEEEeccCCC
Confidence                             00123556778886 8999999999999999999998 9999999533 2   22 3556889


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCc--e-eccccCCCceeEEEECCC--CCEEEEEEcCCceEEEEEeecCCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~--~-~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      .|.+++|+|++++|++++.|++|++||..++.  . ..+.+|...|.+++|+|+  +..|+++ +.++.+..|++.....
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~D~~v~iw~~~~~~~  233 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSG-SDDSTVRVWKYMGDDE  233 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEE-ETTSCEEEEEEEEECT
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEE-eCCCeEEEEEecCCCc
Confidence            99999999999999999999999999998763  2 456789999999999998  5667755 4557788887754211


Q ss_pred             CcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC-CCc
Q 013347          330 SLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPK  406 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~i~  406 (444)
                      ..     .........+.+ |. .|.+++|++++ +|++++.|      +.|+||+..+++...  ......+|.. .|.
T Consensus       234 ~~-----~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~d------g~v~iw~~~~~~~~~--~~~~~~~h~~~~v~  299 (330)
T 2hes_X          234 DD-----QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD------GVLAVYEEVDGEWKV--FAKRALCHGVYEIN  299 (330)
T ss_dssp             TS-----CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETT------SCEEEEEEETTEEEE--EEEESCTTTTSCEE
T ss_pred             cc-----cceeEEeeecccccccceEEEEEcCCC-EEEEEeCC------CEEEEEEcCCCceEE--EeccccccccceEE
Confidence            00     001122334443 66 89999999765 78899988      999999998764211  1122357876 899


Q ss_pred             ceeeee--CCCCCCCceEEEEeccceeeeeeee
Q 013347          407 PVAFSF--HDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       407 ~v~~sp--dg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +++|+|  ++++     |+.+..||.|++|++.
T Consensus       300 ~v~~~~~~~~~~-----las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          300 VVKWLELNGKTI-----LATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEC-----CC-----EEEEETTSEEEEEEC-
T ss_pred             EEEEecCCCceE-----EEEecCCCcEEEEEec
Confidence            999999  5654     8888899999999874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.2e-37  Score=305.58  Aligned_cols=296  Identities=19%  Similarity=0.276  Sum_probs=234.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |++++|||||++||+++.|+.|+|||..  ++....+ .+|...|++++|+||++.|++++.|++|+|||+. .+....+
T Consensus        19 V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l-~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~~   94 (577)
T 2ymu_A           19 VRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL   94 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEEE
Confidence            9999999999999999999999999964  5555555 5999999999999999999999999999999975 2222211


Q ss_pred             eccccccccccccCCCCceE----------------------------------------------------------EE
Q 013347          182 RSGAASFLGALSRGPGTRWT----------------------------------------------------------LV  203 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------~~  203 (444)
                       .+....+..+.+.+++++.                                                          ..
T Consensus        95 -~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (577)
T 2ymu_A           95 -TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL  173 (577)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE
T ss_pred             -ECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeee
Confidence             1212222222222211100                                                          11


Q ss_pred             EEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          204 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       204 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      .....| ...|.++.++|++++|++++.|+ .|++||........+..|...|.+++|+|++++|++++.|+.|++||..
T Consensus       174 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~  251 (577)
T 2ymu_A          174 QTLTGH-SSSVWGVAFSPDGQTIASASDDK-TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  251 (577)
T ss_dssp             EEEECC-SSCEEEEEECTTSSCEEEEETTS-EEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eeccCC-CcceeeeeecCCCCEEEEEcCCC-EEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence            223344 36889999999999999999998 9999997655445577889999999999999999999999999999987


Q ss_pred             CCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC
Q 013347          284 TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE  362 (444)
Q Consensus       284 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~  362 (444)
                      ......+.+|...|++++|+|+++.+++++. ++.++.|+.              ....+..+.+|. .|.+++|+|+++
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d~~i~~w~~--------------~~~~~~~~~~h~~~v~~~~~~~~~~  316 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASD-DKTVKLWNR--------------NGQLLQTLTGHSSSVWGVAFSPDGQ  316 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEET--------------TSCEEEEECCCSSCEEEEEECTTSS
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEeC--------------CCcEEEEEecCCCCeEEEEECCCCC
Confidence            6555778899999999999999999987754 455665553              345566778888 999999999999


Q ss_pred             EEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +|++++.|      ++|++||+...++      ..+.+|...|.+++|+|+|++     ++.+..+|.|.+|+.
T Consensus       317 ~l~t~~~d------~~i~~w~~~~~~~------~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~v~~~~~  373 (577)
T 2ymu_A          317 TIASASDD------KTVKLWNRNGQHL------QTLTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWNR  373 (577)
T ss_dssp             EEEEEETT------SCEEEEETTSCEE------EEECCCSSCEEEEEECTTSSE-----EEEEETTSEEEEEET
T ss_pred             EEEEEeCC------CeEEEEeCCCCee------EEEeCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEcC
Confidence            99999988      9999999876543      356789999999999999886     788999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.4e-37  Score=282.80  Aligned_cols=280  Identities=16%  Similarity=0.228  Sum_probs=232.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCce---eEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA---CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~---~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .|++++|+|++++|++++ ||.|++|++.......   ......|...|.+++|+|+++.+++++.|+.|++|++.....
T Consensus        53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc
Confidence            499999999999999998 9999999998742221   111127899999999999988899999999999999984321


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                             .....+..|. ..|.+++|+|++++|++++.|+ .|++||+++++... +..|...+
T Consensus       132 -----------------------~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg-~v~~~d~~~~~~~~~~~~~~~~i  186 (337)
T 1gxr_A          132 -----------------------RIKAELTSSA-PACYALAISPDSKVCFSCCSDG-NIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             -----------------------EEEEEEECSS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCE
T ss_pred             -----------------------ceeeecccCC-CceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceeeeeecccCce
Confidence                                   2334566664 7899999999999999999998 99999999887665 44578899


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|+++++++++. ++.+..|++..          
T Consensus       187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~~~----------  255 (337)
T 1gxr_A          187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNK----------  255 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTS----------
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC-CCcEEEEECCC----------
Confidence            9999999999999999999999999999888666678889999999999999997754 46677776532          


Q ss_pred             CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                          .....+..|. .|.+++|+|++++|++++.|      +.|++||+.+++..      ....|...|.+++|+|+++
T Consensus       256 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~~~~------~~~~~~~~v~~~~~s~~~~  319 (337)
T 1gxr_A          256 ----PDKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASI------FQSKESSSVLSCDISVDDK  319 (337)
T ss_dssp             ----SCEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEE------EEEECSSCEEEEEECTTSC
T ss_pred             ----CCeEEEcCCccceeEEEECCCCCEEEEecCC------CcEEEEECCCCeEE------EEecCCCcEEEEEECCCCC
Confidence                2233455666 89999999999999999988      99999999988765      2234788899999999987


Q ss_pred             CCCCceEEEEeccceeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +     ++++..+|.|.+|++.|
T Consensus       320 ~-----l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          320 Y-----IVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             E-----EEEEETTSCEEEEEEEC
T ss_pred             E-----EEEecCCCeEEEEEEeC
Confidence            5     78888999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-37  Score=306.11  Aligned_cols=284  Identities=13%  Similarity=0.195  Sum_probs=228.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+.+++|+|||++||+++ ++.|+||++.+ +.....+ .+|...|++++|+|+|+++++++.|++|+|||+.....   
T Consensus        20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~-~~~~~~~-~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~---   93 (611)
T 1nr0_A           20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---   93 (611)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---
T ss_pred             ceeEEeeCCCCCEEEeCC-CCEEEEecCCC-cccCeEe-cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc---
Confidence            477899999999999987 57999999986 4445555 59999999999999998899999999999999863221   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC---CeEEEEEcCCCCceeeecCCCCeE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                                          .+...+.+|. ..|.+++|+|++++|++++.+.   +.|++||... ....+..|...|.
T Consensus        94 --------------------~~~~~~~~~~-~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~  151 (611)
T 1nr0_A           94 --------------------ILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMN  151 (611)
T ss_dssp             --------------------CEEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEE
T ss_pred             --------------------eeeEeecccC-CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCce
Confidence                                1233566775 8999999999999999988652   2688888532 2334677889999


Q ss_pred             EEEEecCCC-eEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          258 ILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       258 ~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      +++|+|++. .|++++.|++|++||..+++. ..+.+|...|++++|+|+|++|++++ .++.++.|++..         
T Consensus       152 ~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s-~D~~i~lwd~~~---------  221 (611)
T 1nr0_A          152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVD---------  221 (611)
T ss_dssp             EEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT---------
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE-CCCcEEEEECCC---------
Confidence            999999987 589999999999999988776 55778999999999999999998764 446677666432         


Q ss_pred             CCCCccccccc-------ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE--------------
Q 013347          336 LPVDLPDIVSL-------TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS--------------  393 (444)
Q Consensus       336 ~~~~~~~~~~~-------~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~--------------  393 (444)
                          ...+..+       .+|. .|.+++|+|||++|++++.|      ++|++||+.+++.....              
T Consensus       222 ----g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~  291 (611)
T 1nr0_A          222 ----GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVEKTIPVGTRIEDQQLGII  291 (611)
T ss_dssp             ----CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSGGGCEEEEE
T ss_pred             ----CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCceeeeecCCCCccceeEEEE
Confidence                2222223       2677 99999999999999999998      99999999887654321              


Q ss_pred             ------------------------EeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          394 ------------------------LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       394 ------------------------~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                                              ....+.+|...|++++|+|||++     |+.+..||.|++|++.
T Consensus       292 ~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-----l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          292 WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-----LFSADAEGHINSWDIS  354 (611)
T ss_dssp             ECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETT
T ss_pred             EcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-----EEEEeCCCcEEEEECC
Confidence                                    22345689999999999999886     7788899999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=280.74  Aligned_cols=294  Identities=13%  Similarity=0.126  Sum_probs=237.0

Q ss_pred             cccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe
Q 013347           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR  152 (444)
Q Consensus        73 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s  152 (444)
                      ....|+||.+.                  |++++|+|++++|++++.||.|++||+.+ ++....+ .+|...|.+++|+
T Consensus        24 ~~~~l~~h~~~------------------v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~~~~~   83 (369)
T 3zwl_B           24 KAIKLTGHERP------------------LTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTL-DGHTGTIWSIDVD   83 (369)
T ss_dssp             EEEEEECCSSC------------------EEEEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEE-CCCSSCEEEEEEC
T ss_pred             ccEEEEEeece------------------EEEEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhh-hhcCCcEEEEEEc
Confidence            33567788666                  99999999999999999999999999987 5555544 5899999999999


Q ss_pred             eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC
Q 013347          153 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE  232 (444)
Q Consensus       153 ~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  232 (444)
                      |+++.+++++.|+.|++||+.....                         ...+. + ...+.+++|+|+++++++++.+
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~-------------------------~~~~~-~-~~~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQC-------------------------VATWK-S-PVPVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCE-------------------------EEEEE-C-SSCEEEEEECTTSSEEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcE-------------------------EEEee-c-CCCeEEEEEccCCCEEEEecCC
Confidence            9988999999999999999984332                         22333 3 3789999999999999999988


Q ss_pred             -----CCeEEEEEcCCCCc------------eeeecCCC--CeEEEEEecCCCeEEEEecCCcEEEEECCC-Cce-eccc
Q 013347          233 -----SSSFTIWDVAQGLG------------TPIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS-EPWS  291 (444)
Q Consensus       233 -----~~~i~iwd~~~~~~------------~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~-~~~~  291 (444)
                           + .|.+||+.....            ..+..+..  .+.+++|+|++++|++++.|+.|++||+++ .+. ..+.
T Consensus       137 ~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  215 (369)
T 3zwl_B          137 VMKNPG-SINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID  215 (369)
T ss_dssp             BTTBCC-EEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred             ccCCCC-EEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence                 8 999999987642            22333444  899999999999999999999999999998 444 4566


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCC
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~  371 (444)
                      .|...|.+++|+|++++|++++. ++.+..|++.             ....+..+.....+..++|+|+++++++++.++
T Consensus       216 ~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          216 LHEKSISDMQFSPDLTYFITSSR-DTNSFLVDVS-------------TLQVLKKYETDCPLNTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEET-TSEEEEEETT-------------TCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred             cCCCceeEEEECCCCCEEEEecC-CceEEEEECC-------------CCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence            89999999999999999987644 4667776653             234445555444899999999999999998872


Q ss_pred             Cc--------cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          372 DD--------IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       372 ~~--------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      ..        .....+++||+.+++..     ..+.+|...|.+++|+|+|++     |+.+..+|.|.+|++.-
T Consensus       282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          282 AKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAISPQGTS-----YASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             -------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSE-----EEEEETTSEEEEEEECH
T ss_pred             CceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEECCCCCE-----EEEEcCCCeEEEEECcc
Confidence            10        00018999999987765     567899999999999999885     78888999999999853

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.7e-38  Score=290.23  Aligned_cols=292  Identities=12%  Similarity=0.054  Sum_probs=216.7

Q ss_pred             ccceEEEEEecCCCeEEEEECC-------CeEEEEEccCCCCce--------eEEecCCCCCeEEEEEeeCCCeEEEEe-
Q 013347           99 EVDLQGVSWHQHKHIVAFISGS-------TQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGGRSLSVG-  162 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~d-------g~v~iw~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~~~~ll~~~-  162 (444)
                      +++|++++|+|||++||+|+.+       +.|++|++.......        .....+|...|.+++++.  ..+++++ 
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~--~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK--GIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET--TEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC--CEEEEEEC
Confidence            4689999999999999998754       359999998642211        112357888888887654  4555553 


Q ss_pred             ----------cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEE--EeeccCCCceEEEEEccCCCeEEEEe
Q 013347          163 ----------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD--FLRSQNGEQITALSWGPDGRYLASAS  230 (444)
Q Consensus       163 ----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~  230 (444)
                                .|+.+++|++............                  ..  ....+ +..+.+++|+|||+++++++
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~------------------~~~~~~~~~-~~~~~~v~fSpDg~~la~as  152 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS------------------VDFDASTNA-DDYTKLVYISREGTVAAIAS  152 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE------------------ECSSCCCCT-TCCEEEEEECTTSSCEEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeee------------------eceeecCCc-ccCEEEEEEcCCCCEEEEEE
Confidence                      3577899988643322111100                  00  01112 25688999999999987654


Q ss_pred             --eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee---ccccCCCceeEEEECCC
Q 013347          231 --YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPE  305 (444)
Q Consensus       231 --~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~~~~sp~  305 (444)
                        .|+ +|+|||+++++......|.+.|.+++|+|||+++++++.+ .+++|+..+++..   ....|...+.+++|+|+
T Consensus       153 ~~~d~-~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd  230 (365)
T 4h5i_A          153 SKVPA-IMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD  230 (365)
T ss_dssp             SCSSC-EEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred             CCCCC-EEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence              677 9999999999888877888999999999999999999855 5677777766652   34578889999999999


Q ss_pred             CCEEEEEEcCCc---eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347          306 GRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI  381 (444)
Q Consensus       306 g~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v  381 (444)
                      ++++++++.+..   .++.|++....         ........+.+|. .|++++|+|||++||+|+.|      ++|+|
T Consensus       231 g~~l~~~s~d~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D------~~V~i  295 (365)
T 4h5i_A          231 DTVLIAASLKKGKGIVLTKISIKSGN---------TSVLRSKQVTNRFKGITSMDVDMKGELAVLASND------NSIAL  295 (365)
T ss_dssp             TEEEEEEEESSSCCEEEEEEEEETTE---------EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT------SCEEE
T ss_pred             CCEEEEEecCCcceeEEeecccccce---------ecceeeeeecCCCCCeEeEEECCCCCceEEEcCC------CEEEE
Confidence            999998765443   45555543210         0112234566777 89999999999999999998      99999


Q ss_pred             EEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          382 YDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       382 wd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ||+++++.+    ...+.+|...|++++|||||++     |+.|..||+|++|++.
T Consensus       296 wd~~~~~~~----~~~~~gH~~~V~~v~fSpdg~~-----laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          296 VKLKDLSMS----KIFKQAHSFAITEVTISPDSTY-----VASVSAANTIHIIKLP  342 (365)
T ss_dssp             EETTTTEEE----EEETTSSSSCEEEEEECTTSCE-----EEEEETTSEEEEEECC
T ss_pred             EECCCCcEE----EEecCcccCCEEEEEECCCCCE-----EEEEeCCCeEEEEEcC
Confidence            999987765    1235789999999999999986     8888999999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.4e-36  Score=274.02  Aligned_cols=297  Identities=12%  Similarity=0.173  Sum_probs=233.8

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecC-CCeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVK  147 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~  147 (444)
                      .++.+|+||.+.                  |++++|+|+ +++||+|+.|++|+|||+......   ......+|...|.
T Consensus        29 ~l~~tL~GH~~~------------------V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~   90 (340)
T 4aow_A           29 TLRGTLKGHNGW------------------VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS   90 (340)
T ss_dssp             EEEEEECCCSSC------------------EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE
T ss_pred             EEEEEECCccCC------------------EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE
Confidence            466789999877                  999999997 689999999999999999864221   1223368999999


Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347          148 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA  227 (444)
Q Consensus       148 ~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  227 (444)
                      +++|+|++..+++++.|+.|++|+.....                         .......+ ...+..+.+++++++|+
T Consensus        91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~-------------------------~~~~~~~~-~~~~~~~~~~~~~~~l~  144 (340)
T 4aow_A           91 DVVISSDGQFALSGSWDGTLRLWDLTTGT-------------------------TTRRFVGH-TKDVLSVAFSSDNRQIV  144 (340)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTE-------------------------EEEEEECC-SSCEEEEEECTTSSCEE
T ss_pred             EEEECCCCCEEEEEcccccceEEeecccc-------------------------eeeeecCC-CCceeEEEEeecCccce
Confidence            99999999999999999999999987322                         22233334 36888999999999999


Q ss_pred             EEeeCCCeEEEEEcCCCCcee--eecCCCCeEEEEEecCC--CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEE
Q 013347          228 SASYESSSFTIWDVAQGLGTP--IRRGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATW  302 (444)
Q Consensus       228 ~~~~d~~~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~--~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~  302 (444)
                      +++.|+ .+++||+.......  ...|...+..++|++++  .++++++.|+.|++||+++++. ..+.+|...|++++|
T Consensus       145 s~s~d~-~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~  223 (340)
T 4aow_A          145 SGSRDK-TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV  223 (340)
T ss_dssp             EEETTS-CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             eecCCC-eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE
Confidence            999998 99999987664433  34567889999999864  4678999999999999999887 456789999999999


Q ss_pred             CCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          303 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       303 sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                      +|++++|++++. ++.+..|++.             ....+..+.++..|..+.|+|++.++++ +.|      +.|++|
T Consensus       224 s~~~~~l~s~s~-Dg~i~iwd~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~d------~~i~iw  282 (340)
T 4aow_A          224 SPDGSLCASGGK-DGQAMLWDLN-------------EGKHLYTLDGGDIINALCFSPNRYWLCA-ATG------PSIKIW  282 (340)
T ss_dssp             CTTSSEEEEEET-TCEEEEEETT-------------TTEEEEEEECSSCEEEEEECSSSSEEEE-EET------TEEEEE
T ss_pred             CCCCCEEEEEeC-CCeEEEEEec-------------cCceeeeecCCceEEeeecCCCCceeec-cCC------CEEEEE
Confidence            999999987644 4666666643             3445566667778999999999876654 556      899999


Q ss_pred             EcCCCCeEEEEE----eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          383 DARRTPLISLSL----IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       383 d~~~~~~~~~~~----~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      |++++.......    .....+|...|++++|+|||++     |+.|..||.|++|++.-.
T Consensus       283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-----l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT-----LFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE-----EEEEETTSCEEEEEEEC-
T ss_pred             ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE-----EEEEeCCCEEEEEeCCCc
Confidence            999876553211    1234578899999999999886     788889999999998643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=278.67  Aligned_cols=286  Identities=9%  Similarity=0.063  Sum_probs=226.7

Q ss_pred             ceEEEEEecCCCeEE-EEEC---CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC---CCeEEEEecCCcEEEEecC
Q 013347          101 DLQGVSWHQHKHIVA-FISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~g~~la-~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~---~~~ll~~~~dg~v~iw~~~  173 (444)
                      .|++++|+|++..++ +++.   |+.|+||++.+ ++.......+|...|.+++|+|+   +..+++++.|+.|++||+.
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            399999999996555 5554   89999999997 44444444588999999999998   5888888999999999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE------EccCCCeEEEEeeCCCeEEEEEcCCCC-c
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS------WGPDGRYLASASYESSSFTIWDVAQGL-G  246 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~sp~~~~l~~~~~d~~~i~iwd~~~~~-~  246 (444)
                      ....                        ....+.+|. ..|.++.      |+|++++|++++.|+ .|++||+++++ .
T Consensus        99 ~~~~------------------------~~~~~~~~~-~~v~~~~~~~~~~~s~~~~~l~~~~~d~-~i~vwd~~~~~~~  152 (357)
T 3i2n_A           99 APEM------------------------PVYSVKGHK-EIINAIDGIGGLGIGEGAPEIVTGSRDG-TVKVWDPRQKDDP  152 (357)
T ss_dssp             SCSS------------------------CSEEECCCS-SCEEEEEEESGGGCC-CCCEEEEEETTS-CEEEECTTSCSSC
T ss_pred             CCCc------------------------cEEEEEecc-cceEEEeeccccccCCCccEEEEEeCCC-eEEEEeCCCCCCc
Confidence            5431                        122355664 7899995      578999999999998 99999999876 3


Q ss_pred             ee-eecCC----CCeEEEE----EecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECC---CCCEEEEEEc
Q 013347          247 TP-IRRGF----GGLSILK----WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP---EGRMILLAFA  314 (444)
Q Consensus       247 ~~-~~~~~----~~v~~~~----~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~  314 (444)
                      .. +..+.    ..+.+++    |+|++++|++++.|+.|++||+++++......|...+.+++|+|   ++.++++++ 
T Consensus       153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-  231 (357)
T 3i2n_A          153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS-  231 (357)
T ss_dssp             SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE-
T ss_pred             ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC-
Confidence            33 33333    3788888    78899999999999999999999998877778899999999999   899988764 


Q ss_pred             CCceEEEEEeecCCCCcCCCcCCCCcccccc-----cccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCC
Q 013347          315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      .++.+..|++...             ..+..     +.+|. .|.+++|+|+++ +|++++.|      |.|++||++.+
T Consensus       232 ~dg~i~i~d~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~  292 (357)
T 3i2n_A          232 LEGKFHVFDMRTQ-------------HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA------GGLHLWKYEYP  292 (357)
T ss_dssp             STTEEEEEEEEEE-------------ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------SEEEEEEEECC
T ss_pred             CCCeEEEEeCcCC-------------CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC------CcEEEeecCCC
Confidence            4577788876532             22222     33677 999999999998 89999988      99999999865


Q ss_pred             CeE--------------EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEE-EEeccceeeeeeeee
Q 013347          388 PLI--------------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLIF  438 (444)
Q Consensus       388 ~~~--------------~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~-~~~~~g~i~~~~~~~  438 (444)
                      ...              ....+..+.+|...|++++|+|+|++     |+ .+..+|.|++|++.-
T Consensus       293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG-----LCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT-----EEEEEETTSEEEEEEECC
T ss_pred             cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe-----EEEEecCCCcEEEEECCC
Confidence            432              12456678899999999999999987     55 578899999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.1e-36  Score=281.91  Aligned_cols=291  Identities=13%  Similarity=0.094  Sum_probs=213.9

Q ss_pred             ceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCceeEEe-cCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .|++++|+|++ ++||+++.||.|+||++.+ +.....+. .+|...|.+++|+| ++..+++++.|+.|++||+.. ..
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~  152 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV  152 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTS-TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence            49999999999 9999999999999999997 44444432 37999999999999 667788888899999999982 11


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                      ..                      .......+ ...|.+++|+|++++|++++.|+ .|++||++......+..|...|.
T Consensus       153 ~~----------------------~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          153 IQ----------------------VFAKTDSW-DYWYCCVDVSVSRQMLATGDSTG-RLLLLGLDGHEIFKEKLHKAKVT  208 (383)
T ss_dssp             EE----------------------EEECCCCS-SCCEEEEEEETTTTEEEEEETTS-EEEEEETTSCEEEEEECSSSCEE
T ss_pred             eE----------------------EEeccCCC-CCCeEEEEECCCCCEEEEECCCC-CEEEEECCCCEEEEeccCCCcEE
Confidence            11                      11112223 36799999999999999999998 99999996554555777899999


Q ss_pred             EEEEecCCC-eEEEEecCCcEEEEECCC----CceeccccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCC-
Q 013347          258 ILKWSPTGD-YFFAAKFDGTFYLWETNT----WTSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPS-  330 (444)
Q Consensus       258 ~~~~sp~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~-  330 (444)
                      +++|+|+++ +|++++.|+.|++||+++    +.......|...+.+++|+| ++++|++++. ++.+..|++...... 
T Consensus       209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBTTSCS
T ss_pred             EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCcccc
Confidence            999999999 899999999999999997    44444457999999999999 9999987654 467777776432110 


Q ss_pred             -cCCCcCCC--Cccccc-ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC--CCCC
Q 013347          331 -LDAHLLPV--DLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGDN  404 (444)
Q Consensus       331 -~~~~~~~~--~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~  404 (444)
                       +..+....  ....+. .+.....+..++|+|+|++  +++.|      +.|++||+.+++.+     ..+.+  |...
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d------~~i~iwd~~~~~~~-----~~l~~~~~~~~  354 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK------RTIDIYDANSGGLV-----HQLRDPNAAGI  354 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC------CCEEEEETTTCCEE-----EEECBTTBCSC
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC------CeEEEEecCCCcee-----eeecCCCCCce
Confidence             00000000  000000 0111113445666666666  55555      99999999988765     45555  4566


Q ss_pred             CcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          405 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       405 i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +..++|+|||++     |+.+ ++|.|.+|++.
T Consensus       355 ~~~~~~s~~g~~-----l~s~-sd~~i~iw~~~  381 (383)
T 3ei3_B          355 ISLNKFSPTGDV-----LASG-MGFNILIWNRE  381 (383)
T ss_dssp             CCEEEECTTSSE-----EEEE-ETTEEEEEECC
T ss_pred             EEEEEEecCccE-----EEEe-cCCcEEEEecC
Confidence            777799999886     6777 48999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-35  Score=279.66  Aligned_cols=290  Identities=15%  Similarity=0.126  Sum_probs=226.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCC-----CceeEEecCCCCCeEEEEEeeC----C---CeEEEEecCCcEE
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPN----G---GRSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~~~v~~l~~s~~----~---~~ll~~~~dg~v~  168 (444)
                      .|++++|+|  ++|++++.||.|+||++....     .....+ .+|...|++++|+|+    +   ..+++++.|+.|+
T Consensus        18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~   94 (397)
T 1sq9_A           18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL   94 (397)
T ss_dssp             CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred             CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence            399999999  899999999999999999732     033333 489999999999999    8   8899999999999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC----CCceEEEEEc----cCCCe-EEEEeeCCCeEEEE
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWG----PDGRY-LASASYESSSFTIW  239 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s----p~~~~-l~~~~~d~~~i~iw  239 (444)
                      +|++........                    .....+..|.    ...|.+++|+    |++++ |++++.|+ .|++|
T Consensus        95 iw~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-~i~iw  153 (397)
T 1sq9_A           95 FYRITREDETKK--------------------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-TTYIW  153 (397)
T ss_dssp             EEEEEECTTTCC--------------------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-CEEEE
T ss_pred             EEEccCCccccc--------------------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-cEEEE
Confidence            999984432111                    1234455562    3789999999    99999 99999998 99999


Q ss_pred             EcCC------CCce------ee-------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-ecccc---C---
Q 013347          240 DVAQ------GLGT------PI-------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS---T---  293 (444)
Q Consensus       240 d~~~------~~~~------~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~---~---  293 (444)
                      |+.+      ++..      .+       ..|...+.+++|+|++ +|++++.|+.|++||+++++. ..+..   |   
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence            9998      5443      33       2367889999999999 999999999999999998877 44556   7   


Q ss_pred             CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-------------CC-ceeEEEECC
Q 013347          294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-------------SQ-GIEKIAWDA  359 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-~v~~~~~sp  359 (444)
                      ...+.+++|+|++++|++++.++ ..+.+.+|+..          ....+..+.+             |. .|.+++|+|
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  301 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETE----------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND  301 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETT----------TCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred             CCccceEEECCCCCEEEEEecCC-CCceEEEEECC----------CCcccceeccCcccccccccccccCCcEEEEEECC
Confidence            89999999999999999774321 01445554432          2344555555             66 899999999


Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee------CC---------------CCCCcceeeeeCCCCCC
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR------GP---------------GDNPKPVAFSFHDKFKQ  418 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------~~---------------~~~i~~v~~spdg~~~~  418 (444)
                      ++++|++++.|      +.|++||+.+++.+     ..+.      +|               ...|++++|+|+|++.+
T Consensus       302 ~~~~l~~~~~d------g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~  370 (397)
T 1sq9_A          302 SGETLCSAGWD------GKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG  370 (397)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred             CCCEEEEEeCC------CeEEEEEcCCCcee-----EEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence            99999999988      99999999987665     4455      66               89999999999986432


Q ss_pred             C-----ceEEEEeccceeeeeeee
Q 013347          419 G-----PLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       419 ~-----~~l~~~~~~g~i~~~~~~  437 (444)
                      .     .+++.+..+|.|.+|++.
T Consensus       371 ~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          371 MGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             ccccccceEEEecCCCcEEEEEcC
Confidence            2     478889999999999875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=275.78  Aligned_cols=241  Identities=15%  Similarity=0.208  Sum_probs=192.0

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee---EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      .+|++++|+|++ .|++|+.||+|+|||+.+. +...   ....+|.+.|++++|+|+++.|++++.|++|++||+.+. 
T Consensus        83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~-~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-  159 (344)
T 4gqb_B           83 AGVADLTWVGER-GILVASDSGAVELWELDEN-ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-  159 (344)
T ss_dssp             SCEEEEEEETTT-EEEEEETTSEEEEEEECTT-SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred             CCEEEEEEeCCC-eEEEEECCCEEEEEeccCC-CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence            369999999996 5778999999999999874 3322   223489999999999999999999999999999999832 


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCCCceeee---cC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPIR---RG  252 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~~~~~~~---~~  252 (444)
                                              .++..+.+|. ..|.+++|+|++. +|++++.|+ +|++||+++++.....   .+
T Consensus       160 ------------------------~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~  213 (344)
T 4gqb_B          160 ------------------------VVLSSYRAHA-AQVTCVAASPHKDSVFLSCSEDN-RILLWDTRCPKPASQIGCSAP  213 (344)
T ss_dssp             ------------------------EEEEEECCCS-SCEEEEEECSSCTTEEEEEETTS-CEEEEETTSSSCEEECC----
T ss_pred             ------------------------cEEEEEcCcC-CceEEEEecCCCCCceeeecccc-ccccccccccceeeeeeccee
Confidence                                    3566788886 8999999999885 678999998 9999999998776543   34


Q ss_pred             CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC-EEEEEEcCCceEEEEEeecCCC
Q 013347          253 FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       253 ~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      ...+.+++|+|+ +++|++|+.|+.|++||+++++. ..+.+|...|++++|+|++. +|++ ++.++.++.|++     
T Consensus       214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~las-gs~D~~i~vwd~-----  287 (344)
T 4gqb_B          214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS-LSEDCSLAVLDS-----  287 (344)
T ss_dssp             CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEE-EETTSCEEEECT-----
T ss_pred             eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEE-EeCCCeEEEEEC-----
Confidence            567899999995 56789999999999999999887 56789999999999999985 4554 455566666654     


Q ss_pred             CcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                               ....+..+.+|. .|++++|+|+++ +|++++.|      ++|++|++.+..+.
T Consensus       288 ---------~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D------~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          288 ---------SLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWD------HQVVHHVVPTEPLP  335 (344)
T ss_dssp             ---------TCCEEEEECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECCC----
T ss_pred             ---------CCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC------CeEEEEECCCCCCC
Confidence                     223344567888 999999999986 57788888      99999999875543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.8e-36  Score=301.00  Aligned_cols=284  Identities=14%  Similarity=0.195  Sum_probs=224.4

Q ss_pred             ceEEEEEecCC-CeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g-~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      .|++++|+|++ ++|++|+.|++|+||++......   ......+|...|.+++|+|+++.+++++.|++|+|||+... 
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~-  462 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG-  462 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-
Confidence            49999999875 78999999999999999864221   12223589999999999999999999999999999999732 


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee----ecC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRG  252 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~----~~~  252 (444)
                                              .....+.+|. ..|.+++|+|++++|++++.|+ +|++||+.......+    ..|
T Consensus       463 ------------------------~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D~-~i~iwd~~~~~~~~~~~~~~~h  516 (694)
T 3dm0_A          463 ------------------------VSTRRFVGHT-KDVLSVAFSLDNRQIVSASRDR-TIKLWNTLGECKYTISEGGEGH  516 (694)
T ss_dssp             ------------------------EEEEEEECCS-SCEEEEEECTTSSCEEEEETTS-CEEEECTTSCEEEEECSSTTSC
T ss_pred             ------------------------cceeEEeCCC-CCEEEEEEeCCCCEEEEEeCCC-EEEEEECCCCcceeeccCCCCC
Confidence                                    3455677886 8999999999999999999998 999999875533333    246


Q ss_pred             CCCeEEEEEecCC--CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          253 FGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       253 ~~~v~~~~~sp~~--~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      ...|.+++|+|++  ..|++++.|++|++||+++++. ..+.+|...|++++|+|++++|++++ .++.+..|++.    
T Consensus       517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~~----  591 (694)
T 3dm0_A          517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLA----  591 (694)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEETT----
T ss_pred             CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC----
Confidence            7789999999986  5799999999999999998887 45778999999999999999998764 44677777753    


Q ss_pred             CcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee------------
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF------------  397 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~------------  397 (444)
                               +...+..+..+..|.+++|+|++.+|++++.       +.|+|||+++++.+.......            
T Consensus       592 ---------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (694)
T 3dm0_A          592 ---------EGKKLYSLEANSVIHALCFSPNRYWLCAATE-------HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGP  655 (694)
T ss_dssp             ---------TTEEEECCBCSSCEEEEEECSSSSEEEEEET-------TEEEEEETTTTEEEEEECCCCC-----------
T ss_pred             ---------CCceEEEecCCCcEEEEEEcCCCcEEEEEcC-------CCEEEEECCCCCChhhhcccccccccccccccc
Confidence                     2344455555568999999999998887764       569999999887653211100            


Q ss_pred             --eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          398 --IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       398 --~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                        ...+...+++++|||||++     |+.|..||.|++|++.
T Consensus       656 ~~~~~~~~~~~~l~~spdg~~-----l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          656 AATKRKVIYCTSLNWSADGST-----LFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             -----CCCCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred             ccCCceeEEeeeEEEcCCCCE-----EEEEcCCCeEEEEecc
Confidence              0011123578999999886     8889999999999874

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-36  Score=274.60  Aligned_cols=236  Identities=17%  Similarity=0.252  Sum_probs=202.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.+++|++++.++++++.|++|++||+.+ ++....+ ..|...+.+++|+|+++.+++++.++.|++|+++....   
T Consensus        82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~-~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~---  156 (321)
T 3ow8_A           82 GVVSVDISHTLPIAASSSLDAHIRLWDLEN-GKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK---  156 (321)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE---
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCC-CCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce---
Confidence            499999999999999999999999999987 4444444 47888899999999999999999999999999984332   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                            ...+..+. ..|.+++|+|++++|++++.|+ .|++||+++++... +..|...|.++
T Consensus       157 ----------------------~~~~~~~~-~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l  212 (321)
T 3ow8_A          157 ----------------------EYSLDTRG-KFILSIAYSPDGKYLASGAIDG-IINIFDIATGKLLHTLEGHAMPIRSL  212 (321)
T ss_dssp             ----------------------EEEEECSS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred             ----------------------eEEecCCC-ceEEEEEECCCCCEEEEEcCCC-eEEEEECCCCcEEEEEcccCCceeEE
Confidence                                  23344553 7899999999999999999998 99999999987665 55678899999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      +|+|++++|++++.|+.|++||+++++. ..+.+|...|.+++|+|++++|++++ .++.+..|++.             
T Consensus       213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~-------------  278 (321)
T 3ow8_A          213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVG-------------  278 (321)
T ss_dssp             EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-------------
T ss_pred             EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCC-------------
Confidence            9999999999999999999999998877 56778999999999999999998764 44667777653             


Q ss_pred             CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +...+.++.+|. .|.+++|+|+|++|++++.|      ++|+|||..
T Consensus       279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d------~~i~vwd~p  320 (321)
T 3ow8_A          279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD------QEIHIYDCP  320 (321)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------CCEEEEECC
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC------CeEEEEeCC
Confidence            345677788888 99999999999999999998      999999963

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.5e-36  Score=286.27  Aligned_cols=288  Identities=12%  Similarity=0.123  Sum_probs=214.8

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|+|++|+| ++++||+|+.||.|+|||+.+..........+|.+.|++|+|+| ++..|++++.||+|++||++.. ..
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-~~  199 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-IL  199 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-EE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-ce
Confidence            599999999 56799999999999999998743333333458999999999998 5678888889999999998722 11


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                      .                      .......+ ...+.+++|+|++++|++++.|+ .|++||++......+..|...|.+
T Consensus       200 ~----------------------~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~dg-~i~~wd~~~~~~~~~~~h~~~v~~  255 (435)
T 4e54_B          200 R----------------------VFASSDTI-NIWFCSLDVSASSRMVVTGDNVG-NVILLNMDGKELWNLRMHKKKVTH  255 (435)
T ss_dssp             E----------------------EEECCSSC-SCCCCCEEEETTTTEEEEECSSS-BEEEEESSSCBCCCSBCCSSCEEE
T ss_pred             e----------------------EEeccCCC-CccEEEEEECCCCCEEEEEeCCC-cEeeeccCcceeEEEecccceEEe
Confidence            1                      11111112 24678999999999999999998 999999987766667789999999


Q ss_pred             EEEecCCC-eEEEEecCCcEEEEECCCCcee----ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          259 LKWSPTGD-YFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       259 ~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      ++|+|+++ +|++++.|+.|++||+++.+..    ...+|...|++++|+|+|++|++++ .++.+..|++...      
T Consensus       256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~------  328 (435)
T 4e54_B          256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQW------  328 (435)
T ss_dssp             EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSS------
T ss_pred             eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCC------
Confidence            99999876 6789999999999999886642    2347899999999999999999765 4467777775431      


Q ss_pred             CcCCCCcccccccccC-------CceeEEEECCCCCEEEEEecCCCc------cccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          334 HLLPVDLPDIVSLTGS-------QGIEKIAWDASGERLAVSYKGGDD------IYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~d~~~------~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                             .....+..|       ..+....|+|++.++++++.+...      ..++.|++||..+++.+.    ....+
T Consensus       329 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~----~l~~~  397 (435)
T 4e54_B          329 -------DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC----QLYDP  397 (435)
T ss_dssp             -------SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE----EECCS
T ss_pred             -------ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE----EEeCC
Confidence                   111111111       133456677777777766543210      012689999999988762    22346


Q ss_pred             CCCCCcce-eeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          401 PGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       401 ~~~~i~~v-~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      |...|.++ +|||||++     |+.| +++.|++|++-
T Consensus       398 ~~~~v~s~~~fspdg~~-----lasg-~d~~i~iW~~~  429 (435)
T 4e54_B          398 ESSGISSLNEFNPMGDT-----LASA-MGYHILIWSQQ  429 (435)
T ss_dssp             SCCCCCCEEEECTTSSC-----EEEE-CSSEEEECCCC
T ss_pred             CCCcEEEEEEECCCCCE-----EEEE-cCCcEEEEECC
Confidence            88889888 69999986     6666 47899999874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=287.98  Aligned_cols=288  Identities=14%  Similarity=0.195  Sum_probs=230.3

Q ss_pred             ceEEEEEecCCC-eEEEE----------ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347          101 DLQGVSWHQHKH-IVAFI----------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (444)
Q Consensus       101 ~v~~~~~sp~g~-~la~~----------~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~i  169 (444)
                      .|.+++|+|+++ +||++          +.|+.|+||++.+...........|...|.+++|+|++..|++++.|+.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            588999999997 89998          8899999999987422112222468899999999999888999999999999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCC---
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGL---  245 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~---  245 (444)
                      |++......                     ......+.+|. ..|.+++|+|+ +++|++++.|+ .|++||+.+++   
T Consensus        94 w~~~~~~~~---------------------~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           94 YSTNEANNA---------------------INSMARFSNHS-SSVKTVKFNAKQDNVLASGGNNG-EIFIWDMNKCTESP  150 (416)
T ss_dssp             ECCSSTTSC---------------------CCEEEECCCSS-SCCCEEEECSSSTTBEEEECSSS-CEEBCBTTTTSSCT
T ss_pred             eeccccccc---------------------ccchhhccCCc-cceEEEEEcCCCCCEEEEEcCCC-eEEEEECCCCcccc
Confidence            999842111                     11345567775 89999999998 89999999998 99999999876   


Q ss_pred             ---cee----eecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCcee-ccccC------CCceeEEEECCCCC-EE
Q 013347          246 ---GTP----IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSST------SGFVTGATWDPEGR-MI  309 (444)
Q Consensus       246 ---~~~----~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~------~~~v~~~~~sp~g~-~l  309 (444)
                         ...    ...|...|.+++|+|+ +++|++++.|+.|++||+++++.. .+..+      ...+.+++|+|++. ++
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  230 (416)
T 2pm9_A          151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV  230 (416)
T ss_dssp             TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred             ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence               222    2457789999999999 788999999999999999998763 33333      78899999999985 56


Q ss_pred             EEEEcCCc---eEEEEEeecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEE
Q 013347          310 LLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       310 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      +++ ..++   .+..|++..            ....+..+. +|. .|.+++|+| ++++|++++.|      +.|++||
T Consensus       231 ~~~-~~d~~~~~i~~~d~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd  291 (416)
T 2pm9_A          231 ATA-TGSDNDPSILIWDLRN------------ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWN  291 (416)
T ss_dssp             EEE-ECCSSSCCCCEEETTS------------TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEEC
T ss_pred             EEE-ECCCCCceEEEEeCCC------------CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEee
Confidence            655 4444   666666532            123455666 677 899999999 99999999998      9999999


Q ss_pred             cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      +++++.+     ..+.+|...|.+++|+|++..    +++.+..+|.|.+|++.-.
T Consensus       292 ~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~----~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          292 PESAEQL-----SQFPARGNWCFKTKFAPEAPD----LFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             SSSCCEE-----EEEECSSSCCCCEEECTTCTT----EEEECCSSSEEEEEESCCC
T ss_pred             CCCCccc-----eeecCCCCceEEEEECCCCCC----EEEEEecCCcEEEEEccCC
Confidence            9987665     567899999999999999832    4888889999999998643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-35  Score=266.11  Aligned_cols=244  Identities=16%  Similarity=0.255  Sum_probs=191.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      |++++|+|+|++||+|+.|++|+||++.... +....+ .+|.+.|++++|+++  +..|++++.|++|++||++...  
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~--   88 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR--   88 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC--
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc--
Confidence            9999999999999999999999999997532 333344 699999999999863  6788889999999999997332  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCC---ceeeecCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRRGF  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~---~~~~~~~~  253 (444)
                                           +.....+.+|. ..|.+++|+|+  +++|++++.|+ +|++||++++.   ...+..|.
T Consensus        89 ---------------------~~~~~~~~~h~-~~v~~v~~~p~~~g~~l~s~s~d~-~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           89 ---------------------WSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSDG-KVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             ---------------------BCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETTS-EEEEEEBCSSSCBCCEEEECCS
T ss_pred             ---------------------eEEEEEeecCC-CceeEEEeCcCCCCcEEEEEECCC-cEEEEEecCCCceeeeeeeccc
Confidence                                 11223355664 78999999997  89999999998 99999998763   23456788


Q ss_pred             CCeEEEEEecC-------------CCeEEEEecCCcEEEEECCCCc----e-eccccCCCceeEEEECCCC---CEEEEE
Q 013347          254 GGLSILKWSPT-------------GDYFFAAKFDGTFYLWETNTWT----S-EPWSSTSGFVTGATWDPEG---RMILLA  312 (444)
Q Consensus       254 ~~v~~~~~sp~-------------~~~l~~~~~d~~v~iwd~~~~~----~-~~~~~~~~~v~~~~~sp~g---~~l~~~  312 (444)
                      ..|.+++|+|+             +++|++|+.|++|++||+++++    . ..+.+|...|.+++|+|++   .+|+++
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            99999999997             5789999999999999998765    2 3567899999999999995   666654


Q ss_pred             EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                       +.++.+..|++.......        ...+.....|. .|.+++|+|+|++||+++.|      ++|+||+...
T Consensus       226 -s~D~~v~iWd~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D------~~v~lw~~~~  285 (297)
T 2pm7_B          226 -SQDRTCIIWTQDNEQGPW--------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL  285 (297)
T ss_dssp             -ETTSCEEEEEESSTTSCC--------EEEESSSSCCSSCEEEEEECSSSCCEEEEETT------SCEEEEEECT
T ss_pred             -ECCCcEEEEEeCCCCCcc--------ceeeeecccCCCcEEEEEECCCCCEEEEEcCC------CcEEEEEECC
Confidence             556778887764311000        00011113444 89999999999999999998      9999999863

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-36  Score=281.49  Aligned_cols=237  Identities=16%  Similarity=0.307  Sum_probs=203.7

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|++++|++|+.|++|+|||+.+ ......+ .+|...|.+++|+|++..+++++.|++|++||+...    
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~-~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----  224 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----  224 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTS-SCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----
Confidence            4799999999999999999999999999986 4444443 589999999999999999999999999999999833    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                           .+...+.+|. ..|.++.|+|++++|++++.|+ +|++||+.+++... +..|...|.+
T Consensus       225 ---------------------~~~~~~~~h~-~~v~~~~~~~~g~~l~s~s~D~-~v~vwd~~~~~~~~~~~~h~~~v~~  281 (410)
T 1vyh_C          225 ---------------------YCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVEC  281 (410)
T ss_dssp             ---------------------CEEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             ---------------------cEEEEEeCCC-ccEEEEEECCCCCEEEEEcCCC-eEEEEECCCCceeeEecCCCceEEE
Confidence                                 2455677785 7999999999999999999998 99999999887665 5578899999


Q ss_pred             EEEecC--------------------CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          259 LKWSPT--------------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       259 ~~~sp~--------------------~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      ++|+|+                    +.+|++|+.|+.|++||+++++. ..+.+|...|++++|+|++++|++++ .++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~  360 (410)
T 1vyh_C          282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDK  360 (410)
T ss_dssp             EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-TTT
T ss_pred             EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence            999996                    67899999999999999999887 55778999999999999999999764 446


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      .++.|++.             ....+.++.+|. .|++++|+|++++|++++.|      ++|++|+++
T Consensus       361 ~i~vwd~~-------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D------~~i~vW~~r  410 (410)
T 1vyh_C          361 TLRVWDYK-------------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWECR  410 (410)
T ss_dssp             EEEEECCT-------------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC--
T ss_pred             eEEEEECC-------------CCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Confidence            66666642             345567788888 99999999999999999998      999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.6e-35  Score=278.53  Aligned_cols=310  Identities=11%  Similarity=0.146  Sum_probs=218.3

Q ss_pred             CccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCC----------ceeEEecCCC------------CCeEEEEEee
Q 013347           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK----------DACILTSDSQ------------RDVKVLEWRP  153 (444)
Q Consensus        96 ~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~----------~~~~~~~~~~------------~~v~~l~~s~  153 (444)
                      +-....|++++|+|+|++||+|+.||.|+||++.+...          ....+ .+|.            ..|++++|+|
T Consensus        25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcC
Confidence            33456799999999999999999999999999986321          12333 4887            8899999999


Q ss_pred             CC--CeEEEEecCCcEEEEecCCCCCcceeec-----cccc---cccccccCC--CCce----EEEEEe-eccCCCceEE
Q 013347          154 NG--GRSLSVGCKGGICIWAPSYPGNAASVRS-----GAAS---FLGALSRGP--GTRW----TLVDFL-RSQNGEQITA  216 (444)
Q Consensus       154 ~~--~~ll~~~~dg~v~iw~~~~~~~~~~~~~-----~~~~---~~~~~~~~~--~~~~----~~~~~~-~~~~~~~v~~  216 (444)
                      ++  ..+++++.|+.|++|++...........     +...   ....+....  ...+    .....+ .+|. ..|.+
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~  182 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT-YHINS  182 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS-SCCCE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC-cceEE
Confidence            97  6899999999999999874221100000     0000   000000000  0001    112233 4564 89999


Q ss_pred             EEEccCCCeEEEEeeCCCeEEEEEcCC-CCcee--------eecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCc
Q 013347          217 LSWGPDGRYLASASYESSSFTIWDVAQ-GLGTP--------IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWT  286 (444)
Q Consensus       217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~--------~~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~  286 (444)
                      ++|+|++++|+++ .|+ .|++||++. ++...        +..|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus       183 ~~~~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDL-RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             EEECTTSSEEEEE-CSS-EEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEcCCCCEEEEe-CCC-eEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            9999999999998 787 999999984 33333        33678899999999998 999999999999999999887


Q ss_pred             e-----eccccCCC------------ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347          287 S-----EPWSSTSG------------FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  349 (444)
Q Consensus       287 ~-----~~~~~~~~------------~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (444)
                      .     ..+..|..            .|.+++|+|++++|++++.  +.+..|++..            ....+..+.+|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~------------~~~~~~~~~~~  326 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM------------ENRPVETYQVH  326 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC------------CSSCSCCEESC
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC------------Cccccceeecc
Confidence            5     44556654            8999999999999997754  6677776532            13344455555


Q ss_pred             Cc----------------eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee-----------------
Q 013347          350 QG----------------IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-----------------  396 (444)
Q Consensus       350 ~~----------------v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~-----------------  396 (444)
                      ..                +..++|+|++++|++++.|      |.|++||+.+++.+......                 
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN------NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCAS  400 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST------TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECS
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccC------CEEEEEEcCCCcceeeeecccccccccccCCcccccc
Confidence            42                3349999999999999998      99999999998765321110                 


Q ss_pred             ----------eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          397 ----------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       397 ----------~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                                ....+...|..++|+|+|++     |+++.+++ +++|.
T Consensus       401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~-----la~~~~~~-~~~~~  443 (447)
T 3dw8_B          401 GKRKKDEISVDSLDFNKKILHTAWHPKENI-----IAVATTNN-LYIFQ  443 (447)
T ss_dssp             SCCCTTCEEGGGCCTTSCCCEEEECSSSSE-----EEEECSSC-EEEEE
T ss_pred             CCcccccccccccccCCceeEEEECCCCCE-----EEEEecce-eeeec
Confidence                      00123456889999999875     78887665 55554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-35  Score=268.55  Aligned_cols=244  Identities=15%  Similarity=0.162  Sum_probs=194.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+|++|++++.|++|+|||+.+ ++....+ .+|...|.+++|+|++..+++++.|++|++||++.      
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------  138 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVAT-GETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------  138 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCC-CCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Confidence            399999999999999999999999999987 4444444 58999999999999988999999999999999861      


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC------CCeEEEEeeCCCeEEEEEcCCCCcee-eecCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD------GRYLASASYESSSFTIWDVAQGLGTP-IRRGF  253 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~  253 (444)
                                          .+...+.+|. ..|.+++|+|.      +..|++++.|+ .|++||+++.+... +..|.
T Consensus       139 --------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~h~  196 (319)
T 3frx_A          139 --------------------QCLATLLGHN-DWVSQVRVVPNEKADDDSVTIISAGNDK-MVKAWNLNQFQIEADFIGHN  196 (319)
T ss_dssp             --------------------CEEEEECCCS-SCEEEEEECCC------CCEEEEEETTS-CEEEEETTTTEEEEEECCCC
T ss_pred             --------------------CeEEEEeccC-CcEEEEEEccCCCCCCCccEEEEEeCCC-EEEEEECCcchhheeecCCC
Confidence                                1344567775 79999999985      44899999998 99999999876554 56788


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      ..|.+++|+|++++|++++.|+.|++||+.+++......+...+.+++|+|++.+++++....  +..|.+....   . 
T Consensus       197 ~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~~---~-  270 (319)
T 3frx_A          197 SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQY---L-  270 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTE--EEEEEETTEE---E-
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcCe---e-
Confidence            999999999999999999999999999999988755445567899999999999999776543  4444432110   0 


Q ss_pred             CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                       +.............+. .+.+++|+|||++|++++.|      +.|+|||+.++
T Consensus       271 -~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D------g~i~vWd~~t~  318 (319)
T 3frx_A          271 -VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD------NVIRVWQVMTA  318 (319)
T ss_dssp             -EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEEC
T ss_pred             -eeccCccccccccCcCcceeEEEECCCCCEEEEeecC------ceEEEEEEeec
Confidence             0000000011112233 78999999999999999998      99999998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.7e-35  Score=274.11  Aligned_cols=291  Identities=13%  Similarity=0.169  Sum_probs=228.6

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ..+|++++|+|++++||+++.|+.|++|++.+ ++  ....+ .+|...|.+++|+|+++.+++++.|+.|++||+....
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHEL-KEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEET-TEEEEEEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CcEEeeeee-cCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            34699999999999999999999999999987 33  33333 5899999999999998899999999999999997321


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc----eee-ec
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG----TPI-RR  251 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~----~~~-~~  251 (444)
                                             +.....+..|. ..|.+++|+|++++|++++.|+ .|++||++.+..    ... ..
T Consensus        86 -----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~~~~~~~~~~~  140 (372)
T 1k8k_C           86 -----------------------WKPTLVILRIN-RAARCVRWAPNEKKFAVGSGSR-VISICYFEQENDWWVCKHIKKP  140 (372)
T ss_dssp             -----------------------EEEEEECCCCS-SCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTTEEEEEEECTT
T ss_pred             -----------------------eeeeEEeecCC-CceeEEEECCCCCEEEEEeCCC-EEEEEEecCCCcceeeeeeecc
Confidence                                   11222334554 7899999999999999999998 999999998763    222 34


Q ss_pred             CCCCeEEEEEecCCCeEEEEecCCcEEEEECC------------------CCce-eccccCCCceeEEEECCCCCEEEEE
Q 013347          252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETN------------------TWTS-EPWSSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~------------------~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      |...|.+++|+|++++|++++.|+.|++||++                  .++. ..+..|...+.+++|+|++++|+++
T Consensus       141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  220 (372)
T 1k8k_C          141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  220 (372)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence            67899999999999999999999999999964                  3444 4456889999999999999998876


Q ss_pred             EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC--CCe
Q 013347          313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--TPL  389 (444)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~--~~~  389 (444)
                      + .++.+..|++.             ....+..+..|. .|.+++|+|++++|+++ .|      +.|++|++..  ++.
T Consensus       221 ~-~d~~i~i~d~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~i~~~~~~~~~~  279 (372)
T 1k8k_C          221 S-HDSTVCLADAD-------------KKMAVATLASETLPLLAVTFITESSLVAAG-HD------CFPVLFTYDSAAGKL  279 (372)
T ss_dssp             E-TTTEEEEEEGG-------------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TT------SSCEEEEEETTTTEE
T ss_pred             e-CCCEEEEEECC-------------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eC------CeEEEEEccCcCceE
Confidence            5 45677777764             234566777777 89999999999988887 66      8999999987  421


Q ss_pred             EE---------------------------EEEe------eee-eCCCCCCcceeee-eCCCCCCCceEEEEeccceeeee
Q 013347          390 IS---------------------------LSLI------GFI-RGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       390 ~~---------------------------~~~~------~~~-~~~~~~i~~v~~s-pdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ..                           ....      ..+ .+|...|++++|+ ++|  ..+.+|+.|..||.|++|
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g--~~~~~l~s~~~Dg~i~~W  357 (372)
T 1k8k_C          280 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK--AKCSQFCTTGMDGGMSIW  357 (372)
T ss_dssp             EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT--TSCSEEEEEETTSEEEEE
T ss_pred             EEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCC--cceeeEEEecCCCceEEE
Confidence            10                           0000      223 4899999999977 554  011358888899999999


Q ss_pred             eeeee
Q 013347          435 PLIFR  439 (444)
Q Consensus       435 ~~~~~  439 (444)
                      ++...
T Consensus       358 ~~~~~  362 (372)
T 1k8k_C          358 DVRSL  362 (372)
T ss_dssp             EHHHH
T ss_pred             EecCh
Confidence            98543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-35  Score=274.50  Aligned_cols=294  Identities=16%  Similarity=0.220  Sum_probs=227.7

Q ss_pred             ceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEe----cCCCCCeEEEEEeeC----CCeEEEEecCCcEE
Q 013347          101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILT----SDSQRDVKVLEWRPN----GGRSLSVGCKGGIC  168 (444)
Q Consensus       101 ~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~v~~l~~s~~----~~~ll~~~~dg~v~  168 (444)
                      .|++++|+|+    ...+++++.++.|+||++.+. .....+.    ..|...|++++|+|+    +..+++++.||.|+
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~   98 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR   98 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence            3999999984    455666677889999999873 3322221    137789999999999    55788888899999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      +||+...                         .....+.+|. ..|.+++|+| ++++|++++.|+ .|++||+++++..
T Consensus        99 v~d~~~~-------------------------~~~~~~~~~~-~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~  151 (366)
T 3k26_A           99 IINPITM-------------------------QCIKHYVGHG-NAINELKFHPRDPNLLLSVSKDH-ALRLWNIQTDTLV  151 (366)
T ss_dssp             EECTTTC-------------------------CEEEEEESCC-SCEEEEEECSSCTTEEEEEETTS-CEEEEETTTTEEE
T ss_pred             EEEchhc-------------------------eEeeeecCCC-CcEEEEEECCCCCCEEEEEeCCC-eEEEEEeecCeEE
Confidence            9999833                         2344566775 8999999999 999999999998 9999999988776


Q ss_pred             eee----cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc----------------------------cCC
Q 013347          248 PIR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS----------------------------STS  294 (444)
Q Consensus       248 ~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~----------------------------~~~  294 (444)
                      ...    .|...|.+++|+|++++|++++.|+.|++||+++++.. .+.                            .|.
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (366)
T 3k26_A          152 AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR  231 (366)
T ss_dssp             EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS
T ss_pred             EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc
Confidence            654    68899999999999999999999999999999986542 122                            288


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc-CCCCcccccccccCC-ceeEEEECCC--CCEEEEEecC
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-LPVDLPDIVSLTGSQ-GIEKIAWDAS--GERLAVSYKG  370 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~v~~~~~spd--g~~l~~~~~d  370 (444)
                      ..|.+++|+  +++++++ +.++.+..|++........... .......+..+..|. .|.+++|+|+  +++|++++.|
T Consensus       232 ~~v~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          232 NYVDCVRWL--GDLILSK-SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             SCCCEEEEE--TTEEEEE-CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred             ceEEEEEEc--CCEEEEE-ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence            999999998  6677755 4567788888754322111100 011123456667777 8999999999  9999999988


Q ss_pred             CCccccceEEEEEcCCCCeEEEEEeeeeeCC--CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          371 GDDIYKGLIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       371 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                            |.|++||+.+++... .....+.+|  ...|++++|+|+|++     |+.+..+|.|.+|++.
T Consensus       309 ------g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          309 ------GKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFSRDSSI-----LIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ------SCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEECTTSSE-----EEEEETTSEEEEEEC-
T ss_pred             ------CcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeCCCCCe-----EEEEeCCCEEEEEEec
Confidence                  999999999876431 122356677  789999999999886     8888899999999873

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-35  Score=275.61  Aligned_cols=282  Identities=17%  Similarity=0.314  Sum_probs=217.7

Q ss_pred             cceEEEEEecCCC-eEEEEECCCeEEEEEc----cCCCC------ceeEEec---------CCCCCeEEEEEeeCCCeEE
Q 013347          100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDY----EDSGK------DACILTS---------DSQRDVKVLEWRPNGGRSL  159 (444)
Q Consensus       100 ~~v~~~~~sp~g~-~la~~~~dg~v~iw~~----~~~~~------~~~~~~~---------~~~~~v~~l~~s~~~~~ll  159 (444)
                      ..|++++|+|+++ +||+++.||.|++|++    .+ +.      ....+..         +|.+.|++++|+|+++.++
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  124 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV  124 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence            3699999999999 9999999999999999    66 33      2222221         1677999999999988899


Q ss_pred             EEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEE
Q 013347          160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIW  239 (444)
Q Consensus       160 ~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iw  239 (444)
                      +++.||.|++|+.. ..                         ....+..|. ..|.+++|+|++++|++++.|+ .|++|
T Consensus       125 ~~~~dg~i~i~~~~-~~-------------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~iw  176 (425)
T 1r5m_A          125 TGVENGELRLWNKT-GA-------------------------LLNVLNFHR-APIVSVKWNKDGTHIISMDVEN-VTILW  176 (425)
T ss_dssp             EEETTSCEEEEETT-SC-------------------------EEEEECCCC-SCEEEEEECTTSSEEEEEETTC-CEEEE
T ss_pred             EEeCCCeEEEEeCC-CC-------------------------eeeeccCCC-ccEEEEEECCCCCEEEEEecCC-eEEEE
Confidence            99999999999943 11                         233445554 6777777777777777777776 77777


Q ss_pred             EcCCCCc--------------------------------------------------------e-eeecCCCCeEEEEEe
Q 013347          240 DVAQGLG--------------------------------------------------------T-PIRRGFGGLSILKWS  262 (444)
Q Consensus       240 d~~~~~~--------------------------------------------------------~-~~~~~~~~v~~~~~s  262 (444)
                      |+.+++.                                                        . .+..|...|.+++|+
T Consensus       177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  256 (425)
T 1r5m_A          177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN  256 (425)
T ss_dssp             ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred             ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence            7755422                                                        1 123467789999999


Q ss_pred             cCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347          263 PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       263 p~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      |++++|++++.|+.|++||+++++. ..+..|...+.+++|+|++ +++++ +.++.+..|++.             ...
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~~d~~i~i~d~~-------------~~~  321 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISC-SMDGSVRLWSLK-------------QNT  321 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEE-ETTSEEEEEETT-------------TTE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEE-eCCCcEEEEECC-------------CCc
Confidence            9999999999999999999998776 4566799999999999999 66655 445677777653             344


Q ss_pred             cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe---------------EEEEEeeeeeCCCC--
Q 013347          342 DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL---------------ISLSLIGFIRGPGD--  403 (444)
Q Consensus       342 ~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~~~~~~--  403 (444)
                      .+..+..|. .|.+++|+|++++|++++.|      +.|++||+.+++.               ....++..+.+|..  
T Consensus       322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (425)
T 1r5m_A          322 LLALSIVDGVPIFAGRISQDGQKYAVAFMD------GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDND  395 (425)
T ss_dssp             EEEEEECTTCCEEEEEECTTSSEEEEEETT------SCEEEEECHHHHC--------------CEECCEEEEECCTTCCC
T ss_pred             EeEecccCCccEEEEEEcCCCCEEEEEECC------CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCC
Confidence            556667777 89999999999999999988      9999999987550               00113467788866  


Q ss_pred             CCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          404 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       404 ~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .|.+++|+|++++     |+++..+|.|.+|++
T Consensus       396 ~v~~~~~s~~~~~-----l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          396 YIFDLSWNCAGNK-----ISVAYSLQEGSVVAI  423 (425)
T ss_dssp             CEEEEEECTTSSE-----EEEEESSSCCEEEEC
T ss_pred             ceEEEEccCCCce-----EEEEecCceEEEEee
Confidence            9999999999885     888889999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-34  Score=264.89  Aligned_cols=236  Identities=12%  Similarity=0.181  Sum_probs=198.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ..|.+++|+|++++|++++.|+.+++|++.+...  .......+|.+.|.++.|+++ +.+++++.|++|++||+...  
T Consensus        98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~--  174 (340)
T 1got_B           98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETG--  174 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTT--
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCC--
Confidence            4699999999999999999999999999986421  122223589999999999998 57999999999999999832  


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                             .....+.+|. ..|.+++|+|++++|++++.|+ .|++||++++.... +..|...|
T Consensus       175 -----------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~sg~~d~-~v~~wd~~~~~~~~~~~~h~~~v  229 (340)
T 1got_B          175 -----------------------QQTTTFTGHT-GDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESDI  229 (340)
T ss_dssp             -----------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCSEEEEECCCSSCE
T ss_pred             -----------------------cEEEEEcCCC-CceEEEEECCCCCEEEEEeCCC-cEEEEECCCCeeEEEEcCCcCCE
Confidence                                   3455677785 8999999999999999999998 99999999887665 55688999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      .+++|+|++++|++++.|++|++||+++++.....   .+...|.+++|+|+|+++++++. ++.+..|++.        
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~--------  300 (340)
T 1got_B          230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDAL--------  300 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETT--------
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcc--------
Confidence            99999999999999999999999999988764322   33457999999999999997754 4666666642        


Q ss_pred             CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          334 HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                           ....+..+.+|. .|.+++|+|+|++|++++.|      ++|+|||
T Consensus       301 -----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D------~~i~iWd  340 (340)
T 1got_B          301 -----KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD------SFLKIWN  340 (340)
T ss_dssp             -----TCCEEEEEECCSSCEEEEEECTTSSCEEEEETT------SCEEEEC
T ss_pred             -----cCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCC------ccEEecC
Confidence                 344566788888 99999999999999999998      9999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=278.13  Aligned_cols=296  Identities=13%  Similarity=0.150  Sum_probs=227.5

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCC--CCceeEEecCCCCCeEEEEEeeC-CCeEEEEecCCcEEEEecCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--~~~~~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      ...|++++|+|++++|++++.||.|++|++...  +........+|...|.+++|+|+ +..+++++.|+.|++||+...
T Consensus        67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            446999999999999999999999999999862  22233334689999999999998 777888888999999999855


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEEcCCCCceeeec-C-
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRR-G-  252 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~-  252 (444)
                      .........                .....+..|. ..|.+++|+|+ +.+|++++.|+ .|++||+++++...... + 
T Consensus       147 ~~~~~~~~~----------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~  208 (416)
T 2pm9_A          147 TESPSNYTP----------------LTPGQSMSSV-DEVISLAWNQSLAHVFASAGSSN-FASIWDLKAKKEVIHLSYTS  208 (416)
T ss_dssp             SSCTTTCCC----------------BCCCCSCCSS-CCCCEEEECSSCTTEEEEESSSS-CEEEEETTTTEEEEEECCCC
T ss_pred             ccccccccc----------------cccccccCCC-CCeeEEEeCCCCCcEEEEEcCCC-CEEEEECCCCCcceEEeccc
Confidence            411000000                0001234454 78999999998 78999999998 99999999887665443 3 


Q ss_pred             -----CCCeEEEEEecCC-CeEEEEecCC---cEEEEECCCCc-e-eccc-cCCCceeEEEECC-CCCEEEEEEcCCceE
Q 013347          253 -----FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWT-S-EPWS-STSGFVTGATWDP-EGRMILLAFAGSLTL  319 (444)
Q Consensus       253 -----~~~v~~~~~sp~~-~~l~~~~~d~---~v~iwd~~~~~-~-~~~~-~~~~~v~~~~~sp-~g~~l~~~~~~~~~~  319 (444)
                           ...+.+++|+|++ .+|++++.|+   .|++||+++++ . ..+. .|...|.+++|+| ++++|++++. ++.+
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v  287 (416)
T 2pm9_A          209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTV  287 (416)
T ss_dssp             CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEE
T ss_pred             cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCE
Confidence                 6789999999997 6889999998   99999999863 3 4555 7999999999999 8888887644 4566


Q ss_pred             EEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeEEEE----
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLS----  393 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~----  393 (444)
                      ..|++.             +...+..+.+|. .|.+++|+|++ ++|++++.|      +.|++|++.+.......    
T Consensus       288 ~~wd~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~  348 (416)
T 2pm9_A          288 LLWNPE-------------SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD------NKIEVQTLQNLTNTLDEQETE  348 (416)
T ss_dssp             EEECSS-------------SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS------SEEEEEESCCCCCSSCC----
T ss_pred             EEeeCC-------------CCccceeecCCCCceEEEEECCCCCCEEEEEecC------CcEEEEEccCCCCCccccccc
Confidence            666542             345567777887 89999999999 899999988      99999999875432100    


Q ss_pred             ------Ee--------------------eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          394 ------LI--------------------GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       394 ------~~--------------------~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                            ..                    .....|...+.+++|||||++     |+++..+|.|.+|++.
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-----la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          349 TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL-----VQITPDGKGVSITNPK  413 (416)
T ss_dssp             ------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE-----ECBCTTSSCBCCBCCC
T ss_pred             ccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE-----EEEeCCCCeEEEEEec
Confidence                  00                    001125677889999999986     7888899999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-34  Score=261.05  Aligned_cols=287  Identities=14%  Similarity=0.100  Sum_probs=228.9

Q ss_pred             cccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEE
Q 013347           71 EGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLE  150 (444)
Q Consensus        71 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~  150 (444)
                      ..+...++||.+.                  |++++| |++++|++++.||.|++|++.+ +.....+ ..|...|.+++
T Consensus         8 ~~~~~~l~~h~~~------------------v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-~~~~~~~-~~~~~~v~~~~   66 (313)
T 3odt_A            8 YQLSATLKGHDQD------------------VRDVVA-VDDSKVASVSRDGTVRLWSKDD-QWLGTVV-YTGQGFLNSVC   66 (313)
T ss_dssp             CEEEEEECCCSSC------------------EEEEEE-EETTEEEEEETTSEEEEEEESS-SEEEEEE-EECSSCEEEEE
T ss_pred             HHHHHHhhCCCCC------------------cEEEEe-cCCCEEEEEEcCCcEEEEECCC-CEEEEEe-ecCCccEEEEE
Confidence            3455667788665                  999999 9999999999999999999976 4434443 58899999999


Q ss_pred             EeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347          151 WRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS  230 (444)
Q Consensus       151 ~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  230 (444)
                      |+|++..+++++.|+.|++|++.......                      ....+.+|. ..|.+++|  +++++++++
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~----------------------~~~~~~~~~-~~i~~~~~--~~~~l~~~~  121 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGED----------------------PLYTLIGHQ-GNVCSLSF--QDGVVISGS  121 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSC----------------------C-CEECCCS-SCEEEEEE--ETTEEEEEE
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCC----------------------cccchhhcc-cCEEEEEe--cCCEEEEEe
Confidence            99999999999999999999997432211                      223456665 89999999  678999999


Q ss_pred             eCCCeEEEEEcCCCCceeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCceecccc-CCCceeEEEECCCCCE
Q 013347          231 YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSS-TSGFVTGATWDPEGRM  308 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~sp~g~~  308 (444)
                      .|+ .|++|| .......+..|...+.+++|+| +++++++++.|+.|++||.... ...+.. |...+.+++|+|++. 
T Consensus       122 ~d~-~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-  197 (313)
T 3odt_A          122 WDK-TAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-  197 (313)
T ss_dssp             TTS-EEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-
T ss_pred             CCC-CEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-
Confidence            998 999999 2222334667889999999998 8999999999999999994332 233444 889999999999998 


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      ++++ +.++.+..|++.             ....+..+.+|. .|.+++|+|++ .|++++.|      +.|++||+.++
T Consensus       198 ~~~~-~~dg~i~i~d~~-------------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~v~iwd~~~~  256 (313)
T 3odt_A          198 FISC-SNDGLIKLVDMH-------------TGDVLRTYEGHESFVYCIKLLPNG-DIVSCGED------RTVRIWSKENG  256 (313)
T ss_dssp             EEEE-ETTSEEEEEETT-------------TCCEEEEEECCSSCEEEEEECTTS-CEEEEETT------SEEEEECTTTC
T ss_pred             EEEc-cCCCeEEEEECC-------------chhhhhhhhcCCceEEEEEEecCC-CEEEEecC------CEEEEEECCCC
Confidence            5544 445677777653             345566777787 89999999999 58888888      99999999988


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      +..     ..+..|...|.+++|+|+|++      .++..+|.|.+|++.-.
T Consensus       257 ~~~-----~~~~~~~~~i~~~~~~~~~~~------~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          257 SLK-----QVITLPAISIWSVDCMSNGDI------IVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             CEE-----EEEECSSSCEEEEEECTTSCE------EEEETTSCEEEEESCGG
T ss_pred             cee-----EEEeccCceEEEEEEccCCCE------EEEeCCCcEEEEeCCCC
Confidence            765     567788889999999999873      35778999999998643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=286.41  Aligned_cols=300  Identities=14%  Similarity=0.070  Sum_probs=213.7

Q ss_pred             ccceEEEEEecCC---------CeEEE-------------------EECCCeEEEEEccCCCCcee---EEecCCCCCeE
Q 013347           99 EVDLQGVSWHQHK---------HIVAF-------------------ISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVK  147 (444)
Q Consensus        99 ~~~v~~~~~sp~g---------~~la~-------------------~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~v~  147 (444)
                      +..|++++|+|++         ++||+                   ++.|++|+||++.+ ++...   ....+|.+.|.
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEET-TTCCEEEEEEEEECCCSEE
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEE
Confidence            3467888888876         56665                   45788999999987 33221   11236788999


Q ss_pred             EEEEeeC------CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347          148 VLEWRPN------GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (444)
Q Consensus       148 ~l~~s~~------~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (444)
                      +++|+|+      ++.|++++.||+|+|||+............              .-.....+.+|. ..|++++|++
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~--------------~~~p~~~l~~h~-~~v~sv~~s~  276 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM--------------CEKPSLTLSLAD-SLITTFDFLS  276 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC--------------CCSCSEEECCTT-TCEEEEEESS
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee--------------ecCceEEEEcCC-CCEEEEEecC
Confidence            9999997      457777888999999999754321100000              000112466775 8999999998


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEE--EEecCC-CeEEEEecCCcEEEEECCCCce-eccccCC-
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSIL--KWSPTG-DYFFAAKFDGTFYLWETNTWTS-EPWSSTS-  294 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~-  294 (444)
                      ++ .|++|+.|| +|++||++++...  .+..|...|.++  +|+|++ ++|++++.|++|+|||+++++. ..+.+|. 
T Consensus       277 ~~-~lasgs~Dg-tV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~  354 (524)
T 2j04_B          277 PT-TVVCGFKNG-FVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR  354 (524)
T ss_dssp             SS-EEEEEETTS-EEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred             CC-eEEEEeCCC-EEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence            64 799999998 9999999876432  366789999999  578887 8899999999999999998765 3344444 


Q ss_pred             -CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCC
Q 013347          295 -GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD  372 (444)
Q Consensus       295 -~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~  372 (444)
                       ..+.+++|+|+++.+++++ .+..++.|++.             ....+.++.+|. .|++++|+|+|++|++|+.|  
T Consensus       355 ~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~-------------~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D--  418 (524)
T 2j04_B          355 GSNLVPVVYCPQIYSYIYSD-GASSLRAVPSR-------------AAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD--  418 (524)
T ss_dssp             CCSCCCEEEETTTTEEEEEC-SSSEEEEEETT-------------CTTCCEEEEECSSCEEEEECCSSCCBCEEEETT--
T ss_pred             cCcccceEeCCCcCeEEEeC-CCCcEEEEECc-------------ccccceeeecCCCceEEEEeCCCCCeEEEEECC--
Confidence             3578999999999887654 44556666542             234456677888 99999999999999999998  


Q ss_pred             ccccceEEEEEcCCCCe--------------E-E------------------------EEEeeeeeCCCCCCcceeeeeC
Q 013347          373 DIYKGLIAIYDARRTPL--------------I-S------------------------LSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       373 ~~~d~~i~vwd~~~~~~--------------~-~------------------------~~~~~~~~~~~~~i~~v~~spd  413 (444)
                          ++|++||+..+.+              + .                        ......+.+|...|.+|+|+|+
T Consensus       419 ----gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~  494 (524)
T 2j04_B          419 ----GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNET  494 (524)
T ss_dssp             ----TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCS
T ss_pred             ----CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCC
Confidence                9999998542100              0 0                        1123346688999999999999


Q ss_pred             CCCCCCceEEEEeccceeeeeeeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      ++  .+.+++.|..+|.|++|.|.-
T Consensus       495 ~~--~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          495 SA--GGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             TT--TTTEEEEECTTSEEEEEECSC
T ss_pred             CC--ccHHHHhhccCceEEEEEccc
Confidence            76  356799999999999999853

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.7e-34  Score=264.64  Aligned_cols=254  Identities=15%  Similarity=0.250  Sum_probs=196.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+|++||+++.|++++||++............+|...|.+++|+|+++.|++++.|++|++||+.....   
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---  139 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---  139 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---
Confidence            49999999999999999999999999998632222333368999999999999999999999999999999974322   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce---eeecCCCCeE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLS  257 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~~~~~~v~  257 (444)
                                         ..+...+.+|. ..|.+++|+|++++|++++.|+ +|++||+++++..   .+..|...|.
T Consensus       140 -------------------~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~-~i~~w~~~~~~~~~~~~~~~h~~~v~  198 (345)
T 3fm0_A          140 -------------------YECVSVLNSHT-QDVKHVVWHPSQELLASASYDD-TVKLYREEEDDWVCCATLEGHESTVW  198 (345)
T ss_dssp             -------------------EEEEEEECCCC-SCEEEEEECSSSSCEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred             -------------------eEEEEEecCcC-CCeEEEEECCCCCEEEEEeCCC-cEEEEEecCCCEEEEEEecCCCCceE
Confidence                               23455677775 7999999999999999999998 9999999877532   3567889999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce----------------eccc-cCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS----------------EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----------------~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      +++|+|++++|++++.|++|++||......                ..+. .|...|.+++|+|++..+++++. ++.+.
T Consensus       199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~  277 (345)
T 3fm0_A          199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-DDAIR  277 (345)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-TSCEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-CCeEE
Confidence            999999999999999999999999743221                1122 37889999999999999987754 46677


Q ss_pred             EEEeecCCCCcCCCcCCCCc-ccccccccCC-ceeEEEECCCC-CEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          321 SIHFASKPPSLDAHLLPVDL-PDIVSLTGSQ-GIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~~~spdg-~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .|+........     .... .......+|. .|.+++|+|++ .+||+++.|      |+|++|++.+++..
T Consensus       278 vw~~~~~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D------g~v~~W~~~~~~~~  339 (345)
T 3fm0_A          278 VFQEDPNSDPQ-----QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD------GEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEEECTTSCTT-----SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT------SCEEEEEECC----
T ss_pred             EEEeCCCCCcc-----eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC------CcEEEEEecCCCCc
Confidence            77654321000     0000 0112335677 89999999998 599999998      99999999986644

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-34  Score=260.44  Aligned_cols=241  Identities=14%  Similarity=0.174  Sum_probs=201.4

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|++++|+|++..+++++.||+|++||+.+.                         .....+..|. ..|.+++|
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-------------------------~~~~~~~~~~-~~v~~~~~   63 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-------------------------VEVRSIQVTE-TPVRAGKF   63 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-------------------------EEEEEEECCS-SCEEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------------------ceeEEeeccC-CcEEEEEE
Confidence            589999999999999999999999999999999832                         2445667775 78999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccccCCCc
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGF  296 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~  296 (444)
                      +|++++|++++.|+ +|++||+.+++... +..|...|.+++|+|++++|++|+.|++|++||++++..  ..+.+|...
T Consensus        64 ~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~  142 (304)
T 2ynn_A           64 IARKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (304)
T ss_dssp             EGGGTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred             eCCCCEEEEECCCC-EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence            99999999999998 99999999987765 667899999999999999999999999999999988744  456789999


Q ss_pred             eeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECC--CCCEEEEEecCC
Q 013347          297 VTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDA--SGERLAVSYKGG  371 (444)
Q Consensus       297 v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp--dg~~l~~~~~d~  371 (444)
                      |.+++|+| ++..++++ +.++.+..|++..             ......+ .++. .+..+.|+|  ++++|++++.| 
T Consensus       143 v~~v~~~p~~~~~l~sg-s~D~~v~iwd~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D-  207 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASG-CLDRTVKVWSLGQ-------------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-  207 (304)
T ss_dssp             EEEEEECTTCTTEEEEE-ETTSEEEEEETTC-------------SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT-
T ss_pred             EEEEEECCCCCCEEEEE-eCCCeEEEEECCC-------------CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC-
Confidence            99999999 56777765 4556777777532             1112222 3443 788899886  78899999998 


Q ss_pred             CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                           ++|++||+++++.+     ..+.+|...|.+++|+|++++     |+.|..||.|++|++.
T Consensus       208 -----~~i~iWd~~~~~~~-----~~~~~h~~~v~~~~~~p~~~~-----l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          208 -----LTIKIWDYQTKSCV-----ATLEGHMSNVSFAVFHPTLPI-----IISGSEDGTLKIWNSS  258 (304)
T ss_dssp             -----SEEEEEETTTTEEE-----EEEECCSSCEEEEEECSSSSE-----EEEEETTSCEEEEETT
T ss_pred             -----CeEEEEeCCCCccc-----eeeCCCCCCEEEEEECCCCCE-----EEEEcCCCeEEEEECC
Confidence                 99999999987654     678899999999999999875     7888899999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.3e-35  Score=267.34  Aligned_cols=244  Identities=15%  Similarity=0.205  Sum_probs=191.9

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      |++++|+|+|++||+|+.|++|+|||+.+..........+|.+.|++++|++  ++..|++++.|++|++||++..    
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~----   91 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG----   91 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS----
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC----
Confidence            9999999999999999999999999998632222223358999999999986  3688999999999999998732    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCce----eeecCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGT----PIRRGF  253 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~  253 (444)
                                         .+.....+.+|. ..|.+++|+|+  +.+|++++.|+ +|++||++.+...    ....|.
T Consensus        92 -------------------~~~~~~~~~~h~-~~V~~v~~~p~~~g~~lasgs~D~-~i~lwd~~~~~~~~~~~~~~~h~  150 (316)
T 3bg1_A           92 -------------------TWEKSHEHAGHD-SSVNSVCWAPHDYGLILACGSSDG-AISLLTYTGEGQWEVKKINNAHT  150 (316)
T ss_dssp             -------------------CCCEEEEECCCS-SCCCEEEECCTTTCSCEEEECSSS-CEEEEEECSSSCEEECCBTTSSS
T ss_pred             -------------------cceEEEEccCCC-CceEEEEECCCCCCcEEEEEcCCC-CEEEEecCCCCCcceeeeecccc
Confidence                               122344567775 79999999997  88999999998 9999999876422    234577


Q ss_pred             CCeEEEEEecC-----------------CCeEEEEecCCcEEEEECCCCc---e-eccccCCCceeEEEECCCC----CE
Q 013347          254 GGLSILKWSPT-----------------GDYFFAAKFDGTFYLWETNTWT---S-EPWSSTSGFVTGATWDPEG----RM  308 (444)
Q Consensus       254 ~~v~~~~~sp~-----------------~~~l~~~~~d~~v~iwd~~~~~---~-~~~~~~~~~v~~~~~sp~g----~~  308 (444)
                      ..+.+++|+|+                 +++|++|+.|+.|++||++...   . ..+.+|...|++++|+|++    ++
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            88999999997                 4789999999999999997652   2 4577899999999999987    66


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      |+++ +.++.+..|++.....         .......+..|. .|.+++|+|+|++||+++.|      ++|++|+...
T Consensus       231 las~-s~D~~v~iw~~~~~~~---------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D------~~v~lw~~~~  293 (316)
T 3bg1_A          231 IASC-SQDGRVFIWTCDDASS---------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGD------NKVTLWKESV  293 (316)
T ss_dssp             EEEE-ETTCEEEEEECSSTTC---------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESS------SCEEEEEECT
T ss_pred             EEEE-cCCCeEEEEEccCccc---------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC------CeEEEEEECC
Confidence            7755 4557777776532100         001122344556 89999999999999999998      9999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-34  Score=265.28  Aligned_cols=252  Identities=14%  Similarity=0.265  Sum_probs=189.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|++.+|++++.|++|+|||+.+ ++....+ .+|...|.+++|+|+++.+++++.|++|++||+... ....
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~-~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~  154 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRT-GTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFS  154 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTS-SCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceee
Confidence            499999999999999999999999999987 4544444 589999999999999999999999999999998621 1100


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC----------CeEEEEeeCCCeEEEEEcCCCCceeee
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG----------RYLASASYESSSFTIWDVAQGLGTPIR  250 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------~~l~~~~~d~~~i~iwd~~~~~~~~~~  250 (444)
                      .                      ....+|. ..|.+++|+|++          .+|++++.|+ .|++||........+.
T Consensus       155 ~----------------------~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~  210 (343)
T 2xzm_R          155 S----------------------AEKENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-RLKVWNTNFQIRYTFK  210 (343)
T ss_dssp             C----------------------CTTTSCS-SCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-EEEEEETTTEEEEEEE
T ss_pred             e----------------------ecccCCC-ceeeeeeeccccccccccCCCCCEEEEEcCCC-EEEEEcCCCceeEEEc
Confidence            0                      0112443 789999999987          7899999998 9999995543334466


Q ss_pred             cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc-eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      .|...|.+++|+|++++|++++.|+.|++||+.... ......+...|.+++|+|++++++++.+  ..+..|++.....
T Consensus       211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d--~~v~iw~~~~~~~  288 (343)
T 2xzm_R          211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTD--QGVKIFNLMTQSK  288 (343)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEES--SCEEEEESSSCCS
T ss_pred             CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECC--CCEEEEEeCCCCC
Confidence            788999999999999999999999999999995433 3333345667999999999998876543  4466666533211


Q ss_pred             CcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      .....+............+|. .|.+++|+|+|++|++|+.|      |+|++|+++++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D------g~v~~w~~~~g  341 (343)
T 2xzm_R          289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD------GVIRTFSFETS  341 (343)
T ss_dssp             CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT------SEEEEEEEEEE
T ss_pred             CceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC------ceEEEEEEEcc
Confidence            000000000011112233566 89999999999999999998      99999998753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.1e-34  Score=268.51  Aligned_cols=280  Identities=14%  Similarity=0.162  Sum_probs=226.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+.+++|++  ..+++++.|+.|++|++.+ +.........|...|++++|+|++..+++++.||.|++||+...+    
T Consensus        95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----  167 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALERNVYVWNADS-GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----  167 (401)
T ss_dssp             TCBCEEECT--TSEEEEEETTEEEEEETTT-CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----
T ss_pred             eEEEEeecC--CCEEEEECCCeEEEeeCCC-CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----
Confidence            356677775  5577888999999999998 555555555689999999999998889999999999999998332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc--eeeecCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIRRGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~--~~~~~~~~~v~~  258 (444)
                                           ....+.+|. ..|.+++|  +++.|++++.|+ .|++||++....  ..+..|.+.|.+
T Consensus       168 ---------------------~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~  222 (401)
T 4aez_A          168 ---------------------KLRTMAGHQ-ARVGCLSW--NRHVLSSGSRSG-AIHHHDVRIANHQIGTLQGHSSEVCG  222 (401)
T ss_dssp             ---------------------EEEEECCCS-SCEEEEEE--ETTEEEEEETTS-EEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             ---------------------EEEEecCCC-CceEEEEE--CCCEEEEEcCCC-CEEEEecccCcceeeEEcCCCCCeeE
Confidence                                 344566775 89999999  567999999998 999999985432  346678899999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCCcCCCc
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ++|+|++++|++++.|+.|++||+++++. ..+..|...|.+++|+|++..++++++  .++.+..|++.          
T Consensus       223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----------  292 (401)
T 4aez_A          223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----------  292 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----------
T ss_pred             EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----------
Confidence            99999999999999999999999998877 456689999999999998876665544  56667766653          


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEe--cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY--KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                         ....+..+..+..|.+++|+|++++|++++  .+      |.|++||+.+++..   ....+.+|...|.+++|+||
T Consensus       293 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d------g~i~v~~~~~~~~~---~~~~~~~h~~~v~~~~~s~d  360 (401)
T 4aez_A          293 ---TGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD------NNLSIWSYSSSGLT---KQVDIPAHDTRVLYSALSPD  360 (401)
T ss_dssp             ---TCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT------CEEEEEEEETTEEE---EEEEEECCSSCCCEEEECTT
T ss_pred             ---CCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC------CcEEEEecCCccce---eEEEecCCCCCEEEEEECCC
Confidence               234455555555899999999999999965  55      99999999986544   23356789999999999999


Q ss_pred             CCCCCCceEEEEeccceeeeeeeeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      |++     |+.+..+|.|.+|++.-.
T Consensus       361 g~~-----l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          361 GRI-----LSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             SSE-----EEEECTTSEEEEEECCC-
T ss_pred             CCE-----EEEEeCCCcEEEEECCCC
Confidence            886     788889999999998643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-34  Score=264.24  Aligned_cols=282  Identities=15%  Similarity=0.152  Sum_probs=223.9

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .+|.+++|+|||++++++..++.+.+|....  ........+|...|++++|+|+++.+++++ ||.|++|++...+...
T Consensus        10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A           10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR--HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EECCEEEECSSSCEEECCCCTTSSSSTTCCS--EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             CceeEEEECCCCCEEEeecCCCcEeccccCC--ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            4689999999999999888777766665543  222223348999999999999977776666 9999999998544332


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce---eeecCCCCe
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGL  256 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~~~~~~v  256 (444)
                      .+..                    .....| ...|.+++|+|++++|++++.|+ .|++||+.+++..   .+..|...+
T Consensus        87 ~~~~--------------------~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           87 PVSQ--------------------LDCLNR-DNYIRSCKLLPDGCTLIVGGEAS-TLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             CSEE--------------------EECSCT-TSBEEEEEECTTSSEEEEEESSS-EEEEEECCCC--EEEEEEECSSSCE
T ss_pred             eeec--------------------ccccCC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEECCCCCcceeeecccCCCce
Confidence            2211                    011245 37999999999999999999998 9999999988632   355678899


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .+++|+|++++|++++.|+.|++||+++++. ..+..|...+.+++|+|+++++++++ .++.+..|++.          
T Consensus       145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~----------  213 (337)
T 1gxr_A          145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLR----------  213 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT----------
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECC----------
Confidence            9999999999999999999999999999877 45667899999999999999998765 44667777653          


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                         ....+..+.....+.+++|+|++++|++++.+      +.|++||+.+++..      .+..|...|.+++|+|+++
T Consensus       214 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~i~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          214 ---EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES------SNVEVLHVNKPDKY------QLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             ---TTEEEEEEECSSCEEEEEECTTSSEEEEEETT------SCEEEEETTSSCEE------EECCCSSCEEEEEECTTSS
T ss_pred             ---CCceEeeecCCCceEEEEECCCCCEEEEEcCC------CcEEEEECCCCCeE------EEcCCccceeEEEECCCCC
Confidence               22333444434489999999999999999988      99999999987653      4668899999999999988


Q ss_pred             CCCCceEEEEeccceeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +     ++++..+|.|.+|++.
T Consensus       279 ~-----l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          279 W-----FVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             E-----EEEEETTSEEEEEETT
T ss_pred             E-----EEEecCCCcEEEEECC
Confidence            6     7788889999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=274.72  Aligned_cols=307  Identities=12%  Similarity=0.084  Sum_probs=217.7

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccC---CCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC--
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYED---SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY--  174 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~---~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~--  174 (444)
                      .|++++|+| ++++||+|+.||.|+|||+..   ...........|...|++++|+|++..+++++.||.|++||++.  
T Consensus        65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  144 (437)
T 3gre_A           65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ  144 (437)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE
T ss_pred             ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecccc
Confidence            499999999 999999999999999999976   22121222236999999999999988999999999999999951  


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeecc---CCCceEEEE--EccCCCeEEEEeeCCCeEEEEEcCCCCcee-
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALS--WGPDGRYLASASYESSSFTIWDVAQGLGTP-  248 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-  248 (444)
                      .+.......+                ..+..+..+   ....+.++.  +++++++|++++.|+ .|++||+++++... 
T Consensus       145 ~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          145 QESEVKFLNC----------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS-RVIIFDIRTLERLQI  207 (437)
T ss_dssp             ETTEEEEEEE----------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS-EEEEEETTTCCEEEE
T ss_pred             CCceeecccc----------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCeeeEE
Confidence            1111111111                122222211   236788888  678999999999998 99999999988765 


Q ss_pred             eec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECC----CCCEEEEEEcCCceEE
Q 013347          249 IRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDP----EGRMILLAFAGSLTLG  320 (444)
Q Consensus       249 ~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp----~g~~l~~~~~~~~~~~  320 (444)
                      +..  |...|.+++|+|++++|++|+.||.|++||+++++... +. .|...|.+++|+|    ++.+++++ +.++.+.
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~i~  286 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTFLT  286 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCcEE
Confidence            344  67999999999999999999999999999999988743 33 7778999996654    56677755 5556677


Q ss_pred             EEEeecCCC--CcCCC---cC----CCCccc--cccccc--CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          321 SIHFASKPP--SLDAH---LL----PVDLPD--IVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       321 ~~~~~~~~~--~~~~~---~~----~~~~~~--~~~~~~--~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .|++.....  .+..+   ..    ......  ...+.+  |. .|++++|+ ++++|++++.|      +.|++||+.+
T Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d------~~i~~wd~~~  359 (437)
T 3gre_A          287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEAT------SSIVMFSLNE  359 (437)
T ss_dssp             EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGG------TEEEEEETTC
T ss_pred             EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCC------CeEEEEECCC
Confidence            766532210  00000   00    000000  002233  55 79999999 88999999988      9999999998


Q ss_pred             CCeEEEEEe--------------------------------eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          387 TPLISLSLI--------------------------------GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       387 ~~~~~~~~~--------------------------------~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ++.......                                .....|.+.|++++|+++.   ...+|+.+-++|.|.+|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~---~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVD---ETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESS---SSEEEEEEETTSCEEEE
T ss_pred             cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccC---CceEEEEEcCCceEEEe
Confidence            765421110                                0122389999999999982   23468889999999998


Q ss_pred             e
Q 013347          435 P  435 (444)
Q Consensus       435 ~  435 (444)
                      .
T Consensus       437 ~  437 (437)
T 3gre_A          437 Q  437 (437)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-35  Score=277.07  Aligned_cols=294  Identities=15%  Similarity=0.213  Sum_probs=212.9

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ...|++++|+|++++||+++.|+.|+||++.+.. +....+ .+|...|.+++|+|+++.+++++.|+.|++||+.....
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            3469999999999999999999999999999731 333333 58999999999999998999999999999999984431


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC----ceeeec-C
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTPIRR-G  252 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~-~  252 (444)
                                            +.....+.+|. ..|.+++|+|++++|++++.|+ .|++||+++++    ...+.. |
T Consensus        90 ----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           90 ----------------------WKQTLVLLRLN-RAATFVRWSPNEDKFAVGSGAR-VISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             ----------------------CCCEEECCCCS-SCEEEEECCTTSSCCEEEESSS-CEEECCC-----CCCCEEECSSC
T ss_pred             ----------------------eeeeeEecccC-CceEEEEECCCCCEEEEEecCC-eEEEEEECCcccceeeeEeeccc
Confidence                                  11233455664 8999999999999999999998 99999999886    334555 8


Q ss_pred             CCCeEEEEEecCCCeEEEEecCCcEEEEECCCC------------------ce-eccccCCCceeEEEECCCCCEEEEEE
Q 013347          253 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW------------------TS-EPWSSTSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~------------------~~-~~~~~~~~~v~~~~~sp~g~~l~~~~  313 (444)
                      ...|.+++|+|++++|++++.|+.|++||++..                  +. ..+ .|...|++++|+|++++|++++
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence            899999999999999999999999999998632                  22 233 8899999999999999998765


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe-E-
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-I-  390 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~-~-  390 (444)
                       .++.+..|++.....         ....+..+.+|. .|.+++|+|+|++|++++.+      +.+ +|+...... . 
T Consensus       225 -~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~~~-~~~~~~~~~~~~  287 (377)
T 3dwl_C          225 -HDSSVTIAYPSAPEQ---------PPRALITVKLSQLPLRSLLWANESAIVAAGYNY------SPI-LLQGNESGWAHT  287 (377)
T ss_dssp             -TTTEEC-CEECSTTS---------CEEECCCEECSSSCEEEEEEEETTEEEEEESSS------SEE-EECCCC---CCS
T ss_pred             -CCCcEEEEECCCCCC---------cceeeEeecCCCCceEEEEEcCCCCEEEEEcCC------cEE-EEEeCCCceEEE
Confidence             446777777643210         011266777888 89999999999999998765      555 676542110 0 


Q ss_pred             --------------------------EE-------------------EEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE
Q 013347          391 --------------------------SL-------------------SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  425 (444)
Q Consensus       391 --------------------------~~-------------------~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~  425 (444)
                                                ..                   ........|...|+++++.++... ....++.|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~-~~~~~~s~  366 (377)
T 3dwl_C          288 RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG-NITAFTSS  366 (377)
T ss_dssp             BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT-EEEEEEEE
T ss_pred             eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC-ceEEEEee
Confidence                                      00                   000011238888999987665432 12245666


Q ss_pred             eccceeeeeee
Q 013347          426 WSSGFCCTYPL  436 (444)
Q Consensus       426 ~~~g~i~~~~~  436 (444)
                      -.||.|++|++
T Consensus       367 g~Dg~i~iWdl  377 (377)
T 3dwl_C          367 GTDGRVVLWTL  377 (377)
T ss_dssp             ETTSEEEEECC
T ss_pred             cCCCcEEEecC
Confidence            68999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.6e-34  Score=264.82  Aligned_cols=239  Identities=14%  Similarity=0.160  Sum_probs=185.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|++++|+|+++++ +++.||+|+|||+.+....  ......+|...|++++|+|+++.+++++.|+.|++||+...   
T Consensus        96 ~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---  171 (357)
T 4g56_B           96 GVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---  171 (357)
T ss_dssp             CEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---
T ss_pred             CEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---
Confidence            59999999998755 5788999999999874211  12223589999999999999999999999999999999832   


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCCCceee---ecCCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTPI---RRGFG  254 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~~~~~~---~~~~~  254 (444)
                                            .+...+.+|. ..|.+++|+|++. ++++++.|+ +|++||+++++....   ..+..
T Consensus       172 ----------------------~~~~~~~~h~-~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~~~~~~~~~~~~~~  227 (357)
T 4g56_B          172 ----------------------AVLKSYNAHS-SEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKPKPATRIDFCASDT  227 (357)
T ss_dssp             ----------------------EEEEEECCCS-SCEEEEEECTTCSSCEEEEETTS-CEEECCTTSSSCBCBCCCTTCCS
T ss_pred             ----------------------cEEEEEcCCC-CCEEEEEEccCCCceeeeeccCC-ceEEEECCCCceeeeeeeccccc
Confidence                                  3555677785 8999999999875 788899998 999999998876543   23567


Q ss_pred             CeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          255 GLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       255 ~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      .+.+++|+|+ +++|++|+.|+.|++||+++++. ..+..|...|++++|+|++..++++++.++.+++|++.       
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~-------  300 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD-------  300 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT-------
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC-------
Confidence            8999999997 46788999999999999999877 56778999999999999985433344555666666542       


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                            ..+.+. ..+|. .|++++|+| |+++|++++.|      ++|++|++.+.
T Consensus       301 ------~~~~~~-~~~H~~~V~~vafsP~d~~~l~s~s~D------g~v~iW~~~~~  344 (357)
T 4g56_B          301 ------FSEVFR-DLSHRDFVTGVAWSPLDHSKFTTVGWD------HKVLHHHLPSE  344 (357)
T ss_dssp             ------SCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETT------SCEEEEECC--
T ss_pred             ------CCcEeE-ECCCCCCEEEEEEeCCCCCEEEEEcCC------CeEEEEECCCC
Confidence                  223333 34677 999999999 89999999998      99999999753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.7e-33  Score=265.21  Aligned_cols=282  Identities=13%  Similarity=0.198  Sum_probs=226.9

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .+.++.++||++ ++||+| .|++|+|||..+ ++....+ ..+|...|++|+|+|+|..|++++.||.|+|||+...  
T Consensus       105 d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~t-g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--  179 (420)
T 4gga_A          105 DYYLNLVDWSSG-NVLAVA-LDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--  179 (420)
T ss_dssp             CTTCBCEEECTT-SEEEEE-ETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--
T ss_pred             cccceeEEECCC-CEEEEE-eCCEEEEEECCC-CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--
Confidence            345788999986 577776 499999999998 5544443 3578889999999999999999999999999999832  


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGG  255 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~  255 (444)
                                             .++..+.+|. ..+.++++  ++..|++++.|+ .+++||.......  .+..|...
T Consensus       180 -----------------------~~~~~~~~h~-~~v~~~s~--~~~~l~sgs~d~-~i~~~d~~~~~~~~~~~~~h~~~  232 (420)
T 4gga_A          180 -----------------------KRLRNMTSHS-ARVGSLSW--NSYILSSGSRSG-HIHHHDVRVAEHHVATLSGHSQE  232 (420)
T ss_dssp             -----------------------EEEEEECCCS-SCEEEEEE--ETTEEEEEETTS-EEEEEETTSSSCEEEEEECCSSC
T ss_pred             -----------------------cEEEEEeCCC-CceEEEee--CCCEEEEEeCCC-ceeEeeecccceeeEEecccccc
Confidence                                   3556677785 78888776  568999999998 9999999876543  36678899


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCCCCEEE-EE-EcCCceEEEEEeecCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMIL-LA-FAGSLTLGSIHFASKP  328 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~-~~-~~~~~~~~~~~~~~~~  328 (444)
                      +..+.|+|+++++++++.|+.+++||..+++.     .....|...|.+++|+|.+..++ ++ ++.++.+..|++.   
T Consensus       233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~---  309 (420)
T 4gga_A          233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC---  309 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT---
T ss_pred             eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC---
Confidence            99999999999999999999999999988764     23457889999999999776554 33 3455666665542   


Q ss_pred             CCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcce
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  408 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v  408 (444)
                                +...+..+..+..+.++.|+|+++.|++++...    |+.|+|||+.+++.+     ..+.+|...|+++
T Consensus       310 ----------t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~----d~~I~iwd~~~~~~v-----~~l~gH~~~V~~l  370 (420)
T 4gga_A          310 ----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRVLSL  370 (420)
T ss_dssp             ----------TTEEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCEEEE
T ss_pred             ----------ccccceeeccccceeeeeecCCCCeEEEEEecC----CCEEEEEECCCCcEE-----EEEcCCCCCEEEE
Confidence                      345566666777899999999999998876321    289999999987765     6788999999999


Q ss_pred             eeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          409 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       409 ~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      +|||||++     |+.|-.||+|++|++.-.
T Consensus       371 ~~spdg~~-----l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          371 TMSPDGAT-----VASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EECTTSSC-----EEEEETTTEEEEECCSCS
T ss_pred             EEcCCCCE-----EEEEecCCeEEEEECCCC
Confidence            99999987     777889999999998643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-33  Score=289.24  Aligned_cols=277  Identities=12%  Similarity=0.134  Sum_probs=227.4

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      |++++|+|+|++||+++.||.|+|||+.+ +.....+ .+|...|.+++|+|+++.+++++.||.|++|++.+.+     
T Consensus        16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----   88 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSGRVEIWNYET-QVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----   88 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCC-CceEEEE-ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence            99999999999999999999999999987 5555555 4899999999999999999999999999999998332     


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ce-eeecCCCCeEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GT-PIRRGFGGLSIL  259 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~-~~~~~~~~v~~~  259 (444)
                                          ....+.+|. ..|.+++|+|++++|++++.|+ .|++||+.++. .. .+..|...|.++
T Consensus        89 --------------------~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           89 --------------------KVVDFEAHP-DYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             --------------------EEEEEECCS-SCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             --------------------EEEEEecCC-CCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCCceEEEEEcCCCCcEEEE
Confidence                                344566775 8999999999999999999998 99999998873 33 355688999999


Q ss_pred             EEec-CCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECC--CCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          260 KWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       260 ~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +|+| +++.|++++.||.|++||+.+++. ..+. .+...+.+++|+|  ++.++++++ .++.+..|++.         
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~---------  216 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQ---------  216 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETT---------
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECC---------
Confidence            9999 889999999999999999988766 3333 4448899999999  899888764 44666666642         


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                          ....+..+.+|. .|.+++|+|++++|++++.|      |.|++||+.+++..     ..+..|...+.+++|+|+
T Consensus       217 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~  281 (814)
T 3mkq_A          217 ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSED------GTLKIWNSSTYKVE-----KTLNVGLERSWCIATHPT  281 (814)
T ss_dssp             ----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCSEE-----EEECCSSSSEEEEEECTT
T ss_pred             ----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcEE-----EEeecCCCcEEEEEEccC
Confidence                344566777787 89999999999999999998      99999999987765     567778889999999999


Q ss_pred             CCCCCCceEEEEeccceeeeeee
Q 013347          414 DKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      |+..   +++++.++ .+.+|.+
T Consensus       282 ~~~~---~~~~~~~~-~~~~~~~  300 (814)
T 3mkq_A          282 GRKN---YIASGFDN-GFTVLSL  300 (814)
T ss_dssp             CGGG---EEEEEETT-EEEEEEC
T ss_pred             CCce---EEEEEeCC-CEEEEEc
Confidence            8631   35555544 4554543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-33  Score=253.89  Aligned_cols=253  Identities=15%  Similarity=0.176  Sum_probs=199.7

Q ss_pred             ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       139 ~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..+|.+.|++++|+|+|+.|++++.|++|+||++.....                       .+...+.+|. ..|.+++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----------------------~~~~~l~gH~-~~V~~v~   60 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----------------------KLIDTLTGHE-GPVWRVD   60 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----------------------CCCEEECCCS-SCEEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----------------------EEEEEEcccc-CCeEEEE
Confidence            358999999999999999999999999999999873211                       1334677886 8999999


Q ss_pred             Ecc--CCCeEEEEeeCCCeEEEEEcCCCCc---eeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---e
Q 013347          219 WGP--DGRYLASASYESSSFTIWDVAQGLG---TPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---E  288 (444)
Q Consensus       219 ~sp--~~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---~  288 (444)
                      |++  ++++|++++.|+ +|++||+++++.   ..+..|...|.+++|+|+  +++|++++.|+.|++||++++..   .
T Consensus        61 ~s~~~~g~~l~s~s~D~-~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           61 WAHPKFGTILASCSYDG-KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             ECCGGGCSEEEEEETTT-EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             ecCCCcCCEEEEEcCCC-EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence            986  489999999998 999999988742   234567889999999997  88999999999999999987642   3


Q ss_pred             ccccCCCceeEEEECCC-------------CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE
Q 013347          289 PWSSTSGFVTGATWDPE-------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK  354 (444)
Q Consensus       289 ~~~~~~~~v~~~~~sp~-------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~  354 (444)
                      .+.+|...|.+++|+|+             +++|+++ +.++.++.|++.....         ......++.+|. .|.+
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lwd~~~~~~---------~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEE-ETTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEE
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEE-cCCCcEEEEEEcCCCc---------eEEEEEEecCCCCceEE
Confidence            45689999999999997             4577755 4557788887653210         112445778888 9999


Q ss_pred             EEECCCC---CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347          355 IAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  431 (444)
Q Consensus       355 ~~~spdg---~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i  431 (444)
                      ++|+|++   ++|++++.|      ++|+|||++..............+|...|.+++|+|+|++     |+.+..||.|
T Consensus       210 v~~sp~~~~~~~las~s~D------~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----las~~~D~~v  278 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKV  278 (297)
T ss_dssp             EEECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEETTSCE
T ss_pred             EEECCCCCCceEEEEEECC------CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-----EEEEcCCCcE
Confidence            9999995   899999998      9999999987432101011112467888999999999886     7888899999


Q ss_pred             eeeeee
Q 013347          432 CTYPLI  437 (444)
Q Consensus       432 ~~~~~~  437 (444)
                      .+|+..
T Consensus       279 ~lw~~~  284 (297)
T 2pm7_B          279 TLWKEN  284 (297)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.6e-34  Score=270.46  Aligned_cols=277  Identities=15%  Similarity=0.157  Sum_probs=214.7

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      +++++|+|+|++|++++.|+.+++|++.+. .....+ ..| ..+....|+++++.+++++.|+.|++||+...      
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------  129 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIR-DGSKML-KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN------  129 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSE-ETTTTS-CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC------
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEeccc-ceeeEE-ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc------
Confidence            567899999999999999999999999863 222222 234 44555578999888999999999999998722      


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~  260 (444)
                                         .....+.+|. ..|.+++|+|++++|++++.|+ .|++||+.+++... +..|...|.+++
T Consensus       130 -------------------~~~~~~~~h~-~~v~~~~~~~~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          130 -------------------LQREIDQAHV-SEITKLKFFPSGEALISSSQDM-QLKIWSVKDGSNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             -------------------EEEEETTSSS-SCEEEEEECTTSSEEEEEETTS-EEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred             -------------------ceeeeccccc-CccEEEEECCCCCEEEEEeCCC-eEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence                               2344456675 8999999999999999999998 99999999887665 567899999999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCcee-ccc---cC---------------------CCceeEEEECCCCCEEEEEEcC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---ST---------------------SGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~---~~---------------------~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      |+|++++|++++.|+.|++||+++++.. .+.   .+                     ...+.+++|+|+++++++++. 
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-  267 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence            9999999999999999999999988763 232   22                     345556667899999887654 


Q ss_pred             CceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347          316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISL  392 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~  392 (444)
                      ++.+..|++..             ...+..+ .+|. .|.+++|+|+++ +|++++.|      |.|++||+++++..  
T Consensus       268 dg~i~i~d~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~--  326 (420)
T 3vl1_A          268 SGVITVHNVFS-------------KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN------GMLAQWDLRSPECP--  326 (420)
T ss_dssp             TSCEEEEETTT-------------CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSC--
T ss_pred             CCeEEEEECCC-------------CceeEEcccccCCCceeEEEeCCCCCEEEEEeCC------CeEEEEEcCCCcCc--
Confidence            46677776532             2222233 3455 899999999998 99999998      99999999986542  


Q ss_pred             EEeeeeeC-CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          393 SLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       393 ~~~~~~~~-~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                        +..+.+ |...|.++ ++++++     +++.+..+|.|.+|++.-
T Consensus       327 --~~~~~~~~~~~v~~~-~~~~~~-----~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          327 --VGEFLINEGTPINNV-YFAAGA-----LFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             --SEEEEESTTSCEEEE-EEETTE-----EEEEETTTEEEEEEEECC
T ss_pred             --hhhhhccCCCCceEE-EeCCCC-----EEEEecCCccEEEEeccC
Confidence              234555 56667777 455665     478888999999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.4e-33  Score=267.19  Aligned_cols=285  Identities=16%  Similarity=0.168  Sum_probs=218.6

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      +....|+|++++||+++.||.|++|++.+ +... ....+|...|++++|+|++..+++++.|+.|++||+...+.    
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----  173 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQR-EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----  173 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTS-CEEE-EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCC-ccee-eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----
Confidence            44557899999999999999999999986 3333 33358999999999999988899999999999999984432    


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec----CCCCeE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----GFGGLS  257 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----~~~~v~  257 (444)
                                           ...+.+|. ..|.+++|+|++++|++++.|+ .|++||+++++......    +...+.
T Consensus       174 ---------------------~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~v~  230 (420)
T 3vl1_A          174 ---------------------PRTLIGHR-ATVTDIAIIDRGRNVLSASLDG-TIRLWECGTGTTIHTFNRKENPHDGVN  230 (420)
T ss_dssp             ---------------------CEEEECCS-SCEEEEEEETTTTEEEEEETTS-CEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred             ---------------------ceEEcCCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEeECCCCceeEEeecCCCCCCCcc
Confidence                                 23456675 8999999999999999999998 99999999887665432    234444


Q ss_pred             E---------------------EEEecCCCeEEEEecCCcEEEEECCCCcee-c-cccCCCceeEEEECCCCC-EEEEEE
Q 013347          258 I---------------------LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGR-MILLAF  313 (444)
Q Consensus       258 ~---------------------~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~g~-~l~~~~  313 (444)
                      +                     ++|+|++++|++++.||.|++||+++++.. . ...|...+.+++|+|+++ +++++ 
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g-  309 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG-  309 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE-
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE-
Confidence            4                     455789999999999999999999988763 2 346788999999999999 77755 


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS  391 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~  391 (444)
                      +.++.+..|++...            ...+..+.. |. .|..+.| +++++|++++.|      +.|++|++.......
T Consensus       310 ~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d------~~v~iw~~~~~~~~~  370 (420)
T 3vl1_A          310 YENGMLAQWDLRSP------------ECPVGEFLINEGTPINNVYF-AAGALFVSSGFD------TSIKLDIISDPESER  370 (420)
T ss_dssp             ETTSEEEEEETTCT------------TSCSEEEEESTTSCEEEEEE-ETTEEEEEETTT------EEEEEEEECCTTCCS
T ss_pred             eCCCeEEEEEcCCC------------cCchhhhhccCCCCceEEEe-CCCCEEEEecCC------ccEEEEeccCCCCCc
Confidence            45577777775321            123455655 44 7777755 588899999988      999999987632210


Q ss_pred             ----EEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          392 ----LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       392 ----~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                          ......+.+|...|.+++|+|+++. .+.++++| ++|.+.+|.+.
T Consensus       371 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~g~l~a~g-~~g~~~~~~~~  418 (420)
T 3vl1_A          371 PAIEFETPTFLVSNDDAVSQFCYVSDDES-NGEVLEVG-KNNFCALYNLS  418 (420)
T ss_dssp             CEECTTSCEEECCSSCCCCEEEEECCSSS-SCEEEEEE-TTTEEEEEESC
T ss_pred             cceeccCccEEccCCcceEEEEEccCCCC-cceEEEEc-CCceEEEEecc
Confidence                0112245678899999999999873 23456666 77999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.4e-33  Score=256.87  Aligned_cols=272  Identities=11%  Similarity=0.061  Sum_probs=217.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEec-CCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP-SYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~-~~~~  176 (444)
                      .|++++|+|++++|++++.|+.|+||++.....  ..... ..|...|.+++|+|++. .+++++.||.|++|++ ....
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence            499999999999999999999999999987321  12222 48999999999999988 8889999999999999 6321


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeec--cCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC---------CC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRS--QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---------GL  245 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~---------~~  245 (444)
                                                ...+.+  |. ..|.+++|+| ++.|++++.|+ .|++||+++         ++
T Consensus        92 --------------------------~~~~~~~~~~-~~v~~l~~~~-~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~  142 (342)
T 1yfq_A           92 --------------------------FQALTNNEAN-LGICRICKYG-DDKLIAASWDG-LIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             --------------------------EEECBSCCCC-SCEEEEEEET-TTEEEEEETTS-EEEEECHHHHTTBCEEEEES
T ss_pred             --------------------------eEeccccCCC-CceEEEEeCC-CCEEEEEcCCC-eEEEEcccccccccccccCC
Confidence                                      123455  64 8999999999 99999999998 999999987         66


Q ss_pred             ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-Cce---eccccCCCceeEEEECC-CCCEEEEEEcCCceEE
Q 013347          246 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTS---EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLG  320 (444)
Q Consensus       246 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~---~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~  320 (444)
                      ......+...+.+++|+|++  +++++.|+.|++||+++ +..   .....+...+.+++|+| +++++++++. ++.+.
T Consensus       143 ~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~  219 (342)
T 1yfq_A          143 NSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRVA  219 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEEE
T ss_pred             eeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcEE
Confidence            55555588999999999887  89999999999999998 543   23447788999999999 9999887754 56777


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccC---------C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGS---------Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .|++......       ........+..|         . .|.+++|+|++++|++++.|      |.|++||+.+++.+
T Consensus       220 i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~  286 (342)
T 1yfq_A          220 VEFFDDQGDD-------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD------GIISCWNLQTRKKI  286 (342)
T ss_dssp             EEECCTTCCS-------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEE
T ss_pred             EEEEcCCCcc-------cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC------ceEEEEcCccHhHh
Confidence            7765432000       001233344443         3 79999999999999999988      99999999987664


Q ss_pred             EEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEeccce
Q 013347          391 SLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSGF  430 (444)
Q Consensus       391 ~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~~g~  430 (444)
                           ..+.+| ...|.+++  |+|++     |+.+..||.
T Consensus       287 -----~~~~~~h~~~v~~~~--~~~~~-----l~s~s~Dg~  315 (342)
T 1yfq_A          287 -----KNFAKFNEDSVVKIA--CSDNI-----LCLATSDDT  315 (342)
T ss_dssp             -----EECCCCSSSEEEEEE--ECSSE-----EEEEEECTH
T ss_pred             -----hhhhcccCCCceEec--CCCCe-----EEEEecCCc
Confidence                 567788 88999998  88876     777888888

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-33  Score=262.40  Aligned_cols=236  Identities=16%  Similarity=0.245  Sum_probs=193.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+|++||+|+.|+.|+|||+.+ ++....+ .+|...|.+++|+|++..+++++.|++|++||+....    
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~----  198 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ----  198 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe----
Confidence            389999999999999999999999999986 4444444 6899999999999999999999999999999998332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceee--------ec
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPI--------RR  251 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~--------~~  251 (444)
                                           +...+..+  ..+.+++|+| ++++|++++.|+ .|++||+++++....        ..
T Consensus       199 ---------------------~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~-~v~iwd~~~~~~~~~~~~~~~~~~~  254 (393)
T 1erj_A          199 ---------------------CSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGTG  254 (393)
T ss_dssp             ---------------------EEEEEECS--SCEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------CC
T ss_pred             ---------------------eEEEEEcC--CCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCCcEEEeecccccCCCC
Confidence                                 22223322  6799999999 899999999998 999999998875543        35


Q ss_pred             CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-------------eccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      |...|.+++|+|++++|++++.|+.|++||+++...             ..+.+|...|.+++|+|++++|++++ .++.
T Consensus       255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~  333 (393)
T 1erj_A          255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRG  333 (393)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSE
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCe
Confidence            778999999999999999999999999999976431             34558999999999999999998764 4466


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECC------CCCEEEEEecCCCccccceEEEEEcCC
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA------SGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp------dg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      +..|++.             ....+..+.+|. .|.+++|++      ++++|++++.|      ++|+||+++.
T Consensus       334 v~iwd~~-------------~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D------g~i~iW~~~~  389 (393)
T 1erj_A          334 VLFWDKK-------------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYKK  389 (393)
T ss_dssp             EEEEETT-------------TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEEE
T ss_pred             EEEEECC-------------CCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC------CcEEECcccc
Confidence            6666642             345567788888 899999886      78999999998      9999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.3e-33  Score=257.41  Aligned_cols=265  Identities=12%  Similarity=0.163  Sum_probs=211.6

Q ss_pred             ccccccccccccccccccCCCCccCccc------------------------cceEEEEEecCCCeEEEEECCCeEEEEE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPE------------------------VDLQGVSWHQHKHIVAFISGSTQVIVRD  127 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~~sp~g~~la~~~~dg~v~iw~  127 (444)
                      .....|+||.+.+....+.|....++.+                        ..|.+++|+|+|.+||+++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            3446788998876555555443322221                        1378999999999999999999999999


Q ss_pred             ccCCCC----ceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEE
Q 013347          128 YEDSGK----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV  203 (444)
Q Consensus       128 ~~~~~~----~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (444)
                      +.....    .......+|...|.+++|+|++..+++++.|++|++||++..                         .+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------------------------~~~  189 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------------------------QLL  189 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------------------------CEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------------------------eEE
Confidence            875311    112222479999999999999889999999999999999833                         245


Q ss_pred             EEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347          204 DFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW  280 (444)
Q Consensus       204 ~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  280 (444)
                      ..+.+|. ..|.+++|+|  ++++|++++.|+ +|++||+++++... +..|...|.+++|+|++++|++++.|++|++|
T Consensus       190 ~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~Dg-~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lw  267 (354)
T 2pbi_B          190 QSFHGHG-ADVLCLDLAPSETGNTFVSGGCDK-KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY  267 (354)
T ss_dssp             EEEECCS-SCEEEEEECCCSSCCEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEEcCCC-CCeEEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            5677885 7899999987  578999999998 99999999988765 45688999999999999999999999999999


Q ss_pred             ECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEE
Q 013347          281 ETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA  356 (444)
Q Consensus       281 d~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~  356 (444)
                      |+++++.....   .+...+.+++|+|+++++++++ .++.+..|++.             +...+..+.+|. .|++++
T Consensus       268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~-------------~~~~~~~l~~h~~~v~~l~  333 (354)
T 2pbi_B          268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVL-------------KGSRVSILFGHENRVSTLR  333 (354)
T ss_dssp             ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETT-------------TCSEEEEECCCSSCEEEEE
T ss_pred             ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECC-------------CCceEEEEECCCCcEEEEE
Confidence            99987663322   2345789999999999999765 44667777653             334566778888 999999


Q ss_pred             ECCCCCEEEEEecCCCccccceEEEEE
Q 013347          357 WDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       357 ~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      |+|||++|++++.|      ++|+||+
T Consensus       334 ~spdg~~l~sgs~D------~~v~vW~  354 (354)
T 2pbi_B          334 VSPDGTAFCSGSWD------HTLRVWA  354 (354)
T ss_dssp             ECTTSSCEEEEETT------SEEEEEC
T ss_pred             ECCCCCEEEEEcCC------CCEEecC
Confidence            99999999999998      9999996

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.7e-32  Score=247.27  Aligned_cols=279  Identities=12%  Similarity=0.175  Sum_probs=217.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .+++|+||+++ +||+| .|++|+|||+.+ ++....+ ..+|...|++++|+|+++.+++++.|++|++|+++..    
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~t-g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----   99 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASS-GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----   99 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTT-CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCC-CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----
Confidence            35789999986 77765 599999999998 5544443 3578889999999999999999999999999999832    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~  257 (444)
                                           .++..+.+|. ..+.++  ++++..+++++.++ .+++|+.......  .+..|...+.
T Consensus       100 ---------------------~~~~~~~~h~-~~~~~~--~~~~~~l~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  154 (318)
T 4ggc_A          100 ---------------------KRLRNMTSHS-ARVGSL--SWNSYILSSGSRSG-HIHHHDVRVAEHHVATLSGHSQEVC  154 (318)
T ss_dssp             ---------------------EEEEEEECCS-SCEEEE--EEETTEEEEEETTS-EEEEEETTSSSCEEEEEECCSSCEE
T ss_pred             ---------------------eeEEEecCcc-ceEEEe--ecCCCEEEEEecCC-ceEeeecCCCceeEEEEcCccCceE
Confidence                                 3455677775 566654  45678999999998 9999998876543  3567889999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCCCCEEEE--EEcCCceEEEEEeecCCCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILL--AFAGSLTLGSIHFASKPPS  330 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~~--~~~~~~~~~~~~~~~~~~~  330 (444)
                      .+++++++++|++++.|+.|++||+++++.     .....+...+.+++++|++..++.  +++.++.+..|+..     
T Consensus       155 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~-----  229 (318)
T 4ggc_A          155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC-----  229 (318)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT-----
T ss_pred             EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc-----
Confidence            999999999999999999999999998764     223467888999999998765543  33344444444431     


Q ss_pred             cCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee
Q 013347          331 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~  410 (444)
                              ..........+..+..+.|+|+++.+++++...    |+.|++||+++++.+     ..+.+|.+.|++++|
T Consensus       230 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~----d~~i~iwd~~~~~~~-----~~l~gH~~~V~~l~~  292 (318)
T 4ggc_A          230 --------SGACLSAVDAHSQVCSILWSPHYKELISGHGFA----QNQLVIWKYPTMAKV-----AELKGHTSRVLSLTM  292 (318)
T ss_dssp             --------TCCEEEEEECSSCEEEEEEETTTTEEEEEECTT----TCCEEEEETTTCCEE-----EEECCCSSCEEEEEE
T ss_pred             --------cccccccccceeeeeeeeecccccceEEEEEcC----CCEEEEEECCCCcEE-----EEEcCCCCCEEEEEE
Confidence                    122222333334899999999999988876321    299999999988765     678899999999999


Q ss_pred             eeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          411 SFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       411 spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +|||++     |+.|..||.|++|++.-
T Consensus       293 spdg~~-----l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          293 SPDGAT-----VASAAADETLRLWRCFE  315 (318)
T ss_dssp             CTTSSC-----EEEEETTTEEEEECCSC
T ss_pred             cCCCCE-----EEEEecCCeEEEEECCC
Confidence            999987     77788999999999863

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=254.49  Aligned_cols=278  Identities=11%  Similarity=0.126  Sum_probs=216.0

Q ss_pred             eEEEEEecC---CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQH---KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~---g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      |++++|+|+   |++|++++.||.|+||++.+.+........+|...|++++|+|+++.+++++.||.|++||+....  
T Consensus        42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--  119 (368)
T 3mmy_A           42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ--  119 (368)
T ss_dssp             EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--
T ss_pred             eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC--
Confidence            999999999   699999999999999999974444434446899999999999998899999999999999998332  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE--ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL  256 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v  256 (444)
                                             .. .+..|. ..|.+++|  +|++++|++++.|+ .|++||+++++..........+
T Consensus       120 -----------------------~~-~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~  173 (368)
T 3mmy_A          120 -----------------------AI-QIAQHD-APVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSSNPMMVLQLPERC  173 (368)
T ss_dssp             -----------------------EE-EEEECS-SCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCSSCSEEEECSSCE
T ss_pred             -----------------------ce-eecccc-CceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCCcEEEEEecCCCc
Confidence                                   11 234454 89999999  89999999999998 9999999999887766666777


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccCCCceeEEEECCCCCE----EEEEEcCCceEEEEEeecCCC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRM----ILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~----l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      .++.+.+  ..+++++.++.+++||++......   ...+.....++++.++...    ++++ +.++.+..|++.... 
T Consensus       174 ~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~~~~~-  249 (368)
T 3mmy_A          174 YCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG-SIEGRVAIHYINPPN-  249 (368)
T ss_dssp             EEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE-ETTSEEEEEESSCSC-
T ss_pred             eEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe-cCCCcEEEEecCCCC-
Confidence            7777764  578888999999999998765421   2234455666666655543    6655 455777777754321 


Q ss_pred             CcCCCcCCCCcccccccccCC-------------ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  396 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~  396 (444)
                               ....+..+.+|.             .|.+++|+|++++|++++.|      |.|++||+.+++.+     .
T Consensus       250 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d------g~i~iwd~~~~~~~-----~  309 (368)
T 3mmy_A          250 ---------PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD------GRFSFWDKDARTKL-----K  309 (368)
T ss_dssp             ---------HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT------SCEEEEETTTTEEE-----E
T ss_pred             ---------ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC------CeEEEEECCCCcEE-----E
Confidence                     012334444444             59999999999999999998      99999999987665     5


Q ss_pred             eeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .+.+|...|.+++|+|||++     |+.+..+|....+.+
T Consensus       310 ~~~~~~~~v~~~~~s~~g~~-----l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          310 TSEQLDQPISACCFNHNGNI-----FAYASSYDWSKGHEF  344 (368)
T ss_dssp             ECCCCSSCEEEEEECTTSSC-----EEEEECCCSTTCGGG
T ss_pred             EecCCCCCceEEEECCCCCe-----EEEEecccccccccc
Confidence            67789999999999999987     777777776665553

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.6e-32  Score=250.15  Aligned_cols=264  Identities=13%  Similarity=0.238  Sum_probs=206.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      |++++|+|++++||+++.||.|+||++......  ......+|...|++++|+|  ++..+++++.|+.|++||+.....
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence            999999999999999999999999999864221  2222358999999999999  578889999999999999985432


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCceee------
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLGTPI------  249 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~~------  249 (444)
                      ...                ...+.....+..|. ..|.+++|+|+  +++|++++.|+ .|++||+++++....      
T Consensus        94 ~~~----------------~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~  155 (351)
T 3f3f_A           94 ECS----------------GRRWNKLCTLNDSK-GSLYSVKFAPAHLGLKLACLGNDG-ILRLYDALEPSDLRSWTLTSE  155 (351)
T ss_dssp             TTS----------------SCSEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTC-EEEEEECSSTTCTTCCEEEEE
T ss_pred             ccc----------------ccCcceeeeecccC-CceeEEEEcCCCCCcEEEEecCCC-cEEEecCCChHHhcccccccc
Confidence            211                12345666777885 89999999999  99999999998 999999988764321      


Q ss_pred             --------ecCCCCeEEEEEecC---CCeEEEEecCCcEEEEECCCCce---eccccCCCceeEEEECCCC----CEEEE
Q 013347          250 --------RRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMILL  311 (444)
Q Consensus       250 --------~~~~~~v~~~~~sp~---~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g----~~l~~  311 (444)
                              ..+...+.+++|+|+   ++++++++.++.+.+|+...++.   ..+..|...|++++|+|++    ++|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence                    145678999999997   89999999999998888887764   4466899999999999998    66665


Q ss_pred             EEcCCceEEEEEeecCCCCcCC--------------------------------Cc-CCCCcccccccccCC-ceeEEEE
Q 013347          312 AFAGSLTLGSIHFASKPPSLDA--------------------------------HL-LPVDLPDIVSLTGSQ-GIEKIAW  357 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~-~~~~~~~~~~~~~~~-~v~~~~~  357 (444)
                      + +.++.+..|++.........                                .+ .......+..+.+|. .|++++|
T Consensus       236 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          236 G-CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             E-ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             E-cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence            5 55678888887653110000                                00 000124556677787 9999999


Q ss_pred             CCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       358 spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +|++++|++++.|      |.|++|++.+++..
T Consensus       315 s~~~~~l~s~~~d------g~v~iw~~~~~~~~  341 (351)
T 3f3f_A          315 NLTGTILSSAGDD------GKVRLWKATYSNEF  341 (351)
T ss_dssp             CSSSCCEEEEETT------SCEEEEEECTTSCE
T ss_pred             cCCCCEEEEecCC------CcEEEEecCcCcch
Confidence            9999999999998      99999999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-32  Score=281.45  Aligned_cols=323  Identities=11%  Similarity=0.130  Sum_probs=226.3

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+| |++|++++.|++|+|||+.+ ++....+  .|...|++++|+|++..+++++.||.|++||++......
T Consensus        59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-~~~~~~~--~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-QKVLTTV--FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             CCEEEEEEET-TTEEEEEETTCEEEEEETTT-CSEEEEE--ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCEEEEEEcC-CCEEEEEECcCeEEEEECCC-CcEEEEE--cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            4699999999 88999999999999999987 4544444  367899999999999999999999999999998543210


Q ss_pred             ----------eeeccccccccccccCCC-----------Cc--e-----EEEEEeecc-----------------CCCce
Q 013347          180 ----------SVRSGAASFLGALSRGPG-----------TR--W-----TLVDFLRSQ-----------------NGEQI  214 (444)
Q Consensus       180 ----------~~~~~~~~~~~~~~~~~~-----------~~--~-----~~~~~~~~~-----------------~~~~v  214 (444)
                                ....+....+..+.+.++           +.  |     .....+..|                 +...|
T Consensus       135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V  214 (902)
T 2oaj_A          135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKV  214 (902)
T ss_dssp             EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred             ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCe
Confidence                      001112223333333332           11  1     123344433                 12679


Q ss_pred             EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee------c-------------CCCCeEEE----------------
Q 013347          215 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR------R-------------GFGGLSIL----------------  259 (444)
Q Consensus       215 ~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~------~-------------~~~~v~~~----------------  259 (444)
                      .+++|+|+|++|++++.|+ +|++||+++++.....      .             +...|.++                
T Consensus       215 ~~v~fspdg~~lasgs~Dg-~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s  293 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDN-SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS  293 (902)
T ss_dssp             EEEEECTTSSEEEEEETTC-CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence            9999999999999999998 9999998654322100      0             00011111                


Q ss_pred             --------------------------------------------------------------------------------
Q 013347          260 --------------------------------------------------------------------------------  259 (444)
Q Consensus       260 --------------------------------------------------------------------------------  259 (444)
                                                                                                      
T Consensus       294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d  373 (902)
T 2oaj_A          294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN  373 (902)
T ss_dssp             EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred             CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------EEecCCCeEEEE
Q 013347          260 --------------------------------------------------------------------KWSPTGDYFFAA  271 (444)
Q Consensus       260 --------------------------------------------------------------------~~sp~~~~l~~~  271 (444)
                                                                                          +|+|++++|++|
T Consensus       374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg  453 (902)
T 2oaj_A          374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG  453 (902)
T ss_dssp             SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred             CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence                                                                                124556678888


Q ss_pred             ecCCcEEEEECCCCceec---c---------ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc--------
Q 013347          272 KFDGTFYLWETNTWTSEP---W---------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL--------  331 (444)
Q Consensus       272 ~~d~~v~iwd~~~~~~~~---~---------~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~--------  331 (444)
                      +.|++|++||+.+++...   +         .+|...|++++|+|++++|++++ .+++++.|++.......        
T Consensus       454 s~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~~~  532 (902)
T 2oaj_A          454 HSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPESG  532 (902)
T ss_dssp             ETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC----------
T ss_pred             cCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCCCc
Confidence            888889999888775321   1         16788999999999999999775 45788888876531100        


Q ss_pred             C----CC---c-----------------CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          332 D----AH---L-----------------LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       332 ~----~~---~-----------------~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .    ..   +                 ......++..+.+|. .|++++||||| +||+|+.|      ++|+|||+++
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D------~tv~lwd~~~  605 (902)
T 2oaj_A          533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAA------GSLMLIDRRG  605 (902)
T ss_dssp             -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETT------SEEEEEETTT
T ss_pred             ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCC------CcEEEEECCC
Confidence            0    00   0                 000012356777888 99999999999 99999998      9999999988


Q ss_pred             CCeEEEEEeeeee-CCCCCCcceeee-----eCCCCCCCceEEEEeccceeeeeeee
Q 013347          387 TPLISLSLIGFIR-GPGDNPKPVAFS-----FHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       387 ~~~~~~~~~~~~~-~~~~~i~~v~~s-----pdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ..++.......+. +|...|++++||     |||.  .+.+|+.+..||+|.+|++.
T Consensus       606 ~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~~~l~sgs~D~tv~~wd~~  660 (902)
T 2oaj_A          606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SSILMVCGTDMGEVITYKIL  660 (902)
T ss_dssp             TEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EEEEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cceEEEEEecCCcEEEEEEe
Confidence            7665322223454 899999999999     8862  23358999999999999983

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=282.95  Aligned_cols=195  Identities=8%  Similarity=0.099  Sum_probs=145.9

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|++++||+|+.||.|+||+... ..  ......|...|.+++|+| ++.|++++.|++|++||+...+....
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-~~--~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~   94 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-VE--VVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTT   94 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTT-CE--EEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCC-cE--EEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEE
Confidence            499999999999999999999999999875 22  233346888999999999 67899999999999999986654443


Q ss_pred             eeccccccccccccCCCCc----------eEEE-------------------EEeeccCCCceEEEEEccC-CCeEEEEe
Q 013347          181 VRSGAASFLGALSRGPGTR----------WTLV-------------------DFLRSQNGEQITALSWGPD-GRYLASAS  230 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~----------~~~~-------------------~~~~~~~~~~v~~~~~sp~-~~~l~~~~  230 (444)
                      +..  ...+..+.+.+++.          ..++                   ..+.+|. ..|.+++|+|+ +..|++++
T Consensus        95 ~~~--~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~-~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           95 VFV--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL-SPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEC--SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC-CCCCEEEEETTEEEEEEEEC
T ss_pred             EcC--CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC-CCeEEEEEccCCCCEEEEEe
Confidence            321  12223333333322          2222                   1224454 78999999996 57888999


Q ss_pred             eCCCeEEEEEcCCCCceeeec-C------------------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--
Q 013347          231 YESSSFTIWDVAQGLGTPIRR-G------------------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--  289 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~~~~~~~-~------------------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--  289 (444)
                      .|+ .| +||+++++...... +                  ...|.+++|+|+|++|++++.|+.|++||+++++...  
T Consensus       172 ~dg-~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r  249 (902)
T 2oaj_A          172 EYV-TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMAR  249 (902)
T ss_dssp             SSC-EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             CCC-cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEE
Confidence            897 99 99999887654332 2                  3679999999999999999999999999999887632  


Q ss_pred             -cc---c-------------CCCceeEEEECC
Q 013347          290 -WS---S-------------TSGFVTGATWDP  304 (444)
Q Consensus       290 -~~---~-------------~~~~v~~~~~sp  304 (444)
                       +.   .             |...|++++|++
T Consensus       250 ~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          250 TVFETEINVPQPDYIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             CSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred             eecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence             21   1             345799999953

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=255.78  Aligned_cols=246  Identities=15%  Similarity=0.253  Sum_probs=197.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      |++++|+|++++||+++.||.|+||++............+|...|++++|+++  +..+++++.||.|++||+...    
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----   89 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----   89 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT----
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC----
Confidence            99999999999999999999999999984322222233589999999999977  788999999999999999832    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCCc---eeeecCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGLG---TPIRRGFG  254 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~---~~~~~~~~  254 (444)
                                         .+.....+..|. ..|.+++|+|+  +++|++++.|+ .|++||+.....   ..+..|..
T Consensus        90 -------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           90 -------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             -------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSCCCEEEEECCTT
T ss_pred             -------------------ceeEeeeecCCC-cceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCceeeEEecCCCC
Confidence                               233455666775 89999999999  99999999998 999999988743   23557889


Q ss_pred             CeEEEEEec-------------CCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCC---CCEEEEEE
Q 013347          255 GLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILLAF  313 (444)
Q Consensus       255 ~v~~~~~sp-------------~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---g~~l~~~~  313 (444)
                      .|.+++|+|             ++++|++++.|+.|++||+++++.     ..+..|...|.+++|+|+   +++++++ 
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~-  227 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV-  227 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE-
Confidence            999999999             699999999999999999987653     345689999999999999   7777765 


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      +.++.+..|++......        ....+.....|. .|.+++|+|+|++|++++.|      |.|++|++..+
T Consensus       228 ~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~  288 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENLE  288 (379)
T ss_dssp             ETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEECSSSCCEEEEESS------SSEEEEEEEET
T ss_pred             eCCCEEEEEeCCCCCcc--------ceeeeeccccCCCcEEEEEEcCCCCEEEEecCC------CcEEEEeCCCC
Confidence            45577777776432100        011122223355 89999999999999999998      99999999843

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-32  Score=295.50  Aligned_cols=278  Identities=13%  Similarity=0.188  Sum_probs=231.0

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|+|++||+|+.||.|+|||+.+ +.....+ .+|...|.+++|+|+++.+++++.|+.|++||+.++    
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----  689 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDI-KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG----  689 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCEEEEe-ccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC----
Confidence            4699999999999999999999999999987 5555555 589999999999999989999999999999999833    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                           .+...+.+|. ..|.+++|+|  ++.++++++.|+ .|++||+.+++... +..|...|
T Consensus       690 ---------------------~~~~~~~~~~-~~v~~~~~~~~~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~~~h~~~v  746 (1249)
T 3sfz_A          690 ---------------------KLVHTYDEHS-EQVNCCHFTNKSNHLLLATGSNDF-FLKLWDLNQKECRNTMFGHTNSV  746 (1249)
T ss_dssp             ---------------------CEEEEEECCS-SCEEEEEECSSSSCCEEEEEETTS-CEEEEETTSSSEEEEECCCSSCE
T ss_pred             ---------------------ceEEEEcCCC-CcEEEEEEecCCCceEEEEEeCCC-eEEEEECCCcchhheecCCCCCE
Confidence                                 2445667775 8999999999  556889999998 99999999988665 56788999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-------------cCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-------------STSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      .+++|+|++++|++++.||.|++||+++++... +.             .....+.+++|+|+|+.+++++.  +.+..|
T Consensus       747 ~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~~~  824 (1249)
T 3sfz_A          747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLF  824 (1249)
T ss_dssp             EEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEEEE
Confidence            999999999999999999999999998876522 11             12346889999999999998764  456666


Q ss_pred             EeecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                      ++..             ...+..+. +|. .|.+++|+|+++++++++.+      +.|++||+.++...     ..+.+
T Consensus       825 d~~~-------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------g~v~vwd~~~~~~~-----~~~~~  880 (1249)
T 3sfz_A          825 DIHT-------------SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ------YCVELWNIDSRLKV-----ADCRG  880 (1249)
T ss_dssp             ETTT-------------CCEEEEEECSSSSCCCEEEECSSTTEEEEECSS------SCEEEEETTTTEEE-----EEECC
T ss_pred             EecC-------------CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCcee-----eecCC
Confidence            5422             22233333 555 89999999999999999988      99999999987654     56789


Q ss_pred             CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          401 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       401 ~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      |...|.+++|+|+|++     ++.+..+|.|.+|++.
T Consensus       881 h~~~v~~v~~spdg~~-----l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSS-----FLTASDDQTIRVWETK  912 (1249)
T ss_dssp             CSSCEEEEEECTTSSE-----EEEEETTSCEEEEEHH
T ss_pred             CccceEEEEECCCCCE-----EEEEeCCCeEEEEEcc
Confidence            9999999999999876     7788899999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-32  Score=251.22  Aligned_cols=244  Identities=17%  Similarity=0.281  Sum_probs=182.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCC-----CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-----~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      .|++++|+|++++||+++.|++|+||++....     ........+|...|.+++|+|++..|++++.|++|++||+...
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            59999999999999999999999999986421     1122233689999999999999999999999999999999522


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC--ce-eeecC
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL--GT-PIRRG  252 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~--~~-~~~~~  252 (444)
                      +.                     .+.+...+.+|. ..|.+++|+|++++|++++.|+ +|++||..++.  +. .+..|
T Consensus       140 ~~---------------------~~~~~~~~~~h~-~~v~~v~~~p~~~~l~s~s~D~-~i~iW~~~~~~~~~~~~~~~h  196 (330)
T 2hes_X          140 GE---------------------EYECISVLQEHS-QDVKHVIWHPSEALLASSSYDD-TVRIWKDYDDDWECVAVLNGH  196 (330)
T ss_dssp             CC---------------------CCEEEEEECCCS-SCEEEEEECSSSSEEEEEETTS-CEEEEEEETTEEEEEEEECCC
T ss_pred             CC---------------------CeEEEEEeccCC-CceEEEEECCCCCEEEEEcCCC-eEEEEECCCCCeeEEEEccCC
Confidence            11                     123556678885 8999999999999999999998 99999998762  33 35578


Q ss_pred             CCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCc--------e-ecccc-CCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          253 FGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWT--------S-EPWSS-TSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       253 ~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~--------~-~~~~~-~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      ...|.+++|+|+  +.+|++++.|++|++||++++.        . ..+.. |...|.+++|++++ +|+++ +.++.+.
T Consensus       197 ~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~-~~dg~v~  274 (330)
T 2hes_X          197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASV-GADGVLA  274 (330)
T ss_dssp             SSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEE-ETTSCEE
T ss_pred             CCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEE-eCCCEEE
Confidence            899999999998  6789999999999999987642        1 22333 88999999999776 55655 4557777


Q ss_pred             EEEeecCCCCcCCCcCCCCcccc-cccccCC--ceeEEEECC--CCCEEEEEecCCCccccceEEEEEcCC
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDI-VSLTGSQ--GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~~~~sp--dg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .|+....           ..... ....+|.  .|.+++|+|  ++++|++++.|      ++|+||+++.
T Consensus       275 iw~~~~~-----------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D------g~v~~W~~~~  328 (330)
T 2hes_X          275 VYEEVDG-----------EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD------GIVNFWSLEK  328 (330)
T ss_dssp             EEEEETT-----------EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT------SEEEEEEC--
T ss_pred             EEEcCCC-----------ceEEEeccccccccceEEEEEEecCCCceEEEEecCC------CcEEEEEecc
Confidence            7775321           01111 2234554  799999999  78999999998      9999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.8e-32  Score=254.16  Aligned_cols=286  Identities=14%  Similarity=0.178  Sum_probs=213.0

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEe------------cCCCCCeEEEEEee-CCCeEEEEecCCc
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILT------------SDSQRDVKVLEWRP-NGGRSLSVGCKGG  166 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~------------~~~~~~v~~l~~s~-~~~~ll~~~~dg~  166 (444)
                      .|++++|+| ++++||+++.||.|++|++.+. .......            .+|...|.+++|+| ++..+++++.|+.
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~  123 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT  123 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCC-SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCC-cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence            499999999 9999999999999999999974 2222221            25999999999999 6567888888999


Q ss_pred             EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC---CCeEEEEeeCCCeEEEEEcCC
Q 013347          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      |++||+....                         ....+. + ...+.++.|+|.   +.++++++.++ .|++||+++
T Consensus       124 i~iwd~~~~~-------------------------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~  175 (408)
T 4a11_B          124 LKVWDTNTLQ-------------------------TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDLKS  175 (408)
T ss_dssp             EEEEETTTTE-------------------------EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSS-SEEEEESSS
T ss_pred             EEEeeCCCCc-------------------------cceecc-C-CCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeCCC
Confidence            9999998432                         222233 2 368899999984   45899999998 999999998


Q ss_pred             CCcee-eecCCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCce--ec---------------cccCCCceeEEEECC
Q 013347          244 GLGTP-IRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTS--EP---------------WSSTSGFVTGATWDP  304 (444)
Q Consensus       244 ~~~~~-~~~~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~--~~---------------~~~~~~~v~~~~~sp  304 (444)
                      ++... +..|...|.+++|+|++++ |++++.||.|++||++++..  ..               ...|...|.+++|+|
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            87665 5568899999999999985 88999999999999987652  11               246888999999999


Q ss_pred             CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      ++++|++++. ++.+..|++........     .... ... .....+........+..+++++.+      +.|++||+
T Consensus       256 ~~~~l~~~~~-dg~i~vwd~~~~~~~~~-----~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~d~  321 (408)
T 4a11_B          256 DGLHLLTVGT-DNRMRLWNSSNGENTLV-----NYGK-VCN-NSKKGLKFTVSCGCSSEFVFVPYG------STIAVYTV  321 (408)
T ss_dssp             TSSEEEEEET-TSCEEEEETTTCCBCCC-----CCCC-CCC-CCSSCCCCEECCSSSSCEEEEEET------TEEEEEET
T ss_pred             CCCEEEEecC-CCeEEEEECCCCcccee-----cccc-ccc-cccccceeEEecCCCceEEEEecC------CEEEEEEC
Confidence            9999997654 46677777643211000     0000 000 001122222223334556666666      89999999


Q ss_pred             CCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          385 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      .+++.+     ..+.+|...|++++|+|+|++     |+.+..+|.|++|++...
T Consensus       322 ~~~~~~-----~~~~~~~~~v~~~~~s~~~~~-----l~s~~~dg~i~iw~~~~~  366 (408)
T 4a11_B          322 YSGEQI-----TMLKGHYKTVDCCVFQSNFQE-----LYSGSRDCNILAWVPSLY  366 (408)
T ss_dssp             TTCCEE-----EEECCCSSCEEEEEEETTTTE-----EEEEETTSCEEEEEECC-
T ss_pred             cCCcce-----eeeccCCCeEEEEEEcCCCCE-----EEEECCCCeEEEEeCCCC
Confidence            987765     567899999999999999876     788889999999998643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.9e-33  Score=253.60  Aligned_cols=252  Identities=14%  Similarity=0.168  Sum_probs=195.6

Q ss_pred             EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      ...+|.+.|++++|+|+|+.|++++.|++|+|||+...                       ...+...+.+|. ..|.++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~-----------------------~~~~~~~l~gH~-~~V~~v   63 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG-----------------------GQILIADLRGHE-GPVWQV   63 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC-----------------------CcEEEEEEcCCC-ccEEEE
Confidence            33589999999999999999999999999999998732                       112455688886 899999


Q ss_pred             EEcc--CCCeEEEEeeCCCeEEEEEcCCCCce---eeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---
Q 013347          218 SWGP--DGRYLASASYESSSFTIWDVAQGLGT---PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---  287 (444)
Q Consensus       218 ~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---  287 (444)
                      +|++  ++++|++++.|+ +|++||+++++..   .+..|...|.+++|+|+  +.+|++++.|+.|++||++++..   
T Consensus        64 ~~~~~~~~~~l~s~s~D~-~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           64 AWAHPMYGNILASCSYDR-KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV  142 (316)
T ss_dssp             EECCGGGSSCEEEEETTS-CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred             EeCCCCCCCEEEEEECCC-EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence            9986  489999999998 9999999987432   24468899999999998  78999999999999999987632   


Q ss_pred             -eccccCCCceeEEEECCC-----------------CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347          288 -EPWSSTSGFVTGATWDPE-----------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  349 (444)
Q Consensus       288 -~~~~~~~~~v~~~~~sp~-----------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (444)
                       ..+..|...+.+++|+|+                 +++|+++ +.++.++.|++....          ....+..+.+|
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~----------~~~~~~~l~~h  211 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEEDG----------QWKEEQKLEAH  211 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-BTTSBCCEEEECTTS----------CEEEEECCBCC
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-cCCCeEEEEEeCCCC----------ccceeeecccC
Confidence             345688899999999998                 3566654 556777777763210          12345677888


Q ss_pred             C-ceeEEEECCCC----CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE
Q 013347          350 Q-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV  424 (444)
Q Consensus       350 ~-~v~~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~  424 (444)
                      . .|.+++|+|++    ++|++++.|      ++|++|++.+..... .....+.+|...|++++|+|+|++     |+.
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D------~~v~iw~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~g~~-----las  279 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQD------GRVFIWTCDDASSNT-WSPKLLHKFNDVVWHVSWSITANI-----LAV  279 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETT------CEEEEEECSSTTCCC-CBCCEEEECSSCEEEEEECTTTCC-----EEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCC------CeEEEEEccCccccc-hhhhhhhcCCCcEEEEEEcCCCCE-----EEE
Confidence            8 89999999987    899999998      999999997631100 001234568889999999999886     788


Q ss_pred             Eeccceeeeeeee
Q 013347          425 CWSSGFCCTYPLI  437 (444)
Q Consensus       425 ~~~~g~i~~~~~~  437 (444)
                      +..||.|.+|+..
T Consensus       280 ~~~D~~v~lw~~~  292 (316)
T 3bg1_A          280 SGGDNKVTLWKES  292 (316)
T ss_dssp             EESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEEC
Confidence            8899999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=3.3e-32  Score=256.23  Aligned_cols=291  Identities=15%  Similarity=0.192  Sum_probs=214.1

Q ss_pred             eEEEEEecCCCeEE-EEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCC
Q 013347          102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       102 v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ...++++|+...++ +++.||.|+||++...+..  ......+|.+.|++++|+| ++..+++++.||.|++|++...+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            45688898876554 4688999999999764321  1122358999999999999 877888888899999999985533


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCCCceeee---cCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQGLGTPIR---RGF  253 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~~~~~~~---~~~  253 (444)
                      .....                  .....+.+|. ..|.+++|+|++ ++|++++.|+ .|++||+++++.....   .|.
T Consensus       117 ~~~~~------------------~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~  176 (402)
T 2aq5_A          117 VLPLR------------------EPVITLEGHT-KRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGTGAAVLTLGPDVHP  176 (402)
T ss_dssp             SSCBC------------------SCSEEEECCS-SCEEEEEECSSBTTEEEEEETTS-CEEEEETTTTEEEEEECTTTCC
T ss_pred             ccccC------------------CceEEecCCC-CeEEEEEECcCCCCEEEEEcCCC-EEEEEECCCCCccEEEecCCCC
Confidence            22111                  1234567775 899999999998 6999999998 9999999998776544   578


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-cc-ccCCCc-eeEEEECCCCCEEEEEE--cCCceEEEEEeecCC
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW-SSTSGF-VTGATWDPEGRMILLAF--AGSLTLGSIHFASKP  328 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~-~~~~~~-v~~~~~sp~g~~l~~~~--~~~~~~~~~~~~~~~  328 (444)
                      ..|.+++|+|++++|++++.|+.|++||+++++.. .+ ..|.+. +.++.|+|++++++++.  ..++.+..|++....
T Consensus       177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            99999999999999999999999999999998873 34 567665 89999999999888764  445566666543210


Q ss_pred             CCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe-cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcc
Q 013347          329 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP  407 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~  407 (444)
                                .......+..+..+..++|+|++++|++++ .|      +.|++||+.+++.. ...+..+. |...|.+
T Consensus       257 ----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d------g~i~i~d~~~~~~~-~~~l~~~~-~~~~v~~  318 (402)
T 2aq5_A          257 ----------EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD------SSIRYFEITSEAPF-LHYLSMFS-SKESQRG  318 (402)
T ss_dssp             ----------SCSEEEECCCCSSCEEEEEETTTTEEEEEETTC------SCEEEEEECSSTTC-EEEEEEEC-CSSCCSE
T ss_pred             ----------CCceEEeccCCCceeEEEEcCCCCEEEEEEcCC------CeEEEEEecCCCcc-eEeecccc-cCCcccc
Confidence                      000111222333899999999999997655 46      99999999987731 11122222 6688999


Q ss_pred             eeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          408 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       408 v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ++|+|++++...       .++.+.+|.+.
T Consensus       319 ~~~sp~~~~~~s-------~~~~~~~~~l~  341 (402)
T 2aq5_A          319 MGYMPKRGLEVN-------KCEIARFYKLH  341 (402)
T ss_dssp             EEECCGGGSCGG-------GTEEEEEEEEE
T ss_pred             eEEeccccccee-------cceeEEEEEcC
Confidence            999999987322       34455555543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.5e-31  Score=253.32  Aligned_cols=268  Identities=15%  Similarity=0.181  Sum_probs=216.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      +.++.+  ++++|++|+.||.|++||+.+ ++....+ .+|.+.|++++|+|++ .+++++.||+|++||+++.      
T Consensus       125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~-~~~~~~~-~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~------  193 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGADDKMIRVYDSIN-KKFLLQL-SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG------  193 (464)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT------
T ss_pred             EEEEEE--CCCEEEEEcCCCcEEEEECCC-CcEEEEE-eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC------
Confidence            455555  578999999999999999987 4544444 5899999999999985 8889999999999999832      


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEc--cCCCeEEEEeeCCCeEEEEEcCCCCce------------
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVAQGLGT------------  247 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~~i~iwd~~~~~~~------------  247 (444)
                                         .....+.+|. ..|.+++|+  ++++++++++.|+ .|++||+.++...            
T Consensus       194 -------------------~~~~~~~~h~-~~v~~l~~~~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          194 -------------------CCTHVFEGHN-STVRCLDIVEYKNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             -------------------EEEEEECCCS-SCEEEEEEEESSSCEEEEEEETTS-CEEEEECCCCCCC------CCSSEE
T ss_pred             -------------------cEEEEECCCC-CccEEEEEecCCCCCEEEEEcCCC-cEEEeeCCCCcccccccccCCcceE
Confidence                               2455677775 899999998  5789999999998 9999999877532            


Q ss_pred             ------------eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEc
Q 013347          248 ------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       248 ------------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                                  ....|...+.++  +++++++++++.|+.|++||+++++. ..+.+|...+.+++|+|+++++++++ 
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-  329 (464)
T 3v7d_B          253 FHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-  329 (464)
T ss_dssp             ESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-
T ss_pred             eeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-
Confidence                        234456677665  67899999999999999999999887 45678999999999999999998765 


Q ss_pred             CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347          315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  393 (444)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~  393 (444)
                      .++.+..|++.             +...+.++.+|. .|.+++|+  +++|++++.|      |.|++||+.++....  
T Consensus       330 ~dg~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d------g~v~vwd~~~~~~~~--  386 (464)
T 3v7d_B          330 MDTTIRIWDLE-------------NGELMYTLQGHTALVGLLRLS--DKFLVSAAAD------GSIRGWDANDYSRKF--  386 (464)
T ss_dssp             TTSCEEEEETT-------------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEE--
T ss_pred             CCCcEEEEECC-------------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC------CcEEEEECCCCceee--
Confidence            44667777653             345677788888 89999997  5899999998      999999999866441  


Q ss_pred             EeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          394 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       394 ~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                         . ..+...+..++|+|++++     ++.+. +|.|.+|++.
T Consensus       387 ---~-~~~~~~~~~~~~~~~~~~-----l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          387 ---S-YHHTNLSAITTFYVSDNI-----LVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             ---E-EECTTCCCEEEEEECSSE-----EEEEE-TTEEEEEETT
T ss_pred             ---e-ecCCCCccEEEEEeCCCE-----EEEec-CCeEEEEECC
Confidence               1 135667788899999875     66665 8999999874

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-31  Score=241.60  Aligned_cols=238  Identities=18%  Similarity=0.304  Sum_probs=193.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.+++|+|++++|++++.|+.|++||+.+ ++....+ .+|...|.+++|+|+++.+++++.|+.|++||+....    
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----  140 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSS-GKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK----  140 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC----
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCC-CcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE----
Confidence            599999999999999999999999999987 4444444 5899999999999999899999999999999998332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~  258 (444)
                                           ....+..|. ..|.+++|+|++++|++++.|+ .|++||+++++.....  .+...+..
T Consensus       141 ---------------------~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~  197 (312)
T 4ery_A          141 ---------------------CLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSF  197 (312)
T ss_dssp             ---------------------EEEEECCCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCSSCCCEEE
T ss_pred             ---------------------EEEEecCCC-CcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeeEEeccCCCceEE
Confidence                                 344566664 7899999999999999999998 9999999988766533  34578999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCcee--EEEEC-CCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT--GATWD-PEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~--~~~~s-p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ++|+|++++|++++.|+.|++||+++++. ..+.+|.....  ...++ +++.+++++ +.++.+..|++.         
T Consensus       198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-~~dg~i~vwd~~---------  267 (312)
T 4ery_A          198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG-SEDNLVYIWNLQ---------  267 (312)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC-CTTSCEEEEETT---------
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE-CCCCEEEEEECC---------
Confidence            99999999999999999999999999876 34555554432  23344 567777754 556777777753         


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                          ....+..+.+|. .|.+++|+|++++|++++.+.    |++|++|+.+
T Consensus       268 ----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~----d~~i~~W~~d  311 (312)
T 4ery_A          268 ----TKEIVQKLQGHTDVVISTACHPTENIIASAALEN----DKTIKLWKSD  311 (312)
T ss_dssp             ----TCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT----TCCEEEEECC
T ss_pred             ----CchhhhhhhccCCcEEEEeecCcCCceEEEEccC----CccEEEecCC
Confidence                345567788888 899999999999999998432    2999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4e-32  Score=273.57  Aligned_cols=252  Identities=15%  Similarity=0.212  Sum_probs=190.4

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|++++|++|+.|++|+|||+.+ +.....+ .+|...|.+++|+|+++.+++++.|++|++||+.... ..
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~  507 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAA-GVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KY  507 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCC-CcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ce
Confidence            4699999999999999999999999999987 4444444 5899999999999999999999999999999975211 11


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                      .+                     .....+|. ..|.+++|+|++  ..|++++.|+ +|++||+++++... +..|.+.|
T Consensus       508 ~~---------------------~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~d~-~v~vwd~~~~~~~~~~~~h~~~v  564 (694)
T 3dm0_A          508 TI---------------------SEGGEGHR-DWVSCVRFSPNTLQPTIVSASWDK-TVKVWNLSNCKLRSTLAGHTGYV  564 (694)
T ss_dssp             EE---------------------CSSTTSCS-SCEEEEEECSCSSSCEEEEEETTS-CEEEEETTTCCEEEEECCCSSCE
T ss_pred             ee---------------------ccCCCCCC-CcEEEEEEeCCCCcceEEEEeCCC-eEEEEECCCCcEEEEEcCCCCCE
Confidence            10                     01123454 789999999987  5799999998 99999999887665 55688999


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC--CcCCC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAH  334 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~  334 (444)
                      .+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|++.+++++.+  ..+..|++.....  .+..+
T Consensus       565 ~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--~~i~iwd~~~~~~~~~~~~~  642 (694)
T 3dm0_A          565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE--HGIKIWDLESKSIVEDLKVD  642 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEET--TEEEEEETTTTEEEEEECCC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcC--CCEEEEECCCCCChhhhccc
Confidence            9999999999999999999999999999887555556678999999999998887654  3355565432110  00000


Q ss_pred             cCCC----CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          335 LLPV----DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       335 ~~~~----~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ....    ..........+. .+++++|+|||++|++|+.|      |+|+||++.
T Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D------g~i~iW~i~  692 (694)
T 3dm0_A          643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD------GVIRVWGIG  692 (694)
T ss_dssp             CC----------------CCCCEEEEEECTTSSEEEEEETT------SEEEEEEC-
T ss_pred             cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC------CeEEEEecc
Confidence            0000    000000001111 47899999999999999999      999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-31  Score=250.46  Aligned_cols=244  Identities=17%  Similarity=0.268  Sum_probs=198.9

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|++++|++++.||.|++|++.+ ++....+ .+|...|.+++|+  +..+++++.|+.|++||+.....  
T Consensus       135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--  208 (401)
T 4aez_A          135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLRTM-AGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH--  208 (401)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--
T ss_pred             CCEEEEEECCCCCEEEEECCCCeEEEEECcC-CeEEEEe-cCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--
Confidence            3699999999999999999999999999987 4444444 5899999999994  46888889999999999973322  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                            ....+.+|. ..|.+++|+|++++|++++.|+ .|++||+++++... +..|...|.+
T Consensus       209 ----------------------~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          209 ----------------------QIGTLQGHS-SEVCGLAWRSDGLQLASGGNDN-VVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             ----------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             ----------------------eeeEEcCCC-CCeeEEEEcCCCCEEEEEeCCC-eEEEccCCCCCccEEecCCcceEEE
Confidence                                  334566775 8999999999999999999998 99999999887665 4568899999


Q ss_pred             EEEecCCCeE-EEEe--cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCcCCC
Q 013347          259 LKWSPTGDYF-FAAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       259 ~~~sp~~~~l-~~~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ++|+|++..+ ++++  .|+.|++||+++++......+...+.+++|+|+++++++++ ..++.+..|++...       
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-------  337 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-------  337 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------
Confidence            9999987555 5554  69999999999998866556788999999999999999764 35677888876431       


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                          .......+.+|. .|.+++|+|+|++|++++.|      |.|++|++.+++.+
T Consensus       338 ----~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d------g~i~iw~~~~~~~~  384 (401)
T 4aez_A          338 ----GLTKQVDIPAHDTRVLYSALSPDGRILSTAASD------ENLKFWRVYDGDHV  384 (401)
T ss_dssp             ----EEEEEEEEECCSSCCCEEEECTTSSEEEEECTT------SEEEEEECCC----
T ss_pred             ----cceeEEEecCCCCCEEEEEECCCCCEEEEEeCC------CcEEEEECCCCccc
Confidence                122334466777 89999999999999999998      99999999987765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=249.75  Aligned_cols=252  Identities=16%  Similarity=0.181  Sum_probs=205.2

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|++++|+|+++.+++++.||.|++|++...                       .......+.+|. ..|.+++|
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~   63 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------------------THKLIDTLTGHE-GPVWRVDW   63 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------------------EEEEEEEECCCS-SCEEEEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------------------cceeeeEecCCC-CcEEEEEe
Confidence            589999999999999888888889999999999621                       224556778885 89999999


Q ss_pred             ccC--CCeEEEEeeCCCeEEEEEcCCCC--ce-eeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---ec
Q 013347          220 GPD--GRYLASASYESSSFTIWDVAQGL--GT-PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---EP  289 (444)
Q Consensus       220 sp~--~~~l~~~~~d~~~i~iwd~~~~~--~~-~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---~~  289 (444)
                      +++  +++|++++.|+ .|++||+.+++  .. ....|...|.+++|+|+  +++|++++.|+.|++||++++..   ..
T Consensus        64 ~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  142 (379)
T 3jrp_A           64 AHPKFGTILASCSYDG-KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII  142 (379)
T ss_dssp             CCGGGCSEEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred             CCCCCCCEEEEeccCC-EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence            987  99999999998 99999999885  22 34557899999999999  99999999999999999998743   34


Q ss_pred             cccCCCceeEEEECC-------------CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE
Q 013347          290 WSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI  355 (444)
Q Consensus       290 ~~~~~~~v~~~~~sp-------------~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  355 (444)
                      +..|...|.+++|+|             ++.++++++ .++.+..|++.....         ....+..+.+|. .|.++
T Consensus       143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---------~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             EECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEEE
T ss_pred             ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCc---------ceeeEEEEecccCcEeEE
Confidence            568999999999999             688888664 446788887753210         123445677787 89999


Q ss_pred             EECCC---CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          356 AWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       356 ~~spd---g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      +|+|+   +++|++++.|      +.|++||+.++.............|...|++++|+|+|++     |+++..+|.|.
T Consensus       213 ~~sp~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~dg~i~  281 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKVT  281 (379)
T ss_dssp             EECCCCSSSEEEEEEETT------SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-----EEEEESSSSEE
T ss_pred             EECCCCCCCCeEEEEeCC------CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-----EEEecCCCcEE
Confidence            99999   8999999998      9999999998653222222233458888999999999986     77788899999


Q ss_pred             eeeee
Q 013347          433 TYPLI  437 (444)
Q Consensus       433 ~~~~~  437 (444)
                      +|++.
T Consensus       282 iw~~~  286 (379)
T 3jrp_A          282 LWKEN  286 (379)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            99987

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.6e-31  Score=263.94  Aligned_cols=300  Identities=12%  Similarity=0.116  Sum_probs=224.6

Q ss_pred             ceEEEEEecC-CCeEEEEECCCeEEEEEccCCCCceeEEec---CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      .|++++|+|+ +++|++++.||.|++||+.+ ++....+..   .|...|.+++|+ ++..+++++.|+.|++||+....
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence            6999999999 99999999999999999987 455444434   899999999999 88889999999999999998654


Q ss_pred             Ccceeecccc---cccc--------c-cccCCCCc--------eEEEEEeeccC--------------------------
Q 013347          177 NAASVRSGAA---SFLG--------A-LSRGPGTR--------WTLVDFLRSQN--------------------------  210 (444)
Q Consensus       177 ~~~~~~~~~~---~~~~--------~-~~~~~~~~--------~~~~~~~~~~~--------------------------  210 (444)
                      ....+.....   ....        . +..+.++.        ......+.+|.                          
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          286 CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred             EEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence            4333322100   0000        0 01111111        12233444442                          


Q ss_pred             ------CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC----------------------------------CCceeee
Q 013347          211 ------GEQITALSWGPDGRYLASASYESSSFTIWDVAQ----------------------------------GLGTPIR  250 (444)
Q Consensus       211 ------~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~----------------------------------~~~~~~~  250 (444)
                            ...|.+++| ++++.|++++.|+ .|++||+.+                                  ++.....
T Consensus       366 ~~~~~~~~~v~~~~~-~~~~~l~~~~~d~-~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (615)
T 1pgu_A          366 SMHQDHSNLIVSLDN-SKAQEYSSISWDD-TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV  443 (615)
T ss_dssp             EEECCCCSCEEEEEC-CSTTCCEEEETTT-EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             hhcCcccCceEEEEE-CCCcEEEEEeCCC-CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec
Confidence                  244555555 4467777888777 888877653                                  2333333


Q ss_pred             cCCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          251 RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      .+...+.+++|+  +++|++++. |+.|++||+.+++.  ..+..|...|++++|+|++++|++++. ++.+..|++.  
T Consensus       444 ~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~--  518 (615)
T 1pgu_A          444 RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV-MGKILLYDLQ--  518 (615)
T ss_dssp             ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETT--
T ss_pred             ccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC-CCeEEEeeCC--
Confidence            467788999998  889999999 99999999998877  566789999999999999999997754 4667777653  


Q ss_pred             CCCcCCCcCCCCccccccccc-CC-ceeEEEECC----------CCCEEEEEecCCCccccceEEEEEcCCC-CeEEEEE
Q 013347          328 PPSLDAHLLPVDLPDIVSLTG-SQ-GIEKIAWDA----------SGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSL  394 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~sp----------dg~~l~~~~~d~~~~~d~~i~vwd~~~~-~~~~~~~  394 (444)
                                 +...+..+.+ |. .|++++|+|          ++++|++++.|      +.|++||+.++ +.+    
T Consensus       519 -----------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~----  577 (615)
T 1pgu_A          519 -----------SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------TNIFIYSVKRPMKII----  577 (615)
T ss_dssp             -----------TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------SCEEEEESSCTTCCE----
T ss_pred             -----------CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC------CcEEEEECCCCceec----
Confidence                       3444556666 77 999999999          99999999998      99999999986 333    


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                       ..+.+|...|++++|+|||+      |+.+..+|.|.+|++.
T Consensus       578 -~~~~~h~~~v~~l~~s~~~~------l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          578 -KALNAHKDGVNNLLWETPST------LVSSGADACIKRWNVV  613 (615)
T ss_dssp             -EETTSSTTCEEEEEEEETTE------EEEEETTSCEEEEEEC
T ss_pred             -hhhhcCccceEEEEEcCCCC------eEEecCCceEEEEeee
Confidence             56789999999999999974      5667789999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.8e-32  Score=254.62  Aligned_cols=246  Identities=16%  Similarity=0.268  Sum_probs=197.9

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|++++|+|+++.|++++.|++|+|||+.+.                         .....+..|. ..|.+++|
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-------------------------~~~~~~~~h~-~~v~~~~~  116 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-------------------------QKTHAIKLHC-PWVMECAF  116 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------------------------EEEEEEECCC-TTCCCCEE
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------ccceEEecCC-CCEEEEEE
Confidence            699999999999999999999999999999998732                         2445667775 78999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCC--------ceeeecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCceec-
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGL--------GTPIRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP-  289 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~--------~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~-  289 (444)
                      +|+|++|++++.|+ .+++||+.+..        ...+.+|.+.+.+++|+|+ +..|++|+.|++|++||+++++... 
T Consensus       117 s~~g~~las~~~d~-~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          117 APNGQSVACGGLDS-ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             CTTSSEEEECCSSS-CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             CCCCCEEEEeeCCC-cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence            99999999999998 99999997532        1235678889999999997 4579999999999999999987632 


Q ss_pred             c-----ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC
Q 013347          290 W-----SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE  362 (444)
Q Consensus       290 ~-----~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~  362 (444)
                      +     .+|...+.+++|++ ++.+++++ +.++.+..|++..            ....+..+.+|. .|.+++|+|+|+
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sg-s~D~~v~~wd~~~------------~~~~~~~~~~h~~~v~~v~~~p~~~  262 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISG-SCDTTVRLWDLRI------------TSRAVRTYHGHEGDINSVKFFPDGQ  262 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEE-ETTSCEEEEETTT------------TCCCCEEECCCSSCCCEEEECTTSS
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEE-ECCCeEEEEECCC------------CCcceEEECCcCCCeEEEEEecCCC
Confidence            2     47889999999987 67777755 4557777777532            234566788888 999999999999


Q ss_pred             EEEEEecCCCccccceEEEEEcCCCCeEEEEEeee--eeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF--IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +|++++.|      ++|++||+++++.+.......  ...+...|++++|+|+|++     +++|..+|.|.+|++
T Consensus       263 ~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          263 RFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL-----LFAGYSNGDCYVWDT  327 (380)
T ss_dssp             EEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-----EEEECTTSCEEEEET
T ss_pred             eEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCE-----EEEEECCCCEEEEEC
Confidence            99999998      999999999877652211100  0112234899999999886     888999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=258.84  Aligned_cols=259  Identities=9%  Similarity=0.100  Sum_probs=195.6

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|.+++|+|||+++|+++.|++|+  +... .   ..+ .+|...|++++|+|+|       .++.+.+|+.+   ...
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~-~---~~l-~gh~~~v~~V~FsPdg-------~~~~~~~~~~~---~~~   78 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKY-A---KDI-NCNSKNLFHVKEFPLE-------FENKLDFELAQ---QNG   78 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECC-C---SCC-SSBGGGTEEEEEECCC-------CCCTTTTSCCC---SSC
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--cccc-c---cee-cCCCccEEEEEECCCC-------CcceEEEEeCC---Cce
Confidence            4699999999999999999999999  6443 2   222 5899999999999996       45655555543   111


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-----
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-----  254 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-----  254 (444)
                      .+.                       + .| ...|.+++|||+|++||+++.|| .|++||.+.  ......|..     
T Consensus        79 ~~~-----------------------~-~~-~~~V~~vawSPdG~~LAs~s~dg-~V~iwd~~~--~l~~l~~~~~~~~~  130 (588)
T 2j04_A           79 LLN-----------------------S-QP-VCYPRVCKPSPIDDWMAVLSNNG-NVSVFKDNK--MLTNLDSKGNLSSR  130 (588)
T ss_dssp             SST-----------------------T-SC-SCCEEEEEECSSSSCEEEEETTS-CEEEEETTE--EEEECCCSSCSTTT
T ss_pred             Eee-----------------------c-CC-CCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCc--eeeeccCCCccccc
Confidence            111                       0 22 47899999999999999999998 999999654  333323443     


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce--------ecc----ccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--------EPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--------~~~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      .+.+++|||||++|++|+.||+|++||+.+++.        ..+    .+|...|.+++|+|+|  ++++ +.+..++.|
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas-s~D~tVrlW  207 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA-LSNNSVFSM  207 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE-ETTCCEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE-eCCCeEEEE
Confidence            599999999999999999999999999998853        333    5678899999999999  5544 345666666


Q ss_pred             EeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                      ++....          .....+++ .+|. .|.+++|+  |++||+++ +      ++|++||+.+++..     ....+
T Consensus       208 d~~~~~----------~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~------~tIkLWd~~~~~~~-----~~~~g  263 (588)
T 2j04_A          208 TVSASS----------HQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P------GYVHKIDLKNYSIS-----SLKTG  263 (588)
T ss_dssp             CCCSSS----------SCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S------SEEEEEETTTTEEE-----EEECS
T ss_pred             ECCCCc----------cccceeeecccccCcEEEEEEE--CCEEEEEe-C------CeEEEEECCCCeEE-----EEEcC
Confidence            653210          00112345 3666 89999999  68999886 5      89999999987663     12228


Q ss_pred             CCCCCcceee--eeCCCCCCCceEEEEeccceeeeeee
Q 013347          401 PGDNPKPVAF--SFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       401 ~~~~i~~v~~--spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      |.+.+++++|  +||++.     ++++.++|. .+|.+
T Consensus       264 h~~~V~~va~~~s~d~~~-----La~a~edG~-klw~~  295 (588)
T 2j04_A          264 SLENFHIIPLNHEKESTI-----LLMSNKTSY-KVLLE  295 (588)
T ss_dssp             CCSCCCEEEETTCSSCEE-----EEECSSCEE-EEEES
T ss_pred             CCceEEEEEeeeCCCCCE-----EEEEcCCCC-EEEee
Confidence            9999999999  999865     889999999 66654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.3e-31  Score=244.78  Aligned_cols=254  Identities=19%  Similarity=0.279  Sum_probs=202.7

Q ss_pred             ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       139 ~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..+|.+.|++++|+|++..|++++.||.|++|++.....                     .+.....+.+|. ..|.+++
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~~~~~-~~v~~~~   64 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS---------------------NWELSDSWRAHD-SSIVAID   64 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC---------------------CEEEEEEEECCS-SCEEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC---------------------cceecceeccCC-CcEEEEE
Confidence            369999999999999988899999999999999984322                     223555677885 8999999


Q ss_pred             Ecc--CCCeEEEEeeCCCeEEEEEcCCCC----------ceeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCC
Q 013347          219 WGP--DGRYLASASYESSSFTIWDVAQGL----------GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNT  284 (444)
Q Consensus       219 ~sp--~~~~l~~~~~d~~~i~iwd~~~~~----------~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~  284 (444)
                      |+|  ++++|++++.|+ .|++||+++++          ...+..|...|.+++|+|+  +++|++++.|+.|++||+++
T Consensus        65 ~~~~~d~~~l~s~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           65 WASPEYGRIIASASYDK-TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             ECCGGGCSEEEEEETTS-CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             EcCCCCCCEEEEEcCCC-eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence            999  699999999998 99999998863          2234567899999999999  99999999999999999988


Q ss_pred             Cceec-c-------------ccCCCceeEEEECCC---CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          285 WTSEP-W-------------SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       285 ~~~~~-~-------------~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      ++... +             ..+...+.+++|+|+   +..+++++.+ +.+..+....           .....+..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~~~~~-----------~~~~~~~~~~  211 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-QAIIYQRGKD-----------GKLHVAAKLP  211 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-EEEEEEECTT-----------SCEEEEEECC
T ss_pred             hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC-CcEEEEccCC-----------CceeeeeecC
Confidence            76421 1             157788999999997   8888877554 3332222110           0223356677


Q ss_pred             cCC-ceeEEEECCCC----CEEEEEecCCCccccceEEEEEcCCCCe---------------------------------
Q 013347          348 GSQ-GIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPL---------------------------------  389 (444)
Q Consensus       348 ~~~-~v~~~~~spdg----~~l~~~~~d~~~~~d~~i~vwd~~~~~~---------------------------------  389 (444)
                      +|. .|.+++|+|++    ++|++++.|      +.|++||+..+..                                 
T Consensus       212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (351)
T 3f3f_A          212 GHKSLIRSISWAPSIGRWYQLIATGCKD------GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE  285 (351)
T ss_dssp             CCCSCEEEEEECCCSSCSSEEEEEEETT------SCEEEEEEEECC----------------------------------
T ss_pred             CCCcceeEEEECCCCCCcceEEEEEcCC------CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccc
Confidence            787 99999999998    899999998      9999999986421                                 


Q ss_pred             --------EEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          390 --------ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       390 --------~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                              .....+..+.+|...|++++|+|+|++     |+.+..||.|++|++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          286 EKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI-----LSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             -----CCSEEEEEEEEECTTSSCEEEEEECSSSCC-----EEEEETTSCEEEEEECT
T ss_pred             eeeeecccccccEEEEEecccccEEEEEEcCCCCE-----EEEecCCCcEEEEecCc
Confidence                    123456678899999999999999886     78888999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-31  Score=244.58  Aligned_cols=255  Identities=16%  Similarity=0.183  Sum_probs=201.7

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSY  174 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~  174 (444)
                      ..|++++|+|++++|++++.||.|++||+.+ ++....+  .+...|.+++|+|++..+++++.+     +.|++|++..
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSN-GQCVATW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEe--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            3599999999999999999999999999987 4544444  388899999999999889888888     9999999985


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccC-CCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCcee-eec
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTP-IRR  251 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~-~~~  251 (444)
                      ......+.....              .....+..|. ...+.+++|+|++++|++++.|+ .|++||+++ .+... +..
T Consensus       152 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          152 DSATHELTKVSE--------------EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             CTTTCCEEEECS--------------SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTTTEEEEEEEC
T ss_pred             Cccceeeccccc--------------ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCCcEeEEEEec
Confidence            544333222100              0112233342 12899999999999999999998 999999998 44443 556


Q ss_pred             CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEE----------E
Q 013347          252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG----------S  321 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~----------~  321 (444)
                      |...|.+++|+|++++|++++.|+.|++||+++++......+...+.+++|+|+++++++++..+....          .
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  296 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE  296 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred             CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence            889999999999999999999999999999999888665568889999999999999998866542110          2


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      +.+|+..          ....+..+.+|. .|.+++|+|++++|++++.|      |.|++|+++.+.
T Consensus       297 i~~~d~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~~  348 (369)
T 3zwl_B          297 ARFYHKI----------FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED------GFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEETT----------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT------SEEEEEEECHHH
T ss_pred             eEEEecC----------CCcchhheecccCcEEEEEECCCCCEEEEEcCC------CeEEEEECcccc
Confidence            3333321          345566777887 99999999999999999998      999999998643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.3e-31  Score=281.77  Aligned_cols=293  Identities=14%  Similarity=0.136  Sum_probs=227.3

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ...|++++|+|+|++||+++.|+.|+|||+.+ ++....+ .+|...|.+++|+|+  +..+++++.|+.|++||+....
T Consensus       657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  734 (1249)
T 3sfz_A          657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE  734 (1249)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-CceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence            34799999999999999999999999999997 5555555 589999999999995  3356677789999999998332


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--------
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--------  248 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--------  248 (444)
                                               +...+.+|. ..|.+++|+|++++|++++.|+ .|++||+.+++...        
T Consensus       735 -------------------------~~~~~~~h~-~~v~~~~~sp~~~~l~s~s~dg-~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          735 -------------------------CRNTMFGHT-NSVNHCRFSPDDELLASCSADG-TLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             -------------------------EEEEECCCS-SCEEEEEECSSTTEEEEEESSS-EEEEEEGGGTEEEEEEECCCCC
T ss_pred             -------------------------hhheecCCC-CCEEEEEEecCCCEEEEEECCC-eEEEEeCCCCcccceecccccc
Confidence                                     344566775 7899999999999999999998 99999987653211        


Q ss_pred             ------------------------------------------------eecCCCCeEEEEEecCCCeEEEEecCCcEEEE
Q 013347          249 ------------------------------------------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW  280 (444)
Q Consensus       249 ------------------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iw  280 (444)
                                                                      ...|...+.+++|+|+++++++++.|+.|++|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw  867 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW  867 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                                                            11456788999999999999999999999999


Q ss_pred             ECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC------------------------c
Q 013347          281 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH------------------------L  335 (444)
Q Consensus       281 d~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~  335 (444)
                      |+.+++. ..+.+|...|++++|+|+++++++++ .++.+..|++..........                        +
T Consensus       868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            9999877 55678999999999999999998765 45777777754311000000                        0


Q ss_pred             CCCCccccc-ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          336 LPVDLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       336 ~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                      ......... .......+.+++|+|+++++++++.+      |.|++|++.+++..     ..+.+|...|++++|+|+|
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~------g~i~i~d~~~~~~~-----~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED------GAIKIIELPNNRVF-----SSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT------SCCEEEETTTTSCE-----EECCCCSSCCCCEEECSSS
T ss_pred             EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC------CCEEEEEcCCCcee-----eecccCCCceEEEEECCCC
Confidence            000000000 01111278999999999999999998      99999999988765     4567899999999999999


Q ss_pred             CCCCCceEEEEeccceeeeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ++     ++.+..+|.|.+|++.
T Consensus      1016 ~~-----l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A         1016 KT-----LISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             SC-----EEEECSSSBEEEEETT
T ss_pred             CE-----EEEEcCCCEEEEEECC
Confidence            86     7778888999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-30  Score=249.60  Aligned_cols=298  Identities=15%  Similarity=0.156  Sum_probs=220.9

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ...|++++|+|++ +|++|+.||+|++||+.+ ++....+ .+|...|.+++|++  ++..+++++.|+.|++||+....
T Consensus       162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~  238 (464)
T 3v7d_B          162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK-GCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  238 (464)
T ss_dssp             SSCEEEEEECSTT-EEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred             CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC-CcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence            3469999999998 899999999999999987 4444444 58999999999995  65678888889999999998554


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  255 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~  255 (444)
                      .........  ........+.....+...+.+|. ..+.++  +++++++++++.|+ .|++||+.+++... +..|...
T Consensus       239 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~  312 (464)
T 3v7d_B          239 SVPDHGEEH--DYPLVFHTPEENPYFVGVLRGHM-ASVRTV--SGHGNIVVSGSYDN-TLIVWDVAQMKCLYILSGHTDR  312 (464)
T ss_dssp             CC------C--CSSEEESCGGGCTTEEEEECCCS-SCEEEE--EEETTEEEEEETTS-CEEEEETTTTEEEEEECCCSSC
T ss_pred             ccccccccC--CcceEeeccCCCeEEEEEccCcc-ceEEEE--cCCCCEEEEEeCCC-eEEEEECCCCcEEEEecCCCCC
Confidence            332221110  00001111112222456677775 677776  67899999999998 99999999887665 4568899


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      |.+++|+|+++++++++.|+.|++||+++++. ..+.+|...|.+++|+  ++++++++ .++.+..|++..        
T Consensus       313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~--------  381 (464)
T 3v7d_B          313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDAND--------  381 (464)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTT--------
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCC--------
Confidence            99999999999999999999999999999887 5677899999999997  46777654 456677776532        


Q ss_pred             cCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          335 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                           ............+..++|+|++++|++++ +      +.|++||+++++.+.    ..+.+|...|.+++|+  +
T Consensus       382 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d------g~i~iwd~~~g~~~~----~~~~~~~~~v~~v~~~--~  443 (464)
T 3v7d_B          382 -----YSRKFSYHHTNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLVH----ANILKDADQIWSVNFK--G  443 (464)
T ss_dssp             -----CCEEEEEECTTCCCEEEEEECSSEEEEEE-T------TEEEEEETTTCCEEE----SCTTTTCSEEEEEEEE--T
T ss_pred             -----CceeeeecCCCCccEEEEEeCCCEEEEec-C------CeEEEEECCCCcEEe----hhhccCCCcEEEEEec--C
Confidence                 11222222222678889999999999988 6      899999999988761    2355788889999997  3


Q ss_pred             CCCCCceEEEEeccceeeeeeeee
Q 013347          415 KFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       415 ~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +.    +++.+.++|.+.++-+.+
T Consensus       444 ~~----l~~~~~~~g~~~i~~ldf  463 (464)
T 3v7d_B          444 KT----LVAAVEKDGQSFLEILDF  463 (464)
T ss_dssp             TE----EEEEEEETTEEEEEEEEC
T ss_pred             CE----EEEEEEeCCeEEEEEeec
Confidence            32    466666777777665543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=246.13  Aligned_cols=259  Identities=10%  Similarity=0.145  Sum_probs=199.4

Q ss_pred             ceEEEEEecC---CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE------eeCCCeEEEEecCCcEEEEe
Q 013347          101 DLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW------RPNGGRSLSVGCKGGICIWA  171 (444)
Q Consensus       101 ~v~~~~~sp~---g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~------s~~~~~ll~~~~dg~v~iw~  171 (444)
                      .|++++|+|+   +++|++++.||.|++|++.+.......+ .+|...|.++.|      +|++..+++++.|+.|++||
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            5999999999   7999999999999999999743244444 589999999965      67888899999999999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE----EccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS----WGPDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~sp~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      +.........                     .....++....+.+++    |+|++++|++++.|+ .|++||+++++..
T Consensus       146 ~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~  203 (357)
T 3i2n_A          146 PRQKDDPVAN---------------------MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG-DIKLFDLRNMALR  203 (357)
T ss_dssp             TTSCSSCSEE---------------------ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS-EEEEEETTTTEEE
T ss_pred             CCCCCCccee---------------------ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC-eEEEEECccCcee
Confidence            9855422111                     1112233235788888    789999999999998 9999999999887


Q ss_pred             eeecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCcee-cc-----ccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          248 PIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSE-PW-----SSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~~-~~-----~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      ....+...+.+++|+|   ++++|++++.|+.|++||+++++.. .+     ..|...|++++|+|+++.++++++.++.
T Consensus       204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            7888899999999999   9999999999999999999876652 22     2899999999999999944444556678


Q ss_pred             EEEEEeecCCCCcC----CCcCC--CCcccccccccCC-ceeEEEECCCCCEEE-EEecCCCccccceEEEEEcCCCC
Q 013347          319 LGSIHFASKPPSLD----AHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       319 ~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      +..|++........    +....  .....+..+.+|. .|.+++|+|+|++|+ +++.|      +.|++||+.+.+
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d------~~i~iw~~~~~~  355 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD------QTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECC--
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC------CcEEEEECCCcc
Confidence            88888764321110    00000  0123566777888 999999999999998 78888      999999998643

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-32  Score=255.88  Aligned_cols=256  Identities=9%  Similarity=0.093  Sum_probs=192.0

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      .+.++|++++|+|+++.+++++.|+.|++|++...                       .+.....+.+|. ..|.+++|+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~s   64 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-----------------------GWKHARTFSDHD-KIVTCVDWA   64 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-----------------------EEEECCCBCCCS-SCEEEEEEC
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-----------------------ceEEEEEEecCC-ceEEEEEEe
Confidence            46778999999999888888888999999999732                       223444567775 899999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCC----ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc----eecccc
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGL----GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT----SEPWSS  292 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~----~~~~~~  292 (444)
                      |++++|++++.|+ .|++||+.+++    ...+..|...|.+++|+|++++|++++.|+.|++||+++++    ...+..
T Consensus        65 ~~~~~l~s~s~d~-~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (377)
T 3dwl_C           65 PKSNRIVTCSQDR-NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR  143 (377)
T ss_dssp             TTTCCEEEEETTS-SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred             CCCCEEEEEeCCC-eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence            9999999999998 99999999876    33456788999999999999999999999999999999886    244555


Q ss_pred             -CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc--CCCcCC---CCcccccccccCC-ceeEEEECCCCCEEE
Q 013347          293 -TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL--DAHLLP---VDLPDIVSLTGSQ-GIEKIAWDASGERLA  365 (444)
Q Consensus       293 -~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~-~v~~~~~spdg~~l~  365 (444)
                       |...|++++|+|++++|++++. ++.+..|++.......  ....+.   .....+..+ +|. .|.+++|+|+|++|+
T Consensus       144 ~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          144 PLRSTILSLDWHPNNVLLAAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA  221 (377)
T ss_dssp             SCCSCEEEEEECTTSSEEEEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred             ccCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence             9999999999999999987654 4677888774321100  000010   013345555 676 899999999999999


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +++.|      +.|++||+.+++.. ...+..+.+|...|.+++|+|||++     |+.+.+++.+ +|..
T Consensus       222 ~~~~d------~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          222 YAGHD------SSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWANESAI-----VAAGYNYSPI-LLQG  279 (377)
T ss_dssp             EEETT------TEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEEETTEE-----EEEESSSSEE-EECC
T ss_pred             EEeCC------CcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEcCCCCE-----EEEEcCCcEE-EEEe
Confidence            99998      99999999988762 2224678899999999999999875     7777666665 5544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-30  Score=259.58  Aligned_cols=285  Identities=14%  Similarity=0.205  Sum_probs=224.3

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC----CceeEEecCCCCC-eEEEEEee--CCCeEEEEecCCcEEEEe
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG----KDACILTSDSQRD-VKVLEWRP--NGGRSLSVGCKGGICIWA  171 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~----~~~~~~~~~~~~~-v~~l~~s~--~~~~ll~~~~dg~v~iw~  171 (444)
                      ...|.+++|+|+|++||+++ ++.|+||++.+ +    .....+ .+|... |++++|+|  +++.+++++.||.|++|+
T Consensus        18 ~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~-~~~~~~~~~~~-~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDD-GDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE-TTEEEEEECCS-SCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             cCceeEEEECCCCCEEEEec-CCeEEEEECCC-CCCccccceEE-ecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            34599999999999999988 88999999996 4    444444 589999 99999999  988899999999999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----CCeEEEEEcCCCCce
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----SSSFTIWDVAQGLGT  247 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~~i~iwd~~~~~~~  247 (444)
                      +.........                 .......+..|. ..|.+++|+|++++|++++.+    + .|++||.. ....
T Consensus        95 ~~~~~~~~~~-----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~-~v~~~d~~-~~~~  154 (615)
T 1pgu_A           95 WTFDKESNSV-----------------EVNVKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDNFG-VFISWDSG-NSLG  154 (615)
T ss_dssp             EEEEGGGTEE-----------------EEEEEEEEECCS-SCEEEEEECTTSSEEEEEECCSSCSE-EEEETTTC-CEEE
T ss_pred             CCCCcccccc-----------------cccccchhhccc-ccEEEEEEeCCCCEEEEeccCCCCcc-EEEEEECC-Ccce
Confidence            9622111100                 113455677775 899999999999999999987    5 89999832 2233


Q ss_pred             eeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCce-eccccCCC---ceeEEEECCC-CCEEEEEEcCCceEEE
Q 013347          248 PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSG---FVTGATWDPE-GRMILLAFAGSLTLGS  321 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~---~v~~~~~sp~-g~~l~~~~~~~~~~~~  321 (444)
                      .+..|...|.+++|+|+++ .+++++.|+.|++||+.+++. ..+..|..   .|.+++|+|+ ++++++++. ++.+..
T Consensus       155 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~v  233 (615)
T 1pgu_A          155 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISC  233 (615)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEE
T ss_pred             eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEE
Confidence            4667889999999999998 789999999999999998877 45667888   9999999999 999887654 466777


Q ss_pred             EEeecCCCCcCCCcCCCCccccccc-c---cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSL-T---GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  396 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~  396 (444)
                      |++.             ....+..+ .   .|. .|.+++|+ ++++|++++.|      +.|++||+.+++..     .
T Consensus       234 wd~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~-----~  288 (615)
T 1pgu_A          234 FDGK-------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD------ATIRVWDVTTSKCV-----Q  288 (615)
T ss_dssp             EETT-------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT------SEEEEEETTTTEEE-----E
T ss_pred             EECC-------------CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC------CcEEEEECCCCcEE-----E
Confidence            6653             23445555 4   666 89999999 99999999998      99999999987665     3


Q ss_pred             eeeCC----CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          397 FIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       397 ~~~~~----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      .+..+    ...+.++.|+ +++     .++++..+|.|.+|++..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~-~~~-----~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          289 KWTLDKQQLGNQQVGVVAT-GNG-----RIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             EEECCTTCGGGCEEEEEEE-ETT-----EEEEEETTSCEEEEETTE
T ss_pred             EEcCCCCcccCceeEEEeC-CCC-----eEEEEECCCCEEEEECCC
Confidence            44444    3456677775 555     478888999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.8e-31  Score=244.81  Aligned_cols=256  Identities=13%  Similarity=0.172  Sum_probs=206.3

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..|..+|++++|+|+++.+++++.|+.|++|++...                       .+.....+.+|. ..|.+++|
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-----------------------~~~~~~~~~~h~-~~v~~~~~   60 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-----------------------KWVQVHELKEHN-GQVTGVDW   60 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-----------------------EEEEEEEEECCS-SCEEEEEE
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-----------------------cEEeeeeecCCC-CcccEEEE
Confidence            368899999999999888888889999999998722                       223566677785 89999999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce----e-ccc
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----E-PWS  291 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~----~-~~~  291 (444)
                      +|++++|++++.|+ .|++||+.+++...   ...|...|.+++|+|++++|++++.|+.|++||++.++.    . ...
T Consensus        61 ~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~  139 (372)
T 1k8k_C           61 APDSNRIVTCGTDR-NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK  139 (372)
T ss_dssp             ETTTTEEEEEETTS-CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred             eCCCCEEEEEcCCC-eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence            99999999999998 99999998886433   355788999999999999999999999999999988762    2 235


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC--CCcC---CCCcccccccccCC-ceeEEEECCCCCEEE
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD--AHLL---PVDLPDIVSLTGSQ-GIEKIAWDASGERLA  365 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~-~v~~~~~spdg~~l~  365 (444)
                      .|...+.+++|+|+++++++++. ++.+..|++........  ...+   ......+..+.+|. .|.+++|+|++++|+
T Consensus       140 ~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          140 PIRSTVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             ccCCCeeEEEEcCCCCEEEEEcC-CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            78899999999999999887654 46777777542210000  0000   01234566676777 899999999999999


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +++.|      +.|++||+++++.+     ..+.+|...|.+++|+|++++     ++++ .+|.|.+|++.-
T Consensus       219 ~~~~d------~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-----l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          219 WVSHD------STVCLADADKKMAV-----ATLASETLPLLAVTFITESSL-----VAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEETT------TEEEEEEGGGTTEE-----EEEECSSCCEEEEEEEETTEE-----EEEE-TTSSCEEEEEET
T ss_pred             EEeCC------CEEEEEECCCCcee-----EEEccCCCCeEEEEEecCCCE-----EEEE-eCCeEEEEEccC
Confidence            99988      99999999987765     567788889999999999875     7777 899999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-31  Score=256.21  Aligned_cols=254  Identities=13%  Similarity=0.141  Sum_probs=188.7

Q ss_pred             cceEEEEEecC------CCeEEEEECCCeEEEEEccCCCCc---------eeEEecCCCCCeEEEEEeeCCCeEEEEecC
Q 013347          100 VDLQGVSWHQH------KHIVAFISGSTQVIVRDYEDSGKD---------ACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (444)
Q Consensus       100 ~~v~~~~~sp~------g~~la~~~~dg~v~iw~~~~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d  164 (444)
                      ..|++++|+|+      +.+||+++.||+|+||++......         ......+|...|++++|+++ +.|++++.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence            46999999997      579999999999999999863211         11123589999999999987 688889999


Q ss_pred             CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE--EEccCC-CeEEEEeeCCCeEEEEEc
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDG-RYLASASYESSSFTIWDV  241 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~-~~l~~~~~d~~~i~iwd~  241 (444)
                      |+|++||++....+                        ...+.+|. ..|.++  +|+|++ ++|++++.|+ +|+|||+
T Consensus       287 gtV~lWD~~~~~~~------------------------~~~~~~H~-~~V~sv~~~~s~~g~~~laS~S~D~-tvklWD~  340 (524)
T 2j04_B          287 GFVAEFDLTDPEVP------------------------SFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVDG-YFYIFNP  340 (524)
T ss_dssp             SEEEEEETTBCSSC------------------------SEEEECSS-SCEEEEEEECCTTSCCEEEEEETTS-EEEEECG
T ss_pred             CEEEEEECCCCCCc------------------------eEEeeccc-ccEEEEEEEcCCCCCeEEEEeccCC-eEEEEEC
Confidence            99999999843221                        12356675 899999  578888 8999999998 9999999


Q ss_pred             CCCCcee-eecCC--CCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          242 AQGLGTP-IRRGF--GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       242 ~~~~~~~-~~~~~--~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      ++++... +..|.  ..|.+++|+|+++.+++++.|++|++||++++.. ..+.+|...|++++|+|+|++|++++ .++
T Consensus       341 ~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dg  419 (524)
T 2j04_B          341 KDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADG  419 (524)
T ss_dssp             GGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTT
T ss_pred             CCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCC
Confidence            9876543 33443  3588999999999999999999999999999876 56778999999999999999988764 446


Q ss_pred             eEEEEEeecCCC--------------------CcCCC---------cCC--CCcccccccccCC-ceeEEEECCCCC---
Q 013347          318 TLGSIHFASKPP--------------------SLDAH---------LLP--VDLPDIVSLTGSQ-GIEKIAWDASGE---  362 (444)
Q Consensus       318 ~~~~~~~~~~~~--------------------~~~~~---------~~~--~~~~~~~~~~~~~-~v~~~~~spdg~---  362 (444)
                      ++..|++.....                    ..++.         ++.  .++..+.++.+|. .|.+++|+|+++   
T Consensus       420 tv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~  499 (524)
T 2j04_B          420 SLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGK  499 (524)
T ss_dssp             EEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTT
T ss_pred             EEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccH
Confidence            666554322100                    00000         010  1134456677887 999999999964   


Q ss_pred             EEEEEecCCCccccceEEEEEcCCC
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      +||+|+.+      |.|+||++...
T Consensus       500 ~lAsg~~~------g~vrlw~l~~~  518 (524)
T 2j04_B          500 CYAFSNSA------GLLTLEYLSLE  518 (524)
T ss_dssp             EEEEECTT------SEEEEEECSCC
T ss_pred             HHHhhccC------ceEEEEEcccc
Confidence            99999988      99999999853

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.7e-30  Score=245.93  Aligned_cols=238  Identities=17%  Similarity=0.310  Sum_probs=197.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+|++||+|+.||.|+|||+.+ ++....+ .+|...+.+++|++  ..+++++.|+.+++|+......   
T Consensus       149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-~~~~~~~-~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~---  221 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNM-TSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEH---  221 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSC---
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEcCC-CcEEEEE-eCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccce---
Confidence            599999999999999999999999999997 5554444 58999999988754  5788888899999999873322   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc-----eeeecCCCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG-----TPIRRGFGG  255 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~-----~~~~~~~~~  255 (444)
                                           ....+.+|. ..+..+.|+|+++++++++.|+ .+++|+..+++.     .....+...
T Consensus       222 ---------------------~~~~~~~h~-~~~~~~~~~~~g~~l~s~~~D~-~v~i~~~~~~~~~~~~~~~~~~~~~~  278 (420)
T 4gga_A          222 ---------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGNDN-LVNVWPSAPGEGGWVPLQTFTQHQGA  278 (420)
T ss_dssp             ---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred             ---------------------eeEEecccc-cceeeeeecCCCCeeeeeeccc-cceEEeeccccccceeeeeecccCCc
Confidence                                 344567775 8999999999999999999998 999999987753     234567889


Q ss_pred             eEEEEEecCCCe-EEE--EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCCCCc
Q 013347          256 LSILKWSPTGDY-FFA--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSL  331 (444)
Q Consensus       256 v~~~~~sp~~~~-l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~~~~  331 (444)
                      |.+++|+|++.. +++  |+.|++|++||+.+++......+...+.++.|+|+++.++++++ .++.+.+|++.      
T Consensus       279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~------  352 (420)
T 4gga_A          279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP------  352 (420)
T ss_dssp             EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT------
T ss_pred             eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECC------
Confidence            999999997654 444  45799999999999988666666778999999999999887653 56677777653      


Q ss_pred             CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                             +...+.++.+|. .|++++|+|||++|++++.|      ++|+|||+...
T Consensus       353 -------~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D------~tvriWdv~~~  396 (420)
T 4gga_A          353 -------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFEL  396 (420)
T ss_dssp             -------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSCS
T ss_pred             -------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCCC
Confidence                   456678889999 99999999999999999998      99999998754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-30  Score=247.83  Aligned_cols=259  Identities=15%  Similarity=0.279  Sum_probs=197.4

Q ss_pred             ceEEEEEecC-CCeEEEEECCCeEEEEEccCC---------CCceeEEecCCCCCeEEEEEeeCCC-eEEEEecCCcEEE
Q 013347          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS---------GKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICI  169 (444)
Q Consensus       101 ~v~~~~~sp~-g~~la~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~i  169 (444)
                      .|++++|+|+ +.+||+++.+|.|+||++...         ......+ .+|...|++++|+|++. .|++++.||.|++
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  208 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICL  208 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEE
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEE
Confidence            4999999997 789999999999999999862         2233333 58999999999999987 7777888999999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCC---
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGL---  245 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~---  245 (444)
                      |++..........                  .....+.+|. ..|.+++|+| ++.+|++++.|+ .|++||++++.   
T Consensus       209 wd~~~~~~~~~~~------------------~~~~~~~~h~-~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~~~  268 (430)
T 2xyi_A          209 WDINATPKEHRVI------------------DAKNIFTGHT-AVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSK  268 (430)
T ss_dssp             EETTSCCBGGGEE------------------ECSEEECCCS-SCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCSSS
T ss_pred             EeCCCCCCCCcee------------------ccceeecCCC-CCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCCCc
Confidence            9998533221111                  1123455664 7899999999 778888999998 99999999762   


Q ss_pred             ce-eeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          246 GT-PIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       246 ~~-~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      .. .+..|...|.+++|+|+++ +|++|+.||.|++||+++...  ..+..|...|.+++|+|+++.++++++.++.+..
T Consensus       269 ~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          269 PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            33 3557889999999999987 578999999999999998432  5566899999999999999765555566678888


Q ss_pred             EEeecCCCCcCC-CcCCCCcccccccccCC-ceeEEEECCCCC-EEEEEecCCCccccceEEEEEcCC
Q 013347          322 IHFASKPPSLDA-HLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       322 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      |++......... .........+..+.+|. .|.+++|+|+++ +|++++.|      |.|+||++..
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d------g~i~iw~~~~  410 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED------NIMQVWQMAE  410 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT------SEEEEEEECH
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC------CCEEEeEccc
Confidence            887542110000 00000123455666777 899999999999 89999888      9999999975

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-30  Score=246.02  Aligned_cols=283  Identities=12%  Similarity=0.038  Sum_probs=209.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCC---ceeEEe-------------------------------------
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---DACILT-------------------------------------  139 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~---~~~~~~-------------------------------------  139 (444)
                      +++.+++|+|+|++|+++ .++.|++||+.+ ++   ......                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQS-PNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEET-TTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCC-CCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            468999999999966655 688999999987 44   221111                                     


Q ss_pred             ----------------cCCCCCeEEEEEeeCCCeE-EEEecCCcEEEEecC--CCCCcceeeccccccccccccCCCCce
Q 013347          140 ----------------SDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPS--YPGNAASVRSGAASFLGALSRGPGTRW  200 (444)
Q Consensus       140 ----------------~~~~~~v~~l~~s~~~~~l-l~~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (444)
                                      .+|.+.|++++|+|+++.| ++++.|+.|++|++.  .......+.                  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------  144 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------  144 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------
Confidence                            1344579999999998886 556678999999997  333222111                  


Q ss_pred             EEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-----eeecCCCCeEEEEEecC---CCeEEEEe
Q 013347          201 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGGLSILKWSPT---GDYFFAAK  272 (444)
Q Consensus       201 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~---~~~l~~~~  272 (444)
                           ...| ...|.+++|+|++++|++++.++ .|++|++.++...     .+..|...|.+++|+|+   +++|++++
T Consensus       145 -----~~~~-~~~v~~~~~sp~~~~l~~~~~~g-~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  217 (450)
T 2vdu_B          145 -----RFCF-SKRPNAISIAEDDTTVIIADKFG-DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD  217 (450)
T ss_dssp             -----EEEC-SSCEEEEEECTTSSEEEEEETTS-EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             -----cccC-CCCceEEEEcCCCCEEEEEeCCC-cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence                 1133 37899999999999999999998 9999999887654     45678899999999999   99999999


Q ss_pred             cCCcEEEEECCCCcee-c-cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc---
Q 013347          273 FDGTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT---  347 (444)
Q Consensus       273 ~d~~v~iwd~~~~~~~-~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  347 (444)
                      .|+.|++||+++++.. . +.+|...|++++|+ ++++|++++ .++.+..|++...             ..+..+.   
T Consensus       218 ~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~-------------~~~~~~~~~~  282 (450)
T 2vdu_B          218 RDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTG-------------KNLSTFDYNS  282 (450)
T ss_dssp             TTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTC-------------CEEEEEECHH
T ss_pred             CCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCC-------------cEeeeecchh
Confidence            9999999999988763 3 55899999999999 999999775 4567777765432             1111111   


Q ss_pred             ----------------------cCC-ceeEEEECCCCCEEEEEe-cCCCccccceEEEEEc--CCCCeEEEEEeeeeeCC
Q 013347          348 ----------------------GSQ-GIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGP  401 (444)
Q Consensus       348 ----------------------~~~-~v~~~~~spdg~~l~~~~-~d~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~  401 (444)
                                            ... .|.+++|+|++++|++++ .+      +.|++|++  ..+..  ......+.+|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d------~~i~iw~~~~~~~~~--l~~~~~~~~~  354 (450)
T 2vdu_B          283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT------KCIIILEMSEKQKGD--LALKQIITFP  354 (450)
T ss_dssp             HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC------SEEEEEEECSSSTTC--EEEEEEEECS
T ss_pred             hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC------CeEEEEEeccCCCCc--eeeccEeccC
Confidence                                  112 789999999999999998 55      99999999  44322  2334567777


Q ss_pred             CCCCcceeeeeCCCCCCCceEEEEec------cceeeeeeeee
Q 013347          402 GDNPKPVAFSFHDKFKQGPLLSVCWS------SGFCCTYPLIF  438 (444)
Q Consensus       402 ~~~i~~v~~spdg~~~~~~~l~~~~~------~g~i~~~~~~~  438 (444)
                       ..|.+++|+|++.     +++++..      +..|.+|.+..
T Consensus       355 -~~v~~~~~~~~~~-----~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          355 -YNVISLSAHNDEF-----QVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             -SCEEEEEEETTEE-----EEEECCTTCCSSCCCSEEEEEEET
T ss_pred             -CceEEEEecCCcE-----EEEEecccCCCCCCcceEEEEEEc
Confidence             7899999999642     2444332      34467776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.3e-30  Score=267.60  Aligned_cols=274  Identities=16%  Similarity=0.216  Sum_probs=200.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|++++|++++.||.|+||++.+ ++....+ .+|.+.|++++|+|++..+++++.||.|++|++........
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence            499999999999999999999999999987 5554544 58999999999999988999999999999999986533333


Q ss_pred             eeccccccccccccCC-----------CCceEEE--------EEeeccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEE
Q 013347          181 VRSGAASFLGALSRGP-----------GTRWTLV--------DFLRSQNGEQITALSWGP--DGRYLASASYESSSFTIW  239 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iw  239 (444)
                      ...+....+..+.+.+           ++...++        ..+..++...+.+++|+|  ++++|++++.|+ .|++|
T Consensus       135 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~~~  213 (814)
T 3mkq_A          135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-TIKIW  213 (814)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS-EEEEE
T ss_pred             EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC-EEEEE
Confidence            3333223333333322           2222222        123344447899999999  999999999998 99999


Q ss_pred             EcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCE--EEEEEcC
Q 013347          240 DVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRM--ILLAFAG  315 (444)
Q Consensus       240 d~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~--l~~~~~~  315 (444)
                      |+.+++... +..|...|.+++|+|++++|++++.||.|++||+.+++. ..+..+...+.+++|+|++..  ++++.. 
T Consensus       214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-  292 (814)
T 3mkq_A          214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-  292 (814)
T ss_dssp             ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEET-
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeC-
Confidence            999887665 556889999999999999999999999999999999877 456678889999999999974  444433 


Q ss_pred             CceEEEEEeecCCCCcC----CC---------------------cCCC-C----cccccccccCC-ceeEEEECCCCCEE
Q 013347          316 SLTLGSIHFASKPPSLD----AH---------------------LLPV-D----LPDIVSLTGSQ-GIEKIAWDASGERL  364 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~----~~---------------------~~~~-~----~~~~~~~~~~~-~v~~~~~spdg~~l  364 (444)
                       ..+..|++....+...    +.                     .+.. .    ......+..+. .+.+++|+|+|++|
T Consensus       293 -~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  371 (814)
T 3mkq_A          293 -NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV  371 (814)
T ss_dssp             -TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred             -CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence             4455555433211100    00                     0000 0    00111223333 68999999999999


Q ss_pred             EEEecCCCccccceEEEEEcCC
Q 013347          365 AVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      ++++ +      +.+.+|++..
T Consensus       372 a~~~-~------~~~~i~~~~~  386 (814)
T 3mkq_A          372 TVVG-D------GEYVIYTALA  386 (814)
T ss_dssp             EEEE-T------TEEEEEETTT
T ss_pred             EEec-C------CEEEEEECcc
Confidence            9988 5      8999999764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-31  Score=267.33  Aligned_cols=245  Identities=15%  Similarity=0.248  Sum_probs=198.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      |++++|+|++++|++|+.||.|+||++............+|.+.|++++|+|+  +..+++++.||.|++||+...    
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----   87 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----   87 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----
Confidence            99999999999999999999999999985322223333689999999999988  888999999999999998732    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--CCeEEEEeeCCCeEEEEEcCCCC---ceeeecCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--GRYLASASYESSSFTIWDVAQGL---GTPIRRGFG  254 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~~i~iwd~~~~~---~~~~~~~~~  254 (444)
                                         .+.....+.+|. ..|.+++|+|+  ++.+++++.|| .|++||++++.   ......|..
T Consensus        88 -------------------~~~~~~~~~~h~-~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           88 -------------------RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             -------------------EEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTS-EEEEEECCSSSCCCCEEEECCSS
T ss_pred             -------------------cccccccccCCC-CCeEEEEECCCCCCCEEEEEeCCC-cEEEEEeecCCCcceeEeecCCC
Confidence                               233455667775 89999999999  99999999998 99999998873   334567889


Q ss_pred             CeEEEEEec-------------CCCeEEEEecCCcEEEEECCCCce-----eccccCCCceeEEEECCC---CCEEEEEE
Q 013347          255 GLSILKWSP-------------TGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILLAF  313 (444)
Q Consensus       255 ~v~~~~~sp-------------~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~---g~~l~~~~  313 (444)
                      .|.+++|+|             ++++|++|+.||.|++||++++..     ..+..|...|++++|+|+   ++++++++
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            999999999             589999999999999999987642     345689999999999999   78877664


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                       .++.+..|++......        ....+.....|. .|++++|+|+|++|++++.|      |.|++|++..
T Consensus       227 -~Dg~I~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~D------g~I~vwd~~~  285 (753)
T 3jro_A          227 -QDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD------NKVTLWKENL  285 (753)
T ss_dssp             -SSSCEEEEEESSSSSC--------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSS------SCEECCBCCS
T ss_pred             -cCCEEEEecCCCCCCc--------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCC------CEEEEEecCC
Confidence             4577777776542110        011222333455 89999999999999999988      9999999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-30  Score=245.67  Aligned_cols=273  Identities=14%  Similarity=0.192  Sum_probs=206.3

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|++++|++++.||.|++|+..  +.....+ ..|...|.+++|+|++..+++++.|+.|++||+.......
T Consensus       109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          109 NQVTCLAWSHDGNSIVTGVENGELRLWNKT--GALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             BCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            369999999999999999999999999943  4444444 5899999999999998899999999999999998554433


Q ss_pred             eeecccccc--------------ccccccCCC---------CceE--------EEEEeeccCCCceEEEEEccCCCeEEE
Q 013347          180 SVRSGAASF--------------LGALSRGPG---------TRWT--------LVDFLRSQNGEQITALSWGPDGRYLAS  228 (444)
Q Consensus       180 ~~~~~~~~~--------------~~~~~~~~~---------~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~l~~  228 (444)
                      .+.......              ...+.+.++         +...        ....+..|. ..|.+++|+|++++|++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH-GPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCS-SCEEEEEEETTTTEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCC-CceEEEEECCCCCEEEE
Confidence            332211100              111111111         1111        123455664 78999999999999999


Q ss_pred             EeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCC
Q 013347          229 ASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG  306 (444)
Q Consensus       229 ~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g  306 (444)
                      ++.|+ .|++||+++++... +..|...+.+++|+|++ ++++++.|+.|++||+++++. ..+..|...+.+++|+|++
T Consensus       265 ~~~d~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~  342 (425)
T 1r5m_A          265 ASDDG-TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG  342 (425)
T ss_dssp             EETTS-CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS
T ss_pred             EcCCC-EEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC
Confidence            99998 99999999887665 44588999999999999 999999999999999998887 4466788999999999999


Q ss_pred             CEEEEEEcCCceEEEEEeecCCCCc-------CCCcCCCCcccccccccC--C-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          307 RMILLAFAGSLTLGSIHFASKPPSL-------DAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       307 ~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      ++|++++. ++.+..|++.......       +..........+..+.+|  . .|.+++|+|++++|++++.|      
T Consensus       343 ~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------  415 (425)
T 1r5m_A          343 QKYAVAFM-DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL------  415 (425)
T ss_dssp             SEEEEEET-TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS------
T ss_pred             CEEEEEEC-CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC------
Confidence            99987754 4677888765321000       000000111256677777  5 89999999999999999988      


Q ss_pred             ceEEEEEcC
Q 013347          377 GLIAIYDAR  385 (444)
Q Consensus       377 ~~i~vwd~~  385 (444)
                      |.|++|+++
T Consensus       416 g~i~iw~~~  424 (425)
T 1r5m_A          416 QEGSVVAIP  424 (425)
T ss_dssp             SCCEEEECC
T ss_pred             ceEEEEeec
Confidence            999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=4.3e-30  Score=244.32  Aligned_cols=272  Identities=11%  Similarity=0.160  Sum_probs=215.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.++++  ++++|++|+.||.|++||+.+ ++....+ .+|...|.+++|  +++.+++++.||.|++||+.+..    
T Consensus       135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~~~-~~~~~~~-~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~----  204 (435)
T 1p22_A          135 GVYCLQY--DDQKIVSGLRDNTIKIWDKNT-LECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE----  204 (435)
T ss_dssp             CEEEEEC--CSSEEEEEESSSCEEEEESSS-CCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC----
T ss_pred             cEEEEEE--CCCEEEEEeCCCeEEEEeCCC-CeEEEEE-cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc----
Confidence            5777766  899999999999999999987 5555554 589999999999  66788889999999999998332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCCe
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGGL  256 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~v  256 (444)
                                           ....+.+|. ..|.+++|++  ..+++++.|+ .|++||+.++...    ....|...|
T Consensus       205 ---------------------~~~~~~~h~-~~v~~l~~~~--~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          205 ---------------------MLNTLIHHC-EAVLHLRFNN--GMMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             ---------------------EEEEECCCC-SCEEEEECCT--TEEEEEETTS-CEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             ---------------------EEEEEcCCC-CcEEEEEEcC--CEEEEeeCCC-cEEEEeCCCCCCceeeeEecCCCCcE
Confidence                                 345566775 8999999974  5899999998 9999999987654    345678899


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .+++|  ++++|++++.|+.|++||+++++. ..+..|...+.+++|+  ++++++++ .++.+..|++.          
T Consensus       260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~----------  324 (435)
T 1p22_A          260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIE----------  324 (435)
T ss_dssp             EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETT----------
T ss_pred             EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECC----------
Confidence            99999  688999999999999999999887 5567899999999994  66777664 45677777753          


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEE----EEEeeeeeCCCCCCcceee
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS----LSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~i~~v~~  410 (444)
                         +...+..+.+|. .|.+++|  ++++|++++.|      |.|++||+.++....    ......+.+|...|.+++|
T Consensus       325 ---~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  393 (435)
T 1p22_A          325 ---CGACLRVLEGHEELVRCIRF--DNKRIVSGAYD------GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  393 (435)
T ss_dssp             ---TCCEEEEECCCSSCEEEEEC--CSSEEEEEETT------SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             ---CCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCC------CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence               345667788888 8999998  78999999998      999999987544100    0023567899999999999


Q ss_pred             eeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          411 SFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       411 spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                        ++++     ++.+..||.|.+|++.-.+
T Consensus       394 --~~~~-----l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          394 --DEFQ-----IVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             --CSSC-----EEECCSSSEEEEEC-----
T ss_pred             --CCCE-----EEEEeCCCEEEEEECCCCC
Confidence              5554     7888899999999986543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-31  Score=242.78  Aligned_cols=240  Identities=10%  Similarity=0.074  Sum_probs=179.2

Q ss_pred             EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccc
Q 013347          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGA  185 (444)
Q Consensus       106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~  185 (444)
                      .+.+++.+|++|+.||.|++||+.+ ++....+.   ...|.++.|+|+   +++++.|++|++|+.........+... 
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~-  114 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKD-SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN-  114 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESS-SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC-
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCC-CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc-
Confidence            3456888999999999999999997 55544443   456788889887   888899999999998732111111111 


Q ss_pred             cccccccccCCCCceEEEEEee-ccCCCceEEEEEcc--CCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEEEE
Q 013347          186 ASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP--DGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSILK  260 (444)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp--~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~~~  260 (444)
                                     .+...+. +| ...|.+++|+|  +++++++++.|+ +|++||+++++.....  .+...+.+++
T Consensus       115 ---------------~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~dg-~i~~wd~~~~~~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A          115 ---------------KVLREIEVDS-ANEIIYMYGHNEVNTEYFIWADNRG-TIGFQSYEDDSQYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             ---------------CEEEEEECCC-SSCEEEEECCC---CCEEEEEETTC-CEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred             ---------------ceeEEeecCC-CCCEEEEEcCCCCCCCEEEEEeCCC-cEEEEECCCCcEEEEEecCCCCceEEEE
Confidence                           1223333 44 37899999999  999999999998 9999999998876544  3456799999


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCcee--cccc-CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~-~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      |+|++++|++|+.|+.|++||+++++..  .+.. |...|++++|+|++.+|+++++ + .+..|++....         
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~~---------  246 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKDV---------  246 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSST---------
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCCC---------
Confidence            9999999999999999999999998864  5666 9999999999999999998873 3 67777654321         


Q ss_pred             CCcccccccccCC-cee--EEEECCCCCEEEEEec-CCCccccceEEEEEcCCCC
Q 013347          338 VDLPDIVSLTGSQ-GIE--KIAWDASGERLAVSYK-GGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~--~~~~spdg~~l~~~~~-d~~~~~d~~i~vwd~~~~~  388 (444)
                       ....+..+..|. .+.  +++|+|+|++|++++. +      +.|+||++....
T Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d------~~i~v~~~~~~~  294 (343)
T 3lrv_A          247 -GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES------NSLTIYKFDKKT  294 (343)
T ss_dssp             -TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT------TEEEEEEECTTT
T ss_pred             -cceeecccccccccccceEEEECCCCCEEEEecCCC------CcEEEEEEcccc
Confidence             011122222233 344  6999999999999988 6      899999996543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.7e-30  Score=244.06  Aligned_cols=242  Identities=17%  Similarity=0.162  Sum_probs=192.3

Q ss_pred             ceEEEEEecC----C---CeEEEEECCCeEEEEEccCCCCc-----eeEEecCC-----CCCeEEEEEe----eCCCe-E
Q 013347          101 DLQGVSWHQH----K---HIVAFISGSTQVIVRDYEDSGKD-----ACILTSDS-----QRDVKVLEWR----PNGGR-S  158 (444)
Q Consensus       101 ~v~~~~~sp~----g---~~la~~~~dg~v~iw~~~~~~~~-----~~~~~~~~-----~~~v~~l~~s----~~~~~-l  158 (444)
                      .|++++|+|+    +   ++|++++.||.|++|++.+. ..     ...+ ..|     ...|.+++|+    |++.. +
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE-DETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRL  141 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC-TTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC-cccccccceee-cccccccCCCcEEEEEEeeccCCCCceEE
Confidence            4999999999    9   99999999999999999973 33     3333 467     5899999999    99888 8


Q ss_pred             EEEecCCcEEEEecCC------CCCcceeeccccccccccccCCCCceEEEEEe-------eccCCCceEEEEEccCCCe
Q 013347          159 LSVGCKGGICIWAPSY------PGNAASVRSGAASFLGALSRGPGTRWTLVDFL-------RSQNGEQITALSWGPDGRY  225 (444)
Q Consensus       159 l~~~~dg~v~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~sp~~~~  225 (444)
                      ++++.|+.|++||+..      .....                    |.....+       ..| ...|.+++|+|++ +
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLN--------------------WSPTLELQGTVESPMTP-SQFATSVDISERG-L  199 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTC--------------------CCCEEEEEEEECCSSSS-CCCCCEEEECTTS-E
T ss_pred             EEEeCCCcEEEEeCCccccccccceee--------------------ccCcceeeeeeccccCC-CCCceEEEECCCc-e
Confidence            8888999999999985      22222                    0011122       224 4789999999999 9


Q ss_pred             EEEEeeCCCeEEEEEcCCCCcee-eec---C---CCCeEEEEEecCCCeEEEEecC---CcEEEEECCCCce-ecccc--
Q 013347          226 LASASYESSSFTIWDVAQGLGTP-IRR---G---FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSS--  292 (444)
Q Consensus       226 l~~~~~d~~~i~iwd~~~~~~~~-~~~---~---~~~v~~~~~sp~~~~l~~~~~d---~~v~iwd~~~~~~-~~~~~--  292 (444)
                      |++++.|+ .|++||+++++... +..   |   ...+.+++|+|++++|++++.|   +.|++||+++++. ..+..  
T Consensus       200 l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~  278 (397)
T 1sq9_A          200 IATGFNNG-TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  278 (397)
T ss_dssp             EEEECTTS-EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEeCCC-cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCc
Confidence            99999998 99999999887665 444   6   8899999999999999999999   9999999998876 44555  


Q ss_pred             -----------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc------cC------
Q 013347          293 -----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT------GS------  349 (444)
Q Consensus       293 -----------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------  349 (444)
                                 |...|.+++|+|++++|++++ .++.+..|++..             ...+..+.      +|      
T Consensus       279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-------------~~~~~~~~~~~~~~~~~~~~~~  344 (397)
T 1sq9_A          279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKT-------------KERITTLNMHCDDIEIEEDILA  344 (397)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTT-------------TEEEEEEECCGGGCSSGGGCCC
T ss_pred             ccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCC-------------CceeEEEecccCcccchhhhhc
Confidence                       899999999999999998765 456777777532             33344444      44      


Q ss_pred             ---------C-ceeEEEECCCC----------CEEEEEecCCCccccceEEEEEcCCC
Q 013347          350 ---------Q-GIEKIAWDASG----------ERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       350 ---------~-~v~~~~~spdg----------~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                               . .|.+++|+|+|          ++|++++.|      +.|++|+++++
T Consensus       345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d------g~i~iw~~~~g  396 (397)
T 1sq9_A          345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD------RSIRWFREAGG  396 (397)
T ss_dssp             BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT------TEEEEEEEEC-
T ss_pred             cccccccccCCceeEEEeccccccccccccccceEEEecCC------CcEEEEEcCCC
Confidence                     6 89999999999          799999998      99999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.9e-30  Score=246.27  Aligned_cols=298  Identities=13%  Similarity=0.206  Sum_probs=218.9

Q ss_pred             ceEEEEEecCC----------CeEEEEEC----CCeEEEEEccC-------------------------CCCceeEEecC
Q 013347          101 DLQGVSWHQHK----------HIVAFISG----STQVIVRDYED-------------------------SGKDACILTSD  141 (444)
Q Consensus       101 ~v~~~~~sp~g----------~~la~~~~----dg~v~iw~~~~-------------------------~~~~~~~~~~~  141 (444)
                      +..++.|.|+.          .++++|+.    .+.|.++++..                         .++........
T Consensus        47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  126 (430)
T 2xyi_A           47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN  126 (430)
T ss_dssp             CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred             CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence            45677888765          45777663    35677776541                         01222233357


Q ss_pred             CCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          142 SQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       142 ~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      |.+.|++++|+|+++ .+++++.+|.|++|++........               ..+.......+.+|. ..|.+++|+
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------~~~~~~~~~~~~~h~-~~v~~l~~~  190 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------------PSGECQPDLRLRGHQ-KEGYGLSWN  190 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------------TTCCCCCSEEEECCS-SCCCCEEEC
T ss_pred             CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------------ccccCCCcEEecCCC-CCeEEEEeC
Confidence            999999999999744 555556689999999974211100               001122344567775 789999999


Q ss_pred             cCCC-eEEEEeeCCCeEEEEEcCCCCc--------eeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCc---e
Q 013347          221 PDGR-YLASASYESSSFTIWDVAQGLG--------TPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWT---S  287 (444)
Q Consensus       221 p~~~-~l~~~~~d~~~i~iwd~~~~~~--------~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~---~  287 (444)
                      |++. +|++++.|| .|++||+..+..        .....|...|.+++|+| ++.+|++++.|+.|++||++++.   .
T Consensus       191 ~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          191 PNLNGYLLSASDDH-TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             TTSTTEEEEECTTS-CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred             CCCCCeEEEEeCCC-eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence            9988 999999998 999999987432        23446788999999999 67888999999999999999873   2


Q ss_pred             -eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCC-EE
Q 013347          288 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGE-RL  364 (444)
Q Consensus       288 -~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~-~l  364 (444)
                       ..+..|...|++++|+|+++.++++++.++.+..|++..            ....+..+..|. .|.+++|+|+++ +|
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN------------LKLKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC------------TTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC------------CCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence             345689999999999999986554556667777777642            124566777777 999999999995 68


Q ss_pred             EEEecCCCccccceEEEEEcCCCCeEE---------EEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          365 AVSYKGGDDIYKGLIAIYDARRTPLIS---------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ++++.|      +.|+|||+.......         ...+..+.+|...|++++|+|++++    +++.+..+|.|.+|.
T Consensus       338 ~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          338 ASSGTD------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW----IICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EEEETT------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT----EEEEEETTSEEEEEE
T ss_pred             EEEeCC------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC----EEEEEECCCCEEEeE
Confidence            888888      999999998622100         0223566789999999999999885    577788999999998


Q ss_pred             ee
Q 013347          436 LI  437 (444)
Q Consensus       436 ~~  437 (444)
                      +.
T Consensus       408 ~~  409 (430)
T 2xyi_A          408 MA  409 (430)
T ss_dssp             EC
T ss_pred             cc
Confidence            75

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.8e-31  Score=242.54  Aligned_cols=239  Identities=12%  Similarity=0.200  Sum_probs=191.5

Q ss_pred             cceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCC
Q 013347          100 VDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSY  174 (444)
Q Consensus       100 ~~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~  174 (444)
                      ..|++++|+|+    +++|++++.||.|++||+.+ ++....+ .+|...|.+++|+| ++..+++++.||.|++||+..
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT-MQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT-CCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh-ceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            45999999999    67999999999999999987 4555544 48999999999999 877888888899999999984


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEe---eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee--
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--  249 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~--  249 (444)
                      ..                         ....+   .+|. ..|.+++|+|++++|++++.|+ .|++||+++++....  
T Consensus       148 ~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~  200 (366)
T 3k26_A          148 DT-------------------------LVAIFGGVEGHR-DEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIK  200 (366)
T ss_dssp             TE-------------------------EEEEECSTTSCS-SCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHH
T ss_pred             Ce-------------------------EEEEeccccccc-CceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccc
Confidence            32                         22333   4564 8999999999999999999998 999999987643321  


Q ss_pred             ---------------------------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---------------
Q 013347          250 ---------------------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---------------  287 (444)
Q Consensus       250 ---------------------------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---------------  287 (444)
                                                 ..|...|.+++|+  +++|++++.|+.|++||+++++.               
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence                                       1278899999998  77999999999999999987643               


Q ss_pred             eccccCCCceeEEEECCC--CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--C-ceeEEEECCCCC
Q 013347          288 EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAWDASGE  362 (444)
Q Consensus       288 ~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~spdg~  362 (444)
                      ..+..|...+++++|+|+  +++|+++ +.++.+..|++.....         .......+.+|  . .|.+++|+|+++
T Consensus       279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~vwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          279 GRFDYSQCDIWYMRFSMDFWQKMLALG-NQVGKLYVWDLEVEDP---------HKAKCTTLTHHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             EEEECSSCCSSCCCCEECTTSSEEEEE-CTTSCEEEEECCSSSG---------GGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             ccccccCCcEEEEEEcCCCCCcEEEEE-ecCCcEEEEECCCCCC---------ccccceEEcccccCCceEEEEeCCCCC
Confidence            234468888999999999  9998876 4557777777643210         11123356666  4 899999999999


Q ss_pred             EEEEEecCCCccccceEEEEEcC
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +|++++.|      |.|++||+.
T Consensus       349 ~l~s~~~d------g~i~iwd~~  365 (366)
T 3k26_A          349 ILIAVCDD------ASIWRWDRL  365 (366)
T ss_dssp             EEEEEETT------SEEEEEEC-
T ss_pred             eEEEEeCC------CEEEEEEec
Confidence            99999998      999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=2.6e-30  Score=241.67  Aligned_cols=237  Identities=12%  Similarity=0.151  Sum_probs=183.8

Q ss_pred             ccceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEe--cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347           99 EVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus        99 ~~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      ...|.+++|+| ++++|++++.|+.|++||+..  .....+.  ..|...|.+++|+|++..+++++.|+.|++||++ .
T Consensus       118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~  194 (383)
T 3ei3_B          118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G  194 (383)
T ss_dssp             TCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S
T ss_pred             CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C
Confidence            34799999999 789999999999999999985  2333332  2345889999999999999999999999999985 1


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCC----CCceeee
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ----GLGTPIR  250 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~----~~~~~~~  250 (444)
                      .                         ....+.+|. ..|.+++|+|+++ +|++++.|+ .|++||+++    +......
T Consensus       195 ~-------------------------~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~  247 (383)
T 3ei3_B          195 H-------------------------EIFKEKLHK-AKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIKDKNSYIAEM  247 (383)
T ss_dssp             C-------------------------EEEEEECSS-SCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCCSTTCEEEEE
T ss_pred             C-------------------------EEEEeccCC-CcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCCcccceEEEe
Confidence            1                         344566775 8999999999999 899999998 999999998    4555666


Q ss_pred             cCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce-ecccc-------CCCceeEEEECCCCCEEEEEE--------
Q 013347          251 RGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSS-------TSGFVTGATWDPEGRMILLAF--------  313 (444)
Q Consensus       251 ~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~-------~~~~v~~~~~sp~g~~l~~~~--------  313 (444)
                      .|...|.+++|+| ++++|++++.|+.|++||+++++. ..+..       |...+. +.|+|++..++++.        
T Consensus       248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~  326 (383)
T 3ei3_B          248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLL  326 (383)
T ss_dssp             ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCT
T ss_pred             cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCccccc
Confidence            7899999999999 999999999999999999998765 22332       233343 35666555555443        


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCccccccccc--CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      +.++.+..|++.             +...+..+.+  +. .+..++|+|+|++|++++ |      +.|++||+++
T Consensus       327 s~d~~i~iwd~~-------------~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d------~~i~iw~~~~  382 (383)
T 3ei3_B          327 NDKRTIDIYDAN-------------SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G------FNILIWNRED  382 (383)
T ss_dssp             TCCCCEEEEETT-------------TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T------TEEEEEECC-
T ss_pred             CCCCeEEEEecC-------------CCceeeeecCCCCCceEEEEEEecCccEEEEec-C------CcEEEEecCC
Confidence            345566666642             3445566665  33 567779999999999996 7      8999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=8.8e-30  Score=233.79  Aligned_cols=247  Identities=15%  Similarity=0.181  Sum_probs=190.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+|++|++++.|+.|++|+... ..... ....+...+..+.+++++..+++++.|+.+++||+.....   
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~---  162 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTT-GTTTR-RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---  162 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE-EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeecc-cceee-eecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---
Confidence            499999999999999999999999999986 33333 3347788899999999989999999999999999872211   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLS  257 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~  257 (444)
                                           ....+.+|. ..+..++|++++  .++++++.|+ .|++||+++++... +..|.+.|.
T Consensus       163 ---------------------~~~~~~~~~-~~v~~~~~~~~~~~~~~~s~~~d~-~i~i~d~~~~~~~~~~~~h~~~v~  219 (340)
T 4aow_A          163 ---------------------YTVQDESHS-EWVSCVRFSPNSSNPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLN  219 (340)
T ss_dssp             ---------------------EEECSSSCS-SCEEEEEECSCSSSCEEEEEETTS-CEEEEETTTTEEEEEECCCSSCEE
T ss_pred             ---------------------EEEEecccc-CcccceEEccCCCCcEEEEEcCCC-EEEEEECCCCceeeEecCCCCcEE
Confidence                                 122344554 789999998865  4678888998 99999999887665 556889999


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +++|+|++++|++++.|+.|++||+++.+......+...+.++.|+|++.+++.+.  ++.+..|++.....     +..
T Consensus       220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~-----~~~  292 (340)
T 4aow_A          220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT--GPSIKIWDLEGKII-----VDE  292 (340)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEE-----EEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccC--CCEEEEEECCCCeE-----EEe
Confidence            99999999999999999999999999988866556677899999999988776553  35566665432100     000


Q ss_pred             C-CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          338 V-DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       338 ~-~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      . .........+|. .|++++|+|||++|++++.|      |.|+|||+++|.
T Consensus       293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D------g~v~iW~~~tGt  339 (340)
T 4aow_A          293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD------NLVRVWQVTIGT  339 (340)
T ss_dssp             ECCC-------CCCCCEEEEEECTTSSEEEEEETT------SCEEEEEEEC--
T ss_pred             ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC------CEEEEEeCCCcC
Confidence            0 011122334566 89999999999999999998      999999999864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=2.8e-30  Score=243.06  Aligned_cols=246  Identities=17%  Similarity=0.282  Sum_probs=195.5

Q ss_pred             cceEEEEEec-CCCeEEEEECCCeEEEEEccCCC------CceeEEecCCCCCeEEEEEeeCC-CeEEEEecCCcEEEEe
Q 013347          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSG------KDACILTSDSQRDVKVLEWRPNG-GRSLSVGCKGGICIWA  171 (444)
Q Consensus       100 ~~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~------~~~~~~~~~~~~~v~~l~~s~~~-~~ll~~~~dg~v~iw~  171 (444)
                      ..|++++|+| ++++||+++.||.|+||++.+..      .....+ .+|...|.+++|+|++ ..+++++.|+.|++||
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence            4699999999 99999999999999999998742      233333 5899999999999997 4677888899999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      +...                         .....+  ..|. ..|.+++|+|++++|++++.|+ .|++||+++++....
T Consensus       161 ~~~~-------------------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~  213 (402)
T 2aq5_A          161 VGTG-------------------------AAVLTLGPDVHP-DTIYSVDWSRDGALICTSCRDK-RVRVIEPRKGTVVAE  213 (402)
T ss_dssp             TTTT-------------------------EEEEEECTTTCC-SCEEEEEECTTSSCEEEEETTS-EEEEEETTTTEEEEE
T ss_pred             CCCC-------------------------CccEEEecCCCC-CceEEEEECCCCCEEEEEecCC-cEEEEeCCCCceeee
Confidence            9833                         234445  5564 8999999999999999999998 999999999877664


Q ss_pred             e--cCCCC-eEEEEEecCCCeEEEE---ecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          250 R--RGFGG-LSILKWSPTGDYFFAA---KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       250 ~--~~~~~-v~~~~~sp~~~~l~~~---~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      .  .|.+. +.+++|+|++++|++|   +.|+.|++||+++++.   .....+...+.+++|+|+++++++++..++.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~  293 (402)
T 2aq5_A          214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIR  293 (402)
T ss_dssp             EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred             eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence            3  55554 8999999999999998   7899999999998764   222357788999999999999988777778888


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .|++....+         ....+..+.....|.+++|+|++.++++  .+      +.+++|++.++...
T Consensus       294 i~d~~~~~~---------~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~------~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          294 YFEITSEAP---------FLHYLSMFSSKESQRGMGYMPKRGLEVN--KC------EIARFYKLHERKCE  346 (402)
T ss_dssp             EEEECSSTT---------CEEEEEEECCSSCCSEEEECCGGGSCGG--GT------EEEEEEEEETTEEE
T ss_pred             EEEecCCCc---------ceEeecccccCCcccceEEeccccccee--cc------eeEEEEEcCCCcEE
Confidence            888753210         0112223332238999999999998874  34      78999999987643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.98  E-value=2.9e-29  Score=239.42  Aligned_cols=273  Identities=14%  Similarity=0.187  Sum_probs=217.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+  +++|++++.||.|++||+.+ ++....+ .+|...|.+++|++  +.+++++.|+.|++||+....   
T Consensus       160 ~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~---  230 (445)
T 2ovr_B          160 GGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQ---  230 (445)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCC---
T ss_pred             CCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEE-CCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCc---
Confidence            469999998  67999999999999999987 4444444 58999999999964  578999999999999998332   


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                            ....+.+|. ..|.+++|  +++++++++.|+ .|++||+++++... +..|...|.+
T Consensus       231 ----------------------~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~  284 (445)
T 2ovr_B          231 ----------------------CLHVLMGHV-AAVRCVQY--DGRRVVSGAYDF-MVKVWDPETETCLHTLQGHTNRVYS  284 (445)
T ss_dssp             ----------------------EEEEEECCS-SCEEEEEE--CSSCEEEEETTS-CEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred             ----------------------EEEEEcCCc-ccEEEEEE--CCCEEEEEcCCC-EEEEEECCCCcEeEEecCCCCceEE
Confidence                                  344566775 89999999  788999999998 99999999887665 4567889999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ++|  +++++++++.|+.|++||+++++. ..+..|...+.++.++  ++++++++ .++.+..|++.            
T Consensus       285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~------------  347 (445)
T 2ovr_B          285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIK------------  347 (445)
T ss_dssp             EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETT------------
T ss_pred             EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECC------------
Confidence            999  789999999999999999999887 4567888888888874  56777654 45677777753            


Q ss_pred             CCccccccccc---CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          338 VDLPDIVSLTG---SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       338 ~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                       +...+..+.+   |. .|.+++|+  +++|++++.|      |.|++||+.+++.+.........+|...|++++|+|+
T Consensus       348 -~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          348 -TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             -TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             -CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence             2334455554   55 89999995  6899999998      9999999999887632111111467888999999999


Q ss_pred             CCCCCCceEEEEeccce----eeeeeeee
Q 013347          414 DKFKQGPLLSVCWSSGF----CCTYPLIF  438 (444)
Q Consensus       414 g~~~~~~~l~~~~~~g~----i~~~~~~~  438 (444)
                      |.+     ++++..||.    |.+|++..
T Consensus       419 ~~~-----la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          419 KLV-----CAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEE-----EEEECSSSSSCCEEEEEECCC
T ss_pred             EEE-----EEEcccCCCCccEEEEEECCC
Confidence            875     889999997    88888754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=8.1e-31  Score=246.88  Aligned_cols=251  Identities=11%  Similarity=0.129  Sum_probs=186.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+|       .++.+.+|+.+    ....+...|...|.+++|||+|..+++++.||.|++|+.+       
T Consensus        54 ~v~~V~FsPdg-------~~~~~~~~~~~----~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-------  115 (588)
T 2j04_A           54 NLFHVKEFPLE-------FENKLDFELAQ----QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-------  115 (588)
T ss_dssp             GTEEEEEECCC-------CCCTTTTSCCC----SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-------
T ss_pred             cEEEEEECCCC-------CcceEEEEeCC----CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-------
Confidence            39999999999       45555555433    2223333668899999999999999999999999999965       


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCC----CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc--------ee
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNG----EQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--------TP  248 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~--------~~  248 (444)
                                          .++..+. |+.    ..+.+++|||||++|++|+.|| +|++||+.++..        ..
T Consensus       116 --------------------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG-tVkIWd~~~~~l~~~~~i~l~t  173 (588)
T 2j04_A          116 --------------------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG-ELQFFSIRKNSENTPEFYFESS  173 (588)
T ss_dssp             --------------------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS-EEEEEECCCCTTTCCCCEEEEE
T ss_pred             --------------------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC-EEEEEECCCCccccccceeeee
Confidence                                1333445 431    2599999999999999999998 999999998753        22


Q ss_pred             e----ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee----cc-ccCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          249 I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PW-SSTSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       249 ~----~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~----~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                      +    .+|...|.+++|+|+|  +++++.|++|++||+.+++..    .+ ..|...|.+++|+  |+.++++++  +.+
T Consensus       174 i~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~--~tI  247 (588)
T 2j04_A          174 IRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCP--GYV  247 (588)
T ss_dssp             EECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECS--SEE
T ss_pred             eecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeC--CeE
Confidence            3    3456799999999999  888889999999999987753    24 3788899999999  688887753  566


Q ss_pred             EEEEeecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEE--CCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE-
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-  394 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~--spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~-  394 (444)
                      ..|++.              ......+. +|. .|.+++|  +||++.|++++.+      |+ ++|..+.   +...+ 
T Consensus       248 kLWd~~--------------~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed------G~-klw~~d~---~~~spd  303 (588)
T 2j04_A          248 HKIDLK--------------NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT------SY-KVLLEDE---LHVTAD  303 (588)
T ss_dssp             EEEETT--------------TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC------EE-EEEESSS---EEEECC
T ss_pred             EEEECC--------------CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC------CC-EEEeecc---EEECCC
Confidence            666642              23332333 677 8999999  9999999999988      88 8888752   11111 


Q ss_pred             --------------------eeeeeCCCCCCcceeeeeCCCCCCCceEEEEec
Q 013347          395 --------------------IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  427 (444)
Q Consensus       395 --------------------~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~  427 (444)
                                          ...+.+ ...|++++|||||+.     ++++++
T Consensus       304 ~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~-----lA~~~~  350 (588)
T 2j04_A          304 NIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYS-----IAIVYD  350 (588)
T ss_dssp             CSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSE-----EEEEEE
T ss_pred             ceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCE-----EEEEEe
Confidence                                111122 334788999999986     555543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=8.8e-30  Score=242.03  Aligned_cols=285  Identities=12%  Similarity=0.095  Sum_probs=220.7

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE----ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~----~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      .+.+++|+|++.++++++.++.|++||+.+ ++.....    ..+|...|.+++|++++..+++++.|+.|++||++...
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTT-CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCC-CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            467899999777888878889999999987 4443321    23788899999999997667777778999999997332


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCceeeecCCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRRGFGG  255 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~~~~~  255 (444)
                                               ....+..|. ..+.+++|+|+++.+++++ .++ .|++||+++++..........
T Consensus       203 -------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~  255 (433)
T 3bws_A          203 -------------------------YKATVDLTG-KWSKILLYDPIRDLVYCSNWISE-DISVIDRKTKLEIRKTDKIGL  255 (433)
T ss_dssp             -------------------------EEEEEECSS-SSEEEEEEETTTTEEEEEETTTT-EEEEEETTTTEEEEECCCCSE
T ss_pred             -------------------------EEEEEcCCC-CCeeEEEEcCCCCEEEEEecCCC-cEEEEECCCCcEEEEecCCCC
Confidence                                     233444553 7899999999999886665 576 999999998877766666677


Q ss_pred             eEEEEEecCCCeEEEEe--------cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          256 LSILKWSPTGDYFFAAK--------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      +.+++|+|+++++++++        .|+.|++||+++++......+...+.+++|+|+++.+++++..++.+..|++.  
T Consensus       256 ~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~--  333 (433)
T 3bws_A          256 PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK--  333 (433)
T ss_dssp             EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT--
T ss_pred             ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC--
Confidence            99999999999998887        48899999999988766666667889999999999888787777888887753  


Q ss_pred             CCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc---------cccceEEEEEcCCCCeEEEEEeeee
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---------IYKGLIAIYDARRTPLISLSLIGFI  398 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~---------~~d~~i~vwd~~~~~~~~~~~~~~~  398 (444)
                                 +...+..+.....+.+++|+|+|++|++++.+.+.         ..||.|++||+.+++..     ..+
T Consensus       334 -----------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-----~~~  397 (433)
T 3bws_A          334 -----------EKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-----EFW  397 (433)
T ss_dssp             -----------TTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-----EEE
T ss_pred             -----------CCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-----EEe
Confidence                       22334444434478999999999999988874210         01379999999987765     334


Q ss_pred             eCCCCCCcceeeeeCCCCCCCceEEEE-eccceeeeeeee
Q 013347          399 RGPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI  437 (444)
Q Consensus       399 ~~~~~~i~~v~~spdg~~~~~~~l~~~-~~~g~i~~~~~~  437 (444)
                      .. ...+.+++|+|||++     |.++ ..+|.|.+|++.
T Consensus       398 ~~-~~~~~~~~~s~dg~~-----l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          398 EA-GNQPTGLDVSPDNRY-----LVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EC-SSSEEEEEECTTSCE-----EEEEETTTTEEEEEEET
T ss_pred             cC-CCCCceEEEcCCCCE-----EEEEECCCCeEEEEEec
Confidence            44 456889999999986     5554 459999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=7.7e-29  Score=236.46  Aligned_cols=260  Identities=13%  Similarity=0.176  Sum_probs=211.7

Q ss_pred             EecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccc
Q 013347          107 WHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAA  186 (444)
Q Consensus       107 ~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~  186 (444)
                      ++++|++|++|+.||.|++||+.+ ++....+ .+|...|++++|+  ++.+++++.||.|++||+...           
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~-----------  189 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTL-VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG-----------  189 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTT-CCEEEEC-CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT-----------
T ss_pred             EEEcCCEEEEEECCCcEEEEECCC-CcEEEEE-cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC-----------
Confidence            555789999999999999999987 5554444 5899999999998  368889999999999999832           


Q ss_pred             ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCC
Q 013347          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTG  265 (444)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~  265 (444)
                                    .....+.+|. ..|.++.|+  ++.+++++.|+ .|++||+.+++... +..|...+.+++|  ++
T Consensus       190 --------------~~~~~~~~h~-~~v~~~~~~--~~~l~s~s~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          190 --------------ECIHTLYGHT-STVRCMHLH--EKRVVSGSRDA-TLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             --------------EEEEEECCCS-SCEEEEEEE--TTEEEEEETTS-EEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             --------------cEEEEECCCC-CcEEEEEec--CCEEEEEeCCC-EEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence                          3455677775 799999995  57899999998 99999999887665 5568899999999  78


Q ss_pred             CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc
Q 013347          266 DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  344 (444)
Q Consensus       266 ~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                      +++++++.|+.|++||+++++. ..+..|...+.+++|  ++.++++++. ++.+..|++.             +...+.
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~i~d~~-------------~~~~~~  313 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVE-------------TGNCIH  313 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET-TSCEEEEETT-------------TCCEEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC-CCeEEEEECC-------------CCCEEE
Confidence            8999999999999999998877 456789999999999  7788886644 4667777653             344566


Q ss_pred             ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC---CCCCCcceeeeeCCCCCCCc
Q 013347          345 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKFKQGP  420 (444)
Q Consensus       345 ~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~i~~v~~spdg~~~~~~  420 (444)
                      .+.+|. .+.++.+  ++++|++++.|      |.|++||+++++..     ..+.+   |...|.+++|++  +     
T Consensus       314 ~~~~~~~~v~~~~~--~~~~l~~~~~d------g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~-----  373 (445)
T 2ovr_B          314 TLTGHQSLTSGMEL--KDNILVSGNAD------STVKIWDIKTGQCL-----QTLQGPNKHQSAVTCLQFNK--N-----  373 (445)
T ss_dssp             EECCCCSCEEEEEE--ETTEEEEEETT------SCEEEEETTTCCEE-----EEECSTTSCSSCEEEEEECS--S-----
T ss_pred             EEcCCcccEEEEEE--eCCEEEEEeCC------CeEEEEECCCCcEE-----EEEccCCCCCCCEEEEEECC--C-----
Confidence            777777 7777776  56799999988      99999999987765     34554   788899999853  3     


Q ss_pred             eEEEEeccceeeeeeee
Q 013347          421 LLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       421 ~l~~~~~~g~i~~~~~~  437 (444)
                      +++.+..+|.|.+|++.
T Consensus       374 ~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          374 FVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCeEEEEECC
Confidence            58888999999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.7e-31  Score=249.71  Aligned_cols=278  Identities=12%  Similarity=0.048  Sum_probs=205.2

Q ss_pred             EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeecc
Q 013347          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (444)
Q Consensus       106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~  184 (444)
                      .|+|+++.+++++      .|+..  ++....+..+|.+.|++++|+| ++..|++++.||+|++||+..........  
T Consensus        34 ~f~~~~~~~~~~~------~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--  103 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS--  103 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS--
T ss_pred             hcCCccccccccc------ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc--
Confidence            3688888887654      37644  5566666568999999999999 98889999999999999987311000000  


Q ss_pred             ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC---CCCceeeec----------
Q 013347          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA---QGLGTPIRR----------  251 (444)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~---~~~~~~~~~----------  251 (444)
                                       ....+ .| ...|.+++|+|++++|++++.|+ .|++||+.   .++......          
T Consensus       104 -----------------~~~~~-~h-~~~v~~~~~~~~~~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~  163 (437)
T 3gre_A          104 -----------------SSLTY-DC-SSTVTQITMIPNFDAFAVSSKDG-QIIVLKVNHYQQESEVKFLNCECIRKINLK  163 (437)
T ss_dssp             -----------------CSEEE-EC-SSCEEEEEECTTSSEEEEEETTS-EEEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred             -----------------eeeec-cC-CCCEEEEEEeCCCCEEEEEeCCC-EEEEEEeccccCCceeeccccceeEEEEcc
Confidence                             00111 34 48999999999999999999998 99999995   443332111          


Q ss_pred             ---CCCCeEEEE--EecCCCeEEEEecCCcEEEEECCCCce-ecccc--CCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          252 ---GFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSS--TSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       252 ---~~~~v~~~~--~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~--~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                         +...+.++.  +++++++|++++.|+.|++||+++++. ..+..  |...|++++|+|++++|++++. ++.+..|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd  242 (437)
T 3gre_A          164 NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWD  242 (437)
T ss_dssp             GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEE
T ss_pred             CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEE
Confidence               445677776  567899999999999999999999887 44555  7899999999999999997654 46677776


Q ss_pred             eecCCCCcCCCcCCCCcccccccc-cCC-ceeEEEEC----CCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLT-GSQ-GIEKIAWD----ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  397 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~s----pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~  397 (444)
                      +.             ....+..+. .|. .|.+++|+    |++++|++++.|      +.|++||+++++..     ..
T Consensus       243 ~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~-----~~  298 (437)
T 3gre_A          243 IR-------------FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK------TFLTIWNFVKGHCQ-----YA  298 (437)
T ss_dssp             TT-------------TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT------EEEEEEETTTTEEE-----EE
T ss_pred             cC-------------CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC------CcEEEEEcCCCcEE-----EE
Confidence            53             234455554 445 89999555    578899999988      99999999987765     45


Q ss_pred             eeCCCCCCcceeeeeCCCC--------------------CCCceEEEEeccceeeeeeeee
Q 013347          398 IRGPGDNPKPVAFSFHDKF--------------------KQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       398 ~~~~~~~i~~v~~spdg~~--------------------~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +.+|...+..+.|+|+++.                    ..+.+|+.+..||.|++|++.-
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTC
T ss_pred             EEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCC
Confidence            6666666666666666521                    1124688888999999999753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=6.8e-30  Score=242.90  Aligned_cols=210  Identities=14%  Similarity=0.109  Sum_probs=167.5

Q ss_pred             cCCCCCeEEEEEeeCCC-eEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          140 SDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..|...|++|+|+|... .|++++.||.|+|||+......                       ....+.+|. ..|++++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------------------~~~~~~gH~-~~V~~l~  171 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------------------TFIKGIGAG-GSITGLK  171 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------------------EEECCCSSS-CCCCEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------------------eEEEccCCC-CCEEEEE
Confidence            47888999999999544 5667778999999999844332                       222355675 8999999


Q ss_pred             Ecc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecC---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347          219 WGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS  294 (444)
Q Consensus       219 ~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  294 (444)
                      |+| ++++|++++.|+ +|++||++++....+..+   ...+.+++|+|++++|++|+.||.|++||+++.....+..|.
T Consensus       172 f~p~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~  250 (435)
T 4e54_B          172 FNPLNTNQFYASSMEG-TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHK  250 (435)
T ss_dssp             ECSSCTTEEEEECSSS-CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred             EeCCCCCEEEEEeCCC-EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence            998 789999999998 999999987655444433   345789999999999999999999999999887777788999


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ..|++++|+|+++.++++++.++.+..|++....          ....+....+|. .|++++|+|+|++|++++.|   
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~----------~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D---  317 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR----------GKASFLYSLPHRHPVNAACFSPDGARLLTTDQK---  317 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC----------SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS---
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEeccccc----------ccceEEEeeeccccccceeECCCCCeeEEEcCC---
Confidence            9999999999998666566666777777764321          111223334666 89999999999999999998   


Q ss_pred             cccceEEEEEcCCCCeE
Q 013347          374 IYKGLIAIYDARRTPLI  390 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~  390 (444)
                         +.|+|||+.++...
T Consensus       318 ---~~i~iwd~~~~~~~  331 (435)
T 4e54_B          318 ---SEIRVYSASQWDCP  331 (435)
T ss_dssp             ---SCEEEEESSSSSSE
T ss_pred             ---CEEEEEECCCCccc
Confidence               99999999987765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2e-29  Score=232.92  Aligned_cols=276  Identities=9%  Similarity=0.075  Sum_probs=196.8

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEE-EecCCcEEEEecCCCCCc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS-VGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~-~~~dg~v~iw~~~~~~~~  178 (444)
                      ..|++++|+|||++||+|+.++ ++||++.. ......   .+...+..+++.++++.+++ ++.|++|++||+.+..  
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--   92 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMS---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--   92 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEE---EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--
T ss_pred             CceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeee---eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--
Confidence            3599999999999999987665 78999876 322222   12225788889888777744 4557999999998332  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~~~~v~  257 (444)
                                             .+..+. +. ..|.+++|+++.  ++++ .++ .|++||+.++ +.......  ...
T Consensus        93 -----------------------~~~~~~-~~-~~v~~v~~~~~~--~~~~-~~~-~i~i~d~~~~~~~~~~~~~--~~~  141 (355)
T 3vu4_A           93 -----------------------DVSRIK-VD-APVKDLFLSREF--IVVS-YGD-VISVFKFGNPWKRITDDIR--FGG  141 (355)
T ss_dssp             -----------------------EEEEEE-CS-SCEEEEEECSSE--EEEE-ETT-EEEEEESSTTCCBSSCCEE--EEE
T ss_pred             -----------------------EEEEEE-CC-CceEEEEEcCCE--EEEE-EcC-EEEEEECCCCceeeEEecc--CCc
Confidence                                   233344 22 689999998864  3333 466 9999999987 44432222  445


Q ss_pred             EEEEecCCCeEEE--EecCCcEEEEECCCCc-----------------eeccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          258 ILKWSPTGDYFFA--AKFDGTFYLWETNTWT-----------------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       258 ~~~~sp~~~~l~~--~~~d~~v~iwd~~~~~-----------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      .+++++  ++++.  |+.||.|++||+++++                 ...+.+|...|++++|+|+|++|++++. ++.
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-d~~  218 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-DGT  218 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET-TCS
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC-CCC
Confidence            567777  56665  5789999999999876                 4567799999999999999999997754 454


Q ss_pred             -EEEEEeecCCCCcCCCcCCCCcccccccc-c-CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347          319 -LGSIHFASKPPSLDAHLLPVDLPDIVSLT-G-SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~  394 (444)
                       +..|++.             +...+.++. + |. .|.+++|+|+|++|++++.|      ++|++||++.+.......
T Consensus       219 ~v~iwd~~-------------~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~~~~~~~~~  279 (355)
T 3vu4_A          219 IIRVFKTE-------------DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFNDQDNKRHA  279 (355)
T ss_dssp             EEEEEETT-------------TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT------CEEEEEESSCCSCCCSEE
T ss_pred             EEEEEECC-------------CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC------CEEEEEEccCCCCccccc
Confidence             6666653             345566776 4 66 99999999999999999998      999999997653221111


Q ss_pred             ee---------------e--e-eCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          395 IG---------------F--I-RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       395 ~~---------------~--~-~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      +.               .  + ..+......++|++||++     ++++..+|.+..|.+....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-----l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-----VVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-----EEEETTTTEEEEEEEEEET
T ss_pred             ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-----EEEEeCCCeEEEEEEEcCC
Confidence            00               0  1 111223467899999875     7888889999999887543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=6.5e-29  Score=232.77  Aligned_cols=270  Identities=14%  Similarity=0.099  Sum_probs=206.5

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeecccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLG  190 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~  190 (444)
                      .++++++.|+.|++||+.+ ++....+ ..| ..+.+++|+|+++.+++++ .++.|++||+...+              
T Consensus         3 ~l~vs~~~d~~v~v~d~~~-~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~--------------   65 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTS-NKVTATI-PVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--------------   65 (391)
T ss_dssp             EEEEEETTTTEEEEEETTT-TEEEEEE-ECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--------------
T ss_pred             EEEEEcCCCCEEEEEECCC-CeEEEEe-ecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCe--------------
Confidence            4577888999999999987 4444444 244 4689999999988775555 68999999997332              


Q ss_pred             ccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeE-E
Q 013347          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF-F  269 (444)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~  269 (444)
                                 +...+..+  ..+.+++|+|++++|++++.+.+.|++||+.+++......+...+.+++|+|++++| +
T Consensus        66 -----------~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           66 -----------VIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             -----------EEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEE
T ss_pred             -----------EEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEE
Confidence                       33344444  489999999999988766644239999999999887777777889999999999987 6


Q ss_pred             EEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347          270 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  349 (444)
Q Consensus       270 ~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (444)
                      +++.++.|++||+.+++..........+.+++|+|+++++++++..++.+..|++.             ....+..+..+
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-------------~~~~~~~~~~~  199 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-------------TNSVIDTVKVE  199 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-------------TTEEEEEEECS
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-------------CCeEEEEEecC
Confidence            78889999999999988755444456679999999999997777777788877753             22334444444


Q ss_pred             CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccc
Q 013347          350 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  429 (444)
Q Consensus       350 ~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g  429 (444)
                      ..+.+++|+|+|++|++++.+..   ++.|++||+.+++..     ..+..|. .+.+++|+|||++    +++.+..+|
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~----l~~s~~~d~  266 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKY---FNTVSMIDTGTNKIT-----ARIPVGP-DPAGIAVTPDGKK----VYVALSFXN  266 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSS---CCEEEEEETTTTEEE-----EEEECCS-SEEEEEECTTSSE----EEEEETTTT
T ss_pred             CCccceEECCCCCEEEEEecCcC---CCcEEEEECCCCeEE-----EEEecCC-CccEEEEccCCCE----EEEEcCCCC
Confidence            57899999999999999884211   189999999987654     3455543 4688999999986    335556789


Q ss_pred             eeeeeeee
Q 013347          430 FCCTYPLI  437 (444)
Q Consensus       430 ~i~~~~~~  437 (444)
                      .|.+|++.
T Consensus       267 ~v~v~d~~  274 (391)
T 1l0q_A          267 TVSVIDTA  274 (391)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99998864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=3.9e-30  Score=238.41  Aligned_cols=235  Identities=13%  Similarity=0.109  Sum_probs=176.9

Q ss_pred             eEEEEEecCCCeEEEE-----------ECCCeEEEEEccCCCCceeEE-------ecCCCCCeEEEEEeeCCCeEEEEe-
Q 013347          102 LQGVSWHQHKHIVAFI-----------SGSTQVIVRDYEDSGKDACIL-------TSDSQRDVKVLEWRPNGGRSLSVG-  162 (444)
Q Consensus       102 v~~~~~sp~g~~la~~-----------~~dg~v~iw~~~~~~~~~~~~-------~~~~~~~v~~l~~s~~~~~ll~~~-  162 (444)
                      |.++++  +++.+++|           +.|+.+++|++..........       ...+...+.+++|||||+.+++++ 
T Consensus        76 v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~  153 (365)
T 4h5i_A           76 PTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS  153 (365)
T ss_dssp             CCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred             eEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence            555554  45566654           357889999998643222211       123455689999999988887655 


Q ss_pred             -cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc
Q 013347          163 -CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  241 (444)
Q Consensus       163 -~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~  241 (444)
                       .|++|+|||+.+..                         ....+. |. ..|.+++|+|||++|++++.+  .+++|+.
T Consensus       154 ~~d~~i~iwd~~~~~-------------------------~~~~~~-~~-~~V~~v~fspdg~~l~s~s~~--~~~~~~~  204 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLT-------------------------EKFEIE-TR-GEVKDLHFSTDGKVVAYITGS--SLEVIST  204 (365)
T ss_dssp             CSSCEEEEEETTTTE-------------------------EEEEEE-CS-SCCCEEEECTTSSEEEEECSS--CEEEEET
T ss_pred             CCCCEEEEeECCCCc-------------------------EEEEeC-CC-CceEEEEEccCCceEEeccce--eEEEEEe
Confidence             37999999998332                         233343 33 689999999999999998865  5777877


Q ss_pred             CCCCcee---eecCCCCeEEEEEecCCCeEEEEecCC----cEEEEECCCCce-----eccccCCCceeEEEECCCCCEE
Q 013347          242 AQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMI  309 (444)
Q Consensus       242 ~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l  309 (444)
                      .+++...   ...|...|.+++|+|+++++++++.|+    .+++||+.....     ..+..|...|++++|+|+|++|
T Consensus       205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELA  284 (365)
T ss_dssp             TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred             ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCce
Confidence            7776543   234667899999999999999998887    688899877654     2356888999999999999999


Q ss_pred             EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-cccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      ++++. ++.++.|++.             +.+.+.+ +.+|. .|++++|+|||++||++|.|      ++|+||++..+
T Consensus       285 asgs~-D~~V~iwd~~-------------~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D------~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASN-DNSIALVKLK-------------DLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA------NTIHIIKLPLN  344 (365)
T ss_dssp             EEEET-TSCEEEEETT-------------TTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT------SEEEEEECCTT
T ss_pred             EEEcC-CCEEEEEECC-------------CCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC------CeEEEEEcCCC
Confidence            97754 4667777653             3455655 47888 99999999999999999999      99999999653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.3e-30  Score=258.63  Aligned_cols=252  Identities=16%  Similarity=0.179  Sum_probs=205.6

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|++++|+|+++.+++++.||.|++|++..                       +.+.....+.+|. ..|.+++|
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-----------------------~~~~~~~~l~~h~-~~V~~l~~   61 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-----------------------ETHKLIDTLTGHE-GPVWRVDW   61 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-----------------------TEEEEEEEECCCS-SCEEEEEE
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-----------------------CCCccceeccCCc-CceEEEEe
Confidence            68999999999999999999999999999999872                       1234566788885 89999999


Q ss_pred             ccC--CCeEEEEeeCCCeEEEEEcCCCC---ceeeecCCCCeEEEEEecC--CCeEEEEecCCcEEEEECCCCce---ec
Q 013347          220 GPD--GRYLASASYESSSFTIWDVAQGL---GTPIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS---EP  289 (444)
Q Consensus       220 sp~--~~~l~~~~~d~~~i~iwd~~~~~---~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~v~iwd~~~~~~---~~  289 (444)
                      +|+  +++|++++.|| .|++||+.+++   ......|...|.+++|+|+  ++++++++.||.|++||++++..   ..
T Consensus        62 s~~~~~~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           62 AHPKFGTILASCSYDG-KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             CCTTSCSEEEEEETTS-CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             cCCCCCCEEEEEeCCC-eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence            988  99999999998 99999999885   2335568899999999999  99999999999999999998743   44


Q ss_pred             cccCCCceeEEEECC-------------CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE
Q 013347          290 WSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI  355 (444)
Q Consensus       290 ~~~~~~~v~~~~~sp-------------~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  355 (444)
                      +..|...|.+++|+|             ++.++++++ .++.+..|++.....         .......+.+|. .|.++
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~---------~~~~~~~~~~h~~~V~~l  210 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQ---------TYVLESTLEGHSDWVRDV  210 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTT---------EEEEEEEECCCSSCEEEE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcc---------cceeeeeecCCCCcEEEE
Confidence            568999999999999             478888665 457788888754210         124455677888 99999


Q ss_pred             EECCC---CCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          356 AWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       356 ~~spd---g~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      +|+|+   +++|++++.|      |.|++||+.+++...........+|...|++++|+|+|++     ++.+..+|.|+
T Consensus       211 ~~sp~~~~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~-----l~s~s~Dg~I~  279 (753)
T 3jro_A          211 AWSPTVLLRSYLASVSQD------RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-----LALSGGDNKVT  279 (753)
T ss_dssp             EECCCCSSSEEEEEEESS------SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCC-----EEEECSSSCEE
T ss_pred             EeccCCCCCCEEEEEecC------CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCE-----EEEEcCCCEEE
Confidence            99999   8999999998      9999999998643212222344568889999999999986     77888899999


Q ss_pred             eeeee
Q 013347          433 TYPLI  437 (444)
Q Consensus       433 ~~~~~  437 (444)
                      +|++.
T Consensus       280 vwd~~  284 (753)
T 3jro_A          280 LWKEN  284 (753)
T ss_dssp             CCBCC
T ss_pred             EEecC
Confidence            99986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=223.37  Aligned_cols=235  Identities=16%  Similarity=0.173  Sum_probs=188.8

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ..|.+++|+|++++|++++.||.+++|++....  +....+ .+|...|.+++|  +++.+++++.|+.|++||..    
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~----  132 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG----  132 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT----
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC----
Confidence            359999999999999999999999999998642  223333 589999999999  45788999999999999933    


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGG  255 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~  255 (444)
                                             .....+..|. ..+.+++|+| +++++++++.|+ .|++||.... ...+.. +...
T Consensus       133 -----------------------~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~-~~~~~~~~~~~  186 (313)
T 3odt_A          133 -----------------------SLVYNLQAHN-ASVWDAKVVSFSENKFLTASADK-TIKLWQNDKV-IKTFSGIHNDV  186 (313)
T ss_dssp             -----------------------EEEEEEECCS-SCEEEEEEEETTTTEEEEEETTS-CEEEEETTEE-EEEECSSCSSC
T ss_pred             -----------------------cEEEecccCC-CceeEEEEccCCCCEEEEEECCC-CEEEEecCce-EEEEeccCccc
Confidence                                   2344566675 8999999998 999999999998 9999994322 222333 7889


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +.+++|+|+++ +++++.|+.|++||+++++. ..+..|...+++++|+|++. ++++ +.++.+..|++.         
T Consensus       187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~-~~dg~v~iwd~~---------  254 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSC-GEDRTVRIWSKE---------  254 (313)
T ss_dssp             EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEE-ETTSEEEEECTT---------
T ss_pred             EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEE-ecCCEEEEEECC---------
Confidence            99999999998 99999999999999998887 45678999999999999995 5544 345666666643         


Q ss_pred             cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          335 LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                          +...+..+..|. .|.+++|+|+++ +++++.|      +.|++||+++++..
T Consensus       255 ----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~iw~~~~~~~~  300 (313)
T 3odt_A          255 ----NGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD------NLVRIFSQEKSRWA  300 (313)
T ss_dssp             ----TCCEEEEEECSSSCEEEEEECTTSC-EEEEETT------SCEEEEESCGGGCC
T ss_pred             ----CCceeEEEeccCceEEEEEEccCCC-EEEEeCC------CcEEEEeCCCCcee
Confidence                345566777777 899999999999 5567777      99999999986654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=5e-28  Score=219.89  Aligned_cols=237  Identities=18%  Similarity=0.306  Sum_probs=194.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|++++||+|+.||+|+||++.+ ++....+ .+|...+.++.+  ++..+++++.++.+++|+......   
T Consensus        69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~-~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~---  141 (318)
T 4ggc_A           69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-QKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH---  141 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEeecCC-ceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCce---
Confidence            599999999999999999999999999997 5555544 588888877654  445788888899999999873322   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-----eeecCCCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-----PIRRGFGG  255 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-----~~~~~~~~  255 (444)
                                           ....+.+|. ..+..+.+++++++|++++.|+ .|++||+++++..     ....+.+.
T Consensus       142 ---------------------~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~  198 (318)
T 4ggc_A          142 ---------------------HVATLSGHS-QEVCGLRWAPDGRHLASGGNDN-LVNVWPSAPGEGGWVPLQTFTQHQGA  198 (318)
T ss_dssp             ---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred             ---------------------eEEEEcCcc-CceEEEEEcCCCCEEEEEecCc-ceeEEECCCCcccccceeeecccCCc
Confidence                                 344566775 7999999999999999999998 9999999887532     24456788


Q ss_pred             eEEEEEecCCCeE---EEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEE-cCCceEEEEEeecCCCCc
Q 013347          256 LSILKWSPTGDYF---FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       256 v~~~~~sp~~~~l---~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~~~~~~~~~  331 (444)
                      |.+++++|++..+   ++++.++.|++||.+.........+...+..+.|+|+++.+++++ ..++.+..|++.      
T Consensus       199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~------  272 (318)
T 4ggc_A          199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP------  272 (318)
T ss_dssp             EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT------
T ss_pred             eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC------
Confidence            9999999976644   356678999999999988877777888899999999999888664 456677777653      


Q ss_pred             CCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          332 DAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                             +...+.++.+|. .|++++|+|||++|++++.|      ++|+|||+..
T Consensus       273 -------~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D------~~v~iWd~~~  315 (318)
T 4ggc_A          273 -------TMAKVAELKGHTSRVLSLTMSPDGATVASAAAD------ETLRLWRCFE  315 (318)
T ss_dssp             -------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------TEEEEECCSC
T ss_pred             -------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEECCC
Confidence                   456678889998 99999999999999999998      9999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=7.9e-29  Score=227.67  Aligned_cols=243  Identities=12%  Similarity=0.071  Sum_probs=195.1

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+|.+.|++++|+|++..+++++.|+.|++|++......                      .....+.+|. ..|.+++|
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~~~-~~v~~~~~   64 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------VDLLQSLRYK-HPLLCCNF   64 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------EEEEEEEECS-SCEEEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------ccceeeeecC-CceEEEEE
Confidence            589999999999999889999999999999999844311                      1122344564 89999999


Q ss_pred             ccCCC-eEEEEeeCCCeEEEEEc-CCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCC---------Cc
Q 013347          220 GPDGR-YLASASYESSSFTIWDV-AQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT---------WT  286 (444)
Q Consensus       220 sp~~~-~l~~~~~d~~~i~iwd~-~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~---------~~  286 (444)
                      +|+++ +|++++.|+ .|++||+ .+++...+..  |...|.+++|+| +++|++++.|+.|++||+++         ++
T Consensus        65 ~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  142 (342)
T 1yfq_A           65 IDNTDLQIYVGTVQG-EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EESSSEEEEEEETTS-CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             CCCCCcEEEEEcCCC-eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence            99999 999999998 9999999 8887777777  999999999999 99999999999999999987         66


Q ss_pred             eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec-CCCCcCCCcCCCCcccccccccCC-ceeEEEECC-CCCE
Q 013347          287 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA-SGER  363 (444)
Q Consensus       287 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp-dg~~  363 (444)
                      ......|...+.+++|+|++  ++++ ..++.+..|++.. .           ..........+. .|.+++|+| ++++
T Consensus       143 ~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~i~~i~~~~~~~~~  208 (342)
T 1yfq_A          143 NSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCE-----------DDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCT-----------TCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             eeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccc-----------cccceeeecCCCCceeEEEECCCCCCE
Confidence            54444588999999999988  5545 4446777777542 1           111112223444 899999999 9999


Q ss_pred             EEEEecCCCccccceEEEEEcCCC------CeEEEEEeeeeeCCCC---------CCcceeeeeCCCCCCCceEEEEecc
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRT------PLISLSLIGFIRGPGD---------NPKPVAFSFHDKFKQGPLLSVCWSS  428 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~---------~i~~v~~spdg~~~~~~~l~~~~~~  428 (444)
                      |++++.+      |.|++|+++..      +..     ..+.+|..         .|.+++|+|++++     |+.+..+
T Consensus       209 l~~~~~d------g~i~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-----l~~~~~d  272 (342)
T 1yfq_A          209 YACSSID------GRVAVEFFDDQGDDYNSSKR-----FAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSD  272 (342)
T ss_dssp             EEEEETT------SEEEEEECCTTCCSTTCTTC-----EEEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETT
T ss_pred             EEEEecC------CcEEEEEEcCCCcccccccc-----eeeecccccccccccceeEEEEEEcCCCCE-----EEEecCC
Confidence            9999998      99999999875      332     45566654         8999999999886     7888899


Q ss_pred             ceeeeeeee
Q 013347          429 GFCCTYPLI  437 (444)
Q Consensus       429 g~i~~~~~~  437 (444)
                      |.|.+|++.
T Consensus       273 g~i~vwd~~  281 (342)
T 1yfq_A          273 GIISCWNLQ  281 (342)
T ss_dssp             SCEEEEETT
T ss_pred             ceEEEEcCc
Confidence            999999875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=239.37  Aligned_cols=254  Identities=10%  Similarity=0.127  Sum_probs=190.7

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC----------
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----------  210 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  210 (444)
                      .+.+.|++++|+|++..|++++.||.|+||++.........              ....+.+...+.+|.          
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------~~~~~~~~~~~~~h~~~~~~~~~~~   91 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH--------------SRGEYNVYSTFQSHEPEFDYLKSLE   91 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC--------------CCCCEEEEEEEECCCCEEEGGGTEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------cccceeEeccccccccccccccccc
Confidence            46789999999999989999999999999999854321111              112345667788874          


Q ss_pred             -CCceEEEEEccCC--CeEEEEeeCCCeEEEEEcCCCCce----------------------------------------
Q 013347          211 -GEQITALSWGPDG--RYLASASYESSSFTIWDVAQGLGT----------------------------------------  247 (444)
Q Consensus       211 -~~~v~~~~~sp~~--~~l~~~~~d~~~i~iwd~~~~~~~----------------------------------------  247 (444)
                       ...|.+++|+|++  ..|++++.|+ +|++||+.++...                                        
T Consensus        92 ~~~~V~~l~~~~~~~~~~l~s~s~d~-~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (447)
T 3dw8_B           92 IEEKINKIRWLPQKNAAQFLLSTNDK-TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR  170 (447)
T ss_dssp             ECCCCCEEEECCCCSSSEEEEEECSS-CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCcceEEEeCCCC-eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence             2679999999998  7899999998 9999999764321                                        


Q ss_pred             e-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCc-ee--------ccccCCCceeEEEECCCC-CEEEEEEcCC
Q 013347          248 P-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SE--------PWSSTSGFVTGATWDPEG-RMILLAFAGS  316 (444)
Q Consensus       248 ~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~-~~--------~~~~~~~~v~~~~~sp~g-~~l~~~~~~~  316 (444)
                      . ...|...|.+++|+|++++|+++ .|+.|++||+++.. ..        .+..|...|++++|+|++ +++++++ .+
T Consensus       171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~d  248 (447)
T 3dw8_B          171 IFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SK  248 (447)
T ss_dssp             EECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TT
T ss_pred             EeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CC
Confidence            1 24578899999999999999998 79999999999433 32        356899999999999999 7777664 45


Q ss_pred             ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-------------ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-------------GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      +.+..|++.....         ....+..+.+|.             .|.+++|+|+|++|++++.       +.|++||
T Consensus       249 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~v~iwd  312 (447)
T 3dw8_B          249 GTIRLCDMRASAL---------CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-------LSVKVWD  312 (447)
T ss_dssp             SCEEEEETTTCSS---------SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-------SEEEEEE
T ss_pred             CeEEEEECcCCcc---------ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-------CeEEEEe
Confidence            6777777643210         001123344433             7999999999999998865       6899999


Q ss_pred             cCC-CCeEEEEEeeeeeCCCCC---------------CcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          384 ARR-TPLISLSLIGFIRGPGDN---------------PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       384 ~~~-~~~~~~~~~~~~~~~~~~---------------i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ++. ++.+     ..+.+|...               +..++|+|+|++     |+.+..+|.|++|++.
T Consensus       313 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-----l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          313 LNMENRPV-----ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-----VMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             TTCCSSCS-----CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-----EEEECSTTEEEEEETT
T ss_pred             CCCCcccc-----ceeeccccccccccccccccccccceEEEECCCCCE-----EEEeccCCEEEEEEcC
Confidence            986 5443     566777532               224899999886     7888899999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.6e-29  Score=235.41  Aligned_cols=297  Identities=9%  Similarity=0.054  Sum_probs=192.2

Q ss_pred             ceEEEEEe---cCCCeEEEEECCCeEEEEEccCCCCc-------eeEEecCCCCCeEEEEEe------------------
Q 013347          101 DLQGVSWH---QHKHIVAFISGSTQVIVRDYEDSGKD-------ACILTSDSQRDVKVLEWR------------------  152 (444)
Q Consensus       101 ~v~~~~~s---p~g~~la~~~~dg~v~iw~~~~~~~~-------~~~~~~~~~~~v~~l~~s------------------  152 (444)
                      ...++.|.   |++..++.++.++.|.+|+.......       .......+...+..+.|+                  
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            45667774   44444555556888999987543110       111112344445555544                  


Q ss_pred             --eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--------C
Q 013347          153 --PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--------D  222 (444)
Q Consensus       153 --~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------~  222 (444)
                        +++..+++++.|++|+|||++.......                    .....+.+|. ..|.+++|+|        |
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------------------~~~~~~~gH~-~~v~~v~~~p~~~~~~~~d  155 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQ--------------------HVLGGKSGHH-NFVNDIDIADVYSADNRLA  155 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEE--------------------EEECTTTSCS-SCEEEEEEEEEECTTCSEE
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCcccee--------------------eeecccCCCC-CceEEEEEccccccccCCC
Confidence              3434567777899999999874322111                    1233467886 8999999998        8


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCc-eeeecCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCCceec-----------
Q 013347          223 GRYLASASYESSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEP-----------  289 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~~~~~-----------  289 (444)
                      +++|++++.|+ +|+|||+.++.. .....|...+.+++|+|++. +|++++.|++|++||+++++...           
T Consensus       156 ~~~las~s~D~-tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          156 EQVIASVGDDC-TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEETTS-EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCEEEEEECCC-eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            99999999998 999999987654 45778899999999999874 78999999999999998765311           


Q ss_pred             ---------------cccCCCceeEEEEC-CCCCEEEEEEcCCceEEEEEeecCCCC--cCCCc---CCCC-cccccccc
Q 013347          290 ---------------WSSTSGFVTGATWD-PEGRMILLAFAGSLTLGSIHFASKPPS--LDAHL---LPVD-LPDIVSLT  347 (444)
Q Consensus       290 ---------------~~~~~~~v~~~~~s-p~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~-~~~~~~~~  347 (444)
                                     ..+|...+.++.|+ |+++.++++ ..++.+..|++......  +..+.   .... ....+...
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  313 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS  313 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-CTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEE-eCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence                           12566778899986 799988865 55577777776432110  00000   0000 01111222


Q ss_pred             cCCceeEEEECC--CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEE
Q 013347          348 GSQGIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  425 (444)
Q Consensus       348 ~~~~v~~~~~sp--dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~  425 (444)
                      .+.......|+|  ++.++++++.|      ++|++||+.+++..     ....+|...|++++|||||++     |+++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~sgs~D------g~V~lwd~~~~~~~-----~~~~~~~~~V~svafspdG~~-----LA~a  377 (393)
T 4gq1_A          314 LFPSLLGACPHPRYMDYFATAHSQH------GLIQLINTYEKDSN-----SIPIQLGMPIVDFCWHQDGSH-----LAIA  377 (393)
T ss_dssp             SSCCSSCCEECSSCTTEEEEEETTT------TEEEEEETTCTTCC-----EEEEECSSCEEEEEECTTSSE-----EEEE
T ss_pred             ccCcceeEEEccCCCCEEEEEECCC------CEEEEEECCCCcEE-----EEecCCCCcEEEEEEcCCCCE-----EEEE
Confidence            222223334444  34456666667      99999999988765     345567889999999999987     7888


Q ss_pred             eccceeeeeeee
Q 013347          426 WSSGFCCTYPLI  437 (444)
Q Consensus       426 ~~~g~i~~~~~~  437 (444)
                      .++| +.++.|.
T Consensus       378 s~~G-v~lvrL~  388 (393)
T 4gq1_A          378 TEGS-VLLTRLM  388 (393)
T ss_dssp             ESSE-EEEEEEG
T ss_pred             eCCC-eEEEEEe
Confidence            6655 5556554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2e-27  Score=222.70  Aligned_cols=240  Identities=12%  Similarity=0.080  Sum_probs=189.2

Q ss_pred             ceEEEEEecCCCeE-EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      .+.+++|+|+|++| ++++.|+.|++||+.+ ++....+.  +...+.+++|+|+++.+++++. ++.|++||+...+  
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--  107 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--  107 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe--
Confidence            48999999999987 5666899999999987 44444443  3348999999999888877765 5999999998332  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                                             ....+..+  ..+.+++|+|+++.| ++++.++ .|++||+.+++..........+.
T Consensus       108 -----------------------~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~~~  161 (391)
T 1l0q_A          108 -----------------------VAGTVKTG--KSPLGLALSPDGKKLYVTNNGDK-TVSVINTVTKAVINTVSVGRSPK  161 (391)
T ss_dssp             -----------------------EEEEEECS--SSEEEEEECTTSSEEEEEETTTT-EEEEEETTTTEEEEEEECCSSEE
T ss_pred             -----------------------EEEEEeCC--CCcceEEECCCCCEEEEEeCCCC-EEEEEECCCCcEEEEEecCCCcc
Confidence                                   22333433  578999999999988 5666676 99999999988777666667889


Q ss_pred             EEEEecCCCeE-EEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEc--CCceEEEEEeecCCCCcCCC
Q 013347          258 ILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       258 ~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +++|+|+++++ ++++.++.|++||+++++......+...+.+++|+|++++++++..  .++.+..|++.         
T Consensus       162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~---------  232 (391)
T 1l0q_A          162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG---------  232 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT---------
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC---------
Confidence            99999999988 6777889999999999887666667778999999999999998765  45666666642         


Q ss_pred             cCCCCcccccccccCCceeEEEECCCCCEEEE-EecCCCccccceEEEEEcCCCCeE
Q 013347          335 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                          ....+..+..+..+.+++|+|+|++|++ ++.+      +.|++||+.+++..
T Consensus       233 ----~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          233 ----TNKITARIPVGPDPAGIAVTPDGKKVYVALSFX------NTVSVIDTATNTIT  279 (391)
T ss_dssp             ----TTEEEEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEE
T ss_pred             ----CCeEEEEEecCCCccEEEEccCCCEEEEEcCCC------CEEEEEECCCCcEE
Confidence                2344556666667889999999998854 4555      99999999998766

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=226.27  Aligned_cols=254  Identities=8%  Similarity=0.015  Sum_probs=192.7

Q ss_pred             cceEEEEEecCCCeE-EEEECCCeEEEEEcc--CCCCceeEEe-cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347          100 VDLQGVSWHQHKHIV-AFISGSTQVIVRDYE--DSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       100 ~~v~~~~~sp~g~~l-a~~~~dg~v~iw~~~--~~~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      ..|++++|+|++++| ++++.||.|+||++.  . +.....+. ..|...|.+++|+|++..+++++.++.|++|++...
T Consensus       103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~  181 (450)
T 2vdu_B          103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSI  181 (450)
T ss_dssp             CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC
T ss_pred             CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-CceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc
Confidence            369999999999996 888899999999998  5 44444432 367889999999999989999999999999999744


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC---CCeEEEEeeCCCeEEEEEcCCCCceee--e
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRYLASASYESSSFTIWDVAQGLGTPI--R  250 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~d~~~i~iwd~~~~~~~~~--~  250 (444)
                      .....                     ....+.+|. ..|.+++|+|+   +++|++++.|+ .|++||+.+++....  .
T Consensus       182 ~~~~~---------------------~~~~~~~h~-~~v~~~~~sp~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~  238 (450)
T 2vdu_B          182 PEEKF---------------------TQEPILGHV-SMLTDVHLIKDSDGHQFIITSDRDE-HIKISHYPQCFIVDKWLF  238 (450)
T ss_dssp             CCSSC---------------------CCCCSEECS-SCEEEEEEEECTTSCEEEEEEETTS-CEEEEEESCTTCEEEECC
T ss_pred             ccccc---------------------cceeeeccc-CceEEEEEcCCCCCCcEEEEEcCCC-cEEEEECCCCceeeeeec
Confidence            33210                     011345564 79999999999   99999999998 999999998876653  3


Q ss_pred             cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-------------------------cCCCceeEEEECC
Q 013347          251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-------------------------STSGFVTGATWDP  304 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-------------------------~~~~~v~~~~~sp  304 (444)
                      .|...|.+++|+ ++++|++++.|+.|++||+++++... +.                         .....+.+++|+|
T Consensus       239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            688999999999 99999999999999999999988632 22                         2235689999999


Q ss_pred             CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      +++++++++..++.+..|++.+..        ......+..+..+..|.+++|+|++.++++++.+.....++.|.+|.+
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~--------~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~  389 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQ--------KGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY  389 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSS--------TTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCC--------CCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence            999999888677888888872110        002245566667778999999996544433333211001256888876


Q ss_pred             CC
Q 013347          385 RR  386 (444)
Q Consensus       385 ~~  386 (444)
                      ..
T Consensus       390 ~~  391 (450)
T 2vdu_B          390 NL  391 (450)
T ss_dssp             ET
T ss_pred             Ec
Confidence            53

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=8.1e-28  Score=226.64  Aligned_cols=280  Identities=13%  Similarity=0.075  Sum_probs=207.9

Q ss_pred             cceEEEEEecCCC-eEEEEE----CCC----eEEEEEc--cCCCCce-eEEecCCCCCeEEEEEee--------------
Q 013347          100 VDLQGVSWHQHKH-IVAFIS----GST----QVIVRDY--EDSGKDA-CILTSDSQRDVKVLEWRP--------------  153 (444)
Q Consensus       100 ~~v~~~~~sp~g~-~la~~~----~dg----~v~iw~~--~~~~~~~-~~~~~~~~~~v~~l~~s~--------------  153 (444)
                      ..+...+|++.|. .+++|+    .+|    .++|||+  .+ ++.. .....+|...+..+++++              
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3577788988885 555775    467    8999999  76 4433 222357877788777765              


Q ss_pred             CCCeEEEEecC------CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347          154 NGGRSLSVGCK------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA  227 (444)
Q Consensus       154 ~~~~ll~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  227 (444)
                      .+.++++++.+      +.|++||++. +..                         ..+.+|. ..+.+++|+|||++|+
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~-------------------------~~l~~~~-~~v~~~~~Spdg~~la  194 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQ-------------------------FVVHRSP-QPLMSPAWSPDGSKLA  194 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTS-CSC-------------------------EEEEEES-SCEEEEEECTTSSEEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCC-CCC-------------------------EEEeCCC-CcceeeEEcCCCCEEE
Confidence            14677777764      6999999972 221                         2234453 7899999999999999


Q ss_pred             EEeeCC--CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCC--cEEEEECCCCceeccccCCCceeEEEE
Q 013347          228 SASYES--SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSSTSGFVTGATW  302 (444)
Q Consensus       228 ~~~~d~--~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~  302 (444)
                      +++.++  ..|++||+.+++...+..+...+.+++|+|||++|+ +++.++  .|++||+.+++...+..|...+.+++|
T Consensus       195 ~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          195 YVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTW  274 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEE
T ss_pred             EEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEE
Confidence            998773  389999999998888888888999999999999887 666655  499999999988888888889999999


Q ss_pred             CCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          303 DPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       303 sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      +|+|++|++++..++  .++.+++.              ......+..+. .+.+++|+|||++|++++.+..   +..|
T Consensus       275 spdg~~l~~~s~~~g~~~i~~~d~~--------------~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g---~~~i  337 (415)
T 2hqs_A          275 FPDSQNLAFTSDQAGRPQVYKVNIN--------------GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG---QQHI  337 (415)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETT--------------SSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS---CEEE
T ss_pred             CCCCCEEEEEECCCCCcEEEEEECC--------------CCCEEEEecCCCcccCeEECCCCCEEEEEECcCC---ceEE
Confidence            999999998775444  45555532              12233344444 7889999999999998886521   1689


Q ss_pred             EEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec-cc--eeeeeee
Q 013347          380 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS-SG--FCCTYPL  436 (444)
Q Consensus       380 ~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~-~g--~i~~~~~  436 (444)
                      ++||+.+++..      .+..+. .+.+++|+|||++     |+.+.. +|  .|+.|++
T Consensus       338 ~~~d~~~~~~~------~l~~~~-~~~~~~~spdg~~-----l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          338 AKQDLATGGVQ------VLSSTF-LDETPSLAPNGTM-----VIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEETTTCCEE------ECCCSS-SCEEEEECTTSSE-----EEEEEEETTEEEEEEEET
T ss_pred             EEEECCCCCEE------EecCCC-CcCCeEEcCCCCE-----EEEEEcCCCccEEEEEEC
Confidence            99999987753      234443 7889999999986     444434 44  6776664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=223.96  Aligned_cols=285  Identities=13%  Similarity=0.121  Sum_probs=202.0

Q ss_pred             CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCC
Q 013347          119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG  197 (444)
Q Consensus       119 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (444)
                      .++.+++|+++. .+....+ .+|.+.|++++|+| +++.+++++.||.|++|++............             
T Consensus        21 ~~~~~~v~~~~~-~~~~~~~-~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------------   85 (408)
T 4a11_B           21 AESTRRVLGLEL-NKDRDVE-RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK-------------   85 (408)
T ss_dssp             HHHHHHHHTEEE-CTTEEEC-CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC-------------
T ss_pred             ccCcceeecccc-Ccceeee-eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc-------------
Confidence            345677888876 3444443 58999999999999 9888889999999999999865544333211             


Q ss_pred             CceEEEEE-----eeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecC---CCeE
Q 013347          198 TRWTLVDF-----LRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPT---GDYF  268 (444)
Q Consensus       198 ~~~~~~~~-----~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~---~~~l  268 (444)
                          ....     ..+| ...|.+++|+| ++++|++++.|+ .|++||+.+++......+...+.+++|+|.   +.++
T Consensus        86 ----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B           86 ----AVCSIGRDHPDVH-RYSVETVQWYPHDTGMFTSSSFDK-TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             ----EEEEECTTCTTCC-SSCEEEEEECTTCTTCEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEE
T ss_pred             ----ccccccccccccC-CCcEEEEEEccCCCcEEEEEeCCC-eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEE
Confidence                0000     1235 48999999999 788999999998 999999999988887788899999999985   4589


Q ss_pred             EEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC---CCcCCCCccccc
Q 013347          269 FAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD---AHLLPVDLPDIV  344 (444)
Q Consensus       269 ~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  344 (444)
                      ++++.|+.|++||+++++. ..+..|...|.+++|+|++++++++++.++.+..|++........   ............
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  239 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES  239 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence            9999999999999998876 556789999999999999996444555667788887654321110   000001112223


Q ss_pred             ccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC--CCCCcceeeeeCCCCCCCce
Q 013347          345 SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPL  421 (444)
Q Consensus       345 ~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~i~~v~~spdg~~~~~~~  421 (444)
                      ....|. .|.+++|+|++++|++++.|      +.|++||+.+++...     .+.++  ......+.+....  .....
T Consensus       240 ~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~  306 (408)
T 4a11_B          240 ANTAHNGKVNGLCFTSDGLHLLTVGTD------NRMRLWNSSNGENTL-----VNYGKVCNNSKKGLKFTVSC--GCSSE  306 (408)
T ss_dssp             SSCSCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCBCC-----CCCCCCCCCCSSCCCCEECC--SSSSC
T ss_pred             ccccccCceeEEEEcCCCCEEEEecCC------CeEEEEECCCCccce-----eccccccccccccceeEEec--CCCce
Confidence            335666 89999999999999999998      999999999876541     11111  1111222222111  11223


Q ss_pred             EEEEeccceeeeeeee
Q 013347          422 LSVCWSSGFCCTYPLI  437 (444)
Q Consensus       422 l~~~~~~g~i~~~~~~  437 (444)
                      +.++..+|.|.+|++.
T Consensus       307 ~~~~~~~~~i~v~d~~  322 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVY  322 (408)
T ss_dssp             EEEEEETTEEEEEETT
T ss_pred             EEEEecCCEEEEEECc
Confidence            5566678999998864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=7.4e-28  Score=225.57  Aligned_cols=237  Identities=13%  Similarity=0.073  Sum_probs=162.7

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee---EEecCCCCCeEEEEEee--------CCCeEEEEecCCcEEEE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRP--------NGGRSLSVGCKGGICIW  170 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~v~~l~~s~--------~~~~ll~~~~dg~v~iw  170 (444)
                      +....+++++.+||+++.|++|+|||.........   ....+|.+.|++++|+|        |++.|++++.|++|+||
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            44556677888999999999999999987321111   12358999999999998        76778888899999999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCCCCcee-
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQGLGTP-  248 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~~~~~~-  248 (444)
                      |+...+                         ....+..|+ ..|.+++|+|++. +|++++.|+ +|++||+++++... 
T Consensus       172 d~~~~~-------------------------~~~~~~~~~-~~v~~v~~~p~~~~~l~~~~~d~-~v~~wd~~t~~~~~~  224 (393)
T 4gq1_A          172 RLTDEG-------------------------PILAGYPLS-SPGISVQFRPSNPNQLIVGERNG-NIRIFDWTLNLSAEE  224 (393)
T ss_dssp             EEETTE-------------------------EEEEEEECS-SCEEEEEEETTEEEEEEEEETTS-EEEEEETTCCC----
T ss_pred             ECCCCc-------------------------eeeeecCCC-CCcEEEEECCCCCceEEecCCCC-EEEEEECCCCccccc
Confidence            997322                         233345554 7899999999875 799999998 99999998764321 


Q ss_pred             -------------------------eecCCCCeEEEEEe-cCCCeEEEEecCCcEEEEECCCCce-eccccCCCcee---
Q 013347          249 -------------------------IRRGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT---  298 (444)
Q Consensus       249 -------------------------~~~~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~---  298 (444)
                                               ...|...+.+++|+ |+++.|++++.|+++++||+.+++. ..+..|...+.   
T Consensus       225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~  304 (393)
T 4gq1_A          225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN  304 (393)
T ss_dssp             ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred             ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence                                     12345678889987 7999999999999999999987654 22333332222   


Q ss_pred             ----------------EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCC
Q 013347          299 ----------------GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASG  361 (444)
Q Consensus       299 ----------------~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg  361 (444)
                                      .+.+.+.+..++++++.++.++.|++.             ....+..+.+|. +|.+++|+|||
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~-------------~~~~~~~~~~~~~~V~svafspdG  371 (393)
T 4gq1_A          305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTY-------------EKDSNSIPIQLGMPIVDFCWHQDG  371 (393)
T ss_dssp             CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETT-------------CTTCCEEEEECSSCEEEEEECTTS
T ss_pred             EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECC-------------CCcEEEEecCCCCcEEEEEEcCCC
Confidence                            222333455666677777888777753             233344455555 99999999999


Q ss_pred             CEEEEEecCCCccccceEEEEEcC
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ++||+++.+       .+.+|.+.
T Consensus       372 ~~LA~as~~-------Gv~lvrL~  388 (393)
T 4gq1_A          372 SHLAIATEG-------SVLLTRLM  388 (393)
T ss_dssp             SEEEEEESS-------EEEEEEEG
T ss_pred             CEEEEEeCC-------CeEEEEEe
Confidence            999999875       46666654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=7.3e-27  Score=222.07  Aligned_cols=242  Identities=15%  Similarity=0.238  Sum_probs=188.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|.+++|  ++++|++|+.||.|++||+.+ ++....+ .+|...|.+++|++  +.+++++.||.|++||+...... 
T Consensus       174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-  246 (435)
T 1p22_A          174 GSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI-  246 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC-
T ss_pred             CcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc-
Confidence            36899988  889999999999999999997 5555444 58999999999974  58889999999999999844322 


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~  258 (444)
                                           .....+.+|. ..|.+++|  +++++++++.|+ .|++||+++++... +..|...+.+
T Consensus       247 ---------------------~~~~~~~~~~-~~v~~~~~--~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~  301 (435)
T 1p22_A          247 ---------------------TLRRVLVGHR-AAVNVVDF--DDKYIVSASGDR-TIKVWNTSTCEFVRTLNGHKRGIAC  301 (435)
T ss_dssp             ---------------------EEEEEECCCS-SCEEEEEE--ETTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             ---------------------eeeeEecCCC-CcEEEEEe--CCCEEEEEeCCC-eEEEEECCcCcEEEEEcCCCCcEEE
Confidence                                 1224456675 89999999  788999999998 99999999987765 5568899999


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ++|+  ++++++|+.||.|++||+++++. ..+.+|...|.+++|  ++.++++++ .++.+..|++.......    ..
T Consensus       302 ~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~----~~  372 (435)
T 1p22_A          302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPR----AP  372 (435)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTT----SC
T ss_pred             EEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcc----cc
Confidence            9984  78999999999999999999887 557789999999999  677888664 45778888875421100    00


Q ss_pred             CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .....+..+.+|. .|.+++|  ++++|++++.|      |+|++||+.+....
T Consensus       373 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D------g~i~iwd~~~~~~~  418 (435)
T 1p22_A          373 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD------DTILIWDFLNDPAA  418 (435)
T ss_dssp             TTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS------SEEEEEC-------
T ss_pred             ccchheeeccCCCCCeEEEEe--CCCEEEEEeCC------CEEEEEECCCCCCc
Confidence            0112466777888 8999999  78899999988      99999999875543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.2e-26  Score=218.69  Aligned_cols=253  Identities=15%  Similarity=0.185  Sum_probs=192.1

Q ss_pred             CCeEEEEECC------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC---cEEEEecCCCCCccee
Q 013347          111 KHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYPGNAASV  181 (444)
Q Consensus       111 g~~la~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg---~v~iw~~~~~~~~~~~  181 (444)
                      +..+++++.+      +.|++||++.  .....+ .+|...|.+++|+|||+.+++++.++   .|++||+.+.+.    
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g--~~~~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----  215 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDG--YNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----  215 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTS--CSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCC--CCCEEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----
Confidence            6677776654      7999999974  333444 37888999999999999898888774   999999984321    


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEeeCC-CeEEEEEcCCCCceeeecCCCCeEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYES-SSFTIWDVAQGLGTPIRRGFGGLSIL  259 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~-~~i~iwd~~~~~~~~~~~~~~~v~~~  259 (444)
                                            ..+..+. ..+.+++|+|||+.|+ +++.++ ..|++||+.+++...+..+...+.++
T Consensus       216 ----------------------~~l~~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~  272 (415)
T 2hqs_A          216 ----------------------RQVASFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEP  272 (415)
T ss_dssp             ----------------------EEEECCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEE
T ss_pred             ----------------------EEeecCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccce
Confidence                                  1233443 6899999999999888 445443 25999999998887777888899999


Q ss_pred             EEecCCCeEEEEec-CC--cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC--ceEEEEEeecCCCCcCCC
Q 013347          260 KWSPTGDYFFAAKF-DG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       260 ~~sp~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~~~~~~~~~~~~  334 (444)
                      +|+|||++|++++. ++  .|++||+.+++...+..+...+.+++|+|+|++|+++...+  ..++.|++.         
T Consensus       273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~---------  343 (415)
T 2hqs_A          273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA---------  343 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT---------
T ss_pred             EECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC---------
Confidence            99999999988776 44  68888999888766667778899999999999999876543  345555532         


Q ss_pred             cCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          335 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                           ......+..+..+.+++|+|||++|++++.++..   ..|++||+..+..      ..+.+|...|.+++|||--
T Consensus       344 -----~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~---~~l~~~d~~g~~~------~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          344 -----TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFK------ARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             -----TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTE---EEEEEEETTSCCE------EECCCSSSEEEEEEECCCC
T ss_pred             -----CCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCc---cEEEEEECCCCcE------EEeeCCCCCCcCCcccccc
Confidence                 1222344444478999999999999998877311   2899999986543      3577888899999999965


Q ss_pred             CC
Q 013347          415 KF  416 (444)
Q Consensus       415 ~~  416 (444)
                      .+
T Consensus       410 ~~  411 (415)
T 2hqs_A          410 HH  411 (415)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.2e-26  Score=218.52  Aligned_cols=237  Identities=11%  Similarity=0.026  Sum_probs=191.2

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~  179 (444)
                      .|.+++|+|+++++++++.|+.|++||+.+ ++....+ ..|...+.+++|+|+++.+++++ .++.|++||+....   
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---  245 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---  245 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---
Confidence            699999999999999999999999999987 4444444 37888999999999988887766 57999999997332   


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--------CCCeEEEEEcCCCCceeeec
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--------ESSSFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------d~~~i~iwd~~~~~~~~~~~  251 (444)
                                            ....+..+  ..+.+++|+|+++++++++.        |+ .|++||+.+++......
T Consensus       246 ----------------------~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg-~i~~~d~~~~~~~~~~~  300 (433)
T 3bws_A          246 ----------------------EIRKTDKI--GLPRGLLLSKDGKELYIAQFSASNQESGGG-RLGIYSMDKEKLIDTIG  300 (433)
T ss_dssp             ----------------------EEEECCCC--SEEEEEEECTTSSEEEEEEEESCTTCSCCE-EEEEEETTTTEEEEEEE
T ss_pred             ----------------------EEEEecCC--CCceEEEEcCCCCEEEEEECCCCccccCCC-eEEEEECCCCcEEeecc
Confidence                                  22333333  46999999999999999884        66 99999999987777777


Q ss_pred             CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC--------------
Q 013347          252 GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------------  316 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--------------  316 (444)
                      +...+.+++|+|+++.+ ++++.++.|++||+.+++......+...+.+++|+|+|++++++....              
T Consensus       301 ~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d  380 (433)
T 3bws_A          301 PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL  380 (433)
T ss_dssp             EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC
T ss_pred             CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc
Confidence            77789999999999866 666889999999999888765556778899999999999988876543              


Q ss_pred             ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec-CCCccccceEEEEEcCC
Q 013347          317 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK-GGDDIYKGLIAIYDARR  386 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-d~~~~~d~~i~vwd~~~  386 (444)
                      +.++.|++.             +...+..+..+..+.+++|+|+|++|++++. +      +.|++|+++.
T Consensus       381 g~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d------~~i~v~~~~~  432 (433)
T 3bws_A          381 GKVYVIDTT-------------TDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD------HQIRVYRRDG  432 (433)
T ss_dssp             CEEEEEETT-------------TTEEEEEEECSSSEEEEEECTTSCEEEEEETTT------TEEEEEEETT
T ss_pred             eEEEEEECC-------------CCcEEEEecCCCCCceEEEcCCCCEEEEEECCC------CeEEEEEecC
Confidence            356665542             2344455555558999999999999998876 5      9999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-26  Score=210.93  Aligned_cols=236  Identities=11%  Similarity=0.039  Sum_probs=176.3

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCC--------CCceeEEecCCCCCeEEEEEee--CCCeEEEEecCCcEEE
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICI  169 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~--------~~~~~~~~~~~~~~v~~l~~s~--~~~~ll~~~~dg~v~i  169 (444)
                      ..|.++.|+|+   +++++.|++|++|+....        +........+|.+.|.+++|+|  ++..+++++.|++|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45778888888   899999999999977621        2223344457788999999999  9888999999999999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--  247 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--  247 (444)
                      ||++....                         ......++...+.+++|+|++++|++|+.|+ .|++||+++++..  
T Consensus       154 wd~~~~~~-------------------------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-~i~iwd~~~~~~~~~  207 (343)
T 3lrv_A          154 QSYEDDSQ-------------------------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-ILDVYNLSSPDQASS  207 (343)
T ss_dssp             EESSSSCE-------------------------EEEECCCSSCCCCEEEECTTSCEEEEECTTS-CEEEEESSCTTSCCE
T ss_pred             EECCCCcE-------------------------EEEEecCCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCCCCCcc
Confidence            99984322                         2223334446799999999999999999998 9999999998876  


Q ss_pred             eeec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccc---cCCCcee--EEEECCCCCEEEEEEcCCceEE
Q 013347          248 PIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS---STSGFVT--GATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       248 ~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~---~~~~~v~--~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      .+.. |.+.|.+++|+|++++|++++ ++.|++||+++++.. .+.   .|...+.  +++|+|+|++|++++.+++.+.
T Consensus       208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~  286 (343)
T 3lrv_A          208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLT  286 (343)
T ss_dssp             ECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEE
Confidence            4555 789999999999999999999 559999999987652 222   2334444  6999999999998876567788


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC---CCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA---SGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      .|++.....               .+.. .++..+.|++   +++.|++++.|      +.++++-....
T Consensus       287 v~~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~l~~~~~d------~~~~~~~~~~~  334 (343)
T 3lrv_A          287 IYKFDKKTK---------------NWTK-DEESALCLQSDTADFTDMDVVCGD------GGIAAILKTND  334 (343)
T ss_dssp             EEEECTTTC---------------SEEE-EEEEECCC----CCCCEEEEEEET------TEEEEEEECSS
T ss_pred             EEEEccccc---------------ceEe-cCceeEecCccccccceeEEEecC------CceEEEEecCC
Confidence            887633210               0000 2567788888   88999999988      88888865543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=8e-26  Score=200.21  Aligned_cols=281  Identities=13%  Similarity=0.066  Sum_probs=182.1

Q ss_pred             ceEEEEEecCCC---eEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecC
Q 013347          101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~g~---~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~  173 (444)
                      ++.++-|-.-|-   .+++++ ...|++|+..+..  +..... ++|..+|..+.+.||...|+.+.-.  ..-.++.+.
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla  118 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF  118 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEE-eccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence            577777766543   555554 6789999999831  223333 6899999999999997777766542  111222222


Q ss_pred             CCCCcceeeccccccccccccCCCC-ceEEEEEeeccCCCceEEEEEccCCCeEEEEe--eCCCeEEEEEcCC-CCcee-
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGT-RWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YESSSFTIWDVAQ-GLGTP-  248 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~~i~iwd~~~-~~~~~-  248 (444)
                                          .++++ .+.....-.+|. ..|.++   ++++++.+++  .|+ .|++|++.. ++... 
T Consensus       119 --------------------~spd~~~~~~~l~s~g~~-~~v~~l---~~g~lv~ss~~g~d~-~V~~~~~s~dG~~~~s  173 (356)
T 2w18_A          119 --------------------CSSDDESEKQVLLKSGNI-KAVLGL---TKRRLVSSSGTLSDQ-QVEVMTFAEDGGGKEN  173 (356)
T ss_dssp             --------------------C------CCEEEEEEEEE-EEEEEE---TTTEEEEEESSSTTC-EEEEEEECTTSCEEEE
T ss_pred             --------------------ECCCccccccEEEeCCCe-EEEEec---CCCcEEEecccCCCC-cEEEEEECCCCceeee
Confidence                                22220 011111112232 445544   5666666643  477 999999954 54433 


Q ss_pred             eecCCCCeEEEEEec---CCCeEEEEecCCcEEEEECCCCce-eccccCC---CceeEEEECCCCCEEEEEEcC------
Q 013347          249 IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS---GFVTGATWDPEGRMILLAFAG------  315 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp---~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~---~~v~~~~~sp~g~~l~~~~~~------  315 (444)
                      +..|...+..++|+|   ++..|++++.|++|+|||+++++. ..+.+|.   ..+.+++|+|+|++++++...      
T Consensus       174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l  253 (356)
T 2w18_A          174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE  253 (356)
T ss_dssp             EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred             eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence            567888889999999   789999999999999999999987 4555443   357778999999988653311      


Q ss_pred             --CceEEEEEeecCCCCcCCCcCCCCccccccc-----ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          316 --SLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-----TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       316 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                        ...+..+++|+..          +...+..+     .+|. .+.+..+  ++.++|+++.|      ++|+|||+.++
T Consensus       254 aSGs~D~tIklWd~~----------tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~D------gTIkIWDl~tG  315 (356)
T 2w18_A          254 SLRSPVFQLIVINPK----------TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTS------GTIAIWDLLLG  315 (356)
T ss_dssp             ----CCEEEEEEETT----------TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETT------SCEEEEETTTC
T ss_pred             eccCCCcEEEEEECC----------CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCC------CcEEEEECCCC
Confidence              1234555555432          22222221     2443 3333333  37789999988      99999999998


Q ss_pred             CeEEEEEeeeeeCCCCCCc-ceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          388 PLISLSLIGFIRGPGDNPK-PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~-~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +.+     .++.+|...+. .++|||||++     |+.|..||+|++|++
T Consensus       316 k~l-----~tL~gH~~~vvs~vafSPDG~~-----LaSGS~D~TIklWd~  355 (356)
T 2w18_A          316 QCT-----ALLPPVSDQHWSFVKWSGTDSH-----LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SEE-----EEECCC--CCCCEEEECSSSSE-----EEEECTTSCEEEEEE
T ss_pred             cEE-----EEecCCCCCeEEEEEECCCCCE-----EEEEECCCcEEEecC
Confidence            876     56788887765 5899999986     888999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=212.03  Aligned_cols=249  Identities=16%  Similarity=0.190  Sum_probs=185.0

Q ss_pred             EecCCCCCeEEEEEeeC---CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCce
Q 013347          138 LTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  214 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~---~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  214 (444)
                      ...+|.+.|++++|+|+   |..+++++.||.|++|++...+.                       .....+.+|. ..|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~h~-~~v   89 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------------------TIPKAQQMHT-GPV   89 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------------------EEEEEEEECS-SCE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------------------eeEEEecccc-CCE
Confidence            34689999999999999   47788888899999999984221                       2234566775 899


Q ss_pred             EEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEE--ecCCCeEEEEecCCcEEEEECCCCceecccc
Q 013347          215 TALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKW--SPTGDYFFAAKFDGTFYLWETNTWTSEPWSS  292 (444)
Q Consensus       215 ~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  292 (444)
                      .+++|+|++++|++++.|+ .|++||+.+++......|...|.+++|  +|++++|++++.|+.|++||+++++......
T Consensus        90 ~~~~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  168 (368)
T 3mmy_A           90 LDVCWSDDGSKVFTASCDK-TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ  168 (368)
T ss_dssp             EEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred             EEEEECcCCCEEEEEcCCC-cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence            9999999999999999998 999999999988888889999999999  8899999999999999999999988744444


Q ss_pred             CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE----EEEEe
Q 013347          293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER----LAVSY  368 (444)
Q Consensus       293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~----l~~~~  368 (444)
                      ....+.++.+.++  .++++.. ++.+..|++.....         ..........+ .+..+.+.++...    +++++
T Consensus       169 ~~~~~~~~~~~~~--~~~~~~~-~~~i~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  235 (368)
T 3mmy_A          169 LPERCYCADVIYP--MAVVATA-ERGLIVYQLENQPS---------EFRRIESPLKH-QHRCVAIFKDKQNKPTGFALGS  235 (368)
T ss_dssp             CSSCEEEEEEETT--EEEEEEG-GGCEEEEECSSSCE---------EEEECCCSCSS-CEEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEecCC--eeEEEeC-CCcEEEEEeccccc---------hhhhccccccC-CCceEEEcccCCCCCCeEEEec
Confidence            4456667776654  5554443 35666666532110         00111111112 4455555544433    99999


Q ss_pred             cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC------------CCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          369 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD------------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       369 ~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .|      +.|++|++......  .....+.+|..            .|++++|+|+|++     |+.+..+|.|++|++
T Consensus       236 ~d------g~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-----l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          236 IE------GRVAIHYINPPNPA--KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-----LATVGSDGRFSFWDK  302 (368)
T ss_dssp             TT------SEEEEEESSCSCHH--HHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-----EEEEETTSCEEEEET
T ss_pred             CC------CcEEEEecCCCCcc--ccceeeeeeecccccccccccccceEEEEEecCCCE-----EEEEccCCeEEEEEC
Confidence            88      99999999876320  11234556654            6999999999886     788889999999987


Q ss_pred             e
Q 013347          437 I  437 (444)
Q Consensus       437 ~  437 (444)
                      .
T Consensus       303 ~  303 (368)
T 3mmy_A          303 D  303 (368)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=6.4e-26  Score=209.37  Aligned_cols=244  Identities=10%  Similarity=0.089  Sum_probs=175.2

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..|...|++++|+|||..+ +++.+..+++|+++...                         ..  ...+. ..+..+++
T Consensus        16 ~~h~~~V~~v~fs~dg~~l-a~g~~~~~~iw~~~~~~-------------------------~~--~~~~~-~~~~~~~~   66 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCL-ILSTLKSFEIYNVHPVA-------------------------HI--MSQEM-RHLSKVRM   66 (355)
T ss_dssp             ---CCCCCEEEECTTSSEE-EEECSSEEEEEEETTEE-------------------------EE--EEEEC-SCCCEEEE
T ss_pred             ccCCCceEEEEECCCCCEE-EEEcCCEEEEEecCCcc-------------------------ee--eeeec-CCeEEEEE
Confidence            5799999999999996554 55556568999987211                         11  11111 35778889


Q ss_pred             ccCCCeEE-EEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC-ce-eccccCCCc
Q 013347          220 GPDGRYLA-SASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGF  296 (444)
Q Consensus       220 sp~~~~l~-~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~-~~-~~~~~~~~~  296 (444)
                      .++++.++ +++.|+ +|++||+.+++......+...|.+++|+++.  ++++ .++.|++||+.++ +. ..+..   .
T Consensus        67 ~~~~~~~~~~~~~d~-~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~  139 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKE-VVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F  139 (355)
T ss_dssp             CTTSSEEEEECSSTT-EEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred             cCCCCEEEEEECCcc-EEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence            99888875 566676 9999999999887777788899999998764  4444 4789999999987 44 23333   4


Q ss_pred             eeEEEECCCCCEEEEE-EcCCceEEEEEeecCCCCc--CCCcCCCCccc-ccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347          297 VTGATWDPEGRMILLA-FAGSLTLGSIHFASKPPSL--DAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       297 v~~~~~sp~g~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~-~v~~~~~spdg~~l~~~~~d~  371 (444)
                      ...+++++  .+++++ +..++.+..|++.......  +.........+ +..+.+|. .|.+++|+|+|++|++++.| 
T Consensus       140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d-  216 (355)
T 3vu4_A          140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD-  216 (355)
T ss_dssp             EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred             CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC-
Confidence            45566777  667765 6777888888765321000  00000001112 66788898 99999999999999999999 


Q ss_pred             Cccccce-EEEEEcCCCCeEEEEEeeeee-C-CCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          372 DDIYKGL-IAIYDARRTPLISLSLIGFIR-G-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       372 ~~~~d~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                           ++ |++||+++++.+     ..+. + |...|.+++|+|||++     |+.+..+|.|.+|++.
T Consensus       217 -----~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s~~~~~-----l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          217 -----GTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWSTDGSK-----LAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             -----CSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEECTTSCE-----EEEEETTCEEEEEESS
T ss_pred             -----CCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEECCCCCE-----EEEEECCCEEEEEEcc
Confidence                 98 999999988765     4566 6 9999999999999886     8888899999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=9.7e-26  Score=199.69  Aligned_cols=241  Identities=14%  Similarity=0.065  Sum_probs=163.9

Q ss_pred             ccccccccccccccccccCCCCccCcc-------ccceEEEEEecC----CCeEEEEECCCeEEEEEccCCCCceeEEec
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLP-------EVDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTS  140 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~sp~----g~~la~~~~dg~v~iw~~~~~~~~~~~~~~  140 (444)
                      .+...+++|+..++...+.|....++.       ...|++++++||    ++++++++.  .+++|++.+ ++.......
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~-g~lv~ss~~  153 (356)
T 2w18_A           77 EKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTK-RRLVSSSGT  153 (356)
T ss_dssp             EEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETT-TEEEEEESS
T ss_pred             eeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCC-CcEEEeccc
Confidence            566778888877777777766555554       237999999999    999998773  377786643 222222222


Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      +|...|..++++|+|+.                                             ...+.+|. ..+..++|+
T Consensus       154 g~d~~V~~~~~s~dG~~---------------------------------------------~~s~~~~~-~~v~~l~fs  187 (356)
T 2w18_A          154 LSDQQVEVMTFAEDGGG---------------------------------------------KENQFLMP-PEETILTFA  187 (356)
T ss_dssp             STTCEEEEEEECTTSCE---------------------------------------------EEEEEECC-CSSCEEEEE
T ss_pred             CCCCcEEEEEECCCCce---------------------------------------------eeeeccCC-CceeeEEee
Confidence            34444444444444322                                             22334453 678889999


Q ss_pred             c---CCCeEEEEeeCCCeEEEEEcCCCCceeee-cCC---CCeEEEEEecCCCeE------------EEEecCCcEEEEE
Q 013347          221 P---DGRYLASASYESSSFTIWDVAQGLGTPIR-RGF---GGLSILKWSPTGDYF------------FAAKFDGTFYLWE  281 (444)
Q Consensus       221 p---~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l------------~~~~~d~~v~iwd  281 (444)
                      +   ++.+|++++.|+ +|+|||++++++.... .|.   ..+.+++|+|+|+++            ++|+.|++|++||
T Consensus       188 ~~~g~~~~LaSgS~D~-TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          188 EVQGMQEALLGTTIMN-NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEETSTTEEEEEETTS-EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred             ccCCCCceEEEecCCC-cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            8   789999999998 9999999999877644 333   467788999999876            5677899999999


Q ss_pred             CCCCceecc------ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-cee-
Q 013347          282 TNTWTSEPW------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIE-  353 (444)
Q Consensus       282 ~~~~~~~~~------~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-  353 (444)
                      ..+++....      .+|...+.+..++  +.+++++ +.+++++.|++.             +++.+.++++|. .+. 
T Consensus       267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg-S~DgTIkIWDl~-------------tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          267 PKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI-LTSGTIAIWDLL-------------LGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             TTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE-ETTSCEEEEETT-------------TCSEEEEECCC--CCCC
T ss_pred             CCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE-cCCCcEEEEECC-------------CCcEEEEecCCCCCeEE
Confidence            999886321      2455444444443  6666654 555777777753             456778888887 444 


Q ss_pred             EEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      .++|+|||++|++|+.|      ++|+|||+
T Consensus       331 ~vafSPDG~~LaSGS~D------~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKD------GNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTT------SCEEEEEE
T ss_pred             EEEECCCCCEEEEEECC------CcEEEecC
Confidence            68999999999999998      99999996

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=2.2e-24  Score=197.17  Aligned_cols=283  Identities=8%  Similarity=-0.000  Sum_probs=195.4

Q ss_pred             EEEecCCCe-EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceee
Q 013347          105 VSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       105 ~~~sp~g~~-la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~  182 (444)
                      ..|.+++++ +++.+.++.|.+||..+ ++...... .+...+ .++|+|+++.+++++. ++.|.+||+......    
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----   75 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDT-LEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK----   75 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTT-CCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcc-cceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----
Confidence            346666655 56677899999999987 55555543 445566 9999999887877776 799999999844320    


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCCCeEEEE
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILK  260 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~~v~~~~  260 (444)
                                          ...+..+. ....+++|+|+|++++++..+++  .|.+||+.+++............+++
T Consensus        76 --------------------~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~  134 (331)
T 3u4y_A           76 --------------------VVAIQEGQ-SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIA  134 (331)
T ss_dssp             --------------------EEEEEECS-SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEE
T ss_pred             --------------------EEecccCC-CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceE
Confidence                                11222232 34444999999999995554434  89999999988777666667789999


Q ss_pred             EecCCCeEEEE-ecCCc-EEEEECCCCcee-----ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          261 WSPTGDYFFAA-KFDGT-FYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       261 ~sp~~~~l~~~-~~d~~-v~iwd~~~~~~~-----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      |+|+|++++++ ..++. |.+|++......     ........+..++|+|+|++++++...+..+..|++..       
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-------  207 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-------  207 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-------
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-------
Confidence            99999876544 55578 999998754321     22234456899999999998888877778888887632       


Q ss_pred             CcCCCCccc---ccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEee-eeeCCCCC---Cc
Q 013347          334 HLLPVDLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDN---PK  406 (444)
Q Consensus       334 ~~~~~~~~~---~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~---i~  406 (444)
                            ...   +..+..+..+..++|+|||++|++++..     ++.|.+||+.+++........ .+..+...   ..
T Consensus       208 ------~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
T 3u4y_A          208 ------PENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN  276 (331)
T ss_dssp             ------TTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred             ------CcccceeeeccCCCCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence                  222   4455555577899999999988877653     278999999988763222111 11111222   24


Q ss_pred             ceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          407 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       407 ~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .++|+|||++    +...+..+|.|.+|++.
T Consensus       277 ~~~~spdg~~----l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          277 QMALNKTETK----LFISANISRELKVFTIS  303 (331)
T ss_dssp             CEEECTTSSE----EEEEETTTTEEEEEETT
T ss_pred             ceEECCCCCE----EEEecCCCCcEEEEEec
Confidence            5899999987    34445567799999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1e-24  Score=195.59  Aligned_cols=256  Identities=14%  Similarity=0.115  Sum_probs=183.5

Q ss_pred             EECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCC
Q 013347          117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (444)
Q Consensus       117 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (444)
                      ++.++.|++||+.+ ++....  ..|...|.+++|+|+++.++++ .++.|++||+...+....                
T Consensus        18 ~~~~~~i~~~d~~~-~~~~~~--~~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~----------------   77 (297)
T 2ojh_A           18 GSMRSSIEIFNIRT-RKMRVV--WQTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEK----------------   77 (297)
T ss_dssp             CCCCEEEEEEETTT-TEEEEE--EEESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEE----------------
T ss_pred             CCcceeEEEEeCCC-Cceeee--ccCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceE----------------
Confidence            35788999999986 333332  3678899999999997766655 589999999985122211                


Q ss_pred             CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC--C-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEe
Q 013347          197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--S-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAK  272 (444)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~  272 (444)
                              ....+....+.+++|+|++++|++++.+  + ..|.+|++.++....+.. ...+..++|+|++++|+ ++.
T Consensus        78 --------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~  148 (297)
T 2ojh_A           78 --------VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGI  148 (297)
T ss_dssp             --------CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEE
T ss_pred             --------eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEEC
Confidence                    1223333678899999999999998833  2 155555656655444433 34588999999999886 777


Q ss_pred             cCCcEEEEEC--CCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          273 FDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       273 ~d~~v~iwd~--~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      .++.+++|++  .+++...+..+...+.+++|+|++++++++...++.+..|.+..            ....+..+..+.
T Consensus       149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~  216 (297)
T 2ojh_A          149 RDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV------------DGSSVERITDSA  216 (297)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------TSSCEEECCCCS
T ss_pred             CCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC------------CCCCcEEEecCC
Confidence            8998899884  55666667778888999999999999887765555556665531            223345555566


Q ss_pred             -ceeEEEECCCCCEEEEEecCCCcc-----ccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          351 -GIEKIAWDASGERLAVSYKGGDDI-----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       351 -~v~~~~~spdg~~l~~~~~d~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                       .+..++|+|+|++|++++.+....     .++.|++||+.+++...   +..+.+|...+.+++|+|||++
T Consensus       217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET---LFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE---EEEEEESTTTSCSCCBCTTSSE
T ss_pred             cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee---eeccCCCCcccccceECCCCCE
Confidence             788999999999999887652110     12579999999876542   2234567888999999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=2.4e-25  Score=226.08  Aligned_cols=281  Identities=11%  Similarity=0.117  Sum_probs=196.1

Q ss_pred             ccceEEEEEecCCCeEEEEEC-CC-----eEEEEEccCCCCceeEEecCCC------------------------CCeEE
Q 013347           99 EVDLQGVSWHQHKHIVAFISG-ST-----QVIVRDYEDSGKDACILTSDSQ------------------------RDVKV  148 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~------------------------~~v~~  148 (444)
                      ...+.+++|||||++|++++. |+     .|.+||+.+ ++...... .+.                        ..|.+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-GQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-CCEEEEEC-GGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-CceeEccc-hhhcccccccccchhhhhhhhhhhccccCcce
Confidence            345899999999999999998 88     899999987 44443332 222                        23789


Q ss_pred             EEEeeCCCeEEEEecCCcEEEEecCCCC--CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE
Q 013347          149 LEWRPNGGRSLSVGCKGGICIWAPSYPG--NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL  226 (444)
Q Consensus       149 l~~s~~~~~ll~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  226 (444)
                      ++|||||+.+++++. +.|++||+....  ....                         +..+ ...+.+++|+|||++|
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------------------l~~~-~~~~~~~~~SPDG~~l  166 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------------------LTHG-EGFATDAKLSPKGGFV  166 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------------------CCCS-SSCEEEEEECTTSSEE
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------------------cccC-CcccccccCCCCCCEE
Confidence            999999877777765 999999998542  2211                         2233 3679999999999999


Q ss_pred             EEEeeCCCeEEEEEcCCCCceeeecCCCC-----------------eEEEEEecCCCeEEEEecCC--------------
Q 013347          227 ASASYESSSFTIWDVAQGLGTPIRRGFGG-----------------LSILKWSPTGDYFFAAKFDG--------------  275 (444)
Q Consensus       227 ~~~~~d~~~i~iwd~~~~~~~~~~~~~~~-----------------v~~~~~sp~~~~l~~~~~d~--------------  275 (444)
                      ++++ ++ .|++||+.+++...+......                 +..++|+|||++|++++.|+              
T Consensus       167 a~~~-~~-~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~  244 (741)
T 2ecf_A          167 SFIR-GR-NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD  244 (741)
T ss_dssp             EEEE-TT-EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred             EEEe-CC-cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence            9887 44 899999998866654433221                 47899999999999887665              


Q ss_pred             -------------------cEEEEECCC-Cceeccc---cCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCCCCc
Q 013347          276 -------------------TFYLWETNT-WTSEPWS---STSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSL  331 (444)
Q Consensus       276 -------------------~v~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~~~~  331 (444)
                                         .|++||+.+ ++...+.   .+...+.+++| |+|++|+++.. .......+.+|+..   
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~---  320 (741)
T 2ecf_A          245 RTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA---  320 (741)
T ss_dssp             CEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT---
T ss_pred             cccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC---
Confidence                               789999998 8764433   46778999999 99999987653 22233444444321   


Q ss_pred             CCCcCCCCcccccccccCC-----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCCCCCC
Q 013347          332 DAHLLPVDLPDIVSLTGSQ-----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNP  405 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~i  405 (444)
                             +......+..+.     .+..++|+|||+++++++.+      +.++||.+. .+. .     ..+..+...+
T Consensus       321 -------~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~~~~~~-~-----~~l~~~~~~v  381 (741)
T 2ecf_A          321 -------SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERT------GFQHLYRIDSKGK-A-----AALTHGNWSV  381 (741)
T ss_dssp             -------TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTT------SSCEEEEECSSSC-E-----EESCCSSSCE
T ss_pred             -------CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCC------CccEEEEEcCCCC-e-----eeeeecceEE
Confidence                   122222222222     34689999999988888776      767777665 222 2     3455666677


Q ss_pred             cce-eeeeCCCCCCCceEEEEeccc--eeeeeeee
Q 013347          406 KPV-AFSFHDKFKQGPLLSVCWSSG--FCCTYPLI  437 (444)
Q Consensus       406 ~~v-~~spdg~~~~~~~l~~~~~~g--~i~~~~~~  437 (444)
                      ..+ +|||||+.    ++..+..++  .+.+|.+.
T Consensus       382 ~~~~~~s~dg~~----l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          382 DELLAVDEKAGL----AYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EEEEEEETTTTE----EEEEECSSCTTCBEEEEEE
T ss_pred             EeEeEEeCCCCE----EEEEEeCCCCceEEEEEEE
Confidence            777 59999986    334444454  67777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.2e-24  Score=211.28  Aligned_cols=308  Identities=10%  Similarity=0.039  Sum_probs=210.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEc--cCCCCceeEEecCCCCCeEEEEEee----CCCeEEEEec-CCcEEEEec
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDY--EDSGKDACILTSDSQRDVKVLEWRP----NGGRSLSVGC-KGGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~--~~~~~~~~~~~~~~~~~v~~l~~s~----~~~~ll~~~~-dg~v~iw~~  172 (444)
                      ..+++++|+|||++|++++.|+.|++||+  .+ ++....+  .+...+..++|+|    ||+++++++. +++|.+||.
T Consensus       179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i--~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~  255 (543)
T 1nir_A          179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEI--KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  255 (543)
T ss_dssp             TTEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEE--ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             cccceEEECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEE--ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec
Confidence            35889999999999999999999999999  55 4444443  3556789999999    9888888775 799999998


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--ee
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IR  250 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~  250 (444)
                      .+.+....+......               ......|....+..+.++|+++.++++..+.++|.+||+.+.+...  ..
T Consensus       256 ~t~~~~~~i~~~g~~---------------~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i  320 (543)
T 1nir_A          256 ETLEPKQIVSTRGMT---------------VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  320 (543)
T ss_dssp             TTCCEEEEEECCEEC---------------SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred             cccccceeecccCcc---------------cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence            755443333221000               0000013334789999999877665554443499999998876543  33


Q ss_pred             cCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCCCceec-cc----cCCCceeEEEECCCCCEEEEEE-cCCceEEEEE
Q 013347          251 RGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAF-AGSLTLGSIH  323 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~~  323 (444)
                      .+...+.+++|+|+|++|+++ ..+++|.+||+.++++.. +.    .|.+....+ ++|++..++++. ..+.++..|+
T Consensus       321 ~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d  399 (543)
T 1nir_A          321 GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIG  399 (543)
T ss_dssp             ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred             ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEE
Confidence            455678899999999987655 458899999999998743 22    254433333 478744444443 3556777777


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc-cccceEEEEEcCCCCeE-EEEEeee---
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRTPLI-SLSLIGF---  397 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~-~~d~~i~vwd~~~~~~~-~~~~~~~---  397 (444)
                      .....      -.....+.++++.+|. .+..++|+|||++|++++.-+.+ ..+++|.|||+.+++.. ...++..   
T Consensus       400 ~~~~~------~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~  473 (543)
T 1nir_A          400 TDPKN------HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD  473 (543)
T ss_dssp             CCTTT------CTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred             eCCCC------CchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence            54210      0011256778888887 78899999999999998732110 11379999999988765 2222222   


Q ss_pred             eeCCCCCCcceeeeeCCCCCCCceEEEEe----ccceeeeeee
Q 013347          398 IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYPL  436 (444)
Q Consensus       398 ~~~~~~~i~~v~~spdg~~~~~~~l~~~~----~~g~i~~~~~  436 (444)
                      +..+...+..++|+|||++    ++...|    .++.|.+|+.
T Consensus       474 ~~~~~~~~~~~~~~~~g~~----~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          474 LGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             CCSSCCEEEEEEECSSSSE----EEEEEECCTTSCCEEEEEET
T ss_pred             cCCCCCceEeccCCCCCCE----EEEEeecCCCCCCeEEEEEC
Confidence            2345677899999999997    344445    3688888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=3.5e-24  Score=196.59  Aligned_cols=281  Identities=12%  Similarity=0.118  Sum_probs=191.7

Q ss_pred             EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeecccccccccc
Q 013347          114 VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGAL  192 (444)
Q Consensus       114 la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~  192 (444)
                      +++++.++.|++|+++..+.........+...+.+++|+|+++.+++++.+ +.|++|+++....               
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~---------------   72 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG---------------   72 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---------------
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC---------------
Confidence            344468999999999643433333334677789999999998888888876 9999999972211               


Q ss_pred             ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC---CceeeecCCCCeEEEEEecCCCeEE
Q 013347          193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---LGTPIRRGFGGLSILKWSPTGDYFF  269 (444)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~  269 (444)
                            .+.....+..+  ..+..++|+|++++|++++.+++.|.+||+..+   +..........+.+++|+|++++++
T Consensus        73 ------~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  144 (343)
T 1ri6_A           73 ------ALTFAAESALP--GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW  144 (343)
T ss_dssp             ------CEEEEEEEECS--SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred             ------ceeeccccccC--CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEE
Confidence                  11222333333  378899999999988887764349999999532   3333444456788999999999887


Q ss_pred             EEe-cCCcEEEEECCC-Ccee-----ccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347          270 AAK-FDGTFYLWETNT-WTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       270 ~~~-~d~~v~iwd~~~-~~~~-----~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +++ .++.|++||+.+ ++..     ... .....+..++|+|++++++++...++.+..|++......+    .  ...
T Consensus       145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~----~--~~~  218 (343)
T 1ri6_A          145 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI----E--CVQ  218 (343)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC----E--EEE
T ss_pred             EecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE----E--EEe
Confidence            776 889999999987 5542     222 2345788999999999888777677778887763211000    0  001


Q ss_pred             cccccc-c---CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          342 DIVSLT-G---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       342 ~~~~~~-~---~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                      .+..+. +   ...+..++|+|+|++|+++...     ++.|++|++.  ++...   .+..+..+.. +.+++|+|||+
T Consensus       219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s~dg~  289 (343)
T 1ri6_A          219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVDHSGK  289 (343)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEECTTSS
T ss_pred             eccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEECCCCC
Confidence            111111 1   1256789999999988866543     1899999998  33322   2334444444 88999999998


Q ss_pred             CCCCceEEEE-eccceeeeeeee
Q 013347          416 FKQGPLLSVC-WSSGFCCTYPLI  437 (444)
Q Consensus       416 ~~~~~~l~~~-~~~g~i~~~~~~  437 (444)
                      +     |.++ ..+|.|.+|.+.
T Consensus       290 ~-----l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          290 Y-----LIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             E-----EEEECTTTCEEEEEEEE
T ss_pred             E-----EEEecCCCCeEEEEEEc
Confidence            6     4444 467899988665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.1e-24  Score=211.54  Aligned_cols=276  Identities=15%  Similarity=0.115  Sum_probs=202.5

Q ss_pred             EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEec--CCCCCcceeec
Q 013347          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP--SYPGNAASVRS  183 (444)
Q Consensus       106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~--~~~~~~~~~~~  183 (444)
                      +++|++.++++++.+++|.+||..+ ++....+..++.  +..++|+|||+++++++.|+.|++||+  .+.        
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t-~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------  212 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDS-KKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------  212 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTT-CCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCC-ceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC--------
Confidence            4889999999999999999999987 555555543544  899999999999999999999999999  422        


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----CCCeEEEEee-CCCeEEEEEcCCCCceeeecC------
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRYLASASY-ESSSFTIWDVAQGLGTPIRRG------  252 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~~------  252 (444)
                                       .++..+..+  ..+..++|+|    ||+++++++. ++ +|.+||..+++.......      
T Consensus       213 -----------------~~~~~i~~g--~~p~~va~sp~~~~dg~~l~v~~~~~~-~v~v~D~~t~~~~~~i~~~g~~~~  272 (543)
T 1nir_A          213 -----------------TKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPP-QFAIMDGETLEPKQIVSTRGMTVD  272 (543)
T ss_dssp             -----------------EEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEESS-EEEEEETTTCCEEEEEECCEECSS
T ss_pred             -----------------cEEEEEecC--CCcceEEeCCCcCCCCCEEEEEEccCC-eEEEEeccccccceeecccCcccC
Confidence                             233344432  5789999999    9999999986 55 999999998877654321      


Q ss_pred             ------CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          253 ------FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       253 ------~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                            ...+..+.++|++..+ ++...++.|.+||..+.+...  ...+...+.++.|+|+|++++++...+.++..|+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                  2378899999987765 667778999999998865422  3346677889999999999988877777788777


Q ss_pred             eecCCCCcCCCcCCCCccccccccc----CC-ceeEEEECCC-CCEEEEEe-cCCCccccceEEEEEcCCCCe--EEEEE
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTG----SQ-GIEKIAWDAS-GERLAVSY-KGGDDIYKGLIAIYDARRTPL--ISLSL  394 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~~~spd-g~~l~~~~-~d~~~~~d~~i~vwd~~~~~~--~~~~~  394 (444)
                      ..             +.+.+..+..    |. ....+ ++|+ |.+++++. .+      ++|.|||+.+...  ...+.
T Consensus       353 ~~-------------tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d------~~V~v~d~~~~~~~~~~~~~  412 (543)
T 1nir_A          353 SK-------------DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGD------GSISLIGTDPKNHPQYAWKK  412 (543)
T ss_dssp             TT-------------TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSS------SEEEEEECCTTTCTTTBTSE
T ss_pred             CC-------------CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCC------ceEEEEEeCCCCCchhcCeE
Confidence            53             2233333332    32 22222 4787 55566654 34      8999999987110  00223


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEe-------ccceeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW-------SSGFCCTYPLI  437 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~-------~~g~i~~~~~~  437 (444)
                      ++.+.+|...+..++|+|||++     |.++.       .++.|.+|++.
T Consensus       413 v~~l~~~g~~~~~v~~~pdg~~-----l~v~~~~~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          413 VAELQGQGGGSLFIKTHPKSSH-----LYVDTTFNPDARISQSVAVFDLK  457 (543)
T ss_dssp             EEEEECSCSCCCCEECCTTCCE-----EEECCTTCSSHHHHTCEEEEETT
T ss_pred             EEEEEcCCCCceEEEcCCCCCc-----EEEecCCCCCcccCceEEEEECC
Confidence            4678889888899999999987     66654       26688888764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=2.8e-24  Score=212.02  Aligned_cols=252  Identities=13%  Similarity=0.097  Sum_probs=179.3

Q ss_pred             cceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCC-
Q 013347          100 VDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSY-  174 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~-  174 (444)
                      .+|++++|+|||++||+++. ||+++||+++.  .....++..+...+.+++|+|| +.++++..   +...+||.++. 
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~--g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG--GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEET--TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcC--CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            36999999999999999886 99999999864  3444444344468999999999 54444443   35667776653 


Q ss_pred             -CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE-eeCCCeEEEEEcCCCCceeeecC
Q 013347          175 -PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA-SYESSSFTIWDVAQGLGTPIRRG  252 (444)
Q Consensus       175 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~~i~iwd~~~~~~~~~~~~  252 (444)
                       .+....+.                         ..  ..+...+|+|+|+.++.. +.++ .+.+||+.+++...+..+
T Consensus        99 ~~g~~~~l~-------------------------~~--~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~  150 (582)
T 3o4h_A           99 RPGEEQRLE-------------------------AV--KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARL  150 (582)
T ss_dssp             STTCCEECT-------------------------TS--CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEE
T ss_pred             CCCcccccc-------------------------CC--CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecC
Confidence             22222111                         11  234466888888754333 3333 566999999877776665


Q ss_pred             CCCeEEEEEecCCCeEEEEecC----CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeec
Q 013347          253 FGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFAS  326 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~  326 (444)
                      ..  .+++|+|||++|++++.+    +.|++||+.+++...+..+...+..++|+|||+.|++ ++.++  .++.|++. 
T Consensus       151 ~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~-~~~~~~~~i~~~d~~-  226 (582)
T 3o4h_A          151 PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG-LETAREARLVTVDPR-  226 (582)
T ss_dssp             SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE-EECSSCEEEEEECTT-
T ss_pred             CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE-ccCCCeeEEEEEcCC-
Confidence            54  789999999999987776    7899999999998888888889999999999999994 44444  44444431 


Q ss_pred             CCCCcCCCcCCCCcccccccccCC-ceeEEE--------ECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA--------WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  397 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--------~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~  397 (444)
                                  ..... .+.++. .+..++        |+|||+++++++.+      +++++|++  ++...      
T Consensus       227 ------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~------g~~~l~~~--g~~~~------  279 (582)
T 3o4h_A          227 ------------DGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE------GRSAVFID--GERVE------  279 (582)
T ss_dssp             ------------TCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET------TEEEEEET--TEEEC------
T ss_pred             ------------CCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC------CcEEEEEE--CCeec------
Confidence                        11222 444554 555566        99999888888888      99999999  54331      


Q ss_pred             eeCCCCCCcceeeeeCCCC
Q 013347          398 IRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       398 ~~~~~~~i~~v~~spdg~~  416 (444)
                        .+...+.+++|+ ||++
T Consensus       280 --~~~~~v~~~~~s-dg~~  295 (582)
T 3o4h_A          280 --APQGNHGRVVLW-RGKL  295 (582)
T ss_dssp             --CCSSEEEEEEEE-TTEE
T ss_pred             --cCCCceEEEEec-CCEE
Confidence              233567789999 8875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=4.5e-23  Score=190.08  Aligned_cols=271  Identities=8%  Similarity=0.002  Sum_probs=194.8

Q ss_pred             cceEEEEEecCCCeEEEEEC-------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEe
Q 013347          100 VDLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA  171 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~  171 (444)
                      ..+..++|+|+|+++++++.       ++.|.+||..+ ++....+.  ....+..++|+|+++.++++.. ++.|.+||
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-LEVTQAIH--NDLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-CCEEEEEE--ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-CeEEEEEe--cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            35889999999999988773       56899999987 44444443  2345788999999887776665 69999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCceee
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~~  249 (444)
                      ..+.+....+......                 .........+.+++|+|+|+++++++.  ++ .|.+||+.+++....
T Consensus       118 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~i~~~d~~~~~~~~~  179 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRK-----------------RTEEVRPLQPRELVADDATNTVYISGIGKES-VIWVVDGGNIKLKTA  179 (353)
T ss_dssp             TTTCCEEEEEESCCCC-----------------CCSSCCCCEEEEEEEETTTTEEEEEEESSSC-EEEEEETTTTEEEEE
T ss_pred             CCCCeeEEEEecCCCc-----------------cccccCCCCCceEEECCCCCEEEEEecCCCc-eEEEEcCCCCceEEE
Confidence            9854433222211000                 000000113788999999998888763  55 899999998877765


Q ss_pred             ec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc----cCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          250 RR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       250 ~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      .. +...+..++|+|+++++++++.++.|.+||+.+++... +.    ++...+.+++|+|++++++++...++.+..|+
T Consensus       180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred             ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence            55 55568899999999999999999999999999988743 22    24556788999999999988877777788777


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  403 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  403 (444)
                      ...             ...+..+....+ ..++|+|+|++++++....     +.|.+||+.+++...     .+.. ..
T Consensus       260 ~~~-------------~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~-----~~~~-~~  314 (353)
T 3vgz_A          260 TRN-------------GNILAKVAAPES-LAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVK-----TFDT-PT  314 (353)
T ss_dssp             TTT-------------CCEEEEEECSSC-CCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEE-----EEEC-CS
T ss_pred             CCC-------------CcEEEEEEcCCC-ceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEE-----EEec-CC
Confidence            532             222333332222 5699999999877776432     899999999887652     3333 33


Q ss_pred             CCcceeeeeCCCC
Q 013347          404 NPKPVAFSFHDKF  416 (444)
Q Consensus       404 ~i~~v~~spdg~~  416 (444)
                      .+.+++|+|||++
T Consensus       315 ~~~~~~~s~dg~~  327 (353)
T 3vgz_A          315 HPNSLALSADGKT  327 (353)
T ss_dssp             EEEEEEECTTSCE
T ss_pred             CCCeEEEcCCCCE
Confidence            5689999999986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.2e-22  Score=186.40  Aligned_cols=272  Identities=14%  Similarity=0.168  Sum_probs=186.3

Q ss_pred             ceEEEEEecCCCeEEEEECC-CeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGS-TQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~d-g~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~  177 (444)
                      .+.+++|+|+|++|++++.+ +.|.+|++... +.............+..++|+|+++.+++++. ++.|.+|++. .+.
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~  117 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGL  117 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTE
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCc
Confidence            57889999999999988876 99999999832 33222211122337899999999888877776 6889999995 111


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCC-CCcee-----ee
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQ-GLGTP-----IR  250 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~-~~~~~-----~~  250 (444)
                      ..                     .....+..+  ..+.+++|+|+|+++++++ .++ .|.+||+.+ ++...     ..
T Consensus       118 ~~---------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~-~v~~~d~~~~~~~~~~~~~~~~  173 (343)
T 1ri6_A          118 PV---------------------GVVDVVEGL--DGCHSANISPDNRTLWVPALKQD-RICLFTVSDDGHLVAQDPAEVT  173 (343)
T ss_dssp             EE---------------------EEEEEECCC--TTBCCCEECTTSSEEEEEEGGGT-EEEEEEECTTSCEEEEEEEEEE
T ss_pred             cc---------------------cccccccCC--CCceEEEECCCCCEEEEecCCCC-EEEEEEecCCCceeeecccccc
Confidence            10                     122233333  4688999999999888887 676 999999987 54432     12


Q ss_pred             c-CCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCC--Ccee---c---ccc---CCCceeEEEECCCCCEEEEEEcCCc
Q 013347          251 R-GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT--WTSE---P---WSS---TSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       251 ~-~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~--~~~~---~---~~~---~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      . ....+..++|+|++++++++ ..++.|.+||+..  ++..   .   +..   ....+..++|+|+|++++++...++
T Consensus       174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~  253 (343)
T 1ri6_A          174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS  253 (343)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence            2 24578899999999977555 4789999999954  4321   1   111   1235678999999999988777778


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC--CCCeEEEEEe
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLI  395 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~--~~~~~~~~~~  395 (444)
                      .+..|++.....         ....+..+..+..+..++|+|+|++|++++.+.     +.|.+|+++  +++...   +
T Consensus       254 ~i~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~---~  316 (343)
T 1ri6_A          254 LITVFSVSEDGS---------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHE---K  316 (343)
T ss_dssp             EEEEEEECTTSC---------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEE---E
T ss_pred             EEEEEEEcCCCC---------ceEEeeeecCCCccceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeE---c
Confidence            888888742100         122333344344588999999999999888532     899999554  554432   2


Q ss_pred             eeeeCCCCCCcceeeeeCCC
Q 013347          396 GFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       396 ~~~~~~~~~i~~v~~spdg~  415 (444)
                      ..+.. ...+.+++|.|+.+
T Consensus       317 ~~~~~-g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          317 GRYAV-GQGPMWVVVNAHEG  335 (343)
T ss_dssp             EEEEC-SSSCCEEEEEEEC-
T ss_pred             ccccc-CCCCeeEEEEcccC
Confidence            33433 35577889988754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.7e-24  Score=219.21  Aligned_cols=291  Identities=11%  Similarity=0.070  Sum_probs=190.4

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC---CeEEEEEeeCCCeEEEEecC---------CcEEE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCK---------GGICI  169 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~l~~s~~~~~ll~~~~d---------g~v~i  169 (444)
                      +.+++|+|||+++++ +.||+|++||+.+ ++....+ ..|..   .|.+++|||||+++++++.+         +.+.+
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~-g~~~~~~-~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVET-NTSTVLI-EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGG-CCCEEEE-CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCC-CcEEEEe-ccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            567899999998776 7899999999998 4544444 35544   49999999998888888764         67889


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      ||+..+.. ..+..                      ..++ ...+..++|||||+.|++++. + .|++||+.+++...+
T Consensus        96 ~d~~~~~~-~~l~~----------------------~~~~-~~~~~~~~~SPdG~~la~~~~-~-~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A           96 SKIPHGDP-QSLDP----------------------PEVS-NAKLQYAGWGPKGQQLIFIFE-N-NIYYCAHVGKQAIRV  149 (723)
T ss_dssp             EESSSCCC-EECCC----------------------TTCC-SCCCSBCCBCSSTTCEEEEET-T-EEEEESSSSSCCEEE
T ss_pred             EECCCCce-EeccC----------------------Cccc-cccccccEECCCCCEEEEEEC-C-eEEEEECCCCceEEE
Confidence            99984432 11111                      1122 245889999999999999886 5 899999999877765


Q ss_pred             ecC-CCCe------------------EEEEEecCCCeEEEEecCC----------------------------------c
Q 013347          250 RRG-FGGL------------------SILKWSPTGDYFFAAKFDG----------------------------------T  276 (444)
Q Consensus       250 ~~~-~~~v------------------~~~~~sp~~~~l~~~~~d~----------------------------------~  276 (444)
                      ... ...+                  .+++|+|||++|++++.++                                  .
T Consensus       150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  229 (723)
T 1xfd_A          150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS  229 (723)
T ss_dssp             ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred             ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence            543 3323                  7899999999998887543                                  7


Q ss_pred             EEEEECCCCce-eccccC------CCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-
Q 013347          277 FYLWETNTWTS-EPWSST------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-  348 (444)
Q Consensus       277 v~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  348 (444)
                      |++||+.+++. ..+..+      ...+.+++|+|||+++++..........+.+|+..          +......+.. 
T Consensus       230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~----------~g~~~~~~~~~  299 (723)
T 1xfd_A          230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT----------TGVCTKKHEDE  299 (723)
T ss_dssp             EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT----------TCCEEEEEEEE
T ss_pred             EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC----------CCcceEEEEec
Confidence            99999998874 444433      56789999999999887665443334444444421          1222222222 


Q ss_pred             CC-ce----eEEEECCCCCEEEEE-e-cCCCccccceEEEEE-cCCCCeEEEEEeeeeeCCCCCCcc-eeeeeCCCCCCC
Q 013347          349 SQ-GI----EKIAWDASGERLAVS-Y-KGGDDIYKGLIAIYD-ARRTPLISLSLIGFIRGPGDNPKP-VAFSFHDKFKQG  419 (444)
Q Consensus       349 ~~-~v----~~~~~spdg~~l~~~-~-~d~~~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~i~~-v~~spdg~~~~~  419 (444)
                      +. .+    ..++|+|||++|+.. + .++.......|++|| ...++..   ....+..+...+.. ++|||||++   
T Consensus       300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~~~~~~~~~spdg~~---  373 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDWDVTKILAYDEKGNK---  373 (723)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSSCEEEEEEEETTTTE---
T ss_pred             cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCeEEEeeeEEcCCCCE---
Confidence            22 33    378999999988765 3 331000002677777 4444300   00123322233333 699999987   


Q ss_pred             ceEEEEecc--ceeeeeeeee
Q 013347          420 PLLSVCWSS--GFCCTYPLIF  438 (444)
Q Consensus       420 ~~l~~~~~~--g~i~~~~~~~  438 (444)
                       +...+..+  +.+.+|.+..
T Consensus       374 -l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          374 -IYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             -EEEEESSSCTTCCEEEEECS
T ss_pred             -EEEEEcCCCCcceEEEEEeC
Confidence             23334444  6777777653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=1.1e-22  Score=187.30  Aligned_cols=284  Identities=15%  Similarity=0.166  Sum_probs=185.7

Q ss_pred             eEEEEE----CCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeecc
Q 013347          113 IVAFIS----GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSG  184 (444)
Q Consensus       113 ~la~~~----~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~  184 (444)
                      .+++|+    .++.+.+|.++.. ++........+...+..++|+|||+ +++++.   ++.|++|++...         
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g---------   73 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ---------   73 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT---------
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC---------
Confidence            345554    3567889888753 3322222234556788899999976 776665   589999999622         


Q ss_pred             ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-CCceeee--cC---------
Q 013347          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIR--RG---------  252 (444)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~~~~~~~--~~---------  252 (444)
                                    ....+..+..+. ..+..++|+|+|++|++++.+++.|.+|++.. +....+.  .+         
T Consensus        74 --------------~~~~~~~~~~~~-~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~  138 (347)
T 3hfq_A           74 --------------TAHKLNTVVAPG-TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQ  138 (347)
T ss_dssp             --------------EEEEEEEEEEES-CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTC
T ss_pred             --------------cEEEeeeeecCC-CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccc
Confidence                          112223333342 67889999999999998884434999999963 3322221  11         


Q ss_pred             -CCCeEEEEEecCCCeEEEEecCCcEEEEECC-CCceecc---c-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          253 -FGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTSEPW---S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       253 -~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~~~~---~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                       ...+.+++|+|+|+++++...++.|++||+. +++....   . .....+..++|+|+|++++++...+..+..|++..
T Consensus       139 ~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          139 DGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence             1248889999999966666678899999998 5544221   1 23346788999999998888877778888887653


Q ss_pred             CCCCcCCCcCCCCcccccccc----cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC
Q 013347          327 KPPSLDAHLLPVDLPDIVSLT----GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG  402 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  402 (444)
                      ....+.      ....+....    +...+..++|+|||++|+++....     +.|.+|++.....  ...+..+..+.
T Consensus       219 ~~g~~~------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-----~~v~v~~~~~~g~--~~~~~~~~~~~  285 (347)
T 3hfq_A          219 QTGAFT------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-----NTLAVFAVTADGH--LTLIQQISTEG  285 (347)
T ss_dssp             TTTEEE------EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-----TEEEEEEECGGGC--EEEEEEEECSS
T ss_pred             CCCceE------EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-----CEEEEEEECCCCc--EEEeEEEecCC
Confidence            110000      000011111    112578899999999886655431     8999999973211  22344566667


Q ss_pred             CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          403 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       403 ~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      ..+..++|+|||++    +...+..++.|.+|.+..
T Consensus       286 ~~~~~~~~spdg~~----l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          286 DFPRDFDLDPTEAF----VVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             SCCCEEEECTTSSE----EEEEETTTTEEEEEEECT
T ss_pred             CCcCeEEECCCCCE----EEEEEcCCCcEEEEEEeC
Confidence            77899999999986    334445568999987654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=2.8e-23  Score=209.63  Aligned_cols=292  Identities=14%  Similarity=0.123  Sum_probs=193.0

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCC-----
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY-----  174 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~-----  174 (444)
                      ..|.+++|||| +.++++ .++.+++||+.+ ++... + ..+...+.+++|+|||+.+++ +.++.|++|++..     
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~-~~~~~-l-~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLA-RKVTY-L-FDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTT-TEEEE-E-ECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCC-CceEE-c-cCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccC
Confidence            46999999999 666665 469999999986 33332 2 356677899999999877766 5789999999985     


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-----------------------
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----------------------  231 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----------------------  231 (444)
                      .+.......+. .   .+..+..       ..+.+ ...+.+++|+|||++|++++.                       
T Consensus       156 g~~~~~~~~~~-~---~~~~g~~-------~~~ee-~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          156 SRAIAVTIDGT-E---TLVYGQA-------VHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CCCEESCSCCB-T---TEEESSC-------CGGGC-TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             CCcEEeccCCC-C---CeEcccc-------hhhhh-cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence            33221111110 0   0000000       01111 134689999999999999873                       


Q ss_pred             ----------CCCeEEEEEcCCCCceeee---cCCCCeEEEEEecCCCeEEEEecCC-----cEEEEECCCC-ceeccc-
Q 013347          232 ----------ESSSFTIWDVAQGLGTPIR---RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW-TSEPWS-  291 (444)
Q Consensus       232 ----------d~~~i~iwd~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~-~~~~~~-  291 (444)
                                +. .|++||+.+++...+.   .+...+.+++|+|||++|++++.++     .|++||+.++ +...+. 
T Consensus       224 ~y~~~g~~~~~~-~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~  302 (706)
T 2z3z_A          224 YYPMAGTPSHHV-TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV  302 (706)
T ss_dssp             CCCBTTSCCCEE-EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             eCCCCCCCCCee-EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence                      34 7999999988765543   3456789999999999998887775     8999999998 443332 


Q ss_pred             -cCCC---ceeEEEECC--CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE-EEECCCCCE
Q 013347          292 -STSG---FVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGER  363 (444)
Q Consensus       292 -~~~~---~v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~spdg~~  363 (444)
                       .+..   .+.+++|+|  +|++++++ ..++....|.+..            ....+..+..+. .+.. ++|+|||+.
T Consensus       303 ~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~------------~~~~~~~l~~~~~~v~~~~~~spdg~~  369 (706)
T 2z3z_A          303 ETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDT------------TGRLIRQVTKGEWEVTNFAGFDPKGTR  369 (706)
T ss_dssp             EECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEET------------TSCEEEECCCSSSCEEEEEEECTTSSE
T ss_pred             ccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEEC------------CCCEEEecCCCCeEEEeeeEEcCCCCE
Confidence             2222   246789999  99977755 4445555555421            233445566666 6766 799999998


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec-c---ceeeeeee
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS-S---GFCCTYPL  436 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~-~---g~i~~~~~  436 (444)
                      |+.++.+.+. ....|+.||+.+++..      .+ .|...+.+++|||||++     +++..+ .   +.|.+|++
T Consensus       370 l~~~~~~~~~-~~~~l~~~d~~~~~~~------~l-~~~~~~~~~~~spdg~~-----l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          370 LYFESTEASP-LERHFYCIDIKGGKTK------DL-TPESGMHRTQLSPDGSA-----IIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEEESSSCT-TCBEEEEEETTCCCCE------ES-CCSSSEEEEEECTTSSE-----EEEEEECSSCSCEEEEEES
T ss_pred             EEEEecCCCC-ceEEEEEEEcCCCCce------ec-cCCCceEEEEECCCCCE-----EEEEecCCCCCcEEEEEEC
Confidence            8877765210 0026777888776532      12 25566889999999987     333322 2   45777664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=3e-23  Score=189.86  Aligned_cols=272  Identities=10%  Similarity=0.033  Sum_probs=184.4

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCC-CeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ++|++++.++.|.+||+.+ ++....+..++.. .+..++|+|+++.+++++. ++.|.+||+.+.+....+...     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-----   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-----   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-----
T ss_pred             cEEEEcCCCCeEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC-----
Confidence            4788899999999999987 4444444333322 4788999999877766665 589999999854332222111     


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe------------eCCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS------------YESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~------------~d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                                      ....+...+.+++|+|+|++++++.            .++ .|.+||+.+++..........+.
T Consensus        76 ----------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~-~i~v~d~~~~~~~~~~~~~~~~~  138 (337)
T 1pby_B           76 ----------------TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT-RVALYDAETLSRRKAFEAPRQIT  138 (337)
T ss_dssp             ----------------BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEETTTTEEEEEEECCSSCC
T ss_pred             ----------------CcccccccccceEECCCCCEEEEEecccccccccccccCc-eEEEEECCCCcEEEEEeCCCCcc
Confidence                            0000012567899999999998886            456 99999999887666555566788


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEE-----------------
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG-----------------  320 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~-----------------  320 (444)
                      +++|+|++++|+++  ++.|++||+.+++.............+.|+|+++.++++...+..+.                 
T Consensus       139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T 1pby_B          139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             CEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             eeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence            89999999988877  68899999999877432221111123478999998776554433321                 


Q ss_pred             ---EEEeecCCCCcCCCcCCCCccc-ccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347          321 ---SIHFASKPPSLDAHLLPVDLPD-IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  395 (444)
Q Consensus       321 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~  395 (444)
                         .+.+++..          .... ...+..+. .+..++|+|||++|+++  +      +.|++||+.+++..     
T Consensus       217 ~~~~v~~~d~~----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~------~~v~~~d~~~~~~~-----  273 (337)
T 1pby_B          217 YRTGLLTMDLE----------TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y------NVLESFDLEKNASI-----  273 (337)
T ss_dssp             EEEEEEEEETT----------TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E------SEEEEEETTTTEEE-----
T ss_pred             cccceEEEeCC----------CCCceEeecCCCCCceeeEEECCCCCEEEEe--C------CeEEEEECCCCcCc-----
Confidence               11222210          1111 11222333 67889999999999988  4      79999999987765     


Q ss_pred             eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          396 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       396 ~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ..+.. ...+.+++|+|||++     |.++..+|.|.+|++.
T Consensus       274 ~~~~~-~~~~~~~~~s~dg~~-----l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          274 KRVPL-PHSYYSVNVSTDGST-----VWLGGALGDLAAYDAE  309 (337)
T ss_dssp             EEEEC-SSCCCEEEECTTSCE-----EEEESBSSEEEEEETT
T ss_pred             ceecC-CCceeeEEECCCCCE-----EEEEcCCCcEEEEECc
Confidence            22332 346789999999986     5556678999988763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=3.6e-23  Score=210.08  Aligned_cols=278  Identities=12%  Similarity=0.109  Sum_probs=183.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCC--CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      .|.+++|||||++|++++. +.|.+||+.+..  ... .+ ..|...+.+++|||||+.+++++ ++.|++||+......
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence            4789999999999999876 999999998731  332 23 36778899999999977666655 679999999743211


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC------------------------
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS------------------------  234 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~------------------------  234 (444)
                       .+......   .+..+. ..|.    .... ...+.+++|||||++|++++.|++                        
T Consensus       186 -~~~~~~~~---~~~~g~-~~~v----~~~~-~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          186 -QLTADGST---TIGNGI-AEFV----ADEE-MDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             -ECCCCCCS---SEEESC-CCHH----HHHH-SCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             -EeccCCcc---ceeccc-ccee----eeec-cccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence             11111000   000000 0000    0000 013578999999999999887642                        


Q ss_pred             --------eEEEEEcCC-CCceeee---cCCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCCCceeccc-cCC-C
Q 013347          235 --------SFTIWDVAQ-GLGTPIR---RGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STS-G  295 (444)
Q Consensus       235 --------~i~iwd~~~-~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~~~~~~~~-~~~-~  295 (444)
                              .|.+||+.+ ++...+.   .+...+..++| |||++|++++.     +..|++||+.+++...+. .+. .
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT  334 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence                    688899988 7766544   35577899999 99999987654     568999999998875433 222 2


Q ss_pred             ---ceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEE-EECCCCCEEEEEecC
Q 013347          296 ---FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKI-AWDASGERLAVSYKG  370 (444)
Q Consensus       296 ---~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~spdg~~l~~~~~d  370 (444)
                         .+.+++|+|+|++++++ +.++....|.+..            ... ...+..+. .+..+ .|+|||+.|+..+.+
T Consensus       335 ~~~~~~~~~~spdg~~~~~~-~~~g~~~l~~~~~------------~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~  400 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSS-ERTGFQHLYRIDS------------KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI  400 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEE-CTTSSCEEEEECS------------SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred             cCCcCCceEECCCCeEEEEe-cCCCccEEEEEcC------------CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC
Confidence               45689999999966544 4555444444311            223 45566666 78777 599999988766554


Q ss_pred             CCccccceEEEEEcCC-CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          371 GDDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       371 ~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ...   ..++||++.. +...     ..+.. ...+..++|||||++
T Consensus       401 ~~~---~~~~l~~~~~~g~~~-----~~l~~-~~~~~~~~~spdg~~  438 (741)
T 2ecf_A          401 ESA---RESQIYAVPLQGGQP-----QRLSK-APGMHSASFARNASV  438 (741)
T ss_dssp             SCT---TCBEEEEEETTCCCC-----EECCC-SCSEEEEEECTTSSE
T ss_pred             CCC---ceEEEEEEEcCCCCe-----eeccc-CCCceEEEECCCCCE
Confidence            210   2899998864 3221     23333 455779999999987

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.1e-23  Score=209.02  Aligned_cols=279  Identities=14%  Similarity=0.138  Sum_probs=181.4

Q ss_pred             ceEEEEEecCCCeEEEEECC---------CeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347          101 DLQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~d---------g~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw  170 (444)
                      .|.+++|||||++||+++.+         +.+.+||+.+ ++..... ...|...+..++|||||+.+++++. +.|++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            48899999999999998764         7888999987 3332221 1245556889999999877777665 899999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC--------CCceEEEEEccCCCeEEEEeeCCC--------
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS--------  234 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~--------  234 (444)
                      ++..+........+... .               .+.++.        ...+.+++|||||++|++++.+++        
T Consensus       140 ~~~~g~~~~~~~~~~~~-~---------------~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~  203 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEG-V---------------IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP  203 (723)
T ss_dssp             SSSSSCCEEEECCCBTT-T---------------EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred             ECCCCceEEEecCCCCC-c---------------eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence            99854332211111000 0               000000        023478999999999999876521        


Q ss_pred             -------------------------eEEEEEcCCCCc-eeeecC------CCCeEEEEEecCCCeEEEEec----CCcEE
Q 013347          235 -------------------------SFTIWDVAQGLG-TPIRRG------FGGLSILKWSPTGDYFFAAKF----DGTFY  278 (444)
Q Consensus       235 -------------------------~i~iwd~~~~~~-~~~~~~------~~~v~~~~~sp~~~~l~~~~~----d~~v~  278 (444)
                                               .|++||+.+++. ..+..+      ...+..++|+|||+++++...    +..|+
T Consensus       204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  283 (723)
T 1xfd_A          204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILT  283 (723)
T ss_dssp             CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEE
T ss_pred             ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEE
Confidence                                     689999988875 334332      457889999999998876643    35799


Q ss_pred             EEECCCCceeccc--cCCCce----eEEEECCCCCEEEEE-EcCCc------eEEEEEeecCCCCcCCCcCCCCccc---
Q 013347          279 LWETNTWTSEPWS--STSGFV----TGATWDPEGRMILLA-FAGSL------TLGSIHFASKPPSLDAHLLPVDLPD---  342 (444)
Q Consensus       279 iwd~~~~~~~~~~--~~~~~v----~~~~~sp~g~~l~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---  342 (444)
                      +||+.+++...+.  .+...+    ..++|+|+|+.|++. ...++      .++.+++  .           ....   
T Consensus       284 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~--~-----------~~~~~~~  350 (723)
T 1xfd_A          284 LCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSS--Q-----------PNSSNDN  350 (723)
T ss_dssp             EEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECS--S-----------CCSSSCC
T ss_pred             EEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEec--c-----------CCCCccc
Confidence            9999998874432  333444    388999999988865 44444      2333331  0           1111   


Q ss_pred             ccccccC-CceeE-EEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC---CCCCCcceeeeeCCCC
Q 013347          343 IVSLTGS-QGIEK-IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPVAFSFHDKF  416 (444)
Q Consensus       343 ~~~~~~~-~~v~~-~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~i~~v~~spdg~~  416 (444)
                      ...+..+ ..+.. ++|+|||++|+..+.+...   +.++||++......   ....+..   |...+..++|||||++
T Consensus       351 ~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~---~~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP---RRRQLYSANTVGNF---NRQCLSCDLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT---TCCEEEEECSSTTC---CCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             eeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC---cceEEEEEeCCCCC---CcceecccccCCCCeEEEEECCCCCE
Confidence            3344433 34554 6999999999877765211   57889988643210   0112332   5667889999999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=2.8e-22  Score=183.10  Aligned_cols=242  Identities=10%  Similarity=0.094  Sum_probs=167.8

Q ss_pred             ceEEEEEecCCCeEEEEEC-CCeEEEEEccCCCCc-eeEEecCCCCCeEEEEEeeCCCeEEEEecC-C--cEEEEecCCC
Q 013347          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~-dg~v~iw~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g--~v~iw~~~~~  175 (444)
                      .+ +++|+|+|+++++++. ++.|.+||..+ ++. .... ..+..+..+++|+|+++.++++..+ +  .|.+||+...
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~  118 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN  118 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence            35 8999999997777665 88999999987 444 3333 3455555559999998878744334 3  8999999743


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe-EEEEEcCCCCce-----ee
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-FTIWDVAQGLGT-----PI  249 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~-i~iwd~~~~~~~-----~~  249 (444)
                      +.                         ...+..+  ..+.+++|+|+|+++++++.+.+. |.+|++......     ..
T Consensus       119 ~~-------------------------~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~  171 (331)
T 3u4y_A          119 KF-------------------------ISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF  171 (331)
T ss_dssp             EE-------------------------EEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred             Ce-------------------------EEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence            22                         2223332  467899999999977777655337 999999864432     22


Q ss_pred             ecCCCCeEEEEEecCCCeEEE-EecCCcEEEEECCCCce---eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          250 RRGFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ......+..++|+|+|+++++ +..++.|++||+.+++.   .........+..++|+|+|++++++...+..+..|+..
T Consensus       172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            234466899999999997654 45688999999998876   44334556788999999999888776655566665542


Q ss_pred             cCCCCcCCCcCCCCcccccccccC----C----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGS----Q----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~----~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      ..           ....+..+..+    .    ....++|+|||++|++++.++     +.|.+||+....
T Consensus       252 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~  306 (331)
T 3u4y_A          252 SG-----------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-----RELKVFTISGKV  306 (331)
T ss_dssp             TT-----------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-----TEEEEEETTSCE
T ss_pred             CC-----------ceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-----CcEEEEEecCCc
Confidence            21           00001111111    1    235689999999998877663     799999998754

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.1e-22  Score=182.12  Aligned_cols=230  Identities=13%  Similarity=0.213  Sum_probs=164.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC-CCCeEEEEEeeCCCeEEEEec--CCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~~~~  177 (444)
                      .|.+++|+|+|++|++++ ++.|.+||+.+.++..... ..+ ...+.+++|+|+++.+++++.  ++..+||.++....
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            589999999999999976 8899999998622233332 344 478899999999888888883  35667776652221


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE-EEeeCCCeEEEEEcC--CCCceeeecCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA-SASYESSSFTIWDVA--QGLGTPIRRGFG  254 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~~i~iwd~~--~~~~~~~~~~~~  254 (444)
                      ..                        ..+..+  ..+..++|+|++++|+ +++.++ .+.+|++.  +++...+..+..
T Consensus       121 ~~------------------------~~~~~~--~~~~~~~~spdg~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A          121 TP------------------------RLMTKN--LPSYWHGWSPDGKSFTYCGIRDQ-VFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             CC------------------------EECCSS--SSEEEEEECTTSSEEEEEEEETT-EEEEEEEETTTCCEEECCCSSS
T ss_pred             ce------------------------EEeecC--CCccceEECCCCCEEEEEECCCC-ceEEEEEECCCCcceEcccCCC
Confidence            11                        112222  3588899999999887 566776 89999864  455555666778


Q ss_pred             CeEEEEEecCCCeEEEEe-cCCcEEEEECC--CCceeccccCCCceeEEEECCCCCEEEEEEcCC----------ceEEE
Q 013347          255 GLSILKWSPTGDYFFAAK-FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS----------LTLGS  321 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~----------~~~~~  321 (444)
                      .+.+++|+|++++|+.++ .++.+++|++.  ++....+..+...+.+++|+|+|++|+++....          ..++.
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence            899999999999887665 58888999875  444466677778899999999999988775532          23444


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                      |++...           ....+..+.+|. .+..++|+|||++|++++.+
T Consensus       254 ~d~~~~-----------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          254 MDMDGG-----------NVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EETTSC-----------SCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             EecCCC-----------CceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            443211           112233344555 78999999999999988876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=4.2e-22  Score=209.19  Aligned_cols=234  Identities=11%  Similarity=0.013  Sum_probs=164.4

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      +|...+.++.|+++ ..++++..++.++||.++..+..                        ...+..|  ..+..++|+
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~------------------------~~~l~~~--~~~~~~~~S  253 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKD------------------------LRKHTSF--TDYYPRHLN  253 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCS------------------------CEECCCC--CSSCEEEEE
T ss_pred             CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCc------------------------ceEecCC--CCcceeeEc
Confidence            45556666666665 33333444566667765422111                        1122333  246677999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeec-----------CCCCeEEEEEe-cCCCeEEEEecCCcEEEEECCCCcee
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRR-----------GFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                      |||++|+++. ++ .|.+||+.......+..           +...+.+++|+ |||++|++++ ++.|++|++.+++..
T Consensus       254 pDG~~la~~~-~~-~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          254 TDGRRILFSK-GG-SIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             ESSSCEEEEE-TT-EEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             CCCCEEEEEe-CC-EEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence            9999998874 76 99999995443332222           22368899999 9999998887 789999999988877


Q ss_pred             ccccCCC-ceeEEEECCCCCEEEEEEcCCceEE-EEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEE
Q 013347          289 PWSSTSG-FVTGATWDPEGRMILLAFAGSLTLG-SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA  365 (444)
Q Consensus       289 ~~~~~~~-~v~~~~~sp~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~  365 (444)
                      .+..+.. .+..++|+ +|+.++++.. +..++ .+++              .......+.++. .+..++|+|||++|+
T Consensus       331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~--------------~~~~~~~l~~~~~~~~~~~~SpDG~~la  394 (1045)
T 1k32_A          331 KVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDY--------------RTGKAEKFEENLGNVFAMGVDRNGKFAV  394 (1045)
T ss_dssp             ECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEET--------------TTCCEEECCCCCCSEEEEEECTTSSEEE
T ss_pred             EccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEEC--------------CCCCceEecCCccceeeeEECCCCCEEE
Confidence            7777777 89999999 9999987765 44444 4443              122233444555 899999999999999


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec----------cceeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS----------SGFCCTYP  435 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~----------~g~i~~~~  435 (444)
                      +++.+      +.|++||+.+++..     ..+.+|...+.+++|||||++     |+.+..          ++.|++|+
T Consensus       395 ~~~~~------~~v~~~d~~tg~~~-----~~~~~~~~~v~~~~~SpDG~~-----la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          395 VANDR------FEIMTVDLETGKPT-----VIERSREAMITDFTISDNSRF-----IAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             EEETT------SEEEEEETTTCCEE-----EEEECSSSCCCCEEECTTSCE-----EEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             EECCC------CeEEEEECCCCceE-----EeccCCCCCccceEECCCCCe-----EEEEecCccccccCCCCCeEEEEE
Confidence            99987      89999999988765     334578888999999999997     333333          25788887


Q ss_pred             e
Q 013347          436 L  436 (444)
Q Consensus       436 ~  436 (444)
                      +
T Consensus       459 ~  459 (1045)
T 1k32_A          459 M  459 (1045)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=1.2e-22  Score=189.77  Aligned_cols=287  Identities=11%  Similarity=0.030  Sum_probs=186.6

Q ss_pred             EEEecCCCeEEEEEC-CCe--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          105 VSWHQHKHIVAFISG-STQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       105 ~~~sp~g~~la~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      .+|||||++|++++. ++.  |.+||+.+ + ....++.++...+..+.|+|||+.|+.++.++.|++||+...+.... 
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g-~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~-  117 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-Q-VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV-  117 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT-C-EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE-
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC-C-ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee-
Confidence            689999999999887 674  77777765 3 33444456666666788999999999998889999999984432111 


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEE--EEccCCCeEEEEe----------------------eCCCeEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDGRYLASAS----------------------YESSSFT  237 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~~~~----------------------~d~~~i~  237 (444)
                                              +..+ ...+...  .++|++++++...                      .+. .|.
T Consensus       118 ------------------------~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  171 (388)
T 3pe7_A          118 ------------------------YQVP-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC-RLM  171 (388)
T ss_dssp             ------------------------EECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE-EEE
T ss_pred             ------------------------eech-hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc-eEE
Confidence                                    1122 1333333  3489999887432                      234 899


Q ss_pred             EEEcCCCCceeeecCCCCeEEEEEec-CCCeEEEEecC------CcEEEEECCCCceeccccCC--CceeEEEECCCCCE
Q 013347          238 IWDVAQGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSSTS--GFVTGATWDPEGRM  308 (444)
Q Consensus       238 iwd~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~--~~v~~~~~sp~g~~  308 (444)
                      +||+.+++...+..+...+..++|+| ||+.|+....+      ..|.++|..+++...+..+.  ..+..++|+|+|+.
T Consensus       172 ~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          172 RVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             EEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence            99999998877877788899999999 99998776653      37888998887766665544  35788999999998


Q ss_pred             EEEEEcC-Cce---EEEEEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCC---ccccc
Q 013347          309 ILLAFAG-SLT---LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGD---DIYKG  377 (444)
Q Consensus       309 l~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~---~~~d~  377 (444)
                      |++.... +..   ++.|++...           ....+..+.++.    ....+.|+|||+.|+....++.   ...+.
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g-----------~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETL-----------ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTC-----------CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             EEEEecCCCCCcceEEEEecCCC-----------ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            8665432 221   444443211           111122222211    1223479999998886543200   00127


Q ss_pred             eEEEEEcCCCCeEEEEEeeeeeCCCC-----------CCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347          378 LIAIYDARRTPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       378 ~i~vwd~~~~~~~~~~~~~~~~~~~~-----------~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                      .|++||+.+++..      .+..+..           .+.+++|||||++    ++.....+|...+|.+...+.
T Consensus       321 ~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~----l~~~s~~~g~~~l~~~~l~~~  385 (388)
T 3pe7_A          321 FLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ----ILFTSDVHGKPALYLATLPES  385 (388)
T ss_dssp             EEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCGG
T ss_pred             EEEEEeccCCceE------EeccccCcccccccccccCCCCccCCCCCCE----EEEEecCCCceeEEEEECChh
Confidence            8999999987654      2333333           4788999999986    344445678888887766554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.5e-20  Score=173.88  Aligned_cols=283  Identities=15%  Similarity=0.181  Sum_probs=184.9

Q ss_pred             CCeEEEEE----CCCeEEEEEccCC-CCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCCCccee
Q 013347          111 KHIVAFIS----GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAASV  181 (444)
Q Consensus       111 g~~la~~~----~dg~v~iw~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~~~~~~  181 (444)
                      ..++++|+    .++.|.+|.++.. ++....... +...+..++|+||++.+++++.+    +.|.+|+++....    
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g----   87 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG----   87 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT----
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC----
Confidence            34556664    4578999988753 333333322 67778889999998888888775    7999999874311    


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee----eecC-----
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----IRRG-----  252 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~----~~~~-----  252 (444)
                                       ....+.....+. ..+..+++  ++++|++++..++.|.+|++.......    ...+     
T Consensus        88 -----------------~~~~~~~~~~~~-~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~  147 (361)
T 3scy_A           88 -----------------TLHLLNTQKTMG-ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP  147 (361)
T ss_dssp             -----------------EEEEEEEEECSS-SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred             -----------------cEEEeeEeccCC-CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence                             112222333332 46777887  888888887544599999997543221    1111     


Q ss_pred             ------CCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCc-------e-------eccccCCCceeEEEECCCCCEEEE
Q 013347          253 ------FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT-------S-------EPWSSTSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       253 ------~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~-------~-------~~~~~~~~~v~~~~~sp~g~~l~~  311 (444)
                            ...+.+++|+|+|+++++++ .++.|++|++....       .       .........+..++|+|+|+++++
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence                  22357899999999775554 47899999887543       1       112234556789999999999988


Q ss_pred             EEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC-CCccccceEEEEEcC--CC
Q 013347          312 AFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG-GDDIYKGLIAIYDAR--RT  387 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d-~~~~~d~~i~vwd~~--~~  387 (444)
                      +...+..+..|++....      +.  ....+.....+. ....++|+|||++|+++..+ .     +.|.+|++.  ++
T Consensus       228 ~~~~~~~v~v~~~~~g~------~~--~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~-----~~i~v~~~~~~~g  294 (361)
T 3scy_A          228 INEIGGTVIAFRYADGM------LD--EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA-----DGVAIFKVDETNG  294 (361)
T ss_dssp             EETTTCEEEEEEEETTE------EE--EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS-----CEEEEEEECTTTC
T ss_pred             EcCCCCeEEEEEecCCc------eE--EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC-----CEEEEEEEcCCCC
Confidence            87677788888764210      00  001111122222 56799999999999777654 2     799999996  44


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeee
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  439 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~  439 (444)
                      +..   .+..+.. ...+.+++|+|||++    ++..+..++.|.+|.+...
T Consensus       295 ~~~---~~~~~~~-g~~~~~~~~spdg~~----l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          295 TLT---KVGYQLT-GIHPRNFIITPNGKY----LLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             CEE---EEEEEEC-SSCCCEEEECTTSCE----EEEEETTTTEEEEEEECTT
T ss_pred             cEE---EeeEecC-CCCCceEEECCCCCE----EEEEECCCCCEEEEEEECC
Confidence            432   2233444 567889999999987    3333446788988776543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.6e-22  Score=209.73  Aligned_cols=274  Identities=16%  Similarity=0.108  Sum_probs=198.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..+.+++|+++ .++++++.++.+.||.++..+.....+. .|. .+..++|+|||+.++++ .++.|++|++. .....
T Consensus       204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~-~~~l~  278 (1045)
T 1k32_A          204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD-TEKIE  278 (1045)
T ss_dssp             SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT-TCCEE
T ss_pred             CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC-ceEee
Confidence            36889999998 6666777889999999875444444442 443 46778999998777665 68999999984 22211


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-CeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-~v~  257 (444)
                      .+.... .         ..    ......| ...+.+++|+ |||++|++++ ++ .|.+|++..++...+..+.. .+.
T Consensus       279 ~l~~~~-~---------~~----~~~~~~~-~~~v~~~~~S~pdG~~la~~~-~~-~i~~~~~~~~~~~~~~~~~~~~~~  341 (1045)
T 1k32_A          279 KIEIGD-L---------ES----PEDRIIS-IPSKFAEDFSPLDGDLIAFVS-RG-QAFIQDVSGTYVLKVPEPLRIRYV  341 (1045)
T ss_dssp             ECCCCC-C---------CB----CCSEEEE-CGGGGEEEEEECGGGCEEEEE-TT-EEEEECTTSSBEEECSCCSCEEEE
T ss_pred             eeccCc-c---------cc----ccccccc-ccccceeeecCCCCCEEEEEE-cC-EEEEEcCCCCceEEccCCCcceEE
Confidence            111100 0         00    0001112 2478999999 9999999888 65 99999998887666666666 899


Q ss_pred             EEEEecCCCeEEEEecCCcEE-EEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFY-LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~-iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .++|+ ||+.|+.++.++.+. +||+.+++...+..+...+..++|+|+|++|+++.. +..++.|++.           
T Consensus       342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~-----------  408 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLE-----------  408 (1045)
T ss_dssp             EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETT-----------
T ss_pred             eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECC-----------
Confidence            99999 999999988888888 999998887666678888999999999999997754 4566666642           


Q ss_pred             CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCC----ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~----~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                        +........+|. .+.+++|||||++|++++.+.+    ...++.|++||+.+++.      ..+..|...+..++|+
T Consensus       409 --tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~~~~~~~~~s  480 (1045)
T 1k32_A          409 --TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTENSHDYAPAFD  480 (1045)
T ss_dssp             --TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSSSBEEEEEEC
T ss_pred             --CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCCcccCCceEc
Confidence              222333333566 7899999999999998876520    01125899999998753      2456677778889999


Q ss_pred             eCCCC
Q 013347          412 FHDKF  416 (444)
Q Consensus       412 pdg~~  416 (444)
                      |||++
T Consensus       481 pdG~~  485 (1045)
T 1k32_A          481 ADSKN  485 (1045)
T ss_dssp             TTSCE
T ss_pred             CCCCE
Confidence            99986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=5.4e-21  Score=175.89  Aligned_cols=250  Identities=12%  Similarity=0.097  Sum_probs=170.8

Q ss_pred             ceEEEEEecCCCeEEEEEC---CCeEEEEEccCCCCceeEEe-cCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCC
Q 013347          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP  175 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~---dg~v~iw~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~  175 (444)
                      .+..++|+|||+ |++++.   ++.|.+|++.. +....... ..+...+..++|+|+|+.+++++ .++.|.+|++...
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~  118 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD  118 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence            467799999999 555543   68999999975 33222211 34667889999999988888887 5699999999743


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeecc--------CCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC-CCCc
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--------NGEQITALSWGPDGRYLASASYESSSFTIWDVA-QGLG  246 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~-~~~~  246 (444)
                      +....+.                      .+...        ....+.+++|+|+|+.+++...++ .|.+|++. +++.
T Consensus       119 g~~~~~~----------------------~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~-~v~~~~~~~~g~~  175 (347)
T 3hfq_A          119 GALTLTD----------------------TVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD-KVYVYNVSDAGQL  175 (347)
T ss_dssp             SCEEEEE----------------------EEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT-EEEEEEECTTSCE
T ss_pred             CCeeecc----------------------eeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC-EEEEEEECCCCcE
Confidence            3322211                      11110        124588999999999444444455 99999998 4443


Q ss_pred             eeee---c-CCCCeEEEEEecCCCeEEE-EecCCcEEEEECCC--Ccee---ccccC------CCceeEEEECCCCCEEE
Q 013347          247 TPIR---R-GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNT--WTSE---PWSST------SGFVTGATWDPEGRMIL  310 (444)
Q Consensus       247 ~~~~---~-~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~--~~~~---~~~~~------~~~v~~~~~sp~g~~l~  310 (444)
                      ....   . ....+..++|+|||+++++ +..++.|.+|++..  ++..   .+...      ...+..++|+|+|++|+
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence            3221   1 2346788999999997755 55688999999874  4432   11111      14588999999999988


Q ss_pred             EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEE--EcCCC
Q 013347          311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIY--DARRT  387 (444)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw--d~~~~  387 (444)
                      ++...+..+..|++....          ....+..+..+. .+..++|+|||++|++++.+.     +.|.+|  |.+++
T Consensus       256 v~~~~~~~v~v~~~~~~g----------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~~~d~~tg  320 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADG----------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-----DNATLYARDLTSG  320 (347)
T ss_dssp             EEEETTTEEEEEEECGGG----------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-----TEEEEEEECTTTC
T ss_pred             EEeCCCCEEEEEEECCCC----------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-----CcEEEEEEeCCCC
Confidence            777767778888763210          123334444444 678999999999999888763     889999  55566


Q ss_pred             CeE
Q 013347          388 PLI  390 (444)
Q Consensus       388 ~~~  390 (444)
                      ++.
T Consensus       321 ~l~  323 (347)
T 3hfq_A          321 KLS  323 (347)
T ss_dssp             CEE
T ss_pred             eEE
Confidence            655

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.2e-20  Score=174.51  Aligned_cols=280  Identities=14%  Similarity=0.153  Sum_probs=179.6

Q ss_pred             cceEEEEEecCCCeEEEEECC----CeEEEEEccCC-CCceeEEe-cCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEec
Q 013347          100 VDLQGVSWHQHKHIVAFISGS----TQVIVRDYEDS-GKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~d----g~v~iw~~~~~-~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~  172 (444)
                      ..+..++|+|||++|++++.+    +.|.+|+++.. +....... ..+......+++  +++.++++.. ++.|.+|++
T Consensus        50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEB
T ss_pred             CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEe
Confidence            356779999999999998875    79999999864 32222221 234556777777  7677777764 689999999


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCc------
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG------  246 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~------  246 (444)
                      ...+....+..... ..+   .+..       ..+.+ ...+.+++|+|+|+++++++...+.|.+|++.....      
T Consensus       128 ~~~g~~~~~~~~~~-~~g---~~~~-------~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~  195 (361)
T 3scy_A          128 GQDGALLPASDVIE-FKG---SGPD-------KERQT-MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEK  195 (361)
T ss_dssp             CTTSCBCSCSEEEE-CCC---CCSC-------TTTCS-SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCC
T ss_pred             CCCCcCcccceeEE-ccC---CCCC-------ccccC-CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccc
Confidence            75443322211000 000   0000       00011 245688999999998877765334999999876542      


Q ss_pred             e-------e-eecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCceec------cccCCCceeEEEECCCCCEEEE
Q 013347          247 T-------P-IRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEP------WSSTSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       247 ~-------~-~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~------~~~~~~~v~~~~~sp~g~~l~~  311 (444)
                      .       . .......+..++|+|||+++++++ .++.|.+||+.+++...      ...+......++|+|+|++|++
T Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v  275 (361)
T 3scy_A          196 FLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA  275 (361)
T ss_dssp             CEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred             eeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence            1       1 223356688999999999887766 68999999998776522      1233455789999999999987


Q ss_pred             EEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc--CCCC
Q 013347          312 AFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTP  388 (444)
Q Consensus       312 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~  388 (444)
                      +... +..+..|++.....         ....+..+.....+..++|+|||++|++++.+.     +.|.+|++  ++++
T Consensus       276 ~~~~~~~~i~v~~~~~~~g---------~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d~~~g~  341 (361)
T 3scy_A          276 SNRLKADGVAIFKVDETNG---------TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-----NVIQIFERDQATGL  341 (361)
T ss_dssp             EECSSSCEEEEEEECTTTC---------CEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-----TEEEEEEECTTTCC
T ss_pred             ECCCCCCEEEEEEEcCCCC---------cEEEeeEecCCCCCceEEECCCCCEEEEEECCC-----CCEEEEEEECCCCc
Confidence            7766 66777777632100         112233333322678999999999999988543     88999654  4665


Q ss_pred             eEEEEEeeeeeCCCCCCcceeee
Q 013347          389 LISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       389 ~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      +....  ..  .+...+.|++|.
T Consensus       342 ~~~~~--~~--~~~~~p~~v~~~  360 (361)
T 3scy_A          342 LTDIK--KD--IKVDKPVCLKFV  360 (361)
T ss_dssp             EEECS--CC--EECSSEEEEEEE
T ss_pred             Eeecc--ee--eeCCCCeEEEEc
Confidence            54111  01  123346677765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.7e-22  Score=203.92  Aligned_cols=259  Identities=14%  Similarity=0.146  Sum_probs=173.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecC---------------CCCCeEEEEEeeCCCeEEEEec
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSD---------------SQRDVKVLEWRPNGGRSLSVGC  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~---------------~~~~v~~l~~s~~~~~ll~~~~  163 (444)
                      .+..+.|.  |..+++++.++ | +||+.+ ++.  .......               +...|.+++|+|| +.++++ .
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~t-g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKAN-GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-T   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-E
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCC-CcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-E
Confidence            35668888  66777777787 8 999988 444  3332211               0156999999999 776666 5


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      ++.|++||+.....                          ..+..+ ...+.+++|+|||++|+++ .++ .|++||+.+
T Consensus       100 ~~~i~~~d~~~~~~--------------------------~~l~~~-~~~~~~~~~SpdG~~la~~-~~~-~i~v~~~~~  150 (706)
T 2z3z_A          100 QGGLVGFDMLARKV--------------------------TYLFDT-NEETASLDFSPVGDRVAYV-RNH-NLYIARGGK  150 (706)
T ss_dssp             TTEEEEEETTTTEE--------------------------EEEECC-TTCCTTCEECTTSSEEEEE-ETT-EEEEEECBC
T ss_pred             CCEEEEEECCCCce--------------------------EEccCC-cccccCCcCCCCCCEEEEE-ECC-eEEEEecCc
Confidence            69999999973211                          112223 2568889999999999985 676 999999998


Q ss_pred             -----CCceeeecCC-CC--------------eEEEEEecCCCeEEEEe-------------------------------
Q 013347          244 -----GLGTPIRRGF-GG--------------LSILKWSPTGDYFFAAK-------------------------------  272 (444)
Q Consensus       244 -----~~~~~~~~~~-~~--------------v~~~~~sp~~~~l~~~~-------------------------------  272 (444)
                           ++...+.... ..              +.+++|+|||++|++++                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 7766544332 22              47899999999999887                               


Q ss_pred             --cCCcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccc
Q 013347          273 --FDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSL  346 (444)
Q Consensus       273 --~d~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (444)
                        .+..|++||+.+++...+.   .+...+.+++|+|+|++|+++..+. .....+.+|+..          +......+
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----------~g~~~~~~  300 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE----------TGRFVRTL  300 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT----------TCCEEEEE
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC----------CCceeeEE
Confidence              3467999999998864433   4667799999999999888765332 222333333321          11111222


Q ss_pred             c--cCC----ceeEEEECC--CCCEEEEEecCCCccccceEEEEEcC-CCCeEEEEEeeeeeCCCCCCcc-eeeeeCCCC
Q 013347          347 T--GSQ----GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKP-VAFSFHDKF  416 (444)
Q Consensus       347 ~--~~~----~v~~~~~sp--dg~~l~~~~~d~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~i~~-v~~spdg~~  416 (444)
                      .  .+.    .+..++|+|  ||++|++++.+      +.++||.+. .+...     ..+..+...+.. ++|+|||+.
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~------g~~~l~~~~~~~~~~-----~~l~~~~~~v~~~~~~spdg~~  369 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD------GWNHLYLYDTTGRLI-----RQVTKGEWEVTNFAGFDPKGTR  369 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEEEEEECTT------SSCEEEEEETTSCEE-----EECCCSSSCEEEEEEECTTSSE
T ss_pred             EEccCCCeECccCCceeecCCCCEEEEEEccC------CccEEEEEECCCCEE-----EecCCCCeEEEeeeEEcCCCCE
Confidence            1  111    246789999  99999888777      778888776 33332     345566666666 799999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4.7e-21  Score=181.07  Aligned_cols=320  Identities=11%  Similarity=0.086  Sum_probs=192.8

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCC---------Ccee----EEecCCCCCeEEEEEeeCCCeEE----EE
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---------KDAC----ILTSDSQRDVKVLEWRPNGGRSL----SV  161 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---------~~~~----~~~~~~~~~v~~l~~s~~~~~ll----~~  161 (444)
                      ...++.+++++++.++++++.++ ++||+.....         ....    .....+...|++++|+|+++.|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            44688999999999999998887 8898764210         0000    01124567899999999988887    44


Q ss_pred             ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-CCeEEEEeeCCCeEEEEE
Q 013347          162 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRYLASASYESSSFTIWD  240 (444)
Q Consensus       162 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~~i~iwd  240 (444)
                      +.|+.|+|||+........              .....+.....+.+|. ..|.+++|+|+ +++|++++.|+ +|++||
T Consensus       115 s~d~~v~iwd~~~~~~~~~--------------~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~las~s~Dg-~v~iwD  178 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAK--------------QQKRPFAYHKLLKDAG-GMVIDMKWNPTVPSMVAVCLADG-SIAVLQ  178 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTC--------------SSCCCSEEEECCCSGG-GSEEEEEECSSCTTEEEEEETTS-CEEEEE
T ss_pred             CCCceEEEEEccccccCCc--------------CCcceeeeeeccCCCC-CceEEEEECCCCCCEEEEEECCC-eEEEEE
Confidence            5589999999863200000              0000112334566675 89999999997 88999999998 999999


Q ss_pred             cCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc-------CCCceeEEEECCCCCEEEEE
Q 013347          241 VAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       241 ~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~  312 (444)
                      ++++.... ...|...|.+++|+|+|++|++|+.||+|++||++......+..       |...+.+++|++++.++++.
T Consensus       179 ~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~  258 (434)
T 2oit_A          179 VTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY  258 (434)
T ss_dssp             ESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred             cCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence            99875443 44577899999999999999999999999999998322222222       23479999999999888765


Q ss_pred             EcCCce------EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          313 FAGSLT------LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       313 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ...++.      +..+.+........ ..+.........+.+.. +-..+.+-++.+++++++..+     +.|.|....
T Consensus       259 ~~~dg~~~~~~~v~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s-----~dv~vl~~~  332 (434)
T 2oit_A          259 AAADGTLETSPDVVMALLPKKEEKHP-EIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS-----TEVSILARQ  332 (434)
T ss_dssp             EETTCCSSSCCEEEEEECCCTTTCCC-CEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC-----SBCEEEEEC
T ss_pred             ccCCCccCCCCceEEEEeccCCCCCC-cceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC-----CceeEEEec
Confidence            544422      44444432210000 00000000000001111 222333447778888887765     345555433


Q ss_pred             CCC--eEEEEE----eeeee----CCCCCCcceeeeeCC----------CCCCCceEEEEeccceeeeeeeeeecc
Q 013347          386 RTP--LISLSL----IGFIR----GPGDNPKPVAFSFHD----------KFKQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       386 ~~~--~~~~~~----~~~~~----~~~~~i~~v~~spdg----------~~~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                      ...  .....+    ...+.    +....+..+++.-..          .+...+.|.+-.++|.++.|-+.+..+
T Consensus       333 ~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~~~~  408 (434)
T 2oit_A          333 SDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQNP  408 (434)
T ss_dssp             TTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEECST
T ss_pred             CCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEecCc
Confidence            211  100000    00000    111112233332211          123446788888999999999998443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=5.9e-22  Score=200.38  Aligned_cols=278  Identities=15%  Similarity=0.128  Sum_probs=181.7

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCC---CeEEEEEeeCCCeEEEEec---------CCcEEEEe
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGC---------KGGICIWA  171 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~v~~l~~s~~~~~ll~~~~---------dg~v~iw~  171 (444)
                      +++|+|||++++ .+.|+.|++||+.+ ++..... ..|..   .+.+++|||||+.+++++.         ++.|++||
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~-g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIET-GQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSS-CCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCC-CcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            679999996555 45799999999987 4444333 33332   4899999999988888776         68999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~  251 (444)
                      +..+.....                       ..+    ...+..++|||||+.|+++. ++ .|++||+.+++...+..
T Consensus        97 ~~~g~~~~~-----------------------~~l----~~~~~~~~~SPDG~~la~~~-~~-~i~~~~~~~g~~~~l~~  147 (719)
T 1z68_A           97 LSNGEFVRG-----------------------NEL----PRPIQYLCWSPVGSKLAYVY-QN-NIYLKQRPGDPPFQITF  147 (719)
T ss_dssp             TTTTEECCS-----------------------SCC----CSSBCCEEECSSTTCEEEEE-TT-EEEEESSTTSCCEECCC
T ss_pred             CCCCccccc-----------------------eec----CcccccceECCCCCEEEEEE-CC-eEEEEeCCCCCcEEEec
Confidence            984322000                       001    14578899999999999885 66 99999999887765432


Q ss_pred             C--CCCe-----------------EEEEEecCCCeEEEEecCC----------------------------------cEE
Q 013347          252 G--FGGL-----------------SILKWSPTGDYFFAAKFDG----------------------------------TFY  278 (444)
Q Consensus       252 ~--~~~v-----------------~~~~~sp~~~~l~~~~~d~----------------------------------~v~  278 (444)
                      .  ...+                 .+++|+|||++|++++.|.                                  .|+
T Consensus       148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~  227 (719)
T 1z68_A          148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF  227 (719)
T ss_dssp             CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence            1  2212                 4899999999999887552                                  788


Q ss_pred             EEECCCCcee---c------cccCCCceeEEEECCCCCEEEEEEcCCc---eEEEEEeec-CCCCcCCCcCCCCcccccc
Q 013347          279 LWETNTWTSE---P------WSSTSGFVTGATWDPEGRMILLAFAGSL---TLGSIHFAS-KPPSLDAHLLPVDLPDIVS  345 (444)
Q Consensus       279 iwd~~~~~~~---~------~~~~~~~v~~~~~sp~g~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  345 (444)
                      +||+.+++..   .      +..|...+.+++|+||++++++..+...   .++.+++.+ ..          +......
T Consensus       228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~g~~~~~  297 (719)
T 1z68_A          228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ----------TWDCPKT  297 (719)
T ss_dssp             EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS----------SEECCGG
T ss_pred             EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC----------CCceEEE
Confidence            9999987642   1      2357788999999999877665433222   244444110 10          2222333


Q ss_pred             c----ccCC-cee-----EEEECCCCCEEEEE-e-cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          346 L----TGSQ-GIE-----KIAWDASGERLAVS-Y-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       346 ~----~~~~-~v~-----~~~~spdg~~l~~~-~-~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      +    .++. .+.     .+.|+|||+.|+.. + .++    ...|.+|++.+++..      .+..+...+..+.++ |
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g----~~~l~~~~~~~~~~~------~lt~~~~~v~~~~~~-d  366 (719)
T 1z68_A          298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG----YKHIHYIKDTVENAI------QITSGKWEAINIFRV-T  366 (719)
T ss_dssp             GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS----CEEEEEESSCSTTCE------ECSCSSSCEEEEEEE-C
T ss_pred             EecccccCCceEccccCCccEECCCCCeEEEEEEccCC----ceEEEEEECCCCceE------ecccCceEEEEEEEE-e
Confidence            3    2444 555     78999999976653 2 331    157888888776632      334444456677777 7


Q ss_pred             CCCCCCceEEEEec----cceeeeeeeee
Q 013347          414 DKFKQGPLLSVCWS----SGFCCTYPLIF  438 (444)
Q Consensus       414 g~~~~~~~l~~~~~----~g~i~~~~~~~  438 (444)
                      |+.    ++..+..    .+.+.+|.+..
T Consensus       367 ~~~----i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          367 QDS----LFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SSE----EEEEESCGGGCTTCBEEEEEEC
T ss_pred             CCE----EEEEEecCCCCCceEEEEEEeC
Confidence            664    2333332    35666665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=6.1e-21  Score=175.36  Aligned_cols=235  Identities=11%  Similarity=0.100  Sum_probs=166.0

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceee
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~  182 (444)
                      .++++++++++++++.++.|.+||..+ ++....+..+....+..++|+|+++.+++++ .++.|.+||+.+.+....  
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~--   80 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH--   80 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE--
Confidence            456788999999999999999999987 4444444323323678999999987776665 469999999974332221  


Q ss_pred             ccccccccccccCCCCceEEEEEeeccC-----CCceEEEEEccCCCeEEEEeeC------------CCeEEEEEcCCCC
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQN-----GEQITALSWGPDGRYLASASYE------------SSSFTIWDVAQGL  245 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d------------~~~i~iwd~~~~~  245 (444)
                                             +....     ...+.+++|+|+|++|++++.+            + .|.+||+.+++
T Consensus        81 -----------------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~  136 (349)
T 1jmx_B           81 -----------------------ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP-RLEVFSTADGL  136 (349)
T ss_dssp             -----------------------EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEEGGGGG
T ss_pred             -----------------------EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCC-eEEEEECCCcc
Confidence                                   21111     1247889999999999998865            6 99999998854


Q ss_pred             c---eeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cccC----------------------------
Q 013347          246 G---TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSST----------------------------  293 (444)
Q Consensus       246 ~---~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~----------------------------  293 (444)
                      .   .....+...+.+++|+|+|+ +++++  +.|++||+.+++... +..+                            
T Consensus       137 ~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          137 EAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             GBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             ccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence            3   33344556788999999999 65554  349999998877532 2111                            


Q ss_pred             ----------------------------------------CCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          294 ----------------------------------------SGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       294 ----------------------------------------~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                                                              ...+.+++|+| ++++++++   ++.+..|++.       
T Consensus       214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~-------  283 (349)
T 1jmx_B          214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLK-------  283 (349)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETT-------
T ss_pred             eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECc-------
Confidence                                                    01345677889 99998876   3566666642       


Q ss_pred             CCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          333 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                            +.+.+..+.....+.+++|+|||++|++++.+      +.|++||+++++.+
T Consensus       284 ------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          284 ------QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF------NDLAVFNPDTLEKV  329 (349)
T ss_dssp             ------TTEEEEEEECSSCCCEEEECSSSSCEEEESBS------SEEEEEETTTTEEE
T ss_pred             ------cCeEEEEEcCCCCccceEECCCCCEEEEecCC------CeEEEEecccccee
Confidence                  22333344433367899999999999887666      89999999987765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=3.3e-21  Score=176.24  Aligned_cols=236  Identities=13%  Similarity=0.057  Sum_probs=168.3

Q ss_pred             eEEEEEecCCCeEEEE-ECCCeEEEEEccCCCCceeEEecCC----CCCeEEEEEeeCCCeEEEEe------------cC
Q 013347          102 LQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDS----QRDVKVLEWRPNGGRSLSVG------------CK  164 (444)
Q Consensus       102 v~~~~~sp~g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~~ll~~~------------~d  164 (444)
                      +.+++|+|+|++++++ ..++.|.+||+.+ ++....+...+    ...+.+++|+|+++.++++.            .+
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            6789999999876554 4678999999987 44444443232    22677899999988887775            46


Q ss_pred             CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG  244 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~  244 (444)
                      +.|.+||+...+.                         ...+...  ..+.+++|+|+|++|+++  ++ .|.+||+.++
T Consensus       115 ~~i~v~d~~~~~~-------------------------~~~~~~~--~~~~~~~~s~dg~~l~~~--~~-~i~~~d~~~~  164 (337)
T 1pby_B          115 TRVALYDAETLSR-------------------------RKAFEAP--RQITMLAWARDGSKLYGL--GR-DLHVMDPEAG  164 (337)
T ss_dssp             CEEEEEETTTTEE-------------------------EEEEECC--SSCCCEEECTTSSCEEEE--SS-SEEEEETTTT
T ss_pred             ceEEEEECCCCcE-------------------------EEEEeCC--CCcceeEECCCCCEEEEe--CC-eEEEEECCCC
Confidence            9999999973322                         2222221  467889999999988887  55 8999999988


Q ss_pred             CceeeecCCCCeEEEEEecCCCeEEEEecC-C-----------------------cEEEEECCCCcee--ccccCCCcee
Q 013347          245 LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-G-----------------------TFYLWETNTWTSE--PWSSTSGFVT  298 (444)
Q Consensus       245 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-----------------------~v~iwd~~~~~~~--~~~~~~~~v~  298 (444)
                      +.............+.|+|+++.++..+.. +                       .|.+||+.+++..  .+..+...+.
T Consensus       165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            766544332211234789999877544432 2                       4689999998764  2335666788


Q ss_pred             EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccce
Q 013347          299 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL  378 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~  378 (444)
                      +++|+|+|++++++   +..+..|++.             +.+.+..+..+..+.+++|+|||++|++++.+      +.
T Consensus       245 ~~~~s~dg~~l~~~---~~~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~  302 (337)
T 1pby_B          245 STAVNPAKTRAFGA---YNVLESFDLE-------------KNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL------GD  302 (337)
T ss_dssp             EEEECTTSSEEEEE---ESEEEEEETT-------------TTEEEEEEECSSCCCEEEECTTSCEEEEESBS------SE
T ss_pred             eEEECCCCCEEEEe---CCeEEEEECC-------------CCcCcceecCCCceeeEEECCCCCEEEEEcCC------Cc
Confidence            99999999998877   3556666642             22333444444467899999999999998766      89


Q ss_pred             EEEEEcCCCCeE
Q 013347          379 IAIYDARRTPLI  390 (444)
Q Consensus       379 i~vwd~~~~~~~  390 (444)
                      |++||+.+++.+
T Consensus       303 i~v~d~~~~~~~  314 (337)
T 1pby_B          303 LAAYDAETLEKK  314 (337)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECcCCcEE
Confidence            999999998766

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=8.5e-21  Score=191.90  Aligned_cols=280  Identities=15%  Similarity=0.167  Sum_probs=177.4

Q ss_pred             ceEEEEEecCCCeEEEEEC---------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347          101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~  171 (444)
                      .+.+++|||||++||+++.         ++.|++||+.+ ++.....  .....+..++|||||+.++++ .++.|++|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-g~~~~~~--~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-GEFVRGN--ELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECCSS--CCCSSBCCEEECSSTTCEEEE-ETTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-Cccccce--ecCcccccceECCCCCEEEEE-ECCeEEEEe
Confidence            4889999999999999876         68999999987 3321000  112568899999998777766 588999999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccC--------CCceEEEEEccCCCeEEEEeeCCC---------
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS---------  234 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~---------  234 (444)
                      +..+........+..            .    ..+.++.        .....+++|||||++|++++.|.+         
T Consensus       137 ~~~g~~~~l~~~~~~------------~----~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          137 RPGDPPFQITFNGRE------------N----KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             STTSCCEECCCCCBT------------T----TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             CCCCCcEEEecCCCc------------C----CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence            985443221111100            0    0011221        012258999999999999886521         


Q ss_pred             ------------------------eEEEEEcCCCCce---ee------ecCCCCeEEEEEecCCCeEEEEecC----CcE
Q 013347          235 ------------------------SFTIWDVAQGLGT---PI------RRGFGGLSILKWSPTGDYFFAAKFD----GTF  277 (444)
Q Consensus       235 ------------------------~i~iwd~~~~~~~---~~------~~~~~~v~~~~~sp~~~~l~~~~~d----~~v  277 (444)
                                              .|++||+.+++..   .+      ..+...+..++|+||++++++....    ..|
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l  280 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL  280 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence                                    6889999887642   22      2356678999999998776664432    248


Q ss_pred             EEEE----CCCCceeccc-----cCCCcee-----EEEECCCCCEEEE-EEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347          278 YLWE----TNTWTSEPWS-----STSGFVT-----GATWDPEGRMILL-AFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  342 (444)
Q Consensus       278 ~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~sp~g~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      .+||    +.+++...+.     .+...+.     .+.|+|+|+.+++ ....++.. .+.+++.           ....
T Consensus       281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~-~l~~~~~-----------~~~~  348 (719)
T 1z68_A          281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK-HIHYIKD-----------TVEN  348 (719)
T ss_dssp             EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE-EEEEESS-----------CSTT
T ss_pred             EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce-EEEEEEC-----------CCCc
Confidence            8999    8887765443     5666676     8999999997765 33343432 2222221           2222


Q ss_pred             ccccccCC-ceeEEEECCCCCEEEEEecC--CCccccceEEEEEcCC--CCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          343 IVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARR--TPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       343 ~~~~~~~~-~v~~~~~spdg~~l~~~~~d--~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ...+..+. .+..+.++ +++.|+..+.+  ..   ++.+++|.+..  +......+...+.+|...+..+.|||||++
T Consensus       349 ~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~  423 (719)
T 1z68_A          349 AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEY---PGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY  423 (719)
T ss_dssp             CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGC---TTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred             eEecccCceEEEEEEEE-eCCEEEEEEecCCCC---CceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence            34455555 67777777 88887777653  11   16788887753  321101111112235566778999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=3.4e-19  Score=164.97  Aligned_cols=287  Identities=11%  Similarity=0.103  Sum_probs=179.7

Q ss_pred             eEEEEECC--CeEEEEEccCC-CCceeEEe--cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccc
Q 013347          113 IVAFISGS--TQVIVRDYEDS-GKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS  187 (444)
Q Consensus       113 ~la~~~~d--g~v~iw~~~~~-~~~~~~~~--~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~  187 (444)
                      ++++|+..  +.|.+|+++.. +.......  ......+..++|+|+++.+++++.+ .|.+|++...+....       
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-------   75 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-------   75 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-------
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-------
Confidence            35566643  56888877542 32222211  1234568889999998778777777 999999861111110       


Q ss_pred             cccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe--EEEEe-------------eCCCeEEEEEcCC-CCcee-ee
Q 013347          188 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY--LASAS-------------YESSSFTIWDVAQ-GLGTP-IR  250 (444)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--l~~~~-------------~d~~~i~iwd~~~-~~~~~-~~  250 (444)
                                     ......+  +.+.+++|+|+|++  ++++.             .++ .+.+|++.. ++... +.
T Consensus        76 ---------------~~~~~~~--g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g-~v~v~~~~~~g~~~~~~~  137 (365)
T 1jof_A           76 ---------------EASHPIG--GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG-YGNVFSVSETGKLEKNVQ  137 (365)
T ss_dssp             ---------------EEEEECC--SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC-EEEEEEECTTCCEEEEEE
T ss_pred             ---------------eeEeecC--CCCccEEECCCCCEEEEEEecCCcceeccceeecCCc-eEEEEccCCCCcCcceEe
Confidence                           0111111  23556899999995  44543             466 999999974 54432 22


Q ss_pred             ----cCCCCeEEEEEecCCCeEEEEec-CCcEEEEECC-CCceec---cc--cCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          251 ----RGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN-TWTSEP---WS--STSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       251 ----~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~-~~~~~~---~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                          .+...+.+++|+|||++++++.. ++.|++||+. +++...   +.  .+...+..++|+|+|++++++...+..+
T Consensus       138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v  217 (365)
T 1jof_A          138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRI  217 (365)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeE
Confidence                24567999999999998877654 6799999998 676532   22  2356789999999999998887666777


Q ss_pred             EEEEeecCCCCcCCCcCCCCccccccc----ccCC-------ceeEEE-ECCCCCEEEEEecCCCccccceEEEEEcC-C
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSL----TGSQ-------GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDAR-R  386 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~v~~~~-~spdg~~l~~~~~d~~~~~d~~i~vwd~~-~  386 (444)
                      ..|++......+..     ....+..+    .++.       .+..++ |+|||++|++++.+.+....++|.+|++. +
T Consensus       218 ~v~~~~~~~g~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~  292 (365)
T 1jof_A          218 CEYVIDPATHMPVY-----THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             EEEEECTTTCCEEE-----EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             EEEEEeCCCCcEEE-----ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence            77765321100000     00011111    1222       478999 99999999887754210001289999996 5


Q ss_pred             CCeEEEEEeeeeeCCCCCCcceeeee---CCCCCCCceEEEEe-ccceeeeeeee
Q 013347          387 TPLISLSLIGFIRGPGDNPKPVAFSF---HDKFKQGPLLSVCW-SSGFCCTYPLI  437 (444)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~i~~v~~sp---dg~~~~~~~l~~~~-~~g~i~~~~~~  437 (444)
                      +++...  ...+..+...+..++|+|   ||++     |.++. .++.|.+|++.
T Consensus       293 g~~~~~--~~~~~~~~~~~~~~a~sp~~~dg~~-----l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          293 GSIEKQ--LFLSPTPTSGGHSNAVSPCPWSDEW-----MAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             SCEEEE--EEEEECSSCCTTCCCEEECTTCTTE-----EEEECSSSCEEEEEEEE
T ss_pred             CCEEEe--eeeeecCCCCcccceecCCCcCCCE-----EEEEEcCCCeEEEEEEc
Confidence            554311  112344556678999999   7876     55554 46899988764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=1.1e-19  Score=184.04  Aligned_cols=246  Identities=15%  Similarity=0.175  Sum_probs=165.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCC-----eEEEEEeeCCCeEEEEecC---------CcE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD-----VKVLEWRPNGGRSLSVGCK---------GGI  167 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-----v~~l~~s~~~~~ll~~~~d---------g~v  167 (444)
                      ..+++|+|||++++++  |+.|++|++.+ ++...++ .+|...     ...++|||||+++++++.+         +.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFL-ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEE-CTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCC-CceEEEE-echhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            5578999999988885  99999999997 4444443 455432     2448899998888887765         567


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      .+||+.+++.                          ..+..+. ..+..++|||||+.|+.+. ++ .|++|++.+++..
T Consensus        95 ~~~d~~~~~~--------------------------~~l~~~~-~~~~~~~~SPdG~~la~~~-~~-~i~~~~~~~~~~~  145 (740)
T 4a5s_A           95 DIYDLNKRQL--------------------------ITEERIP-NNTQWVTWSPVGHKLAYVW-NN-DIYVKIEPNLPSY  145 (740)
T ss_dssp             EEEETTTTEE--------------------------CCSSCCC-TTEEEEEECSSTTCEEEEE-TT-EEEEESSTTSCCE
T ss_pred             EEEECCCCcE--------------------------EEcccCC-CcceeeEECCCCCEEEEEE-CC-eEEEEECCCCceE
Confidence            7999984321                          1133333 6799999999999999885 55 8999999988766


Q ss_pred             eeecC--CCCe-----------------EEEEEecCCCeEEEEecCC---------------------------------
Q 013347          248 PIRRG--FGGL-----------------SILKWSPTGDYFFAAKFDG---------------------------------  275 (444)
Q Consensus       248 ~~~~~--~~~v-----------------~~~~~sp~~~~l~~~~~d~---------------------------------  275 (444)
                      .+...  ...+                 ..+.|||||++|+.++.|.                                 
T Consensus       146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~  225 (740)
T 4a5s_A          146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN  225 (740)
T ss_dssp             ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred             EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence            54432  1222                 3589999999998775321                                 


Q ss_pred             ---cEEEEECCC---C---ceeccc------cCCCceeEEEECCCCCEEEEEEcCCc---eEEEEEeecCCCCcCCCcCC
Q 013347          276 ---TFYLWETNT---W---TSEPWS------STSGFVTGATWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       276 ---~v~iwd~~~---~---~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  337 (444)
                         +|++||+.+   +   +...+.      ++...+..++|+|||+.++.......   .++.+++.......      
T Consensus       226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~------  299 (740)
T 4a5s_A          226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW------  299 (740)
T ss_dssp             CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE------
T ss_pred             CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc------
Confidence               588899998   7   443333      37778999999999997776544333   34444443210000      


Q ss_pred             CCccccccc--ccCC-ce-----eEEEECCCCCEEE-EEecCCCccccceEEEEEcCCCCeE
Q 013347          338 VDLPDIVSL--TGSQ-GI-----EKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       338 ~~~~~~~~~--~~~~-~v-----~~~~~spdg~~l~-~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                       ....+..+  ..+. .|     ..++|+|||+.|+ ..+..+..   ..|++||+.+++..
T Consensus       300 -~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~---~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          300 -NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY---RHICYFQIDKKDCT  357 (740)
T ss_dssp             -EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC---EEEEEEETTCSSCE
T ss_pred             -ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc---eEEEEEECCCCceE
Confidence             00011222  2233 33     3789999999887 66644322   68999999876654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=3.5e-20  Score=182.69  Aligned_cols=232  Identities=13%  Similarity=0.121  Sum_probs=163.4

Q ss_pred             CCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347          143 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (444)
                      ..+|++++|+|||+.+++++. +|+++||+++. +..                         ..+..++...+..++|+|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-g~~-------------------------~~lt~~~~~~~~~~~~sp   74 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-GET-------------------------VKLNREPINSVLDPHYGV   74 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEET-TEE-------------------------EECCSSCCSEECEECTTC
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcC-CCc-------------------------EeeecccccccccccCCC
Confidence            557999999999999988887 89999999852 211                         223333335789999999


Q ss_pred             CCCeEEEEee---CCCeEEEEEcCC---CCceeeecCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccccCC
Q 013347          222 DGRYLASASY---ESSSFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWSSTS  294 (444)
Q Consensus       222 ~~~~l~~~~~---d~~~i~iwd~~~---~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~  294 (444)
                      | +.+++++.   +. ...+|.+..   +....+ .....+...+|+|+++.+ ++.+.++.+.+||+.+++...+..+.
T Consensus        75 d-~~l~~~~~~~g~~-~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~  151 (582)
T 3o4h_A           75 G-RVILVRDVSKGAE-QHALFKVNTSRPGEEQRL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP  151 (582)
T ss_dssp             S-EEEEEEECSTTSC-CEEEEEEETTSTTCCEEC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred             C-eEEEEeccCCCCc-ceEEEEEeccCCCccccc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence            9 77777665   33 566665543   222322 233345577899998643 34444555669999998876665444


Q ss_pred             CceeEEEECCCCCEEEEEEcCC---ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecC
Q 013347          295 GFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                      .  .+++|+|||++|+++..+.   ..++.+++              .....+.+..+. .+..++|||||++|+++..+
T Consensus       152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~--------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~  215 (582)
T 3o4h_A          152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL--------------SSGGLRVFDSGEGSFSSASISPGMKVTAGLETA  215 (582)
T ss_dssp             S--CEEEEEEETTEEEEEEEEETTEEEEEEEET--------------TTCCCEEECCSSCEEEEEEECTTSCEEEEEECS
T ss_pred             C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC--------------CCCCceEeecCCCccccceECCCCCEEEEccCC
Confidence            4  8899999999999665432   23444432              223344666666 78999999999999976665


Q ss_pred             CCccccc--eEEEEEcCCCCeEEEEEeeeeeCCCCCCccee--------eeeCCCCCCCceEEEEeccceeeeeee
Q 013347          371 GDDIYKG--LIAIYDARRTPLISLSLIGFIRGPGDNPKPVA--------FSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       371 ~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~--------~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                            +  .|++||+.+++..      .+.+|...+..++        |||||+     ++..+..+|++.+|.+
T Consensus       216 ------~~~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~spdg~-----~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          216 ------REARLVTVDPRDGSVE------DLELPSKDFSSYRPTAITWLGYLPDGR-----LAVVARREGRSAVFID  274 (582)
T ss_dssp             ------SCEEEEEECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEECTTSC-----EEEEEEETTEEEEEET
T ss_pred             ------CeeEEEEEcCCCCcEE------EccCCCcChhhhhhccccceeEcCCCc-----EEEEEEcCCcEEEEEE
Confidence                  6  8999999987653      3456777788888        999994     4677778899988876

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=2.8e-19  Score=164.61  Aligned_cols=228  Identities=13%  Similarity=0.096  Sum_probs=167.0

Q ss_pred             ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCC--------CeEEEEEeeCCCeEEEEec--CCcEEE
Q 013347          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQR--------DVKVLEWRPNGGRSLSVGC--KGGICI  169 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~--------~v~~l~~s~~~~~ll~~~~--dg~v~i  169 (444)
                      .+.+++|+|+|+++++++ .++.|.+||..+ ++....+..++..        .+.+++|+|+++.+++++.  ++.|.+
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKT-GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCC-CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            467899999999666554 579999999987 4544444322222        2788999999888877763  688999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      ||....+                         ....+..+ ...+.+++|+|+|+++++++.++ .|.+||+.+++....
T Consensus       169 ~d~~~~~-------------------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~-~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          169 VDGGNIK-------------------------LKTAIQNT-GKMSTGLALDSEGKRLYTTNADG-ELITIDTADNKILSR  221 (353)
T ss_dssp             EETTTTE-------------------------EEEEECCC-CTTCCCCEEETTTTEEEEECTTS-EEEEEETTTTEEEEE
T ss_pred             EcCCCCc-------------------------eEEEecCC-CCccceEEECCCCCEEEEEcCCC-eEEEEECCCCeEEEE
Confidence            9987332                         22333322 24578899999999999998887 999999998876654


Q ss_pred             ec-----CCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          250 RR-----GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       250 ~~-----~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      ..     +...+..++|+|+++++++++. ++.|.+||+.+++......... ...++|+|+|++++++...++.+..|+
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            33     2456788999999998766654 5899999999988743222222 267999999998888877777888777


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecC
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d  370 (444)
                      ..             +.+.+..+.....+..++|+|||++|+++..+
T Consensus       301 ~~-------------~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          301 AK-------------SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TT-------------TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CC-------------CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            52             23344445544578899999999988877665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=9.6e-20  Score=168.69  Aligned_cols=249  Identities=12%  Similarity=0.088  Sum_probs=164.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEcc-CCCCceeEEecCCCCCeEEEEEeeCCCe-EEEEe--------------cC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE-DSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVG--------------CK  164 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~-~~~~~~~~~~~~~~~~v~~l~~s~~~~~-ll~~~--------------~d  164 (444)
                      .+..++|+|||++|++++.+ .|.+|++. + ++..........+.+..++|+|+|+. +++++              .+
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            47789999999999988877 99999997 4 44433222111123566899999775 33332              57


Q ss_pred             CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC-C
Q 013347          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA-Q  243 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~-~  243 (444)
                      +.+.+|+++..+....                     ....+.......+.+++|+|||++|+++....+.|.+||+. +
T Consensus       119 g~v~v~~~~~~g~~~~---------------------~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~  177 (365)
T 1jof_A          119 GYGNVFSVSETGKLEK---------------------NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             CEEEEEEECTTCCEEE---------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEccCCCCcCcc---------------------eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence            8999999974332211                     11111111235789999999999988776533399999998 6


Q ss_pred             CCceee--ec---CCCCeEEEEEecCCCeEEEEec-CCcEEEEECC--CCcee-------cccc----CCC------cee
Q 013347          244 GLGTPI--RR---GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETN--TWTSE-------PWSS----TSG------FVT  298 (444)
Q Consensus       244 ~~~~~~--~~---~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~--~~~~~-------~~~~----~~~------~v~  298 (444)
                      ++...+  ..   +...+..++|+|||+++++++. ++.|.+|++.  +++..       .+..    +..      .+.
T Consensus       178 g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  257 (365)
T 1jof_A          178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRA  257 (365)
T ss_dssp             SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred             CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccc
Confidence            654322  11   2567899999999999977765 6899999765  45431       1211    122      588


Q ss_pred             EEE-ECCCCCEEEEEEcCCc-----eEEEEEeecCCCCcCCCcCCCCccccc-ccccCC-ceeEEEECC---CCCEEEEE
Q 013347          299 GAT-WDPEGRMILLAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQ-GIEKIAWDA---SGERLAVS  367 (444)
Q Consensus       299 ~~~-~sp~g~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~sp---dg~~l~~~  367 (444)
                      .++ |+|+|++|+++.....     .+..|++...     +     ....+. ....+. .+..++|+|   ||++|+++
T Consensus       258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~-----g-----~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-----G-----SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-----S-----CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC-----C-----CEEEeeeeeecCCCCcccceecCCCcCCCEEEEE
Confidence            999 9999999887654333     5666665310     0     011111 122223 567889999   89999998


Q ss_pred             ecCCCccccceEEEEEcCCC
Q 013347          368 YKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       368 ~~d~~~~~d~~i~vwd~~~~  387 (444)
                      +.++     +.|++|+++..
T Consensus       328 ~~~~-----~~v~v~~~~~~  342 (365)
T 1jof_A          328 DDQE-----GWLEIYRWKDE  342 (365)
T ss_dssp             CSSS-----CEEEEEEEETT
T ss_pred             EcCC-----CeEEEEEEchh
Confidence            8653     89999999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=7e-20  Score=171.41  Aligned_cols=301  Identities=10%  Similarity=-0.008  Sum_probs=181.6

Q ss_pred             eEEEEEecCCCeEEEEECC---CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      +.+++|||||++|++....   ..|.+|++.+ ++ ...+..++......+.|+|||+.|+.++.++.|++|++..... 
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-TE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCC-Cc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-
Confidence            5567899999999887643   3677778775 33 3333333332233478999998898888889999999874432 


Q ss_pred             ceeecccc--ccccc-cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-----eCCCeEEEEEcCCCCceeee
Q 013347          179 ASVRSGAA--SFLGA-LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-----YESSSFTIWDVAQGLGTPIR  250 (444)
Q Consensus       179 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-----~d~~~i~iwd~~~~~~~~~~  250 (444)
                      ..+.....  .+.+. +..........         .....+.|+|+++.++...     .+. .|.+||+.+++...+.
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~---------~~~~~~~~spdg~~~~~~~~~~~~~~~-~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVG---------IEILKRDWQPLTSWEKFAEFYHTNPTC-RLIKVDIETGELEVIH  184 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEE---------EEEEGGGCCCCCSHHHHHHHHHTCCCE-EEEEEETTTCCEEEEE
T ss_pred             EEEEecccccCCCCCEEEeccCCcccc---------ccccccccCCCCcceeeeeeccCCCcc-eEEEEECCCCcEEeec
Confidence            22221100  00000 00000000000         0001145788998877653     444 8999999998877777


Q ss_pred             cCCCCeEEEEEec-CCCeEEEEecC------CcEEEEECCCCceeccccC--CCceeEEEECCCCCEEEEEEcCC----c
Q 013347          251 RGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGS----L  317 (444)
Q Consensus       251 ~~~~~v~~~~~sp-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~~~----~  317 (444)
                      .+...+..+.|+| +++.|+..+.+      ..|.+||+.+++...+..+  ...+..++|+|+|++|++.....    .
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence            7778899999999 78877665543      4689999987766554443  23578899999999877654321    1


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC-CCCEEEEEecCCC----------ccccceEEEEEcCC
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGD----------DIYKGLIAIYDARR  386 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~d~~----------~~~d~~i~vwd~~~  386 (444)
                      .++.+++.              ......+....... +.|+| ||++|++++.+..          ...+..|++||+.+
T Consensus       265 ~l~~~d~~--------------~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          265 VIYKANPE--------------TLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EEEEECTT--------------TCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             eEEEEECC--------------CCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            14444321              11111122111223 88999 9998887653200          00127899999988


Q ss_pred             CCeEEEEEeeeeeCCCC-----------CCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeec
Q 013347          387 TPLISLSLIGFIRGPGD-----------NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  440 (444)
Q Consensus       387 ~~~~~~~~~~~~~~~~~-----------~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~  440 (444)
                      ++..      .+..+..           .+..++|+|||++    ++.....+|...+|.+...+
T Consensus       330 ~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~s~~~~~~~l~~~~~~~  384 (396)
T 3c5m_A          330 KSAQ------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDG----VLFTSDFEGVPAIYIADVPE  384 (396)
T ss_dssp             TBCC------EEEECCCCCCCBTTBSSTTCCCCEECTTSSE----EEEEECTTSSCEEEEEECCT
T ss_pred             CceE------EccCCCCccccccccccCCCCCceEccCCCe----EEEEecCCCCceEEEEEEcc
Confidence            7653      2222332           2567899999986    33344456776666665443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=5.7e-19  Score=162.15  Aligned_cols=241  Identities=10%  Similarity=-0.051  Sum_probs=156.1

Q ss_pred             EEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347          148 VLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA  227 (444)
Q Consensus       148 ~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  227 (444)
                      .+++++++..+++++.++.|++||..+.+                         ....+..+....+..++|+|+|++++
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~s~dg~~~~   58 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDT-------------------------VYKSCVMPDKFGPGTAMMAPDNRTAY   58 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE-------------------------EEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCc-------------------------EEEEEecCCCCCCceeEECCCCCEEE
Confidence            34677776666777778999999997432                         22223322112578999999999776


Q ss_pred             EEe-eCCCeEEEEEcCCCCceeeecCC-------CCeEEEEEecCCCeEEEEecC------------CcEEEEECCCCce
Q 013347          228 SAS-YESSSFTIWDVAQGLGTPIRRGF-------GGLSILKWSPTGDYFFAAKFD------------GTFYLWETNTWTS  287 (444)
Q Consensus       228 ~~~-~d~~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~~~d------------~~v~iwd~~~~~~  287 (444)
                      +++ .++ .|.+||+.+++........       ..+..++|+|+|++|++++.+            +.|.+||+.+++.
T Consensus        59 v~~~~~~-~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  137 (349)
T 1jmx_B           59 VLNNHYG-DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  137 (349)
T ss_dssp             EEETTTT-EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             EEeCCCC-cEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence            555 455 9999999988766543322       237889999999999888765            8999999988554


Q ss_pred             e---ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC--CcCCCc--------------CCCCc--------
Q 013347          288 E---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHL--------------LPVDL--------  340 (444)
Q Consensus       288 ~---~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------~~~~~--------  340 (444)
                      .   ....+...+.+++|+|+|+ ++++ +.  .++.|+......  .+....              +....        
T Consensus       138 ~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (349)
T 1jmx_B          138 AKPVRTFPMPRQVYLMRAADDGS-LYVA-GP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML  213 (349)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSC-EEEE-SS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred             cceeeeccCCCcccceeECCCCc-EEEc-cC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence            2   2223445688999999999 5554 32  255554322110  000000              00000        


Q ss_pred             -----------------------------cccc--ccccCC-ceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCC
Q 013347          341 -----------------------------PDIV--SLTGSQ-GIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       341 -----------------------------~~~~--~~~~~~-~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                                                   ..+.  .+..+. .+..++|+| ||++|+++  +      +.|.+||++++
T Consensus       214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~------~~v~~~d~~~~  285 (349)
T 1jmx_B          214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L------NRLAKYDLKQR  285 (349)
T ss_dssp             EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E------SEEEEEETTTT
T ss_pred             eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c------CeEEEEECccC
Confidence                                         0000  000011 456788999 99999988  4      89999999987


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +...     .+.. ...+.+++|+|||++     |.++..+|.|.+|++.
T Consensus       286 ~~~~-----~~~~-~~~~~~~~~s~dg~~-----l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          286 KLIK-----AANL-DHTYYCVAFDKKGDK-----LYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEE-----EEEC-SSCCCEEEECSSSSC-----EEEESBSSEEEEEETT
T ss_pred             eEEE-----EEcC-CCCccceEECCCCCE-----EEEecCCCeEEEEecc
Confidence            7652     2332 345789999999987     4556677999998863

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=2.2e-18  Score=162.82  Aligned_cols=197  Identities=13%  Similarity=0.077  Sum_probs=139.7

Q ss_pred             cceEEEEEecCCCeEE----EEECCCeEEEEEccCC-----C--Cce--eEEecCCCCCeEEEEEeeC-CCeEEEEecCC
Q 013347          100 VDLQGVSWHQHKHIVA----FISGSTQVIVRDYEDS-----G--KDA--CILTSDSQRDVKVLEWRPN-GGRSLSVGCKG  165 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la----~~~~dg~v~iw~~~~~-----~--~~~--~~~~~~~~~~v~~l~~s~~-~~~ll~~~~dg  165 (444)
                      ..|++++|+|+|++||    +++.|+.|+|||+.+.     .  +..  .....+|...|.+++|+|+ +..+++++.||
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            4699999999999999    6778999999999752     0  111  2223578999999999998 56677788899


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL  245 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~  245 (444)
                      +|++||++...                         ......+|. ..|.+++|+|+|++|++++.|+ +|++||++ ++
T Consensus       173 ~v~iwD~~~~~-------------------------~~~~~~~~~-~~v~~v~wspdg~~lasgs~dg-~v~iwd~~-~~  224 (434)
T 2oit_A          173 SIAVLQVTETV-------------------------KVCATLPST-VAVTSVCWSPKGKQLAVGKQNG-TVVQYLPT-LQ  224 (434)
T ss_dssp             CEEEEEESSSE-------------------------EEEEEECGG-GCEEEEEECTTSSCEEEEETTS-CEEEECTT-CC
T ss_pred             eEEEEEcCCCc-------------------------ceeeccCCC-CceeEEEEcCCCCEEEEEcCCC-cEEEEccC-Cc
Confidence            99999998331                         122234454 7899999999999999999998 99999998 33


Q ss_pred             cee-eecC-------CCCeEEEEEecCCCeEEE-EecCC------cEEEEECCCCce------eccc-------cCCCce
Q 013347          246 GTP-IRRG-------FGGLSILKWSPTGDYFFA-AKFDG------TFYLWETNTWTS------EPWS-------STSGFV  297 (444)
Q Consensus       246 ~~~-~~~~-------~~~v~~~~~sp~~~~l~~-~~~d~------~v~iwd~~~~~~------~~~~-------~~~~~v  297 (444)
                      ... +..+       ...+.+++|++++.++++ ...+|      .+++|++++.+.      ..+.       ......
T Consensus       225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~  304 (434)
T 2oit_A          225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHH  304 (434)
T ss_dssp             EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCC
T ss_pred             ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcc
Confidence            332 2222       237899999998877754 33443      389999986531      1111       111122


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      .-+.+-++.++++++......+.++..
T Consensus       305 ~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          305 YYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             EEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             eeeehhccCCEEEEecCCCCceeEEEe
Confidence            233344777888888877777777764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=4e-18  Score=172.55  Aligned_cols=279  Identities=13%  Similarity=0.098  Sum_probs=168.5

Q ss_pred             EEEEEecCCCeEEEEECC---------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347          103 QGVSWHQHKHIVAFISGS---------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      ..++|||||++|++++.+         +.+.+||+.+ ++... + ..|...+..++|||||+.++.+ .++.|++|++.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-~~~~~-l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~  140 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQLIT-E-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEP  140 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEECC-S-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC-CcEEE-c-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECC
Confidence            458999999999998865         5677999987 33322 2 3677889999999998877666 67999999997


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccC--------CCceEEEEEccCCCeEEEEeeCCC-----------
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRYLASASYESS-----------  234 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~sp~~~~l~~~~~d~~-----------  234 (444)
                      .+...+....+...                ..+.++.        -.....+.|||||+.|++++.|.+           
T Consensus       141 ~~~~~~lt~~g~~~----------------~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~  204 (740)
T 4a5s_A          141 NLPSYRITWTGKED----------------IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS  204 (740)
T ss_dssp             TSCCEECCSCCBTT----------------TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred             CCceEEEcCCCCcc----------------ceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence            54422211111000                0011111        022345889999999988765432           


Q ss_pred             ------------------------eEEEEEcCC---C---Cceeeec------CCCCeEEEEEecCCCeEEEEec----C
Q 013347          235 ------------------------SFTIWDVAQ---G---LGTPIRR------GFGGLSILKWSPTGDYFFAAKF----D  274 (444)
Q Consensus       235 ------------------------~i~iwd~~~---~---~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~----d  274 (444)
                                              +|++||+.+   +   +...+..      +...+..++|+|||+.++....    +
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~  284 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY  284 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred             CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence                                    478899988   6   3334432      5567889999999997665432    2


Q ss_pred             CcEEEEECCCCc----e---ecc--ccCCCcee-----EEEECCCCCEEE-EEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          275 GTFYLWETNTWT----S---EPW--SSTSGFVT-----GATWDPEGRMIL-LAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       275 ~~v~iwd~~~~~----~---~~~--~~~~~~v~-----~~~~sp~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      ..|++||+.+++    +   ..+  ..+...+.     .++|+|||+.++ .....++.-..+. ++.           .
T Consensus       285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~-~~~-----------~  352 (740)
T 4a5s_A          285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY-FQI-----------D  352 (740)
T ss_dssp             EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE-EET-----------T
T ss_pred             EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEE-EEC-----------C
Confidence            379999999987    2   222  34555554     789999999887 5655544322222 221           2


Q ss_pred             cccccccccCC-ceeEEEECCCCCEEEEEecC--CCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d--~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ......++... .+..+.. +|++.|+..+..  .+. ....|+..++..+... ..+...+.+.......+.|||||++
T Consensus       353 ~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~-~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~~~~~~~S~dg~~  429 (740)
T 4a5s_A          353 KKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMP-GGRNLYKIQLIDYTKV-TCLSCELNPERCQYYSVSFSKEAKY  429 (740)
T ss_dssp             CSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCT-TCBEEEEEETTEEEEE-EESSTTTSTTTBCBEEEEECTTSSE
T ss_pred             CCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCC-ceeEEEEEECCCCCcc-eeeccccCCCCCceEEEEECCCCCE
Confidence            33334455444 5655542 447666655543  111 1134555555542211 0000011122345678899999986

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=2.3e-17  Score=153.89  Aligned_cols=240  Identities=11%  Similarity=0.022  Sum_probs=157.0

Q ss_pred             CCceeEEecCCCCCeEE-----EEEeeCCCeEEEEec-CCc--EEEEecCCCCCcceeeccccccccccccCCCCceEEE
Q 013347          132 GKDACILTSDSQRDVKV-----LEWRPNGGRSLSVGC-KGG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV  203 (444)
Q Consensus       132 ~~~~~~~~~~~~~~v~~-----l~~s~~~~~ll~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (444)
                      +.....++ .|......     .+|+|||+++++++. ++.  |.+||+....                         ..
T Consensus        20 g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------------------------~~   73 (388)
T 3pe7_A           20 GAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------------------------AT   73 (388)
T ss_dssp             CCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------------------EE
T ss_pred             CcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------------------eE
Confidence            44444443 55555555     789999998988887 564  7777776321                         11


Q ss_pred             EEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC-CeEEE--EEecCCCeEEEEe--------
Q 013347          204 DFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSIL--KWSPTGDYFFAAK--------  272 (444)
Q Consensus       204 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~-~v~~~--~~sp~~~~l~~~~--------  272 (444)
                      ....++ ...+..+.|+|||+.|++++.++ .|++||+.+++...+..... .+...  .++|++++++...        
T Consensus        74 ~lt~~~-~~~~~~~~~spdg~~l~~~~~~~-~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           74 QLTEGR-GDNTFGGFLSPDDDALFYVKDGR-NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVP  151 (388)
T ss_dssp             ECCCSS-CBCSSSCEECTTSSEEEEEETTT-EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             EeeeCC-CCCccceEEcCCCCEEEEEeCCC-eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccc
Confidence            112222 23444678999999999999887 99999999988776554433 33333  3489999887432        


Q ss_pred             --------------cCCcEEEEECCCCceeccccCCCceeEEEECC-CCCEEEEEEcC-----CceEEEEEeecCCCCcC
Q 013347          273 --------------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAFAG-----SLTLGSIHFASKPPSLD  332 (444)
Q Consensus       273 --------------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~-----~~~~~~~~~~~~~~~~~  332 (444)
                                    .+..|++||+.+++...+..+...+..++|+| +|+.|++....     ...++.++.        
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~--------  223 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE--------  223 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET--------
T ss_pred             ccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC--------
Confidence                          34679999999998877777777899999999 99998876643     224555543        


Q ss_pred             CCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC---CCCc
Q 013347          333 AHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG---DNPK  406 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~i~  406 (444)
                            .......+..+.   .+..++|+|||+.|+..+..... .+..|++||+.+++......   +.++.   ....
T Consensus       224 ------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~---~~~~~~~~~~~~  293 (388)
T 3pe7_A          224 ------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS-PDRFIYSADPETLENRQLTS---MPACSHLMSNYD  293 (388)
T ss_dssp             ------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC-CCEEEEEECTTTCCEEEEEE---ECCEEEEEECTT
T ss_pred             ------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC-CcceEEEEecCCCceEEEEc---CCCceeeeecCC
Confidence                  222233333332   47788999999988765543210 01349999999987542221   22210   1134


Q ss_pred             ceeeeeCCCCC
Q 013347          407 PVAFSFHDKFK  417 (444)
Q Consensus       407 ~v~~spdg~~~  417 (444)
                      .++|||||++.
T Consensus       294 ~~~~spdg~~l  304 (388)
T 3pe7_A          294 GSLMVGDGSDA  304 (388)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCeEccCCCcc
Confidence            56899999973

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=2.4e-17  Score=165.03  Aligned_cols=263  Identities=13%  Similarity=0.055  Sum_probs=166.5

Q ss_pred             ceEEEEEecCCCeEEEE--ECCCeEEEEEccCCCCceeEEecCCCCCeE---------EEEEe--eCCCe-EEEEec-CC
Q 013347          101 DLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVK---------VLEWR--PNGGR-SLSVGC-KG  165 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~--~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~---------~l~~s--~~~~~-ll~~~~-dg  165 (444)
                      .+..++|++++.+++..  +.++...||.... +.....++ .|...+.         ...|+  |||+. ++.++. +.
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~  102 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRA-DGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ  102 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECT-TSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECC-CCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence            48899999886666666  4578999999754 33333333 4555555         56676  99888 555443 34


Q ss_pred             cEEEEecCC-C-CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----------C
Q 013347          166 GICIWAPSY-P-GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----------S  233 (444)
Q Consensus       166 ~v~iw~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----------~  233 (444)
                      .|.++++.. . +....+....                    ...| ...+.+++|+|||+.|++++.+          .
T Consensus       103 ~l~~~~~~~~g~~~~~~l~~~~--------------------~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~  161 (662)
T 3azo_A          103 RLYAFEPDAPGGAVPRPLTPVS--------------------AVGG-GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR  161 (662)
T ss_dssp             CEEEECTTSTTCCCCEECSCCC--------------------CSTT-CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred             eEEEEcCCCCCCCCCEeccCCc--------------------cCCC-CccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence            555555430 1 2222221100                    0002 2578899999999999998876          4


Q ss_pred             CeEEEEEcCC------CCceeee-cCCCCeEEEEEecCCCeEEEEecC--------CcEEEEECC-CC---ceeccc-cC
Q 013347          234 SSFTIWDVAQ------GLGTPIR-RGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETN-TW---TSEPWS-ST  293 (444)
Q Consensus       234 ~~i~iwd~~~------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~-~~---~~~~~~-~~  293 (444)
                       .|++||+.+      ++...+. .+...+..++|+|||++|+.++.+        ..|++||+. ++   +...+. .+
T Consensus       162 -~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          162 -FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             -EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             -EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence             899999988      6666666 566778889999999999877754        379999999 56   444444 45


Q ss_pred             CCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccc-cCC---------ceeEEEECCCC
Q 013347          294 SGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQ---------GIEKIAWDASG  361 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~v~~~~~spdg  361 (444)
                      ...+..++|+|+|+++ +.++.++  .++.++...              .....+. ++.         .+..++|+|++
T Consensus       241 ~~~~~~~~~spdg~l~-~~~~~~~~~~l~~~~~~~--------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLI-VATDRTGWWNLHRVDPAT--------------GAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             TBCEEEEEECTTSCEE-EEECTTSSCEEEEECTTT--------------CCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CceEcceEECCCCeEE-EEECCCCCeEEEEEECCC--------------CceeecccccccccCccccccCceEeEeCCC
Confidence            6889999999999944 4545555  333333211              1111111 111         25678999999


Q ss_pred             CEEEEEecCCCccccceEEEE--EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          362 ERLAVSYKGGDDIYKGLIAIY--DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      +++++++. +      .++||  |+.+++.      ..+..|...+..+ |+++++.
T Consensus       306 ~~~~~~~~-~------~~~l~~~d~~~~~~------~~l~~~~~~~~~~-~s~~~~~  348 (662)
T 3azo_A          306 LIAVVHGK-G------AAVLGILDPESGEL------VDAAGPWTEWAAT-LTVSGTR  348 (662)
T ss_dssp             CEEEEEBS-S------SCEEEEEETTTTEE------EECCSSCCEEEEE-EEEETTE
T ss_pred             EEEEEEEc-C------ccEEEEEECCCCcE------EEecCCCCeEEEE-EecCCCE
Confidence            98888765 2      45555  7666543      2445555555544 2666553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.9e-17  Score=152.59  Aligned_cols=257  Identities=11%  Similarity=0.069  Sum_probs=171.2

Q ss_pred             EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC-----CCCCeEEEEEeeCCCeEEEEec--CCc
Q 013347          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC--KGG  166 (444)
Q Consensus       104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~~ll~~~~--dg~  166 (444)
                      .++|+|||+++++++          .++.|.+||..+ .+....+...     +......++++|||++++++..  ++.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~  132 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS  132 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe
Confidence            799999999999876          267799999986 4444333211     2345778999999888888764  589


Q ss_pred             EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCC-C
Q 013347          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQ-G  244 (444)
Q Consensus       167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~-~  244 (444)
                      |.+||+...+....+                        +..   .....+.+.|++ ..+++.+.|| .+.+|++.. +
T Consensus       133 v~v~d~~~~~~~~~~------------------------i~~---~~~~~v~~~p~~~~~~~~~~~dg-~~~~v~~~~~g  184 (361)
T 2oiz_A          133 IGIVDVAKGDYVEDV------------------------TAA---AGCWSVIPQPNRPRSFMTICGDG-GLLTINLGEDG  184 (361)
T ss_dssp             EEEEETTTTEEEEEE------------------------GGG---TTEEEEEECTTSSSEEEEEETTS-SEEEEEECTTS
T ss_pred             EEEEECCCCcEEEEE------------------------ecC---CCcceeEEcCCCCeeEEEECCCC-cEEEEEECCCC
Confidence            999999844322210                        111   122335566765 5667777787 888888865 3


Q ss_pred             Cceeee------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cc--c----C----CCceeEEEECCC
Q 013347          245 LGTPIR------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS--S----T----SGFVTGATWDPE  305 (444)
Q Consensus       245 ~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~--~----~----~~~v~~~~~sp~  305 (444)
                      +.....      ........+.+++++..++..+.++.|.++|+...+...   +.  .    .    ......++|+|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            332111      111112234456788888777889999999997654321   10  0    0    011223789999


Q ss_pred             CCEEEEEEc----------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccc
Q 013347          306 GRMILLAFA----------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       306 g~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      ++.++++..          ....+..|+..             +.+.+.++..+. +.+++|+|||++|++++ +     
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~-------------t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~-----  324 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTK-------------TKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G-----  324 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETT-------------TTEEEEEEECTT-CCEEEEETTTTEEEEEC-S-----
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECC-------------CCcEEEEEecCC-eeEEEECCCCCEEEEeC-C-----
Confidence            998887654          12356666642             345666777666 89999999999998876 3     


Q ss_pred             cceEEEEEcCCC--CeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          376 KGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       376 d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                       ++|.+||..++  +.+     ..+..++.....++++|||+
T Consensus       325 -~~v~v~D~~t~~l~~~-----~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 -GNVNVYDISQPEPKLL-----RTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             -SCEEEEECSSSSCEEE-----EEETTSCSSEEEEEECCCSC
T ss_pred             -CeEEEEECCCCcceee-----EEeccCCCCcEEEEecCCCC
Confidence             68999999998  554     45556677788999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=9.1e-17  Score=146.63  Aligned_cols=275  Identities=15%  Similarity=0.150  Sum_probs=180.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|.+++|++++..++..+.++.++.|.    +.....+ ..+...+.+++|+++++.+++...++.|.+||.+.....  
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~--   79 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTIT----AEPWLEI-SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--   79 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEE----CEEEEEE-ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--
T ss_pred             ccceeeecCCccceeEEeecccCcccc----cceeEEE-eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--
Confidence            367788899888777767888888982    2233333 355667899999999664445556789999998733211  


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----CCeEEEEEcCCCCceeeec---CC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----SSSFTIWDVAQGLGTPIRR---GF  253 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~~i~iwd~~~~~~~~~~~---~~  253 (444)
                                             .....+ ...+.+++++|+|+++++...+    + .|.+||..++....+..   ..
T Consensus        80 -----------------------~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           80 -----------------------RPFVSH-KANPAAIKIHKDGRLFVCYLGDFKSTG-GIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             -----------------------EEEECS-SSSEEEEEECTTSCEEEEECTTSSSCC-EEEEECTTSCSCEEEECSSSSC
T ss_pred             -----------------------EEeeCC-CCCcceEEECCCCcEEEEeCCCCCCCc-eEEEEeCCCCEEEEEEccCccC
Confidence                                   111122 3679999999999877776655    4 89999998877653332   34


Q ss_pred             CCeEEEEEecCCCeEEEEec------CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          254 GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      ..+.+++++|+|+++++...      .+.|..||..+++...+......+..++|+|+|+.++++...+..++.+++...
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~  214 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  214 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence            57899999999987776653      356777777766654444334457899999999988777665567777775321


Q ss_pred             CCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCC-----
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG-----  402 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----  402 (444)
                      ...    +..........+.++..+..++++++|+++++...+      +.|.+||.+ ++.+     ..+..+.     
T Consensus       215 g~~----~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~------~~v~~~d~~-g~~~-----~~~~~~~~~~g~  278 (333)
T 2dg1_A          215 GVT----IQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------GRVLVFNKR-GYPI-----GQILIPGRDEGH  278 (333)
T ss_dssp             SSS----EEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------TEEEEECTT-SCEE-----EEEECTTGGGTC
T ss_pred             CcC----cccccceEEEecCCCCCCCceEECCCCCEEEEEcCC------CEEEEECCC-CCEE-----EEEEcCCCcccc
Confidence            000    000000001112223357789999999988777666      899999985 4433     2233222     


Q ss_pred             -CCCcceeeeeCCCCCCCceEEEEecc
Q 013347          403 -DNPKPVAFSFHDKFKQGPLLSVCWSS  428 (444)
Q Consensus       403 -~~i~~v~~spdg~~~~~~~l~~~~~~  428 (444)
                       ..+.+++|+|||+.     |.++..+
T Consensus       279 ~~~~~~~~~~~dg~~-----L~v~~~~  300 (333)
T 2dg1_A          279 MLRSTHPQFIPGTNQ-----LIICSND  300 (333)
T ss_dssp             SCBCCEEEECTTSCE-----EEEEEEC
T ss_pred             ccCcceEEECCCCCE-----EEEEeCc
Confidence             26889999998754     4455444

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.77  E-value=1.6e-16  Score=145.90  Aligned_cols=240  Identities=13%  Similarity=0.121  Sum_probs=156.5

Q ss_pred             cceEEEEEecCCCeEEEEE---------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC---Cc-
Q 013347          100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GG-  166 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~---------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d---g~-  166 (444)
                      ..+..+++  ||+++|+..         .++.|.+|++.+ ++. ..+     ..+..++|+|||+.++.++.+   +. 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~-~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN-NAR-RFI-----ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT-CCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC-Cce-EEc-----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            34777888  999998753         256788888886 333 222     468899999998888877754   34 


Q ss_pred             -EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-------------
Q 013347          167 -ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-------------  232 (444)
Q Consensus       167 -v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-------------  232 (444)
                       |.+|++..+ ...                         .+..+. . +..++|+|||+.|+.++.+             
T Consensus        86 ~l~~~~~~~g-~~~-------------------------~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           86 EIWVADLETL-SSK-------------------------KILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             EEEEEETTTT-EEE-------------------------EEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             eEEEEECCCC-ceE-------------------------EEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence             666666522 111                         111222 3 8999999999999988743             


Q ss_pred             -------------CCeEEEEEcCCCCc-eeeecCCCCeEEEEEecCCCeEEEEecCC-------cEEEEECCCCceeccc
Q 013347          233 -------------SSSFTIWDVAQGLG-TPIRRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSEPWS  291 (444)
Q Consensus       233 -------------~~~i~iwd~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~  291 (444)
                                   ...|.+||+.+++. ..+.. . .+..++|+||| +++++..+.       ...||.+.+++...+.
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~  214 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF  214 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec
Confidence                         12799999998876 44544 4 78899999999 777775542       3344433366555555


Q ss_pred             cCCCceeEEEECCCCCEEEEEEcCC-------ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE-EEECCCCC
Q 013347          292 STSGFVTGATWDPEGRMILLAFAGS-------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK-IAWDASGE  362 (444)
Q Consensus       292 ~~~~~v~~~~~sp~g~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~spdg~  362 (444)
                      .+ ..+..+  +|+|++|++.....       ..++.++  .             ........++. .+.. +.|+ || 
T Consensus       215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------------~~~~~l~~~~~~~~~~~~~~s-dg-  274 (347)
T 2gop_A          215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------------KEVMGILDEVDRGVGQAKIKD-GK-  274 (347)
T ss_dssp             EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------------SCEEESSTTCCSEEEEEEEET-TE-
T ss_pred             cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------------CceEeccccCCcccCCccEEc-Cc-
Confidence            44 445444  99999988776432       2333333  1             11112223334 6776 8999 98 


Q ss_pred             EEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      ++++++.+      +.++|| +.+++..      .+..+...|.+++|+|
T Consensus       275 ~~~~~~~~------~~~~l~-~~~g~~~------~~~~~~~~v~~~~~s~  311 (347)
T 2gop_A          275 VYFTLFEE------GSVNLY-IWDGEIK------PIAKGRHWIMGFDVDE  311 (347)
T ss_dssp             EEEEEEET------TEEEEE-EESSSEE------EEECSSSEEEEEEESS
T ss_pred             EEEEEecC------CcEEEE-EcCCceE------EEecCCCeEEeeeeeC
Confidence            88888877      899999 8755432      2233456678889988

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=8.5e-16  Score=136.98  Aligned_cols=234  Identities=11%  Similarity=0.058  Sum_probs=160.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEe-eCCCeEEEEec--CCcEEEEec
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWR-PNGGRSLSVGC--KGGICIWAP  172 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s-~~~~~ll~~~~--dg~v~iw~~  172 (444)
                      .+.+++++++|+++++...++.|.+|+.+  +.....+..     ++...+..++++ ++ +.++++..  ++.|++|+.
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~~~d~  107 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQIYNQ  107 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEEEECT
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEEEECC
Confidence            47899999999988887889999999977  333333321     244578999995 55 56666653  799999994


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--  250 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--  250 (444)
                      + ...                         ...+.......+.+++++|+|+++++...++ .|.+||... +.....  
T Consensus       108 ~-g~~-------------------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~~g-~~~~~~~~  159 (286)
T 1q7f_A          108 Y-GQF-------------------------VRKFGATILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQNG-NVLHKFGC  159 (286)
T ss_dssp             T-SCE-------------------------EEEECTTTCSCEEEEEECTTSCEEEEETTTT-EEEEECTTS-CEEEEEEC
T ss_pred             C-CcE-------------------------EEEecCccCCCceEEEEeCCCCEEEEECCCC-EEEEEcCCC-CEEEEeCC
Confidence            3 221                         1122211225789999999998777666666 999999653 333333  


Q ss_pred             -cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc--CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          251 -RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       251 -~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                       .+...+..++++|+|+++++...++.|++||........+..  +...+..++++++|+++++.......+..++.   
T Consensus       160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~---  236 (286)
T 1q7f_A          160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ---  236 (286)
T ss_dssp             TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---
T ss_pred             CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC---
Confidence             233568999999999977887888999999986544444432  23578999999999876654332225555542   


Q ss_pred             CCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                                 ....+..+..+.   .+.+++++|+|+++++ +.+      ++|++|++..
T Consensus       237 -----------~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~------~~v~v~~~~~  280 (286)
T 1q7f_A          237 -----------DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD------YRLYIYRYVQ  280 (286)
T ss_dssp             -----------TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT------TEEEEEECSC
T ss_pred             -----------CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC------CeEEEEEccc
Confidence                       223333443332   4779999999987766 556      8999999864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=3.7e-16  Score=156.41  Aligned_cols=242  Identities=11%  Similarity=0.036  Sum_probs=153.9

Q ss_pred             EEEEe--cCCCe-EEEEEC-CCeEEEEEccCCC-CceeEEecC----CCCCeEEEEEeeCCCeEEEEecC----------
Q 013347          104 GVSWH--QHKHI-VAFISG-STQVIVRDYEDSG-KDACILTSD----SQRDVKVLEWRPNGGRSLSVGCK----------  164 (444)
Q Consensus       104 ~~~~s--p~g~~-la~~~~-dg~v~iw~~~~~~-~~~~~~~~~----~~~~v~~l~~s~~~~~ll~~~~d----------  164 (444)
                      ...|+  |||++ |++++. +..|.++++...+ .....+...    |...+.+++|+|||+.|++++.+          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            45565  99999 887654 4455555543001 233333321    66788999999999999888876          


Q ss_pred             CcEEEEecCCC-----CCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEccCCCeEEEEeeCC-----
Q 013347          165 GGICIWAPSYP-----GNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYES-----  233 (444)
Q Consensus       165 g~v~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~-----  233 (444)
                      ..|++|++...     +....                         +. .+. ..+..++|||||++|+.++.++     
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~-------------------------l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~  214 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRE-------------------------LSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPW  214 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEE-------------------------SSCSCS-SEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred             eEEEEEECCCCccccCCceeE-------------------------EEecCC-CcccCceECCCCCEEEEEECCCCCCCC
Confidence            57999998741     12211                         22 222 5678899999999999888653     


Q ss_pred             --CeEEEEEcC-CC---Cceeeec-CCCCeEEEEEecCCCeEEEEecCC--cEEEEECCCCceeccccCCCc--------
Q 013347          234 --SSFTIWDVA-QG---LGTPIRR-GFGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGF--------  296 (444)
Q Consensus       234 --~~i~iwd~~-~~---~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~~~~--------  296 (444)
                        ..|++||+. ++   +...+.. +...+..++|+|||++++++..++  .|.+||+.+++...+..+...        
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~  294 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTP  294 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCST
T ss_pred             CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccc
Confidence              379999998 56   4444544 367899999999999778887787  677777777776554433222        


Q ss_pred             -eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEE--EEecCCC
Q 013347          297 -VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLA--VSYKGGD  372 (444)
Q Consensus       297 -v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~--~~~~d~~  372 (444)
                       +.+++|+|++++++++..  +....|.+..            ....++.+..+. .+..+ |+++++.++  +++.+. 
T Consensus       295 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~d~------------~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~-  358 (662)
T 3azo_A          295 GMRWFAPLANGLIAVVHGK--GAAVLGILDP------------ESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRT-  358 (662)
T ss_dssp             TCCSEEECTTSCEEEEEBS--SSCEEEEEET------------TTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTE-
T ss_pred             cCceEeEeCCCEEEEEEEc--CccEEEEEEC------------CCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCC-
Confidence             467889999998876644  4444443321            222345555555 56655 144554433  333331 


Q ss_pred             ccccceEEEEEcCCCCeE
Q 013347          373 DIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       373 ~~~d~~i~vwd~~~~~~~  390 (444)
                         ...|.+||+.+++..
T Consensus       359 ---~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          359 ---AYEVVELDTVTGRAR  373 (662)
T ss_dssp             ---EEEEEEEETTTCCEE
T ss_pred             ---CCEEEEEECCCCceE
Confidence               135666777777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.74  E-value=5.3e-16  Score=156.31  Aligned_cols=274  Identities=11%  Similarity=0.052  Sum_probs=173.6

Q ss_pred             cCCCeEEEEECCC---eEEEEEccCC-CCceeEE-----ecCCCCCeEEEEEeeCCCeEEEEecC-C----cEEEEecCC
Q 013347          109 QHKHIVAFISGST---QVIVRDYEDS-GKDACIL-----TSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPSY  174 (444)
Q Consensus       109 p~g~~la~~~~dg---~v~iw~~~~~-~~~~~~~-----~~~~~~~v~~l~~s~~~~~ll~~~~d-g----~v~iw~~~~  174 (444)
                      |+|++++....++   .-.||..... +....++     ..+|...+..++|||||+.++.+..+ |    .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8999888765332   1245655432 2222221     12344568899999998888777664 2    899999984


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe----------------EEE
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS----------------FTI  238 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~----------------i~i  238 (444)
                      +.....                        .+. +  ..+..++|+|||+.|++++.++ .                |++
T Consensus       161 g~~~~~------------------------~~~-~--~~~~~~~wspDg~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~  212 (710)
T 2xdw_A          161 AKELPD------------------------VLE-R--VKFSCMAWTHDGKGMFYNAYPQ-QDGKSDGTETSTNLHQKLYY  212 (710)
T ss_dssp             TEEEEE------------------------EEE-E--ECSCCEEECTTSSEEEEEECCC-CSSCCSSSCCCCCCCCEEEE
T ss_pred             CCCCcc------------------------ccc-C--cccceEEEEeCCCEEEEEEECC-ccccccccccccCCCCEEEE
Confidence            322111                        111 1  2367899999999999998775 4                999


Q ss_pred             EEcCCCCce--eeec---CCCCeEEEEEecCCCeEEEEec-----CCcEEEEECCC------C--ceeccccCCCceeEE
Q 013347          239 WDVAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNT------W--TSEPWSSTSGFVTGA  300 (444)
Q Consensus       239 wd~~~~~~~--~~~~---~~~~v~~~~~sp~~~~l~~~~~-----d~~v~iwd~~~------~--~~~~~~~~~~~v~~~  300 (444)
                      |++.+++..  .+..   +...+..+.|+|||++|+.++.     +..|++||+.+      +  +...+..+...+.. 
T Consensus       213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-  291 (710)
T 2xdw_A          213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-  291 (710)
T ss_dssp             EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred             EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence            999887632  2222   2345789999999999977664     56899999986      5  34555555555544 


Q ss_pred             EECCCCCEEEEEEcCCc---eEEEEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCcc
Q 013347          301 TWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDI  374 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~  374 (444)
                      .|+|+|+.|++.+..+.   .++.+++...           .....+.+..+.   .+..++|++++.++++...++.  
T Consensus       292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~--  358 (710)
T 2xdw_A          292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDP-----------EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK--  358 (710)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE--
T ss_pred             EEeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE--
Confidence            58899998887765433   4555554211           001123333332   5778999987777877777621  


Q ss_pred             ccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec----cceeeeeee
Q 013347          375 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS----SGFCCTYPL  436 (444)
Q Consensus       375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~----~g~i~~~~~  436 (444)
                        ..|++|++.+++..     ..+..+...+..++++|+++.     +.+.++    .+.|+.|++
T Consensus       359 --~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~~-----l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          359 --NTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDTE-----IFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             --EEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCSE-----EEEEEECSSCCCEEEEEET
T ss_pred             --EEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCCE-----EEEEEeCCCCCCEEEEEEC
Confidence              35777788666543     345555666778889988754     333322    356666654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=5.9e-15  Score=134.32  Aligned_cols=246  Identities=13%  Similarity=0.061  Sum_probs=160.7

Q ss_pred             ceEEEEEecCCCeEEEEECC------------------------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGS------------------------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG  156 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~  156 (444)
                      .+.+++++|+|+++++...+                        +.|.+||..+ ++.......++-..+..++++++|+
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-AEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-CCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-CeEEeccCCCccCCceEEEECCCCC
Confidence            48999999999999887766                        4799999876 4544444335556889999999977


Q ss_pred             eEEEEecCCcEEEEecCCCC-CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEe-eCC
Q 013347          157 RSLSVGCKGGICIWAPSYPG-NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASAS-YES  233 (444)
Q Consensus       157 ~ll~~~~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~-~d~  233 (444)
                      .+++...++.|++|+.+... ....+....  .     .+         .-.++ ...+..++++| +++++++.+ .++
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~--~-----~g---------~~~~~-~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSM--Q-----PG---------SDQNH-FCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTT--B-----CC---------CSTTC-CSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccC--C-----CC---------CCccc-cCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            55555557999999976321 121111100  0     00         00112 24689999999 777777765 466


Q ss_pred             CeEEEEEcCCCCceeeecC-----------CCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCceec-c--ccCCCcee
Q 013347          234 SSFTIWDVAQGLGTPIRRG-----------FGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEP-W--SSTSGFVT  298 (444)
Q Consensus       234 ~~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~-~--~~~~~~v~  298 (444)
                       .|++||. .+........           -.....++++|+ ++++++...++.|++||..+++... +  ..+...+.
T Consensus       167 -~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~  244 (329)
T 3fvz_A          167 -RIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF  244 (329)
T ss_dssp             -EEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred             -eEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence             9999994 4544443321           134889999998 6666777788999999999777632 2  34566788


Q ss_pred             EEEECCCCCEEEEEE------cCCceEEEEEeecCCCCcCCCcCCCCccccccc---ccCC-ceeEEEECCCCCEEEEEe
Q 013347          299 GATWDPEGRMILLAF------AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL---TGSQ-GIEKIAWDASGERLAVSY  368 (444)
Q Consensus       299 ~~~~sp~g~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~v~~~~~spdg~~l~~~~  368 (444)
                      +++|+| +..+...+      .....+..|+..             +...+..+   .++. .+..++++|+|.++++..
T Consensus       245 ~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~-------------~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~  310 (329)
T 3fvz_A          245 AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS-------------SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA  310 (329)
T ss_dssp             EEEEET-TEEEEEECCCCTTCSCCCCEEEEETT-------------TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred             eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC-------------CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence            999999 43333221      111234444431             23333333   2333 689999999996666665


Q ss_pred             cCCCccccceEEEEEcCC
Q 013347          369 KGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       369 ~d~~~~~d~~i~vwd~~~  386 (444)
                      .+      +.|++|++..
T Consensus       311 ~~------~~I~~~~~~~  322 (329)
T 3fvz_A          311 HT------NTVWKFTLTE  322 (329)
T ss_dssp             SS------CCEEEEEEEE
T ss_pred             CC------CEEEEEeCCc
Confidence            55      8999999864

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=1.3e-15  Score=140.33  Aligned_cols=285  Identities=12%  Similarity=0.088  Sum_probs=171.3

Q ss_pred             CCCeEEEEE------CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcEEEEecC
Q 013347          110 HKHIVAFIS------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPS  173 (444)
Q Consensus       110 ~g~~la~~~------~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v~iw~~~  173 (444)
                      +++++++..      .|+.|.+||..+ ++....+. .+..+  .++|+||+++++++..          ++.|.+||..
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t-~~~~~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~   89 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTN-GKFLGMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD   89 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTT-CCEEEEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCC-CeEEEEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence            455555543      378999999887 55544443 33333  8999999888888763          5779999987


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceee-ec
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI-RR  251 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~-~~  251 (444)
                      +.+....+....                   ....+ ......++++|||++|+++... .+.|.+||+.+++.... ..
T Consensus        90 t~~~~~~i~~~~-------------------~~~~~-g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           90 KLTFEKEISLPP-------------------KRVQG-LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             TCCEEEEEEECT-------------------TBCCB-CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             CCcEEEEEEcCc-------------------ccccc-CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence            443333222110                   00001 1456789999999999998763 23999999998866554 44


Q ss_pred             CCCCeEEEEEecCC-CeEEEEecCCcEEEEECCC-Ccee-------ccccCCCceeEEEECCCCCEEEEEEcCCceEEEE
Q 013347          252 GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNT-WTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  322 (444)
Q Consensus       252 ~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~-~~~~-------~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~  322 (444)
                      .. ....+.+.|++ ..+++.+.||.+.+|+... ++..       .+...... ..+.++|++..++... .++.+..+
T Consensus       150 ~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~v~v~  226 (361)
T 2oiz_A          150 AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS-YYGNVYSA  226 (361)
T ss_dssp             GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB-TTSEEEEE
T ss_pred             CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe-CCCeEEEE
Confidence            32 23335677875 5678888899999998865 4432       11112222 2334467776666544 34567777


Q ss_pred             EeecCCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCEEEEEec-CCCc----cccceEEEEEcCCCCeEEEEE
Q 013347          323 HFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYK-GGDD----IYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~-d~~~----~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      ++......... .+.....  ......   .....++|+||++.++++.. ++..    ...+.|.+||+++++.+    
T Consensus       227 d~~~~~~~~~~-~~~~~~~--~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----  299 (361)
T 2oiz_A          227 DFSGDEVKVDG-PWSLLND--EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----  299 (361)
T ss_dssp             ECSSSSCEEEE-EEESCCH--HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----
T ss_pred             EecCCCceecc-cccccCc--cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----
Confidence            75321100000 0000000  000000   01223789999988887754 2100    01158999999998766    


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                       ..+..+.  +.+++|+|||++     |.++.. +.|.+|+..
T Consensus       300 -~~i~~~~--p~~ia~spdg~~-----l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          300 -ARIPGRD--ALSMTIDQQRNL-----MLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             -EEEECTT--CCEEEEETTTTE-----EEEECS-SCEEEEECS
T ss_pred             -EEEecCC--eeEEEECCCCCE-----EEEeCC-CeEEEEECC
Confidence             4566655  899999999987     445444 889988753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=2.1e-16  Score=147.69  Aligned_cols=238  Identities=9%  Similarity=0.035  Sum_probs=149.0

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEE-------------------EEEeeCCCeEEEE---
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-------------------LEWRPNGGRSLSV---  161 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~-------------------l~~s~~~~~ll~~---  161 (444)
                      .+.|+|||++|++++.++.|.+|++.+ ++...+. ..+......                   +.|+|+++.++..   
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~-~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLET-LEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTT-CCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCC-CCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            378999999999999999999999986 4433333 233332212                   2345555444433   


Q ss_pred             --ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCC-----
Q 013347          162 --GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYES-----  233 (444)
Q Consensus       162 --~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~-----  233 (444)
                        ..+..|.+||+..+.. .                         .+..+ ...+..+.|+| +++.|+..+.++     
T Consensus       163 ~~~~~~~l~~~d~~~g~~-~-------------------------~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~  215 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGEL-E-------------------------VIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVD  215 (396)
T ss_dssp             HTCCCEEEEEEETTTCCE-E-------------------------EEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred             cCCCcceEEEEECCCCcE-E-------------------------eeccC-CcccccceECCCCCCEEEEEecCCCCCCC
Confidence              2345677777763221 1                         11122 25788999999 888887776532     


Q ss_pred             CeEEEEEcCCCCceeeecCC--CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceeccccCCCceeEEEECC-C
Q 013347          234 SSFTIWDVAQGLGTPIRRGF--GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWSSTSGFVTGATWDP-E  305 (444)
Q Consensus       234 ~~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp-~  305 (444)
                      ..|.+||+.+++...+..+.  ..+..++|+|||++|+.++.+     +.|++||+.+++...+..... .. +.|+| +
T Consensus       216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~d  293 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFD  293 (396)
T ss_dssp             CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSS
T ss_pred             ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCC
Confidence            26889998776655544432  257789999999988766543     349999999887654443322 33 89999 9


Q ss_pred             CCEEEEEEc---------------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC------------ceeEEEEC
Q 013347          306 GRMILLAFA---------------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ------------GIEKIAWD  358 (444)
Q Consensus       306 g~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~s  358 (444)
                      |++++++..               .+..++.|++..              .....+..+.            .+..++|+
T Consensus       294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s  359 (396)
T 3c5m_A          294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA--------------KSAQKLCKHSTSWDVLDGDRQITHPHPSFT  359 (396)
T ss_dssp             SSEEEEEECCC----------CCCCCCEEEEEETTT--------------TBCCEEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred             CceEEEecCCcceeeccccccccCCCCcEEEEeccc--------------CceEEccCCCCccccccccccCCCCCceEc
Confidence            998886542               224555555421              1122233222            15678999


Q ss_pred             CCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      |||++|+.++.....   ..|+++++.+++.
T Consensus       360 ~dg~~l~~~s~~~~~---~~l~~~~~~~~~~  387 (396)
T 3c5m_A          360 PNDDGVLFTSDFEGV---PAIYIADVPESYK  387 (396)
T ss_dssp             TTSSEEEEEECTTSS---CEEEEEECCTTCC
T ss_pred             cCCCeEEEEecCCCC---ceEEEEEEccccc
Confidence            999999888764311   3455556665543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=6.1e-15  Score=148.60  Aligned_cols=244  Identities=10%  Similarity=0.064  Sum_probs=162.0

Q ss_pred             ceEEEEEecCCCeEEEEECCC-----eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCc---------
Q 013347          101 DLQGVSWHQHKHIVAFISGST-----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG---------  166 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~---------  166 (444)
                      .+..++|||||++||+++.++     .|++||+.+ ++...... .+ ..+.+++|+|||+.|+.++.++.         
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t-g~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCcccc-cC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            588999999999999876443     899999987 43333221 22 22678999999999998887755         


Q ss_pred             -------EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-----CCC
Q 013347          167 -------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-----ESS  234 (444)
Q Consensus       167 -------v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~~  234 (444)
                             |++|++.++.....                     ++.....+ ...+..+.|+|||++|+..+.     +. 
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~---------------------~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~-  259 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDI---------------------LCAEFPDE-PKWMGGAELSDDGRYVLLSIREGCDPVN-  259 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECSSSSCC-
T ss_pred             ccCCCCEEEEEECCCCcccce---------------------EEeccCCC-CeEEEEEEEcCCCCEEEEEEEccCCCcc-
Confidence                   89999874332111                     11111112 245789999999999988875     44 


Q ss_pred             eEEEEEcCC------C--CceeeecCCCCeEEEEEecCCCeEEEEecC----CcEEEEECCCCce---eccccCCC--ce
Q 013347          235 SFTIWDVAQ------G--LGTPIRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS---EPWSSTSG--FV  297 (444)
Q Consensus       235 ~i~iwd~~~------~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~v~iwd~~~~~~---~~~~~~~~--~v  297 (444)
                      .|++||+.+      +  ....+..+...+.. .|+|+|+.|+..+..    ..|.+||+.+++.   ..+..+..  .+
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  338 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence            899999986      4  34556666555554 588999988665543    3699999988752   44444543  68


Q ss_pred             eEEEECCCCCEEEEEEcCCce--EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEe-cCCCc
Q 013347          298 TGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY-KGGDD  373 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~-~d~~~  373 (444)
                      ..++|++++.++++.. .++.  ++.+++.             ++..+..+..+. .+..++++|+++.|+... .... 
T Consensus       339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~-------------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~-  403 (710)
T 2xdw_A          339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLA-------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLS-  403 (710)
T ss_dssp             EEEEEETTTEEEEEEE-ETTEEEEEEEETT-------------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSC-
T ss_pred             EEEEEEcCCEEEEEEE-ECCEEEEEEEECC-------------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCC-
Confidence            8899987666655443 3343  3333321             122334444444 688899999997666443 2222 


Q ss_pred             cccceEEEEEcCCCC
Q 013347          374 IYKGLIAIYDARRTP  388 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~  388 (444)
                        .++|++||+.+++
T Consensus       404 --P~~i~~~d~~tg~  416 (710)
T 2xdw_A          404 --PGIIYHCDLTKEE  416 (710)
T ss_dssp             --CCEEEEEETTSSS
T ss_pred             --CCEEEEEECCCCc
Confidence              2799999998876

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=1.5e-15  Score=152.54  Aligned_cols=272  Identities=8%  Similarity=0.013  Sum_probs=170.8

Q ss_pred             ecCCCeEEEEECCC---eEEEEEccCCCCceeEEe------cCCCCCeEEEEEeeCCCeEEEEec-----CCcEEEEecC
Q 013347          108 HQHKHIVAFISGST---QVIVRDYEDSGKDACILT------SDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPS  173 (444)
Q Consensus       108 sp~g~~la~~~~dg---~v~iw~~~~~~~~~~~~~------~~~~~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~  173 (444)
                      +|+|++++....++   .-.||.....+.....++      .+|...+.+++|||||++++.+..     +..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            48999998876544   355666553222233332      245557899999999888776543     2579999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe-------------EEEEE
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS-------------FTIWD  240 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~-------------i~iwd  240 (444)
                      ++.....  .                     .+.   ......++|+|||+.|++++.+. .             |++|+
T Consensus       156 tg~~~~~--~---------------------~~~---~~~~~~~~wspDg~~l~~~~~d~-~~~~~~~~~~~~~~v~~~~  208 (695)
T 2bkl_A          156 SGEWSKV--D---------------------VIE---GGKYATPKWTPDSKGFYYEWLPT-DPSIKVDERPGYTTIRYHT  208 (695)
T ss_dssp             TCCBCSS--C---------------------CBS---CCTTCCCEECTTSSEEEEEECCC-CTTSCGGGGGGGCEEEEEE
T ss_pred             CCCCcCC--c---------------------ccC---cccccceEEecCCCEEEEEEecC-CCCCccccCCCCCEEEEEE
Confidence            5443200  0                     011   01226799999999999998875 5             99999


Q ss_pred             cCCCCce--eeec---CCCCeEEEEEecCCCeEEEEecCC----cEEEEECCCCceeccccCCCceeEEEECCCCCEEEE
Q 013347          241 VAQGLGT--PIRR---GFGGLSILKWSPTGDYFFAAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       241 ~~~~~~~--~~~~---~~~~v~~~~~sp~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  311 (444)
                      +.++...  .+..   +...+..+.|+|||++|+.++.++    .|++||..+++...+..+...+....+ ++|. +++
T Consensus       209 l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~  286 (695)
T 2bkl_A          209 LGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYV  286 (695)
T ss_dssp             TTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEE
T ss_pred             CCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEE
Confidence            9987632  2322   235788999999999998777665    788887766666666666666667767 6777 665


Q ss_pred             EEcC---CceEEEEEeecCCCCcCCCcCCCCccccccccc-C-C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          312 AFAG---SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-S-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       312 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      ..+.   +..++.+++...           .......+.. + . .+..++|+ ++.++++...+      +..+||.+.
T Consensus       287 ~s~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~~l~~~~  348 (695)
T 2bkl_A          287 LTDEGAPRQRVFEVDPAKP-----------ARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD------ATSEVRVAT  348 (695)
T ss_dssp             EECTTCTTCEEEEEBTTBC-----------SGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET------TEEEEEEEE
T ss_pred             EECCCCCCCEEEEEeCCCC-----------CccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC------CEEEEEEEe
Confidence            5542   345555543211           0001122332 2 2 57888888 67777777777      777777554


Q ss_pred             -CCCeEEEEEeeeeeCC-CCCCcceeeeeCCCCCCCceEEEEec----cceeeeeee
Q 013347          386 -RTPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWS----SGFCCTYPL  436 (444)
Q Consensus       386 -~~~~~~~~~~~~~~~~-~~~i~~v~~spdg~~~~~~~l~~~~~----~g~i~~~~~  436 (444)
                       .++..     ..+..+ ...+..++++||++.     +.+.++    .+.|+.|++
T Consensus       349 ~~g~~~-----~~l~~~~~~~v~~~~~s~d~~~-----l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          349 LKGKPV-----RTVQLPGVGAASNLMGLEDLDD-----AYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             TTCCEE-----EECCCSSSSEECCCBSCTTCSE-----EEEEEEETTEEEEEEEEET
T ss_pred             CCCCee-----EEecCCCCeEEEEeecCCCCCE-----EEEEEcCCCCCCEEEEEEC
Confidence             23322     234444 456778899998764     333333    356666654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=2.8e-14  Score=138.26  Aligned_cols=276  Identities=12%  Similarity=0.076  Sum_probs=181.0

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecC--CCCCcceeecccc
Q 013347          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS--YPGNAASVRSGAA  186 (444)
Q Consensus       109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~--~~~~~~~~~~~~~  186 (444)
                      |.+.++++...++.|.++|..+ ++....+.  ....+..+.|+|||+++++++.++.|.+||+.  +.+....      
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~------  235 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGST-YEIKTVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------  235 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTT-CCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------
T ss_pred             CCceEEEEeCCCCeEEEEECCC-CeEEEEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE------
Confidence            4445666677899999999987 45554443  33467799999999999988889999999985  3322222      


Q ss_pred             ccccccccCCCCceEEEEEeeccCCCceEEEEEc----cCCCeEEEEeeCCCeEEEEEcCCCCceeeecC----------
Q 013347          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRG----------  252 (444)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~----------  252 (444)
                                         +...  .....++|+    |||+++++++...++|.++|..+.+.+.....          
T Consensus       236 -------------------i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          236 -------------------IKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             -------------------EECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             -------------------EecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence                               2221  457899999    69999998887756999999988876653321          


Q ss_pred             --CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          253 --FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       253 --~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                        ...+..+..++++..+ +....+|.|.++|....+..  ...........+.|+|+|++++++...+..+..++....
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~  374 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  374 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence              1267888889887665 55566799999999875431  122344567789999999999988877788888876421


Q ss_pred             CCCcCCCcCCCCccccccccc-----CCceeEEE-ECCCCCEEEEEecCCCccccceEEEEEcCCCCe--EEEEEeeeee
Q 013347          328 PPSLDAHLLPVDLPDIVSLTG-----SQGIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDARRTPL--ISLSLIGFIR  399 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~-~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~  399 (444)
                                   +.+..+.-     |. -..+. ++|++..+.+.+.-+    +++|.++|...++.  ..++.+..+.
T Consensus       375 -------------kl~~~i~vgg~~Php-g~g~~~~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~  436 (567)
T 1qks_A          375 -------------KLVAIEDTGGQTPHP-GRGANFVHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFP  436 (567)
T ss_dssp             -------------EEEEEEECSSSSBCC-TTCEEEEETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             -------------cEEEEEeccCcCCCC-ccceeeECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEe
Confidence                         11211211     21 11222 588865555444321    17999999987321  0012234555


Q ss_pred             CCCCCCcceeeeeCCCCCCCceEEEEec-------cceeeeeeee
Q 013347          400 GPGDNPKPVAFSFHDKFKQGPLLSVCWS-------SGFCCTYPLI  437 (444)
Q Consensus       400 ~~~~~i~~v~~spdg~~~~~~~l~~~~~-------~g~i~~~~~~  437 (444)
                      .....-..++.+||+++     |-+...       ++.|.+|++.
T Consensus       437 ~~g~g~~~i~~~p~~~~-----l~v~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          437 ALGGGSLFIKTHPNSQY-----LYVDATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             CSCSCCCCEECCTTCSE-----EEEECTTCSSHHHHTCEEEEEGG
T ss_pred             cCCCCCEEEEeCCCCCe-----EEEecCCCCCcccCceEEEEECC
Confidence            54444456788999986     334331       3466666654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=6.5e-15  Score=134.05  Aligned_cols=248  Identities=12%  Similarity=0.023  Sum_probs=160.1

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCC------------------------cEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKG------------------------GICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg------------------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      -+.+.+++++|+|+.+++...++                        .|.+||..+...                     
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------   81 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------   81 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence            46799999999976555555553                        567777652221                     


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeee----------cCCCCeEEEEEec-CCC
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIR----------RGFGGLSILKWSP-TGD  266 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~----------~~~~~v~~~~~sp-~~~  266 (444)
                          ...+.......+..++++|+|+++++...++ .|++||..... .....          .+......++++| +++
T Consensus        82 ----~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~-~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~  156 (329)
T 3fvz_A           82 ----LQSSGKNLFYLPHGLSIDTDGNYWVTDVALH-QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA  156 (329)
T ss_dssp             ----EEEECTTTCSSEEEEEECTTSCEEEEETTTT-EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred             ----EeccCCCccCCceEEEECCCCCEEEEECCCC-EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence                1122211225789999999999777777676 99999986552 22222          2224688999999 788


Q ss_pred             eEEEEe-cCCcEEEEECCCCceecccc----------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          267 YFFAAK-FDGTFYLWETNTWTSEPWSS----------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       267 ~l~~~~-~d~~v~iwd~~~~~~~~~~~----------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ++++.+ .++.|++||........+..          +-.....++++|++..|+++...+.++..++..          
T Consensus       157 lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----------  226 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----------  226 (329)
T ss_dssp             EEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----------
T ss_pred             EEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----------
Confidence            778876 68999999954332233321          223478999999966666677777777777742          


Q ss_pred             CCCCcccccccc--cCC-ceeEEEECCCCCEEEEEecCC-CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          336 LPVDLPDIVSLT--GSQ-GIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       336 ~~~~~~~~~~~~--~~~-~v~~~~~spdg~~l~~~~~d~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                         ++..+..+.  .+. .+..++|+| +..+++.+... .+..+..|++|++.+++++..  .....++...+..++++
T Consensus       227 ---~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~--~~~~~~~~~~p~~ia~~  300 (329)
T 3fvz_A          227 ---TKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV--FKPVRKHFDMPHDIVAS  300 (329)
T ss_dssp             ---TCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE--ECCSSSCCSSEEEEEEC
T ss_pred             ---CCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE--EcCCCCccCCeeEEEEC
Confidence               133333432  223 678999999 43333322110 001126899999998887621  11113566678899999


Q ss_pred             eCCCCCCCceEEEEeccceeeeeeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      |||+     ++.....+++|..|++.
T Consensus       301 ~dG~-----lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          301 EDGT-----VYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             TTSE-----EEEEESSSCCEEEEEEE
T ss_pred             CCCC-----EEEEECCCCEEEEEeCC
Confidence            9985     46677889999999875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=1.5e-14  Score=129.50  Aligned_cols=236  Identities=10%  Similarity=0.005  Sum_probs=158.5

Q ss_pred             eEEEEEecCCC-eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      ..+++|+|+|+ +++++..++.|.+|+..+ +  ...+ ..+...+.+++++++|+.+++...++.|.+|+..++.. ..
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~-~~  104 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW-ES  104 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-EE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-EE
Confidence            67899999998 677777899999999986 3  3333 35667899999999966444444468999999863321 11


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEE----ee-------------CCCeEEEEEcCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASA----SY-------------ESSSFTIWDVAQ  243 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~-------------d~~~i~iwd~~~  243 (444)
                      +..                     ...+.....+..++++|+|+++++.    +.             .+ .|..++.. 
T Consensus       105 ~~~---------------------~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~-~l~~~~~~-  161 (296)
T 3e5z_A          105 IAD---------------------SFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR-WVFRLAPD-  161 (296)
T ss_dssp             EEC---------------------EETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC-EEEEECTT-
T ss_pred             Eee---------------------ccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc-EEEEECCC-
Confidence            110                     1111112356789999999988863    21             22 56666655 


Q ss_pred             CCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC-CCce----eccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          244 GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-TWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       244 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-~~~~----~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      ++...+..+......++|+|+++.+++.+.++.|++||+. +++.    ..+..+...+.+++++++|++.++.   +..
T Consensus       162 g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~  238 (296)
T 3e5z_A          162 GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDG  238 (296)
T ss_dssp             SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTE
T ss_pred             CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCe
Confidence            4444455556678899999999998777778899999987 4443    1222345567889999999866644   344


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEE-CCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +..++.              ....+..+..+..+.+++| +|+++.|++++.+       .+.-++.+++.+
T Consensus       239 v~~~~~--------------~g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-------~l~~~~~~~~~~  289 (296)
T 3e5z_A          239 VHVLTP--------------DGDELGRVLTPQTTSNLCFGGPEGRTLYMTVST-------EFWSIETNVRGL  289 (296)
T ss_dssp             EEEECT--------------TSCEEEEEECSSCCCEEEEESTTSCEEEEEETT-------EEEEEECSCCBC
T ss_pred             EEEECC--------------CCCEEEEEECCCCceeEEEECCCCCEEEEEcCC-------eEEEEEcccccc
Confidence            554442              2333444444444788999 6999999888764       466667766544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=3.6e-14  Score=137.44  Aligned_cols=306  Identities=10%  Similarity=-0.010  Sum_probs=192.8

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEcc--CCCCceeEEecCCCCCeEEEEEe----eCCCeEEEEecC-CcEEEEec
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYE--DSGKDACILTSDSQRDVKVLEWR----PNGGRSLSVGCK-GGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~--~~~~~~~~~~~~~~~~v~~l~~s----~~~~~ll~~~~d-g~v~iw~~  172 (444)
                      ..+..++|+|||+++++++.++.|.+||+.  + .+....+.  .......++|+    |||++++++... ++|.++|.
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAEIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEEEe--cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            357899999999999999999999999995  4 34444432  23456889999    698888877764 99999998


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--ee
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IR  250 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~  250 (444)
                      .+.+....+..+....               .....|....+..+..++++..++....+.+.|.++|....+...  ..
T Consensus       274 ~t~~~~~~i~~~~~~~---------------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i  338 (567)
T 1qks_A          274 ETLEPKKIQSTRGMTY---------------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI  338 (567)
T ss_dssp             TTCCEEEEEECCEECT---------------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred             CCCcEEEEEecccccc---------------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence            7555444443320000               000012223688899999877766665555599999987754332  22


Q ss_pred             cCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCceeccc------cCCCceeEEE-ECCCCCEEEEEE-cCCceEEE
Q 013347          251 RGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS------STSGFVTGAT-WDPEGRMILLAF-AGSLTLGS  321 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~~~~------~~~~~v~~~~-~sp~g~~l~~~~-~~~~~~~~  321 (444)
                      ........+.|+|++++|++++ .+++|.++|+.+++.....      .|.+.  .+. ++|++..+.++. -.+..+..
T Consensus       339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~--g~~~~~p~~g~v~~t~~~g~~~Vsv  416 (567)
T 1qks_A          339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR--GANFVHPTFGPVWATSHMGDDSVAL  416 (567)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT--CEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc--ceeeECCCCCcEEEeCCCCCCeEEE
Confidence            3345677899999999986655 5789999999998873221      23322  222 588865555443 34466777


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc-cccceEEEEEcCCC-----CeE-EEE
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRT-----PLI-SLS  393 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~-~~d~~i~vwd~~~~-----~~~-~~~  393 (444)
                      ++.....      -.....+.++++.... .-..+..+|++++|.+...-+.+ ...++|.|+|+.+.     ... ...
T Consensus       417 id~~~~~------~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~  490 (567)
T 1qks_A          417 IGTDPEG------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL  490 (567)
T ss_dssp             EECCTTT------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred             ecCCCCC------CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEe
Confidence            7653210      0011234455555443 33457789999999987642110 01269999999875     211 111


Q ss_pred             Eeee---eeCCCCCCcceeeeeCCCCCCCceEEEEe----ccceeeeee
Q 013347          394 LIGF---IRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYP  435 (444)
Q Consensus       394 ~~~~---~~~~~~~i~~v~~spdg~~~~~~~l~~~~----~~g~i~~~~  435 (444)
                      ++..   +......+..+.|+|||++    +....|    .++.|.+++
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          491 PIAEWAGITEGQPRVVQGEFNKDGTE----VWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             CHHHHHTCCSSCCEEEEEEECTTSSE----EEEEEECCTTSCCEEEEEE
T ss_pred             ccccccccCCCCcceEeeeECCCCCE----EEEEeecCCCCCCcEEEEE
Confidence            1111   1112456789999999997    344455    367887765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=9.5e-14  Score=123.63  Aligned_cols=242  Identities=9%  Similarity=0.017  Sum_probs=157.6

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE-
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-  219 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-  219 (444)
                      ++-..+.++++++++..+++...++.|++|+.+ .+....+....                   ...++ ...+..+++ 
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-------------------~~~~~-~~~p~~i~~~   85 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-------------------KRDSQ-LLYPNRVAVV   85 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-------------------SSTTC-BSSEEEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-------------------CCccc-ccCceEEEEE
Confidence            455678999999996655555667999999976 22211111000                   00112 246889999 


Q ss_pred             ccCCCeEEEEee-CCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCC
Q 013347          220 GPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STS  294 (444)
Q Consensus       220 sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~  294 (444)
                      .++++++++... ++ .|.+|| .+++......  +...+..++++|+|+++++...++.|.+||........+.  .+.
T Consensus        86 ~~~g~l~v~~~~~~~-~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~  163 (286)
T 1q7f_A           86 RNSGDIIVTERSPTH-QIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHL  163 (286)
T ss_dssp             TTTTEEEEEECGGGC-EEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTC
T ss_pred             cCCCeEEEEcCCCCC-EEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCcc
Confidence            577776666543 66 999999 4454444332  2357899999999998787777899999997644333332  344


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC---CceeEEEECCCCCEEEEEecCC
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS---QGIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~l~~~~~d~  371 (444)
                      ..+..++++|+|++++ +...+..+..++.              ....+..+..+   ..+..++++|+|+++++...+ 
T Consensus       164 ~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~--------------~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~-  227 (286)
T 1q7f_A          164 EFPNGVVVNDKQEIFI-SDNRAHCVKVFNY--------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-  227 (286)
T ss_dssp             SSEEEEEECSSSEEEE-EEGGGTEEEEEET--------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-
T ss_pred             CCcEEEEECCCCCEEE-EECCCCEEEEEcC--------------CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCC-
Confidence            5689999999998555 4444456666653              12223333222   267899999999988877665 


Q ss_pred             Cccccc-eEEEEEcCCCCeEEEEEeeeeeCC--CCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          372 DDIYKG-LIAIYDARRTPLISLSLIGFIRGP--GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       372 ~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~--~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                           + .|++|+... +.+     ..+..+  ...+.+++++|+|++     +... .+++|.+|.+..
T Consensus       228 -----~~~i~~~~~~g-~~~-----~~~~~~~~~~~~~~i~~~~~g~l-----~vs~-~~~~v~v~~~~~  280 (286)
T 1q7f_A          228 -----NFNLTIFTQDG-QLI-----SALESKVKHAQCFDVALMDDGSV-----VLAS-KDYRLYIYRYVQ  280 (286)
T ss_dssp             -----SCEEEEECTTS-CEE-----EEEEESSCCSCEEEEEEETTTEE-----EEEE-TTTEEEEEECSC
T ss_pred             -----CEEEEEECCCC-CEE-----EEEcccCCCCcceeEEECCCCcE-----EEEC-CCCeEEEEEccc
Confidence                 5 999999653 333     222222  234678999999864     3334 589999998653

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.67  E-value=6.3e-13  Score=118.87  Aligned_cols=272  Identities=10%  Similarity=0.049  Sum_probs=177.4

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+.+++++++|+++++...++.|.+|+..  +.........+...+.++++++++..+++...++.|..|+.+  +....
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~   91 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKE   91 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEE
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC--CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEE
Confidence            58999999999987766567899999987  333332222345789999999996555554447889999875  11111


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~  258 (444)
                      +.                       +... ...+.+++++++|+++++...++ .|.+||. +++.....  .....+..
T Consensus        92 ~~-----------------------~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~d~-~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           92 YT-----------------------LPNP-DSAPYGITEGPNGDIWFTEMNGN-RIGRITD-DGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             EE-----------------------CSST-TCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             Ee-----------------------CCCc-CCCceeeEECCCCCEEEEecCCc-eEEEECC-CCCEEEecCCCCCCCCce
Confidence            10                       1111 25789999999998777665565 8999998 55444332  23467899


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      ++++++|+.+++...++.|..||. +++...+  ......+.+++++++|++.+ +......+..++. +.         
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~-~g---------  213 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITT-SG---------  213 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-TC---------
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECC-CC---------
Confidence            999999987777777789999999 6665432  33455688999999998655 4444455665553 11         


Q ss_pred             CCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          337 PVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       337 ~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                        .... .....+ ..+.+++++++|+++++...+      +.|.+||.. ++....    .+..+...+.++++ ++|+
T Consensus       214 --~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~~-g~~~~~----~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          214 --EITE-FKIPTPNARPHAITAGAGIDLWFTEWGA------NKIGRLTSN-NIIEEY----PIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             --CEEE-EECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEEETT-TEEEEE----ECSSSSCCEEEEEE-CSSC
T ss_pred             --cEEE-EECCCCCCCceeEEECCCCCEEEeccCC------ceEEEECCC-CceEEE----eCCCCCCccceEEe-cCCC
Confidence              0000 011112 268899999999966665455      789999984 433211    12344566888898 8876


Q ss_pred             CCCCceEEEEeccceeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +      -++-..+.+..|+
T Consensus       279 l------~v~~~~~~l~~~~  292 (299)
T 2z2n_A          279 I------WFAMECDKIGKLT  292 (299)
T ss_dssp             E------EEEETTTEEEEEE
T ss_pred             E------EEEecCCcEEEEE
Confidence            4      2332345555554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=3.7e-14  Score=125.06  Aligned_cols=237  Identities=8%  Similarity=0.013  Sum_probs=157.3

Q ss_pred             ceEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ...+++++++|++++ +...++.|.+|+....  ........+...+.++++++++. ++++..++.|.+|+...... .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~-~  100 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ-T  100 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-e
Confidence            478899999999776 4467889999987642  22222223445788999999966 55555588999999763211 1


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~  258 (444)
                      .+                         .......+..++++++|+.+++...++ .|.+|+..+....... .....+..
T Consensus       101 ~~-------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~p~~  154 (270)
T 1rwi_B          101 VL-------------------------PFDGLNYPEGLAVDTQGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDG  154 (270)
T ss_dssp             EC-------------------------CCCSCSSEEEEEECTTCCEEEEEGGGT-EEEEECTTCCSCEECCCCSCCSCCC
T ss_pred             ee-------------------------ecCCcCCCcceEECCCCCEEEEECCCC-EEEEEECCCceeEeeccccCCCcee
Confidence            11                         101125688999999998766666666 8999986655433222 22346788


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      ++++++|+++++...++.|.+||..+...... ......+.+++++++|.+.+ +...+..+..++...           
T Consensus       155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~-----------  222 (270)
T 1rwi_B          155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGS-----------  222 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTC-----------
T ss_pred             EEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCC-----------
Confidence            99999999777777788999999987765332 23336789999999995544 555455666655311           


Q ss_pred             CCcccccccc-cC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          338 VDLPDIVSLT-GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       338 ~~~~~~~~~~-~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                         ....... .+ ..+.+++++|+|+++++...+      +.|++|++...+
T Consensus       223 ---~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~------~~v~~~~~~~~~  266 (270)
T 1rwi_B          223 ---TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSLEHH  266 (270)
T ss_dssp             ---SCCEECCCCSCSCEEEEEECTTCCEEEEEGGG------TEEEEECCCGGG
T ss_pred             ---CcceeeccCCCCCceeEEECCCCCEEEEECCC------CEEEEEcCCCcc
Confidence               1111111 12 368899999999977776666      899999988654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.67  E-value=1e-14  Score=146.60  Aligned_cols=248  Identities=9%  Similarity=-0.009  Sum_probs=158.8

Q ss_pred             ceEEEEEecCCCeEEEEE-----CCCeEEEEEccCCCCce-eEEecCCCCCeEEEEEeeCCCeEEEEecCCc--------
Q 013347          101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--------  166 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-----~dg~v~iw~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~--------  166 (444)
                      .+.+++|||||++||.+.     .+..|++||+.+ ++.. .... .. .....++|+|||+.|+.++.+..        
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~  198 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSKVDVI-EG-GKYATPKWTPDSKGFYYEWLPTDPSIKVDER  198 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT-CCBCSSCCB-SC-CTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC-CCCcCCccc-Cc-ccccceEEecCCCEEEEEEecCCCCCccccC
Confidence            588999999999999653     346899999997 3332 1111 11 11267999999998998888765        


Q ss_pred             -----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC-C--eEEE
Q 013347          167 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-S--SFTI  238 (444)
Q Consensus       167 -----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~--~i~i  238 (444)
                           |++|++.++.....                     ++.....+ ...+..+.|+|||++|+.++.++ +  .|.+
T Consensus       199 ~~~~~v~~~~l~t~~~~~~---------------------lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          199 PGYTTIRYHTLGTEPSKDT---------------------VVHERTGD-PTTFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             GGGCEEEEEETTSCGGGCE---------------------EEECCCCC-TTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEEECCCCchhce---------------------EEEecCCC-CEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence                 99999874432111                     11112223 25788999999999998877653 2  5777


Q ss_pred             EEcCCCCceeeecCCCCeEEEEEecCCCeEEEEe---cCCcEEEEECCCCce---eccccC--CCceeEEEECCCCCEEE
Q 013347          239 WDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK---FDGTFYLWETNTWTS---EPWSST--SGFVTGATWDPEGRMIL  310 (444)
Q Consensus       239 wd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~v~iwd~~~~~~---~~~~~~--~~~v~~~~~sp~g~~l~  310 (444)
                      |+..+++...+..+...+....| ++|++++.+.   .++.|.+||+.+++.   ..+..+  ...+..++|+ ++.+++
T Consensus       257 ~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~  334 (695)
T 2bkl_A          257 KRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSL  334 (695)
T ss_dssp             ECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred             EcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence            77666666677777667777777 5666444443   257899999988763   334433  4457888888 454444


Q ss_pred             EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-C-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-Q-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                       ....++....+.+.-            .+.....+..+ . .+..++++|+++.|+.......  .+++|++||+.+++
T Consensus       335 -~~~~dg~~~l~~~~~------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~--~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          335 -EYLKDATSEVRVATL------------KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFT--TPRQIYKTSVSTGK  399 (695)
T ss_dssp             -EEEETTEEEEEEEET------------TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETT--EEEEEEEEETTTCC
T ss_pred             -EEEECCEEEEEEEeC------------CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCC--CCCEEEEEECCCCc
Confidence             444444444443321            12223334433 2 6788899999987764432210  12789999998876


Q ss_pred             eE
Q 013347          389 LI  390 (444)
Q Consensus       389 ~~  390 (444)
                      ..
T Consensus       400 ~~  401 (695)
T 2bkl_A          400 SE  401 (695)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=1.2e-13  Score=123.68  Aligned_cols=228  Identities=12%  Similarity=0.090  Sum_probs=155.0

Q ss_pred             CCCCCeEEEEEeeCCCeEEEE-ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      .+.....+++|+|+++.++.+ ..++.|..|+....  ..                         .+..+ ...+.++++
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------------~~~~~-~~~~~~l~~   76 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------------PEMHP-SHHQNGHCL   76 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------------EEESS-CSSEEEEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------------EEECC-CCCcceeeE
Confidence            455667899999998745554 45799999998732  11                         12223 257899999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEEE----e-------------cCCcE
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAA----K-------------FDGTF  277 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~----~-------------~d~~v  277 (444)
                      +++|+++++...++ .|.+||..+++...+...     ...+..++++|+|+++++.    +             ..+.|
T Consensus        77 ~~dg~l~v~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l  155 (296)
T 3e5z_A           77 NKQGHLIACSHGLR-RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV  155 (296)
T ss_dssp             CTTCCEEEEETTTT-EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred             CCCCcEEEEecCCC-eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence            99999877666566 899999988776544321     2346789999999988873    2             13466


Q ss_pred             EEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc-ccccccccCC-ceeEE
Q 013347          278 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL-PDIVSLTGSQ-GIEKI  355 (444)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~v~~~  355 (444)
                      ..++.. ++...+..+....+.++|+|+++.+ ++...+..++.+++...     +     .. .....+..+. .+..+
T Consensus       156 ~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~-----g-----~~~~~~~~~~~~~~~p~~i  223 (296)
T 3e5z_A          156 FRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNAR-----G-----ETEYQGVHFTVEPGKTDGL  223 (296)
T ss_dssp             EEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSS-----S-----CEEEEEEEECCSSSCCCSE
T ss_pred             EEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCC-----C-----cCcCCCeEeeCCCCCCCeE
Confidence            667666 5555555666778999999999998 66666677888876311     0     00 0011121122 56789


Q ss_pred             EECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee-eeCCCCCCCceEEEEeccc
Q 013347          356 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF-SFHDKFKQGPLLSVCWSSG  429 (444)
Q Consensus       356 ~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~-spdg~~~~~~~l~~~~~~g  429 (444)
                      +++++|+++++.  +      +.|.+|+.+ ++.+     ..+..+.. +.+++| +||++.     |.++..+|
T Consensus       224 ~~d~~G~l~v~~--~------~~v~~~~~~-g~~~-----~~~~~~~~-~~~~~f~~~d~~~-----L~v~t~~~  278 (296)
T 3e5z_A          224 RVDAGGLIWASA--G------DGVHVLTPD-GDEL-----GRVLTPQT-TSNLCFGGPEGRT-----LYMTVSTE  278 (296)
T ss_dssp             EEBTTSCEEEEE--T------TEEEEECTT-SCEE-----EEEECSSC-CCEEEEESTTSCE-----EEEEETTE
T ss_pred             EECCCCCEEEEc--C------CeEEEECCC-CCEE-----EEEECCCC-ceeEEEECCCCCE-----EEEEcCCe
Confidence            999999977666  5      789999987 4443     34555666 899999 477764     66665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=7.9e-14  Score=127.78  Aligned_cols=226  Identities=12%  Similarity=0.108  Sum_probs=138.8

Q ss_pred             cceEEEEEecCCCeEEEEECC---Ce--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----------
Q 013347          100 VDLQGVSWHQHKHIVAFISGS---TQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----------  164 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~d---g~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----------  164 (444)
                      ..+..++|||||++||+++.+   +.  |.+|++.+ ++..... .. .. +..++|+|||+.|++++.+          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l~-~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKIL-EA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEEE-EE-SE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEEE-cC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            357889999999999987743   34  66666664 3333332 22 23 9999999998888887642          


Q ss_pred             -----------------CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEE
Q 013347          165 -----------------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLA  227 (444)
Q Consensus       165 -----------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  227 (444)
                                       ..|.+|++..+.                         ....+..  . .+..++|+||| +++
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-------------------------~~~~l~~--~-~~~~~~~spdg-~~~  185 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEE-------------------------VIEEFEK--P-RFSSGIWHRDK-IVV  185 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTE-------------------------EEEEEEE--E-TTCEEEEETTE-EEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCe-------------------------EEeeecC--C-CcccccCCCCe-EEE
Confidence                             457777776221                         1011222  1 56789999999 777


Q ss_pred             EEeeCC-----C-eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC--------CcEEEEECCCCceecc-cc
Q 013347          228 SASYES-----S-SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--------GTFYLWETNTWTSEPW-SS  292 (444)
Q Consensus       228 ~~~~d~-----~-~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------~~v~iwd~~~~~~~~~-~~  292 (444)
                      ++..++     . ...||.+.+++...+..+ ..+..+  +|||++|+.++.+        ..|.+||  +++...+ ..
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~  260 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE  260 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred             EEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence            665432     1 234444435555555554 455444  9999998777644        3688888  5555443 35


Q ss_pred             CCCceeE-EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCC
Q 013347          293 TSGFVTG-ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       293 ~~~~v~~-~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~  371 (444)
                      +...+.. +.|+ ++ +++++ ..++....| +.+             ........+...|.+++|+|  .++++++.+.
T Consensus       261 ~~~~~~~~~~~s-dg-~~~~~-~~~~~~~l~-~~~-------------g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~  321 (347)
T 2gop_A          261 VDRGVGQAKIKD-GK-VYFTL-FEEGSVNLY-IWD-------------GEIKPIAKGRHWIMGFDVDE--IVVYLKETAT  321 (347)
T ss_dssp             CCSEEEEEEEET-TE-EEEEE-EETTEEEEE-EES-------------SSEEEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred             CCcccCCccEEc-Cc-EEEEE-ecCCcEEEE-EcC-------------CceEEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence            5677886 9999 88 55544 334555555 431             11111222222789999999  6777777662


Q ss_pred             CccccceEEEEEcCCCC
Q 013347          372 DDIYKGLIAIYDARRTP  388 (444)
Q Consensus       372 ~~~~d~~i~vwd~~~~~  388 (444)
                           ....||.+. ++
T Consensus       322 -----~~~~l~~~~-g~  332 (347)
T 2gop_A          322 -----RLRELFTWD-GE  332 (347)
T ss_dssp             -----SCCEEEEES-SS
T ss_pred             -----ChHHheEeC-Cc
Confidence                 223666665 44

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=1.4e-13  Score=125.00  Aligned_cols=240  Identities=10%  Similarity=0.064  Sum_probs=155.2

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~  180 (444)
                      ...+++. +++.+++...++.|.+||..+ ++....+.  .......+++++++ +++++. .++.|.+||..+......
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEE
Confidence            5667774 345555556789999999997 55544442  34678999999996 666666 689999999884432222


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                      +..+.                    ..++ ......+++  ++..++.+..  ++ .|.++|+.+++.............
T Consensus       121 i~~g~--------------------~~~~-~~~p~~i~~--~~~~lyv~~~~~~~-~v~viD~~t~~~~~~i~~g~~p~~  176 (328)
T 3dsm_A          121 IECPD--------------------MDME-SGSTEQMVQ--YGKYVYVNCWSYQN-RILKIDTETDKVVDELTIGIQPTS  176 (328)
T ss_dssp             EECTT--------------------CCTT-TCBCCCEEE--ETTEEEEEECTTCC-EEEEEETTTTEEEEEEECSSCBCC
T ss_pred             EEcCC--------------------cccc-CCCcceEEE--ECCEEEEEcCCCCC-EEEEEECCCCeEEEEEEcCCCccc
Confidence            22110                    0000 014556777  3445555553  65 999999999876665444555678


Q ss_pred             EEEecCCCeEEEEecC----------CcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeec
Q 013347          259 LKWSPTGDYFFAAKFD----------GTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d----------~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      ++++|+|++++++..+          +.|.++|..+++... +. ........++|+|+++.++++..   .++.++...
T Consensus       177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t  253 (328)
T 3dsm_A          177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEA  253 (328)
T ss_dssp             CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTC
T ss_pred             eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCC
Confidence            9999999977766554          789999999887743 32 12346899999999999887643   566666422


Q ss_pred             CCCCcCCCcCCCCccccccccc-CCceeEEEECCCCCEEEEEe-----cCCCccccceEEEEEcCCCCeEE
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSY-----KGGDDIYKGLIAIYDARRTPLIS  391 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~-----~d~~~~~d~~i~vwd~~~~~~~~  391 (444)
                      ..      +     .....+.. ......++++|++..|.++.     .+      +.|.+||.. ++.+.
T Consensus       254 ~~------~-----~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~------~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          254 DR------V-----PVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ------GIVYRYSPQ-GKLID  306 (328)
T ss_dssp             SS------C-----CSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSE------EEEEEECTT-CCEEE
T ss_pred             Cc------e-----eeeeeecCCCCceEEEEEcCCCCeEEEEcccccccC------CEEEEECCC-CCEEE
Confidence            10      0     00111111 22678999999554454443     33      899999998 77653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=4.4e-13  Score=122.06  Aligned_cols=227  Identities=8%  Similarity=0.028  Sum_probs=148.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----CcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g~v~iw~~~~~~  176 (444)
                      .+.+++|+++|++++++..++.|.+|+..+ ++..... ..+...+.+++|+++++.+++...+    +.|.+||.+...
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~  123 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  123 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence            367899999999887888889999999886 3333332 2456789999999997555554444    589999987332


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------CCCeEEEEEcCCCCceeee
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------ESSSFTIWDVAQGLGTPIR  250 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------d~~~i~iwd~~~~~~~~~~  250 (444)
                      ....+..                       ..+ ...+.+++++|+|+++++...      .+ .|..+|..+++...+.
T Consensus       124 ~~~~~~~-----------------------~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~-~l~~~~~~~~~~~~~~  178 (333)
T 2dg1_A          124 LQDIIED-----------------------LST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLG-GVYYVSPDFRTVTPII  178 (333)
T ss_dssp             CEEEECS-----------------------SSS-CCCEEEEEECTTSCEEEEECCCBTTBCCE-EEEEECTTSCCEEEEE
T ss_pred             EEEEEcc-----------------------Ccc-CCcccceEECCCCCEEEEeccccccCCCc-eEEEEeCCCCEEEEee
Confidence            2111100                       011 257899999999987776553      23 6777776655555444


Q ss_pred             cCCCCeEEEEEecCCCeEE-EEecCCcEEEEECCC-Cc-eec--------cccCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          251 RGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNT-WT-SEP--------WSSTSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~-~~-~~~--------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                      .....+..++|+|+++.|+ +...++.|.+||+.+ ++ ...        +..+ ..+..++++++|++.++. ..++.+
T Consensus       179 ~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~-~~~~~v  256 (333)
T 2dg1_A          179 QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAM-YGQGRV  256 (333)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEE-ETTTEE
T ss_pred             cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEE-cCCCEE
Confidence            4445688999999998664 455678999999964 22 211        1111 467889999999866644 333455


Q ss_pred             EEEEeecCCCCcCCCcCCCCccccccccc------CC-ceeEEEECCCCCEEEEEecC
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLTG------SQ-GIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~v~~~~~spdg~~l~~~~~d  370 (444)
                      ..++.              +...+..+..      +. .+.+++|+||++.|++++.+
T Consensus       257 ~~~d~--------------~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          257 LVFNK--------------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECT--------------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEECC--------------CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            55542              1112222221      12 47899999998877766655

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=7.6e-14  Score=126.84  Aligned_cols=259  Identities=8%  Similarity=-0.080  Sum_probs=163.1

Q ss_pred             CCCeEEEEEccCCCCceeEEe-----cCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeecccccccccc
Q 013347          119 GSTQVIVRDYEDSGKDACILT-----SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGAL  192 (444)
Q Consensus       119 ~dg~v~iw~~~~~~~~~~~~~-----~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  192 (444)
                      .++.|.++|.++ ++....+.     .........+.+..  ++++++. .++.|.+||..+.+....            
T Consensus        15 ~~~~l~~~d~~t-~~~~~~i~~~~n~~~lg~~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~------------   79 (328)
T 3dsm_A           15 SNATLSYYDPAT-CEVENEVFYRANGFKLGDVAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGR------------   79 (328)
T ss_dssp             CCBEEEEEETTT-TEEECSHHHHHHSSCCBSCEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEE------------
T ss_pred             CCceEEEEECCC-CEEhhhhHhhhcCcccCccceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEE------------
Confidence            378999999987 33222111     12234567787743  4555554 469999999985433222            


Q ss_pred             ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCC------CeEEEEEecCCC
Q 013347          193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG------GLSILKWSPTGD  266 (444)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~------~v~~~~~sp~~~  266 (444)
                                   +..  ......++++++++.+++...++ .|.+||..+++.........      ....+++ .+++
T Consensus        80 -------------i~~--~~~p~~i~~~~~g~lyv~~~~~~-~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~  142 (328)
T 3dsm_A           80 -------------ITG--FTSPRYIHFLSDEKAYVTQIWDY-RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKY  142 (328)
T ss_dssp             -------------EEC--CSSEEEEEEEETTEEEEEEBSCS-EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTE
T ss_pred             -------------cCC--CCCCcEEEEeCCCeEEEEECCCC-eEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCE
Confidence                         222  25788999999985444433666 99999999887664333222      4566777 3444


Q ss_pred             eEEEEe-cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcC---------CceEEEEEeecCCCCcCCCcC
Q 013347          267 YFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       267 ~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .+++.. .++.|.++|+.+++.............++++|+|++++++...         ...+..++..           
T Consensus       143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~-----------  211 (328)
T 3dsm_A          143 VYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE-----------  211 (328)
T ss_dssp             EEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT-----------
T ss_pred             EEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC-----------
Confidence            444443 4889999999998874433334456789999999866644322         1456666532           


Q ss_pred             CCCccccccccc--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          337 PVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       337 ~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                        +......+.-  ......++|+||+++|+++.        +.|.+||..++++..   ...+......+..++++|++
T Consensus       212 --t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~--------~~v~~~d~~t~~~~~---~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          212 --TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN--------NDIWRMPVEADRVPV---RPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             --TTEEEEEEECCTTCCCEEEEECTTSCEEEEES--------SSEEEEETTCSSCCS---SCSBCCCSSCEEEEEECTTT
T ss_pred             --CCeEEEEEecCCCCCceeEEEecCCCEEEEEc--------cEEEEEECCCCceee---eeeecCCCCceEEEEEcCCC
Confidence              1222223322  12578999999999998863        469999998877531   11122224567889999965


Q ss_pred             CCCCCceEEEE----eccceeeeeeee
Q 013347          415 KFKQGPLLSVC----WSSGFCCTYPLI  437 (444)
Q Consensus       415 ~~~~~~~l~~~----~~~g~i~~~~~~  437 (444)
                      ..    +....    +.+|.|..|+..
T Consensus       279 g~----lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          279 GE----VYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CC----EEEEECTTSSSEEEEEEECTT
T ss_pred             Ce----EEEEcccccccCCEEEEECCC
Confidence            43    34444    568888888753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.63  E-value=5.8e-14  Score=142.10  Aligned_cols=271  Identities=9%  Similarity=0.018  Sum_probs=164.4

Q ss_pred             ecCCCeEEEEECCCe---EEEEEccCC----CCceeE-----EecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEE
Q 013347          108 HQHKHIVAFISGSTQ---VIVRDYEDS----GKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIW  170 (444)
Q Consensus       108 sp~g~~la~~~~dg~---v~iw~~~~~----~~~~~~-----~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw  170 (444)
                      +|+|++++....++.   -.||.....    +....+     +..+|...+..++|||||++++.+..+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489999988764433   566766532    333322     223344478899999998888877654     359999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC-------------eEE
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------SFT  237 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-------------~i~  237 (444)
                      |+.++.....                        .+.   ...+..++|+|| +.|+.++.++.             .|+
T Consensus       195 dl~tg~~~~~------------------------~~~---~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~  246 (741)
T 1yr2_A          195 GVADGKPLAD------------------------ELK---WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW  246 (741)
T ss_dssp             ETTTCCEEEE------------------------EEE---EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred             ECCCCCCCCc------------------------cCC---CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence            9984432111                        011   112357899999 99998887652             389


Q ss_pred             EEEcCCCCc--eeeecC---CCCeEEEEEecCCCeEEEEecCC-----cEEEEECCCC--c-eeccccCCCceeEEEECC
Q 013347          238 IWDVAQGLG--TPIRRG---FGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW--T-SEPWSSTSGFVTGATWDP  304 (444)
Q Consensus       238 iwd~~~~~~--~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~-----~v~iwd~~~~--~-~~~~~~~~~~v~~~~~sp  304 (444)
                      +|++.++..  ..+...   ...+..+.|+|||++|+..+.++     .|++||+.++  + ...+..+........ +|
T Consensus       247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~  325 (741)
T 1yr2_A          247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG  325 (741)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred             EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence            999987753  223322   23588999999999997766543     8999999887  5 555555554555553 48


Q ss_pred             CCCEEEEEEcCC---ceEEEEEeecCCCCcCCCcCCCCccccccc-ccCC-ceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          305 EGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       305 ~g~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      +|+.|++....+   ..++.+++...           . .....+ ..+. .+..++|+ ++.++++...+      +..
T Consensus       326 dg~~l~~~s~~~~~~~~l~~~d~~~~-----------~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d------g~~  386 (741)
T 1yr2_A          326 VGDQLWFVSGDGAPLKKIVRVDLSGS-----------T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHD------AKS  386 (741)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEECSSS-----------S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEET------TEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCC-----------c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEEC------CEE
Confidence            999888776542   34555554210           0 111222 2333 56677887 55667777766      666


Q ss_pred             EEEEcC-CCCeEEEEEeeeeeC-CCCCCcceeeeeCCCCCCCceEEEEec----cceeeeeee
Q 013347          380 AIYDAR-RTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWS----SGFCCTYPL  436 (444)
Q Consensus       380 ~vwd~~-~~~~~~~~~~~~~~~-~~~~i~~v~~spdg~~~~~~~l~~~~~----~g~i~~~~~  436 (444)
                      +||.+. .+...     ..+.. +...+..++++||++.     +.+.++    .+.|+.|++
T Consensus       387 ~l~~~~~~g~~~-----~~l~~~~~~~v~~~~~s~d~~~-----l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          387 QVLAFDLDGKPA-----GAVSLPGIGSASGLSGRPGDRH-----AYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEEEEETTSCEE-----EECBCSSSCEEEEEECCBTCSC-----EEEEEEETTEEEEEEEEET
T ss_pred             EEEEEeCCCCce-----eeccCCCCeEEEEeecCCCCCE-----EEEEEcCCCCCCEEEEEEC
Confidence            666543 23322     23333 2455778889998765     333333    366766654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.61  E-value=2.4e-13  Score=123.68  Aligned_cols=293  Identities=15%  Similarity=0.115  Sum_probs=177.2

Q ss_pred             EEecCCCeEEEEEC-----CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEEE
Q 013347          106 SWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIW  170 (444)
Q Consensus       106 ~~sp~g~~la~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~iw  170 (444)
                      ...|+++++++...     ++.|.+.|..+ .+....+..+.. + . ++++|||+.++++.          .++.|.+|
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            44688888887764     67999999987 455555443433 3 4 99999998887775          25789999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCcee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTP  248 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~  248 (444)
                      |..+.+....+..+..                   -+.........++|+|||++++++..  ++ .|.++|+.+++...
T Consensus       115 D~~t~~v~~~I~v~~g-------------------~r~~~g~~P~~~a~spDGk~lyVan~~~~~-~VsVID~~t~~vv~  174 (386)
T 3sjl_D          115 DPVTLLPTADIELPDA-------------------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAP-AVGVVDLEGKAFKR  174 (386)
T ss_dssp             CTTTCCEEEEEEETTC-------------------CCCCBSCCGGGEEECTTSSEEEEEECSSSC-EEEEEETTTTEEEE
T ss_pred             ECCCCeEEEEEECCCc-------------------cccccCCCCceEEEcCCCCEEEEEEcCCCC-eEEEEECCCCcEEE
Confidence            9986554443332100                   00000124667999999999998875  45 99999999988766


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC-Cceec-----cccCCCce-eEEEE-CCCCCEEEEEEcCCceEE
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSEP-----WSSTSGFV-TGATW-DPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~-~~~~~-----~~~~~~~v-~~~~~-sp~g~~l~~~~~~~~~~~  320 (444)
                      .....+.  ...+....+.+++.+.||++.+.++.+ ++...     +......+ ....| .++|++++++.  ++.++
T Consensus       175 tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~  250 (386)
T 3sjl_D          175 MLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIH  250 (386)
T ss_dssp             EEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEE
T ss_pred             EEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEE
Confidence            4443321  223333456677778888888888875 44411     11111222 22466 46887666443  46788


Q ss_pred             EEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCCCEEEEEecCCC----ccccceEEEEEcCCCCeEEEEE
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~d~~----~~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      .+++..........+.....  .....+  ......++++|+++.|++...+..    ....+.|.+.|+++++.+...+
T Consensus       251 v~d~~~~~~~v~~~~~~~~~--~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~  328 (386)
T 3sjl_D          251 QIDLSSGDAKFLPAVEALTE--AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  328 (386)
T ss_dssp             EEECTTSSCEECCCEESSCH--HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCcceeecceecccc--ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence            88864321111000000000  000001  113445788999999888754210    0012689999999999875444


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +.      ..++++++++|++-   -+...++.+|.|.+++..
T Consensus       329 vg------~~~~~lavs~D~~~---~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          329 MG------HEIDSINVSQDEKP---LLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EE------EEECEEEECSSSSC---EEEEEETTTTEEEEEETT
T ss_pred             CC------CCcceEEECCCCCe---EEEEEcCCCCeEEEEECC
Confidence            32      25679999999972   034446778899888753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.60  E-value=3.1e-13  Score=119.09  Aligned_cols=238  Identities=12%  Similarity=0.025  Sum_probs=155.2

Q ss_pred             CeEEEEEeeCCCeEEE-E-ecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          145 DVKVLEWRPNGGRSLS-V-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~-~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ...++++++++. +++ + ..++.|.+|+....... ..                        ...+ ...+.+++++++
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~-~~------------------------~~~~-~~~p~~i~~~~~   77 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTT-VL------------------------PFNG-LYQPQGLAVDGA   77 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----E-EC------------------------CCCS-CCSCCCEEECTT
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccc-eE------------------------eeCC-cCCcceeEECCC
Confidence            678999999965 554 5 45689999986522110 00                        0111 246788999999


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc-ccCCCceeEE
Q 013347          223 GRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGA  300 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~v~~~  300 (444)
                      |+++++.. ++ .|.+||........+.. ....+..++++++|+++++...++.|.+|+..+...... ......+.++
T Consensus        78 g~l~v~~~-~~-~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           78 GTVYVTDF-NN-RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  155 (270)
T ss_dssp             CCEEEEET-TT-EEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred             CCEEEEcC-CC-EEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence            98655554 65 99999987765443332 236789999999999777777788999998765544222 2233467899


Q ss_pred             EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      +++++|++++ +...+..+..++....             ........+ ..+..++++++|.++++...+      +.|
T Consensus       156 ~~~~~g~l~v-~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~------~~v  215 (270)
T 1rwi_B          156 AVDNSGNVYV-TDTDNNRVVKLEAESN-------------NQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQV  215 (270)
T ss_dssp             EECTTCCEEE-EEGGGTEEEEECTTTC-------------CEEECCCSSCCSEEEEEECTTCCEEEEETTT------SCE
T ss_pred             EEeCCCCEEE-EECCCCEEEEEecCCC-------------ceEeecccCCCCceEEEECCCCCEEEEECCC------CcE
Confidence            9999998544 4444455555553210             000111112 367899999999766665555      789


Q ss_pred             EEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeeeecc
Q 013347          380 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       380 ~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                      .+|+........     ....+...+.+++++++|++     ......+++|..|.+....+
T Consensus       216 ~~~~~~~~~~~~-----~~~~~~~~p~~i~~~~~g~l-----~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          216 VKLLAGSTTSTV-----LPFTGLNTPLAVAVDSDRTV-----YVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EEECTTCSCCEE-----CCCCSCSCEEEEEECTTCCE-----EEEEGGGTEEEEECCCGGGS
T ss_pred             EEEcCCCCccee-----eccCCCCCceeEEECCCCCE-----EEEECCCCEEEEEcCCCccc
Confidence            999997654431     11122356789999998864     66678899999999876554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=4.2e-12  Score=116.97  Aligned_cols=291  Identities=9%  Similarity=-0.060  Sum_probs=169.3

Q ss_pred             EecCCCeEEEEEC--CC---eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcEEEEe
Q 013347          107 WHQHKHIVAFISG--ST---QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWA  171 (444)
Q Consensus       107 ~sp~g~~la~~~~--dg---~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v~iw~  171 (444)
                      ..|+++++.+...  ..   .|.++|..+ ++....+..+. .+  .++++|||+.++++..          ++.|.+||
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t-~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCC-CeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence            3467776666543  22   789999987 45444443232 22  8999999888887752          57899999


Q ss_pred             cCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceee-
Q 013347          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPI-  249 (444)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~-  249 (444)
                      ..+.+....+..+.                 ..... + ......++|+|||++|++++.. .+.|.++| .+++.... 
T Consensus       104 ~~t~~~~~~i~~~~-----------------~~~~~-~-g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~  163 (373)
T 2mad_H          104 PVTFLPIADIELPD-----------------APRFD-V-GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL  163 (373)
T ss_pred             CCCCcEEEEEECCC-----------------ccccc-c-CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE
Confidence            87444333332210                 00000 0 1235689999999999998753 23899999 88876554 


Q ss_pred             ecCCCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceeccc------cCCCc-eeEEEECCCCCEEEEEEcCCceEEE
Q 013347          250 RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWS------STSGF-VTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~~~------~~~~~-v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      ....+.   +.+.|++ +.+++.+.||++.++|. +++.....      ..... .....+.+++..++... ..+.+..
T Consensus       164 i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~v  238 (373)
T 2mad_H          164 LSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQ  238 (373)
T ss_pred             cCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEE
Confidence            443332   4455655 44567778999999999 77654111      11111 23355666665544433 3356777


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCEEEEEecCCCc----cccceEEEEEcCCCCeEEEEEee
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIG  396 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~~~~~  396 (444)
                      +++.......... +........... .......++++||++.|+++..+...    ...+.|.++|+.+++.+     .
T Consensus       239 id~~~~~~~v~~~-~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~  312 (373)
T 2mad_H          239 ADISAAGATNKAP-IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-----S  312 (373)
T ss_pred             EeccCCcceEeee-eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE-----E
Confidence            7763221000000 000000000000 00134457899999988887643110    01268999999998776     3


Q ss_pred             eeeCCCCCCcceeeeeCCCCCCCceEEEE-eccceeeeeeee
Q 013347          397 FIRGPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI  437 (444)
Q Consensus       397 ~~~~~~~~i~~v~~spdg~~~~~~~l~~~-~~~g~i~~~~~~  437 (444)
                      .+.. .....+++|+|||++    ++.++ +.++.|.++++.
T Consensus       313 ~i~~-g~~p~~i~~s~Dg~~----~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          313 QISL-GHDVDAISVAQDGGP----DLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEC-CCCcCeEEECCCCCe----EEEEEcCCCCeEEEEECC
Confidence            3332 335789999999984    24444 468999988864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.59  E-value=1.2e-11  Score=110.43  Aligned_cols=259  Identities=10%  Similarity=0.043  Sum_probs=170.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .+.+++++++|++.++...++.|.+|+..  ++........+...+.++++.+++..+++...++.|..||.. .. ...
T Consensus        21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~~~   96 (300)
T 2qc5_A           21 GPYGITSSEDGKVWFTQHKANKISSLDQS--GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-FTE   96 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred             CcceeeECCCCCEEEEcCCCCeEEEECCC--CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-eEE
Confidence            47899999999988776678999999877  333332222344678999999986545544446889999876 22 111


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLSI  258 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~~  258 (444)
                      +.                       +... ...+.++++.++|+++++...++ .|..||.. ++.....  .....+..
T Consensus        97 ~~-----------------------~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           97 YP-----------------------LPQP-DSGPYGITEGLNGDIWFTQLNGD-RIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             EE-----------------------CSST-TCCEEEEEECSTTCEEEEETTTT-EEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             ec-----------------------CCCC-CCCCccceECCCCCEEEEccCCC-eEEEECCC-CCEEEccCCCCCCCcee
Confidence            11                       1111 25688999999998777665565 89999987 5444332  13467899


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      ++++++++++++...++.|..||. +++...+  ......+..++++++|++.+ +......+..++. +          
T Consensus       151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~-~----------  217 (300)
T 2qc5_A          151 ITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITT-T----------  217 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-T----------
T ss_pred             EEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcC-C----------
Confidence            999999996676666788999998 5555332  23445689999999997655 4444455555543 1          


Q ss_pred             CCCccccc-ccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          337 PVDLPDIV-SLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       337 ~~~~~~~~-~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                         ..... .+... ..+.+++++++|++.++...+      +.|..|+. +++....    .+......+.+++++++|
T Consensus       218 ---g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~------~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~~~~g  283 (300)
T 2qc5_A          218 ---GEISEYDIPTPNARPHAITAGKNSEIWFTEWGA------NQIGRITN-DNTIQEY----QLQTENAEPHGITFGKDG  283 (300)
T ss_dssp             ---CCEEEEECSSTTCCEEEEEECSTTCEEEEETTT------TEEEEECT-TSCEEEE----ECCSTTCCCCCEEECTTS
T ss_pred             ---CcEEEEECCCCCCCceEEEECCCCCEEEeccCC------CeEEEECC-CCcEEEE----ECCccCCccceeEeCCCC
Confidence               11000 11112 268899999999966665444      78999998 4444311    123334568899999988


Q ss_pred             CC
Q 013347          415 KF  416 (444)
Q Consensus       415 ~~  416 (444)
                      ++
T Consensus       284 ~l  285 (300)
T 2qc5_A          284 SV  285 (300)
T ss_dssp             CE
T ss_pred             CE
Confidence            74

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=2.5e-13  Score=137.46  Aligned_cols=245  Identities=11%  Similarity=0.044  Sum_probs=155.1

Q ss_pred             ceEEEEEecCCCeEEEEECC-----CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCc---------
Q 013347          101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG---------  166 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~---------  166 (444)
                      .+..++|||||++||+++.+     ..|++||+.+ ++.....  .+...+..++|+|| +.++.+..++.         
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-g~~~~~~--~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-GKPLADE--LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-CCEEEEE--EEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-CCCCCcc--CCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            58899999999999987643     4699999987 4332221  11222357899999 99988887643         


Q ss_pred             -----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC----CeEE
Q 013347          167 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFT  237 (444)
Q Consensus       167 -----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~~i~  237 (444)
                           |++|++.+......                     ++.....+ ...+..+.|+|||++|+..+.++    ..|+
T Consensus       240 ~~~~~v~~~~lgt~~~~~~---------------------lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQ---------------------PVFATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTVH  297 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCE---------------------EEECCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred             CCCCEEEEEECCCCchhCE---------------------EEeccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence                 77888763322111                     11111112 13588999999999998877542    2899


Q ss_pred             EEEcCCC--C-ceeeecCCCCeEEEEEecCCCeEEEEec----CCcEEEEECCCC--ceeccc-cCCCceeEEEECCCCC
Q 013347          238 IWDVAQG--L-GTPIRRGFGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTW--TSEPWS-STSGFVTGATWDPEGR  307 (444)
Q Consensus       238 iwd~~~~--~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~--~~~~~~-~~~~~v~~~~~sp~g~  307 (444)
                      +||+.++  + ...+..+...+.... +|+|+.|+..+.    ++.|.+||+.++  +...+. .+...+..++|+ + .
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~-~  374 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G-N  374 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B-T
T ss_pred             EEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C-C
Confidence            9999887  5 556666655555553 489998877665    345999999874  333333 444456677776 3 4


Q ss_pred             EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--CceeEEEECCCCCEEEEEe-cCCCccccceEEEEEc
Q 013347          308 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDA  384 (444)
Q Consensus       308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~-~d~~~~~d~~i~vwd~  384 (444)
                      .+++....++....+.+..            .+...+.+..+  ..+..++++|+++.|+... ....   .++|++||+
T Consensus       375 ~lv~~~~~dg~~~l~~~~~------------~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~---P~~i~~~d~  439 (741)
T 1yr2_A          375 RLFASYIHDAKSQVLAFDL------------DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ---PATVLALDP  439 (741)
T ss_dssp             EEEEEEEETTEEEEEEEET------------TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE---EEEEEEEET
T ss_pred             EEEEEEEECCEEEEEEEeC------------CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC---CCEEEEEEC
Confidence            4444444444444443321            12233334432  2688899999997655332 2221   288999999


Q ss_pred             CCCCe
Q 013347          385 RRTPL  389 (444)
Q Consensus       385 ~~~~~  389 (444)
                      .+++.
T Consensus       440 ~tg~~  444 (741)
T 1yr2_A          440 ATAKT  444 (741)
T ss_dssp             TTTEE
T ss_pred             CCCcE
Confidence            88763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.5e-12  Score=117.48  Aligned_cols=240  Identities=8%  Similarity=0.097  Sum_probs=156.0

Q ss_pred             eEEEEEecCCCeEEE-------EECCCeEEEEEccCCCCceeEEe---cCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347          102 LQGVSWHQHKHIVAF-------ISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (444)
Q Consensus       102 v~~~~~sp~g~~la~-------~~~dg~v~iw~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~  171 (444)
                      ..+++|+++|+++++       ...++.|.+|+..+ ++......   .++...+.+++++++++.++++...+.|.+|+
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d   98 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-CcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence            678999999988877       56788999999775 33332221   12446789999999845666666566788898


Q ss_pred             cCCCCCccee-eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC---------------CCe
Q 013347          172 PSYPGNAASV-RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE---------------SSS  235 (444)
Q Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------------~~~  235 (444)
                      .+ . ....+ ...                     ........+.+++++++|+++++...+               + .
T Consensus        99 ~~-g-~~~~~~~~~---------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~-~  154 (314)
T 1pjx_A           99 TD-G-TFEEIAKKD---------------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG-S  154 (314)
T ss_dssp             TT-S-CEEECCSBC---------------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE-E
T ss_pred             CC-C-CEEEEEecc---------------------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC-e
Confidence            76 3 22211 110                     001112458899999999877766554               3 6


Q ss_pred             EEEEEcCCCCceeeecCCCCeEEEEEe----cCCCeEEEE-ecCCcEEEEECC-CCce------eccccCC-CceeEEEE
Q 013347          236 FTIWDVAQGLGTPIRRGFGGLSILKWS----PTGDYFFAA-KFDGTFYLWETN-TWTS------EPWSSTS-GFVTGATW  302 (444)
Q Consensus       236 i~iwd~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~~d~~v~iwd~~-~~~~------~~~~~~~-~~v~~~~~  302 (444)
                      |..||.. ++...+.........++|+    |+++.++.+ ..++.|.+||.. +++.      ..+..+. ..+..+++
T Consensus       155 l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          155 IYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             EEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             EEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence            7777765 5444444444567889999    999766544 567899999986 4432      1122333 56789999


Q ss_pred             CCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEE
Q 013347          303 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAI  381 (444)
Q Consensus       303 sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~v  381 (444)
                      +++|++.++.. .+..+..++..             +...+..+..+. .+.+++|+|+|++|.+++.+.     +.|..
T Consensus       234 d~~G~l~v~~~-~~~~i~~~d~~-------------~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-----~~l~~  294 (314)
T 1pjx_A          234 DEDNNLLVANW-GSSHIEVFGPD-------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-----NAVWK  294 (314)
T ss_dssp             BTTCCEEEEEE-TTTEEEEECTT-------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT-----TEEEE
T ss_pred             CCCCCEEEEEc-CCCEEEEEcCC-------------CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-----CeEEE
Confidence            99998766543 33445555421             122333344443 789999999999666665432     78999


Q ss_pred             EEcCC
Q 013347          382 YDARR  386 (444)
Q Consensus       382 wd~~~  386 (444)
                      |++..
T Consensus       295 ~~~~~  299 (314)
T 1pjx_A          295 FEWQR  299 (314)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            99875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=1.8e-12  Score=116.88  Aligned_cols=247  Identities=12%  Similarity=0.130  Sum_probs=157.4

Q ss_pred             CCCeEEEEEeeCCCeEEE-------EecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE
Q 013347          143 QRDVKVLEWRPNGGRSLS-------VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  215 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~-------~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  215 (444)
                      -....+++|++++..+++       ...++.|.+|+....+. ..+...                    ...++ ...+.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~--------------------~~~~~-~~~~~   74 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKP--------------------EVNGY-GGIPA   74 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECC--------------------EETTE-ECCEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEec--------------------ccCCC-CCCCc
Confidence            345688999988644444       25678999999763321 111100                    00112 25688


Q ss_pred             EEEEccC-CCeEEEEeeCCCeEEEEEcCCCCceee-ecC-----CCCeEEEEEecCCCeEEEEecC--------------
Q 013347          216 ALSWGPD-GRYLASASYESSSFTIWDVAQGLGTPI-RRG-----FGGLSILKWSPTGDYFFAAKFD--------------  274 (444)
Q Consensus       216 ~~~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~-----~~~v~~~~~sp~~~~l~~~~~d--------------  274 (444)
                      +++++++ |+++++ ...+ .|.+||.. ++...+ ...     ...+.+++++++|+++++...+              
T Consensus        75 ~i~~~~~~g~l~v~-~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~  151 (314)
T 1pjx_A           75 GCQCDRDANQLFVA-DMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEECSSSSEEEEE-ETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             eEEEecCCCcEEEE-ECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCC
Confidence            9999999 665544 4444 79999988 655443 221     1357899999999887776654              


Q ss_pred             -CcEEEEECCCCceeccccCCCceeEEEEC----CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC
Q 013347          275 -GTFYLWETNTWTSEPWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  349 (444)
Q Consensus       275 -~~v~iwd~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (444)
                       +.|..||.. ++...+..+......++|+    |+++.++++...+..++.++.....     .+.  .......+..+
T Consensus       152 ~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g-----~~~--~~~~~~~~~~~  223 (314)
T 1pjx_A          152 FGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-----KIE--NKKVWGHIPGT  223 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-----EEE--EEEEEEECCCC
T ss_pred             CCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC-----ccc--cceEEEECCCC
Confidence             567778776 5554443344456889999    9998877776666777777753110     000  00111222222


Q ss_pred             --CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEec
Q 013347          350 --QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  427 (444)
Q Consensus       350 --~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~  427 (444)
                        ..+..++++++|+++++...+      +.|.+||.++++..     ..+..+...+.+++|+|||++    +......
T Consensus       224 ~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~----l~v~~~~  288 (314)
T 1pjx_A          224 HEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKT----IFVTEHE  288 (314)
T ss_dssp             SSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSE----EEEEETT
T ss_pred             CCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCE----EEEEeCC
Confidence              346789999999988877666      89999999866543     234455567889999999874    2333345


Q ss_pred             cceeeeeeee
Q 013347          428 SGFCCTYPLI  437 (444)
Q Consensus       428 ~g~i~~~~~~  437 (444)
                      +|.|..|++.
T Consensus       289 ~~~l~~~~~~  298 (314)
T 1pjx_A          289 NNAVWKFEWQ  298 (314)
T ss_dssp             TTEEEEEECS
T ss_pred             CCeEEEEeCC
Confidence            6788877764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.54  E-value=3.1e-12  Score=118.55  Aligned_cols=292  Identities=11%  Similarity=0.068  Sum_probs=173.4

Q ss_pred             cCCCeEEEEEC-C----CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEEEecC
Q 013347          109 QHKHIVAFISG-S----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIWAPS  173 (444)
Q Consensus       109 p~g~~la~~~~-d----g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~iw~~~  173 (444)
                      ++++++++... +    +.|.++|..+ .+....+..+. .+  .++++||+++++++.          .++.|.++|..
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            46666666553 2    6999999988 45555544343 23  899999998888876          35789999998


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCceeeecC
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTPIRRG  252 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~~~~~  252 (444)
                      +.+....+..+..                   -+.........++|+|||++++++... .+.|.+.|+.+.+......-
T Consensus       158 t~~vv~~I~v~g~-------------------~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          158 TFLPIADIELPDA-------------------PRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             TCCEEEEEEETTC-------------------CCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEEECCCc-------------------cccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            5554433322100                   000001245678999999999998753 33899999999877654433


Q ss_pred             CCCeEEEEEecCC-CeEEEEecCCcEEEEECCCCceec-----cccCCCc-eeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          253 FGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEP-----WSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       253 ~~~v~~~~~sp~~-~~l~~~~~d~~v~iwd~~~~~~~~-----~~~~~~~-v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      .+.   ....|++ +.+++.+.||++.+.+..+++...     +...... ...+.|.+++..+++... .+.++.+++.
T Consensus       219 ~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~  294 (426)
T 3c75_H          219 PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLT  294 (426)
T ss_dssp             CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEEC
T ss_pred             CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEecc
Confidence            221   2334443 455666778888877875554421     1111111 134578999888776644 4678888874


Q ss_pred             cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCc----cccceEEEEEcCCCCeEEEEEeeeeeCC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGP  401 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~  401 (444)
                      .................+..-........++++||++++++...+...    ...+.|.++|+.+.+.+...++.     
T Consensus       295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-----  369 (426)
T 3c75_H          295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-----  369 (426)
T ss_dssp             SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----
T ss_pred             CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----
Confidence            321000000000000000000000023347899999988877532100    01268999999999887444332     


Q ss_pred             CCCCcceeeeeCCC-CCCCceEEEEeccceeeeeeee
Q 013347          402 GDNPKPVAFSFHDK-FKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       402 ~~~i~~v~~spdg~-~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                       .....++|+|||+ .    +...++.++.|.++++.
T Consensus       370 -~~P~gia~spDg~~~----lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          370 -HEIDSINVSQDAEPL----LYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             -EEECEEEECCSSSCE----EEEEETTTTEEEEEETT
T ss_pred             -CCcCeEEEccCCCEE----EEEEcCCCCeEEEEECC
Confidence             2467999999998 4    34455578999988863

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=2.8e-12  Score=116.68  Aligned_cols=254  Identities=10%  Similarity=-0.017  Sum_probs=157.8

Q ss_pred             EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecCC------CCCeEEEEEeeCCCeEEEEec--CC
Q 013347          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSDS------QRDVKVLEWRPNGGRSLSVGC--KG  165 (444)
Q Consensus       104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~~------~~~v~~l~~s~~~~~ll~~~~--dg  165 (444)
                      .++++|||+++++++          .++.|.+||..+ .+....+..+.      ......++|+|||++++++..  ++
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~  160 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  160 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence            399999999988765          367899999998 44444332221      224667999999988888764  58


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC-C
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ-G  244 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~-~  244 (444)
                      .|.++|+.+.+....+...                           + . ...+....+.+++.+.|| .+.+.++.. +
T Consensus       161 ~VsVID~~t~~vv~tI~v~---------------------------g-~-~~~~P~g~~~~~~~~~DG-~~~~v~~~~~g  210 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVP---------------------------D-C-YHIFPTAPDTFFMHCRDG-SLAKVAFGTEG  210 (386)
T ss_dssp             EEEEEETTTTEEEEEEECC---------------------------S-E-EEEEEEETTEEEEEETTS-CEEEEECCSSS
T ss_pred             eEEEEECCCCcEEEEEECC---------------------------C-c-ceeecCCCceeEEECCCC-CEEEEECCCCC
Confidence            9999999855443333221                           1 0 122222334555556665 666666654 3


Q ss_pred             Cceeee-----cCCCCeE-EEEEe-cCCCeEEEEecCCcEEEEECCCCcee---ccc----------cCCCceeEEEECC
Q 013347          245 LGTPIR-----RGFGGLS-ILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE---PWS----------STSGFVTGATWDP  304 (444)
Q Consensus       245 ~~~~~~-----~~~~~v~-~~~~s-p~~~~l~~~~~d~~v~iwd~~~~~~~---~~~----------~~~~~v~~~~~sp  304 (444)
                      +.....     .....+. ..+|. ++|++++ .+.+|+|++.|+.++...   .+.          -.......++++|
T Consensus       211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~  289 (386)
T 3sjl_D          211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR  289 (386)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred             eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence            331111     1112221 24664 6776555 556899999999876531   111          0122334577899


Q ss_pred             CCCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCcc
Q 013347          305 EGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDI  374 (444)
Q Consensus       305 ~g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~  374 (444)
                      +++.+++....         ...++.++..             +.+.++.+.-...+++++++||++ +|+++...+   
T Consensus       290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-------------t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~---  353 (386)
T 3sjl_D          290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAK-------------TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD---  353 (386)
T ss_dssp             TTTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT---
T ss_pred             CCCeEEEEeccccccccCCCCCEEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC---
Confidence            99988876431         2456666642             344455555444788999999997 777766532   


Q ss_pred             ccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          375 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       375 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                        +.|.++|..+++.+     ..+.. ......+.+++|
T Consensus       354 --~~VsViD~~t~k~~-----~~i~~-~~~p~~l~~s~d  384 (386)
T 3sjl_D          354 --KTLYIHDAESGEEL-----RSVNQ-LGHGPQVITTAD  384 (386)
T ss_dssp             --TEEEEEETTTCCEE-----EEECC-CCSSCCEEEECC
T ss_pred             --CeEEEEECCCCcEE-----EEecC-CCCCceeEECCc
Confidence              89999999998876     33432 344567888887

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.53  E-value=5.1e-12  Score=118.10  Aligned_cols=236  Identities=15%  Similarity=0.184  Sum_probs=150.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC--cEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg--~v~iw~~~~~~~~  178 (444)
                      ....++|+++|+++++...++.|++|+..+ +....... . ..... ++|+++++.++++..++  .|.+|+.......
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~~~~~-~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVTTVHP-G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEEEeec-c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            578999999999777777789999999986 33333332 2 23334 99999988888877765  6777776522211


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee----ecCC-
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----RRGF-  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~----~~~~-  253 (444)
                      ..+                      ..+..+....+.+++++|++..|+.+..++ .|..||..++....+    .... 
T Consensus       208 ~~~----------------------g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-~I~~~d~~~~~~~~~~~~~~~g~~  264 (409)
T 3hrp_A          208 TRI----------------------GQLGSTFSGKIGAVALDETEEWLYFVDSNK-NFGRFNVKTQEVTLIKQLELSGSL  264 (409)
T ss_dssp             EEE----------------------EECCTTSCSCCCBCEECTTSSEEEEECTTC-EEEEEETTTCCEEEEEECCCCSCC
T ss_pred             EEe----------------------eeccchhcCCcEEEEEeCCCCeEEEEECCC-cEEEEECCCCCEEEEecccccCCC
Confidence            111                      111121235678899999555566666666 999999987764433    1111 


Q ss_pred             CCe-E-EEEEecC-CCeEEEEecCCcEEEEECCCCceeccccC---------------CCceeEEEECCCCCEEEEEEc-
Q 013347          254 GGL-S-ILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWSST---------------SGFVTGATWDPEGRMILLAFA-  314 (444)
Q Consensus       254 ~~v-~-~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~sp~g~~l~~~~~-  314 (444)
                      ..- . .++|+|+ +.++++-..++.|+.|+.... ...+.++               -.....++++|+|+ |+++.. 
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~  342 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGF  342 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETT
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCC
Confidence            111 3 8999995 555566667889999998754 3222222               23578999999999 555655 


Q ss_pred             CCceEEEEEeecCCCCcCCCcCCCCccccccccc----------------CCceeEEEECCCCCEEEEEecCCCccccce
Q 013347          315 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG----------------SQGIEKIAWDASGERLAVSYKGGDDIYKGL  378 (444)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~~~d~~~~~d~~  378 (444)
                      ....++.+++.+.              .+.++.+                ......++++++|.++++-..+      +.
T Consensus       343 ~~~~I~~~~~~~G--------------~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n------~~  402 (409)
T 3hrp_A          343 KGYCLRKLDILDG--------------YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG------KA  402 (409)
T ss_dssp             TTCEEEEEETTTT--------------EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT------CE
T ss_pred             CCCEEEEEECCCC--------------EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC------Ce
Confidence            6667776663211              1111111                1257899999998766665554      78


Q ss_pred             EEEEEcC
Q 013347          379 IAIYDAR  385 (444)
Q Consensus       379 i~vwd~~  385 (444)
                      |+.++++
T Consensus       403 Ir~i~~e  409 (409)
T 3hrp_A          403 IRKYAVE  409 (409)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8887753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.52  E-value=4.7e-12  Score=118.34  Aligned_cols=247  Identities=9%  Similarity=-0.018  Sum_probs=152.2

Q ss_pred             CCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          144 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      .....|+|++++. |+++.. ++.|++||.+.... .                        ......  .... ++|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~-~------------------------~~~~~~--~~~~-ia~~~~  181 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKV-T------------------------TVHPGF--KGGK-PAVTKD  181 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEE-E------------------------EEEETC--CBCB-CEECTT
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEE-E------------------------EeeccC--CCCc-eeEecC
Confidence            4678999999955 555544 58999999873211 1                        111111  2334 999999


Q ss_pred             CCeEEEEeeCCC-eEEEEEcCCCCceeee----c-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc----c-
Q 013347          223 GRYLASASYESS-SFTIWDVAQGLGTPIR----R-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----S-  291 (444)
Q Consensus       223 ~~~l~~~~~d~~-~i~iwd~~~~~~~~~~----~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~----~-  291 (444)
                      ++.|+++..+++ .|.+|+...+......    . ....+.+++++|++..|+.+..++.|+.||..++....+    . 
T Consensus       182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~  261 (409)
T 3hrp_A          182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS  261 (409)
T ss_dssp             SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred             CCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence            999988887654 7889988766553333    2 346678899999555565577788999999988765433    1 


Q ss_pred             cCCCce-e-EEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc-cccccccCCceeEEEECCCCCEEEEEe
Q 013347          292 STSGFV-T-GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSY  368 (444)
Q Consensus       292 ~~~~~v-~-~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~  368 (444)
                      +....- . .++|+|++..|+++......++.++.......+.+........ .............++++|+|+++++-+
T Consensus       262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            222222 3 9999997667777766666666665321000000000000000 000000012478999999999666554


Q ss_pred             -cCCCccccceEEEEEcCCCCeEEEEEeeeeeCC---------------CCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          369 -KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP---------------GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       369 -~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------------~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                       .+      +.|+.|++.++.+.      .+.++               -..+..++++++|++     ..+.+.+++|.
T Consensus       342 ~~~------~~I~~~~~~~G~v~------~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l-----yVad~~n~~Ir  404 (409)
T 3hrp_A          342 FKG------YCLRKLDILDGYVS------TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY-----WIAEAWGKAIR  404 (409)
T ss_dssp             TTT------CEEEEEETTTTEEE------EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE-----EEEESTTCEEE
T ss_pred             CCC------CEEEEEECCCCEEE------EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE-----EEEECCCCeEE
Confidence             44      89999998777643      12222               134677888888653     66678888988


Q ss_pred             eeee
Q 013347          433 TYPL  436 (444)
Q Consensus       433 ~~~~  436 (444)
                      .+.+
T Consensus       405 ~i~~  408 (409)
T 3hrp_A          405 KYAV  408 (409)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.51  E-value=4.6e-11  Score=110.07  Aligned_cols=235  Identities=11%  Similarity=-0.000  Sum_probs=148.7

Q ss_pred             EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC------CCCCeEEEEEeeCCCeEEEEec--CC
Q 013347          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--KG  165 (444)
Q Consensus       104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~--dg  165 (444)
                      .+++||||++++++.          .++.|.+||..+ .+....+..+      +......++|+|||++++++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence            899999999999875          367899999986 3333332212      1133568999999998888874  47


Q ss_pred             cEEEEecCCCCCcce-eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC-eEEEEeeCCCeEEEEEcCC
Q 013347          166 GICIWAPSYPGNAAS-VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-YLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~~i~iwd~~~  243 (444)
                      .|.++| .+.+.... +..+                           .   ++.+.|+++ .+++.+.|| .+.++|. +
T Consensus       149 ~v~viD-~t~~~~~~~i~~~---------------------------~---~~~~~~~~~~~~~~~~~dg-~~~~vd~-~  195 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSP---------------------------T---CYHIHPGAPSTFYLLCAQG-GLAKTDH-A  195 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCC---------------------------c---eEEEEeCCCceEEEEcCCC-CEEEEEC-C
Confidence            899999 74433222 2111                           1   234445543 445555676 8888988 6


Q ss_pred             CCceeee------cCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCcee---cccc----------CCCceeEEEEC
Q 013347          244 GLGTPIR------RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSS----------TSGFVTGATWD  303 (444)
Q Consensus       244 ~~~~~~~------~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~----------~~~~v~~~~~s  303 (444)
                      ++.....      ....++ ....+.+++..++..+..+.+.+.|+.+....   .+..          .......+.++
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s  275 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence            6554221      111221 23556777666554457789999999765321   1110          11223447889


Q ss_pred             CCCCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCc
Q 013347          304 PEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDD  373 (444)
Q Consensus       304 p~g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~  373 (444)
                      |+++.++++...         ...+..++..             +.+.+.++........++|+|||+ +++++....  
T Consensus       276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~-------------t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~--  340 (373)
T 2mad_H          276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-------------VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT--  340 (373)
T ss_pred             CCCCEEEEEeccCCcccccCCCCeEEEEECC-------------CCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC--
Confidence            999988876542         2356666642             344445554444678999999999 677766432  


Q ss_pred             cccceEEEEEcCCCCeE
Q 013347          374 IYKGLIAIYDARRTPLI  390 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~  390 (444)
                         +.|.+||+.+++.+
T Consensus       341 ---~~V~ViD~~t~~vv  354 (373)
T 2mad_H          341 ---EVLHIYDAGAGDQD  354 (373)
T ss_pred             ---CeEEEEECCCCCEE
Confidence               89999999998876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.51  E-value=3.8e-11  Score=107.37  Aligned_cols=226  Identities=14%  Similarity=0.222  Sum_probs=148.3

Q ss_pred             CCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          142 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       142 ~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      ...-..+..|+++++.++.+.. .+.|..|+...... .                         .+..  ...+.+++++
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~-------------------------~~~~--~~~~~~i~~~   62 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-Q-------------------------RVTM--DAPVSSVALR   62 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-E-------------------------EEEC--SSCEEEEEEB
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-E-------------------------EEeC--CCceEEEEEC
Confidence            3345568899997777777665 58999999873221 1                         1111  2578999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEEEecC-----------CcEEEEECCC
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFAAKFD-----------GTFYLWETNT  284 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d-----------~~v~iwd~~~  284 (444)
                      ++|+++++ . ++ .|.+||..+++...+...     ...+..++++|+|+++++....           +.|..+|.. 
T Consensus        63 ~dG~l~v~-~-~~-~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-  138 (297)
T 3g4e_A           63 QSGGYVAT-I-GT-KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-  138 (297)
T ss_dssp             TTSSEEEE-E-TT-EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-
T ss_pred             CCCCEEEE-E-CC-eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-
Confidence            99995544 3 44 799999988766554432     1347889999999976654321           234444443 


Q ss_pred             CceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          285 WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       285 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ++...+.......+.++|+|+++.++++......++.+++.....    .+.  ..+....+..+. ....++++++|++
T Consensus       139 g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G----~~~--~~~~~~~~~~~~~~p~g~~~d~~G~l  212 (297)
T 3g4e_A          139 HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG----QIS--NRRSVYKLEKEEQIPDGMCIDAEGKL  212 (297)
T ss_dssp             SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC----CEE--EEEEEEECCGGGCEEEEEEEBTTSCE
T ss_pred             CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC----ccc--CcEEEEECCCCCCCCCeeEECCCCCE
Confidence            333333334455789999999998887776667777777521100    000  011112222222 5788999999987


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCCC
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF  416 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~~  416 (444)
                      .++...+      +.|.+||.++++++     ..+..+...+++++|+ ||++.
T Consensus       213 wva~~~~------~~v~~~d~~tG~~~-----~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          213 WVACYNG------GRVIRLDPVTGKRL-----QTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EEEEETT------TEEEEECTTTCCEE-----EEEECSSSBEEEEEEESGGGCE
T ss_pred             EEEEcCC------CEEEEEcCCCceEE-----EEEECCCCCceEEEEeCCCCCE
Confidence            7776665      88999999988765     3455566678999998 88764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.50  E-value=1e-12  Score=120.09  Aligned_cols=175  Identities=10%  Similarity=0.015  Sum_probs=128.9

Q ss_pred             cccceEEEEEecCCCeEEEEECCCeEEEEEccCCC---------CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (444)
Q Consensus        98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~---------~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~  168 (444)
                      ....++.+++++...++++|+.++ +.+|++....         ...... ..+.. |+.|+|  |+..|+++ .++.|+
T Consensus        36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            333689999999999999998874 5669876421         111112 24666 999999  75666666 889999


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  248 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~  248 (444)
                      +||+.......                         ....+. ..+.++.+.+.  .++++..|| .|.+||+.++....
T Consensus       110 v~dv~sl~~~~-------------------------~~~~~~-~~v~~i~~~~p--~~av~~~dG-~L~v~dl~~~~~~~  160 (388)
T 1xip_A          110 SLDLEELSEFR-------------------------TVTSFE-KPVFQLKNVNN--TLVILNSVN-DLSALDLRTKSTKQ  160 (388)
T ss_dssp             EEESSSTTCEE-------------------------EEEECS-SCEEEEEECSS--EEEEEETTS-EEEEEETTTCCEEE
T ss_pred             EEEchhhhccC-------------------------ccceee-cceeeEEecCC--CEEEEECCC-CEEEEEccCCcccc
Confidence            99998433211                         122332 56777777654  288888998 99999999876654


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---ecc------c---cCCCceeEEEECCCCCEEEEE
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPW------S---STSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~------~---~~~~~v~~~~~sp~g~~l~~~  312 (444)
                         +...|++++|+|+|  ++.|..||++++|+..+++.   ..+      .   +|...|.++.|.+++.++++-
T Consensus       161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence               34689999999999  67888999999999988773   222      1   377889999999999988753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.49  E-value=7.5e-11  Score=105.25  Aligned_cols=234  Identities=9%  Similarity=-0.026  Sum_probs=154.7

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..+.+++++++|+++++...++.|..|+..  +.............+.++++.+++..+++...++.|.+|+.. . ...
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~  132 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-KIR  132 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-CEE
Confidence            358899999999988776668889999876  333222222345678999999986544444456889999873 2 111


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee--cCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR--RGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~--~~~~~v~  257 (444)
                      .+                       ..... ...+..++++++|+..++...++ .|..||. +++.....  .....+.
T Consensus       133 ~~-----------------------~~~~~-~~~~~~i~~~~~g~l~v~~~~~~-~i~~~~~-~g~~~~~~~~~~~~~~~  186 (299)
T 2z2n_A          133 EY-----------------------ELPNK-GSYPSFITLGSDNALWFTENQNN-AIGRITE-SGDITEFKIPTPASGPV  186 (299)
T ss_dssp             EE-----------------------ECSST-TCCEEEEEECTTSCEEEEETTTT-EEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             Ee-----------------------cCCCC-CCCCceEEEcCCCCEEEEeCCCC-EEEEEcC-CCcEEEeeCCCCCCcce
Confidence            11                       01111 25689999999998776655555 8999998 66554432  2345688


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      .++++++|+++++...++.|.+||. +++...+  ..+...+.+++++++|+..+ +......+..++. +         
T Consensus       187 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~-~---------  254 (299)
T 2z2n_A          187 GITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTS-N---------  254 (299)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEET-T---------
T ss_pred             eEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECC-C---------
Confidence            9999999987777666889999999 6665332  33456789999999998554 5444456666653 1         


Q ss_pred             CCCCccccccc--ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          336 LPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       336 ~~~~~~~~~~~--~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                          . .+..+  ..+. .+.++++ ++|++.++.. .      +.|..++.++++
T Consensus       255 ----g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~------~~l~~~~~~~~~  297 (299)
T 2z2n_A          255 ----N-IIEEYPIQIKSAEPHGICF-DGETIWFAME-C------DKIGKLTLIKDN  297 (299)
T ss_dssp             ----T-EEEEEECSSSSCCEEEEEE-CSSCEEEEET-T------TEEEEEEEC---
T ss_pred             ----C-ceEEEeCCCCCCccceEEe-cCCCEEEEec-C------CcEEEEEcCccc
Confidence                1 11111  1222 6889999 8988777654 3      577788877643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=6.8e-12  Score=110.65  Aligned_cols=213  Identities=9%  Similarity=0.045  Sum_probs=144.3

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      .+++|++++.++.|.+||.++ ++....+.......+.++.++|+|+.++  +.++.|+.||.+ ++....         
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~-G~~~W~---------   70 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT-KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD-GRELWN---------   70 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT-TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT-SCEEEE---------
T ss_pred             CCcEEEeeCCCCEEEEEECCC-CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC-CCEEEE---------
Confidence            467889999999999999977 6666655422224688999999976555  557889999973 332222         


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-CCCeEEEEEcCCCCceeeec-------CCCCeEEEEE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-ESSSFTIWDVAQGLGTPIRR-------GFGGLSILKW  261 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~~i~iwd~~~~~~~~~~~-------~~~~v~~~~~  261 (444)
                                      +..+....+.++.+.++|+.+++.+. ++ .|..+|. +++.+....       +......+++
T Consensus        71 ----------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~~-~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~  132 (276)
T 3no2_A           71 ----------------IAAPAGCEMQTARILPDGNALVAWCGHPS-TILEVNM-KGEVLSKTEFETGIERPHAQFRQINK  132 (276)
T ss_dssp             ----------------EECCTTCEEEEEEECTTSCEEEEEESTTE-EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred             ----------------EcCCCCccccccEECCCCCEEEEecCCCC-EEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence                            22222246888999999999998877 55 7887876 454433221       1123455678


Q ss_pred             ecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347          262 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       262 sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      .++|+++++...++.|..||.. ++..........+.++.+.++|+.++++.. +.++..++..             +++
T Consensus       133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~-------------tG~  197 (276)
T 3no2_A          133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD-AHCFVQLNLE-------------SNR  197 (276)
T ss_dssp             CTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT-TSEEEEECTT-------------TCC
T ss_pred             CCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC-CCeEEEEeCc-------------CCc
Confidence            8999999999999999999998 776443333355677888999998876544 3455555432             123


Q ss_pred             ccccccc-----CC--ceeEEEECCCCCEEEEEe
Q 013347          342 DIVSLTG-----SQ--GIEKIAWDASGERLAVSY  368 (444)
Q Consensus       342 ~~~~~~~-----~~--~v~~~~~spdg~~l~~~~  368 (444)
                      .+.++..     ..  .+..+...++|.++++.+
T Consensus       198 ~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          198 IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            3222221     11  478888999999888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.48  E-value=8.8e-12  Score=124.98  Aligned_cols=246  Identities=10%  Similarity=0.085  Sum_probs=155.4

Q ss_pred             ceEEEEEecCCCeEEEEE-----CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCc---------
Q 013347          101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG---------  166 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~---------  166 (444)
                      .+..++|||||++||.+.     ....|++||+.+ ++......  +......++|+ |++.|+.+..+..         
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-g~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-KQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-CSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-CCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            588899999999999754     224799999997 44322211  11113568899 9999998887743         


Q ss_pred             ----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeec-cCCCceEEEEEccCCCeEEEEeeCC---CeEEE
Q 013347          167 ----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRYLASASYES---SSFTI  238 (444)
Q Consensus       167 ----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---~~i~i  238 (444)
                          |++|++.+......                     ++..... + ...+..+.|+|||++|+.....+   +.|++
T Consensus       206 ~~~~v~~~~lgt~~~~~~---------------------~v~~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDR---------------------LVFGAIPAQ-HHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             CCCEEEEEETTSCGGGCE---------------------EEESCSGGG-CCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             CCcEEEEEECCCCcccce---------------------EEEecCCCC-CeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence                88888874432211                     1111122 2 24578899999999987655321   28999


Q ss_pred             EEcCCC--CceeeecCCCCeEEEEEecCCCeEE-EEecC---CcEEEEECCCCce---eccccCCCceeEEEECCCCCEE
Q 013347          239 WDVAQG--LGTPIRRGFGGLSILKWSPTGDYFF-AAKFD---GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMI  309 (444)
Q Consensus       239 wd~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d---~~v~iwd~~~~~~---~~~~~~~~~v~~~~~sp~g~~l  309 (444)
                      +|+.++  +...+..+....... |+++|..|+ ....+   +.|..+|+.++..   ..+..+...+.  .|+++++.|
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l  340 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL  340 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence            999876  445566665555555 667777664 44433   5799999988765   44556665554  899999998


Q ss_pred             EEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEEEEEecC-CCccccceEEEEEcCC
Q 013347          310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKG-GDDIYKGLIAIYDARR  386 (444)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d-~~~~~d~~i~vwd~~~  386 (444)
                      ++....++.- .+.+++.           .......+.  ....+..+.++|+++.|+....+ ...   ++|+.||+.+
T Consensus       341 v~~~~~~g~~-~l~~~d~-----------~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP---~~l~~~d~~~  405 (693)
T 3iuj_A          341 FAEYMVDATA-RVEQFDY-----------EGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQP---PTLYRFEPKS  405 (693)
T ss_dssp             EEEEEETTEE-EEEEECT-----------TSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSC---CEEEEECTTT
T ss_pred             EEEEEECCee-EEEEEEC-----------CCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCC---CEEEEEECCC
Confidence            8776554432 2333321           122222332  22256778888998766655432 111   7899999987


Q ss_pred             CCeE
Q 013347          387 TPLI  390 (444)
Q Consensus       387 ~~~~  390 (444)
                      ++..
T Consensus       406 g~~~  409 (693)
T 3iuj_A          406 GAIS  409 (693)
T ss_dssp             CCEE
T ss_pred             CeEE
Confidence            7643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=1.5e-10  Score=104.93  Aligned_cols=222  Identities=14%  Similarity=0.103  Sum_probs=143.8

Q ss_pred             CeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347          145 DVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  223 (444)
                      -..+..|+|+++.++.+.. ++.|..|+.+... .                         ..+..  ...+.+++|+++|
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-~-------------------------~~~~~--~~~v~~i~~~~dg  101 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGR-K-------------------------TVHAL--PFMGSALAKISDS  101 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-E-------------------------EEEEC--SSCEEEEEEEETT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-E-------------------------EEEEC--CCcceEEEEeCCC
Confidence            3467889998777776664 5889999987321 1                         11111  2578999999999


Q ss_pred             CeEEEEeeCCCeEEEEEcCCCCceeeecCC-----CCeEEEEEecCCCeEEEEec------CCcEEEEECCCCceecccc
Q 013347          224 RYLASASYESSSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSS  292 (444)
Q Consensus       224 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~  292 (444)
                      +++++.  ++ .|.+||..+++...+....     ..+.+++++|+|+++++...      .+.|..++  +++...+..
T Consensus       102 ~l~v~~--~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~  176 (326)
T 2ghs_A          102 KQLIAS--DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA  176 (326)
T ss_dssp             EEEEEE--TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE
T ss_pred             eEEEEE--CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC
Confidence            877654  34 6999999888765543321     35789999999997665442      24566666  455544433


Q ss_pred             CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347          293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~  371 (444)
                      .....+.++|+|+++.++++......++.+++..... +  .+.  .......+.... .+..++++++|++.++...+ 
T Consensus       177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G-l--~~~--~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~-  250 (326)
T 2ghs_A          177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG-L--PTG--KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-  250 (326)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC-C--BSS--CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-
T ss_pred             CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC-C--ccc--CceEEEECCCCCCCCCeeEECCCCCEEEEEeCC-
Confidence            3345789999999998887766667777777531000 0  000  001111222222 56789999999977776555 


Q ss_pred             CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCCC
Q 013347          372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDKF  416 (444)
Q Consensus       372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~~  416 (444)
                           +.|.+|+.. ++.+     ..+..+...+++++|+ +|++.
T Consensus       251 -----~~v~~~d~~-g~~~-----~~i~~~~~~~~~~af~g~d~~~  285 (326)
T 2ghs_A          251 -----GAVDRYDTD-GNHI-----ARYEVPGKQTTCPAFIGPDASR  285 (326)
T ss_dssp             -----TEEEEECTT-CCEE-----EEEECSCSBEEEEEEESTTSCE
T ss_pred             -----CEEEEECCC-CCEE-----EEEECCCCCcEEEEEecCCCCE
Confidence                 789999984 5443     3344555668899998 88764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.42  E-value=5.3e-11  Score=106.86  Aligned_cols=222  Identities=12%  Similarity=0.045  Sum_probs=143.5

Q ss_pred             eEEEEEecCCCe-EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347          102 LQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (444)
Q Consensus       102 v~~~~~sp~g~~-la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~  179 (444)
                      ....+|+|+|+. +++...++.|..|+..  +.. ..+ ..+...+..++++++|+ ++++.. ++.|.+|+.+  +...
T Consensus        47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~--g~~-~~~-~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~--g~~~  119 (305)
T 3dr2_A           47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED--GTV-DVL-LDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD--GQAH  119 (305)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETT--SCE-EEE-EESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEE
T ss_pred             ccCCeEeCCCCEEEEEECCCCEEEEEeCC--CCE-EEE-eCCCCccceeeECCCCC-EEEEECCCCEEEEECCC--CCEE
Confidence            567899999984 5555578899999874  332 233 24556789999999965 555544 5789999875  2222


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEE----Eee-------------CCCeEEEEEcC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLAS----ASY-------------ESSSFTIWDVA  242 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~----~~~-------------d~~~i~iwd~~  242 (444)
                      .+..                     ...+.....+.+++++|+|++.++    +..             .+ .|..||..
T Consensus       120 ~~~~---------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~-~v~~~d~~  177 (305)
T 3dr2_A          120 LLVG---------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH-SVYRLPPD  177 (305)
T ss_dssp             EEEC---------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE-EEEEECSS
T ss_pred             EEEe---------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC-eEEEEcCC
Confidence            1111                     111111245778999999998776    321             23 68888877


Q ss_pred             CCCceeeecCCCCeEEEEEecCCCeEEEEecC------CcEEEEECCCCce---ecc-ccCCCceeEEEECCCCCEEEEE
Q 013347          243 QGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTS---EPW-SSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       243 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~v~iwd~~~~~~---~~~-~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      +++...+. .......++|+||++.|+.+...      +.|++||+..+..   ..+ .........++++++|++.+ +
T Consensus       178 ~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~  255 (305)
T 3dr2_A          178 GSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-S  255 (305)
T ss_dssp             SCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-C
T ss_pred             CCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-e
Confidence            77666555 44567889999999988766654      6899999876432   111 12234467789999999544 4


Q ss_pred             EcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecC
Q 013347          313 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d  370 (444)
                      ..  ..+..++.              +...+..+.....+.+++|+|+++.|..++.+
T Consensus       256 ~~--~gv~~~~~--------------~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          256 SG--TGVCVFDS--------------DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             CS--SEEEEECT--------------TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred             cC--CcEEEECC--------------CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence            32  22333331              23334444434467899999999988888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=2.2e-11  Score=112.83  Aligned_cols=237  Identities=12%  Similarity=-0.007  Sum_probs=147.9

Q ss_pred             EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC------CCCCeEEEEEeeCCCeEEEEec--CC
Q 013347          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC--KG  165 (444)
Q Consensus       104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~--dg  165 (444)
                      .++++|||++|+++.          .++.|.++|..+ .+....+..+      .......+.|+|||++++++..  ++
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~  200 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP  200 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence            899999999998876          367899999988 4444433222      1234567899999988888764  48


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC-CeEEEEeeCCCeEEEEEcCCC
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-RYLASASYESSSFTIWDVAQG  244 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~~i~iwd~~~~  244 (444)
                      .|.+.|+.+.+....+..+                           ..   ....|++ +.+++.+.|| .+.+.++.++
T Consensus       201 ~VsVID~~t~kvv~~I~v~---------------------------g~---~~~~p~g~~~~v~~~~dG-~~~~V~~~~~  249 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVP---------------------------DC---YHIFPASPTVFYMNCRDG-SLARVDFADG  249 (426)
T ss_dssp             EEEEEETTTTEEEEEEECC---------------------------SE---EEEEEEETTEEEEEETTS-SEEEEECCTT
T ss_pred             eEEEEECCCCeEEEEEEcC---------------------------Cc---eeeccCCCcEEEEEcCCC-CEEEEECCCC
Confidence            8999999854443333221                           10   1222322 3333344444 5555555333


Q ss_pred             Cceee----e-cCCCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceeccc----------c---CCCceeEEEECCC
Q 013347          245 LGTPI----R-RGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----------S---TSGFVTGATWDPE  305 (444)
Q Consensus       245 ~~~~~----~-~~~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~----------~---~~~~v~~~~~sp~  305 (444)
                      +....    . ....++ ..+.+.++++.++..+..+.|.+.|..+.......          .   .......++++|+
T Consensus       250 ~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d  329 (426)
T 3c75_H          250 ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ  329 (426)
T ss_dssp             CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred             cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence            32211    0 111111 23567899888877778899999999765431110          0   0112234789999


Q ss_pred             CCEEEEEEcC---------CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEEEEecCCCccc
Q 013347          306 GRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIY  375 (444)
Q Consensus       306 g~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~d~~~~~  375 (444)
                      ++.++++..+         +..+..++..             +.+.+.++........++|+|||+ +++++...+    
T Consensus       330 g~rlyVa~~~~~~gthk~~s~~VsVID~~-------------T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s----  392 (426)
T 3c75_H          330 SDRIYLLVDQRDEWKHKAASRFVVVLNAE-------------TGERINKIELGHEIDSINVSQDAEPLLYALSAGT----  392 (426)
T ss_dssp             GTEEEEEEEECCTTCTTSCEEEEEEEETT-------------TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT----
T ss_pred             CCEEEEEecccccccccCCCCEEEEEECC-------------CCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCC----
Confidence            9988876431         2346666642             344555555433678999999999 888887532    


Q ss_pred             cceEEEEEcCCCCeE
Q 013347          376 KGLIAIYDARRTPLI  390 (444)
Q Consensus       376 d~~i~vwd~~~~~~~  390 (444)
                       +.|.|+|+.+++.+
T Consensus       393 -~~VsVID~~t~kvv  406 (426)
T 3c75_H          393 -QTLHIYDAATGEEL  406 (426)
T ss_dssp             -TEEEEEETTTCCEE
T ss_pred             -CeEEEEECCCCCEE
Confidence             89999999998876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=4.3e-11  Score=105.51  Aligned_cols=210  Identities=10%  Similarity=-0.066  Sum_probs=138.0

Q ss_pred             CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe
Q 013347          156 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS  235 (444)
Q Consensus       156 ~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~  235 (444)
                      +.+++++.++.|++||.++++..                         -.+..+....+.++.++|+|++++  +.++ .
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~-------------------------w~~~~~~~~~~~~~~~~pdG~ilv--s~~~-~   57 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIV-------------------------WEYPLEKGWECNSVAATKAGEILF--SYSK-G   57 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEE-------------------------EEEECCTTCCCCEEEECTTSCEEE--ECBS-E
T ss_pred             cEEEeeCCCCEEEEEECCCCeEE-------------------------EEeCCCccCCCcCeEECCCCCEEE--eCCC-C
Confidence            56666677899999998744322                         223333213688999999999888  3455 8


Q ss_pred             EEEEEcCCCCceeeecC--CCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCce-eccc------cCCCceeEEEECCC
Q 013347          236 FTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTS-EPWS------STSGFVTGATWDPE  305 (444)
Q Consensus       236 i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~-~~~~------~~~~~v~~~~~sp~  305 (444)
                      |..||. +++.+.....  ...+.++.+.++|+++++.+. ++.|..+|.. ++. ..+.      .+......+++.++
T Consensus        58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~  135 (276)
T 3no2_A           58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKK  135 (276)
T ss_dssp             EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred             EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCC
Confidence            999998 6766654443  246888999999999998887 7788888864 443 2221      11224556788999


Q ss_pred             CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          306 GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       306 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      |+++++. ..++.+..++.              .++.+.++.....+.++.+.++|++++++..+      +.|..+|.+
T Consensus       136 G~~lv~~-~~~~~v~~~d~--------------~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~------~~v~~~d~~  194 (276)
T 3no2_A          136 GNYLVPL-FATSEVREIAP--------------NGQLLNSVKLSGTPFSSAFLDNGDCLVACGDA------HCFVQLNLE  194 (276)
T ss_dssp             SCEEEEE-TTTTEEEEECT--------------TSCEEEEEECSSCCCEEEECTTSCEEEECBTT------SEEEEECTT
T ss_pred             CCEEEEe-cCCCEEEEECC--------------CCCEEEEEECCCCccceeEcCCCCEEEEeCCC------CeEEEEeCc
Confidence            9988754 44566665553              33444455444456678889999999887776      789999999


Q ss_pred             CCCeEEEEEeeeeeC-CCCCCcceeeeeCCCC
Q 013347          386 RTPLISLSLIGFIRG-PGDNPKPVAFSFHDKF  416 (444)
Q Consensus       386 ~~~~~~~~~~~~~~~-~~~~i~~v~~spdg~~  416 (444)
                      +++.+.......+.+ .-..+..++..++|++
T Consensus       195 tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          195 SNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             TCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             CCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            888863222111121 1122445556666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.41  E-value=2.5e-11  Score=121.64  Aligned_cols=240  Identities=9%  Similarity=0.031  Sum_probs=148.4

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  215 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  215 (444)
                      +|...+..++|||||++++.+...     ..|++||+.+++....                        .+..   ....
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------------~~~~---~k~~  178 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------------PLKD---VKFS  178 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------------EEEE---EESC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------------ccCC---ceec
Confidence            455678899999998877765432     4799999985432111                        1111   1135


Q ss_pred             EEEEccCCCeEEEEeeCC------------CeEEEEEcCCCCc--eeeecC----CCCeEEEEEecCCCeEEEEec----
Q 013347          216 ALSWGPDGRYLASASYES------------SSFTIWDVAQGLG--TPIRRG----FGGLSILKWSPTGDYFFAAKF----  273 (444)
Q Consensus       216 ~~~~sp~~~~l~~~~~d~------------~~i~iwd~~~~~~--~~~~~~----~~~v~~~~~sp~~~~l~~~~~----  273 (444)
                      .++|+ ||+.|+.++.+.            ..|++|++.+...  ..+...    ......+.|+|||++|+....    
T Consensus       179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  257 (693)
T 3iuj_A          179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS  257 (693)
T ss_dssp             CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS
T ss_pred             cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC
Confidence            67899 999999988773            1499999987654  233332    234778999999998854432    


Q ss_pred             CCcEEEEECCCC--ceeccccCCCceeEEEECCCCCEEEEEEcCC---ceEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347          274 DGTFYLWETNTW--TSEPWSSTSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  348 (444)
Q Consensus       274 d~~v~iwd~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (444)
                      .+.|+++|+.++  +...+..+....... |+++|..+++..+.+   ..+..+++...           .....+.+..
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~-----------~~~~~~~l~~  325 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANP-----------GPAHWRDLIP  325 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSC-----------CGGGCEEEEC
T ss_pred             CcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC-----------CccccEEEec
Confidence            358999999876  345555555555554 677777777665443   34555554211           1111234444


Q ss_pred             CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCCCCCCceEEEEe
Q 013347          349 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCW  426 (444)
Q Consensus       349 ~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~~~~~~l~~~~  426 (444)
                      +. .+.  .|++++++|+....+...   ..|++|++..+...      .+. .....+..+.++++++.     +.+.+
T Consensus       326 ~~~~~~--~~s~~g~~lv~~~~~~g~---~~l~~~d~~g~~~~------~l~~p~~~~~~~~~~~~d~~~-----l~~~~  389 (693)
T 3iuj_A          326 ERQQVL--TVHSGSGYLFAEYMVDAT---ARVEQFDYEGKRVR------EVALPGLGSVSGFNGKHDDPA-----LYFGF  389 (693)
T ss_dssp             CCSSCE--EEEEETTEEEEEEEETTE---EEEEEECTTSCEEE------EECCSSSSEEEECCCCTTCSC-----EEEEE
T ss_pred             CCCCEE--EEEEECCEEEEEEEECCe---eEEEEEECCCCeeE------EeecCCCceEEeeecCCCCCE-----EEEEe
Confidence            54 443  899999998887765211   37899998865432      222 12334556677777654     44444


Q ss_pred             cc----ceeeeeee
Q 013347          427 SS----GFCCTYPL  436 (444)
Q Consensus       427 ~~----g~i~~~~~  436 (444)
                      ++    +.|+.|++
T Consensus       390 ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          390 ENYAQPPTLYRFEP  403 (693)
T ss_dssp             ECSSSCCEEEEECT
T ss_pred             cCCCCCCEEEEEEC
Confidence            44    56666654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.41  E-value=2.9e-10  Score=103.01  Aligned_cols=224  Identities=13%  Similarity=0.044  Sum_probs=138.0

Q ss_pred             eEEEEEecCCCe-EEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~-la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      ..+.+|+|++.. +++...++.|.+|+..+ ++. ..+  .....+.+++|+++|+ ++++. ...|.+||...... ..
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-~~~-~~~--~~~~~v~~i~~~~dg~-l~v~~-~~gl~~~d~~~g~~-~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLAS-GRK-TVH--ALPFMGSALAKISDSK-QLIAS-DDGLFLRDTATGVL-TL  123 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTT-TEE-EEE--ECSSCEEEEEEEETTE-EEEEE-TTEEEEEETTTCCE-EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCC-CcE-EEE--ECCCcceEEEEeCCCe-EEEEE-CCCEEEEECCCCcE-EE
Confidence            457899998554 45555778999999875 322 222  2346799999999954 55554 44588898763321 11


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC----C-CeEEEEEcCCCCceeeecCCCC
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE----S-SSFTIWDVAQGLGTPIRRGFGG  255 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~-~~i~iwd~~~~~~~~~~~~~~~  255 (444)
                      +...                     ........+.+++++|+|+++++...+    + +.|..++  +++...+......
T Consensus       124 ~~~~---------------------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~  180 (326)
T 2ghs_A          124 HAEL---------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISI  180 (326)
T ss_dssp             EECS---------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESS
T ss_pred             EeeC---------------------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcc
Confidence            1100                     001112468899999999976654432    1 1455555  4444444344456


Q ss_pred             eEEEEEecCCCeEEEE-ecCCcEEEEECC--CC-ce---ec---cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          256 LSILKWSPTGDYFFAA-KFDGTFYLWETN--TW-TS---EP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~-~~d~~v~iwd~~--~~-~~---~~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ...++|+|+++.++.+ +.++.|.+||+.  ++ +.   ..   +......+..++++++|.+.++.. ..+.+..++. 
T Consensus       181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d~-  258 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDT-  258 (326)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECT-
T ss_pred             cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEECC-
Confidence            7789999999877544 557899999986  55 32   11   222345678899999998666443 3344554432 


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC-ceeEEEEC-CCCCEEEEEecC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD-ASGERLAVSYKG  370 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s-pdg~~l~~~~~d  370 (444)
                                   +...+..+..+. .+.+++|+ |+++.|++++..
T Consensus       259 -------------~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          259 -------------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -------------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -------------CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence                         223333444444 68999998 898887766554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=2.8e-11  Score=110.60  Aligned_cols=264  Identities=11%  Similarity=0.031  Sum_probs=157.4

Q ss_pred             ceEEEEEecCCCeEEEEE--CCCeEEEEEccCCCCceeE-----EecCCCCCeEEEEEeeCCCeEEEEe-c-----CCcE
Q 013347          101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVG-C-----KGGI  167 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~--~dg~v~iw~~~~~~~~~~~-----~~~~~~~~v~~l~~s~~~~~ll~~~-~-----dg~v  167 (444)
                      .+..++++++|+++++..  .++.++||.+.+ ++....     ....+-..+..+++++++ +|+++. .     ++.|
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeE
Confidence            478899999999988764  234366776653 332210     011345689999999995 555544 2     4789


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe----eCCCeEEEEEcCC
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS----YESSSFTIWDVAQ  243 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~d~~~i~iwd~~~  243 (444)
                      .+||+.+.+....+....                   .. ......+..+++++++..++.+.    .++ .|.+||+.+
T Consensus        96 ~~~d~~tg~~~~~~~~~~-------------------~~-~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~-~i~v~d~~~  154 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPP-------------------PI-TLSNSFVNDLAVDLIHNFVYISDPAPDDKA-ALIRVDLQT  154 (343)
T ss_dssp             EEEETTTTEEEEEEECCT-------------------TT-SCTTCCCCEEEEETTTTEEEEEECCSGGGC-EEEEEETTT
T ss_pred             EEEECCCCeEEEEEECCh-------------------hh-cccccccceEEEecCCCEEEEEcCccCCCC-eEEEEECCC
Confidence            999987433222111100                   00 01124568999998655554443    455 999999988


Q ss_pred             CCceeeecC-CCCe-EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          244 GLGTPIRRG-FGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       244 ~~~~~~~~~-~~~v-~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      ++....... .... ....+.++|..+.+.+.++.++.|.             ..++.++|+|+|+.|+++......++.
T Consensus       155 g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~  221 (343)
T 2qe8_A          155 GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYR  221 (343)
T ss_dssp             CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred             CCEEEEecCCCcccccccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEE
Confidence            876554432 1110 0134555777777777777776553             236789999999999887766566666


Q ss_pred             EEeecCCCCcCCCcCCCCccccccc--ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeee
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI  398 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~  398 (444)
                      +.......   ..+.  .......+  .++. ....++++++|.++++...+      +.|.+||.++++...     ..
T Consensus       222 ~~~~~~~~---~~~~--~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~------~~V~~~d~~~G~~~~-----~~  285 (343)
T 2qe8_A          222 IKSADLSN---LQLT--DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH------SAIGVITSADRAYKL-----LV  285 (343)
T ss_dssp             EEHHHHTC---TTCC--HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG------TEEEEEETTTTEEEE-----EE
T ss_pred             EEHHHhcC---CCCC--hhhhhcceEecccCCCCceEEECCCCCEEEEccCC------CeEEEEECCCCCEEE-----EE
Confidence            65421100   0000  00001111  1222 45679999999988887766      899999995554321     11


Q ss_pred             eC-CCCCCcceeeeeCCCC
Q 013347          399 RG-PGDNPKPVAFSFHDKF  416 (444)
Q Consensus       399 ~~-~~~~i~~v~~spdg~~  416 (444)
                      .. +...+.+++|.++|++
T Consensus       286 ~~~~~~~p~~va~~~~g~l  304 (343)
T 2qe8_A          286 TDEKLSWTDSFNFGSDGYL  304 (343)
T ss_dssp             ECGGGSCEEEEEECTTSCE
T ss_pred             ECCceecCCeeEECCCCcE
Confidence            11 2445788999988764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=3.7e-10  Score=101.27  Aligned_cols=229  Identities=12%  Similarity=0.135  Sum_probs=144.4

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      ..........|+|+++.|+.++. ++.|..|+.. . ...                         .+..+ ...+..+++
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-~~~-------------------------~~~~~-~~~~~gl~~   93 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-TVD-------------------------VLLDA-TAFTNGNAV   93 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-CEE-------------------------EEEES-CSCEEEEEE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-CEE-------------------------EEeCC-CCccceeeE
Confidence            34456778999999886666655 5889999864 2 111                         11222 256899999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEecCCCeEEE----Eec-------------CCcE
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSPTGDYFFA----AKF-------------DGTF  277 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~----~~~-------------d~~v  277 (444)
                      +++|+++++...++ .|.+|+.. ++...+...     ...+..++++|+|+++++    |..             .+.|
T Consensus        94 d~dG~l~v~~~~~~-~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v  171 (305)
T 3dr2_A           94 DAQQRLVHCEHGRR-AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV  171 (305)
T ss_dssp             CTTSCEEEEETTTT-EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred             CCCCCEEEEECCCC-EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence            99999666554455 89999986 544433321     134678999999998876    332             2568


Q ss_pred             EEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC-----ceEEEEEeecCCCCcCCCcCCCCcccccccccCCce
Q 013347          278 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  352 (444)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  352 (444)
                      ..||..+++...+. .....+.++|+|+++.|+++....     ..++.+++....      +.  ........ .....
T Consensus       172 ~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~------l~--~~~~~~~~-~~~~p  241 (305)
T 3dr2_A          172 YRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA------LH--DRRHFASV-PDGLP  241 (305)
T ss_dssp             EEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE------EE--EEEEEECC-SSSCC
T ss_pred             EEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC------cc--CCeEEEEC-CCCCC
Confidence            88888777765444 445678999999999888765542     566666653210      00  00000011 11145


Q ss_pred             eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccc
Q 013347          353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  429 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g  429 (444)
                      ..++++++|++.++. .       +.|.+|+.+ ++.+     ..+..+. .+.+++|+++++.     |-++.++|
T Consensus       242 dgi~~d~~G~lwv~~-~-------~gv~~~~~~-g~~~-----~~~~~~~-~~~~~~f~~d~~~-----L~it~~~~  298 (305)
T 3dr2_A          242 DGFCVDRGGWLWSSS-G-------TGVCVFDSD-GQLL-----GHIPTPG-TASNCTFDQAQQR-----LFITGGPC  298 (305)
T ss_dssp             CSEEECTTSCEEECC-S-------SEEEEECTT-SCEE-----EEEECSS-CCCEEEECTTSCE-----EEEEETTE
T ss_pred             CeEEECCCCCEEEec-C-------CcEEEECCC-CCEE-----EEEECCC-ceeEEEEeCCCCE-----EEEEcCCe
Confidence            678999999955443 3       459999985 4433     2334333 5889999988764     55665544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.37  E-value=3.8e-11  Score=113.86  Aligned_cols=235  Identities=12%  Similarity=0.071  Sum_probs=150.8

Q ss_pred             EEEee-----CCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE-c-
Q 013347          149 LEWRP-----NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-G-  220 (444)
Q Consensus       149 l~~s~-----~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-  220 (444)
                      ...|.     ||+++++...+ +.|.+.|+++.+...                         .+.-.....+..+++ + 
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~-------------------------ii~ip~g~~phg~~~~~~  144 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDA-------------------------ILEIPNAKGIHGLRPQKW  144 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE-------------------------EEECSSCCSEEEEEECCS
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEee-------------------------EEeCCCCCCCcceeeeec
Confidence            55555     87777776664 779999998443322                         111111245788887 5 


Q ss_pred             cCCCeEEEEe------------------eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC-------
Q 013347          221 PDGRYLASAS------------------YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-------  275 (444)
Q Consensus       221 p~~~~l~~~~------------------~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-------  275 (444)
                      |+++++++++                  .++ .+.+.|..+.+......-.+....++++|+|+++++++.+.       
T Consensus       145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~-~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~  223 (595)
T 1fwx_A          145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVN-VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLP  223 (595)
T ss_dssp             SBCSEEEEEECSCEESSCSSSSTTCGGGEEE-EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             CCCcEEEEecccccccCCCCcccccccccCc-eEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchh
Confidence            8999988884                  233 79999999876665443333567788999999998877542       


Q ss_pred             -------------------------------cEEEEECCC--Cce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          276 -------------------------------TFYLWETNT--WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       276 -------------------------------~v~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                                                     .|.+.|.++  ++. .....-.....++.++|||++++++...+.++..
T Consensus       224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsV  303 (595)
T 1fwx_A          224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTV  303 (595)
T ss_dssp             HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred             hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEE
Confidence                                           467777776  333 2222223456789999999999999888889999


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC----------CCeEE
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----------TPLIS  391 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~----------~~~~~  391 (444)
                      +++......+++.+.. ....+..+.-......++|+|+| ++.+...-     |++|.+||+..          .+.+.
T Consensus       304 id~~~~~~~~~~~l~~-~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~  376 (595)
T 1fwx_A          304 LDVTRFDAVFYENADP-RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKD  376 (595)
T ss_dssp             EEGGGHHHHHHSCCCG-GGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEE
T ss_pred             EECcccccccccccCc-ccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEE
Confidence            9875321001111110 11122233333367899999999 66665543     38999999986          45554


Q ss_pred             EEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          392 LSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       392 ~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ......-.||...-....++|||+|
T Consensus       377 kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          377 KLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             EEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             EeecccccccceeccceEeCCCCCE
Confidence            4343333355444467788999998

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.37  E-value=1.7e-09  Score=99.09  Aligned_cols=236  Identities=11%  Similarity=0.075  Sum_probs=143.9

Q ss_pred             EEe--eCCCeEEEEec-CCcEEEEecCCC-CCcceeeccccccccccccCCCCceEEEEEee------ccCCCceEEEEE
Q 013347          150 EWR--PNGGRSLSVGC-KGGICIWAPSYP-GNAASVRSGAASFLGALSRGPGTRWTLVDFLR------SQNGEQITALSW  219 (444)
Q Consensus       150 ~~s--~~~~~ll~~~~-dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~  219 (444)
                      .++  ++.++|++.+. ++.|.++|+.+. ..+.                      +.++++      .........+..
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~----------------------~~k~ie~~~~~~~~g~s~Ph~~~~  145 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPK----------------------IIKVIEPEEVKKVSGYSRLHTVHC  145 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCE----------------------EEEEECHHHHHHHHCEEEEEEEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCce----------------------eeeeechhhcccccCCCcccceeE
Confidence            336  78777777666 599999998633 2222                      222221      011124567888


Q ss_pred             ccCCCeEEEEeeC------CCeEEEEEcCCCCceeeecCC----CCeEEEEEecCCCeEEEEe-----------------
Q 013347          220 GPDGRYLASASYE------SSSFTIWDVAQGLGTPIRRGF----GGLSILKWSPTGDYFFAAK-----------------  272 (444)
Q Consensus       220 sp~~~~l~~~~~d------~~~i~iwd~~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-----------------  272 (444)
                      +|+| .++++..+      + .|.++|.++.+.+......    .--..+-|+|+++.+++..                 
T Consensus       146 ~pdG-i~Vs~~g~~~g~~~g-~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~  223 (462)
T 2ece_A          146 GPDA-IYISALGNEEGEGPG-GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK  223 (462)
T ss_dssp             CSSC-EEEEEEEETTSCSCC-EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred             CCCe-EEEEcCCCcCCCCCC-eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence            8999 66655544      4 8999999988876544321    2234588899999888774                 


Q ss_pred             --cCCcEEEEECCCCceec-ccc--CCCceeEEEE--CCCCCEEEEEEc-----CCceEEEEEeecCCCCcCCCcCCCCc
Q 013347          273 --FDGTFYLWETNTWTSEP-WSS--TSGFVTGATW--DPEGRMILLAFA-----GSLTLGSIHFASKPPSLDAHLLPVDL  340 (444)
Q Consensus       273 --~d~~v~iwd~~~~~~~~-~~~--~~~~v~~~~~--sp~g~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                        .+.+|.+||+.+++... +..  .......+.|  +|+++++++++.     .++.+..+............+.....
T Consensus       224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~  303 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE  303 (462)
T ss_dssp             HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred             hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence              36899999999876632 222  1233455655  999999998887     77777766653210000000000000


Q ss_pred             c---cc----ccccc-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCC-----------
Q 013347          341 P---DI----VSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-----------  401 (444)
Q Consensus       341 ~---~~----~~~~~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----------  401 (444)
                      +   .+    ..+.+ ......+.+||||++|.++....     +.|.+||+.....  ...+..+...           
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-----d~VavfdV~d~~~--~~lv~~I~tGG~~~~~~~~~G  376 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-----GEVRQYDISNPFK--PVLTGKVKLGGIFHRADHPAG  376 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-----TEEEEEECSSTTS--CEEEEEEECBTTTTCBCCTTS
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC--cEEEEEEEeCCeecccccccc
Confidence            0   00    01111 22578899999999999998874     8999999863211  1112223211           


Q ss_pred             ---CCCCcceeeeeCCCC
Q 013347          402 ---GDNPKPVAFSFHDKF  416 (444)
Q Consensus       402 ---~~~i~~v~~spdg~~  416 (444)
                         ......+++||||++
T Consensus       377 ~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          377 HKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             CCCCSCCCCEEECTTSSE
T ss_pred             ccCCCCCCEEEEcCCCCE
Confidence               114689999999997

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.36  E-value=4.6e-09  Score=92.16  Aligned_cols=253  Identities=8%  Similarity=-0.025  Sum_probs=157.2

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCce---eEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeecccc
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDA---CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA  186 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~---~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~  186 (444)
                      |++|..+. .+.|+.++++......   ..........+..++|+++++.++.+.. .+.|..++.+.... ..+     
T Consensus         1 ~~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~-----   73 (267)
T 1npe_A            1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI-----   73 (267)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE-----
T ss_pred             CcEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE-----
Confidence            34565554 3578888887532110   1111111245789999998777777665 58899999863221 111     


Q ss_pred             ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEEEecCC
Q 013347          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTG  265 (444)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~  265 (444)
                                         +... ......+++++++..|+.+....+.|.++++.......+.... .....++++|++
T Consensus        74 -------------------~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~  133 (267)
T 1npe_A           74 -------------------IRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (267)
T ss_dssp             -------------------ECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             -------------------EECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence                               1111 1467899999987777666654449999998765444443322 567899999976


Q ss_pred             CeEEEEec---CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347          266 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       266 ~~l~~~~~---d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      ..|+.+..   .+.|..+++.......+. ........++++|++..|+++......+..++....             .
T Consensus       134 g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-------------~  200 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-------------G  200 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-------------E
T ss_pred             CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-------------c
Confidence            66654443   368888888754433322 233467899999999888888877777877775211             1


Q ss_pred             cccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCC
Q 013347          342 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDK  415 (444)
Q Consensus       342 ~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~  415 (444)
                      ....+.+......++.  ++..|..+...+     +.|.++|..+++..     ..+. +....+..+++.|+++
T Consensus       201 ~~~~~~~~~~P~gi~~--d~~~lyva~~~~-----~~v~~~d~~~g~~~-----~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          201 RRKVLEGLQYPFAVTS--YGKNLYYTDWKT-----NSVIAMDLAISKEM-----DTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEECCCSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTTEEE-----EEECCSSCCCCCCEEEECSCC
T ss_pred             eEEEecCCCCceEEEE--eCCEEEEEECCC-----CeEEEEeCCCCCce-----EEEccccccccceeeecCccC
Confidence            1111122223456665  456677666543     79999999987765     2333 2233578999999876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.34  E-value=1.9e-09  Score=96.10  Aligned_cols=235  Identities=11%  Similarity=0.049  Sum_probs=150.7

Q ss_pred             CCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc
Q 013347          142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (444)
Q Consensus       142 ~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (444)
                      ....+.++++.++|..+++...++.|.+|+.. . ....+.                       +... ...+.++++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~~~-----------------------~~~~-~~~~~~i~~~~   71 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKEFE-----------------------VPTP-DAKVMCLIVSS   71 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEEEE-----------------------CSST-TCCEEEEEECT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEEEE-----------------------CCCC-CCcceeEEECC
Confidence            34578899999996655554457999999876 2 211111                       1111 25789999999


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec--cccCCCce
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFV  297 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v  297 (444)
                      +|+.+++...++ .|..||.. ++......  ....+..++++++++++++...++.|..||.. ++...  +......+
T Consensus        72 ~g~l~v~~~~~~-~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~  148 (300)
T 2qc5_A           72 LGDIWFTENGAN-KIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP  148 (300)
T ss_dssp             TSCEEEEETTTT-EEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred             CCCEEEEecCCC-eEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence            998776655565 89999987 54443322  24678999999999887777768899999988 55533  22345678


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      .+++++++|++.+ +......+..++. +.           .... ....... .+..++++++|++.++....      
T Consensus       149 ~~i~~d~~g~l~v-~~~~~~~i~~~~~-~g-----------~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~------  208 (300)
T 2qc5_A          149 AFITLGSDNALWF-TENQNNSIGRITN-TG-----------KLEE-YPLPTNAAAPVGITSGNDGALWFVEIMG------  208 (300)
T ss_dssp             EEEEECTTSSEEE-EETTTTEEEEECT-TC-----------CEEE-EECSSTTCCEEEEEECTTSSEEEEETTT------
T ss_pred             eeEEECCCCCEEE-EecCCCeEEEECC-CC-----------cEEE-eeCCCCCCCcceEEECCCCCEEEEccCC------
Confidence            9999999998544 5444455555543 10           0000 0111122 67899999999877665544      


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          377 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +.|.+|+. +++....    .+..+...+.+++++++|++     ....+.++.|..|+
T Consensus       209 ~~i~~~~~-~g~~~~~----~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~  257 (300)
T 2qc5_A          209 NKIGRITT-TGEISEY----DIPTPNARPHAITAGKNSEI-----WFTEWGANQIGRIT  257 (300)
T ss_dssp             TEEEEECT-TCCEEEE----ECSSTTCCEEEEEECSTTCE-----EEEETTTTEEEEEC
T ss_pred             CEEEEEcC-CCcEEEE----ECCCCCCCceEEEECCCCCE-----EEeccCCCeEEEEC
Confidence            78999998 4444321    12234556788999998874     22333345555554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=7.6e-10  Score=98.85  Aligned_cols=199  Identities=10%  Similarity=0.064  Sum_probs=124.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS  291 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~  291 (444)
                      .-..+..|++++..|+.....++.|..||..+++.. .......+.+++++++|+++++ . ++.|.+||..+++...+.
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            456789999966655555443349999999887653 3345678999999999995554 3 568999999988764433


Q ss_pred             c-----CCCceeEEEECCCCCEEEEEEcCC--------ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEEC
Q 013347          292 S-----TSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD  358 (444)
Q Consensus       292 ~-----~~~~v~~~~~sp~g~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  358 (444)
                      .     ....++.++++|+|++.++.....        .....+++..            ................++|+
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~------------~g~~~~~~~~~~~pngi~~s  157 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP------------DHHVKKYFDQVDISNGLDWS  157 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT------------TSCEEEEEEEESBEEEEEEC
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC------------CCCEEEEeeccccccceEEc
Confidence            2     124578999999999766543221        1123333321            11111111112256789999


Q ss_pred             CCCCEEEEEecCCCccccceEEEEEc--CCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          359 ASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       359 pdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ||++.|+.+....     +.|.+|++  .++.+........+..+...+..+++.++|++     ....+..++|..|+
T Consensus       158 pdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d  226 (297)
T 3g4e_A          158 LDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLD  226 (297)
T ss_dssp             TTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEEC
T ss_pred             CCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEc
Confidence            9999887665432     88999997  45654322222223333345678888888865     44455566666554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.32  E-value=4.6e-10  Score=102.88  Aligned_cols=229  Identities=11%  Similarity=0.090  Sum_probs=143.0

Q ss_pred             EEe--cCCCeEEEEE-CCCeEEEEEccCCCCceeEEe-c-------C-CCCCeEEEEEeeCCCeEEEEecC------CcE
Q 013347          106 SWH--QHKHIVAFIS-GSTQVIVRDYEDSGKDACILT-S-------D-SQRDVKVLEWRPNGGRSLSVGCK------GGI  167 (444)
Q Consensus       106 ~~s--p~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~-~-------~-~~~~v~~l~~s~~~~~ll~~~~d------g~v  167 (444)
                      .++  +++++|+..+ .++.|.|+|+.+......+.. .       . .......+..+|+| .++++..+      +.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  8888887655 788999999975422222211 1       0 11244567788996 65655554      789


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-----------------
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-----------------  230 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-----------------  230 (444)
                      .++|.++.+.......+                       ......-..+.|+|+++.++++.                 
T Consensus       167 ~vlD~~T~~v~~~~~~~-----------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~  223 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEID-----------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK  223 (462)
T ss_dssp             EEECTTTCCEEEECCSB-----------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred             EEEECCCCeEEEEEccC-----------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence            99998754433332211                       11112345688899999888875                 


Q ss_pred             -eCCCeEEEEEcCCCCceeeecCC---CCeEEEEE--ecCCCeEEEEe------cCCcEEEEECCCCceec-----ccc-
Q 013347          231 -YESSSFTIWDVAQGLGTPIRRGF---GGLSILKW--SPTGDYFFAAK------FDGTFYLWETNTWTSEP-----WSS-  292 (444)
Q Consensus       231 -~d~~~i~iwd~~~~~~~~~~~~~---~~v~~~~~--sp~~~~l~~~~------~d~~v~iwd~~~~~~~~-----~~~-  292 (444)
                       ..+.+|.+||+.+++........   .....+.|  +|+++++++++      .+++|.+|..+.++...     +.. 
T Consensus       224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~  303 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE  303 (462)
T ss_dssp             HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred             hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence             12349999999987555433332   23455656  99999987666      45688776554433210     000 


Q ss_pred             ---------------CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc---------
Q 013347          293 ---------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG---------  348 (444)
Q Consensus       293 ---------------~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  348 (444)
                                     .......+.+||||++|+++....+.+..+++.+..          ....+..+.-         
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~----------~~~lv~~I~tGG~~~~~~~  373 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF----------KPVLTGKVKLGGIFHRADH  373 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT----------SCEEEEEEECBTTTTCBCC
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC----------CcEEEEEEEeCCeeccccc
Confidence                           024578899999999999999888888888874321          1111111111         


Q ss_pred             ---C---CceeEEEECCCCCEEEEEe
Q 013347          349 ---S---QGIEKIAWDASGERLAVSY  368 (444)
Q Consensus       349 ---~---~~v~~~~~spdg~~l~~~~  368 (444)
                         .   ..-..++++|||++|+++.
T Consensus       374 ~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          374 PAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccCCCCCCEEEEcCCCCEEEEEc
Confidence               1   1357899999999999988

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=1.9e-10  Score=105.19  Aligned_cols=201  Identities=8%  Similarity=-0.010  Sum_probs=126.7

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      ++..+++++..+.+++++.+ .+++|+++.......-...              ..... ....+. . |+.++|  |++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~--------------~~~~~-~~~~lp-~-V~~l~f--d~~   98 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDST--------------PLTFK-WEKEIP-D-VIFVCF--HGD   98 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSC--------------CCCCS-EEEECT-T-EEEEEE--ETT
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccc--------------cccce-EEeeCC-C-eeEEEE--CCC
Confidence            68899999996666666665 6667987621100000000              00000 011232 5 999999  999


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEEC
Q 013347          225 YLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWD  303 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s  303 (444)
                      +|+++ .++ .|++||+.+..... ...+...+.++.+.+.  .++++..||.|.+||+.++....   +...|++++||
T Consensus        99 ~L~v~-~~~-~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WS  171 (388)
T 1xip_A           99 QVLVS-TRN-ALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVT  171 (388)
T ss_dssp             EEEEE-ESS-EEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEEC
T ss_pred             EEEEE-cCC-cEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEc
Confidence            99998 776 99999998765433 5566777888877654  38888999999999999877643   34689999999


Q ss_pred             CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc------c---cCC-ceeEEEECCCCCEEEEEecCCC-
Q 013347          304 PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL------T---GSQ-GIEKIAWDASGERLAVSYKGGD-  372 (444)
Q Consensus       304 p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~-~v~~~~~spdg~~l~~~~~d~~-  372 (444)
                      |+|  ++++.. ++.+..+......           ....+++      .   +|. .|.++.|.++++++++=..... 
T Consensus       172 pkG--~~vg~~-dg~i~~~~~~~~~-----------~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~  237 (388)
T 1xip_A          172 NSQ--LAVLLK-DRSFQSFAWRNGE-----------MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISE  237 (388)
T ss_dssp             SSE--EEEEET-TSCEEEEEEETTE-----------EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCS
T ss_pred             CCc--eEEEEc-CCcEEEEcCCCcc-----------ccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCC
Confidence            999  343433 3556666542210           0001122      2   245 8999999999999886443221 


Q ss_pred             cc----ccceEEEEEcCC
Q 013347          373 DI----YKGLIAIYDARR  386 (444)
Q Consensus       373 ~~----~d~~i~vwd~~~  386 (444)
                      +.    ++..++|...+.
T Consensus       238 ~~~~~~~~~~~~ii~~~~  255 (388)
T 1xip_A          238 TDDEVSYDQKMYIIKHID  255 (388)
T ss_dssp             SCSSCCCCEEEEEEEEET
T ss_pred             cCcccCCcceEEEEEcCC
Confidence            11    134567766433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=2.3e-10  Score=104.26  Aligned_cols=269  Identities=8%  Similarity=-0.058  Sum_probs=152.9

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEEEecCCCCCcceeeccccccccc
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|.++|..+ .+....+..+.. +  .+.++||+++++++.          .++.|.+||..+.+....+..+..     
T Consensus        47 ~vsvID~~t-~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-----  117 (368)
T 1mda_H           47 ENWVSCAGC-GVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-----  117 (368)
T ss_dssp             EEEEEETTT-TEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS-----
T ss_pred             eEEEEECCC-CeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc-----
Confidence            888999988 555555544543 4  799999998888886          258899999986555444332100     


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEE--EEcCCCCceeeecCCCCeEEEEEecCCC-e
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTI--WDVAQGLGTPIRRGFGGLSILKWSPTGD-Y  267 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~i--wd~~~~~~~~~~~~~~~v~~~~~sp~~~-~  267 (444)
                                    -+.........++++|||++++++... +..+.+  +|+.+  ...+ ...+.   ..+.|+++ .
T Consensus       118 --------------~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~~---~~~~p~g~~~  177 (368)
T 1mda_H          118 --------------PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSASC---FHIHPGAAAT  177 (368)
T ss_dssp             --------------CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSSC---CCCEEEETTE
T ss_pred             --------------cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCCc---eEEccCCCeE
Confidence                          000001245679999999999998753 337888  99877  2222 21121   12345543 3


Q ss_pred             EEEEecCCcEEEEECCC-----Cceec-----cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          268 FFAAKFDGTFYLWETNT-----WTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       268 l~~~~~d~~v~iwd~~~-----~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +++.+.|+++.+.|+.+     ++...     +.....+.   . .+++..++....  +.+..++........... +.
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~-~~  250 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAA-ID  250 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS--SCCEEEECCSSCCEEECC-CC
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC--CEEEEEECCCCcceEEEE-EE
Confidence            45666788888888876     33321     11112222   3 555555554433  567777753211000000 00


Q ss_pred             CCcccccccccCC--ceeEEEECCCCCEEEEEec-C-CCc-cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          338 VDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYK-G-GDD-IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       338 ~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-d-~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      .... .....+..  ....++++||++.++++.. . +.. ..++.+.++|+.+++.+...+..      ..+..++|+|
T Consensus       251 ~~~~-~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg------~~p~gi~~s~  323 (368)
T 1mda_H          251 GNES-GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG------HDSDAIIAAQ  323 (368)
T ss_dssp             SSCT-HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE------EEECEEEECC
T ss_pred             eccc-cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC------CCcceEEECC
Confidence            0000 00000000  1223789999998887643 1 100 00034569999998876332221      1467999999


Q ss_pred             CCCCCCCceEEEEe-ccceeeeeeee
Q 013347          413 HDKFKQGPLLSVCW-SSGFCCTYPLI  437 (444)
Q Consensus       413 dg~~~~~~~l~~~~-~~g~i~~~~~~  437 (444)
                      ||++    ++..+. .++.|.++++.
T Consensus       324 Dg~~----l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          324 DGAS----DNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             SSSC----EEEEEETTTTEEEEEESS
T ss_pred             CCCE----EEEEccCCCCeEEEEECC
Confidence            9986    355555 58999988864

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.26  E-value=1.1e-09  Score=103.94  Aligned_cols=274  Identities=12%  Similarity=0.020  Sum_probs=159.6

Q ss_pred             EEEec-----CCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEE-e-eCCCeEEEEec-------------
Q 013347          105 VSWHQ-----HKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-R-PNGGRSLSVGC-------------  163 (444)
Q Consensus       105 ~~~sp-----~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~-s-~~~~~ll~~~~-------------  163 (444)
                      .+.|.     ||+++.... .++.|.+.|+.+ .+...++.......+..+++ + |+++++++++.             
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t-~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCC-ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence            45555     888888766 456799999997 45444444444556889998 5 89888888751             


Q ss_pred             -----CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCC-----------CceEEE------EEcc
Q 013347          164 -----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG-----------EQITAL------SWGP  221 (444)
Q Consensus       164 -----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~v~~~------~~sp  221 (444)
                           ++.+.+.|.++.+...++..+.  ....+..+.+++|...........           ..|.-+      .+.+
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             cccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence                 2578888887554444444332  122233333444444433322110           000000      1123


Q ss_pred             CCCeEEEEeeCCCeEEEEEcCC--CCc-eeeecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCc-----------
Q 013347          222 DGRYLASASYESSSFTIWDVAQ--GLG-TPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWT-----------  286 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~--~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~-----------  286 (444)
                      +|++...    + .|.+.|..+  ++. .....-.....++.++|||+++++++ .+.+|.++|+.+.+           
T Consensus       247 ~Gk~~~i----~-~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          247 AGDYQEL----N-GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HTCSEEE----T-TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             CCCeeEE----C-cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence            3433322    2 478888877  433 33333345667899999999886554 57899999998653           


Q ss_pred             -eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCce------eEEEECC
Q 013347          287 -SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI------EKIAWDA  359 (444)
Q Consensus       287 -~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------~~~~~sp  359 (444)
                       ......-......++|+|+| +++++..-++.+..|++......+.+.   ...+.+.++.-|-..      ..+.++|
T Consensus       322 ~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~---~~~~vi~kidV~yqpGh~~~~~g~t~~~  397 (595)
T 1fwx_A          322 AVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE---KVDPIKDKLDVHYQPGHLKTVMGETLDA  397 (595)
T ss_dssp             GEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC---SCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             ceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc---ccceeEEEeecccccccceeccceEeCC
Confidence             11122334567899999999 788888888888888864310000000   012233334333211      2345689


Q ss_pred             CCCEEEEEecCCCccc-------cceEEEEEcCCCCeE
Q 013347          360 SGERLAVSYKGGDDIY-------KGLIAIYDARRTPLI  390 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~-------d~~i~vwd~~~~~~~  390 (444)
                      ||++|+++...+-+++       -..-.++|+..+++.
T Consensus       398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence            9999999987643211       112389999776644

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.24  E-value=1.8e-10  Score=105.02  Aligned_cols=244  Identities=10%  Similarity=-0.032  Sum_probs=146.2

Q ss_pred             EEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC-C-----CCCeEEEEEeeCCCeEEEEec--CC
Q 013347          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD-S-----QRDVKVLEWRPNGGRSLSVGC--KG  165 (444)
Q Consensus       104 ~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~-~-----~~~v~~l~~s~~~~~ll~~~~--dg  165 (444)
                      .++++|||++++++.          .++.|.+||..+ .+....+..+ .     ......++++|||++++++..  ..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~  147 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence            799999999999886          368899999998 4544444322 0     134567999999988888864  36


Q ss_pred             cEEE--EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEEeeCCCeEEEEEcC
Q 013347          166 GICI--WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVA  242 (444)
Q Consensus       166 ~v~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~  242 (444)
                      .+.+  +|..+   ...+..+                           ..   +.+.|+++. +++.+.|+ .+.+.|+.
T Consensus       148 ~v~V~~iD~~t---v~~i~v~---------------------------~~---~~~~p~g~~~~~~~~~dg-~~~~vd~~  193 (368)
T 1mda_H          148 AAGLSVPGASD---DQLTKSA---------------------------SC---FHIHPGAAATHYLGSCPA-SLAASDLA  193 (368)
T ss_dssp             EEEEEETTTEE---EEEEECS---------------------------SC---CCCEEEETTEEECCCCTT-SCEEEECC
T ss_pred             eEEEEEEchhh---ceEEECC---------------------------Cc---eEEccCCCeEEEEEcCCC-CEEEEECc
Confidence            7888  88863   1111111                           11   112344433 33344555 66667776


Q ss_pred             C-----CCcee-----eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce---eccc-------cCC---CceeE
Q 013347          243 Q-----GLGTP-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS-------STS---GFVTG  299 (444)
Q Consensus       243 ~-----~~~~~-----~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~---~~~~-------~~~---~~v~~  299 (444)
                      +     ++...     +.....+.   + .+++..++..+. +.|.+.|..+...   ..+.       .+.   .....
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~  268 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM  268 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred             cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence            5     22211     11122333   3 667777666666 8999999976432   1111       011   11222


Q ss_pred             EEECCCCCEEEEEEc---C-----CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec--
Q 013347          300 ATWDPEGRMILLAFA---G-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK--  369 (444)
Q Consensus       300 ~~~sp~g~~l~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--  369 (444)
                      ++++|+++.++++..   .     ......++..             +.+.+..+........++|+|||++++++..  
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~-------------t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~  335 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS-------------VGQTSGPISNGHDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS-------------SCCEEECCEEEEEECEEEECCSSSCEEEEEETT
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECC-------------CCeEEEEEECCCCcceEEECCCCCEEEEEccCC
Confidence            789999999887654   2     2233455532             3344555554446889999999985544443  


Q ss_pred             CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      +      +.|.++|+.+++.+     ..+.. ......+++.+
T Consensus       336 ~------~~VsVID~~t~kvv-----~~I~v-g~~P~~i~~~~  366 (368)
T 1mda_H          336 T------EVLDIYDAASDQDQ-----SSVEL-DKGPESLSVQN  366 (368)
T ss_dssp             T------TEEEEEESSSCEEE-----EECCC-CSCCCEEECCC
T ss_pred             C------CeEEEEECCCCcEE-----EEEEC-CCCCCEEEeec
Confidence            4      89999999998776     34442 23445666543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.06  E-value=5.5e-07  Score=78.77  Aligned_cols=219  Identities=7%  Similarity=-0.024  Sum_probs=136.3

Q ss_pred             ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      .+..++|++++..|..+. .++.|.+++.+. ....... .........++++++++.++.+.. .+.|.+++++... .
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~  113 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-R  113 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-E
Confidence            367899999776666555 578999999875 3322222 222356789999998777776655 4889998886221 1


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC--CCeEEEEEcCCCCceeee-cCCCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE--SSSFTIWDVAQGLGTPIR-RGFGG  255 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~~i~iwd~~~~~~~~~~-~~~~~  255 (444)
                      ..+                        .... ......++++|++..|+.+...  .+.|..+++.......+. .....
T Consensus       114 ~~~------------------------~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~  168 (267)
T 1npe_A          114 RVL------------------------FDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (267)
T ss_dssp             EEE------------------------ECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             EEE------------------------EECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCC
Confidence            111                        1111 1467899999976666665543  238888888654433332 22356


Q ss_pred             eEEEEEecCCCeEE-EEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCC
Q 013347          256 LSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  334 (444)
Q Consensus       256 v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ...++++|+++.|+ +-...+.|.++|..+.....+.........++.  ++..++++......+..++..         
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~---------  237 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLA---------  237 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETT---------
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCC---------
Confidence            78999999877764 445567999999986554333322334456665  456777777666677666632         


Q ss_pred             cCCCCcccccccccCC--ceeEEEECCCCC
Q 013347          335 LLPVDLPDIVSLTGSQ--GIEKIAWDASGE  362 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~--~v~~~~~spdg~  362 (444)
                          +...+..+....  ....+++.|++.
T Consensus       238 ----~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          238 ----ISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ----TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             ----CCCceEEEccccccccceeeecCccC
Confidence                223333433222  356777777764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.04  E-value=9.9e-08  Score=82.21  Aligned_cols=193  Identities=16%  Similarity=0.067  Sum_probs=128.1

Q ss_pred             eEEEEEecCCCeEEEEEC--CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      ...++|++|+.+.++.+.  ++.|+++|+.+ ++....+..+.......+++.  +++++.+.. ++.+.++|..+.+. 
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v-   98 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN-   98 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE-
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE-
Confidence            468999999755554432  68999999998 555544432222223344554  456666655 59999999884332 


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC---C--
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---F--  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~--  253 (444)
                                              +..+......   ...+++||+.++.+..++ .|.++|..+.+......-   .  
T Consensus        99 ------------------------~~~i~~g~~~---g~glt~Dg~~l~vs~gs~-~l~viD~~t~~v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           99 ------------------------IKNFTHQMKD---GWGLATDGKILYGSDGTS-ILYEIDPHTFKLIKKHNVKYNGHR  150 (266)
T ss_dssp             ------------------------EEEEECCSSS---CCEEEECSSSEEEECSSS-EEEEECTTTCCEEEEEECEETTEE
T ss_pred             ------------------------EEEEECCCCC---eEEEEECCCEEEEECCCC-eEEEEECCCCcEEEEEEECCCCcc
Confidence                                    2223211011   133556888888777665 999999998776543221   1  


Q ss_pred             -CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---c-----------CCCceeEEEECCCCCEEEEEEcCCce
Q 013347          254 -GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S-----------TSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       254 -~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~-----------~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                       ..+..+.|. +++.++....++.|.+.|..+++.....   +           .....+.++|+|+++.+++++....+
T Consensus       151 ~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          151 VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence             246788888 7755555556789999999999873221   1           11356899999999999999888899


Q ss_pred             EEEEEeecC
Q 013347          319 LGSIHFASK  327 (444)
Q Consensus       319 ~~~~~~~~~  327 (444)
                      +..+++...
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            999998654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=4.2e-08  Score=89.43  Aligned_cols=208  Identities=7%  Similarity=-0.046  Sum_probs=126.3

Q ss_pred             ceEEEEEecCCCeEEEEEC-----CCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEeeCCCeEEEEe----cCCc
Q 013347          101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVG----CKGG  166 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~-----dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~ll~~~----~dg~  166 (444)
                      .+.+++++++|+++++-..     ++.|.+||+.+ ++....+..     .+...+..++++++++.++++.    .++.
T Consensus        68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            5899999999987766443     57899999986 443333321     1234568999998756665554    4689


Q ss_pred             EEEEecCCCCCcceeecc--ccccccccccCCCCceEEEE----EeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEE
Q 013347          167 ICIWAPSYPGNAASVRSG--AASFLGALSRGPGTRWTLVD----FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWD  240 (444)
Q Consensus       167 v~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd  240 (444)
                      |.+||+........+ .+  ...+.. .....++......    .+... ...+..++|+|+|+.|+++...++.+..++
T Consensus       147 i~v~d~~~g~~~r~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~g~~~~~-~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          147 LIRVDLQTGLAARVL-QGYPGIAPED-IDLVIDGVPVQIGQPDGTVIRP-HLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EEEEETTTCCEEEEC-TTCTTTSCCS-CCCEETTEECBEECTTSCEECC-CCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             EEEEECCCCCEEEEe-cCCCcccccc-cceeECCEEEEeccCCCceece-ecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            999998744322221 11  000000 0000011000000    00000 134688999999999998887764555555


Q ss_pred             cC---CCC--------ceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc--CCCceeEEEECCCCC
Q 013347          241 VA---QGL--------GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS--TSGFVTGATWDPEGR  307 (444)
Q Consensus       241 ~~---~~~--------~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~sp~g~  307 (444)
                      ..   .+.        ......+.+....++++++|+++++...++.|.+||..+++...+..  ....+.+++|.++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            32   111        01122334456679999999988888889999999995566543332  245688999999988


Q ss_pred             EEEEE
Q 013347          308 MILLA  312 (444)
Q Consensus       308 ~l~~~  312 (444)
                      ++++.
T Consensus       304 l~v~~  308 (343)
T 2qe8_A          304 LYFDC  308 (343)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.96  E-value=1.8e-07  Score=80.64  Aligned_cols=193  Identities=10%  Similarity=-0.036  Sum_probs=123.6

Q ss_pred             CCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          144 RDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      .....+.|+++ +.|+.++.   ++.|+++|+.+.+....+..+                       .+  .....+++ 
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-----------------------~~--~fgeGi~~-   73 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMD-----------------------DS--YFGEGLTL-   73 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECC-----------------------TT--CCEEEEEE-
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecC-----------------------CC--cceEEEEE-
Confidence            34678999998 46665543   489999999855443332211                       11  22334554 


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC-CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC--
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS--  294 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~--  294 (444)
                       +++.|+.+....+.+.++|..+.+.+...... ..  ...+++||+.++++..+++|.++|..+.+... +.  ...  
T Consensus        74 -~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           74 -LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR  150 (266)
T ss_dssp             -ETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred             -eCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence             45677776665559999999988766544332 22  23456688888777778899999999987632 22  111  


Q ss_pred             -CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-----------C---CceeEEEECC
Q 013347          295 -GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-----------S---QGIEKIAWDA  359 (444)
Q Consensus       295 -~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~v~~~~~sp  359 (444)
                       ..++.+.|. +| .+++....+..+..++...             ++.+..+.-           +   .....++|+|
T Consensus       151 ~~~~nele~~-dg-~lyvn~~~~~~V~vID~~t-------------g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~  215 (266)
T 2iwa_A          151 VIRLNELEYI-NG-EVWANIWQTDCIARISAKD-------------GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ  215 (266)
T ss_dssp             CCCEEEEEEE-TT-EEEEEETTSSEEEEEETTT-------------CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred             cccceeEEEE-CC-EEEEecCCCCeEEEEECCC-------------CcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence             236788888 66 5666666667777777532             222222211           0   1458999999


Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCC
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      +++.|++++...     +.+++.++..
T Consensus       216 ~~~~lfVTgk~~-----~~v~~i~l~~  237 (266)
T 2iwa_A          216 ENKRIFVTGKLW-----PKLFEIKLHL  237 (266)
T ss_dssp             TTTEEEEEETTC-----SEEEEEEEEE
T ss_pred             CCCEEEEECCCC-----CeEEEEEEec
Confidence            998888777653     7888888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.96  E-value=2.7e-07  Score=83.22  Aligned_cols=186  Identities=7%  Similarity=-0.007  Sum_probs=116.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecC------------------CCCCeEEEEEeeCCCeEEEEec
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD------------------SQRDVKVLEWRPNGGRSLSVGC  163 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~------------------~~~~v~~l~~s~~~~~ll~~~~  163 (444)
                      ..+++|+++|+++.++..++.|..|+... +.........                  ....+..+++.++++.|+++..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPN-SGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTT-TCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCC-CceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            45788999999788888889999998764 2222111100                  0135788999983367777766


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEee-----------
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASY-----------  231 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~-----------  231 (444)
                      .+.|..++.... ....+..                     ...+........+++.+ +|+..++-..           
T Consensus       100 ~~~i~~~d~~~g-~~~~~~~---------------------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~  157 (322)
T 2fp8_A          100 YYHLSVVGSEGG-HATQLAT---------------------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI  157 (322)
T ss_dssp             TTEEEEECTTCE-ECEEEES---------------------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred             CCCEEEEeCCCC-EEEEecc---------------------cCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence            666777776521 1111110                     01111113578899999 8976665432           


Q ss_pred             ------CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCCCc---eeccccCCCceeEEE
Q 013347          232 ------ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT---SEPWSSTSGFVTGAT  301 (444)
Q Consensus       232 ------d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~---~~~~~~~~~~v~~~~  301 (444)
                            ++ .|..||..+++...+.........++|+|+++.|+.+ ...+.|.+|++.+..   ...+....+ ...++
T Consensus       158 ~~~~~~~g-~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          158 MDTSDKTG-RLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK  235 (322)
T ss_dssp             HHHTCCCE-EEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred             hcccCCCc-eEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence                  24 7888888766544433333455679999999876554 556899999987532   222222223 78899


Q ss_pred             ECCCCCEEEEE
Q 013347          302 WDPEGRMILLA  312 (444)
Q Consensus       302 ~sp~g~~l~~~  312 (444)
                      +.++|++.++.
T Consensus       236 ~d~~G~l~va~  246 (322)
T 2fp8_A          236 RNADGHFWVSS  246 (322)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999865544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.95  E-value=2.4e-07  Score=92.29  Aligned_cols=288  Identities=12%  Similarity=0.063  Sum_probs=154.6

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecC-CCCCeEEEEEe---eCCCeEEEEec------CCcEEEEecCCCCCcc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWR---PNGGRSLSVGC------KGGICIWAPSYPGNAA  179 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~v~~l~~s---~~~~~ll~~~~------dg~v~iw~~~~~~~~~  179 (444)
                      ++..+++++.|+.|..+|..+ ++........ +......+..+   .+ +.++++..      ++.|+.||..+++...
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W  197 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAW  197 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTT-CCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEccCCEEEEEECCC-CCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence            356778888999999999988 5555444322 21111111111   14 45555542      5889999998766554


Q ss_pred             eeeccccccccc-----c----ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----------------
Q 013347          180 SVRSGAASFLGA-----L----SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------------  234 (444)
Q Consensus       180 ~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----------------  234 (444)
                      ........+...     +    ..-..+.|..   ..++ ......++++|++..++.++.++.                
T Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~---~~~g-~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y  273 (689)
T 1yiq_A          198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE---QGGG-GTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF  273 (689)
T ss_dssp             EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH---HCEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred             EecccCCCcccccccccccccccccCCceeee---cCCC-CccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            443221100000     0    0000011100   0011 112236788898888888877641                


Q ss_pred             --eEEEEEcCCCCceeeecC---C-------CCeEEEEEecCCC---eEEEEecCCcEEEEECCCCceec---ccc----
Q 013347          235 --SFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSEP---WSS----  292 (444)
Q Consensus       235 --~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~~---~~~----  292 (444)
                        .|..+|.++++.+.....   .       ..+.......+|+   .++.++.+|.++++|.++++...   +..    
T Consensus       274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  353 (689)
T 1yiq_A          274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT  353 (689)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence              399999999987754331   1       1222222333565   68888999999999999998741   000    


Q ss_pred             ----------------------CC-----------CceeEEEECCCCCEEEEEEcCCceEEEEEeecCC-------C--C
Q 013347          293 ----------------------TS-----------GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-------P--S  330 (444)
Q Consensus       293 ----------------------~~-----------~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~-------~--~  330 (444)
                                            ..           ..-..++|+|+..++++...+.....  ......       .  .
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~--~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY--EHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE--ECCSSCCCCCSCTTSCC
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee--eeccccccccccccccc
Confidence                                  00           01123788998888876643211111  100000       0  0


Q ss_pred             c---------------------CCCc--CC-CCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          331 L---------------------DAHL--LP-VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       331 ~---------------------~~~~--~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      .                     .+.+  ++ .+++.+-.+..+.++..-.++..+.++++++.|      +.|++||.++
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~d------g~l~a~D~~t  505 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSAD------GRVIAYAADT  505 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTT------SEEEEEETTT
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCC------CcEEEEECCC
Confidence            0                     0000  00 122223333333333334555677888888877      9999999999


Q ss_pred             CCeEEEEEeeeee-CCCCCCcceeeeeCCCC
Q 013347          387 TPLISLSLIGFIR-GPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       387 ~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~  416 (444)
                      ++.+.     .++ ++......+.|+.||+.
T Consensus       506 G~~lw-----~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          506 GEKLW-----EQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             CCEEE-----EEECSSCCCSCCEEEEETTEE
T ss_pred             Cccce-----eeeCCCCcccCceEEEECCEE
Confidence            99872     222 22333356788889874

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=3.9e-07  Score=90.66  Aligned_cols=280  Identities=12%  Similarity=0.086  Sum_probs=155.4

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecC-CC---CCeEEEEEeeCCCeEEEEec------CCcEEEEecCCCCCcc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQ---RDVKVLEWRPNGGRSLSVGC------KGGICIWAPSYPGNAA  179 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~-~~---~~v~~l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~  179 (444)
                      ++..|++++.|+.|..+|..+ ++........ ..   ..+.+--...+ +.+++++.      ++.|+.||..+++...
T Consensus       127 ~~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTT-CCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCC-CCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            456778888999999999988 5555544322 10   11221111123 56666553      6899999998766554


Q ss_pred             eeecccccccccc----------ccCC-CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC---------------
Q 013347          180 SVRSGAASFLGAL----------SRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---------------  233 (444)
Q Consensus       180 ~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------------  233 (444)
                      ............+          .+.. ...|..    .+. ......++++|++..++.+..++               
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~----~~g-~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~  279 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEA----GGG-GTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDN  279 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHH----CEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred             EeccCCCCccccccccccccccccccccCceeEe----CCC-cccccceeEcCCCCEEEEECCCCccccCCCCCccCCCC
Confidence            4433211100000          0000 000000    011 12234678889888888776553               


Q ss_pred             ---CeEEEEEcCCCCceeeecC---C-------CCeEEEEEecCC---CeEEEEecCCcEEEEECCCCceeccc--cC--
Q 013347          234 ---SSFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTSEPWS--ST--  293 (444)
Q Consensus       234 ---~~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~~---~~l~~~~~d~~v~iwd~~~~~~~~~~--~~--  293 (444)
                         +.|..+|.++++.+.....   .       .....+....+|   +.++.++.+|.|+++|..+++.....  ..  
T Consensus       280 ~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          280 LYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN  359 (677)
T ss_dssp             TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence               1499999999987654331   1       122233344477   67888999999999999999873211  00  


Q ss_pred             --------CCce------------------------eEEEECCCCCEEEEEEcCCceE----------------------
Q 013347          294 --------SGFV------------------------TGATWDPEGRMILLAFAGSLTL----------------------  319 (444)
Q Consensus       294 --------~~~v------------------------~~~~~sp~g~~l~~~~~~~~~~----------------------  319 (444)
                              ...+                        ..++|+|++.++++...+-...                      
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence                    0000                        2578899988887654321110                      


Q ss_pred             -----------------EEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEE
Q 013347          320 -----------------GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       320 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vw  382 (444)
                                       ..+..++.          .+++.+-.+....++....+..++.++++++.+      +.+++|
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~----------~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~d------g~l~a~  503 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDP----------VAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTAD------GRLVAY  503 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEET----------TTTEEEEEEEESSSCCCCEEEETTTEEEEECTT------SEEEEE
T ss_pred             cccccccccccCCCCCccEEEEEeC----------CCCcEEeecCCCCCCcCcceEeCCCEEEEECCC------CcEEEE
Confidence                             11111110          122222222222234455566778888888777      999999


Q ss_pred             EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      |.++++.+....    .++......+.|+.+|+.
T Consensus       504 D~~tG~~lw~~~----~~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          504 HAATGEKLWEAP----TGTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             ETTTCCEEEEEE----CSSCCCSCCEEEEETTEE
T ss_pred             ECCCCceeeeee----CCCCcccCCEEEEeCCEE
Confidence            999999873221    133333456677888874

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.92  E-value=1.4e-05  Score=72.76  Aligned_cols=238  Identities=8%  Similarity=-0.059  Sum_probs=145.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcc
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~  179 (444)
                      ..+|.+..+++ +|+.+ ....|+..++..  .....+. .....+..++|++.++.|+.+.. .+.|..++++......
T Consensus        35 ~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g--~~~~~~~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           35 RRSCKALGPEP-VLLFA-NRIDIRQVLPHR--SEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             SSCEEESSSCC-EEEEE-CBSCEEEECTTS--CCEEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCcccccccCc-eeEee-cccceEEEeCCC--CeeEEee-cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            34566666643 44443 445677777764  3333332 23345889999987677777654 4888888877332111


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~  258 (444)
                      .+..+                          ......+++.+.+..|+.+....+.|.+.++.......+.. .......
T Consensus       110 ~~~~~--------------------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~  163 (349)
T 3v64_C          110 VVSTG--------------------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  163 (349)
T ss_dssp             EECSS--------------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred             EEeCC--------------------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence            11111                          13567889988666665554433499999988665444443 3356789


Q ss_pred             EEEecCCCeE-EEEecC-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          259 LKWSPTGDYF-FAAKFD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       259 ~~~sp~~~~l-~~~~~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ++++|.+..| ++-... +.|..+++.......+. ..-...+.++++|++..|+.+-.....+..+++..         
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG---------  234 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG---------  234 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS---------
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC---------
Confidence            9999966655 444444 78999998865544332 33456799999999888888877777777777521         


Q ss_pred             CCCCcccccccc-c-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          336 LPVDLPDIVSLT-G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       336 ~~~~~~~~~~~~-~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                           ...+.+. . ......+++  ++..|..+....     +.|..++..+++..
T Consensus       235 -----~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-----~~V~~~~~~~G~~~  279 (349)
T 3v64_C          235 -----SHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-----KSINSANKFTGKNQ  279 (349)
T ss_dssp             -----CSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred             -----CceEEEEeCCCCCceEEEE--ECCEEEEecCCC-----CeEEEEEccCCCcc
Confidence                 1111111 1 114567777  334555555443     78988886655543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.87  E-value=1.7e-06  Score=87.27  Aligned_cols=190  Identities=12%  Similarity=0.034  Sum_probs=109.4

Q ss_pred             ceEEEEEe-cCCCeEEEEEC-CC----eEEEEEccCCCCc-eeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEE
Q 013347          101 DLQGVSWH-QHKHIVAFISG-ST----QVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGIC  168 (444)
Q Consensus       101 ~v~~~~~s-p~g~~la~~~~-dg----~v~iw~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~  168 (444)
                      .+...+|| |||++||.+.. +|    +|+++|+.++.+. ...+    ......++|+|||+.|+.+..+     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV----SGTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE----EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc----cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57889999 99999997653 22    4999999873031 1111    1123468899999888888765     2466


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--CeEEEEEcCCCC-
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--SSFTIWDVAQGL-  245 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~~i~iwd~~~~~-  245 (444)
                      ++++.+......                     +  .+..........+.|+|||++|+..+..+  ..|.++|+.++. 
T Consensus       251 ~~~lgt~~~~~~---------------------l--v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~  307 (751)
T 2xe4_A          251 RHVMGKLQSEDV---------------------C--LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA  307 (751)
T ss_dssp             EEETTSCGGGCE---------------------E--EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred             EEECCCCchhcE---------------------E--EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence            666653221111                     0  11111123467889999999988766432  268888988752 


Q ss_pred             -c--eeeec-CCCCeEEEEEecCCCeE-EEEecC----CcEEEEECCC-Cceec-cccCCCceeEEEECCCCCEEEEEEc
Q 013347          246 -G--TPIRR-GFGGLSILKWSPTGDYF-FAAKFD----GTFYLWETNT-WTSEP-WSSTSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       246 -~--~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d----~~v~iwd~~~-~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                       .  ..+.. ......++.|+. |+.| +....+    ..|..+|+.+ ++... +..+...+.--.+++.+..|++...
T Consensus       308 ~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~  386 (751)
T 2xe4_A          308 HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR  386 (751)
T ss_dssp             CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE
T ss_pred             CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE
Confidence             3  33333 234455666554 5555 444443    3677778765 33344 4444443322234445666666555


Q ss_pred             CCce
Q 013347          315 GSLT  318 (444)
Q Consensus       315 ~~~~  318 (444)
                      .++.
T Consensus       387 ~~g~  390 (751)
T 2xe4_A          387 RAGL  390 (751)
T ss_dssp             ETTE
T ss_pred             eCCE
Confidence            4443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.85  E-value=1.1e-06  Score=74.74  Aligned_cols=188  Identities=12%  Similarity=0.066  Sum_probs=121.6

Q ss_pred             eEEEEEecCCCeEEEEECCC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+ ++.......  ..........+++++++.... ++.+.+||.++.+..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            4678888 677666666665  899999998 555544432  233444334445566666654 699999999854443


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC---C--
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---F--  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---~--  253 (444)
                      ..+...                         .    ....+++|++.|+.+...+ .|.++|..+.+......-   .  
T Consensus       121 ~ti~~~-------------------------~----eG~glt~dg~~L~~SdGs~-~i~~iDp~T~~v~~~I~V~~~g~~  170 (262)
T 3nol_A          121 RSFNYD-------------------------G----EGWGLTHNDQYLIMSDGTP-VLRFLDPESLTPVRTITVTAHGEE  170 (262)
T ss_dssp             EEEECS-------------------------S----CCCCEEECSSCEEECCSSS-EEEEECTTTCSEEEEEECEETTEE
T ss_pred             EEEECC-------------------------C----CceEEecCCCEEEEECCCC-eEEEEcCCCCeEEEEEEeccCCcc
Confidence            333221                         1    1123335778777776665 899999998876543221   1  


Q ss_pred             -CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc------c-------CCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          254 -GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------S-------TSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       254 -~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~------~-------~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                       ..+..+.|. +|+..+..-.++.|.+.|.++++.....      .       .....+.++|+|+++.|++++..=..+
T Consensus       171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~  249 (262)
T 3nol_A          171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKV  249 (262)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCce
Confidence             345567887 7765566656889999999999873211      1       123569999999998888876544555


Q ss_pred             EEEEe
Q 013347          320 GSIHF  324 (444)
Q Consensus       320 ~~~~~  324 (444)
                      +.+++
T Consensus       250 ~ev~~  254 (262)
T 3nol_A          250 FEITL  254 (262)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.85  E-value=2.4e-06  Score=76.88  Aligned_cols=260  Identities=12%  Similarity=0.055  Sum_probs=141.9

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecc-ccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-C
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG-AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-D  222 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~  222 (444)
                      ...+++|.+++..+++...++.|..|+..... ...+... .... ....   ++...  ...... ...+..+++.+ +
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~-~~~~---~g~~~--~~~~~~-~~~p~gi~~~~~~   91 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWN-KAFC---ENSTD--AEKRPL-CGRTYDISYNLQN   91 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCC-HHHH---TTCCC--GGGHHH-HCCEEEEEEETTT
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEeccccccc-cccc---ccccc--hhcccc-CCCCceEEEcCCC
Confidence            45678899996657777778899999876321 1111100 0000 0000   00000  000000 13578899998 5


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCceeeecC-----CCCeEEEEEec-CCCeEEEEec-----------------CCcEEE
Q 013347          223 GRYLASASYESSSFTIWDVAQGLGTPIRRG-----FGGLSILKWSP-TGDYFFAAKF-----------------DGTFYL  279 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~sp-~~~~l~~~~~-----------------d~~v~i  279 (444)
                      ++ |+.+...+ .|..+|..++....+...     ......+++.+ +|++.++...                 ++.|..
T Consensus        92 g~-l~v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQ-LYIVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TE-EEEEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             Cc-EEEEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            55 55555555 688888776544333211     13578899999 9987666432                 367889


Q ss_pred             EECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECC
Q 013347          280 WETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA  359 (444)
Q Consensus       280 wd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  359 (444)
                      ||..+++...+.......+.++|+|+|+.|+++......++.+.+....      .  ........+.   ....+++++
T Consensus       170 ~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~------~--~~~~~~~~~~---gP~gi~~d~  238 (322)
T 2fp8_A          170 YDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK------K--GTAEVLVKIP---NPGNIKRNA  238 (322)
T ss_dssp             EETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT------T--TCEEEEEECS---SEEEEEECT
T ss_pred             EeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc------C--CccceEEeCC---CCCCeEECC
Confidence            9988776544332233457899999999888776655667766653210      0  0011111111   167889999


Q ss_pred             CCCEEEEEecCCCc----cccceEEEEEcCCCCeEEEEEeeeeeCC----CCCCcceeeeeCCCCCCCceEEEEecccee
Q 013347          360 SGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  431 (444)
Q Consensus       360 dg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~i~~v~~spdg~~~~~~~l~~~~~~g~i  431 (444)
                      +|++.++.......    ...+.|..+|.. ++.+     ..+...    -..++.+++ .+|+     +......+++|
T Consensus       239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~-----~~~~~~~g~~~~~~~~~~~-~~g~-----L~v~~~~~~~i  306 (322)
T 2fp8_A          239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNIL-----EVIPLPPPFAGEHFEQIQE-HDGL-----LYIGTLFHGSV  306 (322)
T ss_dssp             TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEE-----EEEECCTTTTTSCCCEEEE-ETTE-----EEEECSSCSEE
T ss_pred             CCCEEEEecCcccccccCCCccEEEEECCC-CCEE-----EEEECCCCCccccceEEEE-eCCE-----EEEeecCCCce
Confidence            99977766440000    000678888875 4443     223322    234555655 3333     33344567888


Q ss_pred             eeeeee
Q 013347          432 CTYPLI  437 (444)
Q Consensus       432 ~~~~~~  437 (444)
                      ..|++.
T Consensus       307 ~~~~~~  312 (322)
T 2fp8_A          307 GILVYD  312 (322)
T ss_dssp             EEEEC-
T ss_pred             EEEecc
Confidence            888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.83  E-value=1.3e-05  Score=74.00  Aligned_cols=253  Identities=9%  Similarity=-0.058  Sum_probs=150.2

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~  180 (444)
                      -.|.+..+. .+|+.+ ....|+.+++.. ... ..+. .....+..++|.+.++.|+.+.. .+.|+.++.+.... ..
T Consensus        79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~-~~~-~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~  152 (386)
T 3v65_B           79 RSCKALGPE-PVLLFA-NRIDIRQVLPHR-SEY-TLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE  152 (386)
T ss_dssp             SCEEECSSC-CEEEEE-CBSCEEEECTTS-CCC-EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EE
T ss_pred             CeECCcccc-ceeEee-cCccceeeccCC-CcE-EEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EE
Confidence            345555553 344443 456677777765 222 2332 23345889999987677777654 48888888763221 11


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~  259 (444)
                      +                        +... ......+++.+.+..|+.+....+.|.+.++.......+.. .......+
T Consensus       153 ~------------------------~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi  207 (386)
T 3v65_B          153 V------------------------VSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI  207 (386)
T ss_dssp             E------------------------ECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred             E------------------------EeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence            1                        1111 13456788888666665555433489999987655444443 33678899


Q ss_pred             EEecCCCeEEEE-ecC-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          260 KWSPTGDYFFAA-KFD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       260 ~~sp~~~~l~~~-~~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      +++|.+..|+.+ ... +.|..+++.......+. ..-...+.++|+|++..|+.+-.....+..+++..          
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG----------  277 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----------  277 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS----------
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----------
Confidence            999977666444 344 68999998765543332 33446789999998888888877777777766421          


Q ss_pred             CCCccccccccc--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          337 PVDLPDIVSLTG--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       337 ~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                          .....+..  ......+++  ++..|..+...+     +.|..++..+++..     ..+......+..+++.
T Consensus       278 ----~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-----~~V~~~~~~~G~~~-----~~i~~~~~~p~gi~v~  338 (386)
T 3v65_B          278 ----SHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-----KSINSANKFTGKNQ-----EIIRNKLHFPMDIHTL  338 (386)
T ss_dssp             ----CSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCSC-----EEEECSCSCCCCEEEE
T ss_pred             ----CeeEEEEECCCCCceEEEE--ECCEEEEeeCCC-----CeEEEEECCCCcce-----EEEccCCCCCceEEEE
Confidence                11111111  124567777  333455554442     88999996666544     2233333345566553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.82  E-value=5.9e-05  Score=67.49  Aligned_cols=228  Identities=9%  Similarity=-0.014  Sum_probs=139.9

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCC---CCcceeecccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASF  188 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~---~~~~~~~~~~~~~  188 (444)
                      +|+.+ ....|+..++.. .....++  .....+..++|+++++.++.+.. .+.|..++++..   .....        
T Consensus         3 ~ll~~-~~~~I~~i~~~~-~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~--------   70 (316)
T 1ijq_A            3 YLFFT-NRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--------   70 (316)
T ss_dssp             EEEEE-CBSSEEEEETTS-CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE--------
T ss_pred             EEEEE-CCCeEEEEECCC-cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE--------
Confidence            34443 445688888886 3333333  33456889999997677777765 488888887631   11110        


Q ss_pred             ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCe
Q 013347          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDY  267 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~  267 (444)
                                      .+... ...+..+++.+.+..|+.+....+.|.++++.......+.. .......++++|.+..
T Consensus        71 ----------------~~~~~-~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~  133 (316)
T 1ijq_A           71 ----------------VISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF  133 (316)
T ss_dssp             ----------------EECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTE
T ss_pred             ----------------EEeCC-CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCE
Confidence                            01111 13567899987666665554433499999987654444433 3467889999997666


Q ss_pred             EEEEec-C-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc
Q 013347          268 FFAAKF-D-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  344 (444)
Q Consensus       268 l~~~~~-d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                      |+.+.. . +.|..+++.......+. ..-...+.++++|++..|+.+......+..+++..              ...+
T Consensus       134 ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--------------~~~~  199 (316)
T 1ijq_A          134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRK  199 (316)
T ss_dssp             EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCE
T ss_pred             EEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--------------CceE
Confidence            654443 3 68988888765443332 23456789999999988888877777787777521              1111


Q ss_pred             ccc-c---CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          345 SLT-G---SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       345 ~~~-~---~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .+. .   ......+++.  +..|+.+...+     +.|..++..+++..
T Consensus       200 ~~~~~~~~~~~P~giav~--~~~ly~~d~~~-----~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          200 TILEDEKRLAHPFSLAVF--EDKVFWTDIIN-----EAIFSANRLTGSDV  242 (316)
T ss_dssp             EEEECTTTTSSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred             EEeecCCccCCcEEEEEE--CCEEEEEECCC-----CeEEEEeCCCCcce
Confidence            121 1   1135677774  34555555442     88999998766543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.78  E-value=5.4e-06  Score=74.00  Aligned_cols=222  Identities=14%  Similarity=0.084  Sum_probs=131.2

Q ss_pred             CCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          144 RDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      .....++|++++. ++++. ..+.|..|+.+.  ....                        .+..  ...+..+++.++
T Consensus        32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g--~~~~------------------------~~~~--~~~p~gia~~~d   82 (306)
T 2p4o_A           32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQQI------------------------HATV--EGKVSGLAFTSN   82 (306)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTTEEEEECTTC--CEEE------------------------EEEC--SSEEEEEEECTT
T ss_pred             CCcceEEECCCCC-EEEEeCCCCeEEEECCCC--ceEE------------------------EEeC--CCCceeEEEcCC
Confidence            4577899999865 55554 568888888652  1111                        1111  246889999999


Q ss_pred             CCeEEEEeeCC-CeEEEEEcCCCCceeeecC--CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec----------
Q 013347          223 GRYLASASYES-SSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----------  289 (444)
Q Consensus       223 ~~~l~~~~~d~-~~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----------  289 (444)
                      |+++++....+ ..|..+|..+++...+...  ......++..+++..+++-..++.|+.+|..+++...          
T Consensus        83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A           83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence            99655543332 1477777777765544332  2234455555555545554468899999987653211          


Q ss_pred             -cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe
Q 013347          290 -WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY  368 (444)
Q Consensus       290 -~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~  368 (444)
                       ....-...+.+  +|+++.|+++......++.+++...     +.+     .....+........++++++|+++++..
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-----g~~-----~~~~~~~~~~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-----DKP-----GEPEIFVEQTNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-----SCB-----CCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-----CCC-----CccEEEeccCCCCCeEECCCCCEEEEeC
Confidence             01111234555  8899988888877788888876321     000     0111111112457789999998766554


Q ss_pred             cCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee---eCCCC
Q 013347          369 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS---FHDKF  416 (444)
Q Consensus       369 ~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s---pdg~~  416 (444)
                      ..      +.|.+++.. ++...   +..+......+++++|.   ||++.
T Consensus       231 ~~------~~V~~~~~~-G~~~~---~~~~~~~~~~p~~~a~~g~~~d~~~  271 (306)
T 2p4o_A          231 IY------NSVVRIAPD-RSTTI---IAQAEQGVIGSTAVAFGQTEGDCTA  271 (306)
T ss_dssp             TT------CCEEEECTT-CCEEE---EECGGGTCTTEEEEEECCSTTTTTE
T ss_pred             CC------CeEEEECCC-CCEEE---EeecccccCCceEEEEecccCCCCE
Confidence            44      789999976 44421   11222223557889998   78664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.77  E-value=2e-06  Score=73.13  Aligned_cols=187  Identities=12%  Similarity=0.042  Sum_probs=117.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcce
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~  180 (444)
                      ...+.|+ ++.++.+.+.+|.|+++|+.+ ++...... .  .........+++++++... .++.+.+||.++.+.   
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~T-gkv~~~~l-~--~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~---  128 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLES-AQPVWMER-L--GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR---  128 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSC-SSCSEEEE-C--TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE---
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCC-CcEEeEEC-C--CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE---
Confidence            4567787 456666777888999999998 44444432 2  2333322334445555554 469999999984433   


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---CC---C
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF---G  254 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~---~  254 (444)
                                            +.++....  .-..++  +|++.|+.+..++ .|.++|..+.+......   ..   .
T Consensus       129 ----------------------~~ti~~~~--eGwGLt--~Dg~~L~vSdGs~-~l~~iDp~T~~v~~~I~V~~~g~~v~  181 (268)
T 3nok_A          129 ----------------------ERTTRYSG--EGWGLC--YWNGKLVRSDGGT-MLTFHEPDGFALVGAVQVKLRGQPVE  181 (268)
T ss_dssp             ----------------------EEEEECSS--CCCCEE--EETTEEEEECSSS-EEEEECTTTCCEEEEEECEETTEECC
T ss_pred             ----------------------EEEEeCCC--ceeEEe--cCCCEEEEECCCC-EEEEEcCCCCeEEEEEEeCCCCcccc
Confidence                                  33333221  112333  5778887776666 99999999887654322   11   2


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--------------cCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      .+..+.|. +|+.++....++.|.+.|.++++.....              ....-.+.|+|+|+++.|++++-.=..++
T Consensus       182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~  260 (268)
T 3nok_A          182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLF  260 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEE
T ss_pred             cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceE
Confidence            45677887 7765555556889999999999873211              12235799999998877777654333444


Q ss_pred             EEEe
Q 013347          321 SIHF  324 (444)
Q Consensus       321 ~~~~  324 (444)
                      .+++
T Consensus       261 ev~~  264 (268)
T 3nok_A          261 EVRL  264 (268)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.76  E-value=4.8e-07  Score=81.62  Aligned_cols=263  Identities=10%  Similarity=-0.030  Sum_probs=148.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      +.++...++|.+++ ++.+  +..+|. + ++...... ..........+. + +.+.+++.++.|..+|.. .......
T Consensus        62 ~~~~~~~~~g~l~v-~t~~--l~~~d~-~-g~~~~~~~-~~~~~~~~~~~~-~-~~l~v~t~~~~l~~~d~~-g~~~~~~  132 (330)
T 3hxj_A           62 ECRPSIGKDGTIYF-GSDK--VYAINP-D-GTEKWRFD-TKKAIVSDFTIF-E-DILYVTSMDGHLYAINTD-GTEKWRF  132 (330)
T ss_dssp             EECCEETTTTEECC-SSCE--EEEECC-C-GGGGGGSC-C-----CCEEEE-T-TEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred             ccceEEecCCcEEE-ecCc--EEEECC-C-CcEEEEEE-CCCCcccCceEE-C-CEEEEEecCCEEEEEcCC-CCEEEEE
Confidence            56677777776544 3333  777775 2 33322221 112222233333 4 678888778999999876 3221111


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILK  260 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~  260 (444)
                                               ... ...+.++...+++. ++.++.++ .|..+|.. ++..... .....+.++.
T Consensus       133 -------------------------~~~-~~~~~~~~~~~~g~-l~vgt~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          133 -------------------------KTK-KAIYATPIVSEDGT-IYVGSNDN-YLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             -------------------------ECS-SCCCSCCEECTTSC-EEEECTTS-EEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             -------------------------cCC-CceeeeeEEcCCCE-EEEEcCCC-EEEEECCC-CCEeEEEecCCCceeeeE
Confidence                                     111 13455666777776 55566666 89999988 6554333 3345566777


Q ss_pred             EecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          261 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       261 ~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      ..+++..++ ++  +.|..+| .+++.. ........+.++...++|...+ +..+ +.+..++.              +
T Consensus       184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-~gl~~~~~--------------~  243 (330)
T 3hxj_A          184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLD-GHLYAINP--------------D  243 (330)
T ss_dssp             ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETT-TEEEEECT--------------T
T ss_pred             EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCC-CeEEEECC--------------C
Confidence            777777544 44  7899999 565542 3333445678888998887655 4332 33444321              1


Q ss_pred             cccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCC
Q 013347          340 LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ  418 (444)
Q Consensus       340 ~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~  418 (444)
                      ...+..+.... .+..+.+.++|. |.+++.+      +.|..+|. +++...     .+......+.++...++|+   
T Consensus       244 g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~------ggl~~~d~-~g~~~~-----~~~~~~~~~~~~~~d~~g~---  307 (330)
T 3hxj_A          244 GTEKWRFKTGKRIESSPVIGNTDT-IYFGSYD------GHLYAINP-DGTEKW-----NFETGSWIIATPVIDENGT---  307 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTSC-EEEECTT------CEEEEECT-TSCEEE-----EEECSSCCCSCCEECTTCC---
T ss_pred             CCEeEEeeCCCCccccceEcCCCe-EEEecCC------CCEEEECC-CCcEEE-----EEEcCCccccceEEcCCCE---
Confidence            22222222222 334556666775 4455555      78999996 555442     2223345566777766765   


Q ss_pred             CceEEEEeccceeeeeeeeeecc
Q 013347          419 GPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       419 ~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                         |-++..+|.+++.+.....+
T Consensus       308 ---l~~gt~~G~~~~~~~~~~~~  327 (330)
T 3hxj_A          308 ---IYFGTRNGKFYALFNLEHHH  327 (330)
T ss_dssp             ---EEEECTTSCEEEEEC-----
T ss_pred             ---EEEEcCCCeEEEEecccccc
Confidence               56788999999988765543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.74  E-value=5.7e-05  Score=67.53  Aligned_cols=230  Identities=10%  Similarity=-0.004  Sum_probs=140.8

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|+.+ ....|+.++++.......... .....+.+++|.+.++.|+.+.. .+.|..++.+.......+.         
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~---------   74 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------   74 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE---------
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE---------
Confidence            34443 456788888876321222221 22235678999987677776654 4788888876332111110         


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  270 (444)
                                     ... -.....+++.+.+..|+.+....+.|.++++.......+. ........++++|.+..|+.
T Consensus        75 ---------------~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           75 ---------------VSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             ---------------EEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred             ---------------cCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence                           001 1356788998765556555443349999998765544443 33466789999997666655


Q ss_pred             Ee--cCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          271 AK--FDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       271 ~~--~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      +.  ..+.|...++.......+ ...-...+.++++|++..|+.+-.....++.+++..              ...+.+.
T Consensus       139 td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~~~  204 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAVV  204 (318)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEEE
T ss_pred             EecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--------------CceEEEe
Confidence            44  357899998876544333 233456789999999888888877777888777521              1111221


Q ss_pred             c--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          348 G--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       348 ~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .  ......+++.  +..++.+...+     +.|..++..+++..
T Consensus       205 ~~~~~~P~glav~--~~~lywtd~~~-----~~V~~~~~~~G~~~  242 (318)
T 3sov_A          205 KGSLPHPFALTLF--EDILYWTDWST-----HSILACNKYTGEGL  242 (318)
T ss_dssp             CSCCSCEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCSC
T ss_pred             cCCCCCceEEEEe--CCEEEEEecCC-----CeEEEEECCCCCce
Confidence            1  1145677774  33455444432     89999999776653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.73  E-value=3e-05  Score=70.45  Aligned_cols=194  Identities=9%  Similarity=-0.023  Sum_probs=122.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      ..+..++|++....|+.+...++.|..+++.......+.. .......+++++.+..| ++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4688999998777777666544599999998776555433 23456789999865555 555567899999998665433


Q ss_pred             cc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCCCEEE
Q 013347          290 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLA  365 (444)
Q Consensus       290 ~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~  365 (444)
                      +. ........++++|.+..|+.+.... ..++.+.+.              +.....+..  -.....++|+|+++.|.
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGla~d~~~~~lY  218 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY  218 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEESCCSSCSCEEEEEEETTTTEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCcceEEEeCCCCEEE
Confidence            32 3345678999999888888776555 666666542              222222211  12578999999888888


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      .+....     +.|..+++.......     .+......+..+++. .+.     +.-..|.+++|..++
T Consensus       219 ~aD~~~-----~~I~~~~~dG~~~~~-----~~~~~~~~P~giav~-~~~-----ly~td~~~~~V~~~~  272 (349)
T 3v64_C          219 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-EDS-----LYWTDWHTKSINSAN  272 (349)
T ss_dssp             EEETTT-----TEEEEEETTSCSCEE-----EECSSCSSEEEEEEE-TTE-----EEEEETTTTEEEEEE
T ss_pred             EEECCC-----CEEEEEeCCCCceEE-----EEeCCCCCceEEEEE-CCE-----EEEecCCCCeEEEEE
Confidence            776553     789999987543321     122223344566662 222     233445566665543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.72  E-value=4.5e-05  Score=68.28  Aligned_cols=158  Identities=13%  Similarity=-0.007  Sum_probs=102.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCC----CCceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW  285 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~----~~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~  285 (444)
                      ..+..++|+++++.|+.+...++.|..+++..    .....+.. .......+++++.+..| ++-...+.|.++|+...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            56889999997777766665545999999876    22233332 22456789999765555 55566789999999865


Q ss_pred             ceeccc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCC
Q 013347          286 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASG  361 (444)
Q Consensus       286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg  361 (444)
                      ....+. ........++++|.+..|+.+.... ..++.+.+              .+.....+..  -.....++++|++
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~--------------dG~~~~~~~~~~~~~P~gla~d~~~  175 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS  175 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC--------------CCCCeEEEEECCCCCceEEEEeccC
Confidence            544333 2345678999999877777665443 45555553              1222222211  1257899999998


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCC
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      +.|+.+....     +.|..+|+....
T Consensus       176 ~~lY~~D~~~-----~~I~~~d~dg~~  197 (316)
T 1ijq_A          176 GRLYWVDSKL-----HSISSIDVNGGN  197 (316)
T ss_dssp             TEEEEEETTT-----TEEEEEETTSCS
T ss_pred             CEEEEEECCC-----CeEEEEecCCCc
Confidence            8888776553     799999997543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.71  E-value=0.00017  Score=66.83  Aligned_cols=231  Identities=9%  Similarity=-0.023  Sum_probs=141.3

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|+.+ ....|+..++.. .......  .....+..|+|++.++.|+.+.. .+.|+.++++.......           
T Consensus        85 ~ll~~-~~~~I~~i~l~~-~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~-----------  149 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-----------  149 (400)
T ss_dssp             EEEEE-ETTEEEEECTTS-CSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC-----------
T ss_pred             eeEEe-ccceeEEEccCC-cceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc-----------
Confidence            44443 457888888875 2222222  34567889999997677777655 47888888763110000           


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~  270 (444)
                                ....+... ......+++.+.++.|+.+....+.|.+.++.......+.. .......++++|.+.+|+.
T Consensus       150 ----------~~~~~~~~-~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          150 ----------YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             ----------CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEE
T ss_pred             ----------ceEEEeCC-CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEE
Confidence                      00011111 24678899998555565555443499999988765544443 3456889999997666654


Q ss_pred             Ee-c-CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          271 AK-F-DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       271 ~~-~-d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      .. . .+.|...++.......+. ..-...+.+++++++..|+.+-.....+..+++..              ...+.+.
T Consensus       219 td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--------------~~~~~~~  284 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKTIL  284 (400)
T ss_dssp             EECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CCCEEEE
T ss_pred             EeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--------------CccEEEE
Confidence            43 2 478999998875554332 33457899999999999998877777777777521              1111221


Q ss_pred             -c--C-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          348 -G--S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       348 -~--~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                       .  . .....+++  ++..|+.+...+     +.|..+|..+++..
T Consensus       285 ~~~~~l~~P~gl~v--~~~~lywtd~~~-----~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          285 EDEKRLAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV  324 (400)
T ss_dssp             ECSSTTSSEEEEEE--ETTEEEEEESSS-----CSEEEEESSSCCCC
T ss_pred             eCCCCCCCCEEEEE--eCCEEEEecCCC-----CeEEEEEcCCCCce
Confidence             1  1 13456666  444555554443     78999997666543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.69  E-value=1.6e-05  Score=73.36  Aligned_cols=194  Identities=9%  Similarity=-0.023  Sum_probs=122.1

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      ..+..++|++.+..|+.+...++.|..+++.......+.. .......+++++.+..| ++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            5688999998777776666554599999988765444433 23456778999865555 555567789999987655433


Q ss_pred             cc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCCCEEE
Q 013347          290 WS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASGERLA  365 (444)
Q Consensus       290 ~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~  365 (444)
                      +. ........++++|.+..|+.+.... ..++.+.+.              +.....+..  -.....++|+|+++.|.
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~~~~PnGlavd~~~~~lY  261 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------------GSGRRIIADTHLFWPNGLTIDYAGRRMY  261 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------------CCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence            32 3345679999999888888776554 566665542              222222221  12578999999888888


Q ss_pred             EEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      .+....     +.|..+++.......     .+......+..+++. .+.     +.-..|.+++|..++
T Consensus       262 ~aD~~~-----~~I~~~d~dG~~~~~-----~~~~~~~~P~giav~-~~~-----ly~td~~~~~V~~~~  315 (386)
T 3v65_B          262 WVDAKH-----HVIERANLDGSHRKA-----VISQGLPHPFAITVF-EDS-----LYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEETTT-----TEEEEECTTSCSCEE-----EECSSCSSEEEEEEE-TTE-----EEEEETTTTEEEEEE
T ss_pred             EEECCC-----CEEEEEeCCCCeeEE-----EEECCCCCceEEEEE-CCE-----EEEeeCCCCeEEEEE
Confidence            776553     789999987543321     122222344566662 222     334456666666554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.68  E-value=1e-08  Score=94.42  Aligned_cols=145  Identities=10%  Similarity=0.037  Sum_probs=75.1

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ++..+++++.||.|+.||..+ ++...... .  +.+.+..+..++..+++++.|+.|+.||..+++........     
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~-~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-----   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLK-E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-----   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT-CCEEEEEE-C--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEec-C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-----
Confidence            577889999999999999988 66655543 2  45555556667556666678999999998754432221100     


Q ss_pred             cccccCCCCceEEEEEeeccCCCceE-EEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQIT-ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYF  268 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l  268 (444)
                                          ....+. +..+. ++..+++++.++ .++.||.++++.........   ...++|++..+
T Consensus        79 --------------------~~~~~~~sp~~~-~~~~v~~g~~dg-~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v  133 (369)
T 2hz6_A           79 --------------------IPELVQASPCRS-SDGILYMGKKQD-IWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLL  133 (369)
T ss_dssp             --------------------HHHHHTTCSCC------CCCCEEEE-EEEEECCC-------------------------E
T ss_pred             --------------------CccccccCceEe-cCCEEEEEeCCC-EEEEEECCCCcEEEEecCCC---cccccccCCEE
Confidence                                000000 00111 345677788887 99999999998765443322   23456788889


Q ss_pred             EEEecCCcEEEEECCCCcee
Q 013347          269 FAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       269 ~~~~~d~~v~iwd~~~~~~~  288 (444)
                      ++++.|+.|+.||.++++..
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCC
T ss_pred             EEEecCCEEEEEECCCCCEE
Confidence            99999999999999998863

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.66  E-value=6.7e-06  Score=69.97  Aligned_cols=191  Identities=15%  Similarity=0.124  Sum_probs=111.6

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCC--cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      ..-...|.|+ ++..+.+++.+|  .|+.+|+.+.+....+...                           .........
T Consensus        42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------~~~FgeGit   93 (262)
T 3nol_A           42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------KRYFGEGIS   93 (262)
T ss_dssp             TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------------------------TTCCEEEEE
T ss_pred             CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC---------------------------CccceeEEE
Confidence            3345789998 644445555555  8999999855443333211                           233333233


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC---
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS---  294 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~---  294 (444)
                      ++++.|+......+.+.+||.++.+.+........-..+  ++|++.|+.+..+++|.++|..+.+... +.  ...   
T Consensus        94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~  171 (262)
T 3nol_A           94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL  171 (262)
T ss_dssp             EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred             EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence            456677766654459999999998877655543332334  4577777776667889999999987732 22  222   


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-----cccCCceeEEEECCCCCEEEEEec
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGSQGIEKIAWDASGERLAVSYK  369 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~l~~~~~  369 (444)
                      ..++.+.|. +|+ |++....+..+..++..+..  ....+   ....+..     .......+.|+|+|+++.|++.+.
T Consensus       172 ~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~--V~~~I---d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          172 PELNELEWV-DGE-IFANVWQTNKIVRIDPETGK--VTGII---DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCB--EEEEE---ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cccceeEEE-CCE-EEEEEccCCeEEEEECCCCc--EEEEE---ECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            334567776 664 55566666666666642210  00000   0000000     001115689999999998888876


Q ss_pred             C
Q 013347          370 G  370 (444)
Q Consensus       370 d  370 (444)
                      .
T Consensus       245 ~  245 (262)
T 3nol_A          245 L  245 (262)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.65  E-value=2.5e-05  Score=69.61  Aligned_cols=221  Identities=14%  Similarity=0.129  Sum_probs=124.2

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCc--EEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG--ICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~--v~iw~~~~~~~~  178 (444)
                      ...++|+++|+++++-..++.|..|+...  ......  .....+..+++.++|+ ++++. ..+.  |..++..... .
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~--~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~-~  107 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHA--TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGT-V  107 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEE--ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSC-E
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEE--eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCe-E
Confidence            56899999999766655788988888764  333332  2235688999999976 44444 3333  5555544221 1


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee--e------
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--R------  250 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~--~------  250 (444)
                      ..+                      ..+..  ......++..+++..+++-..++ .|.++|..++.....  .      
T Consensus       108 ~~~----------------------~~~~~--~~~~~g~~~~~~~~~~v~d~~~g-~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A          108 ETL----------------------LTLPD--AIFLNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             EEE----------------------EECTT--CSCEEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCS
T ss_pred             EEE----------------------EeCCC--ccccCcccccCCCcEEEEECCCC-eEEEEeCCCCcEeEEEECCccccc
Confidence            111                      11111  12334555555554444433465 888888765421111  0      


Q ss_pred             ---cCCCCeEEEEEecCCCeEE-EEecCCcEEEEECCC-Ccee--ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          251 ---RGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNT-WTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       251 ---~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~-~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                         ..-.....+  +|+++.|+ +-...+.|..||+.. ++..  ...........++++++|++.+ +......+..++
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~~~~~V~~~~  239 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIA  239 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEEC
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeCCCCeEEEEC
Confidence               011234555  88887775 445578999999875 3321  1111113467789999997644 544445555554


Q ss_pred             eecCCCCcCCCcCCCCccc--ccccccC-CceeEEEEC---CCCCEEEEEecC
Q 013347          324 FASKPPSLDAHLLPVDLPD--IVSLTGS-QGIEKIAWD---ASGERLAVSYKG  370 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~v~~~~~s---pdg~~l~~~~~d  370 (444)
                      .              .+..  +..+... ...++++|.   ||++.|++++..
T Consensus       240 ~--------------~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          240 P--------------DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             T--------------TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C--------------CCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            2              1111  1112222 257899998   898888777654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.65  E-value=2.6e-05  Score=71.74  Aligned_cols=262  Identities=13%  Similarity=0.008  Sum_probs=140.4

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      ++..+++++.++.|..+|..+ ++........ ......... .+ +.+++++.++.|..+|..+++.........    
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~-~~~~~~p~~-~~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~----  173 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVA-GEALSRPVV-SD-GLVLIHTSNGQLQALNEADGAVKWTVNLDM----  173 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTT-CCEEEEEECS-SCCCSCCEE-ET-TEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCC-CceEcCCEE-EC-CEEEEEcCCCeEEEEECCCCcEEEEEeCCC----
Confidence            456677788999999999987 5544333211 111111222 23 678888888999999987544332222110    


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCC--------eEEEEE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--------LSILKW  261 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~  261 (444)
                                  ....+...     ......  +..++.+..++ .+..+|..+++..........        +..+..
T Consensus       174 ------------~~~~~~~~-----~~~~~~--~~~v~~g~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~  233 (376)
T 3q7m_A          174 ------------PSLSLRGE-----SAPTTA--FGAAVVGGDNG-RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT  233 (376)
T ss_dssp             -----------------CCC-----CCCEEE--TTEEEECCTTT-EEEEEETTTCCEEEEEECCC-----------CCCC
T ss_pred             ------------CceeecCC-----CCcEEE--CCEEEEEcCCC-EEEEEECCCCcEEEEEecccCCCCcccccccccCC
Confidence                        00000000     111111  34567777777 999999998877654332211        000111


Q ss_pred             ec--CCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          262 SP--TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       262 sp--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      .|  .+..++.++.++.+..+|.++++....... .....+..  ++..++++.. ++.+..++..+             
T Consensus       234 ~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~t-------------  296 (376)
T 3q7m_A          234 TPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-GSVNDFIV--DGNRIYLVDQ-NDRVMALTIDG-------------  296 (376)
T ss_dssp             CCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-CCEEEEEE--ETTEEEEEET-TCCEEEEETTT-------------
T ss_pred             CcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-CCCCCceE--ECCEEEEEcC-CCeEEEEECCC-------------
Confidence            11  245677788899999999999887533222 22344444  3445555543 34566666422             


Q ss_pred             cccccccc--cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347          340 LPDIVSLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  417 (444)
Q Consensus       340 ~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~  417 (444)
                      +..+....  ....+.....  .+..|++++.+      |.|.++|.++++....     .......+.......+    
T Consensus       297 G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~------g~l~~~d~~tG~~~~~-----~~~~~~~~~~~~~~~~----  359 (376)
T 3q7m_A          297 GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE------GYLHWINVEDGRFVAQ-----QKVDSSGFQTEPVAAD----  359 (376)
T ss_dssp             CCEEEEECTTTTSCCCCCEE--ETTEEEEECTT------SEEEEEETTTCCEEEE-----EECCTTCBCSCCEEET----
T ss_pred             CcEEEeecccCCCcccCCEE--ECCEEEEEeCC------CeEEEEECCCCcEEEE-----EecCCCcceeCCEEEC----
Confidence            11111111  0111222222  24677788777      8999999999887622     2222222222111122    


Q ss_pred             CCceEEEEeccceeeeee
Q 013347          418 QGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       418 ~~~~l~~~~~~g~i~~~~  435 (444)
                        ..|.++..+|.|+.|+
T Consensus       360 --~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          360 --GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             --TEEEEEBTTSCEEEEE
T ss_pred             --CEEEEEeCCCEEEEEe
Confidence              2467788889998875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.64  E-value=2.9e-05  Score=65.47  Aligned_cols=188  Identities=14%  Similarity=0.102  Sum_probs=118.1

Q ss_pred             eEEEEEecCCCeEEEEECC--CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGS--TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      ...+.|+. +.++.+.+..  ..|+++|+.+ ++........  ...........+++++.... ++.+.+||.++.+. 
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~--~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~-   97 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVP--PPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP-   97 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECC--TTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE-
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCC--CCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE-
Confidence            56788887 5555555544  4899999998 5554444222  23333333344456665544 69999999984433 


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec---CC--
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GF--  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~---~~--  253 (444)
                                              +.++.... .. ..++  ++++.|+.+..++ .|.++|..+.+......   +.  
T Consensus        98 ------------------------~~ti~~~~-~G-wglt--~dg~~L~vSdgs~-~l~~iDp~t~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           98 ------------------------RARFRYPG-EG-WALT--SDDSHLYMSDGTA-VIRKLDPDTLQQVGSIKVTAGGRP  148 (243)
T ss_dssp             ------------------------EEEEECSS-CC-CEEE--ECSSCEEEECSSS-EEEEECTTTCCEEEEEECEETTEE
T ss_pred             ------------------------EEEEeCCC-Cc-eEEe--eCCCEEEEECCCC-eEEEEeCCCCeEEEEEEEccCCcc
Confidence                                    33333221 11 3333  5677777776666 99999999887654322   11  


Q ss_pred             -CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc---c-----------cCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          254 -GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---S-----------STSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       254 -~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~---~-----------~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                       ..+..+.|. +|+.++....+..|.+.|.++++....   .           ....-.+.++++|+++.|++++-.=..
T Consensus       149 ~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~  227 (243)
T 3mbr_X          149 LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPM  227 (243)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSE
T ss_pred             cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCc
Confidence             355667776 676666555678999999999987321   1           112356999999998888877554445


Q ss_pred             EEEEEe
Q 013347          319 LGSIHF  324 (444)
Q Consensus       319 ~~~~~~  324 (444)
                      ++.+++
T Consensus       228 ~~~v~~  233 (243)
T 3mbr_X          228 LYEIRL  233 (243)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.64  E-value=0.00018  Score=73.17  Aligned_cols=275  Identities=8%  Similarity=0.010  Sum_probs=163.5

Q ss_pred             CccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus        96 ~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw  170 (444)
                      .+....|+++...++|.+.+ |+.++-|..|+.... ........     -....|.++...++ +.+.++..++.|..|
T Consensus       306 ~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~l~~~~V~~i~~d~~-g~lWiGt~~~Gl~~~  382 (795)
T 4a2l_A          306 SLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRN-RFKNIRNIPYKNSLSDNVVSCIVEDKD-KNLWIGTNDGGLNLY  382 (795)
T ss_dssp             SCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGG-SSEEECCCTTSSSCSCSSEEEEEECTT-SCEEEEESSSCEEEE
T ss_pred             CCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcc-cceEEcCCCCCCCCCCCeeEEEEECCC-CCEEEEECCCCeEEE
Confidence            34455799999999998554 667777888887642 22111110     12456999988887 567777777789999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      +...... ..+....                  .... .-....|.++...++|+.|..|+.++ -|.+||..+++...+
T Consensus       383 ~~~~~~~-~~~~~~~------------------~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~-Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          383 NPITQRF-TSYTLQE------------------DESARGIGSNNIKAVYVDEKKSLVYIGTHAG-GLSILHRNSGQVENF  442 (795)
T ss_dssp             CTTTCCE-EEECCC------------------------CCSCSCEEEEEEETTTTEEEEEETTT-EEEEEETTTCCEEEE
T ss_pred             cCCCCcE-EEEecCC------------------CCcccCCCCccEEEEEEcCCCCEEEEEeCcC-ceeEEeCCCCcEEEe
Confidence            8763221 1110000                  0000 00125789999988888566677666 699999888765554


Q ss_pred             ec-----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc-------CCCceeEEEECCCCCEEEEEEcCCc
Q 013347          250 RR-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-------TSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       250 ~~-----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      ..     ....|.++...++|++.+.. . +-|.+||..+++...+..       ....|.++...++|++.+.+ ..  
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~--  517 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE--  517 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS--
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC--
Confidence            32     23578999998888765544 4 458999998876644321       23568999999999876644 32  


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeee
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  397 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~  397 (444)
                      -+..++.....  +  +...  ......+ ....|.++..+++|++.+++.        +-|..||.++++.....   .
T Consensus       518 Gl~~~~~~~~~--~--~~~~--~~~~~~l-~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~---~  579 (795)
T 4a2l_A          518 GLSVFKQEGLD--I--QKAS--ILPVSNV-TKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYN---T  579 (795)
T ss_dssp             CEEEEEEETTE--E--EECC--CSCSCGG-GGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEEC---G
T ss_pred             ceEEEeCCCCe--E--EEec--CCCCCCC-CCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeC---C
Confidence            24555432210  0  0000  0000001 112688999999998666543        34888998776543211   1


Q ss_pred             eeC-CCCCCcceeeeeCCCC
Q 013347          398 IRG-PGDNPKPVAFSFHDKF  416 (444)
Q Consensus       398 ~~~-~~~~i~~v~~spdg~~  416 (444)
                      ..+ ....|.++...++|++
T Consensus       580 ~~gl~~~~i~~i~~d~~g~l  599 (795)
T 4a2l_A          580 TNGLPNNVVYGILEDSFGRL  599 (795)
T ss_dssp             GGTCSCSCEEEEEECTTSCE
T ss_pred             CCCCchhheEEEEECCCCCE
Confidence            112 1334666666667764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.61  E-value=0.00012  Score=67.74  Aligned_cols=159  Identities=13%  Similarity=-0.013  Sum_probs=105.3

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC----Cceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW  285 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~  285 (444)
                      ..+..++|++.+..|+.+...++.|..+++...    ....+.. .......+++.+.++.| ++-...+.|.+.+++..
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~  191 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  191 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence            578999999977777766655448999998762    2333333 34567889999855545 55566789999999876


Q ss_pred             ceeccc-cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCccccccccc--CCceeEEEECCCC
Q 013347          286 TSEPWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG--SQGIEKIAWDASG  361 (444)
Q Consensus       286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg  361 (444)
                      ....+. ........++++|.+..|+.+... ...++.+.+              .+.....+..  -.....|++++++
T Consensus       192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~~~~~~l~~P~glavd~~~  257 (400)
T 3p5b_L          192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS  257 (400)
T ss_dssp             SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET--------------TSCSCEEEECSSCSCEEEEEEETTT
T ss_pred             ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC--------------CCCccEEEEECCCCceEEEEEEeCC
Confidence            654433 334557899999988777766533 245655554              2222222211  1267899999998


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +.|+.+....     +.|..+|+.....
T Consensus       258 ~~lY~aD~~~-----~~I~~~d~dG~~~  280 (400)
T 3p5b_L          258 GRLYWVDSKL-----HSISSIDVNGGNR  280 (400)
T ss_dssp             TEEEEEETTT-----TEEEEEETTSCCC
T ss_pred             CEEEEEECCC-----CEEEEEeCCCCcc
Confidence            8888876543     7899999876443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.60  E-value=9.4e-06  Score=69.06  Aligned_cols=190  Identities=13%  Similarity=0.029  Sum_probs=110.8

Q ss_pred             CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ..-...+.|+.+ ..+++++.+|.|+++|+++.+....+ ..                           .........++
T Consensus        54 ~~ftqGL~~~~~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~---------------------------~~~FgeGit~~  104 (268)
T 3nok_A           54 NAFTQGLVFHQG-HFFESTGHQGTLRQLSLESAQPVWME-RL---------------------------GNIFAEGLASD  104 (268)
T ss_dssp             TCCEEEEEEETT-EEEEEETTTTEEEECCSSCSSCSEEE-EC---------------------------TTCCEEEEEEC
T ss_pred             ccccceEEEECC-EEEEEcCCCCEEEEEECCCCcEEeEE-CC---------------------------CCcceeEEEEe
Confidence            344578888742 44455555689999999866554443 11                           22222222335


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC---Cc
Q 013347          223 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS---GF  296 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~---~~  296 (444)
                      ++.|+......+.+.+||.++.+.+........-..++  +|++.|+.+..+++|.++|..+.+... +.  ...   ..
T Consensus       105 g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~  182 (268)
T 3nok_A          105 GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVEL  182 (268)
T ss_dssp             SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccc
Confidence            55666666544599999999988776554443334444  567888777778999999999987732 22  222   23


Q ss_pred             eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-----cccC-CceeEEEECCCCCEEEEEecC
Q 013347          297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-----LTGS-QGIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~v~~~~~spdg~~l~~~~~d  370 (444)
                      ++.+.|. +|+ |++....+..+..++..+..  ....+   ....+..     .... .-.+.|+|+|+++.|++.+..
T Consensus       183 lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~--V~~~I---dl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          183 INELECA-NGV-IYANIWHSSDVLEIDPATGT--VVGVI---DASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEEEE-TTE-EEEEETTCSEEEEECTTTCB--EEEEE---ECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             ccccEEe-CCE-EEEEECCCCeEEEEeCCCCc--EEEEE---ECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            5677776 664 55566556666666642210  00000   0000000     0011 156899999998777777654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=2.2e-05  Score=73.56  Aligned_cols=153  Identities=12%  Similarity=0.134  Sum_probs=99.0

Q ss_pred             CeEEEEEee-CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347          145 DVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (444)
Q Consensus       145 ~v~~l~~s~-~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  223 (444)
                      ....|+++| +++.|+++...+.|+.+|.+... ..                         .+... ......++|+++|
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~-------------------------~~~~~-~~~P~~ia~d~~G  190 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VS-------------------------TVYSG-LSKVRTICWTHEA  190 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EE-------------------------EEECC-CSCEEEEEECTTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EE-------------------------EEecC-CCCcceEEEeCCC
Confidence            457889997 45667666655778888876221 11                         11111 2578999999999


Q ss_pred             CeEEEEeeCCC----eEEEEEcCCCCce--eeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCceeccc--cCC
Q 013347          224 RYLASASYESS----SFTIWDVAQGLGT--PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STS  294 (444)
Q Consensus       224 ~~l~~~~~d~~----~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~  294 (444)
                      ++|+.+...++    .+.+++. .+...  ...........++++| ++.++++-..++.|..++..++....+.  ...
T Consensus       191 ~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~  269 (430)
T 3tc9_A          191 DSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS  269 (430)
T ss_dssp             SEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             CEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence            97777665321    2333443 33222  2222234567788999 6766666667789999999877652222  223


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ...+.++|+|+|++|+++......+..++..
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            4578999999999888887777888887764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.59  E-value=7.7e-05  Score=75.95  Aligned_cols=278  Identities=9%  Similarity=0.015  Sum_probs=162.2

Q ss_pred             ccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-------CCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-------DSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (444)
Q Consensus        97 ~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-------~~~~~v~~l~~s~~~~~ll~~~~dg~v~i  169 (444)
                      +....|.++...++|++.+ |+.++-|..|+..+ +........       -....|.++...+++..+.++..++.|.+
T Consensus       354 l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~  431 (795)
T 4a2l_A          354 LSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSI  431 (795)
T ss_dssp             CSCSSEEEEEECTTSCEEE-EESSSCEEEECTTT-CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             CCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeE
Confidence            3445699999999988554 67777788888775 222222110       12357899988888442777777778999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      |+..+.. ...+...                     ........|.++...++|++.+. +..  -+.+||..+++....
T Consensus       432 ~d~~~~~-~~~~~~~---------------------~~~l~~~~v~~i~~d~~g~lwig-t~~--Gl~~~~~~~~~~~~~  486 (795)
T 4a2l_A          432 LHRNSGQ-VENFNQR---------------------NSQLVNENVYAILPDGEGNLWLG-TLS--ALVRFNPEQRSFTTI  486 (795)
T ss_dssp             EETTTCC-EEEECTT---------------------TSCCSCSCEEEEEECSSSCEEEE-ESS--CEEEEETTTTEEEEC
T ss_pred             EeCCCCc-EEEeecC---------------------CCCcCCCeeEEEEECCCCCEEEE-ecC--ceeEEeCCCCeEEEc
Confidence            9976332 1111100                     00011257899999888875544 444  489999887654443


Q ss_pred             ec-------CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-------cCCCceeEEEECCCCCEEEEEEcC
Q 013347          250 RR-------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       250 ~~-------~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      ..       ....|.++...++|++.+.. . +-|..||..+++. .+.       .....|.++...++|.+.+.+ ..
T Consensus       487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~  562 (795)
T 4a2l_A          487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE  562 (795)
T ss_dssp             CBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS
T ss_pred             cccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC
Confidence            22       13578999999888866544 4 4588899877655 221       123468899999999866643 32


Q ss_pred             CceEEEEEeecCCCCcCCCcCCCCcccccccccC--CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEE
Q 013347          316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  393 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~  393 (444)
                        -+..++....           .........+-  ..|.++...++|++.+++.        +-|..|+.++++.... 
T Consensus       563 --Gl~~~d~~~~-----------~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--------~Gl~~~~~~~~~~~~~-  620 (795)
T 4a2l_A          563 --GFYCFNEKDK-----------QIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--------RGISCFNPETEKFRNF-  620 (795)
T ss_dssp             --CEEEEETTTT-----------EEEEECGGGTCSCSCEEEEEECTTSCEEEEET--------TEEEEEETTTTEEEEE-
T ss_pred             --CceeECCCCC-----------cEEEeCCCCCCchhheEEEEECCCCCEEEEcC--------CceEEEcCCCCcEEEc-
Confidence              2344432110           00001111111  1688899999998777652        4588899887654311 


Q ss_pred             EeeeeeCCC-CCC--cceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          394 LIGFIRGPG-DNP--KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       394 ~~~~~~~~~-~~i--~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                        ....|-. ..+  .++...++|+      |-+|..+|-+.+-|
T Consensus       621 --~~~dGl~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~~~p  657 (795)
T 4a2l_A          621 --TESDGLQSNQFNTASYCRTSVGQ------MYFGGINGITTFRP  657 (795)
T ss_dssp             --CGGGTCSCSCEEEEEEEECTTSC------EEEEETTEEEEECG
T ss_pred             --CCcCCCccccCccCceeECCCCe------EEEecCCceEEEcH
Confidence              1111111 111  2334445554      45666777776654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.57  E-value=0.00034  Score=68.65  Aligned_cols=228  Identities=8%  Similarity=-0.005  Sum_probs=146.3

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|+.+ ..+.|+..+++.. .....+....-..+..|+|++.++.++.+.. ++.|+.++++.......+..+       
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~-~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g-------   78 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETN-NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG-------   78 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCT-TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-------
T ss_pred             EEEEE-eCCcEEEEECCCC-CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC-------
Confidence            45544 5678899999863 2222222233456889999998777777655 588888887632211111111       


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  270 (444)
                                         ...+..+++.+.++.|+.+....+.|.+.++.......+. ..-.....++++|....|+.
T Consensus        79 -------------------~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~  139 (628)
T 4a0p_A           79 -------------------LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYW  139 (628)
T ss_dssp             -------------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred             -------------------CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEE
Confidence                               1356789998877767666554459999999766554444 33466789999996555644


Q ss_pred             Ee--cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc
Q 013347          271 AK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  348 (444)
Q Consensus       271 ~~--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (444)
                      +.  ..+.|...++.......+.......+.+++++++..|+.+-.....+..+++...              ..+.+..
T Consensus       140 tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~--------------~~~v~~~  205 (628)
T 4a0p_A          140 TEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL--------------NREVIAD  205 (628)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC--------------SCEEEEE
T ss_pred             eCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC--------------ceEEeec
Confidence            43  2568888888876655444455678999999999989988877778887775321              1111221


Q ss_pred             CC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          349 SQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       349 ~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      .. ....+++..  ..|+.+....     +.|...|..+++.
T Consensus       206 ~l~~P~glav~~--~~ly~tD~~~-----~~I~~~dk~tg~~  240 (628)
T 4a0p_A          206 DLPHPFGLTQYQ--DYIYWTDWSR-----RSIERANKTSGQN  240 (628)
T ss_dssp             CCSCEEEEEEET--TEEEEEETTT-----TEEEEEETTTCCS
T ss_pred             cCCCceEEEEEC--CEEEEecCCC-----CEEEEEECCCCCc
Confidence            11 345777754  4566655432     8899999766653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.57  E-value=8.9e-05  Score=63.41  Aligned_cols=199  Identities=8%  Similarity=0.082  Sum_probs=122.0

Q ss_pred             ceEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~  178 (444)
                      .+..++|+|++..|+ +...++.|...|..  ++....+...-......+++.+++ .++++. .++.+.++++......
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCee
Confidence            489999999876555 45677777777776  555544433333568889999885 454444 4688999988754432


Q ss_pred             ceeeccccccccccccCCCCceEEEEEe-eccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC---CCceeeec---
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFL-RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIRR---  251 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~---~~~~~~~~---  251 (444)
                      ..+....                  ..+ ..........++|+|+++.|+++.... ...+|.+..   .....+..   
T Consensus       105 ~~~~~~~------------------~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~  165 (255)
T 3qqz_A          105 KILKKIK------------------IPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKA  165 (255)
T ss_dssp             EEEEEEE------------------CCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHH
T ss_pred             eeeeeec------------------cccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchh
Confidence            1111110                  001 112235689999999998888887765 556665541   11122221   


Q ss_pred             -----CCCCeEEEEEecCCCe-EEEEecCCcEEEEECCCCceec--ccc-C------CCceeEEEECCCCCEEEEEEcCC
Q 013347          252 -----GFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP--WSS-T------SGFVTGATWDPEGRMILLAFAGS  316 (444)
Q Consensus       252 -----~~~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~~--~~~-~------~~~v~~~~~sp~g~~l~~~~~~~  316 (444)
                           ....+.+++++|.... ++....++.|..+|........  +.. .      -.....|+|.++|++.+ .+.. 
T Consensus       166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~-  243 (255)
T 3qqz_A          166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEP-  243 (255)
T ss_dssp             HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETT-
T ss_pred             hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCC-
Confidence                 2246789999996554 4666677889999987553322  221 1      23578999999998555 4333 


Q ss_pred             ceEEEEE
Q 013347          317 LTLGSIH  323 (444)
Q Consensus       317 ~~~~~~~  323 (444)
                      ..++.++
T Consensus       244 n~~y~f~  250 (255)
T 3qqz_A          244 NRFYRFT  250 (255)
T ss_dssp             TEEEEEE
T ss_pred             ceEEEEE
Confidence            4444443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.56  E-value=8.6e-05  Score=68.22  Aligned_cols=224  Identities=9%  Similarity=-0.051  Sum_probs=122.9

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCC--------CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDS--------QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~--------~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      +..+++++.++.|..+|..+ ++.........        ...+.+. ...+++.+++++.++.|..+|..+++......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADD-GKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTT-CCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccC-CceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            55677777888999999887 55443332211        2233322 22334788888889999999988544322211


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCe------
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGL------  256 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v------  256 (444)
                      ..                       .   ........  .+..++.++.++ .|..+|.++++..........+      
T Consensus       131 ~~-----------------------~---~~~~~p~~--~~~~v~v~~~~g-~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          131 VA-----------------------G---EALSRPVV--SDGLVLIHTSNG-QLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             CS-----------------------S---CCCSCCEE--ETTEEEEECTTS-EEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             CC-----------------------C---ceEcCCEE--ECCEEEEEcCCC-eEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            11                       0   00111111  134677777787 9999999999876654433322      


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCc--------eeEEEECC--CCCEEEEEEcCCceEEEEEeec
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--------VTGATWDP--EGRMILLAFAGSLTLGSIHFAS  326 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--------v~~~~~sp--~g~~l~~~~~~~~~~~~~~~~~  326 (444)
                      ......  +..++.+..++.|..+|..+++..........        +..+.-.|  .+..++++. .++.+..++..+
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~t  258 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRS  258 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTT
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCC
Confidence            122222  44677788899999999999887432211100        00011111  234444443 335566665421


Q ss_pred             CCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          327 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                                   ++.+...... ....+..  ++..|++++.+      +.|..+|.++++..
T Consensus       259 -------------G~~~w~~~~~-~~~~~~~--~~~~l~~~~~~------g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          259 -------------GQIMWKRELG-SVNDFIV--DGNRIYLVDQN------DRVMALTIDGGVTL  300 (376)
T ss_dssp             -------------CCEEEEECCC-CEEEEEE--ETTEEEEEETT------CCEEEEETTTCCEE
T ss_pred             -------------CcEEeeccCC-CCCCceE--ECCEEEEEcCC------CeEEEEECCCCcEE
Confidence                         1111111111 2233333  45667777776      89999999998875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.54  E-value=6.7e-08  Score=88.90  Aligned_cols=183  Identities=9%  Similarity=-0.011  Sum_probs=85.2

Q ss_pred             CCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC
Q 013347          154 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES  233 (444)
Q Consensus       154 ~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  233 (444)
                      +++.+++++.|+.|+.||..+++.....                         ..   ..+.+..+..+++.+++++.|+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~-------------------------~~---~~~~s~p~~~~g~~~v~~s~dg   59 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTL-------------------------KE---DPVLQVPTHVEEPAFLPDPNDG   59 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEE-------------------------EC---CCSCCCC-----CCEEECTTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEe-------------------------cC---CCceecceEcCCCEEEEeCCCC
Confidence            3578888888999999998844332221                         11   1233334456777787778887


Q ss_pred             CeEEEEEcCCCCceeeecCC--CCeE-EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEE
Q 013347          234 SSFTIWDVAQGLGTPIRRGF--GGLS-ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       234 ~~i~iwd~~~~~~~~~~~~~--~~v~-~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  310 (444)
                       .|+.||.++++........  ..+. +..+. ++..+++++.++.|+.||.++++.........   ...++|++..++
T Consensus        60 -~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~  134 (369)
T 2hz6_A           60 -SLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLY  134 (369)
T ss_dssp             -CEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------EE
T ss_pred             -EEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEE
Confidence             9999999888765432211  0010 11111 34467778889999999999998743322222   234567777777


Q ss_pred             EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCC---CEEEEEecCCCccccceEEEEEcCCC
Q 013347          311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRT  387 (444)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~~~~d~~~~~d~~i~vwd~~~~  387 (444)
                      ++..    .+.+..++..          ++..+..+..+ .....+++++.   ..+++++.+      |.|+.||.+++
T Consensus       135 ~~~~----dg~v~a~d~~----------tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~d------g~v~a~d~~tG  193 (369)
T 2hz6_A          135 LGRT----EYTITMYDTK----------TRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGD------GLVVTVDSESG  193 (369)
T ss_dssp             EEEE----EEEEECCCSS----------SSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETS------CEEEEECTTTC
T ss_pred             EEec----CCEEEEEECC----------CCCEEEeEecc-cccCccccCCccccceEEEECCC------CEEEEEECCCC
Confidence            6632    2334433321          12222222111 11223334432   456667777      89999999998


Q ss_pred             CeE
Q 013347          388 PLI  390 (444)
Q Consensus       388 ~~~  390 (444)
                      +..
T Consensus       194 ~~~  196 (369)
T 2hz6_A          194 DVL  196 (369)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.53  E-value=7.3e-05  Score=66.85  Aligned_cols=158  Identities=8%  Similarity=-0.033  Sum_probs=103.7

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce--eeecCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCcee
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT--PIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~  288 (444)
                      ..+..++|++.+..|+.+...++.|..+++......  .....-.....+++.+.+..| ++-...+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            356789999866666666554459999998776422  222333556789999755555 55556789999999875543


Q ss_pred             ccc-cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEE
Q 013347          289 PWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERL  364 (444)
Q Consensus       289 ~~~-~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l  364 (444)
                      .+. ........++++|.+..|+.+... ...++.+.+.              +.....+.  +-.....++|+|+++.|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------------G~~~~~~~~~~l~~Pnglavd~~~~~l  180 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------------GSSRFIIINSEIYWPNGLTLDYEEQKL  180 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------------SCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------------CCCeEEEEECCCCCccEEEEeccCCEE
Confidence            332 444567899999987777766532 4556655531              22222221  11256899999988888


Q ss_pred             EEEecCCCccccceEEEEEcCCCC
Q 013347          365 AVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       365 ~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      ..+....     +.|..+++....
T Consensus       181 Y~aD~~~-----~~I~~~d~dG~~  199 (318)
T 3sov_A          181 YWADAKL-----NFIHKSNLDGTN  199 (318)
T ss_dssp             EEEETTT-----TEEEEEETTSCS
T ss_pred             EEEECCC-----CEEEEEcCCCCc
Confidence            8876553     889999987543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.49  E-value=0.00057  Score=68.66  Aligned_cols=227  Identities=9%  Similarity=-0.028  Sum_probs=139.6

Q ss_pred             ECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCC
Q 013347          118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (444)
Q Consensus       118 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (444)
                      +....|+..++.. .....+.  .....+..|+|.+..+.|+.+.. .+.|+.++++.......                
T Consensus       401 an~~~Ir~i~l~~-~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~----------------  461 (791)
T 3m0c_C          401 TNRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----------------  461 (791)
T ss_dssp             ECBSSEEEECTTS-CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------------
T ss_pred             ccccceeEeeccC-Ccceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc----------------
Confidence            3455677777764 2222222  33456789999987677766655 47888888763211000                


Q ss_pred             CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeEEEEe-cC
Q 013347          197 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYFFAAK-FD  274 (444)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~d  274 (444)
                           ....+... ...+..|++.+.++.|+.+....+.|.+.++.......+.. .......|+++|.+.+|+.+. ..
T Consensus       462 -----~~~vi~~~-l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          462 -----YDTVISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             -----CEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             -----eeEEEecC-CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence                 00011111 24677899998887777666554599999998665544443 345688999999866665443 23


Q ss_pred             -CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-c--C
Q 013347          275 -GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G--S  349 (444)
Q Consensus       275 -~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~  349 (444)
                       +.|...++.......+. ..-...+.|++++.+..|+.+-.....|..+++..              .....+. .  .
T Consensus       536 ~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG--------------~~~~~v~~~~~~  601 (791)
T 3m0c_C          536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--------------GNRKTILEDEKR  601 (791)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--------------CSCEEEEECTTT
T ss_pred             CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC--------------CceEEEecCCCc
Confidence             68999999876654433 33457899999998888888877777777777521              1122221 1  1


Q ss_pred             -CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          350 -QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       350 -~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                       ....+|++  ++.+|+.+....     +.|...+..+++..
T Consensus       602 l~~P~glav--~~~~lYwtD~~~-----~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          602 LAHPFSLAV--FEDKVFWTDIIN-----EAIFSANRLTGSDV  636 (791)
T ss_dssp             TSSEEEEEE--ETTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred             cCCCCEEEE--eCCEEEEEECCC-----CEEEEEeCCCCcce
Confidence             13446665  445676665543     78888887766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.48  E-value=8.7e-06  Score=80.96  Aligned_cols=205  Identities=10%  Similarity=0.097  Sum_probs=123.4

Q ss_pred             EEEEEecCCCeEEEEECCC-------------------eEEEEEccCCCCceeEEecC-CC-------CCeEEEEEeeCC
Q 013347          103 QGVSWHQHKHIVAFISGST-------------------QVIVRDYEDSGKDACILTSD-SQ-------RDVKVLEWRPNG  155 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg-------------------~v~iw~~~~~~~~~~~~~~~-~~-------~~v~~l~~s~~~  155 (444)
                      ..++++|++.++++++.++                   .|..+|..+ ++....+... |.       .....+....+|
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC-CCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            3578999999888877664                   488888887 5555544322 21       222333444576


Q ss_pred             ---CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEE----------EEeeccC-CCceEEEEEcc
Q 013347          156 ---GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV----------DFLRSQN-GEQITALSWGP  221 (444)
Q Consensus       156 ---~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~v~~~~~sp  221 (444)
                         +.++.+..+|.++++|..+++...............+.  ..++....          ..+.+.. ...-..++++|
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp  402 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP  402 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence               35666667899999999876655443322100000000  00000000          0000000 01113578888


Q ss_pred             CCCeEEEEeeC-------------------------------------------CCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          222 DGRYLASASYE-------------------------------------------SSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       222 ~~~~l~~~~~d-------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                      ++.++++...+                                           + .|..||+.+++......+...+..
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g-~l~A~D~~tG~~~W~~~~~~~~~~  481 (677)
T 1kb0_A          403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG-RLLAWDPVAQKAAWSVEHVSPWNG  481 (677)
T ss_dssp             TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE-EEEEEETTTTEEEEEEEESSSCCC
T ss_pred             CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc-EEEEEeCCCCcEEeecCCCCCCcC
Confidence            88887775432                                           4 899999999987766655555555


Q ss_pred             EEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEE
Q 013347          259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~  311 (444)
                      ..+..++..++.++.|+.+++||.++++... +. ++.....-+.|.++|+..++
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            5667788888889999999999999999843 22 33333345667788875554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.47  E-value=3.5e-05  Score=76.54  Aligned_cols=170  Identities=13%  Similarity=0.082  Sum_probs=96.7

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCC---CCeEE-EEEeeCCCeEEEEec------CCcEEEEecCCCCCcce
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ---RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGNAAS  180 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~---~~v~~-l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~  180 (444)
                      +..+++++.|+.|..+|..+ ++..........   ..+.+ ... .+ +.++++..      ++.|..+|..+++....
T Consensus       117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  193 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence            45677788899999999988 555544432211   11111 111 13 45555543      48899999987666554


Q ss_pred             eeccccccccc-----c-----ccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC----------------
Q 013347          181 VRSGAASFLGA-----L-----SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS----------------  234 (444)
Q Consensus       181 ~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~----------------  234 (444)
                      .......+...     +     .......|..    .++ ......++++|+...++.++.++.                
T Consensus       194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~----~~g-g~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKL----GGG-GTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH----CEE-CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             ecccCCCCCccccccccccccccCCccceeee----CCC-CccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            43321111000     0     0000011110    011 122345788888888888776541                


Q ss_pred             --eEEEEEcCCCCceeeecC---C-------CCeEEEEEecCCC---eEEEEecCCcEEEEECCCCcee
Q 013347          235 --SFTIWDVAQGLGTPIRRG---F-------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       235 --~i~iwd~~~~~~~~~~~~---~-------~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                        .|..+|.++++.+.....   .       .+.....+..+|+   .++.++.+|.++++|..+++..
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence              399999999987754432   1       2233333334665   6788899999999999999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.47  E-value=1.5e-05  Score=79.31  Aligned_cols=253  Identities=8%  Similarity=0.013  Sum_probs=132.1

Q ss_pred             EEEEec-CCCeEEEEECCC-----------eEEEEEccCCCCcee-EEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEE
Q 013347          104 GVSWHQ-HKHIVAFISGST-----------QVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICI  169 (444)
Q Consensus       104 ~~~~sp-~g~~la~~~~dg-----------~v~iw~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~i  169 (444)
                      .+++.+ ++++++.|+.+.           .+.+||..+..-... .....+.....++++..++..++++|.+ ..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567777 889999887542           578899887422111 1212333444567778886666666643 68999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCC----CeEEEEEcCCC
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YES----SSFTIWDVAQG  244 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~----~~i~iwd~~~~  244 (444)
                      ||..+.                       .|.....+...  ..-.+++..++++.++.|+ .++    ..+.+||..++
T Consensus       270 yd~~t~-----------------------~W~~~~~~~~~--R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          270 YDSSSD-----------------------SWIPGPDMQVA--RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EEGGGT-----------------------EEEECCCCSSC--CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCcCC-----------------------ceeECCCCCcc--ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            998722                       33333222221  1223455667999999988 342    26999999877


Q ss_pred             Cceeeec-----CCCCeEEEEEecCCCeEEEEecC---------CcEEEEECCCCceec-cccC---------CCceeEE
Q 013347          245 LGTPIRR-----GFGGLSILKWSPTGDYFFAAKFD---------GTFYLWETNTWTSEP-WSST---------SGFVTGA  300 (444)
Q Consensus       245 ~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d---------~~v~iwd~~~~~~~~-~~~~---------~~~v~~~  300 (444)
                      +...+..     ....-....+..+++.++.++.+         ..+..||..+..... ....         ...-.++
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            5443311     00000001122345555555444         356788988765421 1111         1122444


Q ss_pred             EECC-CCCEEEEEEcCC-------ceEEEEEeecCCCCcCCCcCCCCccccc--ccccCCceeEEEECCCCCEEEEEecC
Q 013347          301 TWDP-EGRMILLAFAGS-------LTLGSIHFASKPPSLDAHLLPVDLPDIV--SLTGSQGIEKIAWDASGERLAVSYKG  370 (444)
Q Consensus       301 ~~sp-~g~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~~l~~~~~d  370 (444)
                      .|.. +++.+++++...       .....+.+++....        ....+.  .+.....-.+++..|+|++++.|+.+
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~--------~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS--------PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC--------CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC--------CeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence            4543 566666654321       11123444332100        011111  11111122355677899999998864


Q ss_pred             CC-----ccccceEEEEEcCCCCe
Q 013347          371 GD-----DIYKGLIAIYDARRTPL  389 (444)
Q Consensus       371 ~~-----~~~d~~i~vwd~~~~~~  389 (444)
                      ..     ...-..+.+||..+++-
T Consensus       477 ~~~~~~~~~~~~~v~~ydp~t~~W  500 (656)
T 1k3i_A          477 RGIPFEDSTPVFTPEIYVPEQDTF  500 (656)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             cCcCcCCCCcccceEEEcCCCCce
Confidence            21     01125689999987653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.46  E-value=4e-05  Score=74.52  Aligned_cols=174  Identities=9%  Similarity=0.010  Sum_probs=88.9

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCC-C--CCeEE-EEEeeCCCeEEEEec------CCcEEEEecCCCCCcce
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDS-Q--RDVKV-LEWRPNGGRSLSVGC------KGGICIWAPSYPGNAAS  180 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~-~--~~v~~-l~~s~~~~~ll~~~~------dg~v~iw~~~~~~~~~~  180 (444)
                      +..+++++.|+.+..+|..+ ++......... .  ..+.+ ... .+ +.+++++.      ++.|..+|..+++....
T Consensus       115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            55677778899999999987 55544432111 0  01211 111 13 56666654      68999999987665544


Q ss_pred             eeccccc------ccc----cccc--C-CCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-----------C---
Q 013347          181 VRSGAAS------FLG----ALSR--G-PGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----------S---  233 (444)
Q Consensus       181 ~~~~~~~------~~~----~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------~---  233 (444)
                      .......      +..    .+..  . ....|.- .............+++.++...++.+..+           +   
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~-~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y  270 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEG-DAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW  270 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSST-TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcc-cceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence            4332110      000    0000  0 0000000 00000000011234566665566555432           1   


Q ss_pred             -CeEEEEEcCCCCceeeecCC----------CCeEEEEEecCCC---eEEEEecCCcEEEEECCCCcee
Q 013347          234 -SSFTIWDVAQGLGTPIRRGF----------GGLSILKWSPTGD---YFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       234 -~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~sp~~~---~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                       +.|..+|.++++.+......          ....-+....+|+   .++.++.+|.++++|..+++..
T Consensus       271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI  339 (571)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence             15889999998876543211          1111122334674   5677888999999999999873

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.46  E-value=3.1e-06  Score=76.22  Aligned_cols=254  Identities=9%  Similarity=0.026  Sum_probs=136.6

Q ss_pred             EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecc
Q 013347          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (444)
Q Consensus       105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~  184 (444)
                      .....+|. |.+++.++.|..|| .+ ++..... ......+.++...++ +.+++++.+  |..+|.. .+........
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~-g~~~~~~-~~~~~~~~~~~~~~~-g~l~v~t~~--l~~~d~~-g~~~~~~~~~   96 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TD-GSVKWFF-KSGEIIECRPSIGKD-GTIYFGSDK--VYAINPD-GTEKWRFDTK   96 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TT-SCEEESS-CGGGEEEECCEETTT-TEECCSSCE--EEEECCC-GGGGGGSCC-
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CC-CcEEEEE-ecCCCcccceEEecC-CcEEEecCc--EEEECCC-CcEEEEEECC
Confidence            44445555 44566788888888 54 4433222 122334466666666 455555444  7777742 2221111111


Q ss_pred             ccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEec
Q 013347          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSP  263 (444)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp  263 (444)
                                                ........+.  +..+..++.++ .|..+|.. ++..... .....+.++...+
T Consensus        97 --------------------------~~~~~~~~~~--~~~l~v~t~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~  146 (330)
T 3hxj_A           97 --------------------------KAIVSDFTIF--EDILYVTSMDG-HLYAINTD-GTEKWRFKTKKAIYATPIVSE  146 (330)
T ss_dssp             ------------------------------CCEEEE--TTEEEEECTTS-EEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred             --------------------------CCcccCceEE--CCEEEEEecCC-EEEEEcCC-CCEEEEEcCCCceeeeeEEcC
Confidence                                      0111122222  44566777776 89999988 6544333 2334456667777


Q ss_pred             CCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccc
Q 013347          264 TGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  342 (444)
Q Consensus       264 ~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      ++. +..++.++.|..||.. ++.. ........+.++...+++...+ +.   +.+..++ .             +...
T Consensus       147 ~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t---~~l~~~d-~-------------~g~~  206 (330)
T 3hxj_A          147 DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS---DKVYAIN-P-------------DGTE  206 (330)
T ss_dssp             TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES---SSEEEEC-T-------------TSCE
T ss_pred             CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee---CEEEEEC-C-------------CCcE
Confidence            776 5567778999999998 6553 3333345567788888887655 33   3344444 1             1122


Q ss_pred             ccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCce
Q 013347          343 IVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL  421 (444)
Q Consensus       343 ~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~  421 (444)
                      +....... .+.++...++|.+.+ ++.+      +.|..++.. ++...     .+......+.++.+.++|+      
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~l~v-~t~~------~gl~~~~~~-g~~~~-----~~~~~~~~~~~~~~~~~g~------  267 (330)
T 3hxj_A          207 KWNFYAGYWTVTRPAISEDGTIYV-TSLD------GHLYAINPD-GTEKW-----RFKTGKRIESSPVIGNTDT------  267 (330)
T ss_dssp             EEEECCSSCCCSCCEECTTSCEEE-EETT------TEEEEECTT-SCEEE-----EEECSSCCCSCCEECTTSC------
T ss_pred             EEEEccCCcceeceEECCCCeEEE-EcCC------CeEEEECCC-CCEeE-----EeeCCCCccccceEcCCCe------
Confidence            22222222 577888888887555 4545      678888753 44331     2222233344556655554      


Q ss_pred             EEEEeccceeeeee
Q 013347          422 LSVCWSSGFCCTYP  435 (444)
Q Consensus       422 l~~~~~~g~i~~~~  435 (444)
                      +-++..+|.|..|+
T Consensus       268 l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          268 IYFGSYDGHLYAIN  281 (330)
T ss_dssp             EEEECTTCEEEEEC
T ss_pred             EEEecCCCCEEEEC
Confidence            34455555555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.44  E-value=6.9e-05  Score=70.13  Aligned_cols=153  Identities=14%  Similarity=0.200  Sum_probs=94.5

Q ss_pred             CeEEEEEeeC--CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          145 DVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       145 ~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ....|+|+|+  ++.|+++...+.|+.++.... ..                         ..+... ......++++++
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g-~v-------------------------~~~~~~-~~~P~giavd~d  192 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ-YV-------------------------DIKTTN-IGQCADVNFTLN  192 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT-EE-------------------------EEECCC-CSCEEEEEECTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC-EE-------------------------EEeecC-CCCccEEEECCC
Confidence            4668999984  466666655588888887522 11                         111111 256899999999


Q ss_pred             CCeEEEEeeC----CCeEEEEEcCCCCce-eeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCce-eccc--cC
Q 013347          223 GRYLASASYE----SSSFTIWDVAQGLGT-PIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWS--ST  293 (444)
Q Consensus       223 ~~~l~~~~~d----~~~i~iwd~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~-~~~~--~~  293 (444)
                      |+ |+.+...    ...+...+...+... ...........++++| ++.++++-..++.|+.+|..++.. ..+.  ..
T Consensus       193 G~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~  271 (433)
T 4hw6_A          193 GD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT  271 (433)
T ss_dssp             CC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred             CC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence            99 5544432    102334443322211 1222234556788999 666556655678899999987765 2222  22


Q ss_pred             CCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          294 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       294 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ......++|+|+|+.|+++......++.+++.
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            22335799999999888887777788887753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.42  E-value=1.6e-05  Score=79.14  Aligned_cols=204  Identities=10%  Similarity=0.112  Sum_probs=119.8

Q ss_pred             EEEEecCCCeEEEEECCCe-------------------EEEEEccCCCCceeEEecC-CC-------CCeEEEEEeeCCC
Q 013347          104 GVSWHQHKHIVAFISGSTQ-------------------VIVRDYEDSGKDACILTSD-SQ-------RDVKVLEWRPNGG  156 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~-------------------v~iw~~~~~~~~~~~~~~~-~~-------~~v~~l~~s~~~~  156 (444)
                      .++++|++.++++++.++.                   |..+|..+ ++....+... |.       ..+.......+|+
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            6789999999998887764                   89999998 6665554322 21       1222223333543


Q ss_pred             ---eEEEEecCCcEEEEecCCCCCcceeecccccccccccc--------------CCCCceEEEE-EeeccCCCceEEEE
Q 013347          157 ---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSR--------------GPGTRWTLVD-FLRSQNGEQITALS  218 (444)
Q Consensus       157 ---~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~v~~~~  218 (444)
                         .++.+..+|.++++|..+++...........-...+..              -.+.+-.... ...+.  ..-..++
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg--~~w~~~a  395 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGA--HDWQPMS  395 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCS--SCSSCCE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccc--cCCCcce
Confidence               45666668999999998666543322111000000000              0000000000 00011  1123477


Q ss_pred             EccCCCeEEEEee---------------------------------------------CCCeEEEEEcCCCCceeeecCC
Q 013347          219 WGPDGRYLASASY---------------------------------------------ESSSFTIWDVAQGLGTPIRRGF  253 (444)
Q Consensus       219 ~sp~~~~l~~~~~---------------------------------------------d~~~i~iwd~~~~~~~~~~~~~  253 (444)
                      |+|+..++++...                                             +| .|..||+.+++......+.
T Consensus       396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g-~l~A~D~~tG~~~W~~~~~  474 (689)
T 1yiq_A          396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSG-KLIAWDPVKQQAAWEVPYV  474 (689)
T ss_dssp             EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEE-EEEEEETTTTEEEEEEEES
T ss_pred             ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcce-eEEEEECCCCCeEeEccCC
Confidence            8887777766532                                             24 8999999999877655554


Q ss_pred             CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc-cCCCceeEEEECCCCCEEEE
Q 013347          254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILL  311 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~-~~~~~v~~~~~sp~g~~l~~  311 (444)
                      .....-.+...+.+++.++.|+.|+.||.++++... +. +......-+.|..+|+..++
T Consensus       475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            444444566678889999999999999999999843 22 33333345777888875543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.42  E-value=8.5e-05  Score=62.64  Aligned_cols=193  Identities=15%  Similarity=0.063  Sum_probs=109.6

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ....-...+.|+++ ..+.+++.+  ..|+.+|+.+.+....+.-.                           .......
T Consensus        18 d~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---------------------------~~~fgeG   69 (243)
T 3mbr_X           18 DTTAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRAEVP---------------------------PPYFGAG   69 (243)
T ss_dssp             CTTCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEEECC---------------------------TTCCEEE
T ss_pred             CCccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEEeCC---------------------------CCcceeE
Confidence            33455678999863 444444544  58999999855443333211                           1222222


Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-cc--cCC-
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STS-  294 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-~~--~~~-  294 (444)
                      ..+.++.|+......+.+.+||.++.+.+........-..++  ++++.|+++..+++|.++|..+.+... +.  .+. 
T Consensus        70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~  147 (243)
T 3mbr_X           70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGR  147 (243)
T ss_dssp             EEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred             EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCc
Confidence            233455666655444599999999988776555444334454  567777766678899999999987632 22  221 


Q ss_pred             --CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc-cc-----ccCCceeEEEECCCCCEEEE
Q 013347          295 --GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SL-----TGSQGIEKIAWDASGERLAV  366 (444)
Q Consensus       295 --~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~v~~~~~spdg~~l~~  366 (444)
                        ..++.+.|. +|+ +++....+..+..++..+..  ....+   ....+. ..     ....-.+.|+++|+++.|++
T Consensus       148 ~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~--V~~~i---dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV  220 (243)
T 3mbr_X          148 PLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGK--VVAWI---DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV  220 (243)
T ss_dssp             ECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCB--EEEEE---ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred             ccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCC--EEEEE---ECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence              234566665 555 55555555556665542210  00000   000000 00     01115689999999988888


Q ss_pred             EecC
Q 013347          367 SYKG  370 (444)
Q Consensus       367 ~~~d  370 (444)
                      .+..
T Consensus       221 TGK~  224 (243)
T 3mbr_X          221 TGKR  224 (243)
T ss_dssp             EETT
T ss_pred             ECCC
Confidence            7754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.00011  Score=68.74  Aligned_cols=154  Identities=12%  Similarity=0.160  Sum_probs=93.6

Q ss_pred             ceEEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-C----cEEEEecCC
Q 013347          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G----GICIWAPSY  174 (444)
Q Consensus       101 ~v~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g----~v~iw~~~~  174 (444)
                      ....++++| ++..|.++...+.|+.++... +. ...+. ........++|+++++.++++... +    .+..++.. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~~-v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-EY-VSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTT-TE-EEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCC-CE-EEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence            467899998 455566555557888888875 23 23332 344568899999998767776652 2    23333322 


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCceeeecC-
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLGTPIRRG-  252 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-  252 (444)
                      ....                       ....+..  ......++++| +|.++++-...+ .|..++...+....+... 
T Consensus       214 g~~~-----------------------~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~-~V~~~~~~~~~~~~~~~~~  267 (430)
T 3tc9_A          214 SGFK-----------------------VITELTK--GQNCNGAETHPINGELYFNSWNAG-QVFRYDFTTQETTPLFTIQ  267 (430)
T ss_dssp             GTSC-----------------------SEEEEEE--CSSCCCEEECTTTCCEEEEETTTT-EEEEEETTTTEEEEEEECS
T ss_pred             Ccee-----------------------eeeeecc--CCCceEEEEeCCCCEEEEEECCCC-EEEEEECCCCcEEEEEEcC
Confidence            1100                       0011111  13567889999 555444443444 999999887654333222 


Q ss_pred             -CCCeEEEEEecCCCeE-EEEecCCcEEEEECCC
Q 013347          253 -FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNT  284 (444)
Q Consensus       253 -~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~  284 (444)
                       ......++|+|+|++| ++-...+.|..++...
T Consensus       268 ~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence             2457789999999965 4555677899987653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00047  Score=70.03  Aligned_cols=264  Identities=12%  Similarity=0.087  Sum_probs=157.6

Q ss_pred             ccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe--------cCCCCCeEEEEEeeCCCeEEEEecCCcEE
Q 013347           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--------SDSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (444)
Q Consensus        97 ~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~v~~l~~s~~~~~ll~~~~dg~v~  168 (444)
                      +....|.++...++|.+- .|+.++-|..++.... .......        .-....|.++...++ +.+.++..++.|.
T Consensus       310 l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~~~Gl~  386 (781)
T 3v9f_A          310 LSNASARYIFQDSFNNIW-IGTWGGGINFISNAPP-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTDGGGIN  386 (781)
T ss_dssp             BSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC-SCEEEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEBSSCEE
T ss_pred             CCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC-cceeeccCccccccCCCCCcceEEEEEcCC-CCEEEEeCCCcEE
Confidence            445579999999998754 4666777788887652 2211110        012356899888877 5666777677788


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP  248 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~  248 (444)
                      .|+...... ..+..                     . .......|.++...++|++. .|+.++ -+..+|..+++...
T Consensus       387 ~~~~~~~~~-~~~~~---------------------~-~~~~~~~v~~i~~d~~g~lW-igt~~~-Gl~~~~~~~~~~~~  441 (781)
T 3v9f_A          387 VFENGKRVA-IYNKE---------------------N-RELLSNSVLCSLKDSEGNLW-FGTYLG-NISYYNTRLKKFQI  441 (781)
T ss_dssp             EEETTEEEE-ECC---------------------------CCCSBEEEEEECTTSCEE-EEETTE-EEEEECSSSCEEEE
T ss_pred             EEECCCCeE-EEccC---------------------C-CCCCCcceEEEEECCCCCEE-EEeccC-CEEEEcCCCCcEEE
Confidence            888752110 00000                     0 00112578999988887654 466555 68899987765544


Q ss_pred             eec---CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc------CCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          249 IRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       249 ~~~---~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                      ...   ....|.++...+++++.+ |+. +-|..||..+++...+..      ....|.++...++|.+.+.+ ...+ +
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~G-l  517 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGG-V  517 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSC-E
T ss_pred             eccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCC-E
Confidence            332   246789998888886544 454 568999988776533321      13578999999999876644 3222 3


Q ss_pred             EEEEeecCCCCcCCCcCCCCcccccccc---c--CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLT---G--SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      ..++..              ......+.   +  ...|.++...++|++.+++. +      |.|..||.++++......
T Consensus       518 ~~~~~~--------------~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~------Glv~~~d~~~~~~~~~~~  576 (781)
T 3v9f_A          518 GIYTPD--------------MQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-E------GLVCFPSARNFDYQVFQR  576 (781)
T ss_dssp             EEECTT--------------CCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-T------EEEEESCTTTCCCEEECG
T ss_pred             EEEeCC--------------CCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-C------CceEEECCCCCcEEEccc
Confidence            333211              01111111   1  12688999999998766544 4      665889988776542211


Q ss_pred             eeeeeC-CCCCCcceeeeeCCCC
Q 013347          395 IGFIRG-PGDNPKPVAFSFHDKF  416 (444)
Q Consensus       395 ~~~~~~-~~~~i~~v~~spdg~~  416 (444)
                         -.+ ....|.++...++|++
T Consensus       577 ---~~gl~~~~i~~i~~d~~g~l  596 (781)
T 3v9f_A          577 ---KEGLPNTHIRAISEDKNGNI  596 (781)
T ss_dssp             ---GGTCSCCCCCEEEECSSSCE
T ss_pred             ---cCCCCCceEEEEEECCCCCE
Confidence               112 2345677777777764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00031  Score=71.31  Aligned_cols=275  Identities=10%  Similarity=0.037  Sum_probs=158.0

Q ss_pred             cccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE--ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCC
Q 013347           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (444)
Q Consensus        98 ~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~  175 (444)
                      ....|.++...++|.+. .|+.++-|.+|+..+. ......  .......|.++...++ +.|.++..++.+..++..+.
T Consensus       361 ~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~  437 (781)
T 3v9f_A          361 SNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSE-GNLWFGTYLGNISYYNTRLK  437 (781)
T ss_dssp             SSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-EEECC-----CCCSBEEEEEECTT-SCEEEEETTEEEEEECSSSC
T ss_pred             CCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCC-CCEEEEeccCCEEEEcCCCC
Confidence            34569999999888755 4565666788887641 111110  0123467889888777 56666766677888886522


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC---
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG---  252 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~---  252 (444)
                      . ...+..                       .......|.++...++|++.+ ++. + -|..||..+++.......   
T Consensus       438 ~-~~~~~~-----------------------~~~~~~~v~~i~~d~~g~lwi-gt~-~-Gl~~~~~~~~~~~~~~~~~~~  490 (781)
T 3v9f_A          438 K-FQIIEL-----------------------EKNELLDVRVFYEDKNKKIWI-GTH-A-GVFVIDLASKKVIHHYDTSNS  490 (781)
T ss_dssp             E-EEECCS-----------------------TTTCCCCEEEEEECTTSEEEE-EET-T-EEEEEESSSSSCCEEECTTTS
T ss_pred             c-EEEecc-----------------------CCCCCCeEEEEEECCCCCEEE-EEC-C-ceEEEeCCCCeEEecccCccc
Confidence            1 100000                       011125788998888877544 444 4 599999887765544322   


Q ss_pred             ---CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc----CCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          253 ---FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       253 ---~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                         ...|.++...++|++.+ |+.++-|..||..+++...+..    ....|.++...++|.+.+.+ . .+.+..++  
T Consensus       491 ~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~-~Glv~~~d--  565 (781)
T 3v9f_A          491 QLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-G-EGLVCFPS--  565 (781)
T ss_dssp             SCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-T-TEEEEESC--
T ss_pred             ccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-C-CCceEEEC--
Confidence               35789999998887555 4444448889988776644321    24568899999999876643 3 22212222  


Q ss_pred             cCCCCcCCCcCCCCccccccc---ccC--CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSL---TGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  400 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~---~~~--~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  400 (444)
                       ..           ......+   .+-  ..|.++...++|++.+++ .       +-|..|+.++++.....   ...|
T Consensus       566 -~~-----------~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~-------~Gl~~~~~~~~~~~~~~---~~dG  622 (781)
T 3v9f_A          566 -AR-----------NFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-N-------TGISCYITSKKCFYTYD---HSNN  622 (781)
T ss_dssp             -TT-----------TCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-S-------SCEEEEETTTTEEEEEC---GGGT
T ss_pred             -CC-----------CCcEEEccccCCCCCceEEEEEECCCCCEEEEc-C-------CceEEEECCCCceEEec---ccCC
Confidence             10           1111111   111  157889999999876654 3       33788888866543111   1111


Q ss_pred             CCCC---CcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          401 PGDN---PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       401 ~~~~---i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      -...   ..++...++|+      |-+|..+|.+.|-|-
T Consensus       623 l~~~~f~~~~~~~~~~G~------l~~g~~~Gl~~f~p~  655 (781)
T 3v9f_A          623 IPQGSFISGCVTKDHNGL------IYFGSINGLCFFNPD  655 (781)
T ss_dssp             CCSSCEEEEEEEECTTSC------EEEEETTEEEEECSC
T ss_pred             ccccccccCceEECCCCE------EEEECCCceEEEChh
Confidence            1111   12334444554      456777787766553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.40  E-value=0.001  Score=59.66  Aligned_cols=274  Identities=15%  Similarity=0.175  Sum_probs=141.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec---CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS---DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~---~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .+.++.|.+++..+++ +..|.|  |...+.++.-.....   .....+.++.|.+  +.+++++..+.|..  ....+.
T Consensus        37 ~~~~v~~~~~~~~~~~-G~~g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~--S~DgG~  109 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLV-GVNATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH--TTDGGQ  109 (327)
T ss_dssp             CEEEEEESSSSCEEEE-ETTTEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE--ESSTTS
T ss_pred             cEEEEEECCCCcEEEE-cCCCeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE--ECCCCC
Confidence            5889999888887774 466764  333333333222211   1244688999875  45666666664433  322222


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-ee-ecCCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-PI-RRGFGG  255 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-~~-~~~~~~  255 (444)
                                           .|........+ ...+..+.+.++++.++.+ .++ .|.. ....++.- .. ......
T Consensus       110 ---------------------tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~g-~v~~-S~DgG~tW~~~~~~~~~~  164 (327)
T 2xbg_A          110 ---------------------SWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NVG-AIYR-TKDSGKNWQALVQEAIGV  164 (327)
T ss_dssp             ---------------------SCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TTC-CEEE-ESSTTSSEEEEECSCCCC
T ss_pred             ---------------------CceECccccCC-CCCeEEEEEECCCCEEEEe-CCc-cEEE-EcCCCCCCEEeecCCCcc
Confidence                                 22222111111 1346777777777665554 454 4322 12223222 22 223457


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEE-EECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYL-WETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  333 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~i-wd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      +..+++.|++++++.+. ++.+.. .|-.......+ ......+..+.+.++++.++++.  ++.++.... +.     +
T Consensus       165 ~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~--~G~~~~s~~-D~-----G  235 (327)
T 2xbg_A          165 MRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN--GGKIAFSDP-DN-----S  235 (327)
T ss_dssp             EEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET--TTEEEEEET-TE-----E
T ss_pred             eEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC--CceEEEecC-CC-----C
Confidence            88999999988777665 444443 34211111221 23456788999999998766542  233322110 00     0


Q ss_pred             CcCCCCcccccc--cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee
Q 013347          334 HLLPVDLPDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  411 (444)
Q Consensus       334 ~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s  411 (444)
                      ..|    ..+..  +.....+.++++.+++++++++. +      +.| ++..+.++.-  ..+.........+.++.|.
T Consensus       236 ~tW----~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~------g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          236 ENW----GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-A------GAL-LCSQDGGQTW--QQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             EEE----CCCBCTTSSCCSCEEEEEESSSSCEEEEES-T------TCE-EEESSTTSSC--EECGGGTTSSSCCCEEEEE
T ss_pred             Cee----EeccCCcccCCcceEEEEecCCCEEEEEeC-C------CeE-EEeCCCCccc--EEcCccCCCCCCeEEEEEE
Confidence            001    11110  11122578899999888777765 3      555 4445544332  1111111223567888887


Q ss_pred             eCCCCCCCceEEEEeccceeeeee
Q 013347          412 FHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       412 pdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ++++     +++++ ++|.|..+.
T Consensus       302 ~~~~-----~~~~G-~~G~i~~~~  319 (327)
T 2xbg_A          302 SPDQ-----GFILG-QKGILLRYV  319 (327)
T ss_dssp             ETTE-----EEEEC-STTEEEEEC
T ss_pred             CCCc-----eEEEc-CCceEEEEc
Confidence            6554     35454 678776554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.38  E-value=0.00058  Score=68.62  Aligned_cols=159  Identities=12%  Similarity=-0.011  Sum_probs=105.0

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC----Cceeeec-CCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCC
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQG----LGTPIRR-GFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTW  285 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~----~~~~~~~-~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~  285 (444)
                      ..+..++|++....|+.+....+.|+.+++...    ....+.. .......|++.+.++.| ++-...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            577899999866666666554448999998753    2233333 34567789999877655 55556789999999876


Q ss_pred             ceeccc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCC
Q 013347          286 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG  361 (444)
Q Consensus       286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg  361 (444)
                      ....+. ........|+++|.+.+|+.+.... ..+..+.+              .+.....+....  ....|++++.+
T Consensus       504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~--------------dG~~~~~lv~~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS  569 (791)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred             eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec--------------CCCceEEEEeCCCCCceEEEEecCC
Confidence            654443 3445689999999877777765443 55655554              222222222222  67899999988


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      ..|+.+....     +.|..+++.....
T Consensus       570 ~~LYwaD~~~-----~~I~~~d~dG~~~  592 (791)
T 3m0c_C          570 GRLYWVDSKL-----HSISSIDVNGGNR  592 (791)
T ss_dssp             TEEEEEETTT-----TEEEEEETTSCSC
T ss_pred             CeEEEEeCCC-----CcEEEEecCCCce
Confidence            8888876543     7899999976544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.38  E-value=0.00036  Score=59.63  Aligned_cols=206  Identities=13%  Similarity=0.139  Sum_probs=119.9

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (444)
                      +-...+..++|+|+++.|+++.. ++.|...|.. .+....+.                       +.+  ......+++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------------l~g--~~D~EGIa~   77 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------------LDF--VKDLETIEY   77 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------------CSS--CSSEEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------------cCC--CCChHHeEE
Confidence            55567999999998777877655 4777777765 22211111                       122  246788999


Q ss_pred             ccCCCeEEEEeeCCCeEEEEEcCCCCce---eee-------cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCC----C
Q 013347          220 GPDGRYLASASYESSSFTIWDVAQGLGT---PIR-------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT----W  285 (444)
Q Consensus       220 sp~~~~l~~~~~d~~~i~iwd~~~~~~~---~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~----~  285 (444)
                      .+++.++++.-.++ .+.++++......   ...       ..+.....++|+|+++.|+++.+.....+|..+.    .
T Consensus        78 ~~~g~~~vs~E~~~-~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~  156 (255)
T 3qqz_A           78 IGDNQFVISDERDY-AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN  156 (255)
T ss_dssp             CSTTEEEEEETTTT-EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS
T ss_pred             eCCCEEEEEECCCC-cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC
Confidence            98887666544454 8999988665421   111       1234568999999998887776655555555431    1


Q ss_pred             ceecc-------ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEE
Q 013347          286 TSEPW-------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAW  357 (444)
Q Consensus       286 ~~~~~-------~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  357 (444)
                      .....       ..+...+.+++++|....+++-++.+..+..++.....    ...+.+... ...+. .......|+|
T Consensus       157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~----~~~~~L~~g-~~~l~~~~~qpEGia~  231 (255)
T 3qqz_A          157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV----IGEMSLTKG-SRGLSHNIKQAEGVAM  231 (255)
T ss_dssp             CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE----EEEEECSTT-GGGCSSCCCSEEEEEE
T ss_pred             ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE----EEEEEcCCc-cCCcccccCCCCeeEE
Confidence            11111       11334578999999877777777776666665532110    000000000 00000 0114678999


Q ss_pred             CCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          358 DASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       358 spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      .++|++. ..++.      +.+++|...
T Consensus       232 d~~G~ly-IvsE~------n~~y~f~~~  252 (255)
T 3qqz_A          232 DASGNIY-IVSEP------NRFYRFTPQ  252 (255)
T ss_dssp             CTTCCEE-EEETT------TEEEEEEC-
T ss_pred             CCCCCEE-EEcCC------ceEEEEEec
Confidence            9999854 44766      777777544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.37  E-value=6.4e-05  Score=75.85  Aligned_cols=111  Identities=10%  Similarity=0.089  Sum_probs=73.5

Q ss_pred             ceEEEEEc-cCCCeEEEEeeCCC----eEEEEEcCCC-CceeeecCCCCeEEEEEecCCCeEEEEecC-----CcEEEEE
Q 013347          213 QITALSWG-PDGRYLASASYESS----SFTIWDVAQG-LGTPIRRGFGGLSILKWSPTGDYFFAAKFD-----GTFYLWE  281 (444)
Q Consensus       213 ~v~~~~~s-p~~~~l~~~~~d~~----~i~iwd~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd  281 (444)
                      .+...+|| |||++|+.+...+|    +|+++|+.++ +..... .......++|+|||+.|+....+     ..|++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57889999 99999987765322    4999999988 632110 01113468899999988776654     2688889


Q ss_pred             CCCCcee--cc-c-cCCCceeEEEECCCCCEEEEEEcCC--ceEEEEEe
Q 013347          282 TNTWTSE--PW-S-STSGFVTGATWDPEGRMILLAFAGS--LTLGSIHF  324 (444)
Q Consensus       282 ~~~~~~~--~~-~-~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~~  324 (444)
                      +.+++..  .+ . ........+.|+|||++|+......  ..++.+++
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~  302 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL  302 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence            8876532  22 1 2334567889999999988765432  33444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.35  E-value=0.00011  Score=68.77  Aligned_cols=152  Identities=14%  Similarity=0.156  Sum_probs=88.6

Q ss_pred             ceEEEEEecC--CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC-----cEEEEecC
Q 013347          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG-----GICIWAPS  173 (444)
Q Consensus       101 ~v~~~~~sp~--g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg-----~v~iw~~~  173 (444)
                      ....++|+|+  +..|..+...+.|+.++..+ +.....  .........++|+++|+ |+++...+     .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-g~v~~~--~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-QYVDIK--TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-TEEEEE--CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCC-CEEEEe--ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            3678999995  34454444448889998865 333322  23445689999999977 66655422     12222221


Q ss_pred             CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc-CCCeEEEEeeCCCeEEEEEcCCCCc-eeeec
Q 013347          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRYLASASYESSSFTIWDVAQGLG-TPIRR  251 (444)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~~i~iwd~~~~~~-~~~~~  251 (444)
                       ....                       ....+..  ......++++| +|.+.++-..++ .|+.+|..++.. ..+..
T Consensus       216 -~~~~-----------------------~~~~~~~--~~~P~giavd~~~G~lyv~d~~~~-~V~~~d~~~g~~~~~~~~  268 (433)
T 4hw6_A          216 -SGFT-----------------------ERLSLCN--ARGAKTCAVHPQNGKIYYTRYHHA-MISSYDPATGTLTEEEVM  268 (433)
T ss_dssp             -GTTC-----------------------CEEEEEE--CSSBCCCEECTTTCCEEECBTTCS-EEEEECTTTCCEEEEEEE
T ss_pred             -CCee-----------------------ccccccc--cCCCCEEEEeCCCCeEEEEECCCC-EEEEEECCCCeEEEEEec
Confidence             0000                       0001111  14567789999 555444433444 899999886755 23322


Q ss_pred             C--CCCeEEEEEecCCCeE-EEEecCCcEEEEECC
Q 013347          252 G--FGGLSILKWSPTGDYF-FAAKFDGTFYLWETN  283 (444)
Q Consensus       252 ~--~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~  283 (444)
                      .  ......++|+|++++| ++-...+.|+.++..
T Consensus       269 ~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          269 MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            2  2233469999999966 444556789998865

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.31  E-value=1.1e-05  Score=80.34  Aligned_cols=244  Identities=9%  Similarity=-0.018  Sum_probs=134.8

Q ss_pred             CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCC---CCcceeecccccccccccc
Q 013347          119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP---GNAASVRSGAASFLGALSR  194 (444)
Q Consensus       119 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~  194 (444)
                      ..+.|++.++.. .....++  .....+..|+|.+.++.|+.+.. .+.|+.+++...   .....+             
T Consensus       384 ~~~~I~~id~~~-~~~~~~~--~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~-------------  447 (699)
T 1n7d_A          384 NRHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------------  447 (699)
T ss_dssp             CTTC-CEECTTS-CCEECCS--CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB-------------
T ss_pred             CccceEEEeCCC-Ccceeee--ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE-------------
Confidence            445777777764 2222221  22345678999987677766654 478888888631   011000             


Q ss_pred             CCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeEEEEe-
Q 013347          195 GPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAK-  272 (444)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-  272 (444)
                                 +... ......+++.+.+..|+.+....+.|.++++.......+... ......++++|.+.+|+.+. 
T Consensus       448 -----------i~~~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~  515 (699)
T 1n7d_A          448 -----------ISRD-IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW  515 (699)
T ss_dssp             -----------CCSC-C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred             -----------EeCC-CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence                       0000 124566888865555555543333899999876654444332 34567889999765554433 


Q ss_pred             cC-CcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC-
Q 013347          273 FD-GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-  349 (444)
Q Consensus       273 ~d-~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  349 (444)
                      .. +.|..+++.......+. ......+.|+|+|++..|+++-.....+..+++...           ....+...... 
T Consensus       516 ~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-----------~~~~~~~~~~~~  584 (699)
T 1n7d_A          516 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----------NRKTILEDEKRL  584 (699)
T ss_dssp             SSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-----------CCEEECCCSSSC
T ss_pred             CCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-----------ceEEEEecCCcC
Confidence            22 67888887654433222 233457889999998888888777777777765211           00111110011 


Q ss_pred             CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          350 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       350 ~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      .....|++..  ..|+.+...+     +.|..++..+++..     ..+......++.+++.+.
T Consensus       585 ~~P~glavd~--~~lywtd~~~-----~~V~~~d~~~G~~~-----~~i~~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          585 AHPFSLAVFE--DKVFWTDIIN-----EAIFSANRLTGSDV-----NLLAENLLSPEDMVLFHQ  636 (699)
T ss_dssp             SSCCCCEEET--TEEEEECSTT-----TCEEEEETTTEEEE-----ECCCTTCSSCCCCCBCSS
T ss_pred             CCceEeEEEC--CEEEEEeCCC-----CeEEEEEccCCCce-----EEeecCCCCCcEEEEeCc
Confidence            1234555543  3555554442     78999998776554     223322333555655433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.00045  Score=64.93  Aligned_cols=158  Identities=11%  Similarity=0.082  Sum_probs=96.2

Q ss_pred             CeEEEEEee-CCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE---
Q 013347          145 DVKVLEWRP-NGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW---  219 (444)
Q Consensus       145 ~v~~l~~s~-~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---  219 (444)
                      ....|+|+| +.+.|+++... +.|++.|.+.. ....+...                      ..........++|   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~----------------------~~~~~~~p~~ia~~~~  196 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNI----------------------NTIPTNRIRSIAFNKK  196 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECC----------------------TTSSCSBEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEcc----------------------CccccCCCcEEEEeec
Confidence            467899998 45666666654 66777777622 11111110                      0001135899999   


Q ss_pred             ----ccCCCeEEEEeeCCC------eEEEEEcCC-CCce-----eeecCCCCeEEEEEecCCCeE-EEEecCCcEEEEEC
Q 013347          220 ----GPDGRYLASASYESS------SFTIWDVAQ-GLGT-----PIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWET  282 (444)
Q Consensus       220 ----sp~~~~l~~~~~d~~------~i~iwd~~~-~~~~-----~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~  282 (444)
                          +++|+.|+++...++      .|.+++... +...     ...........++++|++..| ++-..++.|..+|+
T Consensus       197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                999997777665431      366665443 1221     111112344578899955554 56667788999998


Q ss_pred             C-------CCce------------ecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          283 N-------TWTS------------EPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       283 ~-------~~~~------------~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      .       ++..            ..+  .+.......++|+|+|+.|+++......++.+.+.
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            7       5543            011  12234568999999999888787777788887653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.0013  Score=61.95  Aligned_cols=161  Identities=14%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             ceEEEEEecC-CCeEEEE-ECCCeEEEEEccCCCCceeEEecC--CCCCeEEEEE-------eeCCCeEEEEecCC-c--
Q 013347          101 DLQGVSWHQH-KHIVAFI-SGSTQVIVRDYEDSGKDACILTSD--SQRDVKVLEW-------RPNGGRSLSVGCKG-G--  166 (444)
Q Consensus       101 ~v~~~~~sp~-g~~la~~-~~dg~v~iw~~~~~~~~~~~~~~~--~~~~v~~l~~-------s~~~~~ll~~~~dg-~--  166 (444)
                      ....|+|+|. ...|..+ ...+.|++.|... +....+...+  .......++|       +++++.|+++...+ .  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            4678999993 4444444 3446677777775 3333333221  1235899999       99987677776543 2  


Q ss_pred             ----EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347          167 ----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       167 ----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~  242 (444)
                          |.+++....+....  ..              .+..+..+     .....++++|++..|+.+....+.|..+|+.
T Consensus       219 ~~~~V~~i~r~~~G~~~~--~~--------------~~~~v~~~-----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDD--RS--------------DIQLIAAY-----KQCNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             GEEEEEEEECCTTSCCST--TS--------------CEEEEEEE-----SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             cCceEEEEecCCCCceee--cc--------------cceeeccC-----CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence                44554332111100  00              00111111     2446788999666666665554489999998


Q ss_pred             -------CCCc-----------e-eee--cCCCCeEEEEEecCCCeE-EEEecCCcEEEEECC
Q 013347          243 -------QGLG-----------T-PIR--RGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETN  283 (444)
Q Consensus       243 -------~~~~-----------~-~~~--~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~  283 (444)
                             ++..           . .+.  ........++|+|+|++| ++-...+.|+.++..
T Consensus       278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                   5543           1 222  223456799999999965 444556788886553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.28  E-value=0.00054  Score=61.68  Aligned_cols=201  Identities=14%  Similarity=0.146  Sum_probs=115.4

Q ss_pred             CceEEEEEcc--CCC-eEEEEeeC--CCeEEEEEcCCCCce-e-ee--cC--CCCeEEEEEecCCCeEEEEec-------
Q 013347          212 EQITALSWGP--DGR-YLASASYE--SSSFTIWDVAQGLGT-P-IR--RG--FGGLSILKWSPTGDYFFAAKF-------  273 (444)
Q Consensus       212 ~~v~~~~~sp--~~~-~l~~~~~d--~~~i~iwd~~~~~~~-~-~~--~~--~~~v~~~~~sp~~~~l~~~~~-------  273 (444)
                      -....+.+.+  ++. +|+.+...  +.+|.+|++...... . +.  .+  -.....+++.++|++.++...       
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            3566777655  453 34444322  238888887764322 2 21  11  245789999999987776541       


Q ss_pred             ----------CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccc
Q 013347          274 ----------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  343 (444)
Q Consensus       274 ----------d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                                .|.|..+|.  ++...+...-...+.++|+||++.++++......++.+++...     +     .....
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-----g-----~l~~~  259 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-----W-----TLTPL  259 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-----S-----CEEEE
T ss_pred             ccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-----C-----cEecC
Confidence                      244555554  3443333334557999999999999988777777887776421     1     11111


Q ss_pred             cccccCCceeEEEECC-CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC-C-CCCCcceeeeeCCCCCCCc
Q 013347          344 VSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-P-GDNPKPVAFSFHDKFKQGP  420 (444)
Q Consensus       344 ~~~~~~~~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~-~~~i~~v~~spdg~~~~~~  420 (444)
                      +.+........+++.+ +|++.+++..++     +.|..|+.....   ...+..++. + ........|..||+...++
T Consensus       260 ~~~~~~g~PDGi~vD~e~G~lwva~~~~g-----~~v~~~~P~~~~---~s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~  331 (355)
T 3sre_A          260 RVLSFDTLVDNISVDPVTGDLWVGCHPNG-----MRIFFYDAENPP---GSEVLRIQDILSEEPKVTVVYAENGTVLQGS  331 (355)
T ss_dssp             EEEECSSEEEEEEECTTTCCEEEEEESCH-----HHHHSCCTTSCC---CEEEEEEECTTSSSCEEEEEEEECSSSCCSE
T ss_pred             EEEeCCCCCceEEEeCCCCcEEEEecCCc-----eEEEEECCCCCC---CCEEEEEEccCCCCcEEEEEEEcCCCEEEee
Confidence            2222122567899999 599887665442     455556654211   112222331 1 1222233577799987777


Q ss_pred             eEEEEeccceeee
Q 013347          421 LLSVCWSSGFCCT  433 (444)
Q Consensus       421 ~l~~~~~~g~i~~  433 (444)
                      ..++-+ +|++.+
T Consensus       332 T~a~~~-~g~L~i  343 (355)
T 3sre_A          332 TVAAVY-KGKLLI  343 (355)
T ss_dssp             EEEEEE-TTEEEE
T ss_pred             EEEEEE-CCEEEE
Confidence            766654 577664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.28  E-value=0.0013  Score=59.77  Aligned_cols=239  Identities=11%  Similarity=0.086  Sum_probs=123.6

Q ss_pred             CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-
Q 013347          144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-  222 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-  222 (444)
                      ...+.|+|.|+| .++++..+|.|++++.+  +. ..+...                   . ...........++++|+ 
T Consensus        29 ~~P~~ia~~pdG-~l~V~e~~g~I~~~d~~--G~-~~~~~~-------------------~-v~~~g~~g~~gia~~pdf   84 (354)
T 3a9g_A           29 EVPWSIAPLGGG-RYLVTERPGRLVLISPS--GK-KLVASF-------------------D-VANVGEAGLLGLALHPEF   84 (354)
T ss_dssp             SCEEEEEEEETT-EEEEEETTTEEEEECSS--CE-EEEEEC-------------------C-CCCSTTCSEEEEEECTTT
T ss_pred             CCCeEEEEcCCC-eEEEEeCCCEEEEEeCC--Cc-eEeecc-------------------c-eeecCCCceeeEEeCCCC
Confidence            456889999995 57777777999888632  21 111110                   0 00111256889999997 


Q ss_pred             --CCeEEEEee----C----CCeEEEEEcCCCC-----ceeee---c--CCCCeEEEEEecCCCeEEEEec---------
Q 013347          223 --GRYLASASY----E----SSSFTIWDVAQGL-----GTPIR---R--GFGGLSILKWSPTGDYFFAAKF---------  273 (444)
Q Consensus       223 --~~~l~~~~~----d----~~~i~iwd~~~~~-----~~~~~---~--~~~~v~~~~~sp~~~~l~~~~~---------  273 (444)
                        +..|+.+..    +    + .|..|+.....     ...+.   .  .......++|.|||.+.++.+.         
T Consensus        85 ~~~g~lyv~~~~~~~~~~~~~-~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d  163 (354)
T 3a9g_A           85 PKKSWVYLYASYFAEGGHIRN-RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQD  163 (354)
T ss_dssp             TTSCEEEEEEEEECGGGCEEE-EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred             CcCCEEEEEEeccCCCCCcce-EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccC
Confidence              455554433    2    4 68888876541     11111   1  1123467999999986666432         


Q ss_pred             ----CCcEEEEECCCC--------ceecc-ccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecCC---CC-cCCC-
Q 013347          274 ----DGTFYLWETNTW--------TSEPW-SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKP---PS-LDAH-  334 (444)
Q Consensus       274 ----d~~v~iwd~~~~--------~~~~~-~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~-  334 (444)
                          .|+|.-++....        ....+ .++ .....++|+| +|++.++-...+.......+....   +. .... 
T Consensus       164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~  242 (354)
T 3a9g_A          164 LSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKA  242 (354)
T ss_dssp             TTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCC
T ss_pred             CCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCC
Confidence                245666666532        11111 123 2357899999 666555432222111111111100   00 0000 


Q ss_pred             cCCCCccccccc-ccCCceeEEEEC-------CCCCEEEEEecCCCccccceEEEEEcCCC-CeEEEEEeeeeeCCCCCC
Q 013347          335 LLPVDLPDIVSL-TGSQGIEKIAWD-------ASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNP  405 (444)
Q Consensus       335 ~~~~~~~~~~~~-~~~~~v~~~~~s-------pdg~~l~~~~~d~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~i  405 (444)
                      ...-...++..+ ..+.....++|.       .+|+++++....      +.|...+++.. +...  ....+.+....+
T Consensus       243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~------~~v~~~~~~~~g~~~~--~~~~~~~~~~rp  314 (354)
T 3a9g_A          243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG------SMLAAVNFGDNMEVRK--ISTFFKNVFGRL  314 (354)
T ss_dssp             CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT------TEEEEEEECGGGCEEE--EEEECTTTSCCE
T ss_pred             CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC------CEEEEEEECCCCcccc--eeeeccCCCCCe
Confidence            000001122223 233467888884       567666655444      78888888753 3321  111233334568


Q ss_pred             cceeeeeCCCC
Q 013347          406 KPVAFSFHDKF  416 (444)
Q Consensus       406 ~~v~~spdg~~  416 (444)
                      ..+++.|||.+
T Consensus       315 ~~v~~~pDG~l  325 (354)
T 3a9g_A          315 RDVVIDDDGGI  325 (354)
T ss_dssp             EEEEECTTSCE
T ss_pred             eEEEECCCCcE
Confidence            89999999864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.24  E-value=0.0017  Score=63.60  Aligned_cols=229  Identities=10%  Similarity=0.008  Sum_probs=136.7

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|+.+ ....|+..++.......... ...-..+..|+|++.++.++.+.. .+.|..++++.......+          
T Consensus        11 ~~~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v----------   78 (619)
T 3s94_A           11 LLLYA-NRRDLRLVDATNGKENATIV-VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV----------   78 (619)
T ss_dssp             CEEEE-CSSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE----------
T ss_pred             eEEEe-ccccEEEEeCCCCcceEEEE-EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE----------
Confidence            34443 56778888887521122222 234456789999998777777655 477888887632111111          


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeEEEEEecCCCeEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~  270 (444)
                                    +... -.....+++.+.++.|+.+....+.|.+.++.......+. ..-.....++++|.+.+|+.
T Consensus        79 --------------~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~  143 (619)
T 3s94_A           79 --------------VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW  143 (619)
T ss_dssp             --------------ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred             --------------EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEE
Confidence                          1111 1468899999977767666654459999999876554444 33456788999997665644


Q ss_pred             Eec--CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          271 AKF--DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       271 ~~~--d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      +..  .+.|...++.......+. ..-...+.+++++++..|+.+-.....++.+++..              ...+.+.
T Consensus       144 tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--------------~~~~~~~  209 (619)
T 3s94_A          144 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--------------TNRQAVV  209 (619)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--------------CEEC---
T ss_pred             eccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--------------CccEEEE
Confidence            442  467877888765543332 34456799999999888888877666676666421              1111111


Q ss_pred             c-C-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          348 G-S-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       348 ~-~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      . . .....+++..+  .|+.+....     +.|...|..+++.
T Consensus       210 ~~~~~~P~gi~~~~~--~ly~td~~~-----~~V~~~d~~tg~~  246 (619)
T 3s94_A          210 KGSLPHPFALTLFED--ILYWTDWST-----HSILACNKYTGEG  246 (619)
T ss_dssp             ------CCCEEESSS--EEEEECTTT-----CSEEEEESSSCCC
T ss_pred             eCCCCCceEEEEeCC--EEEEecCCC-----CEEEEEECCCCcc
Confidence            1 1 13356777655  566665442     7899999877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.21  E-value=0.00062  Score=61.83  Aligned_cols=258  Identities=12%  Similarity=0.057  Sum_probs=129.4

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC--
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--  222 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--  222 (444)
                      ..+.|+|.|+|+.++++...|.|++++.+ ......+...                   ..+..........++++|+  
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~-------------------~~v~~~g~~g~~gia~~pdf~   78 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGV-------------------PDVWAHGQGGLLDVVLAPDFA   78 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSC-------------------CCCCCSTTCSEEEEEECTTHH
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCC-------------------cccccCCCCCceeEEECCCCC
Confidence            46889999996647777778999888743 1110001100                   0000111246789999996  


Q ss_pred             -CCeEEEEeeC-------CCeEEEEEcCCCC-----ceeee-c------CCCCeEEEEEecCCCeEEEEec---------
Q 013347          223 -GRYLASASYE-------SSSFTIWDVAQGL-----GTPIR-R------GFGGLSILKWSPTGDYFFAAKF---------  273 (444)
Q Consensus       223 -~~~l~~~~~d-------~~~i~iwd~~~~~-----~~~~~-~------~~~~v~~~~~sp~~~~l~~~~~---------  273 (444)
                       +..|+.+...       ...|..|++....     ...+. .      .......++|.|||.+.++.+.         
T Consensus        79 ~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~  158 (353)
T 2g8s_A           79 QSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQD  158 (353)
T ss_dssp             HHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGC
T ss_pred             CCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCC
Confidence             4455444321       1157777765431     11111 1      1122457999999966565433         


Q ss_pred             ----CCcEEEEECCCC-------------ceeccccCCCceeEEEECC-CCCEEEEEEcCCceEEEEEeecC-C--CC--
Q 013347          274 ----DGTFYLWETNTW-------------TSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASK-P--PS--  330 (444)
Q Consensus       274 ----d~~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~~~~~-~--~~--  330 (444)
                          .|+|.-+|....             ....+...-.....++|+| +|++.++-...+....+..+... .  +.  
T Consensus       159 ~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~  238 (353)
T 2g8s_A          159 LDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLA  238 (353)
T ss_dssp             TTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTB
T ss_pred             CCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCc
Confidence                246777777643             1111111123468899999 56655543322222222222110 0  00  


Q ss_pred             -----cCCC-cC-------CCCcccccccccCCceeEEEECC-------CCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          331 -----LDAH-LL-------PVDLPDIVSLTGSQGIEKIAWDA-------SGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       331 -----~~~~-~~-------~~~~~~~~~~~~~~~v~~~~~sp-------dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                           .... +.       .....++..+..+.....++|..       +|+++++....      +.|...+++.++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~------~~v~~~~~~~~~~~  312 (353)
T 2g8s_A          239 TWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKD------KDVIVMSVNGDKVT  312 (353)
T ss_dssp             CSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTT------TEEEEEEEETTEEE
T ss_pred             cCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccC------CEEEEEEeCCCeEe
Confidence                 0000 00       00011222233344667788864       46666554444      78888888765433


Q ss_pred             EEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeee
Q 013347          391 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  434 (444)
Q Consensus       391 ~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~  434 (444)
                      ...  ..+......+..+++.|||.+    +++--..+|+|+..
T Consensus       313 ~~~--~~~~~~~~rp~~v~~~pdG~l----yv~td~~~g~I~ri  350 (353)
T 2g8s_A          313 EDG--RILTDRGQRIRDVRTGPDGYL----YVLTDESSGELLKV  350 (353)
T ss_dssp             EEE--EESGGGCCCEEEEEECTTSCE----EEEECSTTEEEEEE
T ss_pred             eeE--EcccCCCCceeEEEECCCCcE----EEEEeCCCCEEEEE
Confidence            211  122233457889999999874    22222356777543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.18  E-value=1.2e-05  Score=80.21  Aligned_cols=196  Identities=12%  Similarity=-0.021  Sum_probs=111.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCC----CCceeee-cCCCCeEEEEEecCCC-eEEEEecCCcEEEEECCCC
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIR-RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~----~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~v~iwd~~~~  285 (444)
                      ..+..++|++.+..|+.+...++.|+.+++..    .....+. ........+++.+.+. ++++-...+.|.++++.+.
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            45678999987777777765545899999875    2222222 1223455688886544 4455456788999999876


Q ss_pred             ceeccc-cCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCC
Q 013347          286 TSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASG  361 (444)
Q Consensus       286 ~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg  361 (444)
                      ....+. ........++++|.+.+|+.+.... ..++.+.+              .+.....+.  .......|+|+|++
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~--------------dG~~~~~l~~~~l~~PnGlavd~~~  551 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS  551 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS--------------SSCCCCEESCSSCSSCCCEEECTTT
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC--------------CCCCeeEEEeCCCCCccEEEEeccC
Confidence            554433 2234568899999877776654322 34444332              111111221  11246789999988


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +.|+.+....     +.|.++++........  + ...+.......+++..+      .++.+.|..++|..++
T Consensus       552 ~~LY~aD~~~-----~~I~~~d~dG~~~~~~--~-~~~~~~~~P~glavd~~------~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          552 GRLYWVDSKL-----HSISSIDVNGGNRKTI--L-EDEKRLAHPFSLAVFED------KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             CCEEEEETTT-----TEEEEECSSSSCCEEE--C-CCSSSCSSCCCCEEETT------EEEEECSTTTCEEEEE
T ss_pred             CEEEEEecCC-----CeEEEEccCCCceEEE--E-ecCCcCCCceEeEEECC------EEEEEeCCCCeEEEEE
Confidence            7777766542     7899999975433211  0 11111223445555333      1334446666666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.17  E-value=0.00066  Score=61.62  Aligned_cols=239  Identities=12%  Similarity=0.101  Sum_probs=121.5

Q ss_pred             CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-
Q 013347          144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-  222 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-  222 (444)
                      ...+.++|.|+|+ ++++...|.|++++ + . ....+...                   ..+. ........++++|+ 
T Consensus        31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~-~-g-~~~~~~~~-------------------~v~~-~g~~~p~gia~~pdf   86 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIAERPGRIRLFR-E-G-RLSTYAEL-------------------SVYH-RGESGLLGLALHPRF   86 (352)
T ss_dssp             SCEEEEEECTTSC-EEEEETTTEEEEEE-T-T-EEEEEEEC-------------------CCCC-STTCSEEEEEECTTT
T ss_pred             CCceEEEEcCCCe-EEEEeCCCeEEEEE-C-C-CccEeecc-------------------eEee-cCCCCceeEEECCCC
Confidence            3567899999965 66676779998888 3 1 11111100                   0001 11257899999998 


Q ss_pred             --CCeEEEEee-C-----CCeEEEEEcCCCCc---eee---ec----CCCCeEEEEEecCCCeEEEEec-----------
Q 013347          223 --GRYLASASY-E-----SSSFTIWDVAQGLG---TPI---RR----GFGGLSILKWSPTGDYFFAAKF-----------  273 (444)
Q Consensus       223 --~~~l~~~~~-d-----~~~i~iwd~~~~~~---~~~---~~----~~~~v~~~~~sp~~~~l~~~~~-----------  273 (444)
                        +..|+.+.. .     + .|..|+...+..   ..+   ..    .......++|.|||.+.++.+.           
T Consensus        87 ~~~g~lYv~~~~~~~~~~~-~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~  165 (352)
T 2ism_A           87 PQEPYVYAYRTVAEGGLRN-QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLA  165 (352)
T ss_dssp             TTSCEEEEEEEECTTSSEE-EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTT
T ss_pred             CCCCEEEEEEecCCCCCcc-EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCC
Confidence              555555443 2     4 788888775321   111   11    1123468999999976665432           


Q ss_pred             --CCcEEEEECCCC-------------ceeccc-cCCCceeEEEECC-CCCEEEEEEcCCc-----eEEEEEeecCC---
Q 013347          274 --DGTFYLWETNTW-------------TSEPWS-STSGFVTGATWDP-EGRMILLAFAGSL-----TLGSIHFASKP---  328 (444)
Q Consensus       274 --d~~v~iwd~~~~-------------~~~~~~-~~~~~v~~~~~sp-~g~~l~~~~~~~~-----~~~~~~~~~~~---  328 (444)
                        .+.|.-++....             ....+. ++ .....++|+| +|++.++-...+.     ......+....   
T Consensus       166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyG  244 (352)
T 2ism_A          166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYG  244 (352)
T ss_dssp             CSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCC
T ss_pred             CCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCC
Confidence              256666666541             111111 22 3367899999 6665554333222     11122221110   


Q ss_pred             CC-cCCC-cCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe-E-EEEEeeeeeCCCCC
Q 013347          329 PS-LDAH-LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-I-SLSLIGFIRGPGDN  404 (444)
Q Consensus       329 ~~-~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~  404 (444)
                      +. .... ...-...++..+..+.....++| .+|.++++....      +.|...+++.... . .......+.. ...
T Consensus       245 wp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~------~~v~~v~~~~~~~~~~~~~~~~~~~~-~~r  316 (352)
T 2ism_A          245 WPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRG------QALLRLVLEGERGRWRVLRVETALSG-FGR  316 (352)
T ss_dssp             TTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETTT------TEEEEEEEEEETTEEEEEEEEEEEES-SCC
T ss_pred             CCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECCC------CEEEEEEECCCCcceeecchheeccc-CCC
Confidence            00 0000 00000122233333445677887 466665554444      7788887764331 1 0111122222 356


Q ss_pred             CcceeeeeCCCC
Q 013347          405 PKPVAFSFHDKF  416 (444)
Q Consensus       405 i~~v~~spdg~~  416 (444)
                      +..+++.|||.+
T Consensus       317 p~~v~~~pdG~l  328 (352)
T 2ism_A          317 LREVQVGPDGAL  328 (352)
T ss_dssp             EEEEEECTTSCE
T ss_pred             eeEEEECCCCcE
Confidence            889999999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.14  E-value=0.0037  Score=61.34  Aligned_cols=159  Identities=9%  Similarity=-0.019  Sum_probs=107.3

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      ..+..++|++.+..|+.+....+.|..+++.......+... ......+++++.++.| ++-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            46889999997777776665545999999876655544433 2457789998776655 555557889999998765433


Q ss_pred             cc-cCCCceeEEEECCCCCEEEEEEcC-CceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCEEEE
Q 013347          290 WS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAV  366 (444)
Q Consensus       290 ~~-~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~  366 (444)
                      +. ..-.....++++|....|+.+..+ ...+....+              .+.....+. .......++++++++.|+.
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~--------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~  182 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM--------------DGSERTTLVPNVGRANGLTIDYAKRRLYW  182 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCSCEEEECSCSSEEEEEEETTTTEEEE
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC--------------CCCceEEEECCCCCcceEEEccccCEEEE
Confidence            32 344567899999977777766532 445555553              122222222 2226789999999888888


Q ss_pred             EecCCCccccceEEEEEcCCCCe
Q 013347          367 SYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +....     +.|..+++.....
T Consensus       183 aD~~~-----~~I~~~d~dG~~~  200 (628)
T 4a0p_A          183 TDLDT-----NLIESSNMLGLNR  200 (628)
T ss_dssp             EETTT-----TEEEEEETTSCSC
T ss_pred             EECCC-----CEEEEEcCCCCce
Confidence            86653     7899999976543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.11  E-value=0.0023  Score=62.26  Aligned_cols=174  Identities=8%  Similarity=0.040  Sum_probs=93.3

Q ss_pred             EEEEecCCCe----EEEEECCCeEEEEEccCCCCceeEEecCC---CCCeEE-EEEeeCCCeEEEEec------CCcEEE
Q 013347          104 GVSWHQHKHI----VAFISGSTQVIVRDYEDSGKDACILTSDS---QRDVKV-LEWRPNGGRSLSVGC------KGGICI  169 (444)
Q Consensus       104 ~~~~sp~g~~----la~~~~dg~v~iw~~~~~~~~~~~~~~~~---~~~v~~-l~~s~~~~~ll~~~~------dg~v~i  169 (444)
                      .++++|.+..    |++++.|+.+.-+|..+ ++.........   ...+.+ ... .+ +.+++++.      ++.|+-
T Consensus       110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A  186 (599)
T 1w6s_A          110 GLAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTA  186 (599)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEE
T ss_pred             ceEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEE
Confidence            3556554444    77788899999999887 55544332111   001221 111 23 45665543      689999


Q ss_pred             EecCCCCCcceeecccccccc-------------------ccccCCCCceEEEEEeeccCCCce-EEEEEccCCCeEEEE
Q 013347          170 WAPSYPGNAASVRSGAASFLG-------------------ALSRGPGTRWTLVDFLRSQNGEQI-TALSWGPDGRYLASA  229 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~~~  229 (444)
                      +|..+++..............                   ...+ ..+.|.     .+  ...+ ..+++.++...++.+
T Consensus       187 ~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw-~g~~~~-----~g--g~~~W~~~a~d~~~g~vy~g  258 (599)
T 1w6s_A          187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTW-EGDAWK-----IG--GGTNWGWYAYDPGTNLIYFG  258 (599)
T ss_dssp             EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTS-STTGGG-----GC--CCCCCSCCEEETTTTEEEEE
T ss_pred             EECCCCcEEEEEcCCCCccccccccccccccccccccccccccC-CCccee-----cC--CCccccceeEeCCCCEEEEe
Confidence            999876655444332111000                   0000 001110     00  0111 234556666666666


Q ss_pred             eeCC---------------CeEEEEEcCCCCceeeecCC-C---------CeEEEEEe-cCC---CeEEEEecCCcEEEE
Q 013347          230 SYES---------------SSFTIWDVAQGLGTPIRRGF-G---------GLSILKWS-PTG---DYFFAAKFDGTFYLW  280 (444)
Q Consensus       230 ~~d~---------------~~i~iwd~~~~~~~~~~~~~-~---------~v~~~~~s-p~~---~~l~~~~~d~~v~iw  280 (444)
                      ..++               +.|..+|.++++.+...... .         ...-+... .+|   +.++.++.+|.++++
T Consensus       259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l  338 (599)
T 1w6s_A          259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL  338 (599)
T ss_dssp             CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred             CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence            5431               27899999999876543321 1         11112222 467   456778899999999


Q ss_pred             ECCCCcee
Q 013347          281 ETNTWTSE  288 (444)
Q Consensus       281 d~~~~~~~  288 (444)
                      |.++++..
T Consensus       339 D~~tG~~l  346 (599)
T 1w6s_A          339 DRTDGALV  346 (599)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCCEe
Confidence            99999873

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.08  E-value=0.003  Score=61.46  Aligned_cols=72  Identities=14%  Similarity=0.082  Sum_probs=48.2

Q ss_pred             EEEEccCCCeEEEEee--------------------CC---CeEEEEEcCCCCceeeecC---C--------CCeEEEEE
Q 013347          216 ALSWGPDGRYLASASY--------------------ES---SSFTIWDVAQGLGTPIRRG---F--------GGLSILKW  261 (444)
Q Consensus       216 ~~~~sp~~~~l~~~~~--------------------d~---~~i~iwd~~~~~~~~~~~~---~--------~~v~~~~~  261 (444)
                      .++++|+...++.+..                    |+   +.|.-+|..+++.+.....   .        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4667777777776653                    20   3899999999987764432   1        1111 222


Q ss_pred             e-cCCC---eEEEEecCCcEEEEECCCCcee
Q 013347          262 S-PTGD---YFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       262 s-p~~~---~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                      . .+|+   .++.++.+|.++++|.++++..
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  359 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQ  359 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence            2 4674   6788899999999999998863

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.05  E-value=0.0024  Score=61.96  Aligned_cols=64  Identities=9%  Similarity=0.101  Sum_probs=35.2

Q ss_pred             CeEEEEEC-CCeEEEEEc-cCCCCceeEEecCCCCC----------eEEEEEeeCCCeEEEEecCCcEEEEecCCCCCc
Q 013347          112 HIVAFISG-STQVIVRDY-EDSGKDACILTSDSQRD----------VKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (444)
Q Consensus       112 ~~la~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~~~----------v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~  178 (444)
                      ..+++++. ++.|.-+|. .+ ++............          ...++.  .++.+++++.++.+..+|..+++..
T Consensus        63 g~vyv~~~~~~~v~AlD~~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDP-GKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCC-ccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            34444555 677777777 55 44443332111100          011222  2467888888999999998855443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.02  E-value=0.0026  Score=56.13  Aligned_cols=216  Identities=11%  Similarity=0.154  Sum_probs=123.4

Q ss_pred             EecCCCeEEEEEC--CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCC--------------cEEEE
Q 013347          107 WHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--------------GICIW  170 (444)
Q Consensus       107 ~sp~g~~la~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg--------------~v~iw  170 (444)
                      |+.+|.+|+....  ++.  ||.+...+.....+..   ..  +--++++++.++.+....              .|+..
T Consensus        21 ~~~~g~~iy~~n~~d~~~--ly~~~~dg~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i   93 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGR--LYAMNIDGSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI   93 (302)
T ss_dssp             EEEETTEEEEEEGGGTTE--EEEEETTSCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred             EEEeCCEEEEEeCCCCce--EEEEcCCCCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence            4568888888752  444  4544444544444432   12  334588988888876542              34444


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe---eCCCeEEEEEcCCCCce
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS---YESSSFTIWDVAQGLGT  247 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~~i~iwd~~~~~~~  247 (444)
                      +++... ...+..                            .  .+..|++++++|+...   .+...|...++......
T Consensus        94 ~~dg~~-~~~l~~----------------------------~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~  142 (302)
T 3s25_A           94 KRNGHG-STVLDP----------------------------D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK  142 (302)
T ss_dssp             ETTSCC-CEEEEC----------------------------S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE
T ss_pred             eCCCCc-ceEeec----------------------------C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE
Confidence            444221 111110                            1  1236788999998876   22226666677655555


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCC-ceEEEEEee
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFA  325 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~-~~~~~~~~~  325 (444)
                      .+..+..    .+++++++.|+-.+. ...|.+.++.++..+.+..  +... ..++|++.+|+.....+ ..++...+ 
T Consensus       143 ~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~l-  214 (302)
T 3s25_A          143 KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNI-  214 (302)
T ss_dssp             EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECS-
T ss_pred             EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEEC-
Confidence            5655433    456788888875554 5688888988776655432  2222 34569999998765432 34444443 


Q ss_pred             cCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                                   .+.....+... .+  ..|+|++++|..++....    +.|..-++....
T Consensus       215 -------------dG~~~~~Lt~~-~~--~~~~~~g~~Iy~~~~~~~----~~i~~~~~DG~~  257 (302)
T 3s25_A          215 -------------NNPNPVVLTEA-NI--EHYNVYGSLIFYQRGGDN----PALCVVKNDGTG  257 (302)
T ss_dssp             -------------SSCCCEECSCS-CE--EEEEEETTEEEEEECSSS----CEEEEEETTSCC
T ss_pred             -------------CCCCeEEEeCC-Cc--ceEEECCCEEEEEECCCC----cEEEEEECCCCc
Confidence                         22333333322 23  347889999887643311    677777777543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.00  E-value=0.0017  Score=57.25  Aligned_cols=160  Identities=14%  Similarity=0.097  Sum_probs=105.8

Q ss_pred             CCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEee--ccCCCceEEEEE
Q 013347          143 QRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSW  219 (444)
Q Consensus       143 ~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  219 (444)
                      ..-..+++|.+..+.++.++. .++|..|+....... .+...                    .+.  +.....+..+.|
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~--------------------~~s~~g~~~~~~sGl~~   70 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVID--------------------GASSNGDGEQQMSGLSL   70 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EECCT--------------------TTCCSSCCSEEEEEEEE
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEecC--------------------CccccCCCcceeeEEEE
Confidence            334457899987677777774 799999998632211 11000                    000  111124689999


Q ss_pred             ---ccCCCeEEEEee-------------CCCeEEEEEcC---CCCceeeecC--------------CCCeEEEEEecCCC
Q 013347          220 ---GPDGRYLASASY-------------ESSSFTIWDVA---QGLGTPIRRG--------------FGGLSILKWSPTGD  266 (444)
Q Consensus       220 ---sp~~~~l~~~~~-------------d~~~i~iwd~~---~~~~~~~~~~--------------~~~v~~~~~sp~~~  266 (444)
                         .|+++++++...             +. .|..||+.   +++.......              ......++..++|+
T Consensus        71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~~-~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn  149 (334)
T 2p9w_A           71 LTHDNSKRLFAVMKNAKSFNFADQSSHGAS-SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN  149 (334)
T ss_dssp             SSSSSCCEEEEEEEETTTTCTTSCCSSSCC-EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred             eccCCCCcEEEEEcccccccccccccCCCC-EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence               688877775432             44 79999999   6765543321              12478999999999


Q ss_pred             eEEEEecC-CcEEEEECCCCceeccc------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          267 YFFAAKFD-GTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       267 ~l~~~~~d-~~v~iwd~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      ..++++.. +.|..++........+.      ......+.++++|+|+.|++... .+.+..+++.
T Consensus       150 aYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          150 SYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             EEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             EEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            99999888 88888887765433221      11223679999999999987766 7888888864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.99  E-value=0.0086  Score=54.22  Aligned_cols=232  Identities=10%  Similarity=0.081  Sum_probs=119.7

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE----ecCCCCCeEEEEEeeC---CCeEEEEecC------CcEE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPN---GGRSLSVGCK------GGIC  168 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~----~~~~~~~v~~l~~s~~---~~~ll~~~~d------g~v~  168 (444)
                      -+.++|.|+|++++ +...|.|.+++ .  +......    ..........|+|+|+   ++.++++...      +.|.
T Consensus        33 P~~ia~~pdG~l~V-~e~~g~I~~i~-~--g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           33 PWALAFLPDGGMLI-AERPGRIRLFR-E--GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             EEEEEECTTSCEEE-EETTTEEEEEE-T--TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             ceEEEEcCCCeEEE-EeCCCeEEEEE-C--CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            67899999999555 46679999888 2  3222111    1122457889999998   6666665442      5566


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEee--ccCCCceEEEEEccCCCeEEEEeeCC------------C
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR--SQNGEQITALSWGPDGRYLASASYES------------S  234 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~------------~  234 (444)
                      .|+.... ...   ..               -.+...+.  .........++|.|||.+.++.+..+            +
T Consensus       109 r~~~~~~-~~~---~~---------------~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g  169 (352)
T 2ism_A          109 RLRHLGE-RGV---LD---------------RVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG  169 (352)
T ss_dssp             EEEECSS-CEE---EE---------------EEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred             EEEeCCC-CcC---ce---------------EEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence            6666521 110   00               01122222  11012346899999997666543211            2


Q ss_pred             eEEEEEcCCC-------------CceeeecCCCCeEEEEEec-CCCeEEEEecCCc--------EEEEECCCCce-----
Q 013347          235 SFTIWDVAQG-------------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT--------FYLWETNTWTS-----  287 (444)
Q Consensus       235 ~i~iwd~~~~-------------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~--------v~iwd~~~~~~-----  287 (444)
                      .|..++....             ..............++|+| +++++++-...+.        |.+.  ..+..     
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~  247 (352)
T 2ism_A          170 KILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPR  247 (352)
T ss_dssp             EEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTT
T ss_pred             EEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCc
Confidence            5666665431             1111111223466789999 5665554333232        3333  22221     


Q ss_pred             --------------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-cccCCce
Q 013347          288 --------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQGI  352 (444)
Q Consensus       288 --------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v  352 (444)
                                    ..+ .+......++| .+|.+ +++......+..+.+........       ...... +.....+
T Consensus       248 ~~g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l-~v~~~~~~~v~~v~~~~~~~~~~-------~~~~~~~~~~~~rp  317 (352)
T 2ism_A          248 VVGRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDL-YVAGLRGQALLRLVLEGERGRWR-------VLRVETALSGFGRL  317 (352)
T ss_dssp             CCSCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEE-EEEETTTTEEEEEEEEEETTEEE-------EEEEEEEEESSCCE
T ss_pred             ccCCCCCCCCcCCeEec-CCCCCCcceEE-ECCEE-EEEECCCCEEEEEEECCCCccee-------ecchheecccCCCe
Confidence                          011 22234567777 45554 44555556777777643211000       000111 1122378


Q ss_pred             eEEEECCCCCEEEEEe
Q 013347          353 EKIAWDASGERLAVSY  368 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~  368 (444)
                      ..+++.|||.++++..
T Consensus       318 ~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          318 REVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEECTTSCEEEEEC
T ss_pred             eEEEECCCCcEEEEEe
Confidence            9999999998776654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.95  E-value=0.0052  Score=55.04  Aligned_cols=242  Identities=12%  Similarity=0.037  Sum_probs=122.6

Q ss_pred             CCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          144 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ...+.|+|.||| .++++.. .|.|++++..... ...+...                   ..+..........++++|+
T Consensus        32 ~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~-~~~v~~~-------------------~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           32 NSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGR-KTELGEV-------------------PGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-EEEEEEC-------------------TTCCCBTTBSEEEEEECTT
T ss_pred             CCceEEEEcCCC-cEEEEEecCCEEEEEECCCCc-Eeeeccc-------------------CceeecCCCCceeeEeccc
Confidence            457899999996 4666666 7999888754221 1111100                   0011111357899999995


Q ss_pred             ---CCeEEEE-e--eCCCeEEEEEcCCCC--------ceeeec-----CCCCeEEEEEecCCCeEEEEec----------
Q 013347          223 ---GRYLASA-S--YESSSFTIWDVAQGL--------GTPIRR-----GFGGLSILKWSPTGDYFFAAKF----------  273 (444)
Q Consensus       223 ---~~~l~~~-~--~d~~~i~iwd~~~~~--------~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~----------  273 (444)
                         +.+|+.. +  .++ .|.-|.+..+.        ...+..     .......++|.|||.+.++.+.          
T Consensus        91 f~~~g~lYv~yt~~~~~-~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~  169 (347)
T 3das_A           91 YASDHMVYAYFTSASDN-RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDR  169 (347)
T ss_dssp             HHHHCEEEEEEECSSSE-EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCT
T ss_pred             cccCCEEEEEEecCCCC-EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCC
Confidence               3444432 2  233 67777665421        111111     1223457999999987776542          


Q ss_pred             ---CCcEEEEECCCC--------ce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC---CC-cCCCc-C
Q 013347          274 ---DGTFYLWETNTW--------TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP---PS-LDAHL-L  336 (444)
Q Consensus       274 ---d~~v~iwd~~~~--------~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~~-~  336 (444)
                         .|.|.-++....        .. ....++. ....++|+|+|++.++-...+....+-.+....   +. ..... .
T Consensus       170 ~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~  248 (347)
T 3das_A          170 KSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG  248 (347)
T ss_dssp             TCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred             CCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence               355555565532        11 1112333 357899999988766543333333333332110   00 00000 0


Q ss_pred             CCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          337 PVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       337 ~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                      .-...++..+..+ .....++|. +|..+...-..      +.|....++.+... ......+.+...++..|+..|||.
T Consensus       249 ~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~------~~l~~v~~~~~~~~-~~~e~~l~~~~gR~~dv~~~pDG~  320 (347)
T 3das_A          249 SGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRG------ERLWRIPLKGTAAA-ADPQAFLEGEYGRLRTVAPAGGDK  320 (347)
T ss_dssp             TTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTT------CSEEEEEEETTEES-SCCEEESTTTSSCEEEEEEEETTE
T ss_pred             ccccCCcEecCCCCCCCcceEEE-cCceeeccccC------CEEEEEEecCCcee-cceEEeecCCCCCccEEEECCCCc
Confidence            0001122223222 245677776 45555544444      55666666543221 111223444456789999999987


Q ss_pred             C
Q 013347          416 F  416 (444)
Q Consensus       416 ~  416 (444)
                      +
T Consensus       321 l  321 (347)
T 3das_A          321 L  321 (347)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.94  E-value=0.0048  Score=55.52  Aligned_cols=189  Identities=13%  Similarity=0.130  Sum_probs=114.8

Q ss_pred             ceEEEEEecCCCeEEEE------------ECCCeEEEEEccCC-CCcee-EEecC----CCCCeEEEEEee--CCC-eEE
Q 013347          101 DLQGVSWHQHKHIVAFI------------SGSTQVIVRDYEDS-GKDAC-ILTSD----SQRDVKVLEWRP--NGG-RSL  159 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~------------~~dg~v~iw~~~~~-~~~~~-~~~~~----~~~~v~~l~~s~--~~~-~ll  159 (444)
                      +.-+++..|+|..++++            ..+|.|.++|.++. .+... .+...    ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            45577788887655544            16899999998743 22222 22111    224677788766  343 455


Q ss_pred             EEec---CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee---C-
Q 013347          160 SVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY---E-  232 (444)
Q Consensus       160 ~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d-  232 (444)
                      ++..   +.+|.+|+++..+..                     ...+..+.+..-...+++++.++|++.++...   | 
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~---------------------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~  189 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKS---------------------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDP  189 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTE---------------------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSH
T ss_pred             EEECCCCCCeEEEEEEECCCCE---------------------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCc
Confidence            5533   367888888743221                     22444555554567899999999987766431   1 


Q ss_pred             -----------C-CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCC-Ccee--ccccCCCc
Q 013347          233 -----------S-SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNT-WTSE--PWSSTSGF  296 (444)
Q Consensus       233 -----------~-~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~-~~~~--~~~~~~~~  296 (444)
                                 . +.|..+|.  ++...+...-.....++|+||++.|+.+ +..+.|..|++.. ++..  ......+.
T Consensus       190 ~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~  267 (355)
T 3sre_A          190 YLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL  267 (355)
T ss_dssp             HHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE
T ss_pred             ccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCC
Confidence                       1 14444443  4444444444667899999999988655 4578999999863 3331  11133466


Q ss_pred             eeEEEECC-CCCEEEEE
Q 013347          297 VTGATWDP-EGRMILLA  312 (444)
Q Consensus       297 v~~~~~sp-~g~~l~~~  312 (444)
                      ...+++.+ +|++.+++
T Consensus       268 PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEEECTTTCCEEEEE
T ss_pred             CceEEEeCCCCcEEEEe
Confidence            77888888 58866644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.94  E-value=0.0039  Score=54.96  Aligned_cols=178  Identities=8%  Similarity=0.103  Sum_probs=104.3

Q ss_pred             EEEEecCCCeEEEEECC--------------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe--cCCcE
Q 013347          104 GVSWHQHKHIVAFISGS--------------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG--CKGGI  167 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~--~dg~v  167 (444)
                      +--++++|.+|+.....              ..|+..+++  +.....+...   .  +..|+++++.++.+.  .++.-
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d--g~~~~~l~~~---~--~~~~s~~g~~Iy~~~~~~~~~~  129 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN--GHGSTVLDPD---P--CIYASLIGNYIYYLHYDTQTAT  129 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT--SCCCEEEECS---C--EEEEEEETTEEEEEEESSSSCE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC--CCcceEeecC---C--ccEEEEeCCEEEEEeecCCCCc
Confidence            45678999999988643              245555555  4444444322   1  236788888888776  34444


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      .||.+...+....                        .+..+   .+  .+++++++.|+..+....+|.+.++..+...
T Consensus       130 ~Iy~~~~dGs~~~------------------------~lt~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          130 SLYRIRIDGEEKK------------------------KIKNH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA  180 (302)
T ss_dssp             EEEEEETTSCCCE------------------------EEESS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred             eEEEEECCCCCeE------------------------EEeCC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence            4554442222111                        11111   12  4567888888877663348888888776555


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecC--CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEe
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHF  324 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~  324 (444)
                      .+..  +... ..++|++.+|+-....  ..|..-++.+.....+...  .+  ..|+|++.+|+.+.. ....++.+.+
T Consensus       181 ~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~  253 (302)
T 3s25_A          181 LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSLIFYQRGGDNPALCVVKN  253 (302)
T ss_dssp             EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTEEEEEECSSSCEEEEEET
T ss_pred             EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCEEEEEECCCCcEEEEEEC
Confidence            5543  2332 3466999988765443  3677777877666555432  23  458899999987633 3345555554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.004  Score=55.38  Aligned_cols=190  Identities=12%  Similarity=0.141  Sum_probs=114.2

Q ss_pred             CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC----CCe--EEEEec----CCcEEEEecCCCC-Cc
Q 013347          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGR--SLSVGC----KGGICIWAPSYPG-NA  178 (444)
Q Consensus       110 ~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~----~~~--ll~~~~----dg~v~iw~~~~~~-~~  178 (444)
                      ...+++.....+-+.+||+.  ++....+.   .+.+..+..-|+    |+.  +++++.    +++|++|+++... ..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~--G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD--GKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT--SCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred             CccEEEEEcCCCCEEEEcCC--CcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence            34555555678899999995  66666553   256777777663    222  334433    4789999885221 11


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEE--ccC-CC-eEEEEeeCCCeEEEEEcCC---C----Cce
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPD-GR-YLASASYESSSFTIWDVAQ---G----LGT  247 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-~~-~l~~~~~d~~~i~iwd~~~---~----~~~  247 (444)
                      ..+....                  ..+... ...+..+++  +|. ++ ++++...+| .+..|++..   +    +..
T Consensus       114 ~~i~~~~------------------~pv~t~-~~~pyGlcly~~~~~g~~yafV~~k~G-~~~q~~l~~~~~g~~~~~lV  173 (355)
T 3amr_A          114 QSMTDPD------------------HPIATA-INEVYGFTLYHSQKTGKYYAMVTGKEG-EFEQYELKADKNGYISGKKV  173 (355)
T ss_dssp             EECSCTT------------------SCEECC-CSSCCCEEEEECTTTCCEEEEEECSSS-EEEEEEEEECTTSCEEEEEE
T ss_pred             eeccccc------------------cCcCCC-CCCeeEEEEEecCCCCcEEEEEECCCC-eEEEEEEEeCCCCcccceEE
Confidence            1110000                  000000 135566666  774 44 466666676 999999842   2    233


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECC-----CCceeccc---cCCCceeEEEE--CCCCC-EEEEEEcCC
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN-----TWTSEPWS---STSGFVTGATW--DPEGR-MILLAFAGS  316 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~---~~~~~v~~~~~--sp~g~-~l~~~~~~~  316 (444)
                      +.....+.+..|...+....|+.+-++.-|..++.+     +++.....   .....+..+++  .++++ +|++++.++
T Consensus       174 R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          174 RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            444556789999999988899999998777777855     22232222   22246788888  56666 788787666


Q ss_pred             ceEEEEEe
Q 013347          317 LTLGSIHF  324 (444)
Q Consensus       317 ~~~~~~~~  324 (444)
                      .....++.
T Consensus       254 ~s~~Vydr  261 (355)
T 3amr_A          254 SSYAIYDR  261 (355)
T ss_dssp             TEEEEEES
T ss_pred             CEEEEEEC
Confidence            66666654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.94  E-value=0.011  Score=57.49  Aligned_cols=186  Identities=11%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             CeEEEEEC-CCeEEEEEc-cCCCCceeEEecCCC----------CCeEEEEEeeCCCe----EEEEecCCcEEEEecCCC
Q 013347          112 HIVAFISG-STQVIVRDY-EDSGKDACILTSDSQ----------RDVKVLEWRPNGGR----SLSVGCKGGICIWAPSYP  175 (444)
Q Consensus       112 ~~la~~~~-dg~v~iw~~-~~~~~~~~~~~~~~~----------~~v~~l~~s~~~~~----ll~~~~dg~v~iw~~~~~  175 (444)
                      ..+++++. ++.|.-+|. .+ ++..........          .....++++|.++.    +++++.|+.|.-+|..++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~t-G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDP-GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCT-TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEeCCCCEEEEEeCCCC-CcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            34444555 666777776 55 444433321111          00123455544455    888888899999998855


Q ss_pred             CCcceeeccccccccccccCCCCceEEEEEeeccC-CCceEE-EEEccCCCeEEEEe------eCCCeEEEEEcCCCCce
Q 013347          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITA-LSWGPDGRYLASAS------YESSSFTIWDVAQGLGT  247 (444)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~sp~~~~l~~~~------~d~~~i~iwd~~~~~~~  247 (444)
                      +........                       .+. ...+.+ ..+ .++. +++++      .++ .|+-+|.++++.+
T Consensus       142 ~~~W~~~~~-----------------------~~~~~~~~~ssP~v-~~g~-V~vg~~g~e~g~~g-~v~A~D~~TG~~~  195 (599)
T 1w6s_A          142 ETVWKVENS-----------------------DIKVGSTLTIAPYV-VKDK-VIIGSSGAELGVRG-YLTAYDVKTGEQV  195 (599)
T ss_dssp             CEEEEEECC-----------------------CGGGTCBCCSCCEE-ETTE-EEECCBCGGGTCCC-EEEEEETTTCCEE
T ss_pred             CEEEeecCC-----------------------CCCccceeecCCEE-ECCE-EEEEecccccCCCC-eEEEEECCCCcEE
Confidence            443322211                       000 001111 111 1444 44444      266 9999999998776


Q ss_pred             eeecCCCCe---------------------------------------EEEEEecCCCeEEEEecC--------------
Q 013347          248 PIRRGFGGL---------------------------------------SILKWSPTGDYFFAAKFD--------------  274 (444)
Q Consensus       248 ~~~~~~~~v---------------------------------------~~~~~sp~~~~l~~~~~d--------------  274 (444)
                      .........                                       ..+++.++...++.+..+              
T Consensus       196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~  275 (599)
T 1w6s_A          196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK  275 (599)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc
Confidence            433322111                                       135667777777777654              


Q ss_pred             --CcEEEEECCCCceec---cccCCC-------ceeEEEEC-CCCC--EEEEEEcCCceEEEEEe
Q 013347          275 --GTFYLWETNTWTSEP---WSSTSG-------FVTGATWD-PEGR--MILLAFAGSLTLGSIHF  324 (444)
Q Consensus       275 --~~v~iwd~~~~~~~~---~~~~~~-------~v~~~~~s-p~g~--~l~~~~~~~~~~~~~~~  324 (444)
                        +.|..+|.++++...   ...|..       ...-+... .+|+  .+++..+.++.++.++.
T Consensus       276 y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             ccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence              379999999998742   223321       11112222 4563  33444556677777764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.91  E-value=0.012  Score=53.21  Aligned_cols=233  Identities=11%  Similarity=0.078  Sum_probs=120.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe----cCCCCCeEEEEEeeC---CCeEEEEec----C----Cc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT----SDSQRDVKVLEWRPN---GGRSLSVGC----K----GG  166 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~v~~l~~s~~---~~~ll~~~~----d----g~  166 (444)
                      .+.++|.|+|++++ +..+|.|++++..  +. .....    .........|+|+|+   ++.|+++..    +    +.
T Consensus        31 P~~ia~~pdG~l~V-~e~~g~I~~~d~~--G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           31 PWSIAPLGGGRYLV-TERPGRLVLISPS--GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEEEETTEEEE-EETTTEEEEECSS--CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CeEEEEcCCCeEEE-EeCCCEEEEEeCC--Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            67899999998555 4667999888632  33 22211    122356889999997   566666543    2    45


Q ss_pred             EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC------------C
Q 013347          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES------------S  234 (444)
Q Consensus       167 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~------------~  234 (444)
                      |..|+......  .+...               -.++..+..........++|.|||.+.++.+..+            +
T Consensus       107 v~r~~~~~~~~--~~~~~---------------~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G  169 (354)
T 3a9g_A          107 VIRGRLDGSTF--KLKEV---------------KTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG  169 (354)
T ss_dssp             EEEEEECSSSC--CEEEE---------------EEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred             EEEEEECCCCc--CcCcc---------------EEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence            66666552210  00000               0111212211112346799999998666643211            2


Q ss_pred             eEEEEEcCCC--------CceeeecCCCCeEEEEEec-CCCeEEEEecCC---cEEEEECCCCce---------------
Q 013347          235 SFTIWDVAQG--------LGTPIRRGFGGLSILKWSP-TGDYFFAAKFDG---TFYLWETNTWTS---------------  287 (444)
Q Consensus       235 ~i~iwd~~~~--------~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~---~v~iwd~~~~~~---------------  287 (444)
                      .|..++....        ..............++|+| +++++++-...+   .|.+...  +..               
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~--G~nyGwp~~~g~~~~~~~  247 (354)
T 3a9g_A          170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK--GGNYGWPLATGKAGRGEF  247 (354)
T ss_dssp             EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT--TCBCCTTTCCSCCCCTTS
T ss_pred             EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC--CCcCCCCcccCCCCCCCC
Confidence            5655555432        1111112223456899999 666555433221   2444321  110               


Q ss_pred             ----eccccCCCceeEEEEC-------CCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccc-ccc-CCceeE
Q 013347          288 ----EPWSSTSGFVTGATWD-------PEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTG-SQGIEK  354 (444)
Q Consensus       288 ----~~~~~~~~~v~~~~~s-------p~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~  354 (444)
                          ..+.........++|.       .+|.+++ +.-....+..+.+.....          ...... +.+ ...+..
T Consensus       248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v-~~~~~~~v~~~~~~~~g~----------~~~~~~~~~~~~~rp~~  316 (354)
T 3a9g_A          248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLI-ACLRGSMLAAVNFGDNME----------VRKISTFFKNVFGRLRD  316 (354)
T ss_dssp             CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEE-EETTTTEEEEEEECGGGC----------EEEEEEECTTTSCCEEE
T ss_pred             cCCEeecCCCCcCCcceEEECCCCCcccCCcEEE-EEcCCCEEEEEEECCCCc----------ccceeeeccCCCCCeeE
Confidence                0110123356778883       4565544 555556777777642100          000111 222 226889


Q ss_pred             EEECCCCCEEEEEe
Q 013347          355 IAWDASGERLAVSY  368 (444)
Q Consensus       355 ~~~spdg~~l~~~~  368 (444)
                      +++.|||.+.++..
T Consensus       317 v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          317 VVIDDDGGILISTS  330 (354)
T ss_dssp             EEECTTSCEEEEEC
T ss_pred             EEECCCCcEEEEEe
Confidence            99999998666653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.86  E-value=0.0006  Score=67.65  Aligned_cols=186  Identities=10%  Similarity=0.006  Sum_probs=98.4

Q ss_pred             EEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cC-----CcEEEEecCCCC
Q 013347          104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CK-----GGICIWAPSYPG  176 (444)
Q Consensus       104 ~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~d-----g~v~iw~~~~~~  176 (444)
                      ++++..+|+++++|+ .+..+.+||..+. .-...........-.+++..++++.++.+| .+     ..+.+||..+. 
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~-  324 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK-  324 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT-
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC-
Confidence            477889999999988 4568999998863 211111111122223455666766666666 23     56888988732 


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccCCCeEEEEeeCC--------CeEEEEEcCCCCc
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLG  246 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~~~~d~--------~~i~iwd~~~~~~  246 (444)
                                            .|..+...  ....... ....+..+++.++.++.++        ..+..||..+...
T Consensus       325 ----------------------~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w  381 (656)
T 1k3i_A          325 ----------------------TWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD  381 (656)
T ss_dssp             ----------------------EEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred             ----------------------cceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence                                  22221000  0000000 0011223444444443332        1678899887653


Q ss_pred             eeeec-CC---------CCeEEEEEec-CCCeEEEEecCC-----------cEEEEECCCCceeccc----cCCCceeEE
Q 013347          247 TPIRR-GF---------GGLSILKWSP-TGDYFFAAKFDG-----------TFYLWETNTWTSEPWS----STSGFVTGA  300 (444)
Q Consensus       247 ~~~~~-~~---------~~v~~~~~sp-~~~~l~~~~~d~-----------~v~iwd~~~~~~~~~~----~~~~~v~~~  300 (444)
                      ..... ..         ..-.++.+.. ++++++.|+.++           .|.+||..+.+.....    .......++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~  461 (656)
T 1k3i_A          382 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS  461 (656)
T ss_dssp             EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE
T ss_pred             eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCe
Confidence            32111 11         1223444544 677778877532           6888898877654332    122223455


Q ss_pred             EECCCCCEEEEEEc
Q 013347          301 TWDPEGRMILLAFA  314 (444)
Q Consensus       301 ~~sp~g~~l~~~~~  314 (444)
                      ...|+++.+++++.
T Consensus       462 ~~l~~g~i~v~GG~  475 (656)
T 1k3i_A          462 VVLPDGSTFITGGQ  475 (656)
T ss_dssp             EECTTSCEEEECCB
T ss_pred             EECCCCCEEEECCc
Confidence            67789998888764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.86  E-value=0.013  Score=51.69  Aligned_cols=195  Identities=9%  Similarity=0.020  Sum_probs=113.2

Q ss_pred             EEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCC-----C--CCeEEEEE---eeCCCeEEEEec---------
Q 013347          104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDS-----Q--RDVKVLEW---RPNGGRSLSVGC---------  163 (444)
Q Consensus       104 ~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~-----~--~~v~~l~~---s~~~~~ll~~~~---------  163 (444)
                      +++|++....|..++ ..++|..|+... +....+. ...     .  ..+..|.|   .|+ ++|+++..         
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~~-~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNVV-IDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEEC-CTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEEe-cCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccc
Confidence            689998666666666 799999999874 2222222 222     1  14678999   588 56665433         


Q ss_pred             -----CCcEEEEecC---CCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CC
Q 013347          164 -----KGGICIWAPS---YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SS  234 (444)
Q Consensus       164 -----dg~v~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~  234 (444)
                           +..|..||+.   +.+....+.-.....  .           .....+........++..++|+..++.+.. + 
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~--~-----------~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~-  159 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQD--E-----------FEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP-  159 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHH--H-----------HHHHHSSCCEEEEEEEECTTSCEEEEEEESSC-
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccc--c-----------ccccccccccCCceeEECCCCCEEEeCCCCCC-
Confidence                 4668888887   443332211000000  0           000000011357899999999999888887 6 


Q ss_pred             eEEEEEcCCCCceeeecC------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce--eccc--cC---CCceeEE-
Q 013347          235 SFTIWDVAQGLGTPIRRG------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWS--ST---SGFVTGA-  300 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~--~~~~--~~---~~~v~~~-  300 (444)
                      .|...+............      ......++++|+|+.|++....+.|..+|+.+...  ..+.  +.   ......+ 
T Consensus       160 ~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgil  239 (334)
T 2p9w_A          160 AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIV  239 (334)
T ss_dssp             EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEE
T ss_pred             eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccc
Confidence            777776654432222211      12366899999999998887799999999885332  2121  21   1223343 


Q ss_pred             EECCCCCEEEEEEcC
Q 013347          301 TWDPEGRMILLAFAG  315 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~  315 (444)
                      ..-.+|+.++++...
T Consensus       240 p~~~~G~vllV~~~~  254 (334)
T 2p9w_A          240 TVPVGNESVLVGARA  254 (334)
T ss_dssp             EEEETTEEEEEEEET
T ss_pred             ccccCCEEEEEEcCC
Confidence            333477776655443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.85  E-value=0.0031  Score=56.09  Aligned_cols=192  Identities=16%  Similarity=0.199  Sum_probs=109.3

Q ss_pred             CeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc----CCCe--EEEE
Q 013347          156 GRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP----DGRY--LASA  229 (444)
Q Consensus       156 ~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~~~~--l~~~  229 (444)
                      ..++.+...+.+.+||+. ++....+..                            +.++.+..-|    .|+.  ++.+
T Consensus        41 s~ii~t~k~~gL~Vydl~-G~~l~~~~~----------------------------g~~nnVD~r~~~~l~g~~~dla~a   91 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLD-GKMLHSYNT----------------------------GKLNNVDIRYDFPLNGKKVDIAAA   91 (355)
T ss_dssp             CEEEEEETTTEEEEEETT-SCEEEEECC----------------------------SCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEcCCCCEEEEcCC-CcEEEEccC----------------------------CCcccEEEecccccCCceEeEEEE
Confidence            445556667899999995 443333321                            2344444433    2332  3333


Q ss_pred             -eeC--CCeEEEEEcC--CCCceeeec------CC-CCeEEEEE--ecC-CC-eEEEEecCCcEEEEECC---CCce---
Q 013347          230 -SYE--SSSFTIWDVA--QGLGTPIRR------GF-GGLSILKW--SPT-GD-YFFAAKFDGTFYLWETN---TWTS---  287 (444)
Q Consensus       230 -~~d--~~~i~iwd~~--~~~~~~~~~------~~-~~v~~~~~--sp~-~~-~l~~~~~d~~v~iwd~~---~~~~---  287 (444)
                       ..+  .++|.+|++.  +++...+..      .. ..+..+|+  +|. ++ ++++...+|.+..|++.   .++.   
T Consensus        92 s~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~  171 (355)
T 3amr_A           92 SNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK  171 (355)
T ss_dssp             EECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE
T ss_pred             eCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce
Confidence             333  3499999773  333222211      11 55667777  774 44 57778888999999883   3322   


Q ss_pred             -eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccC--C-ceeEEEE--CCCC
Q 013347          288 -EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS--Q-GIEKIAW--DASG  361 (444)
Q Consensus       288 -~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~--spdg  361 (444)
                       .......+.+..+...+....|+++-.+ .-+|.+......        ..+...+..+...  . .+..|++  .++|
T Consensus       172 lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~--------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g  242 (355)
T 3amr_A          172 KVRAFKMNSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDG--------GSNGTVIDRADGRHLTRDIEGLTIYYAADG  242 (355)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTS--------CSCCEEEEEBSSSSBCSCEEEEEEEECGGG
T ss_pred             EEEEecCCCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCC--------CCCceEEEEecCCccccCcceEEEEecCCC
Confidence             2222345678899999988888877554 334444421110        0011222222211  1 5777777  6677


Q ss_pred             C-EEEEEecCCCccccceEEEEEcC-CCCeE
Q 013347          362 E-RLAVSYKGGDDIYKGLIAIYDAR-RTPLI  390 (444)
Q Consensus       362 ~-~l~~~~~d~~~~~d~~i~vwd~~-~~~~~  390 (444)
                      + ||++++.+.     +++.|||.+ +.+.+
T Consensus       243 ~gyLivSsQG~-----~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          243 KGYLMASSQGN-----SSYAIYDRQGKNKYV  268 (355)
T ss_dssp             CEEEEEEEGGG-----TEEEEEESSTTCCEE
T ss_pred             CEEEEEEcCCC-----CEEEEEECCCCCcEE
Confidence            7 788887653     799999997 44433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.79  E-value=0.0011  Score=64.49  Aligned_cols=79  Identities=18%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCCEE
Q 013347          232 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMI  309 (444)
Q Consensus       232 d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l  309 (444)
                      ++ .|..||+.+++..........+..-...-.+.+++.++.|+.++.||.++++..........+  .-+.|..+|+..
T Consensus       465 ~G-~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VG-SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SE-EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cc-eEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            45 899999999987654443333222122224667888999999999999999984322222222  236666788754


Q ss_pred             EE
Q 013347          310 LL  311 (444)
Q Consensus       310 ~~  311 (444)
                      ++
T Consensus       544 v~  545 (582)
T 1flg_A          544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.76  E-value=0.037  Score=54.15  Aligned_cols=228  Identities=10%  Similarity=-0.002  Sum_probs=137.5

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|+.+ ..+.|+..++.........+....-..+.+++|.+.++.++.+.. .+.|+.++.+.......+          
T Consensus       319 ~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~----------  387 (619)
T 3s94_A          319 LLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV----------  387 (619)
T ss_dssp             EEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------
T ss_pred             EEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE----------
Confidence            44444 345677777775322222222222346788999987677776655 588888887632221111          


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec-CCCCeEEEEEecCCCeE-E
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR-GFGGLSILKWSPTGDYF-F  269 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l-~  269 (444)
                                     ... -..+..+++.+.++.|+.+....+.|.+.++.......+.. .-.....++++|....| +
T Consensus       388 ---------------~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~  451 (619)
T 3s94_A          388 ---------------TAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW  451 (619)
T ss_dssp             ---------------CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEE
T ss_pred             ---------------ECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEE
Confidence                           111 14667899987666666665444499999988665444443 34678999999974455 4


Q ss_pred             EEe-cCCcEEEEECCCCceecc-ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          270 AAK-FDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       270 ~~~-~d~~v~iwd~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      +-. ....|...++.......+ ...-...+.+++++++..|+.+-....++..+++..              ...+++.
T Consensus       452 tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG--------------~~~~~~~  517 (619)
T 3s94_A          452 TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG--------------TGRRVLV  517 (619)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS--------------CCCEEEE
T ss_pred             ecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC--------------CceEEEe
Confidence            432 236787778776544333 233457889999998888888877777787777532              1112221


Q ss_pred             -c-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC
Q 013347          348 -G-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       348 -~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                       . .....++++..  .+|+.+....     +.|...|..++.
T Consensus       518 ~~~l~~P~glav~~--~~ly~tD~~~-----~~I~~~~k~~g~  553 (619)
T 3s94_A          518 EDKIPHIFGFTLLG--DYVYWTDWQR-----RSIERVHKRSAE  553 (619)
T ss_dssp             ECCCCSSCCEEEET--TEEEEECTTS-----SCEEEEESSSCC
T ss_pred             ccCCCCcEEEEEEC--CEEEEeecCC-----CeEEEEEcCCCc
Confidence             1 11234566543  3666665443     678888877763

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.73  E-value=0.03  Score=52.45  Aligned_cols=60  Identities=13%  Similarity=0.249  Sum_probs=37.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe--c-----CCCCCeEEEEEeeC---CCeEEEEe
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--S-----DSQRDVKVLEWRPN---GGRSLSVG  162 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~--~-----~~~~~v~~l~~s~~---~~~ll~~~  162 (444)
                      .+.++|.|+|+++++-...+.|++++..+ +.......  .     ........|+|+|+   ++.|+++.
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            67999999999777643334687776543 33222211  1     12456789999995   46665554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.70  E-value=0.0027  Score=63.03  Aligned_cols=205  Identities=11%  Similarity=0.142  Sum_probs=110.9

Q ss_pred             EEEEecCCCeEEEEECCC-------------------eEEEEEccCCCCceeEEecC-CC-------CCeEEEEEeeCCC
Q 013347          104 GVSWHQHKHIVAFISGST-------------------QVIVRDYEDSGKDACILTSD-SQ-------RDVKVLEWRPNGG  156 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg-------------------~v~iw~~~~~~~~~~~~~~~-~~-------~~v~~l~~s~~~~  156 (444)
                      .++++|++.++++++.++                   .|.-+|..+ ++....+... |.       .++....+..+|+
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            578999888888887665                   388888887 6655554333 22       2333333444654


Q ss_pred             ---eEEEEecCCcEEEEecCCCCCcceeeccccccccccc-------cCCCCce--EEEEEeeccC-CCceEEEEEccCC
Q 013347          157 ---RSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS-------RGPGTRW--TLVDFLRSQN-GEQITALSWGPDG  223 (444)
Q Consensus       157 ---~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~-~~~v~~~~~sp~~  223 (444)
                         .++.+..+|.++++|..+++...........-...+.       ......+  .....+.+.. ...-..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               3666667899999998866654332211100000000       0000000  0000000000 0011235666665


Q ss_pred             CeEEEEe------------------------------------eCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCe
Q 013347          224 RYLASAS------------------------------------YESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDY  267 (444)
Q Consensus       224 ~~l~~~~------------------------------------~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~  267 (444)
                      ..++...                                    .++ .|..||+.+++...............+...+.+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g-~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~  471 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG-ALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNL  471 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE-EEEEEETTTTEEEEEEEESSSCCCCEEEETTTE
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc-eEEEEeCCCCcEEEEccCCCCCcCceeEeCCCE
Confidence            5554321                                    235 899999999987765544444443444556788


Q ss_pred             EEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCCEEE
Q 013347          268 FFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMIL  310 (444)
Q Consensus       268 l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~  310 (444)
                      ++.++.|+.|+.||.++++..........+  .-+.+..+|+..+
T Consensus       472 vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yv  516 (668)
T 1kv9_A          472 VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (668)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             EEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEE
Confidence            888999999999999999874322111211  2344456776433

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.58  E-value=0.01  Score=55.67  Aligned_cols=116  Identities=11%  Similarity=0.042  Sum_probs=66.9

Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCcc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI  374 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~  374 (444)
                      .....+..+|||+++++++-.+.++.++++......++..+............-.......+|.++|.-..+..-|    
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfid----  398 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFID----  398 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT----
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeec----
Confidence            4557789999999999998888888888875422111111111111112222222267789999999444444455    


Q ss_pred             ccceEEEEEcCCC----------CeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          375 YKGLIAIYDARRT----------PLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       375 ~d~~i~vwd~~~~----------~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                        ..|.-|++...          +++....++.-.||.....+=.-.|||+|
T Consensus       399 --SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~  448 (638)
T 3sbq_A          399 --SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKW  448 (638)
T ss_dssp             --TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCE
T ss_pred             --ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccE
Confidence              89999998752          34433334333455333223334456665

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.57  E-value=0.042  Score=49.64  Aligned_cols=59  Identities=7%  Similarity=-0.056  Sum_probs=37.4

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeE------EecCCCCCeEEEEEeeC---CCeEEEEe
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI------LTSDSQRDVKVLEWRPN---GGRSLSVG  162 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~------~~~~~~~~v~~l~~s~~---~~~ll~~~  162 (444)
                      .+.++|.|+|+.|.++...|.|++++.+  +.....      ...........|+|+|+   ++.++++.
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            6789999999934445678999888753  221110      11122346789999995   46665553

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.54  E-value=0.043  Score=48.99  Aligned_cols=232  Identities=15%  Similarity=0.194  Sum_probs=121.9

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec--CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~--~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      ..+.++.|++ ++.++. +..+.  |+...+.++.-.....  .+.+.+..+.+.++ +.+++++.++.|  |.....+ 
T Consensus        80 ~~~~~i~~~~-~~~~~~-g~~g~--i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~g~v--~~S~DgG-  151 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWIV-GEPPI--MLHTTDGGQSWSQIPLDPKLPGSPRLIKALGN-GSAEMITNVGAI--YRTKDSG-  151 (327)
T ss_dssp             CEEEEEEEET-TEEEEE-EETTE--EEEESSTTSSCEECCCCTTCSSCEEEEEEEET-TEEEEEETTCCE--EEESSTT-
T ss_pred             ccEEEEEecC-CeEEEE-ECCCe--EEEECCCCCCceECccccCCCCCeEEEEEECC-CCEEEEeCCccE--EEEcCCC-
Confidence            3588899986 454444 45664  3444443433332211  23456788888777 566666666654  3222111 


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v  256 (444)
                                          ..|.....  .. ...+..+.+.+++++++.+. .+...+-+|-....-..+ ......+
T Consensus       152 --------------------~tW~~~~~--~~-~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~  207 (327)
T 2xbg_A          152 --------------------KNWQALVQ--EA-IGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRL  207 (327)
T ss_dssp             --------------------SSEEEEEC--SC-CCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCE
T ss_pred             --------------------CCCEEeec--CC-CcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCcc
Confidence                                23433321  22 25788999999988776554 441333333211112222 2234678


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccc----cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~----~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      ..+++.++++.++ ++.+|.+++.+...++. ..+.    .....+.++.+.+++..++++..  +.+  +.-.+.    
T Consensus       208 ~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~--g~i--~~S~Dg----  278 (327)
T 2xbg_A          208 HNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA--GAL--LCSQDG----  278 (327)
T ss_dssp             EEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST--TCE--EEESST----
T ss_pred             ceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC--CeE--EEeCCC----
Confidence            8999999887654 45678877765333332 2221    12345889999998887775532  322  121111    


Q ss_pred             CCCcCCCCccccccccc-CCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          332 DAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                       +.    +...+..... +..+.++.|.++++++ +++.+      |.|.-++-
T Consensus       279 -G~----tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~~------G~i~~~~~  320 (327)
T 2xbg_A          279 -GQ----TWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQK------GILLRYVT  320 (327)
T ss_dssp             -TS----SCEECGGGTTSSSCCCEEEEEETTEEE-EECST------TEEEEECC
T ss_pred             -Cc----ccEEcCccCCCCCCeEEEEEECCCceE-EEcCC------ceEEEEcC
Confidence             11    1111211111 2257788887666544 44555      77666553

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.35  E-value=0.076  Score=47.51  Aligned_cols=240  Identities=12%  Similarity=0.066  Sum_probs=120.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-----ecCCCCCeEEEEEeeC---CCeEEEE-e--cCCcEEEE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-----TSDSQRDVKVLEWRPN---GGRSLSV-G--CKGGICIW  170 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-----~~~~~~~v~~l~~s~~---~~~ll~~-~--~dg~v~iw  170 (444)
                      .+.++|.|||+++++-...|.|++++... +......     ..........|+++|+   ++.|+++ +  .++.|.-|
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKT-GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCC-CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            67999999999777654489998887554 3322111     1123557899999985   3555443 2  23445555


Q ss_pred             ecCCCCCc-ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC------------CCeEE
Q 013347          171 APSYPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE------------SSSFT  237 (444)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------~~~i~  237 (444)
                      .+...... ..+..               .-.++..+..........++|.|||.+.++.+..            .+.|.
T Consensus       113 ~~~~~~~~~~~~~~---------------~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il  177 (347)
T 3das_A          113 LYDEKKPSGEQLGA---------------PDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKIL  177 (347)
T ss_dssp             EBCTTSCTTCCBCC---------------CEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred             EeCCCCcccccCCC---------------cEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence            54421100 00000               0012222221111245679999999877765421            12555


Q ss_pred             EEEcCCC--------CceeeecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCcee-------------------c
Q 013347          238 IWDVAQG--------LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSE-------------------P  289 (444)
Q Consensus       238 iwd~~~~--------~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~-------------------~  289 (444)
                      -.+....        ..............++|+|+|+++++-. .++.=.|--+..+...                   .
T Consensus       178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            5554422        1111111223456899999887665432 2322222222222211                   0


Q ss_pred             cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEe
Q 013347          290 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSY  368 (444)
Q Consensus       290 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~  368 (444)
                      +..+......++|. +|..+. +.-....+..+.+.....         .......+.+.. .+.+++..|||.++++..
T Consensus       258 ~~~~~~ap~G~~~~-~g~~~~-~~l~~~~l~~v~~~~~~~---------~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          258 WSTDEASPSGIAYA-EGSVWM-AGLRGERLWRIPLKGTAA---------AADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ECTTTCCEEEEEEE-TTEEEE-EESTTCSEEEEEEETTEE---------SSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCCCCCCcceEEE-cCceee-ccccCCEEEEEEecCCce---------ecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            11111244566665 344443 444446677776643210         011112233322 789999999998776654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.25  E-value=0.13  Score=48.13  Aligned_cols=159  Identities=11%  Similarity=0.135  Sum_probs=85.0

Q ss_pred             CCeEEEEEeeCCCeEEEEecCC-cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEee-ccCCCceEEEEEcc
Q 013347          144 RDVKVLEWRPNGGRSLSVGCKG-GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGP  221 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp  221 (444)
                      ...+.|+|.|+| .++++...+ .|++++... +....+....                  ..+. ......+..++|+|
T Consensus        27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~------------------~~~~~~~g~~Gllgia~~P   86 (454)
T 1cru_A           27 NKPHALLWGPDN-QIWLTERATGKILRVNPES-GSVKTVFQVP------------------EIVNDADGQNGLLGFAFHP   86 (454)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTT-CCEEEEEECT------------------TCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEcCCC-cEEEEEcCCCEEEEEECCC-CcEeEEecCC------------------ccccccCCCCceeEEEECC
Confidence            356799999996 566666664 687776542 2111111100                  0000 01135788999999


Q ss_pred             C---CCeEEEEeeC------------CCeEEEEEcCCCC-----ceeee---c--CCCCeEEEEEecCCCeEEEEecC--
Q 013347          222 D---GRYLASASYE------------SSSFTIWDVAQGL-----GTPIR---R--GFGGLSILKWSPTGDYFFAAKFD--  274 (444)
Q Consensus       222 ~---~~~l~~~~~d------------~~~i~iwd~~~~~-----~~~~~---~--~~~~v~~~~~sp~~~~l~~~~~d--  274 (444)
                      +   +..|+.+...            ...|..|++....     ...+.   .  .......++|.|||++.++.+..  
T Consensus        87 df~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~  166 (454)
T 1cru_A           87 DFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGR  166 (454)
T ss_dssp             TTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTT
T ss_pred             CcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCC
Confidence            5   5555544321            1156666654321     11111   1  12457889999999877765431  


Q ss_pred             ------------------------------CcEEEEECCCC-----------ceecc-ccCCCceeEEEECCCCCEEEEE
Q 013347          275 ------------------------------GTFYLWETNTW-----------TSEPW-SSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       275 ------------------------------~~v~iwd~~~~-----------~~~~~-~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                                                    |.|.-++....           ....+ .+| .....++|+|+|++.++-
T Consensus       167 ~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d  245 (454)
T 1cru_A          167 NQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSE  245 (454)
T ss_dssp             TSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEE
T ss_pred             CCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEe
Confidence                                          34544554432           11112 133 346889999998877765


Q ss_pred             EcCCceEEEEE
Q 013347          313 FAGSLTLGSIH  323 (444)
Q Consensus       313 ~~~~~~~~~~~  323 (444)
                      ...+..+.+..
T Consensus       246 ~g~~~~dein~  256 (454)
T 1cru_A          246 QGPNSDDEINL  256 (454)
T ss_dssp             ECSSSCEEEEE
T ss_pred             cCCCCCeEEEE
Confidence            44444344333

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.06  E-value=0.1  Score=47.53  Aligned_cols=158  Identities=12%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             EEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCC---CCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS---QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       106 ~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~---~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      ..+.+|..++++ .++.||.-++.... ..+.+...+   -..|..+..+|+ +.+++..++..|.|-.+..+.....-.
T Consensus        27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~~~V~Vv~LP~~~~~~~~~  103 (452)
T 3pbp_A           27 FSSQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFNDNEIFVMEVPWGYSNVEDV  103 (452)
T ss_dssp             EEETTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTT-SSEEEEECSSEEEEEECCTTCSCCCCH
T ss_pred             EEEcCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCC-CCEEEEecCCeEEEEEecCccccCccc
Confidence            345567777665 46888888887533 333333332   236788999999 566677788899999887322111100


Q ss_pred             ccccccccccccCCCCceEEEEEeec-----cCCCceEEEEEcc---CCCeEEEEeeCCCeEEEEEcCCCCceee-e---
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRS-----QNGEQITALSWGP---DGRYLASASYESSSFTIWDVAQGLGTPI-R---  250 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp---~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~---  250 (444)
                      ..            ..... .+.++-     .....|..+.|+|   .+..|++-..|+ +|++||+......+. .   
T Consensus       104 ~~------------~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~-~Ir~yDl~~s~~~P~~L~k~  169 (452)
T 3pbp_A          104 SI------------QDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD-TITMFDILNSQEKPIVLNKP  169 (452)
T ss_dssp             HH------------HHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS-CEEEEETTCTTSCCEEESCC
T ss_pred             cc------------ccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC-EEEEEEcccCCCCCcchhcc
Confidence            00            00000 111111     1136899999999   455788889998 999999986432221 1   


Q ss_pred             ----c---CCCCeEEEEEecCCCeEEEEe--cCCcEEEE
Q 013347          251 ----R---GFGGLSILKWSPTGDYFFAAK--FDGTFYLW  280 (444)
Q Consensus       251 ----~---~~~~v~~~~~sp~~~~l~~~~--~d~~v~iw  280 (444)
                          +   ....|.+++|.+++-.|...+  ..|.|+-.
T Consensus       170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence                1   125688999999887776654  77877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.98  E-value=0.16  Score=44.39  Aligned_cols=153  Identities=10%  Similarity=0.063  Sum_probs=75.5

Q ss_pred             CCCeEEEEeeCC----CeEEEEEcCCCCceeeecCCC-CeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceeccc
Q 013347          222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG-GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWS  291 (444)
Q Consensus       222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~  291 (444)
                      +++.++.|+.++    ..+.+||+.+.+-..+..... .....+..-+++.++.|+.+     ..+.+||+.+.+...+.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~  191 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT  191 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence            677777776543    168899988876554433221 11111122267777777654     46899999887764432


Q ss_pred             cC---CCceeEEEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCE
Q 013347          292 ST---SGFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGER  363 (444)
Q Consensus       292 ~~---~~~v~~~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~  363 (444)
                      ..   ......+.+  +++.+++++...    ..++.++....           ....+..+.... ....+.+  ++++
T Consensus       192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~~--~~~i  256 (301)
T 2vpj_A          192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD-----------SWTTVTSMTTPRCYVGATVL--RGRL  256 (301)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred             CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC-----------cEEECCCCCCcccceeEEEE--CCEE
Confidence            11   111222222  455555554321    22333433211           111111111111 1122222  6777


Q ss_pred             EEEEecCCCccccceEEEEEcCCCCeE
Q 013347          364 LAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       364 l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ++.|+.++.. .-..+.+||+++++-.
T Consensus       257 ~v~GG~~~~~-~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          257 YAIAGYDGNS-LLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEECCBCSSS-BEEEEEEEETTTTEEE
T ss_pred             EEEcCcCCCc-ccccEEEEcCCCCeEE
Confidence            7777655321 1156889999876543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.90  E-value=0.15  Score=46.48  Aligned_cols=108  Identities=9%  Similarity=0.072  Sum_probs=75.1

Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce-------------eeec------CCCCeEEEEEecC---CCeEEE
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGT-------------PIRR------GFGGLSILKWSPT---GDYFFA  270 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~-------------~~~~------~~~~v~~~~~sp~---~~~l~~  270 (444)
                      .+..+..||+|++||..+..  .|.|-.+..+...             ...-      ...+|..+.|+|-   +..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            57889999999999998765  7999888733210             1111      2467999999994   568999


Q ss_pred             EecCCcEEEEECCCCce--ecc---------ccCCCceeEEEECCCCCEEEEEE-cCCceEEEE
Q 013347          271 AKFDGTFYLWETNTWTS--EPW---------SSTSGFVTGATWDPEGRMILLAF-AGSLTLGSI  322 (444)
Q Consensus       271 ~~~d~~v~iwd~~~~~~--~~~---------~~~~~~v~~~~~sp~g~~l~~~~-~~~~~~~~~  322 (444)
                      -..|+.|++||+.....  ..+         ......+.+++|..++-.|++.. ...+.++.+
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999999986321  111         12235688999999876666543 344566655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.84  E-value=0.029  Score=46.14  Aligned_cols=96  Identities=10%  Similarity=0.108  Sum_probs=62.8

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCC--------eEEEEEecCCCeEEEEecCCcEEEEECC
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG--------LSILKWSPTGDYFFAAKFDGTFYLWETN  283 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~--------v~~~~~sp~~~~l~~~~~d~~v~iwd~~  283 (444)
                      ..+..++|+|+|.+.++  .+| .+.-.+..+............        -.++.|.|+|.+.++  .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G-~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LND-KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETT-EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCC-eEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36779999999986655  666 777766655333222221122        378999999987776  56999888765


Q ss_pred             CCceeccc------c--CCCceeEEEECCCCCEEEEE
Q 013347          284 TWTSEPWS------S--TSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       284 ~~~~~~~~------~--~~~~v~~~~~sp~g~~l~~~  312 (444)
                      +.....+.      +  .=..+..+.|.|+|.+.++.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            43332221      0  11357999999999987765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.60  E-value=0.28  Score=42.92  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=39.8

Q ss_pred             CCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCC--eEEEEEecCCCeEEEEecC-------CcEEEEECCCCcee
Q 013347          222 DGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-------GTFYLWETNTWTSE  288 (444)
Q Consensus       222 ~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-------~~v~iwd~~~~~~~  288 (444)
                      +++.++.|+.++.    .+.+||+.+.+-..+.....+  -.+++. -+++.++.|+.+       ..+.+||+.+.+..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            6777778876531    578889887755444322211  112222 256666766542       35889999887664


Q ss_pred             c
Q 013347          289 P  289 (444)
Q Consensus       289 ~  289 (444)
                      .
T Consensus       187 ~  187 (302)
T 2xn4_A          187 Y  187 (302)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.59  E-value=0.42  Score=43.67  Aligned_cols=263  Identities=11%  Similarity=0.118  Sum_probs=149.7

Q ss_pred             CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          119 GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       119 ~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      .+..|.|.|+..+....+.- ...    -+.-.+|. ..+++--...+++|+|++++.....                  
T Consensus        46 ~~~~vvIiDl~~~~~~~rrp-i~A----dsAIMnP~-~~iiALrag~~lQiFnle~K~klks------------------  101 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRP-ISA----DSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA------------------  101 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEE-CCC----SEEEECSS-SSCEEEEETTEEEEEETTTTEEEEE------------------
T ss_pred             CCCeEEEEECCCCCcceecc-ccc----ceeeeCCC-CcEEEEecCCeEEEEchHHhhhhcc------------------
Confidence            33478888888743332221 111    23446787 5666666689999999985433222                  


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-CceeeecC-----CCCeEEEEEecCCCeEEEEe
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRG-----FGGLSILKWSPTGDYFFAAK  272 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~  272 (444)
                             +.-  ...|.-=.|-.+ +.|+..+..  .|+-|++... ....++..     ...|..-..+++.++++..+
T Consensus       102 -------~~~--~e~VvfWkWis~-~~l~lVT~t--aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~G  169 (494)
T 1bpo_A          102 -------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  169 (494)
T ss_dssp             -------EEC--SSCCCEEEEEET-TEEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEE
T ss_pred             -------eec--CCCceEEEecCC-CeEEEEcCC--eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEe
Confidence                   111  135555556433 455555544  7999999753 23333332     35677778889999885433


Q ss_pred             -------cCCcEEEEECCCCceeccccCCCceeEEEECCCC---CEEEEEEc--CCceEEEEEeecCCC---CcCCCcCC
Q 013347          273 -------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG---RMILLAFA--GSLTLGSIHFASKPP---SLDAHLLP  337 (444)
Q Consensus       273 -------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~  337 (444)
                             ..|.+.+|..+.+..+.+.+|......+.+.-+.   ..++.+..  ..+++.++++...+.   .+.....+
T Consensus       170 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd  249 (494)
T 1bpo_A          170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD  249 (494)
T ss_dssp             EEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE
T ss_pred             ecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee
Confidence                   2468999999988888888887766555443221   23333322  236788888754311   11111000


Q ss_pred             CCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCC
Q 013347          338 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  417 (444)
Q Consensus       338 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~  417 (444)
                      +..++   -...+-..++..|+....+.....-      |.|.+||++++..+...-     -..+.|...+-..    .
T Consensus       250 v~fpp---e~~~DFPvamqvs~kygviyviTK~------G~i~lyDleTgt~i~~nr-----Is~~~iF~t~~~~----~  311 (494)
T 1bpo_A          250 VFFPP---EAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMNR-----ISGETIFVTAPHE----A  311 (494)
T ss_dssp             CCCCT---TSTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEET----T
T ss_pred             eeCCc---ccccCceeEEEecccCCEEEEEecC------ceEEEEecccceeeeeec-----ccCCceEEecccC----C
Confidence            00000   0011234578888888888888887      999999999988773222     2233332222211    2


Q ss_pred             CCceEEEEeccceeeeeee
Q 013347          418 QGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       418 ~~~~l~~~~~~g~i~~~~~  436 (444)
                      .+++++|. ..|.|....+
T Consensus       312 ~~Gi~~Vn-r~GqVl~v~v  329 (494)
T 1bpo_A          312 TAGIIGVN-RKGQVLSVCV  329 (494)
T ss_dssp             TTEEEEEE-TTCEEEEEEE
T ss_pred             CCcEEEEc-cCceEEEEEE
Confidence            34556665 6677665544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.53  E-value=0.37  Score=42.21  Aligned_cols=152  Identities=9%  Similarity=-0.010  Sum_probs=75.6

Q ss_pred             CCCeEEEEeeC-C----CeEEEEEcCCCCceeeecCCC-Ce-EEEEEecCCCeEEEEec---------CCcEEEEECCCC
Q 013347          222 DGRYLASASYE-S----SSFTIWDVAQGLGTPIRRGFG-GL-SILKWSPTGDYFFAAKF---------DGTFYLWETNTW  285 (444)
Q Consensus       222 ~~~~l~~~~~d-~----~~i~iwd~~~~~~~~~~~~~~-~v-~~~~~sp~~~~l~~~~~---------d~~v~iwd~~~~  285 (444)
                      +++.++.|+.+ +    ..+.+||..+.+-..+..... .. .+++. -++++++.|+.         -..+.+||+.+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            67777777765 1    268899998876444322211 11 12222 26666676653         345889999988


Q ss_pred             ceeccccCC---CceeEEEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEE
Q 013347          286 TSEPWSSTS---GFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW  357 (444)
Q Consensus       286 ~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  357 (444)
                      +...+....   .....+.+  +++.+++++...    ..+..++....           ....+..+.... ....+.+
T Consensus       180 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~~  246 (306)
T 3ii7_A          180 TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN-----------EWKMVSPMPWKGVTVKCAAV  246 (306)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT-----------EEEECCCCSCCBSCCEEEEE
T ss_pred             eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC-----------cEEECCCCCCCccceeEEEE
Confidence            764433211   11122222  555555543221    12233332111           111111111111 1222333


Q ss_pred             CCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          358 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       358 spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                        ++++++.|+.++.. .-..+.+||+++++-.
T Consensus       247 --~~~i~v~GG~~~~~-~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          247 --GSIVYVLAGFQGVG-RLGHILEYNTETDKWV  276 (306)
T ss_dssp             --TTEEEEEECBCSSS-BCCEEEEEETTTTEEE
T ss_pred             --CCEEEEEeCcCCCe-eeeeEEEEcCCCCeEE
Confidence              67788888765322 2267899999886544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.49  E-value=0.45  Score=42.75  Aligned_cols=34  Identities=3%  Similarity=-0.100  Sum_probs=21.7

Q ss_pred             CCCCEEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347          359 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  392 (444)
Q Consensus       359 pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~  392 (444)
                      -++++++.|+.+.+...-..|.++++++++....
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            4778888888764321124577779998887643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.30  E-value=0.51  Score=41.38  Aligned_cols=152  Identities=8%  Similarity=0.037  Sum_probs=75.0

Q ss_pred             CCCeEEEEeeCC----CeEEEEEcCCCCceeeecCC---CCeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceec
Q 013347          222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGF---GGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEP  289 (444)
Q Consensus       222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~  289 (444)
                      +++.++.|+.++    ..+.+||..+.+-..+....   .....+.+  ++++++.|+.+     ..+.+||+.+.+...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            677777776432    26889998877544432221   11122222  56666777654     468999998877643


Q ss_pred             ccc---CCCceeEEEECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC
Q 013347          290 WSS---TSGFVTGATWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE  362 (444)
Q Consensus       290 ~~~---~~~~v~~~~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  362 (444)
                      +..   .......+.+  +++.+++++...    ..++.+++...           ....+..+.....-.+++. -+++
T Consensus       199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~-----------~W~~~~~~p~~r~~~~~~~-~~~~  264 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE-----------TWTFVAPMKHRRSALGITV-HQGR  264 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT-----------EEEECCCCSSCCBSCEEEE-ETTE
T ss_pred             CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC-----------cEEECCCCCCCccceEEEE-ECCE
Confidence            321   1111222333  555555554321    22334433211           1111111111111112222 2677


Q ss_pred             EEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          363 RLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       363 ~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      +++.|+.++.. .-..+.+||+++++-.
T Consensus       265 i~v~GG~~~~~-~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          265 IYVLGGYDGHT-FLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EEEECCBCSSC-BCCEEEEEETTTTEEE
T ss_pred             EEEEcCcCCCc-ccceEEEEcCCCCEEe
Confidence            77777755321 2257899999876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.30  E-value=0.37  Score=39.67  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             CCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCC
Q 013347          144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  223 (444)
                      ..+..++|+|+ +.|.++ .+|.+.-.+..+.....-..+.                   ..+-...-....++.|.|+|
T Consensus        41 ~~~~~laf~P~-G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~-------------------t~IG~~Gw~~F~a~~fD~~G   99 (236)
T 1tl2_A           41 SNFKFLFLSPG-GELYGV-LNDKIYKGTPPTHDNDNWMGRA-------------------KKIGNGGWNQFQFLFFDPNG   99 (236)
T ss_dssp             TTCSEEEECTT-SCEEEE-ETTEEEEESCCCSTTCCHHHHC-------------------EEEECSCGGGCSEEEECTTS
T ss_pred             ccceeEEECCC-ccEEEE-eCCeEEEECCCCCCcccccccc-------------------cEecccccccceEEEECCCC
Confidence            37789999998 456666 7776554443321111111110                   00100001225789999999


Q ss_pred             CeEEEEeeCCCeEEEEEcCCCCcee-------eec-CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec------
Q 013347          224 RYLASASYESSSFTIWDVAQGLGTP-------IRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------  289 (444)
Q Consensus       224 ~~l~~~~~d~~~i~iwd~~~~~~~~-------~~~-~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~------  289 (444)
                      .+.++  .|| .|.-++-.+.....       +-. .=..+..|.+.|+|.+.++.  |+.++-....++....      
T Consensus       100 ~LYav--~dG-~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~  174 (236)
T 1tl2_A          100 YLYAV--SKD-KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARAT  174 (236)
T ss_dssp             CEEEE--ETT-EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCE
T ss_pred             CEEEe--CCC-EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccc
Confidence            87776  667 88888764432221       111 11467899999999877666  7775443333222111      


Q ss_pred             cc--cCCCceeEEEECCCCCEEEEE
Q 013347          290 WS--STSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       290 ~~--~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      ..  ..-...+-+.|.|++.+.++.
T Consensus       175 ~~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          175 KIGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             EEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             eeccCCcceEEEEEECCCCcEEEEe
Confidence            11  112234557799999887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.74  E-value=2.6  Score=44.80  Aligned_cols=226  Identities=12%  Similarity=0.147  Sum_probs=128.8

Q ss_pred             CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCc
Q 013347          120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR  199 (444)
Q Consensus       120 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (444)
                      ..+|.|.|+..+....+.     .-..-+.-.+|. ..+++--...+++|||++++.......-                
T Consensus        47 ~~~vvIidl~~~~~~~rr-----pi~AdsAIMnP~-~~iiALrag~~lQiFnl~~k~klks~~~----------------  104 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR-----PISADSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKAHTM----------------  104 (1630)
T ss_pred             CceEEEEECCCCCCcccc-----cccchhhccCCC-cceEEEecCCeEEEeehHHhhhhccccc----------------
Confidence            347888888874322111     111123345787 5677766689999999985443322211                


Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeec-C----CCCeEEEEEecCCCeEEEEe-
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRR-G----FGGLSILKWSPTGDYFFAAK-  272 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~-~----~~~v~~~~~sp~~~~l~~~~-  272 (444)
                                 ...|.-=.|-.+ +.|+..+..  .|.-|++.... ...++. |    ...|..-..+++.++++..+ 
T Consensus       105 -----------~e~VvfWkWis~-~~l~lVT~~--aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi  170 (1630)
T 1xi4_A          105 -----------TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  170 (1630)
T ss_pred             -----------CCCceEEEecCC-CeeEEEcCC--eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEee
Confidence                       135555556433 445555544  79999996532 222222 1    35577777888898885433 


Q ss_pred             ------cCCcEEEEECCCCceeccccCCCceeEEEEC--CCCC-EEEEEE--cCCceEEEEEeecCCC---CcCCCcCCC
Q 013347          273 ------FDGTFYLWETNTWTSEPWSSTSGFVTGATWD--PEGR-MILLAF--AGSLTLGSIHFASKPP---SLDAHLLPV  338 (444)
Q Consensus       273 ------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~s--p~g~-~l~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~  338 (444)
                            ..|.+.+|..+.+..+.+.+|......+...  +... .++++.  ..++++.++.+...+.   .+.....++
T Consensus       171 ~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~  250 (1630)
T 1xi4_A          171 SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  250 (1630)
T ss_pred             ccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence                  3578999999887777788876665444442  2222 233222  1236788888754311   111111111


Q ss_pred             CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ..++  . ...+-..++..|+....+...+.-      |.|.+||+.++..+
T Consensus       251 ~~~~--~-~~~Dfpv~~~vs~k~g~iy~itk~------G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          251 FFPP--E-AQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCI  293 (1630)
T ss_pred             cCCc--c-cccCcceEEEeccccCEEEEEecC------ceEEEEecccchhh
Confidence            0000  0 011133467888887777777777      99999999998765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.41  E-value=3.3  Score=43.68  Aligned_cols=279  Identities=9%  Similarity=0.022  Sum_probs=144.3

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCc-----eeEEecCCCCCeEEEEEeeC----CCeEEEEec---CCcEEEE
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPN----GGRSLSVGC---KGGICIW  170 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~-----~~~~~~~~~~~v~~l~~s~~----~~~ll~~~~---dg~v~iw  170 (444)
                      .++++-.+| +|+.|+..|.-.+|.+...+..     ...-....-++|.+++....    ..+++++++   +|.+++.
T Consensus       330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l  408 (1158)
T 3ei3_A          330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII  408 (1158)
T ss_dssp             SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred             cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence            345444444 6777888887778887753221     11222245679999888542    246777665   4888887


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc---cCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG---PDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      .-..+-.  ....                    -.+.+  -..++.+...   ....+|+.+..+.  -.++.+......
T Consensus       409 r~Gi~~~--~~~~--------------------~~l~g--v~~iWtl~~~~~~~~~~yLvlS~~~~--T~Vl~i~~e~ve  462 (1158)
T 3ei3_A          409 RNGIGIH--EHAS--------------------IDLPG--IKGLWPLRSDPNRETDDTLVLSFVGQ--TRVLMLNGEEVE  462 (1158)
T ss_dssp             EESBCEE--EEEE--------------------ECCCS--CCEEEEECCCSSCSSCCEEEEEETTE--EEEEEEETTEEE
T ss_pred             ecCCCEE--EEEe--------------------ecCCC--ccEEEEEeecCCCCCCCEEEEECCCC--eEEEEEeCCccc
Confidence            6441111  0000                    01111  1344444432   2345666655543  356665332222


Q ss_pred             eeec--C--CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccc-cCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          248 PIRR--G--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       248 ~~~~--~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      ....  .  ...-..+.--.++ .++=.. ...|++.+...... ..+. .....|...+.+.  .+++.+. + +.+..
T Consensus       463 ev~~~gf~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g-~~l~~  536 (1158)
T 3ei3_A          463 ETELMGFVDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G-RALYY  536 (1158)
T ss_dssp             EECCTTCCSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T-TEEEE
T ss_pred             ccccccccCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C-CEEEE
Confidence            2211  1  1111111111222 343333 34578888765433 3333 3344576666553  4666664 2 45555


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCC------CCEEEEEec-CCCccccceEEEEEcCCCCeEEEEE
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS------GERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd------g~~l~~~~~-d~~~~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      +++.+.           ....+....-...|.++++.|.      ++++++|.. |      ++++|+++..-+.+....
T Consensus       537 fel~~~-----------~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d------~tv~I~sL~~l~~~~~~~  599 (1158)
T 3ei3_A          537 LQIHPQ-----------ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTD------ISARILKLPSFELLHKEM  599 (1158)
T ss_dssp             EEEETT-----------EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTT------TEEEEEETTTCCEEEEEE
T ss_pred             EEeeCC-----------ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCC------CEEEEEECCCCCeEEEEE
Confidence            555321           1111122222237899998863      479999986 6      999999998755442222


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                         +.+ ...+.++.+..-+   ...+|-+|..||.+..|.+..
T Consensus       600 ---L~~-~~~p~si~l~~~~---~~~~L~igl~dG~l~~~~~d~  636 (1158)
T 3ei3_A          600 ---LGG-EIIPRSILMTTFE---SSHYLLCALGDGALFYFGLNI  636 (1158)
T ss_dssp             ---CCS-SCCEEEEEEEEET---TEEEEEEEETTSEEEEEEECT
T ss_pred             ---CCC-CCCCcEEEEEEeC---CCcEEEEEeCCCeEEEEEEcC
Confidence               211 1234455444321   235788999999998887654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.30  E-value=1.4  Score=38.69  Aligned_cols=69  Identities=6%  Similarity=-0.116  Sum_probs=40.1

Q ss_pred             CCCeEEEEeeC----C---CeEEEEEcCCCCceeeecCCC-CeEEEEEecCCCeEEEEec-C-----CcEEEEECCCCce
Q 013347          222 DGRYLASASYE----S---SSFTIWDVAQGLGTPIRRGFG-GLSILKWSPTGDYFFAAKF-D-----GTFYLWETNTWTS  287 (444)
Q Consensus       222 ~~~~l~~~~~d----~---~~i~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~-d-----~~v~iwd~~~~~~  287 (444)
                      +++.++.|+.+    .   ..+.+||..+.+-..+..... .....+..-+++.++.|+. +     ..+.+||+.+.+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  177 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW  177 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence            66777777643    1   268899998775443322211 1111122236666777775 2     4689999998776


Q ss_pred             ecc
Q 013347          288 EPW  290 (444)
Q Consensus       288 ~~~  290 (444)
                      ..+
T Consensus       178 ~~~  180 (315)
T 4asc_A          178 KEL  180 (315)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.62  E-value=2.1  Score=37.29  Aligned_cols=152  Identities=10%  Similarity=0.002  Sum_probs=76.7

Q ss_pred             CCCeEEEEECC----CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC------CcEEEEecCCCCCcc
Q 013347          110 HKHIVAFISGS----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK------GGICIWAPSYPGNAA  179 (444)
Q Consensus       110 ~g~~la~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d------g~v~iw~~~~~~~~~  179 (444)
                      ++.+++.|+.+    ..+.+||..+. .-...........-.+++. -++..++.++.+      ..+.+||..+     
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~-----  127 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRT-----  127 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTT-----
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCC-----
Confidence            66677777644    56788888763 2111111111111112222 243444455543      4577777762     


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--------CeEEEEEcCCCCceeeec
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------SSFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------~~i~iwd~~~~~~~~~~~  251 (444)
                                        +.|.....+.... .....+.  -+++.++.|+.++        ..+.+||+.+.+-..+..
T Consensus       128 ------------------~~W~~~~~~p~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  186 (306)
T 3ii7_A          128 ------------------ESWHTKPSMLTQR-CSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP  186 (306)
T ss_dssp             ------------------TEEEEECCCSSCC-BSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC
T ss_pred             ------------------CceEeCCCCcCCc-ceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC
Confidence                              2344333222211 1122222  2667777776421        258899998876554433


Q ss_pred             CCCC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCceecc
Q 013347          252 GFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPW  290 (444)
Q Consensus       252 ~~~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~  290 (444)
                      ....  -.+++.. ++++++.|+.+     ..+.+||+.+.+...+
T Consensus       187 ~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          187 MIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             CSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             ccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence            2211  1122222 66667777653     4689999998776443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.41  E-value=2.3  Score=36.88  Aligned_cols=153  Identities=13%  Similarity=0.117  Sum_probs=78.4

Q ss_pred             CCCeEEEEECC-----CeEEEEEccCCCC--ceeEEecCCCCCeEEEEEeeCCCeEEEEecC-----CcEEEEecCCCCC
Q 013347          110 HKHIVAFISGS-----TQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYPGN  177 (444)
Q Consensus       110 ~g~~la~~~~d-----g~v~iw~~~~~~~--~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----g~v~iw~~~~~~~  177 (444)
                      ++++++.|+.+     ..+.+||..+...  -...........-.+++. -++..++.++.+     ..+.+||..    
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~----  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPN----  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT----
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCC----
Confidence            56777777644     4688888876320  222211111111112222 243334444433     356777765    


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC----CeEEEEEcCCCCceeeecCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES----SSFTIWDVAQGLGTPIRRGF  253 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~  253 (444)
                                         .+.|..+..+.... .....+.+  +++.++.|+.++    ..+.+||+.+.+-..+....
T Consensus       137 -------------------~~~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p  194 (301)
T 2vpj_A          137 -------------------IDQWSMLGDMQTAR-EGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA  194 (301)
T ss_dssp             -------------------TTEEEEEEECSSCC-BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS
T ss_pred             -------------------CCeEEECCCCCCCc-ccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC
Confidence                               22455444333221 12222322  677777777543    26889999887655443222


Q ss_pred             CC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCceecc
Q 013347          254 GG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPW  290 (444)
Q Consensus       254 ~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~  290 (444)
                      .+  -.+++. -++++++.|+.+     ..+.+||+.+.+...+
T Consensus       195 ~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          195 TKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             SCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             cccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence            11  112222 256677777664     4689999998776443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.27  E-value=3.8  Score=38.86  Aligned_cols=259  Identities=12%  Similarity=0.035  Sum_probs=138.6

Q ss_pred             CCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe--eCCCeEEEEecC-------CcEEEEecCCCCCcc
Q 013347          110 HKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCK-------GGICIWAPSYPGNAA  179 (444)
Q Consensus       110 ~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s--~~~~~ll~~~~d-------g~v~iw~~~~~~~~~  179 (444)
                      ||++|..-. .+..|...+++. .+...++.......+..+.|.  |+..++++.+..       |..  ..++..+.  
T Consensus       141 DGrylfiNdkan~RvAri~l~~-~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~--  215 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDI-MKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENS--  215 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT-TEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTE--
T ss_pred             eeEEEEEecCCCcceEEEECCc-EeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhh--
Confidence            678888766 566788888887 555566666778889999996  676777776653       221  11111111  


Q ss_pred             eeeccccccccccccCC-CCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC--------------CeEEEEE----
Q 013347          180 SVRSGAASFLGALSRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES--------------SSFTIWD----  240 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--------------~~i~iwd----  240 (444)
                       .  .   .+..+.... .-.|++.  +    ......+...++|++.++.+.+.              ..+.+++    
T Consensus       216 -y--~---~f~~iD~~tm~v~~Qv~--v----~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~i  283 (638)
T 3sbq_A          216 -Y--T---MYNAIDAETMEMAFQVI--V----DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAV  283 (638)
T ss_dssp             -E--E---EEEEEETTTCSEEEEEE--E----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHH
T ss_pred             -c--e---EEEEEcCCccEEEEEEE--c----CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHH
Confidence             1  0   000110000 0012221  1    12333444566666665554331              1244444    


Q ss_pred             ---------------------cCC----C-CceeeecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCC------ce
Q 013347          241 ---------------------VAQ----G-LGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTW------TS  287 (444)
Q Consensus       241 ---------------------~~~----~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~------~~  287 (444)
                                           .+.    + .......-......+.++|||++++.++ .+.++.++|.+.-      +.
T Consensus       284 e~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~  363 (638)
T 3sbq_A          284 EAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL  363 (638)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC
T ss_pred             HHHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc
Confidence                                 332    1 1112222234455788999999996554 5789999998742      11


Q ss_pred             -------eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEE----
Q 013347          288 -------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA----  356 (444)
Q Consensus       288 -------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----  356 (444)
                             .....-.......+|.++| ..+++.--+..+-.|++......+.+.-   -...+..+.-|-.+-.+.    
T Consensus       364 ~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~---~~~v~~k~dv~YqpGH~~~~~g  439 (638)
T 3sbq_A          364 ADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEK---VNYIKQKLDVHYQPGHLHASLC  439 (638)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCC---CCCEEEEEECSSCEEEEEETTT
T ss_pred             cCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCcc---CCeeeeccccccCCcccccCCC
Confidence                   0011234456788999999 6666766778888888753211010000   012223333333233332    


Q ss_pred             --ECCCCCEEEEEecCCCcc-------ccceEEEEEcCCCCe
Q 013347          357 --WDASGERLAVSYKGGDDI-------YKGLIAIYDARRTPL  389 (444)
Q Consensus       357 --~spdg~~l~~~~~d~~~~-------~d~~i~vwd~~~~~~  389 (444)
                        -.|||++|++...-+-++       .-..-++.|+...+.
T Consensus       440 et~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM  481 (638)
T 3sbq_A          440 ETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM  481 (638)
T ss_dssp             TSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred             ccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence              258999999988655433       124568999876554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.15  E-value=0.66  Score=46.09  Aligned_cols=154  Identities=9%  Similarity=0.007  Sum_probs=78.7

Q ss_pred             CCCeEEEEECC------CeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCccee
Q 013347          110 HKHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAASV  181 (444)
Q Consensus       110 ~g~~la~~~~d------g~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~~~  181 (444)
                      ++++++.|+.+      ..+.+||..+. .-...-.......-.+++...++..++.+|.+  +.+.+||..+.      
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~-~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~------  523 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR-EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE------  523 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTT-EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT------
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCC-cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC------
Confidence            77777777643      34677887753 11111000111111223332354555555554  36888887722      


Q ss_pred             eccccccccccccCCCCceEEEEE---eeccCCCceEEEEEccC-CCeEEEEeeCC------CeEEEEEcCCCC------
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDF---LRSQNGEQITALSWGPD-GRYLASASYES------SSFTIWDVAQGL------  245 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~-~~~l~~~~~d~------~~i~iwd~~~~~------  245 (444)
                                       .|..+..   +... .....++.+..+ ++.++.|+.+.      +.+.+||+.+..      
T Consensus       524 -----------------~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~  585 (695)
T 2zwa_A          524 -----------------IFKDVTPKDEFFQN-SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPIT  585 (695)
T ss_dssp             -----------------EEEECCCSSGGGGS-CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEE
T ss_pred             -----------------ceEEccCCCCCCCc-ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceE
Confidence                             3333221   1111 122234555555 67777776521      268999998887      


Q ss_pred             ceeeecC--CCC-eEEEEEecCCCeEEEEec--------CCcEEEEECCCCcee
Q 013347          246 GTPIRRG--FGG-LSILKWSPTGDYFFAAKF--------DGTFYLWETNTWTSE  288 (444)
Q Consensus       246 ~~~~~~~--~~~-v~~~~~sp~~~~l~~~~~--------d~~v~iwd~~~~~~~  288 (444)
                      ...+...  ... -.+++...++++++.|+.        ...+.+||+.+.+..
T Consensus       586 W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          586 VIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            2222221  111 112333334777777774        346999999987664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.14  E-value=2  Score=37.33  Aligned_cols=68  Identities=12%  Similarity=0.036  Sum_probs=40.6

Q ss_pred             CCCeEEEEeeCC------CeEEEEEcCCCCceeeecCCCC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCcee
Q 013347          222 DGRYLASASYES------SSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE  288 (444)
Q Consensus       222 ~~~~l~~~~~d~------~~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~  288 (444)
                      +++.++.|+.++      ..+.+||+.+.+-..+.....+  -.+++. -++++++.|+.+     ..+.+||+.+.+..
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence            667777776532      1588999987755443222111  112222 256777777654     46899999887764


Q ss_pred             cc
Q 013347          289 PW  290 (444)
Q Consensus       289 ~~  290 (444)
                      .+
T Consensus       234 ~~  235 (302)
T 2xn4_A          234 QV  235 (302)
T ss_dssp             EE
T ss_pred             eC
Confidence            43

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.62  E-value=3.3  Score=36.87  Aligned_cols=91  Identities=4%  Similarity=-0.117  Sum_probs=42.3

Q ss_pred             CCCeEEEEeeCC-----CeEEEEEc--CCCCceeeecC--C-CCeEEEEEecCCCeEEEEecC-----------------
Q 013347          222 DGRYLASASYES-----SSFTIWDV--AQGLGTPIRRG--F-GGLSILKWSPTGDYFFAAKFD-----------------  274 (444)
Q Consensus       222 ~~~~l~~~~~d~-----~~i~iwd~--~~~~~~~~~~~--~-~~v~~~~~sp~~~~l~~~~~d-----------------  274 (444)
                      +++.++.|+.++     ..+.+||+  .+.+-..+...  . ....+.+...++++++.|+.+                 
T Consensus       200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~  279 (357)
T 2uvk_A          200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE  279 (357)
T ss_dssp             TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred             CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence            667777766421     15777887  44433322221  1 111222223366777777632                 


Q ss_pred             -----CcEEEEECCCCceeccc---cCCCceeEEEECCCCCEEEEEEc
Q 013347          275 -----GTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFA  314 (444)
Q Consensus       275 -----~~v~iwd~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~  314 (444)
                           ..+.+||+.+.+...+.   .......+  ..-+++.+++++.
T Consensus       280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~  325 (357)
T 2uvk_A          280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGE  325 (357)
T ss_dssp             TCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEE
T ss_pred             cccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeee
Confidence                 25789999887654332   11111122  2346666666664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.50  E-value=3.5  Score=40.89  Aligned_cols=164  Identities=13%  Similarity=0.054  Sum_probs=82.7

Q ss_pred             CCCeEEEEeeCC-----CeEEEEEcCCCCceeeecCC-CC-eEEEEEecCCCeEEEEecCC--cEEEEECCCCceecccc
Q 013347          222 DGRYLASASYES-----SSFTIWDVAQGLGTPIRRGF-GG-LSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSS  292 (444)
Q Consensus       222 ~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~~-~~-v~~~~~sp~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~  292 (444)
                      +++.++.|+.++     +.+.+||..+.+-..+.... .. -.+++...+++.++.|+.++  .+.+||..+.+...+..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~  530 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP  530 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence            778888887543     25888998876544432221 11 12233324788888887654  79999999877643321


Q ss_pred             ------CCCceeEEEECCC-CCEEEEEEcCC------ceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEEC
Q 013347          293 ------TSGFVTGATWDPE-GRMILLAFAGS------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWD  358 (444)
Q Consensus       293 ------~~~~v~~~~~sp~-g~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s  358 (444)
                            ......++.+..+ ++.+++|+...      ..++.+++....+  ..   ......+.... ....-.+++..
T Consensus       531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w--~~---~~~W~~~~~~p~~~R~~~~~~~~  605 (695)
T 2zwa_A          531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA--TE---PITVIKKLQHPLFQRYGSQIKYI  605 (695)
T ss_dssp             SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS--SC---CEEEEEEEECGGGCCBSCEEEEE
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc--cc---ceEEEEcCCCCCCCcccceEEEe
Confidence                  2222233555655 55555554321      2344455432211  00   00011111110 00111122233


Q ss_pred             CCCCEEEEEecCCCc--cccceEEEEEcCCCCeE
Q 013347          359 ASGERLAVSYKGGDD--IYKGLIAIYDARRTPLI  390 (444)
Q Consensus       359 pdg~~l~~~~~d~~~--~~d~~i~vwd~~~~~~~  390 (444)
                      .++++++.|+.+.+.  ..-..+.+||+.+++-.
T Consensus       606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            347778887754321  12267999999986543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.31  E-value=3.9  Score=35.79  Aligned_cols=68  Identities=7%  Similarity=0.047  Sum_probs=40.1

Q ss_pred             CCCeEEEEeeC--C----CeEEEEEcCCCCceeeecCCCCe--EEEEEecCCCeEEEEec------CCcEEEEECCCCce
Q 013347          222 DGRYLASASYE--S----SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKF------DGTFYLWETNTWTS  287 (444)
Q Consensus       222 ~~~~l~~~~~d--~----~~i~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~  287 (444)
                      +++.++.|+.+  +    ..+.+||..+.+-..+.....+.  .+++. .++++++.|+.      -..+.+||+.+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            67777777764  1    15788898877554433222111  11222 36666677764      24699999998776


Q ss_pred             ecc
Q 013347          288 EPW  290 (444)
Q Consensus       288 ~~~  290 (444)
                      ..+
T Consensus       188 ~~~  190 (318)
T 2woz_A          188 KDL  190 (318)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.99  E-value=1.7  Score=37.87  Aligned_cols=68  Identities=10%  Similarity=-0.047  Sum_probs=41.1

Q ss_pred             CCCeEEEEeeCC----CeEEEEEcCCCCceeeecCCC--CeEEEEEecCCCeEEEEecC-----CcEEEEECCCCceecc
Q 013347          222 DGRYLASASYES----SSFTIWDVAQGLGTPIRRGFG--GLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPW  290 (444)
Q Consensus       222 ~~~~l~~~~~d~----~~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~~~  290 (444)
                      +++.++.|+.++    ..+.+||+.+.+-..+.....  .-.+++.. ++++++.|+.+     ..+.+||+.+.+...+
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            677777776542    268899988775443322111  11122222 66677777654     5699999998776443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.77  E-value=11  Score=39.69  Aligned_cols=223  Identities=13%  Similarity=0.032  Sum_probs=106.3

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC------CeEEEEec-CCcEEEEecCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG------GRSLSVGC-KGGICIWAPSY  174 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~------~~ll~~~~-dg~v~iw~~~~  174 (444)
                      |..++.+  +.+++.++ .+.+.++.++. +.........-...|.|+++.|..      ..++++.. |++|+|+++..
T Consensus       516 I~~As~n--~~~vvva~-g~~l~~fel~~-~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          516 ISVASCN--SSQVVVAV-GRALYYLQIHP-QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCEEEEC--SSEEEEEE-TTEEEEEEEET-TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeC--CCEEEEEE-CCEEEEEEeeC-CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            4444443  34566664 67888888875 332222223346689999997642      34555554 89999999973


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc--cCCCeEEEEeeCCCeEEEEEcC--CCCcee--
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRYLASASYESSSFTIWDVA--QGLGTP--  248 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~d~~~i~iwd~~--~~~~~~--  248 (444)
                      -....                       ...+...  ..+.++.+.  ....+|..|-.|| .+..+.+.  ++....  
T Consensus       592 l~~~~-----------------------~~~L~~~--~~p~si~l~~~~~~~~L~igl~dG-~l~~~~~d~~tg~l~d~r  645 (1158)
T 3ei3_A          592 FELLH-----------------------KEMLGGE--IIPRSILMTTFESSHYLLCALGDG-ALFYFGLNIETGLLSDRK  645 (1158)
T ss_dssp             CCEEE-----------------------EEECCSS--CCEEEEEEEEETTEEEEEEEETTS-EEEEEEECTTTCCEEEEE
T ss_pred             CCeEE-----------------------EEECCCC--CCCcEEEEEEeCCCcEEEEEeCCC-eEEEEEEcCCCCccccce
Confidence            21111                       0111110  122333322  2335677777787 77666554  333221  


Q ss_pred             -eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce-eEEEECCCC--CEEEEEEcCCceEEEEEe
Q 013347          249 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV-TGATWDPEG--RMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       249 -~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v-~~~~~sp~g--~~l~~~~~~~~~~~~~~~  324 (444)
                       ..-...++.-..+...+..-+.+..+.-..+|-.+ ++.....-....+ ....|+...  .-++...++  .+.+..+
T Consensus       646 ~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~~~--~LrI~~i  722 (1158)
T 3ei3_A          646 KVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNS--TLTIGTI  722 (1158)
T ss_dssp             EEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEECSS--CEEEEEE
T ss_pred             eEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEcCC--ceEEEEe
Confidence             11123455444454444433333335555555433 2322111111122 333454321  234434333  3455544


Q ss_pred             ecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEe
Q 013347          325 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY  368 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~  368 (444)
                      .+.           ..-.++++.-...+..++++|+.+.++.+.
T Consensus       723 ~~~-----------~~~~~~~ipL~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          723 DEI-----------QKLHIRTVPLYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             CCS-----------SSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred             ccc-----------CCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence            221           111223333333577888888877665544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.65  E-value=6.5  Score=36.65  Aligned_cols=53  Identities=15%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             eEEEEEecCCC-eEEEEECCCeEEEEEccCCCC--ceeE----Eec----CCCCCeEEEEEeeC
Q 013347          102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGK--DACI----LTS----DSQRDVKVLEWRPN  154 (444)
Q Consensus       102 v~~~~~sp~g~-~la~~~~dg~v~iw~~~~~~~--~~~~----~~~----~~~~~v~~l~~s~~  154 (444)
                      -+.|+|.|||. .|+++...|.|++++.+....  ...-    +..    ........|+|+|+
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            67899999996 455567899999987542111  1111    111    12457889999985

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.57  E-value=6.7  Score=36.57  Aligned_cols=29  Identities=17%  Similarity=0.157  Sum_probs=23.8

Q ss_pred             CeEEEEEeeCCC-eEEEEecCCcEEEEecC
Q 013347          145 DVKVLEWRPNGG-RSLSVGCKGGICIWAPS  173 (444)
Q Consensus       145 ~v~~l~~s~~~~-~ll~~~~dg~v~iw~~~  173 (444)
                      ..+.|+|.||+. +++++-..|.|++++.+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            467899999975 68888889999998754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=91.44  E-value=6.7  Score=34.20  Aligned_cols=69  Identities=10%  Similarity=0.026  Sum_probs=40.6

Q ss_pred             cCCCeEEEEeeCC-----CeEEEEEcCCCCceeeecCCCC--eEEEEEecCCCeEEEEecC-----CcEEEEECCCCcee
Q 013347          221 PDGRYLASASYES-----SSFTIWDVAQGLGTPIRRGFGG--LSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSE  288 (444)
Q Consensus       221 p~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~~~~~d-----~~v~iwd~~~~~~~  288 (444)
                      .+++.++.|+.+.     ..+.+||+.+.+-..+.....+  -.+++. -+++.++.|+.+     ..+.+||+.+.+..
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            4677777776421     2589999988765444322111  112222 256777777653     35778999887764


Q ss_pred             cc
Q 013347          289 PW  290 (444)
Q Consensus       289 ~~  290 (444)
                      .+
T Consensus       236 ~~  237 (318)
T 2woz_A          236 VM  237 (318)
T ss_dssp             EC
T ss_pred             EC
Confidence            43

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.73  E-value=7.8  Score=33.70  Aligned_cols=157  Identities=4%  Similarity=-0.019  Sum_probs=74.7

Q ss_pred             EEccCCCeEEEEee----CC------CeEEEEEcCCCCceeeecCCCCe--EEEEEecCCCeEEEEecC--------CcE
Q 013347          218 SWGPDGRYLASASY----ES------SSFTIWDVAQGLGTPIRRGFGGL--SILKWSPTGDYFFAAKFD--------GTF  277 (444)
Q Consensus       218 ~~sp~~~~l~~~~~----d~------~~i~iwd~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~~~~~d--------~~v  277 (444)
                      ....+++.++.|+.    ++      ..+.+||..+.+-..+.....+-  .+++.. +++.++.|+.+        ..+
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence            33457788888874    11      03778888877544332222111  122222 56666777632        468


Q ss_pred             EEEECCCCceeccccCCC--ceeEEEECCCCCEEEEEEcCC-----ceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          278 YLWETNTWTSEPWSSTSG--FVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                      .+||..+.+...+.....  .-.+++. -+++.+++++..+     ..++.++....           ....+..+....
T Consensus       120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-----------~W~~~~~~p~~r  187 (315)
T 4asc_A          120 MCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF-----------EWKELAPMQTAR  187 (315)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT-----------EEEECCCCSSCC
T ss_pred             EEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC-----------eEEECCCCCCch
Confidence            999999876544332111  1112222 3555555554311     12333332111           111111111111


Q ss_pred             -ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          351 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       351 -~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                       .-..+.+  ++++++.|+.+... .-..+.+||+.+++-.
T Consensus       188 ~~~~~~~~--~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          188 SLFGATVH--DGRIIVAAGVTDTG-LTSSAEVYSITDNKWA  225 (315)
T ss_dssp             BSCEEEEE--TTEEEEEEEECSSS-EEEEEEEEETTTTEEE
T ss_pred             hceEEEEE--CCEEEEEeccCCCC-ccceEEEEECCCCeEE
Confidence             1112222  67788888765321 1146889999886543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.56  E-value=0.82  Score=40.62  Aligned_cols=26  Identities=4%  Similarity=0.035  Sum_probs=22.0

Q ss_pred             CCCeEEEEecCCcEEEEECCCCceec
Q 013347          264 TGDYFFAAKFDGTFYLWETNTWTSEP  289 (444)
Q Consensus       264 ~~~~l~~~~~d~~v~iwd~~~~~~~~  289 (444)
                      .+..+++|+.++++...|+++|+...
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEE
Confidence            35578899999999999999999854

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.72  E-value=12  Score=34.35  Aligned_cols=193  Identities=12%  Similarity=0.166  Sum_probs=115.5

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      -+.-.+|..+.||.-. ..++.|+|+++..+....   .....|.-=.|-.+  ..++--.+..|+-|+++....+..+.
T Consensus        69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~---~~~e~VvfWkWis~--~~l~lVT~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---TMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE---ECSSCCCEEEEEET--TEEEEECSSEEEEEESSSSCCCEEEE
T ss_pred             ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce---ecCCCceEEEecCC--CeEEEEcCCeeEEecccCCCCchhhe
Confidence            3566789888888765 789999999974222222   33456777788766  34555578899999997533333322


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-------CCCeEEEEEcCCCCceeeecCCCC
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-------ESSSFTIWDVAQGLGTPIRRGFGG  255 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------d~~~i~iwd~~~~~~~~~~~~~~~  255 (444)
                      ....                  .+   ....|.....+++.++++..+-       .| .+.+|..+.+....+.+|...
T Consensus       143 dR~~------------------~L---~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G-~mQLYS~er~~sQ~ieGhaa~  200 (494)
T 1bpo_A          143 DRHS------------------SL---AGCQIINYRTDAKQKWLLLTGISAQQNRVVG-AMQLYSVDRKVSQPIEGHAAS  200 (494)
T ss_dssp             ECCG------------------GG---TTCEEEEEEECTTSSEEEEEEEEEETTEEEE-EEEEEESTTCCEEEECCSEEE
T ss_pred             ecch------------------hc---ccceEEEEEECCCCCeEEEEeecccCCcccc-eEEEeeccccccchheeeeee
Confidence            2100                  01   1246777888888888775432       34 899999998877778777544


Q ss_pred             eEEEEEecC---CCeEEEEec---CCcEEEEECCCC---ce------e--ccc--cCCCceeEEEECCCCCEEEEEEcCC
Q 013347          256 LSILKWSPT---GDYFFAAKF---DGTFYLWETNTW---TS------E--PWS--STSGFVTGATWDPEGRMILLAFAGS  316 (444)
Q Consensus       256 v~~~~~sp~---~~~l~~~~~---d~~v~iwd~~~~---~~------~--~~~--~~~~~v~~~~~sp~g~~l~~~~~~~  316 (444)
                      ...+...-+   .+.++.+..   .+++++.++...   ..      .  .+.  ......-++..++.-..++.-. .-
T Consensus       201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT-K~  279 (494)
T 1bpo_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KY  279 (494)
T ss_dssp             EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE-TT
T ss_pred             eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe-cC
Confidence            433333211   123343333   378999998543   11      0  011  1233445677777766665442 33


Q ss_pred             ceEEEEEe
Q 013347          317 LTLGSIHF  324 (444)
Q Consensus       317 ~~~~~~~~  324 (444)
                      +.++.+++
T Consensus       280 G~i~lyDl  287 (494)
T 1bpo_A          280 GYIHLYDL  287 (494)
T ss_dssp             SEEEEEET
T ss_pred             ceEEEEec
Confidence            66666665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.50  E-value=25  Score=35.12  Aligned_cols=188  Identities=9%  Similarity=0.005  Sum_probs=103.4

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe-cC----CCCCeEEEEEeeCCCeEEEEecCCcEEEEecC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-SD----SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~-~~----~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~  173 (444)
                      ...|.++.-..+|++.+ |+ ++-+..++..+ ++...... ..    ....|.++.-.++ +.|.++...+.+.+++..
T Consensus       372 ~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~i~~d~~-g~lWigT~~~Gl~~~~~~  447 (758)
T 3ott_A          372 HNRIRHIYEDKEQQLWI-AT-DGSINRYDYAT-RQFIHYNIVDNTGTYNTNWTYYIFEDTA-GQLWISTCLGGIFVVDKH  447 (758)
T ss_dssp             CSCEEEEEECTTSCEEE-EE-TTEEEEEETTT-TEEEEEEEECCC--CBSSSEEEEEECTT-SEEEEEESSSCEEEEEHH
T ss_pred             CCceEEEEECCCCCEEE-Ee-CCcHhhcCcCC-CcEEEeecCCCcCCCCCceEEEEEEcCC-CCEEEEECCCceEEEccc
Confidence            34689998888887654 44 45688888875 22222111 11    1245788877666 567777666778888754


Q ss_pred             CC--CCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec
Q 013347          174 YP--GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR  251 (444)
Q Consensus       174 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~  251 (444)
                      ..  .....+...                .......+-....|.++...++|+.-+.++..+ -|..+|..+++...+..
T Consensus       448 ~~~~~~~~~~~~~----------------~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~-Gl~~~d~~~~~~~~~~~  510 (758)
T 3ott_A          448 KLMQSTSGQYIAE----------------QNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNK-GIDKINPRTREVTKLFA  510 (758)
T ss_dssp             HHHHCCSSEEECS----------------EEECGGGTCSCSCEEEEEECTTSCEEEEETTCS-SEEEEETTTTEEEEECT
T ss_pred             cccccCCcceecc----------------cccccccccccceeeeEEEcCCCCEEEEccCCC-CcEEEeCCCCceEEecC
Confidence            10  000000000                000000111124688999888888665333333 48889987765544322


Q ss_pred             C----CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--c-CCCceeEEEECCCCCEEE
Q 013347          252 G----FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S-TSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       252 ~----~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~sp~g~~l~  310 (444)
                      .    ...+.++....+|++.+. +.. -+..||..+++...+.  + ....+.++... +|.+.+
T Consensus       511 ~~~~~~~~~~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi  573 (758)
T 3ott_A          511 DELTGEKSPNYLLCDEDGLLWVG-FHG-GVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV  573 (758)
T ss_dssp             TTSCGGGCEEEEEECTTSCEEEE-ETT-EEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE
T ss_pred             CCcCCCcccceEEECCCCCEEEE-ecC-ceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE
Confidence            1    245778888878876654 444 4888998776654332  1 12457777664 565444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=87.11  E-value=36  Score=36.62  Aligned_cols=153  Identities=14%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeec
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      +.-.+|..+.||.-. ..++.|+|+++..+....   .....|.-=.|-.+  ..++--++..|.-|++.....+..+..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~---~~~e~VvfWkWis~--~~l~lVT~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH---TMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhccc---ccCCCceEEEecCC--CeeEEEcCCeEEEeccCCCCccHHHHh
Confidence            455678888887754 789999999974333222   33456777777655  345555678899999974333332221


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee-------CCCeEEEEEcCCCCceeeecCCCCe
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY-------ESSSFTIWDVAQGLGTPIRRGFGGL  256 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-------d~~~i~iwd~~~~~~~~~~~~~~~v  256 (444)
                      .                  -..+.   ...|.....+++.++++..+-       .| .+.+|..+.+....+.+|.+..
T Consensus       144 R------------------~~~L~---~~QIinY~~d~~~kW~~l~gi~~~~~~v~G-~mQLyS~er~~sQ~iegha~~F  201 (1630)
T 1xi4_A          144 R------------------HSSLA---GCQIINYRTDAKQKWLLLTGISAQQNRVVG-AMQLYSVDRKVSQPIEGHAASF  201 (1630)
T ss_pred             c------------------chhcc---cCeeEEeeeCCCCCeEEEEeeccCCCcccc-eeeeeecccccchhhhHhHhhh
Confidence            1                  01121   246777778888888775542       34 8999999988777777765444


Q ss_pred             EEEEEe--c-CCCeEEEEec---CCcEEEEECCC
Q 013347          257 SILKWS--P-TGDYFFAAKF---DGTFYLWETNT  284 (444)
Q Consensus       257 ~~~~~s--p-~~~~l~~~~~---d~~v~iwd~~~  284 (444)
                      ..+...  + ....++.+..   .++++|.++..
T Consensus       202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             heeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence            333332  1 1223332221   36899998854

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.29  E-value=28  Score=34.64  Aligned_cols=278  Identities=9%  Similarity=-0.053  Sum_probs=141.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCC-CceeEEecC------CCCCeEEEEEeeCCCeEEEEecCCcEEEEec
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSD------SQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~-~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~  172 (444)
                      ..|.++.-..+|.+.+ |+.+| +..++..+.. .....+...      ....|.++.-.++| .|-++. ++.+..|+.
T Consensus       324 ~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt-~~GL~~~~~  399 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWIAT-DGSINRYDY  399 (758)
T ss_dssp             CBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEEEE-TTEEEEEET
T ss_pred             ceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEEEe-CCcHhhcCc
Confidence            3588888888887655 34554 5555544311 111111110      12458888777774 455555 567888887


Q ss_pred             CCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCC-----Cce
Q 013347          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-----LGT  247 (444)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~-----~~~  247 (444)
                      .+... ..+...                   ..........|.++...++|+ |..|+..+ -+.++|..+.     ...
T Consensus       400 ~~~~~-~~~~~~-------------------~~~~~~~~~~v~~i~~d~~g~-lWigT~~~-Gl~~~~~~~~~~~~~~~~  457 (758)
T 3ott_A          400 ATRQF-IHYNIV-------------------DNTGTYNTNWTYYIFEDTAGQ-LWISTCLG-GIFVVDKHKLMQSTSGQY  457 (758)
T ss_dssp             TTTEE-EEEEEE-------------------CCC--CBSSSEEEEEECTTSE-EEEEESSS-CEEEEEHHHHHHCCSSEE
T ss_pred             CCCcE-EEeecC-------------------CCcCCCCCceEEEEEEcCCCC-EEEEECCC-ceEEEccccccccCCcce
Confidence            63211 111000                   000000124688888877776 44466544 4888886531     111


Q ss_pred             ----eeec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecccc----CCCceeEEEECCCCCEEEEEEcC
Q 013347          248 ----PIRR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS----TSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       248 ----~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                          ....    ....|.++...++|++.+.++..+-|..+|..+++...+..    ....+.++....+|.+.+.+ ..
T Consensus       458 ~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~  536 (758)
T 3ott_A          458 IAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HG  536 (758)
T ss_dssp             ECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TT
T ss_pred             ecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cC
Confidence                0011    12358899988888866644444568889998876644321    12457888888888876643 32


Q ss_pred             CceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEe
Q 013347          316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  395 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~  395 (444)
                       + +..++....  .+    ....   ...+. ...|.++... +|++.++ +..       -|..||.++.+....   
T Consensus       537 -G-l~~~~~~~~--~~----~~~~---~~gl~-~~~i~~i~~~-~g~lWi~-t~~-------Gl~~~~~~~~~~~~~---  592 (758)
T 3ott_A          537 -G-VMRINPKDE--SQ----QSIS---FGSFS-NNEILSMTCV-KNSIWVS-TTN-------GLWIIDRKTMDARQQ---  592 (758)
T ss_dssp             -E-EEEECC--C--CC----CBCC---CCC----CCEEEEEEE-TTEEEEE-ESS-------CEEEEETTTCCEEEC---
T ss_pred             -c-eEEEecCCC--ce----EEec---ccCCC-ccceEEEEEC-CCCEEEE-CCC-------CeEEEcCCCceeEEe---
Confidence             2 333332111  00    0000   00111 1257777664 6655444 433       388889887665421   


Q ss_pred             eeeeCCCCCCcceeee-eCCCCCCCceEEEEeccceeeeeeee
Q 013347          396 GFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       396 ~~~~~~~~~i~~v~~s-pdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                         .-....+....+. ++|      .|-+|-.+|.+.|-|-.
T Consensus       593 ---~~~~~~~~~~~~~~~~G------~l~fG~~~Gl~~f~p~~  626 (758)
T 3ott_A          593 ---NMTNKRFTSLLFDPKED------CVYLGGADGFGISHSNL  626 (758)
T ss_dssp             -----CCCCCSEEEEETTTT------EEEEECBSEEEEEEC--
T ss_pred             ---cCCCCceeeeEEECCCC------cEEEecCCceEEEChhh
Confidence               1111222222222 233      35677788888776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	444
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 8e-09
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 214 ITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAA 271
           I A+ + P+G   A+ S +++   F +    + +         G++ + +S +G    A 
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 272 KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL 310
             D    +W+          +     V+      +G  + 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 28/176 (15%)

Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKG 165
                    F+SG+     + + D  +  C  T +  + D+  + + PNG    +     
Sbjct: 190 LSLAPDTRLFVSGACDASAKLW-DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248

Query: 166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY 225
              ++                               L+ +        IT++S+   GR 
Sbjct: 249 TCRLFDLRAD------------------------QELMTYSHDNIICGITSVSFSKSGRL 284

Query: 226 LASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLW 280
           L +   +  +  +WD  +     +  G    +S L  +  G       +D    +W
Sbjct: 285 LLAGY-DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 15/136 (11%), Positives = 36/136 (26%), Gaps = 27/136 (19%)

Query: 105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK 164
           + +  + +  A  S      + D     +       +    +  + +  +G   L+    
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291

Query: 165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR 224
               +W                                   L   +   ++ L    DG 
Sbjct: 292 FNCNVW---------DALKA----------------DRAGVLAGHDNR-VSCLGVTDDGM 325

Query: 225 YLASASYESSSFTIWD 240
            +A+ S++ S   IW+
Sbjct: 326 AVATGSWD-SFLKIWN 340

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR---GFGGLSILKWSPTGDYF 268
           E I+  +W  D   +A     +    I++ +      +       G ++ + W+P  +  
Sbjct: 8   EPISCHAWNKDRTQIAICP-NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66

Query: 269 FAAKFDGTFYLWETNTWTSEPW 290
                D   Y+W     T +P 
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPT 88

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 259 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMIL 310
             W+           +   +++E +             +G VTG  W P+   I+
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 8e-07
 Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 8/201 (3%)

Query: 82  SHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD 141
           +  +  +     V               ++      S S    VR +  + K+      +
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183

Query: 142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWT 201
            +  V+ + W P    S      G     +        S      S    +     +   
Sbjct: 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS-----GSRDKTIKMWDVSTGM 238

Query: 202 LVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-LGTPIRRGFGGLSILK 260
            +  L   +   +  + +   G+++ S + +  +  +WD         +      ++ L 
Sbjct: 239 CLMTLVGHDN-WVRGVLFHSGGKFILSCA-DDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296

Query: 261 WSPTGDYFFAAKFDGTFYLWE 281
           +  T  Y      D T  +WE
Sbjct: 297 FHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 11/206 (5%)

Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG 166
              +   +   S    + + + +      C+ T    R+   +      G  ++      
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 165

Query: 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL 226
                        +        +  +S  P + ++ +                G  G +L
Sbjct: 166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG-----SETKKSGKPGPFL 220

Query: 227 ASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW 285
            S S + +   +WDV+ G+      G    +  + +   G +  +   D T  +W+    
Sbjct: 221 LSGSRDKT-IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 279

Query: 286 TS-EPWSSTSGFVTGATWDPEGRMIL 310
              +  ++   FVT   +      ++
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVV 305

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-06
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG----GLSILKWSPTGD-- 266
             T LS+ P    +A    +S+     D       P+ +  G     ++ +K+SP     
Sbjct: 19  FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 267 YFFAAKFDGTFYLWETNT---------WTSEPWSSTSGFVTGATWDPEGRM 308
           Y  +    G   +W                  +   +G ++  +WD EGR 
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 216 ALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG 275
           +L +   G++  S   ++     W    G      +    +     S    Y      D 
Sbjct: 270 SLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328

Query: 276 TFYLWE 281
              ++E
Sbjct: 329 KATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAK 272
           QI +L + P G +LA     S+   +                 LS+ K++  G +F +  
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL-KFAYCGKWFVSTG 284

Query: 273 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 310
            D     W T    S   S  S  V       + + I+
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 8/86 (9%)

Query: 211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF------GGLSILKWSPT 264
           GE + A++     R++ +         +WD++                   +   K  P 
Sbjct: 51  GEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108

Query: 265 GDYFFAAKFDGTFYLWETNTWTSEPW 290
           G          T  +W+    T    
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIK 134

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 27/187 (14%)

Query: 107 WHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-----QRDVKVLEWRPNGGRSLSV 161
                  +A  S    V V D E       + + +      +  V  + +  +G   +S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 162 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP 221
                + +W      N               S          +     + + + +++   
Sbjct: 273 SLDRSVKLWNLQNANN--------------KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

Query: 222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG-------LSILKWSPTGDYFFAAKFD 274
           +  Y+ S S +      WD   G    + +G           +     P  + F     D
Sbjct: 319 NDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 275 GTFYLWE 281
               +W+
Sbjct: 378 CKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 19/116 (16%)

Query: 214 ITALSWGPDGRYLASASYESS------------SFTIWDVAQGLGTPIRRGFGGLSILKW 261
           + ++ +  DG+ + S S + S            S +    +             +  +  
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 262 SPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMIL 310
           +   +Y  +   D     W+  +               +     G++  PE  +  
Sbjct: 317 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 206 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPT 264
           L          L   P G  +   +   +S     V     T I        ++ K SP+
Sbjct: 12  LPRTARGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS 69

Query: 265 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 296
           G Y  +    G   +W+T   T    ++   F
Sbjct: 70  GYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 101

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 24/237 (10%), Positives = 54/237 (22%), Gaps = 15/237 (6%)

Query: 182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV 241
           R+        ++  P     L D  R   G ++  +        L    + SS+     V
Sbjct: 94  RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV 153

Query: 242 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS------- 294
                +  +                  +      +    +     +      +       
Sbjct: 154 PG--ASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211

Query: 295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 354
                A  +  G  ++ A A S+  G I  A                     +   G + 
Sbjct: 212 CSSQAAQANYPGM-LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA--GFQM 268

Query: 355 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS 411
           +A   + + + +             A  +            G I   G +   +  +
Sbjct: 269 VAKLKNTDGIMILTVEHSRSCLA--AAENTSSVTASVGQTSGPI-SNGHDSDAIIAA 322

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 9/172 (5%)

Query: 211 GEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR------GFGGLSILKWSPT 264
           G  +        GRYL           + D+     T +             +       
Sbjct: 61  GYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 265 GDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSI 322
             Y  A   +   + + +  T   +   ST G       + PE R+  +  +       +
Sbjct: 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 323 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI 374
           +       L      ++      ++  + +     D S      +    + +
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL 231

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 1/126 (0%)

Query: 163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD 222
            K        S  G  A             S+    R   ++   +     + ++ + P 
Sbjct: 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262

Query: 223 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWET 282
            ++L +A       + W++           F   S++K + + +    A  D TF     
Sbjct: 263 HKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321

Query: 283 NTWTSE 288
              T E
Sbjct: 322 IDQTIE 327

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 5/61 (8%)

Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF----GGLSILKWSPTGDYFF 269
           I+ +   P    L   S++  S T++                    L    +    D   
Sbjct: 14  ISDIKIIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 270 A 270
            
Sbjct: 73  Y 73

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 11/92 (11%), Positives = 26/92 (28%), Gaps = 4/92 (4%)

Query: 217 LSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA-KF 273
            +      Y+   +Y  ++  + DVA      + +     G      +P     +     
Sbjct: 2   PALKAGHEYMIVTNY-PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 274 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE 305
            G  Y  + +T  +   ++ S           
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 16/182 (8%), Positives = 28/182 (15%), Gaps = 9/182 (4%)

Query: 201 TLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG-------LGTPIRRGF 253
           T+       +          PD R     +         D+          L +      
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 88

Query: 254 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF 313
             +     SP G   +A                  P         G    P     +   
Sbjct: 89  RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP--PRLEVFSTADGLEAKPVRTFPMPRQ 146

Query: 314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD 373
              +                 +        V+L       K                  +
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 206

Query: 374 IY 375
             
Sbjct: 207 FS 208

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 4/75 (5%)

Query: 214 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 273
            +    G    Y   A  E      +DV     T ++     L+ L+ S         K 
Sbjct: 279 YSVPVHGEFAAYYQGAP-EKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVRKD 334

Query: 274 DGTFYLWETNTWTSE 288
           DG  Y +       E
Sbjct: 335 DGKIYTFPLEKPEDE 349

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 10/178 (5%)

Query: 206 LRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTG 265
           L +  G      S   DG ++ S S ++S   +WDV  G       G   L         
Sbjct: 170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTS-IRVWDVETGNCIHTLTGHQSL-TSGMELKD 227

Query: 266 DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA 325
           +   +   D T  +W+  T               A    +     +  +     G++   
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD--DGTVKLW 285

Query: 326 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD 383
                L       +L  + S      + +I    +    AV     +   +  + + D
Sbjct: 286 ----DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG--SRNGTEETKLLVLD 337

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 27/204 (13%), Positives = 55/204 (26%), Gaps = 18/204 (8%)

Query: 213 QITALSWGPDGRYLASASYESSSFTIWD----VAQGLGTPIRRGFGGLSILKWSPTGDYF 268
           QIT L+W  DG  L     +              + + +     +    +L      +  
Sbjct: 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195

Query: 269 FAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP 328
                       + +      + +    +   T +   R + +      +       ++ 
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 329 PSLDAHLLPVDLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR 385
                 L   DL     I  +        +     G  + +    GD      +A YDA 
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD------LAAYDAE 309

Query: 386 RTPLISLSLIGFIRGPGDNPKPVA 409
                +L   G +  PG+    +A
Sbjct: 310 -----TLEKKGQVDLPGNASMSLA 328

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.55
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.53
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.4
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.26
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.21
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.05
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.79
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.76
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.66
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.64
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.44
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.35
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.01
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.69
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.56
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.07
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.87
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.64
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.57
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.33
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.15
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.37
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.32
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.8
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.69
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.99
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	92.93
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.53
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.08
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.3
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.48
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.93
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	83.42

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-40  Score=298.98  Aligned_cols=280  Identities=16%  Similarity=0.210  Sum_probs=232.6

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~  177 (444)
                      .|++++|+|+|++||+|+ ||.|+|||+......   ......+|.+.|.+++|+|+++.|++++.|+.|++||+.... 
T Consensus        53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~-  130 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-  130 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred             cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc-
Confidence            499999999999999986 899999999864222   222335789999999999999999999999999999987322 


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCe
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGL  256 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v  256 (444)
                                            ......+..|. ..+.+++|+|++.++++++.++ .|++|++.+++... ...|...+
T Consensus       131 ----------------------~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~-~i~~~~~~~~~~~~~~~~~~~~v  186 (337)
T d1gxra_         131 ----------------------PRIKAELTSSA-PACYALAISPDSKVCFSCCSDG-NIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             -----------------------EEEEEEECSS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTTEEEEEECCCSSCE
T ss_pred             ----------------------ccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence                                  12344566675 7899999999999999999998 99999999887665 44578899


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .+++|+++++.+++++.|+.+++||+++++......+...|.+++|+|+++++++++. ++.+..|++..          
T Consensus       187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~-d~~i~i~d~~~----------  255 (337)
T d1gxra_         187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNK----------  255 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEETTS----------
T ss_pred             ccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecc-ccccccccccc----------
Confidence            9999999999999999999999999999988766778899999999999999987654 46667666522          


Q ss_pred             CCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCC
Q 013347          337 PVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       337 ~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~  415 (444)
                          ........|. .|.+++|+|+|++|++++.|      +.|++||+.+++.+.     . .+|...|.+++|+|||+
T Consensus       256 ----~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D------g~i~iwd~~~~~~~~-----~-~~~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         256 ----PDKYQLHLHESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTPYGASIF-----Q-SKESSSVLSCDISVDDK  319 (337)
T ss_dssp             ----SCEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEE-----E-EECSSCEEEEEECTTSC
T ss_pred             ----cccccccccccccceEEECCCCCEEEEEeCC------CeEEEEECCCCCEEE-----E-ccCCCCEEEEEEeCCCC
Confidence                2223445566 89999999999999999998      999999999987652     2 34778899999999988


Q ss_pred             CCCCceEEEEeccceeeeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      +     |+.|..||.|++|++.|
T Consensus       320 ~-----l~t~s~D~~I~vWdl~~  337 (337)
T d1gxra_         320 Y-----IVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             E-----EEEEETTSCEEEEEEEC
T ss_pred             E-----EEEEeCCCeEEEEEEEC
Confidence            6     77788999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-37  Score=278.31  Aligned_cols=284  Identities=15%  Similarity=0.225  Sum_probs=239.0

Q ss_pred             cccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeC
Q 013347           75 STLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN  154 (444)
Q Consensus        75 ~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~  154 (444)
                      ..|+||.+.                  |++++|+|++++||+|+.||+|+|||+.+ ++....+ .+|...|.+++|+|+
T Consensus        11 ~~L~GH~~~------------------I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~-~~h~~~V~~~~~~~~   70 (317)
T d1vyhc1          11 YALSGHRSP------------------VTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTL-KGHTDSVQDISFDHS   70 (317)
T ss_dssp             CEEECCSSC------------------EEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEE-CCCSSCEEEEEECTT
T ss_pred             EEEcCCCCC------------------eEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCEEEEE-eCCCCcEEEEeeecc
Confidence            468888766                  99999999999999999999999999997 5555555 589999999999999


Q ss_pred             CCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC
Q 013347          155 GGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS  234 (444)
Q Consensus       155 ~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  234 (444)
                      +..++++..++.+.+|+.....                         ....+.+|. ..+.++.|+|+++.+++++.|+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~-  123 (317)
T d1vyhc1          71 GKLLASCSADMTIKLWDFQGFE-------------------------CIRTMHGHD-HNVSSVSIMPNGDHIVSASRDK-  123 (317)
T ss_dssp             SSEEEEEETTSCCCEEETTSSC-------------------------EEECCCCCS-SCEEEEEECSSSSEEEEEETTS-
T ss_pred             cccccccccccccccccccccc-------------------------ccccccccc-ccceeeeccCCCceEEeeccCc-
Confidence            8888888888999999987322                         223344554 7899999999999999999998 


Q ss_pred             eEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCC-----
Q 013347          235 SFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGR-----  307 (444)
Q Consensus       235 ~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~-----  307 (444)
                      .+++||+++++... +..|...+.+++|+|++++|++++.|+.|++|+..+++. ..+..|...+.+++|+|++.     
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  203 (317)
T d1vyhc1         124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS  203 (317)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGG
T ss_pred             ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceee
Confidence            99999999887665 556788999999999999999999999999999998887 45678888999999988653     


Q ss_pred             ---------------EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCC
Q 013347          308 ---------------MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       308 ---------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~  371 (444)
                                     .++++ +.++.+..|++.             +...+.++.+|. .|.+++|+|++++|++++.| 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-  268 (317)
T d1vyhc1         204 EATGSETKKSGKPGPFLLSG-SRDKTIKMWDVS-------------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-  268 (317)
T ss_dssp             GCCSCC-------CCEEEEE-ETTSEEEEEETT-------------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-
T ss_pred             ccccceeeeeccCCceeEec-cCCCEEEEEECC-------------CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC-
Confidence                           34443 445666666542             345667788888 99999999999999999998 


Q ss_pred             CccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          372 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       372 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                           |.|++||+++++.+     ..+.+|...|++++|+|++++     |+.|..||.|++|+
T Consensus       269 -----g~i~iwd~~~~~~~-----~~~~~h~~~V~~~~~s~~~~~-----l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         269 -----KTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFHKTAPY-----VVTGSVDQTVKVWE  317 (317)
T ss_dssp             -----TEEEEECCTTSCCC-----EEEECCSSCEEEEEECSSSSC-----EEEEETTSEEEEEC
T ss_pred             -----CeEEEEECCCCcEE-----EEEcCCCCCEEEEEEcCCCCE-----EEEEeCCCeEEEeC
Confidence                 99999999987765     578899999999999999986     77788999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-36  Score=270.30  Aligned_cols=292  Identities=10%  Similarity=0.071  Sum_probs=221.6

Q ss_pred             cccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEe
Q 013347           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR  152 (444)
Q Consensus        73 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s  152 (444)
                      +..+++||.+.                  |++++|+|+|++||+|+.||+|++||+.+ ++....+...|...|++++|+
T Consensus         4 ~~~~~~GH~~~------------------V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~~h~~~v~~v~~~   64 (299)
T d1nr0a2           4 IDQVRYGHNKA------------------ITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTT   64 (299)
T ss_dssp             EEEEECCCSSC------------------EEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEEC
T ss_pred             cceEcCCCCCC------------------cEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcCCCCCcEEEEEee
Confidence            45678899766                  99999999999999999999999999987 555555556899999999999


Q ss_pred             eCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC
Q 013347          153 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE  232 (444)
Q Consensus       153 ~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  232 (444)
                      |+ +.+++++.|+.+++|+...........                      ....+ ...+.+++|+|+++.+++++ +
T Consensus        65 ~~-g~~~~~~~d~~v~~~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~s~~g~~~~~~~-~  119 (299)
T d1nr0a2          65 SK-GDLFTVSWDDHLKVVPAGGSGVDSSKA----------------------VANKL-SSQPLGLAVSADGDIAVAAC-Y  119 (299)
T ss_dssp             TT-SCEEEEETTTEEEEECSSSSSSCTTSC----------------------CEEEC-SSCEEEEEECTTSSCEEEEE-S
T ss_pred             cc-ceeecccceeeEEEeccCCcccccccc----------------------ccccc-cccccccccccccccccccc-c
Confidence            99 468889999999999987332111100                      01223 36789999999999877665 4


Q ss_pred             CCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCCCEEE
Q 013347          233 SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       233 ~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~  310 (444)
                      + .+.+|+...   .........+.+++|+|++++|++++.|+.|++||+++++..  ....|...|++++|+|++++++
T Consensus       120 ~-~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  195 (299)
T d1nr0a2         120 K-HIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV  195 (299)
T ss_dssp             S-EEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             c-ccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4 899998542   222334567889999999999999999999999999987763  3457889999999999999988


Q ss_pred             EEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          311 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      +++ .++.+..|++....          .......+.+|. .|++++|+|++++|++++.|      +.|++||++++..
T Consensus       196 ~~~-~d~~i~~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~  258 (299)
T d1nr0a2         196 ATD-QSRKVIPYSVANNF----------ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSD  258 (299)
T ss_dssp             EEE-TTSCEEEEEGGGTT----------EESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTS
T ss_pred             ccc-cccccccccccccc----------cccccccccccccccccccccccccceEEEcCC------CEEEEEECCCCCc
Confidence            764 45677777764321          122344566777 89999999999999999998      9999999987654


Q ss_pred             EEEEEeeeeeCCC-CCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          390 ISLSLIGFIRGPG-DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       390 ~~~~~~~~~~~~~-~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      ...   .....|. ..+.++. ++++++     |+.+..||.|++|++.|
T Consensus       259 ~~~---~~~~~~~~~~v~~~~-~~~~~~-----l~s~s~D~~i~iWdl~~  299 (299)
T d1nr0a2         259 HPI---IIKGAHAMSSVNSVI-WLNETT-----IVSAGQDSNIKFWNVPF  299 (299)
T ss_dssp             CCE---EETTSSTTSCEEEEE-EEETTE-----EEEEETTSCEEEEECCC
T ss_pred             ceE---EEecCCCCCcEEEEE-ECCCCE-----EEEEeCCCEEEEEeccC
Confidence            311   1122333 4455554 455554     56677899999999865

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-36  Score=269.56  Aligned_cols=285  Identities=12%  Similarity=0.182  Sum_probs=219.5

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      +..++++|+|+.||+++ ++.+.+|++.+ ......+ .+|...|++++|+|+|+++++++.||+|+|||+......   
T Consensus        20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~-~~~~~~~-~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---   93 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGS-LTDTEIY-TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---   93 (311)
T ss_dssp             CCCCEECTTSSEEEEEE-TTEEEEEETTC-SSCCEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCC-CceeEEE-cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---
Confidence            45789999999999975 66799999987 4444555 589999999999999989999999999999999844322   


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC-CeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-SSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                          ....+..|. ..|.+++|+|++++|++++.+. ..+++|++++++... +..|...|.++
T Consensus        94 --------------------~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          94 --------------------LKTTIPVFS-GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             --------------------EEEEEECSS-SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred             --------------------ccccccccc-Cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                233466675 7999999999999999988642 269999999887654 56678899999


Q ss_pred             EEecCCCe-EEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCC
Q 013347          260 KWSPTGDY-FFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  337 (444)
Q Consensus       260 ~~sp~~~~-l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      +|+|++++ |++|+.|+.|++||+++++. .....|...|+++.|+|+++++++++. ++.+..|++.....     ...
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~-d~~v~~~d~~~~~~-----~~~  226 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTK-----TGV  226 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCE-----EEE
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc-cccccccccccccc-----ccc
Confidence            99999886 68899999999999999887 456688999999999999999987654 46667666533210     000


Q ss_pred             CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC-CCcceeeeeCCC
Q 013347          338 VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD-NPKPVAFSFHDK  415 (444)
Q Consensus       338 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~i~~v~~spdg~  415 (444)
                      . ........+|. .|.+++|+|++++|++++.|      |+|+|||+++++++     ..+..|.. ....+.+.++++
T Consensus       227 ~-~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D------g~v~iwd~~t~~~~-----~~l~~~~~~~~~~~~~~~~~~  294 (311)
T d1nr0a1         227 F-EDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLKVE-----KTIPVGTRIEDQQLGIIWTKQ  294 (311)
T ss_dssp             C-BCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCSSGGGCEEEEEECSS
T ss_pred             c-cccccccccccccccccccCCCCCEEEEEeCC------CeEEEEECCCCcEE-----EEEECCCCccceEEEEEecCC
Confidence            0 01112334566 89999999999999999988      99999999988765     45555543 223445555555


Q ss_pred             CCCCceEEEEeccceeeeeee
Q 013347          416 FKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       416 ~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      +     +.++..+|.|.+|+.
T Consensus       295 ~-----l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         295 A-----LVSISANGFINFVNP  310 (311)
T ss_dssp             C-----EEEEETTCCEEEEET
T ss_pred             E-----EEEEECCCEEEEEeC
Confidence            4     566678999999975

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-35  Score=276.30  Aligned_cols=295  Identities=16%  Similarity=0.189  Sum_probs=228.4

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE-----------------ecCCCCCeEEEEEeeCCCeEEEEe
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-----------------TSDSQRDVKVLEWRPNGGRSLSVG  162 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~-----------------~~~~~~~v~~l~~s~~~~~ll~~~  162 (444)
                      ..|+|++|+|||++||+|+ |+.|+||++.+ ++....+                 ...|...|++++|+|+++.|++++
T Consensus        63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~  140 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  140 (388)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEe-CCeEEEEEecc-cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence            4699999999999999986 89999999987 3332221                 125778899999999999999999


Q ss_pred             cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347          163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       163 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~  242 (444)
                      .||.|++|+....                         .....+.+|. ..|.++.+++++..+++++.++ .+++||.+
T Consensus       141 ~dg~v~i~~~~~~-------------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~-~i~~~d~~  193 (388)
T d1erja_         141 EDRLIRIWDIENR-------------------------KIVMILQGHE-QDIYSLDYFPSGDKLVSGSGDR-TVRIWDLR  193 (388)
T ss_dssp             TTSCEEEEETTTT-------------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-EEEEEETT
T ss_pred             ccccccccccccc-------------------------cccccccccc-ccccccccccccccccccccce-eeeeeecc
Confidence            9999999998732                         3445566775 8999999999999999999998 99999999


Q ss_pred             CCCceeeecCCCCeEEEEEec-CCCeEEEEecCCcEEEEECCCCceec--------cccCCCceeEEEECCCCCEEEEEE
Q 013347          243 QGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       243 ~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~v~iwd~~~~~~~~--------~~~~~~~v~~~~~sp~g~~l~~~~  313 (444)
                      +........+.....++.+++ ++++|++++.|+.|++||.++++...        ..+|...|++++|+|++++|++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence            887777666666677777766 78899999999999999999877521        236788999999999999998765


Q ss_pred             cCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEE
Q 013347          314 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  392 (444)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~  392 (444)
                       .++.+..|++.......... .............|. .|.+++|+|+|++|++++.|      |.|++||+++++.+  
T Consensus       274 -~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d------g~i~vwd~~~~~~~--  343 (388)
T d1erja_         274 -LDRSVKLWNLQNANNKSDSK-TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------RGVLFWDKKSGNPL--  343 (388)
T ss_dssp             -TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------SEEEEEETTTCCEE--
T ss_pred             -CCCcEEEEeccCCccccccc-cccccceeeecccccceEEEEEECCCCCEEEEEeCC------CEEEEEECCCCcEE--
Confidence             44677777765432111110 001222334455666 89999999999999999998      99999999988765  


Q ss_pred             EEeeeeeCCCCCCcceeeeeCCCC-CCCceEEEEeccceeeeeee
Q 013347          393 SLIGFIRGPGDNPKPVAFSFHDKF-KQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       393 ~~~~~~~~~~~~i~~v~~spdg~~-~~~~~l~~~~~~g~i~~~~~  436 (444)
                         ..+++|.+.|.++++++...+ ..+.+|+.|..||+|++|++
T Consensus       344 ---~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         344 ---LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             ---EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             ---EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence               578899999999887665544 23456888899999999987

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-35  Score=273.31  Aligned_cols=291  Identities=12%  Similarity=0.153  Sum_probs=218.9

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      .+|+|++|+|||++||+++.||.|+||++............+|.++|.+++|+|++++|++++.|++|+|||+...    
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~----   83 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR----   83 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT----
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc----
Confidence            3599999999999999999999999999986321222333689999999999999999999999999999999722    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-----eecCCC
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-----IRRGFG  254 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-----~~~~~~  254 (444)
                                         .+.....+.+|. ..|.+++|+|+++.|++++.|+ ++++|++.......     ...|..
T Consensus        84 -------------------~~~~~~~~~~~~-~~v~~i~~~p~~~~l~~~s~d~-~i~i~~~~~~~~~~~~~~~~~~~~~  142 (371)
T d1k8kc_          84 -------------------TWKPTLVILRIN-RAARCVRWAPNEKKFAVGSGSR-VISICYFEQENDWWVCKHIKKPIRS  142 (371)
T ss_dssp             -------------------EEEEEEECCCCS-SCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             -------------------cccccccccccc-ccccccccccccccceeecccC-cceeeeeeccccccccccccccccc
Confidence                               223344455664 7899999999999999999998 99999998765432     224678


Q ss_pred             CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-------------------eccccCCCceeEEEECCCCCEEEEEEcC
Q 013347          255 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------------EPWSSTSGFVTGATWDPEGRMILLAFAG  315 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~  315 (444)
                      .|.+++|+|++++|++|+.|+.|++||......                   .....|...+.+++|+|++++|++++. 
T Consensus       143 ~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-  221 (371)
T d1k8kc_         143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-  221 (371)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-
T ss_pred             ccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-
Confidence            899999999999999999999999999865431                   123467888999999999999987754 


Q ss_pred             CceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE--cCCCCeEEE
Q 013347          316 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD--ARRTPLISL  392 (444)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd--~~~~~~~~~  392 (444)
                      ++.+..|++.             ....+..+..|. +|.+++|+||+++|++|+ |      +.+++|.  ...+.....
T Consensus       222 d~~i~iwd~~-------------~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d------~~~~~~~~~~~~~~~~~~  281 (371)
T d1k8kc_         222 DSTVCLADAD-------------KKMAVATLASETLPLLAVTFITESSLVAAGH-D------CFPVLFTYDSAAGKLSFG  281 (371)
T ss_dssp             TTEEEEEEGG-------------GTTEEEEEECSSCCEEEEEEEETTEEEEEET-T------SSCEEEEEETTTTEEEEC
T ss_pred             CCcceEEeee-------------cccceeeeecccccceeeeecCCCCEEEEEc-C------CceEEEEeeCCCceEEEe
Confidence            5677777753             234566777787 899999999999888765 4      4455544  332221100


Q ss_pred             E---------------------------------Ee-eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          393 S---------------------------------LI-GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       393 ~---------------------------------~~-~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .                                 .. .....|.+.|+++++.+.+..... .++-+-.||.|++|++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~-~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS-QFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS-EEEEEETTSEEEEEEHH
T ss_pred             eeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceE-EEEEEcCCCeEEEEeCC
Confidence            0                                 00 000137778899999987654322 34455578999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-35  Score=264.08  Aligned_cols=290  Identities=14%  Similarity=0.218  Sum_probs=231.0

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW  151 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~  151 (444)
                      ....+|+||.+.                  |++++|+|++++||+|+.||+|+|||+.+ ++....+ ..|...|.+++|
T Consensus        46 ~~~~tL~GH~~~------------------I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~-~~~~~~v~~v~~  105 (340)
T d1tbga_          46 RTRRTLRGHLAK------------------IYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAI-PLRSSWVMTCAY  105 (340)
T ss_dssp             CEEEEECCCSSC------------------EEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEE-ECSCSCEEEEEE
T ss_pred             eeeEEECCCCCC------------------EEEEEECCCCCEEEEEECCCceeeeeccc-ceeEEEE-ecccccEEeeEe
Confidence            345678899776                  99999999999999999999999999987 4544444 589999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347          152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  231 (444)
Q Consensus       152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  231 (444)
                      +|++..+++++.|+.+++|+........                     .....+.+|. ....... ...+..+.....
T Consensus       106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~---------------------~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~  162 (340)
T d1tbga_         106 APSGNYVACGGLDNICSIYNLKTREGNV---------------------RVSRELAGHT-GYLSCCR-FLDDNQIVTSSG  162 (340)
T ss_dssp             CTTSSEEEEEETTCCEEEEESSSSCSCC---------------------CEEEEECCCS-SCEEEEE-EEETTEEEEEET
T ss_pred             eccceeeeeecccceeeccccccccccc---------------------ccceeccccc-ccccccc-cccccccccccc
Confidence            9999999999999999999987433221                     2334456664 3444444 444566777777


Q ss_pred             CCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEE
Q 013347          232 ESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMI  309 (444)
Q Consensus       232 d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l  309 (444)
                      +. ....+......... ...+...+....+.+.+.++++++.|+.|++||+++++. ..+.+|...|++++|+|+++++
T Consensus       163 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l  241 (340)
T d1tbga_         163 DT-TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF  241 (340)
T ss_dssp             TT-EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cc-cccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEE
Confidence            87 88888877665444 445678899999999999999999999999999999887 5577899999999999999999


Q ss_pred             EEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccc--ccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          310 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL--TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                      ++++. ++.+..|++..             ...+..+  ..+. .|.+++|+|++++|++++.|      |.|++||+.+
T Consensus       242 ~s~s~-d~~i~~~~~~~-------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d------g~i~iwd~~~  301 (340)
T d1tbga_         242 ATGSD-DATCRLFDLRA-------------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALK  301 (340)
T ss_dssp             EEEET-TSCEEEEETTT-------------TEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT------SCEEEEETTT
T ss_pred             EEEeC-CCeEEEEeecc-------------cccccccccccccCceEEEEECCCCCEEEEEECC------CEEEEEECCC
Confidence            87654 46677766532             1222222  2333 79999999999999999998      9999999998


Q ss_pred             CCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          387 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ++.+     ..+.+|...|++++|+|||++     |+.|..||.|++|+
T Consensus       302 ~~~~-----~~~~~H~~~V~~l~~s~d~~~-----l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         302 ADRA-----GVLAGHDNRVSCLGVTDDGMA-----VATGSWDSFLKIWN  340 (340)
T ss_dssp             CCEE-----EEECCCSSCEEEEEECTTSSC-----EEEEETTSCEEEEC
T ss_pred             CcEE-----EEEcCCCCCEEEEEEeCCCCE-----EEEEccCCEEEEeC
Confidence            7765     678899999999999999887     77788999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-33  Score=254.51  Aligned_cols=238  Identities=12%  Similarity=0.137  Sum_probs=201.6

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|+|++|++++.||.|++||+.............|...+..++|+|++..+++++.++.|++|++...    
T Consensus        98 ~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~----  173 (337)
T d1gxra_          98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ----  173 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----
T ss_pred             CcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            3699999999999999999999999999986433333333588999999999999888888899999999999832    


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL  259 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~  259 (444)
                                           .+.....+|. ..|.+++|+++++.+++++.|+ .+++||+++++......+...|.++
T Consensus       174 ---------------------~~~~~~~~~~-~~v~~l~~s~~~~~~~~~~~d~-~v~i~d~~~~~~~~~~~~~~~i~~l  230 (337)
T d1gxra_         174 ---------------------TLVRQFQGHT-DGASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQHDFTSQIFSL  230 (337)
T ss_dssp             ---------------------EEEEEECCCS-SCEEEEEECTTSSEEEEEETTS-EEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             ---------------------cccccccccc-cccccccccccccccccccccc-cccccccccceeecccccccceEEE
Confidence                                 2344455664 7899999999999999999998 9999999999888888889999999


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  339 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      +|+|++++|++++.|+.+++||+++++......|...|++++|+|++++|++++. ++.++.|++.             .
T Consensus       231 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~~-------------~  296 (337)
T d1gxra_         231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTP-------------Y  296 (337)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETT-------------T
T ss_pred             EEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeC-CCeEEEEECC-------------C
Confidence            9999999999999999999999999988778889999999999999999987654 4666666542             2


Q ss_pred             cccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          340 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       340 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      ...+..+.++..|.+++|+|++++|++++.|      ++|+|||+
T Consensus       297 ~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D------~~I~vWdl  335 (337)
T d1gxra_         297 GASIFQSKESSSVLSCDISVDDKYIVTGSGD------KKATVYEV  335 (337)
T ss_dssp             CCEEEEEECSSCEEEEEECTTSCEEEEEETT------SCEEEEEE
T ss_pred             CCEEEEccCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEEE
Confidence            3344455444499999999999999999998      99999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-33  Score=253.82  Aligned_cols=239  Identities=16%  Similarity=0.136  Sum_probs=189.6

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN  177 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~  177 (444)
                      ..|++++|+|+|++||+|+.||+|+||++.............|...|.+++|+|+++.+++++.+  ..+++|+++....
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~  138 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  138 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccc
Confidence            36999999999999999999999999999985444444446899999999999998888888764  6799999984433


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEEeeCCCeEEEEEcCCCCcee-eecCCCC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTP-IRRGFGG  255 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~  255 (444)
                      .                         ..+.+|. ..|.+++|+|++++ |++++.|+ .|++||+++++... ...|...
T Consensus       139 ~-------------------------~~l~~h~-~~v~~v~~~~~~~~~l~sgs~d~-~i~i~d~~~~~~~~~~~~~~~~  191 (311)
T d1nr0a1         139 N-------------------------GNLTGQA-RAMNSVDFKPSRPFRIISGSDDN-TVAIFEGPPFKFKSTFGEHTKF  191 (311)
T ss_dssp             C-------------------------BCCCCCS-SCEEEEEECSSSSCEEEEEETTS-CEEEEETTTBEEEEEECCCSSC
T ss_pred             c-------------------------ccccccc-cccccccccccceeeeccccccc-cccccccccccccccccccccc
Confidence            2                         2355664 78999999999986 77788888 99999999887665 4467889


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCcee--------ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--------~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      |.+++|+|++++|++++.|+.|++||..+++..        ...+|...|++++|+|++++|++++ .++.++.|++.  
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd~~--  268 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVA--  268 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT--
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEEECC--
Confidence            999999999999999999999999999887652        1236888999999999999999765 45666666642  


Q ss_pred             CCCcCCCcCCCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                                 +...++++..+.  ....+.+.+++++|++++.|      |.|++||++
T Consensus       269 -----------t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~d------G~i~~wd~d  311 (311)
T d1nr0a1         269 -----------TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN------GFINFVNPE  311 (311)
T ss_dssp             -----------TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT------CCEEEEETT
T ss_pred             -----------CCcEEEEEECCCCccceEEEEEecCCEEEEEECC------CEEEEEeCC
Confidence                       345556666554  23333444456679999988      999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-32  Score=248.27  Aligned_cols=252  Identities=13%  Similarity=0.179  Sum_probs=196.3

Q ss_pred             CCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc
Q 013347          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (444)
Q Consensus       141 ~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (444)
                      ...++|++++|+|+++.+++++.|+.|+||+++.                       +++.....+++|. ..|.+++|+
T Consensus         5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~-----------------------~~~~~~~~l~gH~-~~V~~l~fs   60 (371)
T d1k8kc_           5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-----------------------NKWVQVHELKEHN-GQVTGVDWA   60 (371)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEET-----------------------TEEEEEEEEECCS-SCEEEEEEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCC-----------------------CCEEEEEEecCCC-CCEEEEEEC
Confidence            3457899999999988888888899999999872                       2445667788996 899999999


Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-----ecccc
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSS  292 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-----~~~~~  292 (444)
                      |++++|++++.|+ +|++||+.++....   +..+...|.+++|+|++++|++++.|+.+++|++.....     .....
T Consensus        61 p~~~~l~s~s~D~-~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~  139 (371)
T d1k8kc_          61 PDSNRIVTCGTDR-NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP  139 (371)
T ss_dssp             TTTTEEEEEETTS-CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCEEEEEECCC-eEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccc
Confidence            9999999999998 99999998775443   345678899999999999999999999999999876543     22447


Q ss_pred             CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC--CcCCC---CcccccccccCC-ceeEEEECCCCCEEEE
Q 013347          293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA--HLLPV---DLPDIVSLTGSQ-GIEKIAWDASGERLAV  366 (444)
Q Consensus       293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~-~v~~~~~spdg~~l~~  366 (444)
                      |...|.+++|+|++++|++++ .++.+..|+..........  ..+..   ....+....+|. .|.+++|+|+|++|++
T Consensus       140 ~~~~v~~v~~~p~~~~l~s~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s  218 (371)
T d1k8kc_         140 IRSTVLSLDWHPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  218 (371)
T ss_dssp             CCSCEEEEEECTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             cccccccccccccccceeccc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc
Confidence            888999999999999998664 4567777766433211110  00000   122334455666 8999999999999999


Q ss_pred             EecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          367 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       367 ~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      ++.|      +.|++||+.+++.+     ..+.+|..+|.+++|+|||++     ++.|. ++.+.+|.
T Consensus       219 ~~~d------~~i~iwd~~~~~~~-----~~~~~~~~~v~s~~fs~d~~~-----la~g~-d~~~~~~~  270 (371)
T d1k8kc_         219 VSHD------STVCLADADKKMAV-----ATLASETLPLLAVTFITESSL-----VAAGH-DCFPVLFT  270 (371)
T ss_dssp             EETT------TEEEEEEGGGTTEE-----EEEECSSCCEEEEEEEETTEE-----EEEET-TSSCEEEE
T ss_pred             cccC------CcceEEeeecccce-----eeeecccccceeeeecCCCCE-----EEEEc-CCceEEEE
Confidence            9988      99999999987765     567789999999999999875     66665 45555443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-31  Score=239.35  Aligned_cols=286  Identities=12%  Similarity=0.153  Sum_probs=205.7

Q ss_pred             eEEEEEecCCCeEEEEECCCe-EEEEEccCCC-CceeEEecCC-CCCeEEEEEeeC--CCeEEEEecCCcEEEEecCCCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQ-VIVRDYEDSG-KDACILTSDS-QRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~-v~iw~~~~~~-~~~~~~~~~~-~~~v~~l~~s~~--~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      +++++|+|+|+.||+++.+.. ++.|+..... .....+ .+| ...|++++|+|+  +..+++++.||+|+|||+....
T Consensus        20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            678999999999999875543 4556554422 222333 466 568999999984  4466677789999999997443


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee--CCCeEEEEEcCCCCcee-eecCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY--ESSSFTIWDVAQGLGTP-IRRGF  253 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d~~~i~iwd~~~~~~~~-~~~~~  253 (444)
                      ....+..                 .....+..|. ..|.+++|+++++++++++.  ++ .+.+|+.++++... +..|.
T Consensus        99 ~~~~~~~-----------------~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          99 ESNSVEV-----------------NVKSEFQVLA-GPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             GGTEEEE-----------------EEEEEEECCS-SCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSCS
T ss_pred             ceeeeec-----------------cccccccccc-CcEEEEEECCCCCccceeeccccc-eEEEEeecccccceeeeecc
Confidence            3332221                 1223455664 78999999999999988764  44 79999999887665 55688


Q ss_pred             CCeEEEEEecCCCe-EEEEecCCcEEEEECCCCcee----ccccCCCceeEEEECCCC-CEEEEEEcCCceEEEEEeecC
Q 013347          254 GGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       254 ~~v~~~~~sp~~~~-l~~~~~d~~v~iwd~~~~~~~----~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~~~~~  327 (444)
                      ..|.+++|+|++.+ +++++.|+.+++||....+..    ....|...|.+++|+|++ .+++++ +.++.+..|++.  
T Consensus       160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~-~~d~~i~iwd~~--  236 (325)
T d1pgua1         160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGK--  236 (325)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETT--
T ss_pred             cccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccc-ccccceeeeeec--
Confidence            99999999999876 578999999999999877652    234678889999999975 566654 455667766642  


Q ss_pred             CCCcCCCcCCCCcccccccccCC-ceeEEEEC---CCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCC
Q 013347          328 PPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD---ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  403 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s---pdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  403 (444)
                                 +...+.++.+|. ++..+.|+   |||++|++++.|      +.|+|||+++++.+     ..+..|..
T Consensus       237 -----------~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D------~~i~iwd~~~~~~~-----~~~~~~~~  294 (325)
T d1pgua1         237 -----------SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD------ATIRVWDVTTSKCV-----QKWTLDKQ  294 (325)
T ss_dssp             -----------TCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT------SEEEEEETTTTEEE-----EEEECCTT
T ss_pred             -----------cccccccccccccccccceeeeeccCCCEEEEEeCC------CeEEEEECCCCCEE-----EEEEecCC
Confidence                       345566777776 66555555   789999999998      99999999988765     44555544


Q ss_pred             C--CcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          404 N--PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       404 ~--i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                      .  +..+++.+.+..    .+..+..||.|++|+|
T Consensus       295 ~~~~~~~~~~~~~~~----~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 QLGNQQVGVVATGNG----RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CGGGCEEEEEEEETT----EEEEEETTSCEEEEET
T ss_pred             cccCeEEEEEECCCC----EEEEEECCCEEEEEEC
Confidence            3  445556554321    3556677899999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-31  Score=240.06  Aligned_cols=307  Identities=15%  Similarity=0.141  Sum_probs=213.8

Q ss_pred             ccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee
Q 013347           74 FSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP  153 (444)
Q Consensus        74 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~  153 (444)
                      +.+|+||...+                 ++|++  +++++||+|+.||+|+|||+.+ ++....+ .+|.+.|++++|+|
T Consensus         5 ~~tL~GH~~~v-----------------itc~~--~~~~~l~tgs~Dg~i~vWd~~~-~~~~~~l-~~H~~~V~~l~~s~   63 (355)
T d1nexb2           5 RTTLRGHMTSV-----------------ITCLQ--FEDNYVITGADDKMIRVYDSIN-KKFLLQL-SGHDGGVWALKYAH   63 (355)
T ss_dssp             EEEEECCSSSC-----------------EEEEE--EETTEEEEEETTTEEEEEETTT-TEEEEEE-ECCSSCEEEEEEET
T ss_pred             cEEECCcCCCc-----------------EEEEE--ECCCEEEEEeCCCeEEEEECCC-CcEEEEE-ECCCCCEEEEEEcC
Confidence            45688996551                 45555  4688999999999999999987 5555555 58999999999998


Q ss_pred             CCCeEEEEecCCcEEEEecCCCCCcceeecccccc---------cc-c-cccCCCCceEEEEEeecc--------C----
Q 013347          154 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF---------LG-A-LSRGPGTRWTLVDFLRSQ--------N----  210 (444)
Q Consensus       154 ~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---------~~-~-~~~~~~~~~~~~~~~~~~--------~----  210 (444)
                      + +.+++++.|+.|++|++................         .. . +..+.++...++..-...        .    
T Consensus        64 ~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  142 (355)
T d1nexb2          64 G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  142 (355)
T ss_dssp             T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred             C-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc
Confidence            7 789999999999999998544332221111000         00 0 111223333332211000        0    


Q ss_pred             -------C---------CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEec
Q 013347          211 -------G---------EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF  273 (444)
Q Consensus       211 -------~---------~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~  273 (444)
                             .         .......+.++++.++++..|+ .|++||+.+++... ...+...+.++.|+|+++++++++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (355)
T d1nexb2         143 VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN-TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM  221 (355)
T ss_dssp             EESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTS-CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             ceeccccccceeeeeeeccccccccccccceeeeecccc-eeeeeecccccceeeeeccccccccccccccceeeecccc
Confidence                   0         0011233456778888888887 99999998876655 3446788899999999999999999


Q ss_pred             CCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-c
Q 013347          274 DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G  351 (444)
Q Consensus       274 d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  351 (444)
                      |+.|++||.+++.. ..+.+|...|.+++|++  ++|+++ +.++.++.|++.+               ..+.+..|. .
T Consensus       222 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~---------------~~~~~~~~~~~  283 (355)
T d1nexb2         222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSA-AADGSIRGWDAND---------------YSRKFSYHHTN  283 (355)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEE-CTTSEEEEEETTT---------------CCEEEEEECTT
T ss_pred             cceEEeeecccccccccccccccccccccccc--ceeeee-ecccccccccccc---------------cceecccccCC
Confidence            99999999999887 55778999999999975  567755 4556676666421               122344444 4


Q ss_pred             eeEE-EECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccce
Q 013347          352 IEKI-AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF  430 (444)
Q Consensus       352 v~~~-~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~  430 (444)
                      +..+ .+++++++|++++ |      +.|+|||+++++.+    ...+.+|.+.|.+++|+|+.      +++.+..||+
T Consensus       284 ~~~~~~~~~~~~~l~~g~-d------~~i~vwd~~tg~~~----~~~~~~~~~~V~~v~~~~~~------~~~~~s~dg~  346 (355)
T d1nexb2         284 LSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLV----HANILKDADQIWSVNFKGKT------LVAAVEKDGQ  346 (355)
T ss_dssp             CCCCCEEEECSSEEEEEE-T------TEEEEEETTTCCBC----CSCTTTTCSEEEEEEEETTE------EEEEEESSSC
T ss_pred             ceEEEEEcCCCCEEEEEe-C------CEEEEEECCCCCEE----EEEecCCCCCEEEEEEcCCe------EEEEEECCCc
Confidence            4444 4677888777765 6      89999999998765    23456899999999998762      4667778999


Q ss_pred             eeeeeeee
Q 013347          431 CCTYPLIF  438 (444)
Q Consensus       431 i~~~~~~~  438 (444)
                      +.+|-+.|
T Consensus       347 ~~l~~~df  354 (355)
T d1nexb2         347 SFLEILDF  354 (355)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            88776654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-29  Score=229.66  Aligned_cols=303  Identities=10%  Similarity=-0.001  Sum_probs=206.9

Q ss_pred             cccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCcee-EEecCCCCCeEEEEE
Q 013347           73 LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEW  151 (444)
Q Consensus        73 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~v~~l~~  151 (444)
                      ++.++++|...                  |++++|+|++++||+|+.||+|+|||+........ ....+|..+|.+++|
T Consensus         3 ~v~~~~~h~d~------------------I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f   64 (342)
T d1yfqa_           3 IVQIEQAPKDY------------------ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF   64 (342)
T ss_dssp             EEECSSCCSSC------------------EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEE
T ss_pred             eEEcCCCCCCC------------------EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEE
Confidence            45567777655                  99999999999999999999999999987433222 222479999999999


Q ss_pred             eeCCCe-EEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe
Q 013347          152 RPNGGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS  230 (444)
Q Consensus       152 s~~~~~-ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~  230 (444)
                      +|+++. +++++.|+.|++|++........                         ...+.........+.++...+++++
T Consensus        65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  119 (342)
T d1yfqa_          65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQA-------------------------LTNNEANLGICRICKYGDDKLIAAS  119 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSSSEEE-------------------------CBSCCCCSCEEEEEEETTTEEEEEE
T ss_pred             eCCCCCEEEEcccccceeeeeccccccccc-------------------------ccccccccccccccccccccccccc
Confidence            998664 56667799999999984433222                         1222224455666777888999999


Q ss_pred             eCCCeEEEEEcCCCCceeee--c-----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec----cccCCCceeE
Q 013347          231 YESSSFTIWDVAQGLGTPIR--R-----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSGFVTG  299 (444)
Q Consensus       231 ~d~~~i~iwd~~~~~~~~~~--~-----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~v~~  299 (444)
                      .++ .+++||++........  .     .......+.+.+++..+++++.|+.|++||++..+...    .......+.+
T Consensus       120 ~~~-~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (342)
T d1yfqa_         120 WDG-LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD  198 (342)
T ss_dssp             TTS-EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE
T ss_pred             ccc-ccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceee
Confidence            998 9999998765433211  1     12344566778889999999999999999998766522    2244455666


Q ss_pred             EEECCC-CCEEEEEEcCCceEEEEEeecCCCCcCCCcCC--CCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccc
Q 013347          300 ATWDPE-GRMILLAFAGSLTLGSIHFASKPPSLDAHLLP--VDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       300 ~~~sp~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      ..+.+. +..++++ +.++.+..+.+.............  ..........+|. .|++++|+|++++||+|+.|     
T Consensus       199 ~~~~~~~~~~~~~~-s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~D-----  272 (342)
T d1yfqa_         199 VALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-----  272 (342)
T ss_dssp             EEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-----
T ss_pred             eEeecCCCCEEEee-cCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCC-----
Confidence            666654 4555544 555677766654332111110000  0011112233444 78999999999999999998     


Q ss_pred             cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          376 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       376 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                       |.|+|||+++++.+     ..+.. ...+..++|+|+|++     |+++.+++.+..+...
T Consensus       273 -g~v~vWD~~~~~~l-----~~~~~-~~~~~~~~~s~~~~~-----l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         273 -GIISCWNLQTRKKI-----KNFAK-FNEDSVVKIACSDNI-----LCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -SCEEEEETTTTEEE-----EECCC-CSSSEEEEEEECSSE-----EEEEEECTHHHHCSSS
T ss_pred             -CEEEEEECCCCcEE-----EEecC-CCCCEEEEEEeCCCE-----EEEEEcCCcEEEeeee
Confidence             99999999987765     23332 234567899999875     7788788776655543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=229.54  Aligned_cols=311  Identities=13%  Similarity=0.112  Sum_probs=210.8

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW  151 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~  151 (444)
                      ....+|+||.+.                  |.+ +++++|++||+|+.||+|+|||+.+ ++....+ .+|...|.+++|
T Consensus         7 ~~~~~l~GH~~~------------------V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~-~~h~~~V~~v~~   65 (342)
T d2ovrb2           7 KSPKVLKGHDDH------------------VIT-CLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTL-VGHTGGVWSSQM   65 (342)
T ss_dssp             CCCEEEECSTTS------------------CEE-EEEEETTEEEEEETTSCEEEEETTT-CCEEEEC-CCCSSCEEEEEE
T ss_pred             CcCEEECCcCCc------------------eEE-EEEECCCEEEEEeCCCeEEEEECCC-CCEEEEE-eCCCCCEEEEEe
Confidence            345678999766                  654 3677899999999999999999987 5555555 589999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc-------ccccccCCCCceE--------EEEEeeccCCCceEE
Q 013347          152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF-------LGALSRGPGTRWT--------LVDFLRSQNGEQITA  216 (444)
Q Consensus       152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~~~~v~~  216 (444)
                      +|+  .+++++.|+.+++|+.................       ........+....        ....+..+   ....
T Consensus        66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~  140 (342)
T d2ovrb2          66 RDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH---VAAV  140 (342)
T ss_dssp             ETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC---SSCE
T ss_pred             CCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecc---cccc
Confidence            875  88888999999999987433222211110000       0000001111111        11112211   1123


Q ss_pred             EEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCC
Q 013347          217 LSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS  294 (444)
Q Consensus       217 ~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~  294 (444)
                      ....+....+++++.++ .|++||........ +..|...+.  .++++++++++++.||.|++||++.++. ..+..|.
T Consensus       141 ~~~~~~~~~~~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~  217 (342)
T d2ovrb2         141 RCVQYDGRRVVSGAYDF-MVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ  217 (342)
T ss_dssp             EEEEECSSCEEEEETTS-CEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred             eeeccccceeeeecCCC-eEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeCCCeEEEeecccceeeeEecccc
Confidence            34455677888999998 99999998876654 344555544  4555789999999999999999999887 4566888


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ..+.++++++  +++++++ .++.+..|++....          ....+.....|. .+.++.++  ++++++++.|   
T Consensus       218 ~~v~~~~~~~--~~l~s~s-~d~~i~iwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~D---  279 (342)
T d2ovrb2         218 SLTSGMELKD--NILVSGN-ADSTVKIWDIKTGQ----------CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD---  279 (342)
T ss_dssp             SCEEEEEEET--TEEEEEE-TTSCEEEEETTTCC----------EEEEECSTTSCSSCEEEEEEC--SSEEEEEETT---
T ss_pred             cceeEEecCC--CEEEEEc-CCCEEEEEeccccc----------ccccccccceeeeceeecccC--CCeeEEEcCC---
Confidence            8898887765  5777654 45677777653211          111122222333 56666664  5699999988   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccce----eeeeeee
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF----CCTYPLI  437 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~----i~~~~~~  437 (444)
                         |+|++||+++++.+.........+|...|++++|+|++++     +++|..+|+    |.+|+|.
T Consensus       280 ---g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~-----la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         280 ---GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV-----CAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ---SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE-----EEEECSSSSSCCEEEEEECC
T ss_pred             ---CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE-----EEEEeCCCCCeeEEEEEeCC
Confidence               9999999999987643332233467888999999999875     889988885    8888775

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-29  Score=234.21  Aligned_cols=236  Identities=16%  Similarity=0.236  Sum_probs=187.1

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|++++|+|+|++|++|+.||.|++|+... ++..... .+|...|.++.|++++..+++++.++.+++||.....   
T Consensus       122 ~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---  196 (388)
T d1erja_         122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---  196 (388)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---
T ss_pred             CCEEEEEECCCCCcceecccccccccccccc-ccccccc-ccccccccccccccccccccccccceeeeeeeccccc---
Confidence            3599999999999999999999999999986 4444443 6899999999999998889999999999999987321   


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEc-cCCCeEEEEeeCCCeEEEEEcCCCCceee--------e
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRYLASASYESSSFTIWDVAQGLGTPI--------R  250 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~~i~iwd~~~~~~~~~--------~  250 (444)
                                            .......+  ....++.++ +++++|++++.|+ .|++||+.++.....        .
T Consensus       197 ----------------------~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~  251 (388)
T d1erja_         197 ----------------------CSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR-AVRVWDSETGFLVERLDSENESGT  251 (388)
T ss_dssp             ----------------------EEEEEECS--SCEEEEEECSTTCCEEEEEETTS-CEEEEETTTCCEEEEEC------C
T ss_pred             ----------------------cccccccc--cccccccccCCCCCeEEEEcCCC-eEEEeecccCccceeecccccccc
Confidence                                  22223333  344555555 4889999999998 999999998765432        2


Q ss_pred             cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-------------eccccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          251 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       251 ~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-------------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      .|...|.+++|+|++++|++++.|+.|++||+++++.             .....|...|.+++|+|++++|++++. ++
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg  330 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DR  330 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TS
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CC
Confidence            4678899999999999999999999999999986543             123367889999999999999987654 46


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEE------ECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIA------WDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~------~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      .++.|++.             +...+.++.+|. .|.+++      |+|++++|++|+.|      |+|+||+++
T Consensus       331 ~i~vwd~~-------------~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D------g~I~iW~~~  386 (388)
T d1erja_         331 GVLFWDKK-------------SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYK  386 (388)
T ss_dssp             EEEEEETT-------------TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEE
T ss_pred             EEEEEECC-------------CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC------CEEEEEeee
Confidence            66666642             456678888888 888886      56799999999998      999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-29  Score=234.60  Aligned_cols=281  Identities=14%  Similarity=0.133  Sum_probs=187.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCC----ceeEEecCCCCCeEEEEEe---e----CCCeEEEEecCCcEEEE
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK----DACILTSDSQRDVKVLEWR---P----NGGRSLSVGCKGGICIW  170 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~----~~~~~~~~~~~~v~~l~~s---~----~~~~ll~~~~dg~v~iw  170 (444)
                      |+++++++  ++|++++.|++|+|||......    ........|...+..+...   +    ++..+++++.||.|++|
T Consensus        17 I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w   94 (393)
T d1sq9a_          17 IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   94 (393)
T ss_dssp             EEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             cEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEE
Confidence            99998864  7999999999999999875321    1111222455554433331   1    11234456679999999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEe--eccCCCceEEEEEccC-----CCeEEEEeeCCCeEEEEEcCC
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFL--RSQNGEQITALSWGPD-----GRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~-----~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      ++............                 ....+  ..+ ...+..++|.++     +.++++++.|+ .+++|++..
T Consensus        95 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~vw~~~~  155 (393)
T d1sq9a_          95 RITREDETKKVIFE-----------------KLDLLDSDMK-KHSFWALKWGASNDRLLSHRLVATDVKG-TTYIWKFHP  155 (393)
T ss_dssp             EEEECTTTCCEEEE-----------------EECCSCTTGG-GSCEEEEEEECCC----CEEEEEEETTS-CEEEEEEES
T ss_pred             EccCCCceeeeecc-----------------ccceeeeccC-CCceEEEEEecCCCcccccEEEEEcCCC-cEEEEEeec
Confidence            98744433222111                 00000  111 245677777764     46788999998 999999854


Q ss_pred             CCc------------ee-------eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-------ccccCCCce
Q 013347          244 GLG------------TP-------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTSGFV  297 (444)
Q Consensus       244 ~~~------------~~-------~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-------~~~~~~~~v  297 (444)
                      ...            ..       ...+...+.+++|+|++ +|++|+.|++|++||+.+++..       .+.+|...|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V  234 (393)
T d1sq9a_         156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI  234 (393)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred             CCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence            311            00       11233568899999998 8899999999999999988752       244789999


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCC---CcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA---HLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ++++|+|+|++|++++.+ .....+++|+.......   ............+.+|. .|++++|+|||++|++++.|   
T Consensus       235 ~~l~~spdg~~l~sgs~D-~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D---  310 (393)
T d1sq9a_         235 RSVKFSPQGSLLAIAHDS-NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD---  310 (393)
T ss_dssp             EEEEECSSTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT---
T ss_pred             EEcccccccceeeeecCC-CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCC---
Confidence            999999999999977543 44566666654211000   00111223344556888 99999999999999999999   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCc----ceeeeeCCCC
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK----PVAFSFHDKF  416 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~----~v~~spdg~~  416 (444)
                         ++|+|||+++++.+     ..+++|.+.|.    .++|+|+|..
T Consensus       311 ---~~v~vWd~~~g~~~-----~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         311 ---GKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ---SEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             ---CEEEEEECCCCCEE-----EEECCcCCcccCCccEEEECCCCCE
Confidence               99999999998765     67889988775    4788888875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-29  Score=222.48  Aligned_cols=270  Identities=12%  Similarity=0.061  Sum_probs=206.4

Q ss_pred             ccccccccccccccccccCCCCccCccccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEE
Q 013347           72 GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW  151 (444)
Q Consensus        72 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~  151 (444)
                      .+..+|+||.+.                  |++++|+|    |++|+.||+|++||+.+.       ..+|...|.+++|
T Consensus         4 ~~i~~l~gH~~~------------------I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~   54 (287)
T d1pgua2           4 EVLKTISGHNKG------------------ITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDN   54 (287)
T ss_dssp             EEEEEECCCSSC------------------EEEEETTT----TEEEETTSCEEETTTTEE-------ECCCCSCEEEEEC
T ss_pred             ceeEEECCCCCc------------------eEEEEECc----EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEe
Confidence            456788999766                  99999987    899999999999998741       2489999999999


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee
Q 013347          152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY  231 (444)
Q Consensus       152 s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  231 (444)
                      +++ ..+++++.|+++++|++...                               . . ...+.++.+++++..+++++ 
T Consensus        55 ~~~-~~~~s~s~D~~v~~w~~~~~-------------------------------~-~-~~~~~~~~~~~~~~~~~~~~-   99 (287)
T d1pgua2          55 SKA-QEYSSISWDDTLKVNGITKH-------------------------------E-F-GSQPKVASANNDGFTAVLTN-   99 (287)
T ss_dssp             CST-TCCEEEETTTEEEETTEEEE-------------------------------E-C-SSCEEEEEECSSSEEEEEET-
T ss_pred             cCC-CeEEEEeecccccccccccc-------------------------------c-c-ccceeeeeeccCCceEEEee-
Confidence            987 77899999999999998611                               1 1 24677889999988777655 


Q ss_pred             CCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC-cEEEEECCCCcee--ccccCCCceeEEEECCCCCE
Q 013347          232 ESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRM  308 (444)
Q Consensus       232 d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g~~  308 (444)
                      ++ .+.+|+..+++..........+  .+++++++.+++++.++ .+++|++...+..  ....+...+++++|+|++.+
T Consensus       100 ~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  176 (287)
T d1pgua2         100 DD-DLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY  176 (287)
T ss_dssp             TS-EEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE
T ss_pred             cc-cceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc
Confidence            44 7999999888777666655554  45677888888777765 7999999766542  23467788999999999999


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCC----------CCEEEEEecCCCccccc
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDAS----------GERLAVSYKGGDDIYKG  377 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd----------g~~l~~~~~d~~~~~d~  377 (444)
                      |+++.. ++.+..|++.+.            ......+.+|. .|.+++|+|+          +.+|++++.|      +
T Consensus       177 l~~g~~-dg~i~i~d~~~~------------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D------~  237 (287)
T d1pgua2         177 IAAGDV-MGKILLYDLQSR------------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD------T  237 (287)
T ss_dssp             EEEEET-TSCEEEEETTTT------------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT------S
T ss_pred             cccccc-cccccceeeccc------------ccccccccccccccceeeecccccccccccCCCCeeEeecCC------C
Confidence            997754 466777665321            11223456677 8999999875          4689999998      9


Q ss_pred             eEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          378 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       378 ~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +|+|||++.....    +..+.+|...|++++|+|++++     ++ +.+||.|++|+++
T Consensus       238 ~i~iw~~~~~~~~----~~~~~~h~~~V~~v~~~~~~~l-----~s-~g~D~~v~iW~i~  287 (287)
T d1pgua2         238 NIFIYSVKRPMKI----IKALNAHKDGVNNLLWETPSTL-----VS-SGADACIKRWNVV  287 (287)
T ss_dssp             CEEEEESSCTTCC----EEETTSSTTCEEEEEEEETTEE-----EE-EETTSCEEEEEEC
T ss_pred             eEEEEECCCCCeE----EEEeCCCCCCeEEEEECCCCEE-----EE-EECCCeEEEEEEC
Confidence            9999999764322    3456789999999999998753     55 4468999999874

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-28  Score=218.13  Aligned_cols=234  Identities=16%  Similarity=0.294  Sum_probs=198.1

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|++.+++++..++.+.+|+... .. .......|...+.++.|++++..+++++.|+.+++|++....    
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----  134 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQG-FE-CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY----  134 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTS-SC-EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----
T ss_pred             cEEEEeeecccccccccccccccccccccc-cc-cccccccccccceeeeccCCCceEEeeccCcceeEeecccce----
Confidence            499999999999999999999999999886 33 333335889999999999999999999999999999998332    


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                           ....+.+|. ..+.+++|+|++++|++++.|+ .|++|++.+++... +..+...+.++
T Consensus       135 ---------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~-~v~~~~~~~~~~~~~~~~~~~~i~~~  191 (317)
T d1vyhc1         135 ---------------------CVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRHVVECI  191 (317)
T ss_dssp             ---------------------EEEEEECCS-SCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             ---------------------eeeEEccCC-CcceeeecccCCCEEEEEeCCC-eEEEEeeccceeeEEEecCCCCceEE
Confidence                                 344566675 7899999999999999999998 99999999887665 45677889999


Q ss_pred             EEecCC--------------------CeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCce
Q 013347          260 KWSPTG--------------------DYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  318 (444)
Q Consensus       260 ~~sp~~--------------------~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~  318 (444)
                      +|+|++                    .++++++.|+.|++||+++++. ..+.+|...|.+++|+|++++|++++. ++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~  270 (317)
T d1vyhc1         192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKT  270 (317)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TTE
T ss_pred             EEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC-CCe
Confidence            988754                    4688999999999999999887 557789999999999999999987654 466


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      +..|++.             +.+.+.++.+|. .|++++|+|++++|++++.|      |+|+|||
T Consensus       271 i~iwd~~-------------~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~D------g~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYK-------------NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWE  317 (317)
T ss_dssp             EEEECCT-------------TSCCCEEEECCSSCEEEEEECSSSSCEEEEETT------SEEEEEC
T ss_pred             EEEEECC-------------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEeC
Confidence            6666542             345677888888 99999999999999999998      9999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.1e-27  Score=213.70  Aligned_cols=243  Identities=11%  Similarity=0.064  Sum_probs=184.4

Q ss_pred             ecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEE
Q 013347          139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (444)
Q Consensus       139 ~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (444)
                      ..+|.+.|++++|+|+++.|++++.||+|++||++++..                         ...+...+...|++++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-------------------------~~~~~~~h~~~v~~v~   62 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-------------------------NRVFPDVHATMITGIK   62 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------------------EECSSCSCSSCEEEEE
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------------------EEEEcCCCCCcEEEEE
Confidence            369999999999999999999999999999999984332                         2233322347899999


Q ss_pred             EccCCCeEEEEeeCCCeEEEEEcCCCCce----eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCC
Q 013347          219 WGPDGRYLASASYESSSFTIWDVAQGLGT----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS  294 (444)
Q Consensus       219 ~sp~~~~l~~~~~d~~~i~iwd~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  294 (444)
                      |+|++++ ++++.|+ .+++|+.......    ....+...+.+++|+|+++++++++ ++.+++|+......   ....
T Consensus        63 ~~~~g~~-~~~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~---~~~~  136 (299)
T d1nr0a2          63 TTSKGDL-FTVSWDD-HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTE---VPIS  136 (299)
T ss_dssp             ECTTSCE-EEEETTT-EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEE---EECS
T ss_pred             eecccee-eccccee-eEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccccc---cccc
Confidence            9999975 4566787 9999998765322    2344667899999999999877665 57899999543221   2234


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDD  373 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~  373 (444)
                      ..+.+++|+|+++++++++. ++.+..|++...           ....+. ...|. .|.+++|+|++++|++++.+   
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~-dg~i~~~d~~~~-----------~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d---  200 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQ-DSKVHVYKLSGA-----------SVSEVK-TIVHPAEITSVAFSNNGAFLVATDQS---  200 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEET-TSEEEEEEEETT-----------EEEEEE-EEECSSCEEEEEECTTSSEEEEEETT---
T ss_pred             cccccccccccccccccccc-cccccccccccc-----------cccccc-cccccccccccccccccccccccccc---
Confidence            56789999999999987654 467777776431           111122 23444 89999999999999999998   


Q ss_pred             cccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          374 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       374 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                         +.|++||+.++...  .....+.+|...|++++|+|+|++     ++.|..||.|++|++..
T Consensus       201 ---~~i~~~~~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~-----l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         201 ---RKVIPYSVANNFEL--AHTNSWTFHTAKVACVSWSPDNVR-----LATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             ---SCEEEEEGGGTTEE--SCCCCCCCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTC
T ss_pred             ---cccccccccccccc--cccccccccccccccccccccccc-----eEEEcCCCEEEEEECCC
Confidence               99999999876643  223456789999999999999886     78888999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=215.96  Aligned_cols=237  Identities=11%  Similarity=0.073  Sum_probs=177.7

Q ss_pred             ceEEEEEec--CCCeEEEEECCCeEEEEEccCCCCcee------EEecCCCCCeEEEEEeeCCCeEEEEec--CCcEEEE
Q 013347          101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDAC------ILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIW  170 (444)
Q Consensus       101 ~v~~~~~sp--~g~~la~~~~dg~v~iw~~~~~~~~~~------~~~~~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw  170 (444)
                      .|++++|+|  +|++||+|+.||+|+|||+........      .....|.++|.+++|++++..+++++.  ++.+++|
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEE
Confidence            599999998  678999999999999999976321111      112468899999999999888888775  5789999


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe-EEEEeeCCCeEEEEEcCCCCceee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY-LASASYESSSFTIWDVAQGLGTPI  249 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~~i~iwd~~~~~~~~~  249 (444)
                      +.+..                         .+...+.+|. ..|.+++|+|++.+ +++++.|+ .+++||+...+....
T Consensus       145 ~~~~~-------------------------~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~d~-~v~~~d~~~~~~~~~  197 (325)
T d1pgua1         145 SWDSG-------------------------NSLGEVSGHS-QRINACHLKQSRPMRSMTVGDDG-SVVFYQGPPFKFSAS  197 (325)
T ss_dssp             ETTTC-------------------------CEEEECCSCS-SCEEEEEECSSSSCEEEEEETTT-EEEEEETTTBEEEEE
T ss_pred             eeccc-------------------------ccceeeeecc-cccccccccccccceEEEeeccc-cccccccccccccee
Confidence            98733                         2345567775 89999999999876 56788887 999999987654432


Q ss_pred             ----ecCCCCeEEEEEecC-CCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEEC---CCCCEEEEEEcCCceEE
Q 013347          250 ----RRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWD---PEGRMILLAFAGSLTLG  320 (444)
Q Consensus       250 ----~~~~~~v~~~~~sp~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~s---p~g~~l~~~~~~~~~~~  320 (444)
                          ..+...|.+++|+|+ +++|++++.|+.|++||+++++. ..+..|...+.++.|+   |++++|++++ .++.++
T Consensus       198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~  276 (325)
T d1pgua1         198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIR  276 (325)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEE
T ss_pred             cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEE
Confidence                235678999999997 67889999999999999999887 5566777777666665   7888888765 446666


Q ss_pred             EEEeecCCCCcCCCcCCCCcccccccccCC---ceeEEEECCC-CCEEEEEecCCCccccceEEEEEc
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spd-g~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      .|++.             ..+.++.+..+.   .+..+++.+. +.+|++++.|      |+|++||+
T Consensus       277 iwd~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------g~i~vwdl  325 (325)
T d1pgua1         277 VWDVT-------------TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD------GTLNFYEL  325 (325)
T ss_dssp             EEETT-------------TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT------SCEEEEET
T ss_pred             EEECC-------------CCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC------CEEEEEEC
Confidence            66542             234555555444   3444444433 3478899988      99999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3e-26  Score=207.47  Aligned_cols=237  Identities=12%  Similarity=0.187  Sum_probs=190.5

Q ss_pred             ccceEEEEEecCCCeEEEEECCCeEEEEEccCCCCc--eeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ...|++++|+|+++++++++.|+.+.+|+.......  ......+|...........+ ..+.....+.....+......
T Consensus        97 ~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  175 (340)
T d1tbga_          97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQ  175 (340)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTE
T ss_pred             cccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccc-ccccccccccccccccccccc
Confidence            346999999999999999999999999998764222  12222467777766666665 778888888888888876221


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGG  255 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~  255 (444)
                                               .......+ ...+....+.+.+.++++++.|+ .|++||+++++... +..|...
T Consensus       176 -------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~-~v~i~d~~~~~~~~~~~~h~~~  228 (340)
T d1tbga_         176 -------------------------QTTTFTGH-TGDVMSLSLAPDTRLFVSGACDA-SAKLWDVREGMCRQTFTGHESD  228 (340)
T ss_dssp             -------------------------EEEEEECC-SSCEEEEEECTTSSEEEEEETTT-EEEEEETTTTEEEEEECCCSSC
T ss_pred             -------------------------cccccccc-ceeEeeeccccccceeEEeecCc-eEEEEECCCCcEEEEEeCCCCC
Confidence                                     12222333 36889999999999999999998 99999999887765 5568899


Q ss_pred             eEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          256 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                      |.+++|+|++++|++++.|+.|++||++..+...   ...+...+.+++|+|++++|++++. ++.++.|++.       
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~-------  300 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDAL-------  300 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETT-------
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC-CCEEEEEECC-------
Confidence            9999999999999999999999999999877632   3466778999999999999987654 4667766642       


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                            +...+.++.+|. +|++++|+|++++|++|+.|      |+|+|||
T Consensus       301 ------~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D------g~v~iWd  340 (340)
T d1tbga_         301 ------KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD------SFLKIWN  340 (340)
T ss_dssp             ------TCCEEEEECCCSSCEEEEEECTTSSCEEEEETT------SCEEEEC
T ss_pred             ------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccC------CEEEEeC
Confidence                  356677888888 99999999999999999998      9999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=9e-28  Score=219.63  Aligned_cols=288  Identities=12%  Similarity=0.061  Sum_probs=197.5

Q ss_pred             EEEEEec-CCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCCcc
Q 013347          103 QGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAA  179 (444)
Q Consensus       103 ~~~~~sp-~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~~~  179 (444)
                      ..-.||| ||+++|+++ +|.|++|++.. +.. ..  ..|...|.+++|+|||+.|++++.+  ..|++||.+.+.   
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~-~~~-~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~---   77 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSG-TYV-LK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---   77 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTS-SBE-EE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCC-CcE-EE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc---
Confidence            3467999 999999876 67999999975 332 22  3789999999999998888887766  479999998332   


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCCCCeEE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSI  258 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v~~  258 (444)
                                             ...+..|. ..+.+++|+|+|++|++++.++ .+++|++.+++.... ..+...+.+
T Consensus        78 -----------------------~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  132 (360)
T d1k32a3          78 -----------------------AEKFEENL-GNVFAMGVDRNGKFAVVANDRF-EIMTVDLETGKPTVIERSREAMITD  132 (360)
T ss_dssp             -----------------------EEECCCCC-CSEEEEEECTTSSEEEEEETTS-EEEEEETTTCCEEEEEECSSSCCCC
T ss_pred             -----------------------EEEeeCCC-ceEEeeeecccccccceecccc-ccccccccccceeeeeecccccccc
Confidence                                   12344454 7899999999999999999998 999999999887664 456778899


Q ss_pred             EEEecCCCeEEEEe----------cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          259 LKWSPTGDYFFAAK----------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       259 ~~~sp~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      ++|+|+|++|+.+.          .++.+++||+.+++...+..+...+..++|+|+|+.|++++.. ..+..|+.....
T Consensus       133 ~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~-~~~~~~d~~~~~  211 (360)
T d1k32a3         133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYR-SLDPSPDRVVLN  211 (360)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESC-CCCCEECSSSSC
T ss_pred             hhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCC-CceEcccccccc
Confidence            99999999998654          2346999999999887777888889999999999999977543 333333221100


Q ss_pred             CC-----------------------cCCCcC-----CCCc--ccccccccCC-ceeEEEECCCCCEEEEEecCCC-----
Q 013347          329 PS-----------------------LDAHLL-----PVDL--PDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGD-----  372 (444)
Q Consensus       329 ~~-----------------------~~~~~~-----~~~~--~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~-----  372 (444)
                      ..                       .+....     ....  ..+..+.... ....+...+++...+.....+.     
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (360)
T d1k32a3         212 FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY  291 (360)
T ss_dssp             EECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHH
T ss_pred             eeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEE
Confidence            00                       000000     0000  0000011111 2333444444333322222111     


Q ss_pred             --ccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          373 --DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       373 --~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                        ...++.|++||+++++..         .|.+.|.+++|||||++     |+++..||.|++|++.-
T Consensus       292 ~~~~~~~~i~~~d~~~~~~~---------~~~~~v~~~~~SpDG~~-----l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         292 QGAPEKGVLLKYDVKTRKVT---------EVKNNLTDLRLSADRKT-----VMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             HCCCCCEEEEEEETTTCCEE---------EEEEEEEEEEECTTSCE-----EEEEETTSCEEEEESSC
T ss_pred             EecCCCCEEEEEECCCCeEE---------EecCCcCEEEECCCCCE-----EEEEECCCeEEEEECCC
Confidence              012389999999987653         12234789999999987     78888999999998753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.7e-25  Score=195.41  Aligned_cols=267  Identities=11%  Similarity=0.119  Sum_probs=193.8

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      +|+|++  +||++||+|+.||+|+|||+.+ ++....+ .+|.+.|++++|  +++.|++++.|+.|++|++........
T Consensus        17 ~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l-~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          17 GVYCLQ--YDDQKIVSGLRDNTIKIWDKNT-LECKRIL-TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             CEEEEE--CCSSEEEEEESSSCEEEEESSS-CCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CEEEEE--EcCCEEEEEeCCCeEEEEECCC-CcEEEEE-ecCCCCEeeeec--ccceeeccccccccccccccccccccc
Confidence            588865  5899999999999999999987 5655555 589999999987  456888999999999999984332211


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee----eecCCCCe
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP----IRRGFGGL  256 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~----~~~~~~~v  256 (444)
                                               ...+   ......+.+....++++..++ .+.+|+........    ...+...+
T Consensus        91 -------------------------~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v  141 (293)
T d1p22a2          91 -------------------------LIHH---CEAVLHLRFNNGMMVTCSKDR-SIAVWDMASPTDITLRRVLVGHRAAV  141 (293)
T ss_dssp             -------------------------ECCC---CSCEEEEECCTTEEEEEETTS-CEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             -------------------------cccc---ccccccccccccceeeccccc-ceeEeecccccccccccccccccccc
Confidence                                     1111   222334455667888888887 99999998765432    33456777


Q ss_pred             EEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCc
Q 013347          257 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       257 ~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ..+.+.  ...+++++.|+.|++||+++++. ..+.++...+..+.++  +..++++. .++.+..|++.          
T Consensus       142 ~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~----------  206 (293)
T d1p22a2         142 NVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIE----------  206 (293)
T ss_dssp             EEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETT----------
T ss_pred             ccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEecc----------
Confidence            777665  45788899999999999999887 4566788888877775  45677554 44666666643          


Q ss_pred             CCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE----EEEEeeeeeCCCCCCcceee
Q 013347          336 LPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI----SLSLIGFIRGPGDNPKPVAF  410 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~i~~v~~  410 (444)
                         ....+....++. .+..  +++++.+|++++.|      |.|++||+......    ....+..+.+|.+.|++++|
T Consensus       207 ---~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~  275 (293)
T d1p22a2         207 ---CGACLRVLEGHEELVRC--IRFDNKRIVSGAYD------GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF  275 (293)
T ss_dssp             ---TCCEEEEECCCSSCEEE--EECCSSEEEEEETT------SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred             ---cceeeeeecccceeeee--ccccceEEEEEcCC------CEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE
Confidence               234455556665 5543  56788999999998      99999997532110    11234567899999999988


Q ss_pred             eeCCCCCCCceEEEEeccceeeeee
Q 013347          411 SFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       411 spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +  +++     |+.|..||.|++|+
T Consensus       276 d--~~~-----l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         276 D--EFQ-----IVSSSHDDTILIWD  293 (293)
T ss_dssp             C--SSC-----EEECCSSSEEEEEC
T ss_pred             c--CCE-----EEEEecCCEEEEeC
Confidence            4  444     67777899999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.5e-23  Score=186.40  Aligned_cols=266  Identities=15%  Similarity=0.121  Sum_probs=199.9

Q ss_pred             EEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeeccccccccccc
Q 013347          115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALS  193 (444)
Q Consensus       115 a~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  193 (444)
                      ++.+.|++|.|||+++ ++....+.  ....+..++|+|||+++++++ .++.|++||+.+..                 
T Consensus         6 V~~~~~~~v~v~D~~t-~~~~~~i~--~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-----------------   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTS-NKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-----------------   65 (301)
T ss_dssp             EEETTTTEEEEEETTT-TEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-----------------
T ss_pred             EEECCCCEEEEEECCC-CeEEEEEE--CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-----------------
Confidence            3466899999999988 55554443  345688999999988886555 57999999998432                 


Q ss_pred             cCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEe
Q 013347          194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAK  272 (444)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~  272 (444)
                              .+..+..+  ..+..++|+++++.+++++.++..+.+|+..+++......+.....+++|+|+++.++ ++.
T Consensus        66 --------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          66 --------VIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             --------EEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET
T ss_pred             --------eeeeeecc--ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeec
Confidence                    33444544  4678999999999887776655599999999988777777778889999999999875 555


Q ss_pred             cCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCce
Q 013347          273 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  352 (444)
Q Consensus       273 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  352 (444)
                      .++.+.+|+..+.+......+...+..+.++|++..++++..+......+...             .......+..+..+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  202 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-------------TNSVIDTVKVEAAP  202 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-------------TTEEEEEEECSSEE
T ss_pred             cccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccc-------------ceeeeecccccCCc
Confidence            68889999999988766555666789999999999999887665554444321             12233334444467


Q ss_pred             eEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceee
Q 013347          353 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  432 (444)
Q Consensus       353 ~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~  432 (444)
                      ..++|+++++.++++..+..   ++.|++||+.+++..     ..+.. ...+.+++|||||++    ++..+..+|.|.
T Consensus       203 ~~~~~~~~g~~~~v~~~~~~---~~~v~v~D~~t~~~~-----~~~~~-~~~~~~va~spdg~~----l~va~~~~~~i~  269 (301)
T d1l0qa2         203 SGIAVNPEGTKAYVTNVDKY---FNTVSMIDTGTNKIT-----ARIPV-GPDPAGIAVTPDGKK----VYVALSFCNTVS  269 (301)
T ss_dssp             EEEEECTTSSEEEEEEECSS---CCEEEEEETTTTEEE-----EEEEC-CSSEEEEEECTTSSE----EEEEETTTTEEE
T ss_pred             ceeeccccccccccccccce---eeeeeeeecCCCeEE-----EEEcC-CCCEEEEEEeCCCCE----EEEEECCCCeEE
Confidence            88999999999887765532   278999999998765     23333 345789999999997    345667789999


Q ss_pred             eeee
Q 013347          433 TYPL  436 (444)
Q Consensus       433 ~~~~  436 (444)
                      +|++
T Consensus       270 v~D~  273 (301)
T d1l0qa2         270 VIDT  273 (301)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9876

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.5e-24  Score=192.72  Aligned_cols=256  Identities=13%  Similarity=0.134  Sum_probs=172.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|+|+ .+|++++.|+.|++|+..............+........+++++..+++++.|+.|++|++........
T Consensus        55 ~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          55 GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence            3999999986 579999999999999998732222222223344456667788877788888899999999975432221


Q ss_pred             eecccccc----------------------------ccc--cccCCCCc--------eEEEEEeeccCCCceEEEEEccC
Q 013347          181 VRSGAASF----------------------------LGA--LSRGPGTR--------WTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       181 ~~~~~~~~----------------------------~~~--~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ........                            .+.  +....+..        ........++. ..+.++.|+|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~  212 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHE  212 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETT
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc-ccccccccccc
Confidence            11000000                            000  00011111        12334455554 68899999999


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEE-
Q 013347          223 GRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA-  300 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~-  300 (444)
                      ++++++++.|+ .|++||++++.... +..|...|.+++|+  +++|++++.||.|++||+++.... +..|...+.++ 
T Consensus       213 ~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~  288 (355)
T d1nexb2         213 RKRCISASMDT-TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAIT  288 (355)
T ss_dssp             TTEEEEEETTS-CEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCC
T ss_pred             ceeeecccccc-eEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee-cccccCCceEEE
Confidence            99999999998 99999999987765 55678899999886  578999999999999999987653 33444555544 


Q ss_pred             EECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccc-ccccCC-ceeEEEECCCCCEEEEEecCCCccccce
Q 013347          301 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGL  378 (444)
Q Consensus       301 ~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~  378 (444)
                      .+++++++++++.  ++.++.|++.             +++.+. .+.+|. .|.+++|+|+ .++++++.|      |+
T Consensus       289 ~~~~~~~~l~~g~--d~~i~vwd~~-------------tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d------g~  346 (355)
T d1nexb2         289 TFYVSDNILVSGS--ENQFNIYNLR-------------SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD------GQ  346 (355)
T ss_dssp             EEEECSSEEEEEE--TTEEEEEETT-------------TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS------SC
T ss_pred             EEcCCCCEEEEEe--CCEEEEEECC-------------CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC------Cc
Confidence            5677877776553  3566666653             233332 456676 8999999987 467778888      87


Q ss_pred             EEEEEc
Q 013347          379 IAIYDA  384 (444)
Q Consensus       379 i~vwd~  384 (444)
                      ++||.+
T Consensus       347 ~~l~~~  352 (355)
T d1nexb2         347 SFLEIL  352 (355)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            766654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2.1e-24  Score=202.15  Aligned_cols=296  Identities=13%  Similarity=0.079  Sum_probs=195.6

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      .++++.+.||+|+|||+.+ ++....+. .| ..+..++|||||+++++++.|++|++||+.+.+.....          
T Consensus        33 ~~~V~~~~dg~v~vwD~~t-~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~----------   99 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDS-KKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA----------   99 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT-CSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE----------
T ss_pred             EEEEEEcCCCEEEEEECCC-CcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE----------
Confidence            3456778899999999998 66666653 33 46999999999999998889999999999855432211          


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe-eCCCeEEEEEcCCCCceeeec------------CCCCeEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS-YESSSFTIWDVAQGLGTPIRR------------GFGGLSI  258 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~~i~iwd~~~~~~~~~~~------------~~~~v~~  258 (444)
                                .+....+|. ..+.+++|+|||+++++++ .++ .+.+||..++.......            +......
T Consensus       100 ----------~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2         100 ----------EIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPP-QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             ----------EEECCSEEE-EEEECCSTTCTTTEEEEEEEESS-EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             ----------EEeCCCCCc-ceEEeeeecCCCCEEEEeecCCC-eEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence                      111222332 4567788899999987665 555 99999999887654332            2334566


Q ss_pred             EEEecCCCeEEEEec-CCcEEEEECCCCce--eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC------
Q 013347          259 LKWSPTGDYFFAAKF-DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP------  329 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~-d~~v~iwd~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~------  329 (444)
                      +.+++++..++.... .+.+.+++......  .....+...+..+.|+|++++++++......+..++......      
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            777777777754443 45666676665543  234467788999999999999998877666665554332100      


Q ss_pred             ----C---------------------cCCC----------cCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCC-C
Q 013347          330 ----S---------------------LDAH----------LLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGG-D  372 (444)
Q Consensus       330 ----~---------------------~~~~----------~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~-~  372 (444)
                          .                     -+..          ......+...++.+|. .+..++|+|||++|++....+ +
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence                0                     0000          0011223455677887 899999999999999643211 1


Q ss_pred             ccccceEEEEEcCCCCeEEE-EEee---eeeCCCCCCcceeeeeCCCCCCCceEEEEe----ccceeeeeee
Q 013347          373 DIYKGLIAIYDARRTPLISL-SLIG---FIRGPGDNPKPVAFSFHDKFKQGPLLSVCW----SSGFCCTYPL  436 (444)
Q Consensus       373 ~~~d~~i~vwd~~~~~~~~~-~~~~---~~~~~~~~i~~v~~spdg~~~~~~~l~~~~----~~g~i~~~~~  436 (444)
                      ...|++|+|||+++++.... .+..   .+..|...+.+++|||||++    ++..+|    .+|.|.+|+.
T Consensus       328 ~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~----i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         328 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE----VWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE----EEEEECCCTTSCCEEEEEET
T ss_pred             cccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE----EEEEEecCCCCCCeEEEEEC
Confidence            11238999999998775421 1111   12345667888999999997    233344    4677887763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=3.8e-24  Score=195.20  Aligned_cols=158  Identities=10%  Similarity=0.040  Sum_probs=128.7

Q ss_pred             ccceEEEEEecCCCeEEEEECCC--eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCC
Q 013347           99 EVDLQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (444)
Q Consensus        99 ~~~v~~~~~sp~g~~la~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~  176 (444)
                      ...|++++|+|||++|++++.+.  .|++|++.+ +... .+ ..|...|.+++|+|+++++++++.++.+++|++....
T Consensus        42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-~~~~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-CCEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-CcEE-Ee-eCCCceEEeeeecccccccceeccccccccccccccc
Confidence            34599999999999999877553  799999986 3333 33 5899999999999999999999999999999998332


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC---------CeEEEEEcCCCCce
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---------SSFTIWDVAQGLGT  247 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---------~~i~iwd~~~~~~~  247 (444)
                                               ....+..|. ..+.+++|+|+|++|+.+..++         +.+++||+.+++..
T Consensus       119 -------------------------~~~~~~~~~-~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3         119 -------------------------PTVIERSRE-AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             -------------------------EEEEEECSS-SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             -------------------------eeeeeeccc-ccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence                                     233344553 7889999999999998764322         26899999998877


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  285 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~  285 (444)
                      .+..+...+..++|+|+|++|++++.++.+.+||....
T Consensus       173 ~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         173 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             eecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence            77778888999999999999999999999999987543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.7e-24  Score=198.39  Aligned_cols=192  Identities=13%  Similarity=0.150  Sum_probs=147.3

Q ss_pred             ccceEEEEEecC-----CCeEEEEECCCeEEEEEccCCCCce----------------eEEecCCCCCeEEEEEeeCCCe
Q 013347           99 EVDLQGVSWHQH-----KHIVAFISGSTQVIVRDYEDSGKDA----------------CILTSDSQRDVKVLEWRPNGGR  157 (444)
Q Consensus        99 ~~~v~~~~~sp~-----g~~la~~~~dg~v~iw~~~~~~~~~----------------~~~~~~~~~~v~~l~~s~~~~~  157 (444)
                      ...+..++|.++     +.++++++.||.+++|++.......                ......+...+.+++|+|+ +.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g~  197 (393)
T d1sq9a_         119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-GL  197 (393)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-SE
T ss_pred             CCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCC-CE
Confidence            346788888876     4678999999999999986421100                0011245667899999999 57


Q ss_pred             EEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC--e
Q 013347          158 SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--S  235 (444)
Q Consensus       158 ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--~  235 (444)
                      +++++.|++|+|||+.+.+....+.                   ....+.+|. ..|.+++|+|+|++|++++.|+.  .
T Consensus       198 lasgs~Dg~i~iwd~~~~~~~~~~~-------------------~~~~l~~h~-~~V~~l~~spdg~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         198 IATGFNNGTVQISELSTLRPLYNFE-------------------SQHSMINNS-NSIRSVKFSPQGSLLAIAHDSNSFGC  257 (393)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEE-------------------CCC---CCC-CCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred             EEEEeCCCcEEEEeecccccccccc-------------------ccccccccc-ceEEEcccccccceeeeecCCCCcce
Confidence            8888889999999998543322221                   122456675 89999999999999999999861  4


Q ss_pred             EEEEEcCCCCceee--------------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCcee--
Q 013347          236 FTIWDVAQGLGTPI--------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT--  298 (444)
Q Consensus       236 i~iwd~~~~~~~~~--------------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~--  298 (444)
                      |++||+++++....              .+|.+.|++++|+|++++|++++.|++|++||++++++ ..+.+|...|.  
T Consensus       258 i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~  337 (393)
T d1sq9a_         258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIE  337 (393)
T ss_dssp             EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSG
T ss_pred             eeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCC
Confidence            89999998865542              25888999999999999999999999999999999988 55778988775  


Q ss_pred             --EEEECCCCCEEEE
Q 013347          299 --GATWDPEGRMILL  311 (444)
Q Consensus       299 --~~~~sp~g~~l~~  311 (444)
                        .++|+|++..++.
T Consensus       338 ~~~~~~~~~~~~~~~  352 (393)
T d1sq9a_         338 EDILAVDEHGDSLAE  352 (393)
T ss_dssp             GGCCCBCTTSCBCSS
T ss_pred             ccEEEECCCCCEEEE
Confidence              5889999988764

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.9e-23  Score=184.71  Aligned_cols=225  Identities=12%  Similarity=0.162  Sum_probs=170.2

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcc
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~  179 (444)
                      ..|.++++++++ .+++++.|+++++|++...         .....+..+.++++ +.+++.+.++.+.+|+......  
T Consensus        47 ~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--  113 (287)
T d1pgua2          47 NLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH---------EFGSQPKVASANND-GFTAVLTNDDDLLILQSFTGDI--  113 (287)
T ss_dssp             SCEEEEECCSTT-CCEEEETTTEEEETTEEEE---------ECSSCEEEEEECSS-SEEEEEETTSEEEEEETTTCCE--
T ss_pred             CCEEEEEecCCC-eEEEEeecccccccccccc---------ccccceeeeeeccC-CceEEEeecccceeeeccceee--
Confidence            459999998765 5788999999999988641         22345778888888 6677777888888998873322  


Q ss_pred             eeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee--ecCCCCeE
Q 013347          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI--RRGFGGLS  257 (444)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~--~~~~~~v~  257 (444)
                                             ...+..+  ..  ..+++++++.+++++.+++.+++|++...+....  ..+...+.
T Consensus       114 -----------------------~~~~~~~--~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~  166 (287)
T d1pgua2         114 -----------------------IKSVRLN--SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS  166 (287)
T ss_dssp             -----------------------EEEEECS--SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred             -----------------------eeecccc--ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCcee
Confidence                                   2223222  23  3456778889998888876899999876544332  23567899


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCcee--ccccCCCceeEEEECCCC----------CEEEEEEcCCceEEEEEee
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEG----------RMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v~~~~~sp~g----------~~l~~~~~~~~~~~~~~~~  325 (444)
                      +++|+|++++|++|+.||.|++||+.+++..  .+..|...|.+++|+|.+          .+++++ +.++.++.|++.
T Consensus       167 ~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg-s~D~~i~iw~~~  245 (287)
T d1pgua2         167 YISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG-SLDTNIFIYSVK  245 (287)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE-ETTSCEEEEESS
T ss_pred             EEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee-cCCCeEEEEECC
Confidence            9999999999999999999999999988763  466899999999999865          466655 455777777753


Q ss_pred             cCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          326 SKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      .            ....+..+.+|. .|++++|+|++ .|++++.|      ++|++|++
T Consensus       246 ~------------~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D------~~v~iW~i  286 (287)
T d1pgua2         246 R------------PMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD------ACIKRWNV  286 (287)
T ss_dssp             C------------TTCCEEETTSSTTCEEEEEEEETT-EEEEEETT------SCEEEEEE
T ss_pred             C------------CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC------CeEEEEEE
Confidence            2            234456677888 99999999987 58888888      99999996

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.3e-21  Score=173.67  Aligned_cols=289  Identities=11%  Similarity=0.122  Sum_probs=195.2

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      .+++++.|++|+||+++..+.........|.+.+..|+|+|||++|++++. |+.|++|++........+.         
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~---------   76 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA---------   76 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE---------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe---------
Confidence            346667999999999986544443333478889999999999988877765 6999999998443322211         


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee---eecCCCCeEEEEEecCCCeE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGFGGLSILKWSPTGDYF  268 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~---~~~~~~~v~~~~~sp~~~~l  268 (444)
                                  .... + ...+..++|+|||++|++++.+++.+.+|+........   ...+...+.++.++|+++++
T Consensus        77 ------------~~~~-~-~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          77 ------------AESA-L-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             ------------EEEE-C-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             ------------eecc-c-CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence                        1111 1 24678899999999999998766699999987765433   33456678899999999998


Q ss_pred             EEEec-CCcEEEEECCCCceec-------cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCc
Q 013347          269 FAAKF-DGTFYLWETNTWTSEP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  340 (444)
Q Consensus       269 ~~~~~-d~~v~iwd~~~~~~~~-------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      +.++. +..+.+|+........       ..........++|++++..++...........+..........      ..
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~  216 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE------CV  216 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE------EE
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee------ee
Confidence            77664 5679999987654311       1234456788999999999887776666666655432111000      00


Q ss_pred             cccc----ccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          341 PDIV----SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       341 ~~~~----~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      ..+.    ..........+++++|++++++.....     +.+.+|++....... ... ........+.+++|||||++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~-~~~~~~~~p~~~a~spDGk~  289 (333)
T d1ri6a_         217 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVL-SKE-GFQPTETQPRGFNVDHSGKY  289 (333)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCE-EEE-EEEECSSSCCCEEECTTSSE
T ss_pred             eeeeeeecCCCccccceeEEEecccCceeeecccC-----CeEEEEEEcCCCCEE-EEE-EEeCCCCCeeEEEEeCCCCE
Confidence            0011    111122567789999999888776653     789999987644321 111 12234566889999999998


Q ss_pred             CCCceEEEEeccceeeeeeeeeecc
Q 013347          417 KQGPLLSVCWSSGFCCTYPLIFRSH  441 (444)
Q Consensus       417 ~~~~~l~~~~~~g~i~~~~~~~~~~  441 (444)
                          +++.+..++.|.+|.+...+.
T Consensus       290 ----l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         290 ----LIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             ----EEEECTTTCEEEEEEEETTTT
T ss_pred             ----EEEEECCCCeEEEEEEECCCC
Confidence                344455678999998765443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3e-22  Score=187.24  Aligned_cols=189  Identities=14%  Similarity=0.080  Sum_probs=139.7

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      -++++.+.+|+|.|||..+ ++....+. .+ ..+..++|||||+++++++.|+.|++||+.+.+.....          
T Consensus        33 ~~~v~~~d~g~v~v~D~~t-~~v~~~~~-~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~----------   99 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGST-YEIKTVLD-TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA----------   99 (432)
T ss_dssp             EEEEEETTTTEEEEEETTT-CCEEEEEE-CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE----------
T ss_pred             EEEEEEcCCCEEEEEECCC-CcEEEEEe-CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE----------
Confidence            3457888999999999998 66666664 33 36999999999999998888999999999854332111          


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeE-EEEeeCCCeEEEEEcCCCCceeeec------------CCCCeEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL-ASASYESSSFTIWDVAQGLGTPIRR------------GFGGLSI  258 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~------------~~~~v~~  258 (444)
                                .+....+|. ..+.+..|+|||++| ++++.++ +|++||..+++......            .......
T Consensus       100 ----------~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~-~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
T d1qksa2         100 ----------EIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPP-QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  167 (432)
T ss_dssp             ----------EEECCSEEE-EEEECCSTTCTTTEEEEEEEETT-EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             ----------EEecCCCCC-CeEEecccCCCCCEEEEEcCCCC-eEEEEeCccccceeeeccCCccccceeccCCCceeE
Confidence                      111122232 456667788999987 5566676 99999999987654321            3356678


Q ss_pred             EEEecCCCeE-EEEecCCcEEEEECCCCceec--cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEee
Q 013347          259 LKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  325 (444)
Q Consensus       259 ~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~  325 (444)
                      +.++|++..+ ++...++.|.+||..+.+...  ...+...+..++|+|+|+++++++..+..+..++..
T Consensus       168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             EEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            8999999887 566678999999998876532  235667789999999999999888777677766653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=7.5e-21  Score=168.60  Aligned_cols=241  Identities=12%  Similarity=0.114  Sum_probs=180.3

Q ss_pred             ceEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      .+..++|+|||++|+ +++.++.|++||+.+ ++....+. .+ ..+..++|++++..+++++. ++.+.+|+.....  
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  107 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVP-AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--  107 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeee-cc-ccccccccccccccccccccccceeeecccccce--
Confidence            478899999999885 556889999999987 44444442 33 35789999999887777665 5889999987332  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI  258 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~  258 (444)
                                             ....+..+  ..+.++.|+|+++.++.+...+..+.+|+..+............+..
T Consensus       108 -----------------------~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (301)
T d1l0qa2         108 -----------------------VAGTVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG  162 (301)
T ss_dssp             -----------------------EEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             -----------------------eeeecccc--ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceE
Confidence                                   22333333  57789999999998876665444899999999888877777788999


Q ss_pred             EEEecCCCeEEEEecC-CcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcC--CceEEEEEeecCCCCcCCCc
Q 013347          259 LKWSPTGDYFFAAKFD-GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFASKPPSLDAHL  335 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~  335 (444)
                      ++++|+++.+++++.+ +.+.+|+....+..........+..++|+++++.++++..+  ...+..|+..          
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~----------  232 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG----------  232 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT----------
T ss_pred             EEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecC----------
Confidence            9999999988777654 67778888777765555556678899999999988766543  2345555532          


Q ss_pred             CCCCcccccccccCCceeEEEECCCCCEEEEE-ecCCCccccceEEEEEcCCCCeE
Q 013347          336 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVS-YKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                         +.+.+..+..+..+.+++|+|||++|+++ +.+      ++|++||+++++++
T Consensus       233 ---t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~------~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         233 ---TNKITARIPVGPDPAGIAVTPDGKKVYVALSFC------NTVSVIDTATNTIT  279 (301)
T ss_dssp             ---TTEEEEEEECCSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEE
T ss_pred             ---CCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC------CeEEEEECCCCeEE
Confidence               23444555555578999999999988544 445      89999999998776

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.4e-22  Score=179.95  Aligned_cols=254  Identities=11%  Similarity=0.037  Sum_probs=174.1

Q ss_pred             EecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       138 ~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      +..+|.+.|++|+|+|+++.|++++.||+|+|||++.......                      .....+|. ..|.++
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~----------------------~~~~~~h~-~~V~~v   62 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD----------------------LLQSLRYK-HPLLCC   62 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE----------------------EEEEEECS-SCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceE----------------------EEEecCCC-CCEEEE
Confidence            4469999999999999999999999999999999974433221                      12223464 899999


Q ss_pred             EEccC-CCeEEEEeeCCCeEEEEEcCCCCceeeecC--CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec-----
Q 013347          218 SWGPD-GRYLASASYESSSFTIWDVAQGLGTPIRRG--FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----  289 (444)
Q Consensus       218 ~~sp~-~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~-----  289 (444)
                      +|+|+ +.+|++|+.|+ .|++|++...........  ........+.++...+++++.++.+++||++++....     
T Consensus        63 ~f~~~~~~~l~sg~~d~-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~  141 (342)
T d1yfqa_          63 NFIDNTDLQIYVGTVQG-EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             EEEESSSEEEEEEETTS-CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred             EEeCCCCCEEEEccccc-ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecc
Confidence            99986 55788999998 999999998876654432  2344556667788899999999999999987544311     


Q ss_pred             cc--cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEE-CCCCCEEE
Q 013347          290 WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAW-DASGERLA  365 (444)
Q Consensus       290 ~~--~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-spdg~~l~  365 (444)
                      ..  ..........+.+.+..+++++. ++.+..|++.....          ........... .+....+ ..++..++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         142 LNSNNTKVKNKIFTMDTNSSRLIVGMN-NSQVQWFRLPLCED----------DNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             SCSSSSSSCCCEEEEEECSSEEEEEES-TTEEEEEESSCCTT----------CCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             cccccccceeeeeeeeccCCceeeecC-CCcEEEEecccCcc----------cceeeeecccccceeeeEeecCCCCEEE
Confidence            11  12233456677788888886654 46777777543210          01111111222 4455554 45678899


Q ss_pred             EEecCCCccccceEEEEEcCCCCeE-------EEEEe---eeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeee
Q 013347          366 VSYKGGDDIYKGLIAIYDARRTPLI-------SLSLI---GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       366 ~~~~d~~~~~d~~i~vwd~~~~~~~-------~~~~~---~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~  435 (444)
                      +++.+      |.+.+|+.......       .....   ....+|...+.+++|+|++++     |+.|.+||.|++|+
T Consensus       211 ~~s~d------g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-----lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         211 CSSID------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-----LYTAGSDGIISCWN  279 (342)
T ss_dssp             EEETT------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-----EEEEETTSCEEEEE
T ss_pred             eecCC------CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-----EEEECCCCEEEEEE
Confidence            99988      99999987643211       01111   112345667789999999886     78888999999998


Q ss_pred             ee
Q 013347          436 LI  437 (444)
Q Consensus       436 ~~  437 (444)
                      +.
T Consensus       280 ~~  281 (342)
T d1yfqa_         280 LQ  281 (342)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-21  Score=173.84  Aligned_cols=238  Identities=13%  Similarity=0.157  Sum_probs=165.6

Q ss_pred             CceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCC
Q 013347          133 KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE  212 (444)
Q Consensus       133 ~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (444)
                      +...++ .+|.+.|.+ +++++|++|++++.||+|+|||+.+.                         +++..+.+|. .
T Consensus         7 ~~~~~l-~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~-------------------------~~~~~~~~h~-~   58 (342)
T d2ovrb2           7 KSPKVL-KGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG-------------------------KCLRTLVGHT-G   58 (342)
T ss_dssp             CCCEEE-ECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC-------------------------CEEEECCCCS-S
T ss_pred             CcCEEE-CCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC-------------------------CEEEEEeCCC-C
Confidence            444445 599999875 46778889999999999999999832                         2456677886 8


Q ss_pred             ceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CC-------------------------------------
Q 013347          213 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FG-------------------------------------  254 (444)
Q Consensus       213 ~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~-------------------------------------  254 (444)
                      .|.+++|+|+  +|++++.|+ .+++|+............ ..                                     
T Consensus        59 ~V~~v~~~~~--~l~s~s~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  135 (342)
T d2ovrb2          59 GVWSSQMRDN--IIISGSTDR-TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG  135 (342)
T ss_dssp             CEEEEEEETT--EEEEEETTS-CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred             CEEEEEeCCC--ccccceecc-cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeec
Confidence            9999999874  899999998 999999876522211110 00                                     


Q ss_pred             -CeEEEEEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcC
Q 013347          255 -GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  332 (444)
Q Consensus       255 -~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~  332 (444)
                       ......+.+....+++++.|+.|++||.+..+. ..+.+|...+..+  ++++.++++++ .++.+..|++.       
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~-------  205 (342)
T d2ovrb2         136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVE-------  205 (342)
T ss_dssp             CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETT-------
T ss_pred             ccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeecc-------
Confidence             011123334556778888899999999987766 4455666655554  45677888664 44666666643       


Q ss_pred             CCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeC---CCCCCcce
Q 013347          333 AHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG---PGDNPKPV  408 (444)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~i~~v  408 (444)
                            ....+..+.+|. .+.+++++  +++|++++.|      +.|++||+...+..     ..+.+   |...+.++
T Consensus       206 ------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d------~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~  266 (342)
T d2ovrb2         206 ------TGNCIHTLTGHQSLTSGMELK--DNILVSGNAD------STVKIWDIKTGQCL-----QTLQGPNKHQSAVTCL  266 (342)
T ss_dssp             ------TCCEEEEECCCCSCEEEEEEE--TTEEEEEETT------SCEEEEETTTCCEE-----EEECSTTSCSSCEEEE
T ss_pred             ------cceeeeEecccccceeEEecC--CCEEEEEcCC------CEEEEEeccccccc-----ccccccceeeeceeec
Confidence                  344566777777 77777765  5699999998      99999999987654     23333   44444444


Q ss_pred             eeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          409 AFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       409 ~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ++  +++     +++.|..||.|++|++.
T Consensus       267 ~~--~~~-----~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         267 QF--NKN-----FVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EE--CSS-----EEEEEETTSEEEEEETT
T ss_pred             cc--CCC-----eeEEEcCCCEEEEEECC
Confidence            44  443     47788899999999874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=7e-22  Score=178.16  Aligned_cols=282  Identities=11%  Similarity=0.067  Sum_probs=182.6

Q ss_pred             CeEEEEECCCeEEEEEccCCCCceeEEe-cCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeeccccccc
Q 013347          112 HIVAFISGSTQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFL  189 (444)
Q Consensus       112 ~~la~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~  189 (444)
                      +++++++.|++|+|||+.+ .+....+. ..+...+.+++|+|||+++++++ .++.|.+||+.+.+....+....    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~----   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST----   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB----
T ss_pred             eEEEEEcCCCEEEEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC----
Confidence            5799999999999999998 44444443 23456788999999988876654 57999999998554333322110    


Q ss_pred             cccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------------CCCeEEEEEcCCCCceeeecCCCCeE
Q 013347          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------------ESSSFTIWDVAQGLGTPIRRGFGGLS  257 (444)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------d~~~i~iwd~~~~~~~~~~~~~~~v~  257 (444)
                                      ...+ ...+..++|+|++++++++..            +. .+.+||..+++..........+.
T Consensus        77 ----------------~~~~-~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~  138 (337)
T d1pbyb_          77 ----------------PEER-VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT-RVALYDAETLSRRKAFEAPRQIT  138 (337)
T ss_dssp             ----------------TTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEETTTTEEEEEEECCSSCC
T ss_pred             ----------------Cccc-ccceeeEEEcCCCcEEEEeecCCcceeeecccccc-ceeeccccCCeEEEeccccCCce
Confidence                            0000 134567999999999988764            44 78899999988877777777888


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe---ecCCCCcC--
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF---ASKPPSLD--  332 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~---~~~~~~~~--  332 (444)
                      .++|+|+|+++++++.  .+.+||..+++...............++|++..+...............   +.......  
T Consensus       139 ~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T d1pbyb_         139 MLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             CEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             EEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecc
Confidence            9999999999988864  4788999988764322222222333444444433222222111111111   00000000  


Q ss_pred             ----CCcCCC-Ccc-cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCC
Q 013347          333 ----AHLLPV-DLP-DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  405 (444)
Q Consensus       333 ----~~~~~~-~~~-~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i  405 (444)
                          ...+.. ... ....+..+. .+..+.++|++.+++.+.        +.|++||+++++.+.     .+. +...+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~v~d~~~~~~~~-----~~~-~~~~~  282 (337)
T d1pbyb_         217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--------NVLESFDLEKNASIK-----RVP-LPHSY  282 (337)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--------SEEEEEETTTTEEEE-----EEE-CSSCC
T ss_pred             cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--------ccEEEEECCCCcEEE-----EEc-CCCCE
Confidence                000000 111 111223344 677889999999988763        789999999987762     222 35678


Q ss_pred             cceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          406 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       406 ~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .+++|||||++     |.++..+|.|.+|+..
T Consensus       283 ~~~~~s~dG~~-----l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         283 YSVNVSTDGST-----VWLGGALGDLAAYDAE  309 (337)
T ss_dssp             CEEEECTTSCE-----EEEESBSSEEEEEETT
T ss_pred             EEEEECCCCCE-----EEEEeCCCcEEEEECC
Confidence            89999999987     7788899999999863

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=1.9e-21  Score=181.90  Aligned_cols=285  Identities=8%  Similarity=0.040  Sum_probs=180.6

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEE----ecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCC
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY  174 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~----~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~  174 (444)
                      ..+..++|||||++|++++.|+++++||+.+. +.....    ..+|.+.+.+++|+|||+++++++ .++.+++||...
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~-~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCC-ceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            35899999999999999999999999999973 332221    124556677778889998876665 579999999985


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee--eecC
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP--IRRG  252 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~--~~~~  252 (444)
                      ........... ....              ............+.+++++..++....+.+.+.+++........  ...+
T Consensus       141 ~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         141 LEPKQIVSTRG-MTVD--------------TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             CCEEEEEECCE-ECSS--------------SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred             cceeEEeeccC-CCcc--------------ceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence            44333222110 0000              00001124567788889998888877766588888877665433  4456


Q ss_pred             CCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCce--------------------------------------------
Q 013347          253 FGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTS--------------------------------------------  287 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~--------------------------------------------  287 (444)
                      ...+..++|+|++++++++. .+..+.+++..+++.                                            
T Consensus       206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~  285 (426)
T d1hzua2         206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP  285 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCT
T ss_pred             CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccc
Confidence            77888999999999886654 344555565543321                                            


Q ss_pred             -----------eccccCCCceeEEEECCCCCEEEEEEc------CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC
Q 013347          288 -----------EPWSSTSGFVTGATWDPEGRMILLAFA------GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  350 (444)
Q Consensus       288 -----------~~~~~~~~~v~~~~~sp~g~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                                 ..+.+|...+..++|+|++++|++...      .+.++..|++.+....  ..+.  .......+..+.
T Consensus       286 ~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~--~~~~--~~~~~~~~~~~~  361 (426)
T d1hzua2         286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK--YQVL--PIAEWADLGEGA  361 (426)
T ss_dssp             TTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC--CEEE--CHHHHHCCCSSC
T ss_pred             cccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC--eEEe--ccchhcccCCCC
Confidence                       123356677899999999999986432      2244556654322100  0000  000011122233


Q ss_pred             -ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          351 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       351 -~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                       .|.+++|||||++++++...+ ...++.|+|||.++.++.     ..+.++.      .++|+|+|
T Consensus       362 ~rv~~~~fSpDGk~i~vs~~~~-~~~~~~i~v~D~~T~k~~-----~~i~~~~------~~tp~Gk~  416 (426)
T d1hzua2         362 KRVVQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKTLKLK-----AVVKDPR------LITPTGKF  416 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEECCC-TTSCCEEEEEETTTTEEE-----EEECCTT------CCSEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEEecC-CCCCCeEEEEECCCCeEE-----EEECCCC------ccCCCceE
Confidence             799999999999875543210 012389999999998765     4455542      56799987

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=1.3e-21  Score=177.03  Aligned_cols=290  Identities=9%  Similarity=0.000  Sum_probs=192.2

Q ss_pred             EEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe-cCCcEEEEecCCCCCcceeec
Q 013347          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRS  183 (444)
Q Consensus       105 ~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~-~dg~v~iw~~~~~~~~~~~~~  183 (444)
                      ++|++++++|++++.+++|.|||+.+ ++....+...|...+.+++|+|||+++++++ .++.|++||+.+.+....+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t-~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCC-CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            47899999999999999999999998 5655555556777889999999988887666 469999999985443332221


Q ss_pred             cccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEee------------CCCeEEEEEcCCCCcee---
Q 013347          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASY------------ESSSFTIWDVAQGLGTP---  248 (444)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------d~~~i~iwd~~~~~~~~---  248 (444)
                      ..                   ....+ ...+..++|+|||+++++++.            +. .+.+|+..+++...   
T Consensus        81 ~~-------------------~~~~~-~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~  139 (346)
T d1jmxb_          81 SS-------------------VPGEV-GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP-RLEVFSTADGLEAKPVR  139 (346)
T ss_dssp             CC-------------------STTEE-EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC-EEEEEEGGGGGGBCCSE
T ss_pred             cc-------------------ccccc-CCceEEEEEecCCCEEEEEecCCcceeeeeccCcc-eEEEEecccceeeeEEE
Confidence            10                   00000 124567999999999987753            44 78999988775443   


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCC
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  328 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~  328 (444)
                      .......+..+.++++++.+++   ++.+.+|++.+++.............+.++|++..++...........+......
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
T d1jmxb_         140 TFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  216 (346)
T ss_dssp             EEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             eeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeee
Confidence            2233455666777777776554   3568999999888754444445566777888887665544443333332221100


Q ss_pred             CCcC-----------CCcCCCC-cc-cccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEE
Q 013347          329 PSLD-----------AHLLPVD-LP-DIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       329 ~~~~-----------~~~~~~~-~~-~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      ....           ...++.. .. .......+. .+..+.+++++.+++....       +.|++||+.+++.+.   
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~v~d~~~~~~~~---  286 (346)
T d1jmxb_         217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-------NRLAKYDLKQRKLIK---  286 (346)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-------SEEEEEETTTTEEEE---
T ss_pred             ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-------CeEEEEECCCCcEEE---
Confidence            0000           0000111 11 112233344 7788899999988887764       579999999987662   


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                        .+. +...+.+++|||||++     +.++..+|.|.+|+..
T Consensus       287 --~~~-~~~~~~~va~s~DG~~-----l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         287 --AAN-LDHTYYCVAFDKKGDK-----LYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             --EEE-CSSCCCEEEECSSSSC-----EEEESBSSEEEEEETT
T ss_pred             --EEc-CCCCEEEEEEcCCCCE-----EEEEeCCCcEEEEECc
Confidence              232 3456899999999987     6777788999999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.3e-20  Score=162.32  Aligned_cols=234  Identities=15%  Similarity=0.236  Sum_probs=167.0

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcce
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~  180 (444)
                      .|++++|  ++++|++|+.|+.|++|++.. +...... ..+..  ....+.+....++++..++.+++|+........ 
T Consensus        57 ~V~~v~~--~~~~l~s~s~D~~i~~~~~~~-~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  129 (293)
T d1p22a2          57 SVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTL-IHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT-  129 (293)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEE-CCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCE-
T ss_pred             CEeeeec--ccceeeccccccccccccccc-ccccccc-ccccc--ccccccccccceeecccccceeEeecccccccc-
Confidence            3888876  678999999999999999987 3333333 22222  233445555788899999999999987433221 


Q ss_pred             eeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEE
Q 013347          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSIL  259 (444)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~  259 (444)
                                           ....+..|. ..+..+.+.  ...+++++.|+ .|++||+++++... +..+...+..+
T Consensus       130 ---------------------~~~~~~~~~-~~v~~~~~~--~~~~~~~s~d~-~i~~~d~~~~~~~~~~~~~~~~v~~~  184 (293)
T d1p22a2         130 ---------------------LRRVLVGHR-AAVNVVDFD--DKYIVSASGDR-TIKVWNTSTCEFVRTLNGHKRGIACL  184 (293)
T ss_dssp             ---------------------EEEEECCCS-SCEEEEEEE--TTEEEEEETTS-EEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             ---------------------ccccccccc-cccccceec--ccccccccCCC-ceeeecCCCCcEEEEEcccccccccc
Confidence                                 223345554 677777765  45678888998 99999999887665 55566777777


Q ss_pred             EEecCCCeEEEEecCCcEEEEECCCCce-eccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCC
Q 013347          260 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  338 (444)
Q Consensus       260 ~~sp~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      .++  +.++++++.|+.|++||+++.+. .....+...+..  +++++.+|++++ .++.+..|++.......    ...
T Consensus       185 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~----~~~  255 (293)
T d1p22a2         185 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA-YDGKIKVWDLVAALDPR----APA  255 (293)
T ss_dssp             EEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE-TTSCEEEEEHHHHTSTT----SCT
T ss_pred             cCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc-CCCEEEEEECCCCcccc----ccC
Confidence            665  67899999999999999998887 345566666654  556778888664 45777877764321100    111


Q ss_pred             CcccccccccCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEE
Q 013347          339 DLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       339 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      ....+..+.+|. .|++++|  ++++|++++.|      |+|+|||
T Consensus       256 ~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~D------g~i~iWD  293 (293)
T d1p22a2         256 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD------DTILIWD  293 (293)
T ss_dssp             TTTEEEEECCCSSCCCCEEE--CSSCEEECCSS------SEEEEEC
T ss_pred             CceeeEEecCCCCCEEEEEE--cCCEEEEEecC------CEEEEeC
Confidence            234567788888 8999998  46789999998      9999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=7e-18  Score=151.49  Aligned_cols=252  Identities=11%  Similarity=0.093  Sum_probs=171.3

Q ss_pred             cceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeE-EecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCC
Q 013347          100 VDLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~-~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~  176 (444)
                      ..+.+++|||||++|++++ .|+.|++|++......... ....+...+..++|+|||+++++++. ++.|.+|+.....
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~  116 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL  116 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccccc
Confidence            3588999999999996655 5899999999864333222 22345566788999999988888876 5789999876321


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-------
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-------  249 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-------  249 (444)
                      ..                       .......+ ...+.++.++|++++++.++.++..|.+|+.........       
T Consensus       117 ~~-----------------------~~~~~~~~-~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  172 (333)
T d1ri6a_         117 PV-----------------------GVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT  172 (333)
T ss_dssp             EE-----------------------EEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred             ce-----------------------ecccccCC-CccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeee
Confidence            11                       11122233 257889999999999998887666899999877643321       


Q ss_pred             ecCCCCeEEEEEecCCCeEEEEe-cCCcEEEEECCCCcee-----cc------ccCCCceeEEEECCCCCEEEEEEcCCc
Q 013347          250 RRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSE-----PW------SSTSGFVTGATWDPEGRMILLAFAGSL  317 (444)
Q Consensus       250 ~~~~~~v~~~~~sp~~~~l~~~~-~d~~v~iwd~~~~~~~-----~~------~~~~~~v~~~~~sp~g~~l~~~~~~~~  317 (444)
                      .........++|++++.+++... ..+...+|+.......     ..      .........++++++++++++......
T Consensus       173 ~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~  252 (333)
T d1ri6a_         173 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS  252 (333)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred             eecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCC
Confidence            12235678899999999886554 5567888876543321     11      123345677899999999988887777


Q ss_pred             eEEEEEeecCCCCcCCCcCCCCcccccccccC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEc--CCCCeE
Q 013347          318 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLI  390 (444)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~--~~~~~~  390 (444)
                      .+..+.+....          ....+...... ..+.+++|+|||++|++++.++     +.|++|++  ++|++.
T Consensus       253 ~~~~~~~~~~~----------~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~-----~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         253 LITVFSVSEDG----------SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEEECTTS----------CCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEE
T ss_pred             eEEEEEEcCCC----------CEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC-----CeEEEEEEECCCCcEE
Confidence            77777764321          01111111112 2577899999999998887653     88999955  566543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=3.6e-19  Score=160.12  Aligned_cols=237  Identities=13%  Similarity=0.068  Sum_probs=160.5

Q ss_pred             ceEEEEEecCCCeEE-EEECCCeEEEEEccCCCCceeEEecC----CCCCeEEEEEeeCCCeEEEEec------------
Q 013347          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSD----SQRDVKVLEWRPNGGRSLSVGC------------  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la-~~~~dg~v~iw~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~ll~~~~------------  163 (444)
                      .+.+++|+|||++++ +++.++.|.+||+.+ ++........    +...+..++|+|+++.++++..            
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence            367899999999875 556899999999998 5554443211    1234567999999888877764            


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      +..+.+||....                         .....+..+  ..+..++|+|+|+++++++.   .+.+||..+
T Consensus       114 ~~~~~~~d~~~~-------------------------~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~---~~~~~d~~~  163 (337)
T d1pbyb_         114 PTRVALYDAETL-------------------------SRRKAFEAP--RQITMLAWARDGSKLYGLGR---DLHVMDPEA  163 (337)
T ss_dssp             CCEEEEEETTTT-------------------------EEEEEEECC--SSCCCEEECTTSSCEEEESS---SEEEEETTT
T ss_pred             ccceeeccccCC-------------------------eEEEecccc--CCceEEEEcCCCCEEEEEcC---Ccceeeeec
Confidence            356677777632                         223333333  56888999999999998763   577899988


Q ss_pred             CCceeeecCCCCeEEEEEecCC------------------------CeEEEEecCCcEEEEECCCCcee--ccccCCCce
Q 013347          244 GLGTPIRRGFGGLSILKWSPTG------------------------DYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFV  297 (444)
Q Consensus       244 ~~~~~~~~~~~~v~~~~~sp~~------------------------~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~v  297 (444)
                      ++...............++|++                        ..+..+..++.+.+||..+++..  ....+...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T d1pbyb_         164 GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY  243 (337)
T ss_dssp             TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcce
Confidence            7655433322111111122221                        11112233456899999988763  345677788


Q ss_pred             eEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccc
Q 013347          298 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG  377 (444)
Q Consensus       298 ~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~  377 (444)
                      ..+.++|++.+++.+.   +.+..|++.             +...+..+.....+.+++|+|||++|++++.+      +
T Consensus       244 ~~~~~~~~~~~~~~~~---~~i~v~d~~-------------~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~------~  301 (337)
T d1pbyb_         244 FSTAVNPAKTRAFGAY---NVLESFDLE-------------KNASIKRVPLPHSYYSVNVSTDGSTVWLGGAL------G  301 (337)
T ss_dssp             EEEEECTTSSEEEEEE---SEEEEEETT-------------TTEEEEEEECSSCCCEEEECTTSCEEEEESBS------S
T ss_pred             EEEEecccceEEEEcc---ccEEEEECC-------------CCcEEEEEcCCCCEEEEEECCCCCEEEEEeCC------C
Confidence            9999999999987552   345555542             33444444444478899999999999999888      8


Q ss_pred             eEEEEEcCCCCeE
Q 013347          378 LIAIYDARRTPLI  390 (444)
Q Consensus       378 ~i~vwd~~~~~~~  390 (444)
                      +|+|||.++.+.+
T Consensus       302 ~i~v~D~~t~~~v  314 (337)
T d1pbyb_         302 DLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             cEEEEECCCCcEE
Confidence            9999999998776

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=1.3e-18  Score=162.21  Aligned_cols=189  Identities=10%  Similarity=0.073  Sum_probs=140.1

Q ss_pred             EEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEE
Q 013347          159 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTI  238 (444)
Q Consensus       159 l~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~i  238 (444)
                      ++.+.+|+|.|||..+.+                         ++..+..+  ..+..++|||||+++++++.|+ .|.+
T Consensus        36 v~~~d~g~v~v~D~~t~~-------------------------v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg-~v~~   87 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYE-------------------------IKTVLDTG--YAVHISRLSASGRYLFVIGRDG-KVNM   87 (432)
T ss_dssp             EEETTTTEEEEEETTTCC-------------------------EEEEEECS--SCEEEEEECTTSCEEEEEETTS-EEEE
T ss_pred             EEEcCCCEEEEEECCCCc-------------------------EEEEEeCC--CCeeEEEECCCCCEEEEEcCCC-CEEE
Confidence            455567999999998544                         34445544  3699999999999999999998 9999


Q ss_pred             EEcCCCCceeee------cCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceec-cc-----------cCCCceeE
Q 013347          239 WDVAQGLGTPIR------RGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEP-WS-----------STSGFVTG  299 (444)
Q Consensus       239 wd~~~~~~~~~~------~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~-~~-----------~~~~~v~~  299 (444)
                      ||+.+++.....      .+.+.+.+++|+|||++| +++..++.|++||..+++... +.           .+......
T Consensus        88 ~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (432)
T d1qksa2          88 IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  167 (432)
T ss_dssp             EETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             EEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeE
Confidence            999887643321      223445556677899987 678889999999999988632 11           34556678


Q ss_pred             EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      +.++|+|..++++...++.+..++..+.           ....+..+.....+..++|+|||+++++++.++     +.+
T Consensus       168 v~~s~dg~~~~vs~~~~~~i~~~d~~~~-----------~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~-----~~v  231 (432)
T d1qksa2         168 ILASHYRPEFIVNVKETGKILLVDYTDL-----------NNLKTTEISAERFLHDGGLDGSHRYFITAANAR-----NKL  231 (432)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCS-----------SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG-----TEE
T ss_pred             EEECCCCCEEEEEEccCCeEEEEEccCC-----------CcceEEEEcccCccccceECCCCCEEEEecccc-----ceE
Confidence            8999999998888888888888875321           111223333333678999999999999988774     789


Q ss_pred             EEEEcCCCCeEE
Q 013347          380 AIYDARRTPLIS  391 (444)
Q Consensus       380 ~vwd~~~~~~~~  391 (444)
                      .++|..+++...
T Consensus       232 ~v~d~~~~~~~~  243 (432)
T d1qksa2         232 VVIDTKEGKLVA  243 (432)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEeecccceEEE
Confidence            999999877653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=9.8e-16  Score=139.73  Aligned_cols=283  Identities=11%  Similarity=-0.040  Sum_probs=175.8

Q ss_pred             cceEEEEEecCCCeEEEEE-----CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------C
Q 013347          100 VDLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------K  164 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------d  164 (444)
                      .++.+++++|||+.+++..     ..+.|.+||..+ ++....+. .+.  ...++|+|||++++++..          +
T Consensus        21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~t-g~~~~~~~-~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGS-GSILGHVN-GGF--LPNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCccccccCCCCCEEEEEcccccCCCceEEEEECCC-CCEEEEEe-CCC--CccEEEcCCCCEEEEEeecCCcccccccc
Confidence            3588899999999987642     346788999887 55555443 333  337999999988887753          4


Q ss_pred             CcEEEEecCCCCCcceeeccccc------cccccccCCCCceEEEEE----------------eeccCCCceEEEEEccC
Q 013347          165 GGICIWAPSYPGNAASVRSGAAS------FLGALSRGPGTRWTLVDF----------------LRSQNGEQITALSWGPD  222 (444)
Q Consensus       165 g~v~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~~sp~  222 (444)
                      +.|.+||..+.+....+......      ....+.+..+++...+..                ...+. ....++.++|+
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~  175 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL-SSPTCYHIHPG  175 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe-ccceeEEEecC
Confidence            77999999876654443222111      111222333333221111                11121 35678889999


Q ss_pred             CCeE-EEEeeCCCeEEEEEcCCCCceeeecC-------CCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cc
Q 013347          223 GRYL-ASASYESSSFTIWDVAQGLGTPIRRG-------FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WS  291 (444)
Q Consensus       223 ~~~l-~~~~~d~~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~  291 (444)
                      |+.+ ++.+.|+ .+.+|+...++.......       ......+.+++++.+ +..+.++.+.+|+..+.....   ..
T Consensus       176 g~~~~v~~~~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~  253 (373)
T d2madh_         176 APSTFYLLCAQG-GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPID  253 (373)
T ss_pred             CCcEEEEEcCCC-eEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeec
Confidence            9876 4566776 999999988765543221       122344556666544 455678899999988765421   11


Q ss_pred             cC----------CCceeEEEECCCCCEEEEEEcCC---------ceEEEEEeecCCCCcCCCcCCCCcccccccccCCce
Q 013347          292 ST----------SGFVTGATWDPEGRMILLAFAGS---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  352 (444)
Q Consensus       292 ~~----------~~~v~~~~~sp~g~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  352 (444)
                      .+          ......++++|++..++......         ..+..|+..             +.+.+..+.....+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-------------t~~~~~~~~~~~~~  320 (373)
T d2madh_         254 ALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL-------------VGQTSSQISLGHDV  320 (373)
T ss_pred             cccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC-------------CCcEEEEecCCCCe
Confidence            11          22345567777777766543322         222222221             34445555544478


Q ss_pred             eEEEECCCCCEE--EEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          353 EKIAWDASGERL--AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       353 ~~~~~spdg~~l--~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      ..++|+|||+.+  ++++.+      ++|+|||+.+++.+     ..+.+++..++.+++.++
T Consensus       321 ~~~a~spDG~~~l~vt~~~d------~~v~v~D~~tg~~~-----~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGT------EVLHIYDAGAGDQD-----QSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCC------CeEEEEECCCCCEE-----EEECCCCCCCcEEEEecC
Confidence            999999999853  455555      99999999998876     677777777888877654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=1.1e-17  Score=150.78  Aligned_cols=240  Identities=12%  Similarity=0.057  Sum_probs=158.9

Q ss_pred             ceEEEEEecCCCeEEE-EECCCeEEEEEccCCCCceeEEecC-----CCCCeEEEEEeeCCCeEEEEec-----------
Q 013347          101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC-----------  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~-~~~dg~v~iw~~~~~~~~~~~~~~~-----~~~~v~~l~~s~~~~~ll~~~~-----------  163 (444)
                      .+.+++|+|||+++++ +..++.|.+||+.+ ++........     +...+..++|+|||+.++++..           
T Consensus        41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~  119 (346)
T d1jmxb_          41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV  119 (346)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CcceEEECCCCCEEEEEECCCCcEEEEeCcc-CeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence            4679999999998755 45789999999987 4444333221     1124567999999888877653           


Q ss_pred             -CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcC
Q 013347          164 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA  242 (444)
Q Consensus       164 -dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~  242 (444)
                       ++.+.+|+.........+..                      ...  ...+..+.++++++.++++   + .+.+|++.
T Consensus       120 ~~~~i~~~~~~~~~~~~~~~~----------------------~~~--~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  171 (346)
T d1jmxb_         120 KPPRLEVFSTADGLEAKPVRT----------------------FPM--PRQVYLMRAADDGSLYVAG---P-DIYKMDVK  171 (346)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEE----------------------EEC--CSSCCCEEECTTSCEEEES---S-SEEEECTT
T ss_pred             CcceEEEEecccceeeeEEEe----------------------eec--cCceEEEEecCCCEEEEeC---C-cceEEEcc
Confidence             45677777663322221111                      011  1345667777777766542   3 68999998


Q ss_pred             CCCceeeecCCCCeEEEEEecCCCeE--------------------------EEEecCCcEEEEECCCCcee--ccccCC
Q 013347          243 QGLGTPIRRGFGGLSILKWSPTGDYF--------------------------FAAKFDGTFYLWETNTWTSE--PWSSTS  294 (444)
Q Consensus       243 ~~~~~~~~~~~~~v~~~~~sp~~~~l--------------------------~~~~~d~~v~iwd~~~~~~~--~~~~~~  294 (444)
                      +++.............+.++|++..+                          +++..+..+.+||..++...  ....+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (346)
T d1jmxb_         172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT  251 (346)
T ss_dssp             TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeeccc
Confidence            87766554444444444455544332                          23334556888998887763  345677


Q ss_pred             CceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCcc
Q 013347          295 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI  374 (444)
Q Consensus       295 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~  374 (444)
                      ..+..+.+++++.+++....  ..+..|+..             +.+.+..+.....+.+++|+|||++|++++.+    
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~--~~v~v~d~~-------------~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d----  312 (346)
T d1jmxb_         252 ELYFTGLRSPKDPNQIYGVL--NRLAKYDLK-------------QRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF----  312 (346)
T ss_dssp             SCEEEEEECSSCTTEEEEEE--SEEEEEETT-------------TTEEEEEEECSSCCCEEEECSSSSCEEEESBS----
T ss_pred             ceeEEEEEeCCCCEEEEecC--CeEEEEECC-------------CCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCC----
Confidence            88899999999988876644  234444431             23444444433478999999999999999888    


Q ss_pred             ccceEEEEEcCCCCeE
Q 013347          375 YKGLIAIYDARRTPLI  390 (444)
Q Consensus       375 ~d~~i~vwd~~~~~~~  390 (444)
                        +.|++||+++++.+
T Consensus       313 --~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         313 --NDLAVFNPDTLEKV  326 (346)
T ss_dssp             --SEEEEEETTTTEEE
T ss_pred             --CcEEEEECccCCEE
Confidence              99999999998776

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=8.4e-17  Score=145.80  Aligned_cols=268  Identities=11%  Similarity=-0.027  Sum_probs=169.6

Q ss_pred             eEEEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEec------CCCCCeEEEEEeeCCCeEEEEec--
Q 013347          102 LQGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNGGRSLSVGC--  163 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~------~~~~~v~~l~~s~~~~~ll~~~~--  163 (444)
                      ...++|||||++|++++          .++.|++||..+ ++....+..      ........++|+|+++.++++..  
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC-CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            44789999999988754          478999999998 444333321      11233456899999888877654  


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCC
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ  243 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~  243 (444)
                      +..+.+|+....+....+....                .....   .......+.++++++.++....+.+.+.+++...
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPD----------------CYHIF---PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCS----------------EEEEE---EEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             CceeeeeecCCCcEeeEEecCC----------------cceEe---ecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            4788999998544333322210                00000   0123456778888888777655554677776654


Q ss_pred             CCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---cC----------CCceeEEEECCCCCEEE
Q 013347          244 GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---ST----------SGFVTGATWDPEGRMIL  310 (444)
Q Consensus       244 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~----------~~~v~~~~~sp~g~~l~  310 (444)
                      ....    +...+....+.+++..++.++.++.+++|++..++...+.   .+          ......+++++++..++
T Consensus       189 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~  264 (355)
T d2bbkh_         189 FHPE----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  264 (355)
T ss_dssp             CSCT----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             ccce----ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEE
Confidence            4321    2233445677888888999999999999999887653211   11          12235588999999887


Q ss_pred             EEEcCCc------eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCE-E-EEEecCCCccccceEEEE
Q 013347          311 LAFAGSL------TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-L-AVSYKGGDDIYKGLIAIY  382 (444)
Q Consensus       311 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l-~~~~~d~~~~~d~~i~vw  382 (444)
                      .......      ....+.+|+..          +.+.+..+..+..+.+++|+|||+. | ++++.+      ++|+||
T Consensus       265 ~~~~~~~~~~~~~~~~~v~v~d~~----------t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d------~~i~v~  328 (355)
T d2bbkh_         265 LLVDQRDEWRHKTASRFVVVLDAK----------TGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD------KTLYIH  328 (355)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETT----------TCCEEEEEEEEEEECEEEECCSSSCEEEEEETTT------TEEEEE
T ss_pred             EEeccCCceeecCCCCeEEEEeCC----------CCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCC------CEEEEE
Confidence            6543221      11223333321          2344445554447889999999973 3 444444      999999


Q ss_pred             EcCCCCeEEEEEeeeeeCCCCCCcceeeeeCC
Q 013347          383 DARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  414 (444)
Q Consensus       383 d~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg  414 (444)
                      |+++++.+     ..+.+++.....+.+.++|
T Consensus       329 D~~tg~~~-----~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         329 DAESGEEL-----RSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             ETTTCCEE-----EEECCCCSSCCEEECCCCC
T ss_pred             ECCCCCEE-----EEEeCcCCCccEEEeCCCC
Confidence            99998876     5677777777777766554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=2.8e-15  Score=135.58  Aligned_cols=292  Identities=13%  Similarity=0.076  Sum_probs=175.1

Q ss_pred             EEEecCCCeEEEEE-----CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEe----------cCCcEEE
Q 013347          105 VSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGICI  169 (444)
Q Consensus       105 ~~~sp~g~~la~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~----------~dg~v~i  169 (444)
                      .+.+|||+++++..     .++.|.+||..+ ++....+. .+  ....++|||||+.+++++          .++.|++
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~t-g~~~~~~~-~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v   82 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMID-GG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEV   82 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEE-EC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCC-CcEEEEEE-CC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence            35689999987753     456799999987 55544443 23  334799999998887654          2688999


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-CCeEEEEEcCCCCcee
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-SSSFTIWDVAQGLGTP  248 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~~i~iwd~~~~~~~~  248 (444)
                      ||..+.+....+.....                   -..........++|+|++++++.++.. +..+.+|+..+++...
T Consensus        83 ~D~~t~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          83 FDPVTLLPTADIELPDA-------------------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             ECTTTCCEEEEEEETTC-------------------CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEecCCc-------------------ceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence            99986544333322100                   000001234568999999998877532 2389999999887655


Q ss_pred             eecCC--------CCeEEEEEecCCCeEEEE-ecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceE
Q 013347          249 IRRGF--------GGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  319 (444)
Q Consensus       249 ~~~~~--------~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~  319 (444)
                      .....        .....+.+++|++.++.. ..++.+.+++..+...    .+...+....+.+++..++.+ ..++.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~  218 (355)
T d2bbkh_         144 MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----EDEFLINHPAYSQKAGRLVWP-TYTGKI  218 (355)
T ss_dssp             EEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----TTSCBCSCCEEETTTTEEEEE-BTTSEE
T ss_pred             EEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----eecceeeeccccCCCCeEEEe-cCCCeE
Confidence            33322        223345667777666443 3344556665544332    223344556777777777755 455777


Q ss_pred             EEEEeecCCCCcCCCcCCCCcccccccc---cCCceeEEEECCCCCEEEEEecCCCc----cccceEEEEEcCCCCeEEE
Q 013347          320 GSIHFASKPPSLDAHLLPVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISL  392 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~d~~~----~~d~~i~vwd~~~~~~~~~  392 (444)
                      +.+.+........   ............   .......++++|++..++..+.+...    ...+.|.+||..+++.+..
T Consensus       219 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~  295 (355)
T d2bbkh_         219 HQIDLSSGDAKFL---PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  295 (355)
T ss_dssp             EEEECTTSSCEEC---CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             EEEecCCCcEEEE---eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEE
Confidence            7777643211000   000000000010   01134568899999998887655321    1226899999999887632


Q ss_pred             EEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeee
Q 013347          393 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  436 (444)
Q Consensus       393 ~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~  436 (444)
                           +. +...+.+++|||||+..   +++.+..+|.|.+|++
T Consensus       296 -----~~-~~~~~~~~a~spDG~~~---l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         296 -----FE-MGHEIDSINVSQDEKPL---LYALSTGDKTLYIHDA  330 (355)
T ss_dssp             -----EE-EEEEECEEEECCSSSCE---EEEEETTTTEEEEEET
T ss_pred             -----ec-CCCCEEEEEEcCCCCeE---EEEEECCCCEEEEEEC
Confidence                 22 13346799999999851   2344566899999876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.69  E-value=1.8e-17  Score=150.65  Aligned_cols=275  Identities=9%  Similarity=-0.003  Sum_probs=178.3

Q ss_pred             eEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeE-EEEecCCcEEE----------
Q 013347          102 LQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICI----------  169 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-l~~~~dg~v~i----------  169 (444)
                      ......+|||++|++.. .+++|.++|+.+ .+...++...+...+..++|+|+++.. +++..+..+.+          
T Consensus        74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl~t-~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          74 ISMTDGRYDGKYLFINDKANTRVARIRLDI-MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTT-TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             cceecccCCCCEEEEEcCCCCEEEEEECCC-CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            45566789999997665 788999999998 555555555677889999999998764 33334444432          


Q ss_pred             --------EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc
Q 013347          170 --------WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV  241 (444)
Q Consensus       170 --------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~  241 (444)
                              +|..+..                         ....+..  ...+..+.++|+|+++++++.+...+..++.
T Consensus       153 ~~~~~~~~iD~~t~~-------------------------v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~  205 (441)
T d1qnia2         153 NSYTMFTAIDAETMD-------------------------VAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAG  205 (441)
T ss_dssp             GEEEEEEEEETTTCS-------------------------EEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred             cccceEEeecCccce-------------------------eeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEec
Confidence                    2222111                         1111121  1467889999999999988876535555555


Q ss_pred             CCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          242 AQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       242 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      .+...............++++|+|+++..+ .++.+.+++....+......-......+.++|||+++++++..+.++.+
T Consensus       206 ~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv  284 (441)
T d1qnia2         206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSV  284 (441)
T ss_dssp             HTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEE
T ss_pred             cCcceEEEEEeCCccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEE
Confidence            444433222111122334567899987654 4677777777665554333334456889999999999999888899999


Q ss_pred             EEeecCCCCcCCCcCCCCcccccccccCC----ceeEEEECCCCCEEEEEecCCCccccceEEEEEcC----------CC
Q 013347          322 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ----GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR----------RT  387 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~----------~~  387 (444)
                      |++......++..+     .....+.++.    .....+|+++|..+.+...|      ..|..|++.          ..
T Consensus       285 ~d~~k~~~~~~~~~-----~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d------s~v~kw~~~~~~~~~~~~~~~  353 (441)
T d1qnia2         285 IAIDKLDDLFEDKI-----ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID------SQVCKWNIADAIKHYNGDRVN  353 (441)
T ss_dssp             EEGGGHHHHTTTSS-----CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT------TEEEEEEHHHHHHHHTTCCCC
T ss_pred             EEeehhhhHhhccC-----CcceEEEeecccccCcccceecCCceEEEccccc------ceEEEeccchhhhhhccCCCc
Confidence            99765322222221     1111222221    45667899999888777777      899999974          22


Q ss_pred             CeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          388 PLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       388 ~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      .+.....++...||...+.+.+|+|||+|
T Consensus       354 ~v~~~~~v~y~~GH~~~~~~~t~~pdGk~  382 (441)
T d1qnia2         354 YIRQKLDVQYQPGHNHASLTESRDADGKW  382 (441)
T ss_dssp             CEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred             eeEeccccccCCCCCccccccccCCCCcE
Confidence            34433344444689989999999999998

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.63  E-value=5.6e-14  Score=127.83  Aligned_cols=257  Identities=10%  Similarity=-0.033  Sum_probs=146.4

Q ss_pred             cCCCCCeEEEEEeeCCCeEEEEec-----CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCce
Q 013347          140 SDSQRDVKVLEWRPNGGRSLSVGC-----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  214 (444)
Q Consensus       140 ~~~~~~v~~l~~s~~~~~ll~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  214 (444)
                      ..+..++.+++++|||++++++..     .+.|.+||..+.+....                         +..+.   .
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------------~~~~~---~   68 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------------VNGGF---L   68 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------------EeCCC---C
Confidence            367788999999999998877532     36788888875443332                         33222   2


Q ss_pred             EEEEEccCCCeEEEEee----------CCCeEEEEEcCCCCceeee----------------------------------
Q 013347          215 TALSWGPDGRYLASASY----------ESSSFTIWDVAQGLGTPIR----------------------------------  250 (444)
Q Consensus       215 ~~~~~sp~~~~l~~~~~----------d~~~i~iwd~~~~~~~~~~----------------------------------  250 (444)
                      ..++|+|||++|++++.          ++ .|.+||..+++.....                                  
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~-~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  147 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTD-YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccce-EEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence            35777777777777643          33 6777777765432110                                  


Q ss_pred             --------------cCCCCeEEEEEecCCCeE-EEEecCCcEEEEECCCCceeccc-------cCCCceeEEEECCCCCE
Q 013347          251 --------------RGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRM  308 (444)
Q Consensus       251 --------------~~~~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~~~sp~g~~  308 (444)
                                    .+.....++.++|+++.+ ++.+.|+.+.+||..+++.....       ........+.+++++.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         148 PAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             CceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence                          111223456677777654 56777888888888776653211       12222345566666665


Q ss_pred             EEEEEcCCceEEEEEeecCCCCcCCCcCCCCccccccccc-CCceeEEEECCCCCEEEEEecCCCc----cccceEEEEE
Q 013347          309 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG-SQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYD  383 (444)
Q Consensus       309 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~d~~~----~~d~~i~vwd  383 (444)
                      ++.+  .++.+..+............ ............. ......++++|++..++....++..    ..++.+.+||
T Consensus       228 ~~~~--~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         228 VWPV--YSGKILQADISAAGATNKAP-IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             EEec--CCceEEEEEcCCCeEEEEEe-eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence            5543  33445555433211000000 0000000000000 0134556777887776654433211    1237899999


Q ss_pred             cCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          384 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      ..+++.+.     .+ .+...+..++|||||+..   +++.+..+|.|++|++.
T Consensus       305 ~~t~~~~~-----~~-~~~~~~~~~a~spDG~~~---l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         305 GLVGQTSS-----QI-SLGHDVDAISVAQDGGPD---LYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCCcEEE-----Ee-cCCCCeeEEEECCCCCEE---EEEEeCCCCeEEEEECC
Confidence            99987762     22 345678899999999851   23456778999999875

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=1.7e-13  Score=128.89  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=101.6

Q ss_pred             EEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe----cCCCCCeEEEEEeeCCCeEEEEec---------CCcEEEE
Q 013347          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT----SDSQRDVKVLEWRPNGGRSLSVGC---------KGGICIW  170 (444)
Q Consensus       104 ~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~----~~~~~~v~~l~~s~~~~~ll~~~~---------dg~v~iw  170 (444)
                      .+.|.++++++.  ..++.+.+||+.+ ++...++.    ..|...|.++.|||||++++.++.         ++.+.||
T Consensus        21 ~~~W~~d~~~~~--~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLY--KQENNILVFNAEY-GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEE--ESSSCEEEEETTT-CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCEEEE--EcCCcEEEEECCC-CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            468999998776  4688899999998 44443332    235578999999999988887753         3678899


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  250 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~  250 (444)
                      |+..+. .                         ..+..+. ..+..+.|||||+.+|... ++ .+.+|+..+++...+.
T Consensus        98 d~~~~~-~-------------------------~~l~~~~-~~~~~~~~SPDG~~ia~~~-~~-~l~~~~~~~g~~~~~t  148 (470)
T d2bgra1          98 DLNKRQ-L-------------------------ITEERIP-NNTQWVTWSPVGHKLAYVW-NN-DIYVKIEPNLPSYRIT  148 (470)
T ss_dssp             ETTTTE-E-------------------------CCSSCCC-TTEEEEEECSSTTCEEEEE-TT-EEEEESSTTSCCEECC
T ss_pred             ECCCCc-c-------------------------cccccCC-ccccccccccCcceeeEee-cc-cceEEECCCCceeeee
Confidence            998432 1                         1233443 6899999999999999864 55 8999999988765543


Q ss_pred             cC-------------------CCCeEEEEEecCCCeEEEEecC
Q 013347          251 RG-------------------FGGLSILKWSPTGDYFFAAKFD  274 (444)
Q Consensus       251 ~~-------------------~~~v~~~~~sp~~~~l~~~~~d  274 (444)
                      ..                   .+....+.|||||++|+....|
T Consensus       149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            21                   1234568899999999877644

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.2e-12  Score=110.39  Aligned_cols=240  Identities=16%  Similarity=0.180  Sum_probs=151.8

Q ss_pred             eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-C--cEEEEecCCCCCcceeeccccccccccccCCCC
Q 013347          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (444)
Q Consensus       122 ~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (444)
                      .|.|.|.+  +.....++ .+...+.+.+|||||++|+..... +  .+.+.+......                     
T Consensus        20 ~l~i~d~d--G~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~---------------------   75 (269)
T d2hqsa1          20 ELRVSDYD--GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---------------------   75 (269)
T ss_dssp             EEEEEETT--SCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---------------------
T ss_pred             EEEEEcCC--CCCcEEEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce---------------------
Confidence            46666665  44444443 446778999999999999877664 3  344444442111                     


Q ss_pred             ceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEc--CCCCceeeecCCCCeEEEEEecCCCeEEEE-ecCC
Q 013347          199 RWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDV--AQGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDG  275 (444)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~  275 (444)
                           ..+..+ ........|+|+|+.++......+...++..  ...................++++++.++.. ..++
T Consensus        76 -----~~~~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  149 (269)
T d2hqsa1          76 -----RQVASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG  149 (269)
T ss_dssp             -----EEEECC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             -----eEEeee-ecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccC
Confidence                 112222 3677889999999999887654434333333  333333344445566667788888776444 3444


Q ss_pred             --cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCcee
Q 013347          276 --TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  353 (444)
Q Consensus       276 --~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  353 (444)
                        .|.+.++.++....+...........|+|+++.++......+....+....            .......+.......
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~  217 (269)
T d2hqsa1         150 RPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL------------ATGGVQVLSSTFLDE  217 (269)
T ss_dssp             SCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET------------TTCCEEECCCSSSCE
T ss_pred             CceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeec------------ccccceEeecCcccc
Confidence              566777777766666667777888999999999998766655544444322            112222222222567


Q ss_pred             EEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeee
Q 013347          354 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  412 (444)
Q Consensus       354 ~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  412 (444)
                      ...|||||++|+..+..+..   ..|+++++..+...      .+......+...+|||
T Consensus       218 ~p~~SPDG~~i~f~s~~~~~---~~l~~~~~dg~~~~------~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         218 TPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKA------RLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEEECTTSSEEEEEEEETTE---EEEEEEETTSCCEE------ECCCSSSEEEEEEECC
T ss_pred             ceEECCCCCEEEEEEcCCCC---cEEEEEECCCCCEE------EEeCCCCcEEeEEeCC
Confidence            78999999999877654322   68999999876643      2333445566778988

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=4.2e-13  Score=126.18  Aligned_cols=74  Identities=8%  Similarity=0.078  Sum_probs=57.9

Q ss_pred             ceEEEEEecCCCeEEEEEC---------CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEe
Q 013347          101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~  171 (444)
                      .|.+++|||||++|++++.         ++.+.|||+.+ ++. ..+ ..+...+..+.|||||+.++. ..++.+.+|+
T Consensus        63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~-~~~-~~l-~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~  138 (470)
T d2bgra1          63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-RQL-ITE-ERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKI  138 (470)
T ss_dssp             CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-TEE-CCS-SCCCTTEEEEEECSSTTCEEE-EETTEEEEES
T ss_pred             ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC-Ccc-ccc-ccCCccccccccccCcceeeE-eecccceEEE
Confidence            5899999999999998753         56788999997 332 223 478889999999999777666 5678899999


Q ss_pred             cCCCCCc
Q 013347          172 PSYPGNA  178 (444)
Q Consensus       172 ~~~~~~~  178 (444)
                      ...+...
T Consensus       139 ~~~g~~~  145 (470)
T d2bgra1         139 EPNLPSY  145 (470)
T ss_dssp             STTSCCE
T ss_pred             CCCCcee
Confidence            8855443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.53  E-value=5.2e-12  Score=114.08  Aligned_cols=264  Identities=10%  Similarity=0.017  Sum_probs=155.1

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec---CCcEEEEecCCCCCc
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNA  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~---dg~v~iw~~~~~~~~  178 (444)
                      +.-++|+|+++.|.++. .+.+..|.+...+................+.++++++.+++...   .+.|..+.+......
T Consensus        42 ~s~la~s~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~  120 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             CSEEEECTTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             CCEEEEcCCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc
Confidence            56799999999998765 46788888876443333322233445667888999765444332   366666655422221


Q ss_pred             ceeeccccccccccccCCCCc-eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee----e--c
Q 013347          179 ASVRSGAASFLGALSRGPGTR-WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI----R--R  251 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~----~--~  251 (444)
                      ..+...          ..... ..............+.++.|+|||++++++......|.+|+.........    .  .
T Consensus       121 ~~~~~~----------~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T d1jofa_         121 GNVFSV----------SETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             EEEEEE----------CTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             ceeEee----------eecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC
Confidence            111100          00000 01111111112246899999999999988875444899998765433221    1  1


Q ss_pred             CCCCeEEEEEecCCCeEEE-EecCCcEEEEECCCCceecc--------c------------cCCCceeEEEECCCCCEEE
Q 013347          252 GFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTSEPW--------S------------STSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~-~~~d~~v~iwd~~~~~~~~~--------~------------~~~~~v~~~~~sp~g~~l~  310 (444)
                      .....+.++|+|+++++.+ ...+++|.+|++..++....        .            ........+.++|+|++|+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            2467899999999998854 44578999999876543110        0            1122356789999999998


Q ss_pred             EEEcCCc-----eEEEEEeecCCCCcCCCcCCCCccc-ccccccCCceeEEEECC-CCCEEEEEecCCCccccceEEEEE
Q 013347          311 LAFAGSL-----TLGSIHFASKPPSLDAHLLPVDLPD-IVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYD  383 (444)
Q Consensus       311 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp-dg~~l~~~~~d~~~~~d~~i~vwd  383 (444)
                      ++...+.     .+..+++....     .+.  .... ............++++| +|++|+++..++     +.|.+|+
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g-----~~~--~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s-----~~v~v~~  338 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCG-----SIE--KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE-----GWLEIYR  338 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTS-----CEE--EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS-----CEEEEEE
T ss_pred             EEcccCCCccceEEEEEEecCCC-----cee--eEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCC-----CeEEEEE
Confidence            8753222     24444432210     000  0000 11111122467899998 899999887664     8999999


Q ss_pred             cCCCC
Q 013347          384 ARRTP  388 (444)
Q Consensus       384 ~~~~~  388 (444)
                      +....
T Consensus       339 ~~~~~  343 (365)
T d1jofa_         339 WKDEF  343 (365)
T ss_dssp             EETTE
T ss_pred             EeCCc
Confidence            87543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.53  E-value=9e-11  Score=105.82  Aligned_cols=295  Identities=11%  Similarity=0.076  Sum_probs=163.2

Q ss_pred             EEEEEC--CCeEEEEEccCCCCcee---EEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeecccccc
Q 013347          114 VAFISG--STQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (444)
Q Consensus       114 la~~~~--dg~v~iw~~~~~~~~~~---~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  188 (444)
                      |.+|+.  .+.|.++.++.......   .........+.-|+|+|+++.++++ ..+.+..|.+............    
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-~~~~~~~~~i~~~~~~~~~~~~----   79 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-AMKKWSSFAVKSPTEIVHEASH----   79 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-EBTEEEEEEEEETTEEEEEEEE----
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-eCCcEEEEEEeCCCCeEEEeee----
Confidence            556653  55777777765422221   1122345567789999997666655 4567888887633222111100    


Q ss_pred             ccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE--EEEeeCCCeEEEEEcCC------------CCce----e--
Q 013347          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL--ASASYESSSFTIWDVAQ------------GLGT----P--  248 (444)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l--~~~~~d~~~i~iwd~~~------------~~~~----~--  248 (444)
                                        .  .......+.++++++.+  +++...++.|..+.+..            ....    .  
T Consensus        80 ------------------~--~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (365)
T d1jofa_          80 ------------------P--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY  139 (365)
T ss_dssp             ------------------E--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred             ------------------c--CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCc
Confidence                              0  01233445555655532  22222222333332211            1000    0  


Q ss_pred             eecCCCCeEEEEEecCCCeEEEEec-CCcEEEEECCCC-cee-----ccccCCCceeEEEECCCCCEEEEEEcCCceEEE
Q 013347          249 IRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTW-TSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  321 (444)
Q Consensus       249 ~~~~~~~v~~~~~sp~~~~l~~~~~-d~~v~iwd~~~~-~~~-----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~  321 (444)
                      .......+.++.|+|||+++++++. ...|.+|+.... +..     .........+.++|+|+++++++....+..+..
T Consensus       140 ~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v  219 (365)
T d1jofa_         140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE  219 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEE
Confidence            1112345789999999999877754 457888876543 221     122345678999999999999999888888888


Q ss_pred             EEeecCCCCcCCC-----cCCCCc--ccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCC-eEEEE
Q 013347          322 IHFASKPPSLDAH-----LLPVDL--PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP-LISLS  393 (444)
Q Consensus       322 ~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~-~~~~~  393 (444)
                      +++..........     +.....  ..............+.++|||++|+++....+......|..|++.... +....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~  299 (365)
T d1jofa_         220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL  299 (365)
T ss_dssp             EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred             EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence            8874321100000     000000  000011111146688999999999988654322222458888876533 22222


Q ss_pred             EeeeeeCCCCCCcceeeee-CCCCCCCceEEEEeccceeeeeeee
Q 013347          394 LIGFIRGPGDNPKPVAFSF-HDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       394 ~~~~~~~~~~~i~~v~~sp-dg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      .+...........+++++| +|++    ++..+..++.|.+|.+.
T Consensus       300 ~~~~~~~~G~~p~~i~~~p~~G~~----l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         300 FLSPTPTSGGHSNAVSPCPWSDEW----MAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEECSSCCTTCCCEEECTTCTTE----EEEECSSSCEEEEEEEE
T ss_pred             EeeEEEcCCCCccEEEecCCCCCE----EEEEeCCCCeEEEEEEe
Confidence            2222233456678899998 7887    34455788999998764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.2e-13  Score=125.64  Aligned_cols=295  Identities=7%  Similarity=-0.061  Sum_probs=167.1

Q ss_pred             EEEEEecCCCeEEE---EECCCe--EEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec----------CCcE
Q 013347          103 QGVSWHQHKHIVAF---ISGSTQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGI  167 (444)
Q Consensus       103 ~~~~~sp~g~~la~---~~~dg~--v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~----------dg~v  167 (444)
                      ..++..++++....   ...++.  +.+||..+ ++...... .+...  .++|+|||+.++++..          ++.|
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~-~~~~~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v   98 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGC-GVTLGHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYV   98 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCC-CcEEEEEe-CCCCC--cceECCCCCEEEEEcccCccccccccCCeE
Confidence            34456777775432   234444  55557665 44444443 33333  5899999888877652          5679


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCce
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGT  247 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~  247 (444)
                      ++||..+.+....+....                   ............++|+|||++|+++..+.+.+.+||+.+++..
T Consensus        99 ~v~D~~t~~~~~~i~~p~-------------------~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~  159 (368)
T d1mdah_          99 EVFDPVTFLPIADIELPD-------------------APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD  159 (368)
T ss_dssp             EEECTTTCCEEEEEEETT-------------------SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE
T ss_pred             EEEECCCCcEeeeecCCc-------------------cceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe
Confidence            999998554443332110                   0000001234568999999999988765459999999998776


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-------ccccCCCceeEEEECCCCCEEEEEEcCCceEE
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  320 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-------~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~  320 (444)
                      ..........  .+......+++.+.||++.++++......       ....+...+..+.+.+++..+... .  +.++
T Consensus       160 ~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--~~v~  234 (368)
T d1mdah_         160 QLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-A--SSIL  234 (368)
T ss_dssp             EEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-S--SCCE
T ss_pred             EEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-C--CCEE
Confidence            6444322211  11122345566677888888877654432       122444556677888888766533 2  3345


Q ss_pred             EEEeecCCCCcCCCcCCCCccccccccc---CCceeEEEECCCCCEEEEEecCCCc---cccceEEEEEcCCCCeEEEEE
Q 013347          321 SIHFASKPPSLDAHLLPVDLPDIVSLTG---SQGIEKIAWDASGERLAVSYKGGDD---IYKGLIAIYDARRTPLISLSL  394 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~l~~~~~d~~~---~~d~~i~vwd~~~~~~~~~~~  394 (444)
                      .+.+........   .............   ......++++|++..+++...+...   .....|.+||..+++.+.   
T Consensus       235 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~---  308 (368)
T d1mdah_         235 QGDIPAAGATMK---AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG---  308 (368)
T ss_dssp             EEECCSSCCEEE---CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE---
T ss_pred             EEeecCCceEEE---eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE---
Confidence            554432111000   0000110000000   0123468899999888776544221   112569999999988662   


Q ss_pred             eeeeeCCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          395 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       395 ~~~~~~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                        .+. +...+.+++|||||+..   +.+.+..++.|.+|+..
T Consensus       309 --~~~-~~~~~~~~a~spDG~~~---ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         309 --PIS-NGHDSDAIIAAQDGASD---NYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             --CCE-EEEEECEEEECCSSSCE---EEEEETTTTEEEEEESS
T ss_pred             --Eec-CCCceeEEEECCCCCEE---EEEEeCCCCeEEEEECC
Confidence              222 23457789999999741   23445567889998753

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=3.3e-12  Score=115.85  Aligned_cols=236  Identities=11%  Similarity=-0.076  Sum_probs=134.7

Q ss_pred             EEEEEecCCCeEEEEE----------CCCeEEEEEccCCCCceeEEecC------CCCCeEEEEEeeCCCeEEEEec-CC
Q 013347          103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGC-KG  165 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~----------~dg~v~iw~~~~~~~~~~~~~~~------~~~~v~~l~~s~~~~~ll~~~~-dg  165 (444)
                      ..++|+|||+.|++.+          .|+.|.+||..+ ++....+...      .......++|+|||++++++.. ++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCC-CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            4589999999999865          367899999987 4443333211      1122346899999998887764 59


Q ss_pred             cEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC
Q 013347          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL  245 (444)
Q Consensus       166 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~  245 (444)
                      .+.+||+...+....+                         ..+....+    +......++..+.|| .+.++++....
T Consensus       147 ~v~~~d~~~~~~~~~~-------------------------~~~~~~~~----~~~~~~~~v~~~~Dg-~~~~~~~~~~~  196 (368)
T d1mdah_         147 AAAGLSVPGASDDQLT-------------------------KSASCFHI----HPGAAATHYLGSCPA-SLAASDLAAAP  196 (368)
T ss_dssp             CEEEEEETTTEEEEEE-------------------------ECSSCCCC----EEEETTEEECCCCTT-SCEEEECCSSC
T ss_pred             eEEEEECCCCcEeEEe-------------------------eccCcceE----ccCCCceEEEEcCCC-CEEEEEecCCc
Confidence            9999999854332222                         22210111    011122333444454 55555554332


Q ss_pred             ceee-------ecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---c----------CCCceeEEEECCC
Q 013347          246 GTPI-------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S----------TSGFVTGATWDPE  305 (444)
Q Consensus       246 ~~~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~----------~~~~v~~~~~sp~  305 (444)
                      ....       ..+...+..+.+.+++..+.+.  .+.+++++...++...+.   .          .......++++|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~  274 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             eeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC
Confidence            2211       1122334456677776555433  455666666554432111   0          1122345788999


Q ss_pred             CCEEEEEEcCC--------ceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCC-EEE-EEecCCCccc
Q 013347          306 GRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLA-VSYKGGDDIY  375 (444)
Q Consensus       306 g~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~-~~~~d~~~~~  375 (444)
                      +..+++...+.        ..++.|+..             +.+.+.++.....+.+++|+|||+ +|+ ++..+     
T Consensus       275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~~-------------t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~-----  336 (368)
T d1mdah_         275 TDGIMILTVEHSRSCLAAAENTSSVTAS-------------VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGT-----  336 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESS-------------SCCEEECCEEEEEECEEEECCSSSCEEEEEETTT-----
T ss_pred             CCEEEEEecCCCceeecCCceEEEEECC-------------CCcEeEEecCCCceeEEEECCCCCEEEEEEeCCC-----
Confidence            88877654322        123334321             334444554444788999999997 344 44444     


Q ss_pred             cceEEEEEcCCCCeE
Q 013347          376 KGLIAIYDARRTPLI  390 (444)
Q Consensus       376 d~~i~vwd~~~~~~~  390 (444)
                       +.|++||..+++.+
T Consensus       337 -~~v~v~D~~tgk~~  350 (368)
T d1mdah_         337 -EVLDIYDAASDQDQ  350 (368)
T ss_dssp             -TEEEEEESSSCEEE
T ss_pred             -CeEEEEECCCCCEE
Confidence             89999999998876

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=4.9e-10  Score=96.26  Aligned_cols=216  Identities=14%  Similarity=0.192  Sum_probs=134.4

Q ss_pred             ceEEEEEecCCCeEEEEECCC---eEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCC
Q 013347          101 DLQGVSWHQHKHIVAFISGST---QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG  176 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~  176 (444)
                      .+...+|||||+.||......   .+.+.+...  ....... .+........|+|+|..++..... +...++......
T Consensus        40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~  116 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--GAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  116 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             ceeeeEECCCCCEEEEEEeeccCcceeeeeccc--CceeEEe-eeecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence            477899999999999876333   355555543  3333443 667788899999999888877653 333333322111


Q ss_pred             CcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC--eEEEEEcCCCCceeeecCCC
Q 013347          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS--SFTIWDVAQGLGTPIRRGFG  254 (444)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~--~i~iwd~~~~~~~~~~~~~~  254 (444)
                      ....                        ..... ........++++++.++..+..++  .|.+.++..+....+.....
T Consensus       117 ~~~~------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~  171 (269)
T d2hqsa1         117 GQIR------------------------QVTDG-RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGS  171 (269)
T ss_dssp             CCEE------------------------ECCCC-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSS
T ss_pred             ccce------------------------eeeec-cccccccccccccccceecccccCCceEeeeecccccceeeecccc
Confidence            1100                        01111 234456677888777666654332  56667777776666666667


Q ss_pred             CeEEEEEecCCCeEEEEecCC---cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCc--eEEEEEeecCCC
Q 013347          255 GLSILKWSPTGDYFFAAKFDG---TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPP  329 (444)
Q Consensus       255 ~v~~~~~sp~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~--~~~~~~~~~~~~  329 (444)
                      ......|+|+++.++..+.++   .+.+.|..++... ............|+|||+.|++.....+  .++.+.+     
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~-----  245 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST-----  245 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET-----
T ss_pred             cccccccccccceeEEEeecCCceeeeEeecccccce-EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC-----
Confidence            788899999999987665543   4555566655543 3344556678899999999987654332  2333332     


Q ss_pred             CcCCCcCCCCcccccccccCC-ceeEEEECC
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA  359 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp  359 (444)
                               .+.....+.... .+...+|||
T Consensus       246 ---------dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         246 ---------DGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             ---------TSCCEEECCCSSSEEEEEEECC
T ss_pred             ---------CCCCEEEEeCCCCcEEeEEeCC
Confidence                     333344455444 677889998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=1e-12  Score=119.13  Aligned_cols=227  Identities=9%  Similarity=-0.053  Sum_probs=136.6

Q ss_pred             EEEEECCCeEEEEEccCCCCceeEEec-----------------------------CCCCCeEEEEEeeCCCeEEEEec-
Q 013347          114 VAFISGSTQVIVRDYEDSGKDACILTS-----------------------------DSQRDVKVLEWRPNGGRSLSVGC-  163 (444)
Q Consensus       114 la~~~~dg~v~iw~~~~~~~~~~~~~~-----------------------------~~~~~v~~l~~s~~~~~ll~~~~-  163 (444)
                      +++++.+|+|+||++.+ .+....+..                             .|.........+|||+++++... 
T Consensus        14 f~Sgg~sG~V~V~dlpS-~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPS-MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEECBTTCCEEEEEETT-TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeCCCCCcEEEEeCCC-CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            44566899999999976 333222211                             13334455556899888877765 


Q ss_pred             CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeE--EEEeeCC--------
Q 013347          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYL--ASASYES--------  233 (444)
Q Consensus       164 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l--~~~~~d~--------  233 (444)
                      ++.|.++|+++.+...                         .+.-.....+..++|+|+|+.+  +..+.+.        
T Consensus        93 ~~rVavIDl~t~k~~~-------------------------ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          93 NTRVARIRLDIMKTDK-------------------------ITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             TTEEEEEETTTTEEEE-------------------------EEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             CCEEEEEECCCCcEee-------------------------EEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            5899999998443322                         2221123678999999999954  3333321        


Q ss_pred             --------CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCC-cEEEEECCCCceeccccCCCceeEEEECC
Q 013347          234 --------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDP  304 (444)
Q Consensus       234 --------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~v~~~~~sp  304 (444)
                              ..+..+|..+.+........+.+..++|+|+|+++++++.+. .+..++..+.+.............+.++|
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    023457777776655444456788999999999998777653 33333433333321111111223445678


Q ss_pred             CCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          305 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       305 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      +|+++.++.+  + +..+....            ....+..+........+.++|||+++++++..     +++|.|||+
T Consensus       228 dGk~~~v~~~--~-v~vvd~~~------------~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~-----~~tvsv~d~  287 (441)
T d1qnia2         228 AGNFKTIGDS--K-VPVVDGRG------------ESEFTRYIPVPKNPHGLNTSPDGKYFIANGKL-----SPTVSVIAI  287 (441)
T ss_dssp             TTCCBCCTTC--C-CCEEECSS------------SCSSEEEECCBSSCCCEEECTTSCEEEEECTT-----SSBEEEEEG
T ss_pred             CCCEEEeCCC--C-cEEEEccc------------CCceEEEEeCCCCccCceECCCCCEEEEeCCc-----CCcEEEEEe
Confidence            8887765322  1 11222110            22334455555556789999999999877654     289999998


Q ss_pred             CC
Q 013347          385 RR  386 (444)
Q Consensus       385 ~~  386 (444)
                      ++
T Consensus       288 ~k  289 (441)
T d1qnia2         288 DK  289 (441)
T ss_dssp             GG
T ss_pred             eh
Confidence            64

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.3e-09  Score=101.21  Aligned_cols=297  Identities=13%  Similarity=0.129  Sum_probs=159.0

Q ss_pred             cceEEEEEecCCCeEEEEE---------CCCeEEEEEccCCCCceeEE-ecCCCCCeEEEEEeeCCCeEEEEecCCcEEE
Q 013347          100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~---------~dg~v~iw~~~~~~~~~~~~-~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~i  169 (444)
                      ..+....||||+++++...         ..+.+.++|+.+. ....+. .......+....|||||+.++.+ .++.|.+
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~-~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~  138 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-DPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYY  138 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-CCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC-ceeeccCccCCccccceeeeccCCceEEEE-ecceEEE
Confidence            4577889999999988764         3577889999873 332221 12234456678999998887665 4677888


Q ss_pred             EecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe--------------
Q 013347          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--------------  235 (444)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~--------------  235 (444)
                      .+...+...+....+....+-  ....  .|.    ........-..+-|||||++||....|...              
T Consensus       139 ~~~~~~~~~~lt~~g~~~~i~--nG~~--d~v----yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~  210 (465)
T d1xfda1         139 CAHVGKQAIRVVSTGKEGVIY--NGLS--DWL----YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (465)
T ss_dssp             ESSSSSCCEEEECCCBTTTEE--EEEC--CHH----HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             EecCCCceEEEecccCcceee--cccc--chh----hhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccc
Confidence            887654443333322100000  0000  000    000000122567899999999887644323              


Q ss_pred             -------------------EEEEEcCCCCceeeec-------CCCCeEEEEEecCCCeEEEEec-C---CcEEEEECCCC
Q 013347          236 -------------------FTIWDVAQGLGTPIRR-------GFGGLSILKWSPTGDYFFAAKF-D---GTFYLWETNTW  285 (444)
Q Consensus       236 -------------------i~iwd~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~~~~-d---~~v~iwd~~~~  285 (444)
                                         +.++|+.++.......       ....+..+.|+|+++.++.... +   ..|.++|..++
T Consensus       211 p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg  290 (465)
T d1xfda1         211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (465)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             ceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence                               3444544433221110       1123567899999886654432 2   26888999999


Q ss_pred             ceeccc--cCCCce----eEEEECCCCCEEEE--EEcCCc--eEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeE
Q 013347          286 TSEPWS--STSGFV----TGATWDPEGRMILL--AFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEK  354 (444)
Q Consensus       286 ~~~~~~--~~~~~v----~~~~~sp~g~~l~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~  354 (444)
                      +...+.  ....+|    ....|+|+|+.++.  ....++  .++.+.+....       .......++.++... .|..
T Consensus       291 ~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~-------~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         291 VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ-------PNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSS-------CCSSSCCCCBSCCSSSCEEE
T ss_pred             cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEecccc-------ccCCCceeEEeccCCceEEE
Confidence            874432  223332    35689999986543  222333  33444332211       111333445555555 6776


Q ss_pred             E-EECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          355 I-AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       355 ~-~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      + +|+++++.|...+...+. ....++--++..+...  .++..-........++.|||+|+|
T Consensus       364 i~~~d~~~~~vyF~a~~~~p-~~~hly~v~l~g~~~~--~~lt~~~~~~~~~~~~~~S~~~~y  423 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLP-RRRQLYSANTVGNFNR--QCLSCDLVENCTYFSASFSHSMDF  423 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCT-TCCEEEEECSSTTCCC--BCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             EEEEcCCCCEEEEEEeCCCC-CceEEEEEECCCCCcc--eeeccccCCCCCEEEEEECCCCCE
Confidence            5 689988877654432111 1133433344433221  011000123345678999999998

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=5e-09  Score=89.37  Aligned_cols=233  Identities=9%  Similarity=0.017  Sum_probs=140.8

Q ss_pred             ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~  178 (444)
                      .-++++++++|+..++.. ..+.+..++....  ........-......+++++++. ++++... +.+++++-....  
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~--   89 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ--   89 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC------CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC--
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc--eEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccce--
Confidence            357899999999766544 4566776666542  22222122233567889999964 5555544 455554433111  


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee-cCCCCeE
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR-RGFGGLS  257 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~-~~~~~v~  257 (444)
                       .+.                      ...+  ...+.++++.++++++++-.... .+..++.......... .......
T Consensus        90 -~~~----------------------~~~~--~~~p~~iavd~~g~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~  143 (260)
T d1rwia_          90 -TVL----------------------PFDG--LNYPEGLAVDTQGAVYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPD  143 (260)
T ss_dssp             -EEC----------------------CCCS--CCSEEEEEECTTCCEEEEEGGGT-EEEEECTTCSSCEECCCCSCCSCC
T ss_pred             -eee----------------------eeee--eeecccccccccceeEeeccccc-cccccccccceeeeeeecccCCcc
Confidence             111                      0111  24678999999998776655554 7888877654433322 2234567


Q ss_pred             EEEEecCCCeEEEEecCCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          258 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       258 ~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .++++++++.+++...++.|..+|........+. ........+++.++|++++ +......+..+...           
T Consensus       144 ~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~v-sd~~~~~i~~~~~~-----------  211 (260)
T d1rwia_         144 GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAG-----------  211 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTTEEEEECTT-----------
T ss_pred             eeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeee-eecCCCEEEEEeCC-----------
Confidence            8999999998888888889999998876554433 4445678999999998655 44545555544321           


Q ss_pred             CCCcccccccc--cCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcC
Q 013347          337 PVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       337 ~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                         ......+.  +-.....|+++++|.++++-..+      ++|+.++..
T Consensus       212 ---~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~------~rI~~i~~~  253 (260)
T d1rwia_         212 ---STTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN------DRVVKLTSL  253 (260)
T ss_dssp             ---CSCCEECCCCSCCCEEEEEECTTCCEEEEEGGG------TEEEEECCC
T ss_pred             ---CCeEEEEccCCCCCeEEEEEeCCCCEEEEECCC------CEEEEEeCC
Confidence               11111111  11256899999999876664444      667666543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=1.8e-08  Score=86.81  Aligned_cols=234  Identities=12%  Similarity=0.081  Sum_probs=148.8

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEec-----CCCCCeEEEEEeeCCCeEEEEec--CCcEEEEecCC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSY  174 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~-----~~~~~v~~l~~s~~~~~ll~~~~--dg~v~iw~~~~  174 (444)
                      -+.++++++|+++++-..++.|++|+.+  ++....+..     +.......+++.++.+.++.+..  ++.|..++.. 
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~--G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC--CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            5789999999988776678899999876  443333311     11223456666666555554443  3566666654 


Q ss_pred             CCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee---c
Q 013347          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR---R  251 (444)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~---~  251 (444)
                      ..                         ....+..........+++.++|+++++....+ .+.+++.... .....   .
T Consensus       102 g~-------------------------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~-~~~~~~~~g~-~~~~~g~~~  154 (279)
T d1q7fa_         102 GQ-------------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVM-RVIIFDQNGN-VLHKFGCSK  154 (279)
T ss_dssp             SC-------------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTT-EEEEECTTSC-EEEEEECTT
T ss_pred             cc-------------------------ceeecCCCcccccceeccccCCcEEEEeeccc-eeeEeccCCc-eeecccccc
Confidence            11                         11122222235678899999998777766665 8888886543 33322   2


Q ss_pred             CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          252 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       252 ~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      +......+++.++++.+++....+.|++||........+  .+.......+++.++|+.+++-..+...+..+   +.  
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f---~~--  229 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF---TQ--  229 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE---CT--
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE---CC--
Confidence            345678899999998888888889999999876544333  23445678999999999666433333333332   21  


Q ss_pred             CcCCCcCCCCcccccccccCC---ceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  386 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~  386 (444)
                               ++..+.++....   ....+++.|||++++ +..+      +.|++|....
T Consensus       230 ---------~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n------~~v~~fr~~~  273 (279)
T d1q7fa_         230 ---------DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKD------YRLYIYRYVQ  273 (279)
T ss_dssp             ---------TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETT------TEEEEEECSC
T ss_pred             ---------CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCC------CeEEEEEeee
Confidence                     233333333221   578899999997554 4555      8999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.21  E-value=2.9e-09  Score=93.05  Aligned_cols=221  Identities=16%  Similarity=0.164  Sum_probs=140.5

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      .+..++++|||+.+++...+++|..|+.+  +....                         +... ...+.+++|+++|+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~~-------------------------~~~~-~~~~~gla~~~dG~   80 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD--GNQQI-------------------------HATV-EGKVSGLAFTSNGD   80 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEE-------------------------EEEC-SSEEEEEEECTTSC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEEE-------------------------EEcC-CCCcceEEEcCCCC
Confidence            57789999997655555557887777654  22111                         1111 36789999999999


Q ss_pred             eEEEEeeCCCeEEEEEcCCCCce--eee--cCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc---------
Q 013347          225 YLASASYESSSFTIWDVAQGLGT--PIR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------  291 (444)
Q Consensus       225 ~l~~~~~d~~~i~iwd~~~~~~~--~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------  291 (444)
                      ++++...++ .+..|+.......  .+.  ........+++.++++++++.+.++.+..+|..++......         
T Consensus        81 l~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  159 (302)
T d2p4oa1          81 LVATGWNAD-SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  159 (302)
T ss_dssp             EEEEEECTT-SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             eEEEecCCc-eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceee
Confidence            888777766 8888887654322  222  23456889999999998888888889999998876542111         


Q ss_pred             --cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEec
Q 013347          292 --STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK  369 (444)
Q Consensus       292 --~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~  369 (444)
                        ........+.+  ++..++.+......++.+......          .......+........++++++|++.++...
T Consensus       160 ~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~pdgia~d~dG~l~va~~~  227 (302)
T d2p4oa1         160 SESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTD----------KPGEPEIFVEQTNIDDFAFDVEGNLYGATHI  227 (302)
T ss_dssp             TTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTS----------CBCCCEEEEESCCCSSEEEBTTCCEEEECBT
T ss_pred             ccCcccccccccc--cCCceeeecCCCCeEEeccccccc----------cccccccccCCCCCcceEECCCCCEEEEEcC
Confidence              11223455555  456677777777777777653211          0111112222235678999999997777666


Q ss_pred             CCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceee---eeCCCC
Q 013347          370 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF---SFHDKF  416 (444)
Q Consensus       370 d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~---spdg~~  416 (444)
                      +      +.|..++...+...    +.........+++++|   ++|++.
T Consensus       228 ~------~~V~~i~p~G~~~~----~~~~~~~~~~pt~vafg~~~~D~~~  267 (302)
T d2p4oa1         228 Y------NSVVRIAPDRSTTI----IAQAEQGVIGSTAVAFGQTEGDCTA  267 (302)
T ss_dssp             T------CCEEEECTTCCEEE----EECGGGTCTTEEEEEECCSTTTTTE
T ss_pred             C------CcEEEECCCCCEEE----EEecCCCCCCceEEEEcCCCCCCCE
Confidence            6      88999987653222    1122223345678999   556654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=4.4e-09  Score=89.75  Aligned_cols=236  Identities=11%  Similarity=0.008  Sum_probs=143.0

Q ss_pred             CCeEEEEEeeCCCeEEEEecC-CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC
Q 013347          144 RDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  222 (444)
                      ....++++.++|..+++.... +.+..++.........                        ...+  ......++++++
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------------~~~~--~~~p~gvav~~~   67 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------------PFNG--LYQPQGLAVDGA   67 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------------CCCS--CCSCCCEEECTT
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------------ccCC--ccCceEEEEcCC
Confidence            456899999997656655443 6677666552211111                        1111  135678899999


Q ss_pred             CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-cCCCceeEEE
Q 013347          223 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGAT  301 (444)
Q Consensus       223 ~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~  301 (444)
                      |+.+++....+ .+++++-.+...............++++++++++++-..+..+..++.......... ........++
T Consensus        68 g~i~v~d~~~~-~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          68 GTVYVTDFNNR-VVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             CCEEEEETTTE-EEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             CCEEEeeeeec-eeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceee
Confidence            98766554443 666655444433322233466889999999998887777777888887665543222 2234567899


Q ss_pred             ECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEEEEEecCCCccccceE
Q 013347          302 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLI  379 (444)
Q Consensus       302 ~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i  379 (444)
                      ++++|+.++ +......+..++..              ......+.  .-.....++++++|+++++....      +.|
T Consensus       147 ~~~~g~~~v-~~~~~~~i~~~d~~--------------~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~------~~i  205 (260)
T d1rwia_         147 VDNSGNVYV-TDTDNNRVVKLEAE--------------SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQV  205 (260)
T ss_dssp             ECTTCCEEE-EEGGGTEEEEECTT--------------TCCEEECCCSSCCSEEEEEECTTCCEEEEETTT------TEE
T ss_pred             ecCCCCEee-eccccccccccccc--------------cceeeeeeccccCCCccceeeeeeeeeeeecCC------CEE
Confidence            999998655 44444555554421              11111121  12256889999999877766555      788


Q ss_pred             EEEEcCCCCeEEEEEeeeee-CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeeee
Q 013347          380 AIYDARRTPLISLSLIGFIR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  438 (444)
Q Consensus       380 ~vwd~~~~~~~~~~~~~~~~-~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~~  438 (444)
                      ..++.......      .+. ..-..+..++++++|++     ....+.+++|..+.-+-
T Consensus       206 ~~~~~~~~~~~------~~~~~~~~~P~~i~~d~~g~l-----~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         206 VKLLAGSTTST------VLPFTGLNTPLAVAVDSDRTV-----YVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             EEECTTCSCCE------ECCCCSCCCEEEEEECTTCCE-----EEEEGGGTEEEEECCCG
T ss_pred             EEEeCCCCeEE------EEccCCCCCeEEEEEeCCCCE-----EEEECCCCEEEEEeCCC
Confidence            88887654322      111 12245678999988764     55678889998776543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=1e-08  Score=89.58  Aligned_cols=227  Identities=14%  Similarity=0.085  Sum_probs=141.9

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCccee
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~  181 (444)
                      +..++++|||+++++...+++|..|+..  +.....  ......+.+++|++||+.+++...++.+..|+......... 
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~--g~~~~~--~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~-  104 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD--GNQQIH--ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-  104 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE--EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCC--CCEEEE--EcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee-
Confidence            6789999999999988888988777755  333322  35567899999999987666666678888777653221110 


Q ss_pred             eccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeec----------
Q 013347          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRR----------  251 (444)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~----------  251 (444)
                                          .+....  .......+++.++++++++.+.++ .+..++...+.......          
T Consensus       105 --------------------~~~~~~--~~~~~n~i~~~~~g~~~v~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T d2p4oa1         105 --------------------TLLTLP--DAIFLNGITPLSDTQYLTADSYRG-AIWLIDVVQPSGSIWLEHPMLARSNSE  161 (302)
T ss_dssp             --------------------EEEECT--TCSCEEEEEESSSSEEEEEETTTT-EEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             --------------------eccccC--CccccceeEEccCCCEEeeccccc-cceeeeccCCcceeEecCCccceeecc
Confidence                                111111  125688999999999888777776 88888887664332111          


Q ss_pred             -CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceec---cccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecC
Q 013347          252 -GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  327 (444)
Q Consensus       252 -~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~  327 (444)
                       .......+.++. +..+++.+..+.|..++........   ..........++++++|++.+ +...++.+..+.... 
T Consensus       162 ~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~v-a~~~~~~V~~i~p~G-  238 (302)
T d2p4oa1         162 SVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATHIYNSVVRIAPDR-  238 (302)
T ss_dssp             CCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECBTTCCEEEECTTC-
T ss_pred             CcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEE-EEcCCCcEEEECCCC-
Confidence             112345666653 3344666778889888887644321   112234467899999998655 444445555554210 


Q ss_pred             CCCcCCCcCCCCcccccccc-cCCceeEEEE---CCCCCEEEEEecC
Q 013347          328 PPSLDAHLLPVDLPDIVSLT-GSQGIEKIAW---DASGERLAVSYKG  370 (444)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~---spdg~~l~~~~~d  370 (444)
                                 ....+.... +....++++|   ++|++.|++++..
T Consensus       239 -----------~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         239 -----------STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -----------CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -----------CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                       011122222 2226789999   6788888876654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.13  E-value=2.3e-08  Score=87.54  Aligned_cols=246  Identities=13%  Similarity=0.120  Sum_probs=147.9

Q ss_pred             CeEEEEEeeCCCeEEEEec-------CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEE
Q 013347          145 DVKVLEWRPNGGRSLSVGC-------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (444)
                      ....++|.++|+.+++...       ++.|..||........ +...                    ..... ......+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~-~~~~--------------------~~~~~-~g~P~Gl   76 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKP--------------------EVNGY-GGIPAGC   76 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECC--------------------EETTE-ECCEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEE-EECC--------------------ccccC-CCcceeE
Confidence            4677899999765554322       2567777766322111 1000                    00001 1346789


Q ss_pred             EEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-C----CCeEEEEEecCCCeEEEEec---------------CCcE
Q 013347          218 SWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-F----GGLSILKWSPTGDYFFAAKF---------------DGTF  277 (444)
Q Consensus       218 ~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~----~~v~~~~~sp~~~~l~~~~~---------------d~~v  277 (444)
                      +|.++++.++++...+ .|..++............ .    .....+++.++|++.++-..               .|.|
T Consensus        77 ~~~~dg~~l~vad~~~-~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v  155 (314)
T d1pjxa_          77 QCDRDANQLFVADMRL-GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI  155 (314)
T ss_dssp             EECSSSSEEEEEETTT-EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred             EEeCCCCEEEEEECCC-eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceE
Confidence            9999999888887766 788888766533322211 1    13578999999988776432               2345


Q ss_pred             EEEECCCCceeccccCCCceeEEEECCCCC----EEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--c
Q 013347          278 YLWETNTWTSEPWSSTSGFVTGATWDPEGR----MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--G  351 (444)
Q Consensus       278 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  351 (444)
                      ..++... +...+...-...+.++|+|++.    .|+++......++.+++....     .+.  ..+....+.+..  .
T Consensus       156 ~~~~~dg-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g-----~~~--~~~~~~~~~~~~~~~  227 (314)
T d1pjxa_         156 YCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA-----KIE--NKKVWGHIPGTHEGG  227 (314)
T ss_dssp             EEECTTS-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT-----EEE--EEEEEEECCCCSSCE
T ss_pred             EEEeecC-ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcc-----ccc--eeeEEEEcccccccc
Confidence            5555433 3333333333457899998765    567676777778877764311     000  001111222211  3


Q ss_pred             eeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCCCceEEE-Eeccce
Q 013347          352 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV-CWSSGF  430 (444)
Q Consensus       352 v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~~~~l~~-~~~~g~  430 (444)
                      ...+++..+|++.++....      +.|++||.+.++..     ..+..+...+++++|.||++.     |-| ...+|+
T Consensus       228 pdGiavD~~GnlyVa~~~~------g~I~~~dp~~g~~~-----~~i~~p~~~~t~~afg~d~~~-----lyVt~~~~g~  291 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKT-----IFVTEHENNA  291 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSE-----EEEEETTTTE
T ss_pred             ceeeEEecCCcEEEEEcCC------CEEEEEeCCCCEEE-----EEEECCCCCEEEEEEeCCCCE-----EEEEECCCCc
Confidence            5689999999987776655      89999999877654     234455567789999998863     333 356788


Q ss_pred             eeeeeee
Q 013347          431 CCTYPLI  437 (444)
Q Consensus       431 i~~~~~~  437 (444)
                      |..+++-
T Consensus       292 i~~~~~~  298 (314)
T d1pjxa_         292 VWKFEWQ  298 (314)
T ss_dssp             EEEEECS
T ss_pred             EEEEECC
Confidence            8887753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=5.8e-08  Score=85.20  Aligned_cols=234  Identities=15%  Similarity=0.150  Sum_probs=138.9

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  224 (444)
                      .+..++|.++|+.+++-...+.|..|+.+.......                         +... ......+++++||+
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~-------------------------~~~~-~~~p~gla~~~dG~   94 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP-------------------------FVSH-KANPAAIKIHKDGR   94 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------------------------EECS-SSSEEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE-------------------------EeCC-CCCeeEEEECCCCC
Confidence            456789999975444333468888777663221111                         1111 25678999999998


Q ss_pred             eEEEEeeC--C-CeEEEEEcCCCCceeeecC---CCCeEEEEEecCCCeEEEEec------CCcEEEEECCCCceecccc
Q 013347          225 YLASASYE--S-SSFTIWDVAQGLGTPIRRG---FGGLSILKWSPTGDYFFAAKF------DGTFYLWETNTWTSEPWSS  292 (444)
Q Consensus       225 ~l~~~~~d--~-~~i~iwd~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~  292 (444)
                      ++++...+  . +.+...+............   ......+++.++|++.++...      .+.+..++...+....+..
T Consensus        95 l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~  174 (319)
T d2dg1a1          95 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ  174 (319)
T ss_dssp             EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred             EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee
Confidence            77765332  1 1455566655555444332   245778999999987665432      2346666666555444443


Q ss_pred             CCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCC
Q 013347          293 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD  372 (444)
Q Consensus       293 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~  372 (444)
                      .-...+.++|+|+++.|+++.....+++.+++.......    ............+......+++.++|++.++...+  
T Consensus       175 ~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~----~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~--  248 (319)
T d2dg1a1         175 NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI----QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ--  248 (319)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE----EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT--
T ss_pred             ccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee----ccccceeeeccCCccceeeeeEcCCCCEEEEEcCC--
Confidence            344568899999999888887777788887763211000    00000001111112245689999999987777666  


Q ss_pred             ccccceEEEEEcCCCCeEEEEEe-eeeeCCCCCCcceeeeeCCC
Q 013347          373 DIYKGLIAIYDARRTPLISLSLI-GFIRGPGDNPKPVAFSFHDK  415 (444)
Q Consensus       373 ~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~i~~v~~spdg~  415 (444)
                          +.|.+|+.+ ++++....+ ..-.++...+++++|.+++.
T Consensus       249 ----g~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         249 ----GRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTN  287 (319)
T ss_dssp             ----TEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred             ----CEEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence                899999964 555421111 00113445678999988654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.05  E-value=2.6e-07  Score=80.89  Aligned_cols=243  Identities=8%  Similarity=0.019  Sum_probs=139.9

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC--CcEEEEecCCCCC-c
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN-A  178 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d--g~v~iw~~~~~~~-~  178 (444)
                      +-.++|.++|++.++-...+.|..|+.+. +...... .........+++++||+.+++...+  ....++.+..... .
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g-~~~~~~~-~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCC-CeEEEEE-eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            56899999999776666788888887765 2222332 3455678899999997555544332  3334444432211 1


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeC-----CCeEEEEEcCCCCceeeecCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYE-----SSSFTIWDVAQGLGTPIRRGF  253 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~~i~iwd~~~~~~~~~~~~~  253 (444)
                      .....                       .......+..+++.++|++.++....     .+.+..++........+...-
T Consensus       120 ~~~~~-----------------------~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~  176 (319)
T d2dg1a1         120 QDIIE-----------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI  176 (319)
T ss_dssp             EEEEC-----------------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE
T ss_pred             eeecc-----------------------CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc
Confidence            11110                       00112457889999999866653221     114555555444444444444


Q ss_pred             CCeEEEEEecCCCeE-EEEecCCcEEEEECCCCce--ec-------cccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          254 GGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTS--EP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       254 ~~v~~~~~sp~~~~l-~~~~~d~~v~iwd~~~~~~--~~-------~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      .....++|+|+++.| ++-+..+.|..||+.....  ..       ..........+++.++|++.++ ....+.+..++
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va-~~~~g~V~~~~  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA-MYGQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE-EETTTEEEEEC
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE-EcCCCEEEEEC
Confidence            566789999999877 5556678999999864321  10       1122234678999999986554 44445555554


Q ss_pred             eecCCCCcCCCcCCCCcccccccc------cCC-ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLT------GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      -              +++.+..+.      ++. .+++++|.|++..+++.+.+......+.|+..+.
T Consensus       256 p--------------~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~  309 (319)
T d2dg1a1         256 K--------------RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  309 (319)
T ss_dssp             T--------------TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             C--------------CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence            2              222222221      223 5789999998887777665422111244554444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.02  E-value=2.7e-08  Score=85.46  Aligned_cols=235  Identities=12%  Similarity=0.094  Sum_probs=122.7

Q ss_pred             EEecC--CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecC----C--cEEEEecCCCCC
Q 013347          106 SWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----G--GICIWAPSYPGN  177 (444)
Q Consensus       106 ~~sp~--g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~d----g--~v~iw~~~~~~~  177 (444)
                      ..|||  |+.+|..+ ++.|.+.++.. ++ ...++ .+.+.+...+|||||++++.....    .  .|.+++...+ .
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~-g~-~~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g-~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKS-GS-TRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG-E   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTT-CC-EEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT-E
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCC-CC-EEEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC-c
Confidence            46899  99999875 56777778875 33 44443 566778999999999988876542    2  3555555422 1


Q ss_pred             cceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC-----CeEEEEEcCCCCceeeecC
Q 013347          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-----SSFTIWDVAQGLGTPIRRG  252 (444)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~~i~iwd~~~~~~~~~~~~  252 (444)
                      ...+....                  ...... ........|+|+|+.|+......     ..+...+...+.....  .
T Consensus        80 ~~~lt~~~------------------~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  138 (281)
T d1k32a2          80 IKRITYFS------------------GKSTGR-RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL--N  138 (281)
T ss_dssp             EEECCCCC------------------EEEETT-EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC--C
T ss_pred             eEEeeecC------------------CCccCc-cccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe--c
Confidence            11111110                  000011 13456789999999998764321     1345555554433222  2


Q ss_pred             CCCeEEEEEecCCCeE-EEEecCC-----------cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcC--Cce
Q 013347          253 FGGLSILKWSPTGDYF-FAAKFDG-----------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG--SLT  318 (444)
Q Consensus       253 ~~~v~~~~~sp~~~~l-~~~~~d~-----------~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~--~~~  318 (444)
                      ....... +.+++..+ +......           ...+......................++++.  ++.....  ...
T Consensus       139 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  215 (281)
T d1k32a2         139 LGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQ  215 (281)
T ss_dssp             SCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCE
T ss_pred             CCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccccccc
Confidence            2222333 34444443 3322211           1122222222222222333444555566553  3333322  233


Q ss_pred             EEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          319 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ++.+++              .....+.++.+.......|+|||+.|+... +      +.|+++|+.+++..
T Consensus       216 l~~~d~--------------~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~-~------~~l~~~d~~~g~~~  266 (281)
T d1k32a2         216 IYSTDL--------------DGKDLRKHTSFTDYYPRHLNTDGRRILFSK-G------GSIYIFNPDTEKIE  266 (281)
T ss_dssp             EEEEET--------------TSCSCEECCCCCSSCEEEEEESSSCEEEEE-T------TEEEEECTTTCCEE
T ss_pred             eEEEeC--------------CCCceEEeecCCCcccccCcCCCCEEEEEe-C------CEEEEEECCCCCEE
Confidence            444443              233334444333233346899999988754 4      78999999988765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2e-07  Score=86.14  Aligned_cols=274  Identities=15%  Similarity=0.136  Sum_probs=146.5

Q ss_pred             ceEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCe-----------------EEEEEeeCCCeEEEEec
Q 013347          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV-----------------KVLEWRPNGGRSLSVGC  163 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v-----------------~~l~~s~~~~~ll~~~~  163 (444)
                      .+....|||||+.||... ++.|.+.+... +....+...+..+.|                 .++-|||||++|+....
T Consensus       115 ~l~~~~wSPDG~~iafv~-~~nl~~~~~~~-~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         115 KLQYAGWGPKGQQLIFIF-ENNIYYCAHVG-KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             CCSBCCBCSSTTCEEEEE-TTEEEEESSSS-SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             ccceeeeccCCceEEEEe-cceEEEEecCC-CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            356689999999999975 67777777765 333333322322222                 46789999999888765


Q ss_pred             C-CcEEEEecCCCCC-----cceee---cccccccccc---ccCCC-CceEEEE--EeeccCCCceEEEEEccCCCeEEE
Q 013347          164 K-GGICIWAPSYPGN-----AASVR---SGAASFLGAL---SRGPG-TRWTLVD--FLRSQNGEQITALSWGPDGRYLAS  228 (444)
Q Consensus       164 d-g~v~iw~~~~~~~-----~~~~~---~~~~~~~~~~---~~~~~-~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~  228 (444)
                      | ..|..+.+.....     ...+.   .+...+...+   ..... ..+....  .... ....+..+.|++++++++.
T Consensus       193 D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~-~~~y~~~~~W~~d~~~~~~  271 (465)
T d1xfda1         193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM-REYYITMVKWATSTKVAVT  271 (465)
T ss_dssp             ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG-SSEEEEEEEESSSSEEEEE
T ss_pred             cccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcc-ccceeeeeEEcCCCeEEEE
Confidence            4 6666665542111     11111   0000000000   00000 0000000  0011 1124678999999987665


Q ss_pred             EeeCC---CeEEEEEcCCCCceeeecC--CCC----eEEEEEecCCCeEEE--Ee-cCC--cEEEEECC-------CCce
Q 013347          229 ASYES---SSFTIWDVAQGLGTPIRRG--FGG----LSILKWSPTGDYFFA--AK-FDG--TFYLWETN-------TWTS  287 (444)
Q Consensus       229 ~~~d~---~~i~iwd~~~~~~~~~~~~--~~~----v~~~~~sp~~~~l~~--~~-~d~--~v~iwd~~-------~~~~  287 (444)
                      ...-.   ..+.++|..++++..+...  ...    -....|+|||+.++.  .+ .+|  .++.+++.       .+..
T Consensus       272 ~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~  351 (465)
T d1xfda1         272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI  351 (465)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC
T ss_pred             EEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCcee
Confidence            43311   1578899999887665432  222    234679999986532  22 232  44444332       2222


Q ss_pred             eccccCCCceeEE-EECCCCCEEEEEEcCC----ceEEEEEeecCCCCcCCCcCCCCcccccc-cccCCceeEEEECCCC
Q 013347          288 EPWSSTSGFVTGA-TWDPEGRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVS-LTGSQGIEKIAWDASG  361 (444)
Q Consensus       288 ~~~~~~~~~v~~~-~~sp~g~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~spdg  361 (444)
                      ..+....-.|..+ .|+++++.|++.+..+    ..++.+.+....          ...++.. +.......++.|||+|
T Consensus       352 ~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~----------~~~~lt~~~~~~~~~~~~~~S~~~  421 (465)
T d1xfda1         352 QSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----------NRQCLSCDLVENCTYFSASFSHSM  421 (465)
T ss_dssp             CBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----------CCBCSSTTSSSSCCCCEEEECTTS
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC----------cceeeccccCCCCCEEEEEECCCC
Confidence            3444445556665 6899998887655432    124444332110          0111111 1112267799999999


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      ++++....+.+.   -.+.+++..+++.+
T Consensus       422 ~y~v~~~s~~~~---P~~~~~~~~~~~~~  447 (465)
T d1xfda1         422 DFFLLKCEGPGV---PMVTVHNTTDKKKM  447 (465)
T ss_dssp             SEEEEECCSSSS---CCEEEEETTTCCEE
T ss_pred             CEEEEEeecCCC---CeEEEEECCCCCEE
Confidence            999876665432   45788888877665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.93  E-value=2.9e-07  Score=80.32  Aligned_cols=194  Identities=9%  Similarity=0.061  Sum_probs=122.6

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCC----CCeEEEEEeeCCCeEEEEecCCc-----------
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCKGG-----------  166 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~----~~v~~l~~s~~~~~ll~~~~dg~-----------  166 (444)
                      -..++|+++|+.|+++...+.+..++.+.  ...........    .....+++.++|+.+++- ..+.           
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g--~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd-~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDG--TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA-PAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTS--CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE-CBCBCTTSCCCBTTS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCC--cEEEEEeccccccccCCCcEEEECCCCCEEEec-CccCcccccccceec
Confidence            46799999999888888777788888764  22222211111    135779999996555443 2111           


Q ss_pred             ---EEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCC----eEEEEeeCCCeEEEE
Q 013347          167 ---ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR----YLASASYESSSFTIW  239 (444)
Q Consensus       167 ---v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~l~~~~~d~~~i~iw  239 (444)
                         -++|.+...+                      +....  .. . ....+.++|+|++.    .|+.+....+.|..|
T Consensus       150 ~~~G~v~~~~~dg----------------------~~~~~--~~-~-~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~  203 (314)
T d1pjxa_         150 EKFGSIYCFTTDG----------------------QMIQV--DT-A-FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY  203 (314)
T ss_dssp             SSCEEEEEECTTS----------------------CEEEE--EE-E-ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred             cCCceEEEEeecC----------------------ceeEe--eC-C-cceeeeeEECCCCCcceeEEEEEeecccceEEe
Confidence               1233332111                      11111  11 1 13457899998765    455554333489999


Q ss_pred             EcCCCCcee---e-ec----CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee-ccccCCCceeEEEECCCCCEEE
Q 013347          240 DVAQGLGTP---I-RR----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMIL  310 (444)
Q Consensus       240 d~~~~~~~~---~-~~----~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~  310 (444)
                      |+.......   . ..    .......+++..+|++.++....+.|.+||.++++.. .+......+++++|.|+++.|+
T Consensus       204 d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~ly  283 (314)
T d1pjxa_         204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred             eccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEE
Confidence            876443221   1 11    1234568999999998888878899999999887753 3444456789999999998888


Q ss_pred             EEEcCCceEEEEEe
Q 013347          311 LAFAGSLTLGSIHF  324 (444)
Q Consensus       311 ~~~~~~~~~~~~~~  324 (444)
                      ++...++.++.+++
T Consensus       284 Vt~~~~g~i~~~~~  297 (314)
T d1pjxa_         284 VTEHENNAVWKFEW  297 (314)
T ss_dssp             EEETTTTEEEEEEC
T ss_pred             EEECCCCcEEEEEC
Confidence            78777788888775

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=4.4e-06  Score=71.35  Aligned_cols=239  Identities=8%  Similarity=0.002  Sum_probs=141.6

Q ss_pred             CeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccC-C
Q 013347          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-G  223 (444)
Q Consensus       145 ~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~  223 (444)
                      ....|+++++++.+++=...+.|++||.+ ......+....                    ...........+++.++ +
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~--------------------~~~~~~~~p~~~~~~~~~~   82 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG--------------------KRDSQLLYPNRVAVVRNSG   82 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS--------------------SSTTCBSSEEEEEEETTTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccC--------------------CCccccccccccccccccc
Confidence            46789999996544443456889999865 22111111100                    00000123455665554 4


Q ss_pred             CeEEEEeeCCCeEEEEEcCCCCceeeec--CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc--ccCCCceeE
Q 013347          224 RYLASASYESSSFTIWDVAQGLGTPIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTG  299 (444)
Q Consensus       224 ~~l~~~~~d~~~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~~v~~  299 (444)
                      ..+++.....+.|.+++... +......  .......+++.++++++++....+.+.+++........+  ..+......
T Consensus        83 ~~~~~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_          83 DIIVTERSPTHQIQIYNQYG-QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             EEEEEECGGGCEEEEECTTS-CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEE
T ss_pred             ccceeccCCccccccccccc-cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccce
Confidence            44444433333777777543 3333222  235678899999999888877778899998765433332  345567788


Q ss_pred             EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCC-ceeEEEECCCCCEEEEEecCCCcccc
Q 013347          300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQ-GIEKIAWDASGERLAVSYKGGDDIYK  376 (444)
Q Consensus       300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~v~~~~~spdg~~l~~~~~d~~~~~d  376 (444)
                      +++.++++.++ +......++.++.              .+..+.++.  +.. ....|++.++|+++++-..++     
T Consensus       162 i~~d~~g~i~v-~d~~~~~V~~~d~--------------~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~-----  221 (279)
T d1q7fa_         162 VVVNDKQEIFI-SDNRAHCVKVFNY--------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN-----  221 (279)
T ss_dssp             EEECSSSEEEE-EEGGGTEEEEEET--------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS-----
T ss_pred             eeeccceeEEe-eeccccceeeeec--------------CCceeeeecccccccCCcccccccCCeEEEEECCCC-----
Confidence            99999987655 4444455665542              223333332  122 578899999999776644331     


Q ss_pred             ceEEEEEcCCCCeEEEEEeeeee--CCCCCCcceeeeeCCCCCCCceEEEEeccceeeeeeee
Q 013347          377 GLIAIYDARRTPLISLSLIGFIR--GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  437 (444)
Q Consensus       377 ~~i~vwd~~~~~~~~~~~~~~~~--~~~~~i~~v~~spdg~~~~~~~l~~~~~~g~i~~~~~~  437 (444)
                      +.|.+|+.. ++.+     ..+.  ........+++.|||++      .+.-.+.+|..|..-
T Consensus       222 ~~v~~f~~~-G~~~-----~~~~~~~~~~~p~~vav~~dG~l------~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         222 FNLTIFTQD-GQLI-----SALESKVKHAQCFDVALMDDGSV------VLASKDYRLYIYRYV  272 (279)
T ss_dssp             CEEEEECTT-SCEE-----EEEEESSCCSCEEEEEEETTTEE------EEEETTTEEEEEECS
T ss_pred             cEEEEECCC-CCEE-----EEEeCCCCCCCEeEEEEeCCCcE------EEEeCCCeEEEEEee
Confidence            579999854 5543     2222  22345678999999864      344467888888754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.76  E-value=6.3e-06  Score=70.91  Aligned_cols=221  Identities=14%  Similarity=0.109  Sum_probs=143.2

Q ss_pred             EEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCe
Q 013347          147 KVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRY  225 (444)
Q Consensus       147 ~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  225 (444)
                      .+..|.+..+.|+-+.- .+.|..||...+..                          ..+..  ...+.++++.++|++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--------------------------~~~~~--~~~~~~i~~~~dg~l   72 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK--------------------------TVHAL--PFMGSALAKISDSKQ   72 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------------------EEEEC--SSCEEEEEEEETTEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE--------------------------EEEEC--CCCcEEEEEecCCCE
Confidence            35678876677766653 47888888773211                          11111  256889999999877


Q ss_pred             EEEEeeCCCeEEEEEcCCCCceeeecCC-----CCeEEEEEecCCCeEEEEec----CCcEEEEECCCCceeccccCCCc
Q 013347          226 LASASYESSSFTIWDVAQGLGTPIRRGF-----GGLSILKWSPTGDYFFAAKF----DGTFYLWETNTWTSEPWSSTSGF  296 (444)
Q Consensus       226 l~~~~~d~~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~  296 (444)
                      +++ +.+  .+.++|..+++...+....     ..+..+.+.|+|++.++...    .+.-.+|.+..++...+...-..
T Consensus        73 ~va-~~~--gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~  149 (295)
T d2ghsa1          73 LIA-SDD--GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI  149 (295)
T ss_dssp             EEE-ETT--EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS
T ss_pred             EEE-EeC--ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC
Confidence            765 444  5999999988766654321     24788999999997765543    23456777767766544444445


Q ss_pred             eeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCC-ceeEEEECCCCCEEEEEecCCCccc
Q 013347          297 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIY  375 (444)
Q Consensus       297 v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~d~~~~~  375 (444)
                      .+.++|+++++.++.+......++.+++.........     .......+.+.. ....+++..+|++.++....     
T Consensus       150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~-----~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-----  219 (295)
T d2ghsa1         150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-----  219 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-----
T ss_pred             cceeeecCCCceEEEeecccceeeEeeeccccccccc-----ceEEEeccCcccccccceEEcCCCCEEeeeeCC-----
Confidence            6899999999998888887788888876321110000     001111122222 57889999999987776666     


Q ss_pred             cceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeee-eCCC
Q 013347          376 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS-FHDK  415 (444)
Q Consensus       376 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~s-pdg~  415 (444)
                       +.|..||.+ ++++     ..+.-....+++++|- +|.+
T Consensus       220 -g~V~~~dp~-G~~~-----~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         220 -GAVDRYDTD-GNHI-----ARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             -TEEEEECTT-CCEE-----EEEECSCSBEEEEEEESTTSC
T ss_pred             -CceEEecCC-CcEe-----eEecCCCCceEEEEEeCCCCC
Confidence             889999965 5544     3444455678899996 5544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.66  E-value=2.2e-05  Score=67.35  Aligned_cols=222  Identities=14%  Similarity=0.090  Sum_probs=137.4

Q ss_pred             EEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          104 GVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       104 ~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      +..|++....|.... ..+.|..||..+ ++ ...+  .....+.++++.++| .+++++. ..+.++|..+.+.. .+.
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~-g~-~~~~--~~~~~~~~i~~~~dg-~l~va~~-~gl~~~d~~tg~~~-~l~   94 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLAS-GR-KTVH--ALPFMGSALAKISDS-KQLIASD-DGLFLRDTATGVLT-LHA   94 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTT-TE-EEEE--ECSSCEEEEEEEETT-EEEEEET-TEEEEEETTTCCEE-EEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCC-Ce-EEEE--ECCCCcEEEEEecCC-CEEEEEe-CccEEeecccceee-EEe
Confidence            467888666555554 677888898886 32 2332  235578899999994 5665554 45888888743221 111


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC---CeEEEEEcCCCCceeeecCCCCeEEE
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES---SSFTIWDVAQGLGTPIRRGFGGLSIL  259 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~~i~iwd~~~~~~~~~~~~~~~v~~~  259 (444)
                      ..                     ........++.+.+.|+|++.++.....   +.-.+|.+..++...+...-.....+
T Consensus        95 ~~---------------------~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~  153 (295)
T d2ghsa1          95 EL---------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSI  153 (295)
T ss_dssp             CS---------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEE
T ss_pred             ee---------------------ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCccee
Confidence            00                     0111123678999999998766654321   14567777777665555545567789


Q ss_pred             EEecCCCeE-EEEecCCcEEEEECCCCce------e---ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCC
Q 013347          260 KWSPTGDYF-FAAKFDGTFYLWETNTWTS------E---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  329 (444)
Q Consensus       260 ~~sp~~~~l-~~~~~d~~v~iwd~~~~~~------~---~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~  329 (444)
                      +|+++++.+ ++-+..+.|..|++.....      .   ......+....+++..+|++.++.. ..+.+..++-     
T Consensus       154 ~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~V~~~dp-----  227 (295)
T d2ghsa1         154 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDT-----  227 (295)
T ss_dssp             EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECT-----
T ss_pred             eecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCceEEecC-----
Confidence            999999877 4555678899888753221      1   1223455678899999998766443 3344444431     


Q ss_pred             CcCCCcCCCCcccccccccCC-ceeEEEEC-CCCCEEEEEe
Q 013347          330 SLDAHLLPVDLPDIVSLTGSQ-GIEKIAWD-ASGERLAVSY  368 (444)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s-pdg~~l~~~~  368 (444)
                               +++.+..+.-.. .+++++|- ||.+.|++.+
T Consensus       228 ---------~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 ---------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             ---------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ---------CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence                     344444554433 68999995 7877666544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.64  E-value=8.8e-07  Score=75.63  Aligned_cols=94  Identities=18%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             EEccC--CCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEec-CC-----cEEEEECCCCceec
Q 013347          218 SWGPD--GRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DG-----TFYLWETNTWTSEP  289 (444)
Q Consensus       218 ~~sp~--~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-----~v~iwd~~~~~~~~  289 (444)
                      ..+||  |+.++..+ ++ .|.+.|+.+++..++..+.+.....+|||||+.|+.... ++     .|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~-dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CD-DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CC-cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99998875 44 799999999988888888888999999999999975432 22     48888888888765


Q ss_pred             cccCC-------CceeEEEECCCCCEEEEEE
Q 013347          290 WSSTS-------GFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       290 ~~~~~-------~~v~~~~~sp~g~~l~~~~  313 (444)
                      +....       .....+.|+|+|+.|++..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            54332       2456789999999988754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=0.00029  Score=58.89  Aligned_cols=251  Identities=10%  Similarity=-0.002  Sum_probs=150.8

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCc---eeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeecccc
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAA  186 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~  186 (444)
                      |.+|+.+. .+.|+-.+++.....   .......+...+.+|+|.+..++++-+.. .+.|+..+++.......+..+  
T Consensus         1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~--   77 (263)
T d1npea_           1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD--   77 (263)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT--
T ss_pred             CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec--
Confidence            34555543 456777777642111   11112234456778999888677766644 477888777633222111111  


Q ss_pred             ccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecC-CCCeEEEEEecCC
Q 013347          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRG-FGGLSILKWSPTG  265 (444)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~  265 (444)
                                              ...+.++++..-++.|+.+....+.|.+.++.......+... ...+..++++|..
T Consensus        78 ------------------------~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~  133 (263)
T d1npea_          78 ------------------------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (263)
T ss_dssp             ------------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             ------------------------cccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEeccc
Confidence                                    246789999876777776665545999999987766555443 3678999999987


Q ss_pred             CeEEEEec---CCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcc
Q 013347          266 DYFFAAKF---DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  341 (444)
Q Consensus       266 ~~l~~~~~---d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      .+++-...   ...|..-++.......+. ..-.....+++.+.++.|+.+......+...++.              +.
T Consensus       134 g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~--------------g~  199 (263)
T d1npea_         134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--------------QP  199 (263)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--------------EE
T ss_pred             CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECC--------------CC
Confidence            77754332   223555566655443332 3345678999999988888887777777777652              22


Q ss_pred             cccc-cccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeC
Q 013347          342 DIVS-LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  413 (444)
Q Consensus       342 ~~~~-~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spd  413 (444)
                      ..+. +.+.....++++.  +.+|..+..+.     +.|...|..+++...    ...+.....+..++..++
T Consensus       200 ~~~~v~~~~~~P~~lav~--~~~lYwtd~~~-----~~I~~~~~~~g~~~~----~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         200 GRRKVLEGLQYPFAVTSY--GKNLYYTDWKT-----NSVIAMDLAISKEMD----TFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EEEEEEECCCSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTTEEEE----EECCSSCCCCCCEEEECS
T ss_pred             CeEEEECCCCCcEEEEEE--CCEEEEEECCC-----CEEEEEECCCCccce----EECCCCCCCcceEEEeCC
Confidence            2221 2222234567764  56677666543     789999998876541    122233445667766554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.35  E-value=6.9e-05  Score=65.62  Aligned_cols=232  Identities=11%  Similarity=0.056  Sum_probs=131.5

Q ss_pred             eCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEcc--CCCeEEEE
Q 013347          153 PNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRYLASA  229 (444)
Q Consensus       153 ~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~  229 (444)
                      +||+++++... ++.|.+-|++..+..+.+                         .-.....+..+...+  +-.+++..
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi-------------------------~iPn~~~~HG~r~~~~p~T~YV~~~  151 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-------------------------EIPNAKGIHGLRPQKWPRSNYVFCN  151 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEE-------------------------ECSSCCSEEEEEECCSSBCSEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEE-------------------------ecCCCCCCceeecccCCCeEEEEcc
Confidence            36666666665 488888888744332211                         111124556665544  44455555


Q ss_pred             eeCC-----------------CeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC------------------
Q 013347          230 SYES-----------------SSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD------------------  274 (444)
Q Consensus       230 ~~d~-----------------~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------------------  274 (444)
                      +...                 +.+.++|..+.+......-.+....++++++|+++++.+.+                  
T Consensus       152 ~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i  231 (459)
T d1fwxa2         152 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  231 (459)
T ss_dssp             ECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             CccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEE
Confidence            5422                 13567888877666544445677789999999999877643                  


Q ss_pred             --------------------CcEEEEECCCCc---eeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCc
Q 013347          275 --------------------GTFYLWETNTWT---SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  331 (444)
Q Consensus       275 --------------------~~v~iwd~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                                          +.+.+.|.+...   ...+..-......+.++|||+++++++.-+..+-++++......+
T Consensus       232 ~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~  311 (459)
T d1fwxa2         232 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF  311 (459)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH
T ss_pred             EEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh
Confidence                                123344433211   111122233467889999999999998888888999875422111


Q ss_pred             CCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCC----------CCeEEEEEeeeeeCC
Q 013347          332 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----------TPLISLSLIGFIRGP  401 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~----------~~~~~~~~~~~~~~~  401 (444)
                      ...+.+ .........-.-.-..-+|+..|.-..+.--|      ..|.-|++..          ..++....++.-.||
T Consensus       312 ~~~~~~-~~~~~~e~elglgPLht~fd~~g~aytslfid------s~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh  384 (459)
T d1fwxa2         312 YENADP-RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD------SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH  384 (459)
T ss_dssp             HSCC-G-GGGEEECCBCCSCEEEEEECTTSEEEEEETTT------TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE
T ss_pred             cccCCc-cccEEeecccCcCccccccCCCceEEEEeecc------ceEEEEecchhhhhhccccCCcceeccccccCCCC
Confidence            111110 00001111111145667898888544444455      8999999842          244444444444566


Q ss_pred             CCCCcceeeeeCCCC
Q 013347          402 GDNPKPVAFSFHDKF  416 (444)
Q Consensus       402 ~~~i~~v~~spdg~~  416 (444)
                      ......-...|||+|
T Consensus       385 ~~~~~g~t~~~dgk~  399 (459)
T d1fwxa2         385 LKTVMGETLDATNDW  399 (459)
T ss_dssp             EEETTTTSTTCCSSE
T ss_pred             CccCcCCcCCCCCCE
Confidence            544445566778887

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.01  E-value=0.0038  Score=54.44  Aligned_cols=249  Identities=12%  Similarity=0.004  Sum_probs=134.7

Q ss_pred             cCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCC--CeEEEEecCC------------------cE
Q 013347          109 QHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCKG------------------GI  167 (444)
Q Consensus       109 p~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~--~~ll~~~~dg------------------~v  167 (444)
                      +||++|++.. .+++|.+.|+.+ .+...+........+..+...++.  .++++.+.+.                  .+
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~-fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcc-eeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            3899998876 788999999987 455455555566677877775543  3444444321                  12


Q ss_pred             EEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCC-------------
Q 013347          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESS-------------  234 (444)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-------------  234 (444)
                      .+.|.++.+...++.                       +    ......+.++++|+++++.+.+..             
T Consensus       176 t~ID~~tm~V~~QV~-----------------------V----~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~  228 (459)
T d1fwxa2         176 TAVDADKWEVAWQVL-----------------------V----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  228 (459)
T ss_dssp             EEEETTTTEEEEEEE-----------------------E----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             EEEecCCceEEEEee-----------------------e----CCChhccccCCCCCEEEEEeccccCCcchhhcccccc
Confidence            333433211111111                       1    134567888888888877664310             


Q ss_pred             -eE-----------------------EEEEcCCC---CceeeecCCCCeEEEEEecCCCeEEEE-ecCCcEEEEECCCCc
Q 013347          235 -SF-----------------------TIWDVAQG---LGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT  286 (444)
Q Consensus       235 -~i-----------------------~iwd~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~  286 (444)
                       .+                       .+-|.+..   .......-......+.++|||++++++ ..+.++.++|++.-.
T Consensus       229 D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         229 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             eEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence             23                       33333321   112222223445678999999999554 558899999986321


Q ss_pred             e--------e----ccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeE
Q 013347          287 S--------E----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  354 (444)
Q Consensus       287 ~--------~----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  354 (444)
                      .        .    ......-....-+|+..| ..+++.--+..+-.|++........+.   .....+..+.-|-.+-.
T Consensus       309 ~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~---~~~~v~~k~~v~y~~gh  384 (459)
T d1fwxa2         309 AVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE---KVDPIKDKLDVHYQPGH  384 (459)
T ss_dssp             HHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC---SCCCEEEEEECSSCEEE
T ss_pred             hhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecchhhhhhccc---cCCcceeccccccCCCC
Confidence            1        0    011223344567888887 466666666788888864210000000   00111222222211111


Q ss_pred             E------EECCCCCEEEEEecCCCcc-------ccceEEEEEcCCCCe
Q 013347          355 I------AWDASGERLAVSYKGGDDI-------YKGLIAIYDARRTPL  389 (444)
Q Consensus       355 ~------~~spdg~~l~~~~~d~~~~-------~d~~i~vwd~~~~~~  389 (444)
                      +      ...|||+||++...-+-++       .-..-+|.|+...+.
T Consensus       385 ~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m  432 (459)
T d1fwxa2         385 LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  432 (459)
T ss_dssp             EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CccCcCCcCCCCCCEEEEecccccccccCCCCCCCccceEEEcCCCee
Confidence            1      2468999999987543322       114577888875554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.00  E-value=0.0018  Score=57.18  Aligned_cols=257  Identities=9%  Similarity=0.009  Sum_probs=133.4

Q ss_pred             eEEEEEecCCCeEEEEECCC-----------eEEEEEccCCCCce-eEEecCCCCCeEEEEEeeCCCeEEEEecC-CcEE
Q 013347          102 LQGVSWHQHKHIVAFISGST-----------QVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGIC  168 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg-----------~v~iw~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~ll~~~~d-g~v~  168 (444)
                      +.......+|+.++.|+.+.           .+.+||..++.... ......+.......++.+++..++.++.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            34455566889888887421           36789998752221 12223444445567788996555555544 7899


Q ss_pred             EEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCC-----CeEEEEEcCC
Q 013347          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYES-----SSFTIWDVAQ  243 (444)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~~i~iwd~~~  243 (444)
                      +||..+.                       .|.....+...  ..-..++..+||+.++.++.+.     ..+.+||..+
T Consensus       102 ~yd~~~~-----------------------~w~~~~~~~~~--r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         102 LYDSSSD-----------------------SWIPGPDMQVA--RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEGGGT-----------------------EEEECCCCSSC--CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EecCccC-----------------------ccccccccccc--ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            9998722                       23222222221  2334567778999999887532     2689999887


Q ss_pred             CCceeeecCC---------------CCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc-------cCCC--ceeE
Q 013347          244 GLGTPIRRGF---------------GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSG--FVTG  299 (444)
Q Consensus       244 ~~~~~~~~~~---------------~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~-------~~~~--~v~~  299 (444)
                      .+-..+....               ..-..+..-++|+.++.+...+.+.++|..+.......       .+..  .-.+
T Consensus       157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (387)
T d1k3ia3         157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  236 (387)
T ss_dssp             TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence            6433221100               01112233456777777777777888888776542211       1111  1122


Q ss_pred             EEE-CCCCCEEEEEEcCCc-------eEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCC
Q 013347          300 ATW-DPEGRMILLAFAGSL-------TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG  371 (444)
Q Consensus       300 ~~~-sp~g~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~  371 (444)
                      +.+ ..+++.+++++....       ......++.......      ....+..+.....-.+....+||++++.|+.+.
T Consensus       237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~  310 (387)
T d1k3ia3         237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN------TVFASNGLYFARTFHTSVVLPDGSTFITGGQRR  310 (387)
T ss_dssp             EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE------EEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred             EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCC------ceeeccccccccccceeeeccCCeEEEECCccc
Confidence            333 235666666543221       112222221100000      000111111111223455678999999988642


Q ss_pred             Cc-----cccceEEEEEcCCCCe
Q 013347          372 DD-----IYKGLIAIYDARRTPL  389 (444)
Q Consensus       372 ~~-----~~d~~i~vwd~~~~~~  389 (444)
                      ..     ..-.++.+||..+++-
T Consensus       311 ~~~~~~~~~~~~ve~Ydp~~~~W  333 (387)
T d1k3ia3         311 GIPFEDSTPVFTPEIYVPEQDTF  333 (387)
T ss_dssp             CCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             CccCCCCcEeceEEEEECCCCeE
Confidence            11     1113678999987654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=0.0068  Score=50.21  Aligned_cols=194  Identities=6%  Similarity=-0.035  Sum_probs=123.2

Q ss_pred             ceEEEEEecCCCeEEEEE-CCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCc
Q 013347          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (444)
Q Consensus       101 ~v~~~~~sp~g~~la~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~  178 (444)
                      .+.+++|++..+.|.... .++.|+..+++. ....... ......+.++++..-++.|+.+.. .+.|.+.+++.... 
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~-~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-  113 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-  113 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEccc-CCcEEEE-EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-
Confidence            377899999888887765 567788777775 3333333 333457889999876677776655 48899988873221 


Q ss_pred             ceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCe--EEEEEcCCCCceeeec-CCCC
Q 013347          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSS--FTIWDVAQGLGTPIRR-GFGG  255 (444)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~--i~iwd~~~~~~~~~~~-~~~~  255 (444)
                      ..+.                        ... ...+..++++|...+++........  |..-++.......+.. .-..
T Consensus       114 ~~l~------------------------~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~  168 (263)
T d1npea_         114 RVLF------------------------DTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGL  168 (263)
T ss_dssp             EEEE------------------------CSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSC
T ss_pred             EEEe------------------------ccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccc
Confidence            1111                        111 2567899999977777655433213  4444565544444433 2356


Q ss_pred             eEEEEEecCCCeEEEE-ecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEe
Q 013347          256 LSILKWSPTGDYFFAA-KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  324 (444)
Q Consensus       256 v~~~~~sp~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~  324 (444)
                      ...+++++.++.|.-+ ...+.|...|+.......+........++++.  +.+|+.+......+..++.
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence            7899999887777544 55778999999876654433322345677775  5677777666676766664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=0.01  Score=49.27  Aligned_cols=158  Identities=13%  Similarity=0.010  Sum_probs=101.4

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC----cee-eecCCCCeEEEEEecCCCeEE-EEecCCcEEEEECCCC
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGL----GTP-IRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTW  285 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~----~~~-~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~  285 (444)
                      ..+..++|++..+.|+.+....+.|...++....    ... +......+..+++.+.++.|. +-...++|.+.++...
T Consensus        30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~  109 (266)
T d1ijqa1          30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (266)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc
Confidence            5678999999888887766544477777665422    122 222335677899988776664 4455678999999877


Q ss_pred             ceec-cccCCCceeEEEECCCCCEEEEEEc-CCceEEEEEeecCCCCcCCCcCCCCcccccccccCC--ceeEEEECCCC
Q 013347          286 TSEP-WSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ--GIEKIAWDASG  361 (444)
Q Consensus       286 ~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg  361 (444)
                      .... ..........++++|...+|+.+.. ....+....+              .+.....+....  ....+++++.+
T Consensus       110 ~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~--------------dGs~~~~l~~~~~~~p~gl~iD~~~  175 (266)
T d1ijqa1         110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------------NGVDIYSLVTENIQWPNGITLDLLS  175 (266)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET--------------TSCCEEEEECSSCSCEEEEEEETTT
T ss_pred             eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc--------------CCCceecccccccceeeEEEeeccc
Confidence            6543 3344566899999997777776543 2234444443              223233333222  57899999998


Q ss_pred             CEEEEEecCCCccccceEEEEEcCCCC
Q 013347          362 ERLAVSYKGGDDIYKGLIAIYDARRTP  388 (444)
Q Consensus       362 ~~l~~~~~d~~~~~d~~i~vwd~~~~~  388 (444)
                      +.|..+....     +.|...++....
T Consensus       176 ~~lYw~d~~~-----~~I~~~~~dG~~  197 (266)
T d1ijqa1         176 GRLYWVDSKL-----HSISSIDVNGGN  197 (266)
T ss_dssp             TEEEEEETTT-----TEEEEEETTSCS
T ss_pred             cEEEEecCCc-----CEEEEEECCCCC
Confidence            8888875542     789999987654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.015  Score=48.14  Aligned_cols=234  Identities=10%  Similarity=-0.007  Sum_probs=138.9

Q ss_pred             eEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEec-CCcEEEEecCCCCCcceeeccccccccc
Q 013347          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (444)
Q Consensus       113 ~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~  191 (444)
                      +|+.+. ...|+-.+++. .......  .....+.+++|.+..+.++-+.. .+.|.-.+++.......           
T Consensus         3 fLl~s~-~~~I~~~~l~~-~~~~~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~-----------   67 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDR-SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-----------   67 (266)
T ss_dssp             EEEEEC-BSSEEEEETTS-CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------
T ss_pred             EEEEEC-CCeEEEEECCC-Ccceeee--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc-----------
Confidence            344443 44588888875 3333332  34556788999988777766654 36666666542111100           


Q ss_pred             cccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceee-ecCCCCeEEEEEecCCCeEEE
Q 013347          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI-RRGFGGLSILKWSPTGDYFFA  270 (444)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~  270 (444)
                                 ...+.......+..+++.+-++.|+.+....+.|.+.++.......+ .........++++|...+|.-
T Consensus        68 -----------~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~  136 (266)
T d1ijqa1          68 -----------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW  136 (266)
T ss_dssp             -----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             -----------eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEE
Confidence                       00111111245778999887777777665555999999987665443 334467899999997666644


Q ss_pred             Ee--cCCcEEEEECCCCceeccc-cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc
Q 013347          271 AK--FDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  347 (444)
Q Consensus       271 ~~--~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      ..  ..+.|...++.......+. ..-...+.+++++.++.|+.+......+..+++...           ....+....
T Consensus       137 ~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~-----------~~~~~~~~~  205 (266)
T d1ijqa1         137 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-----------NRKTILEDE  205 (266)
T ss_dssp             EECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----------SCEEEEECT
T ss_pred             eccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC-----------CEEEEEeCC
Confidence            33  3456777888776554443 334567899999999988888777777777775211           001111111


Q ss_pred             cC-CceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeE
Q 013347          348 GS-QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  390 (444)
Q Consensus       348 ~~-~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~  390 (444)
                      .. ....++++.  +.+|..+....     +.|...+..++...
T Consensus       206 ~~~~~p~~lav~--~~~ly~td~~~-----~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         206 KRLAHPFSLAVF--EDKVFWTDIIN-----EAIFSANRLTGSDV  242 (266)
T ss_dssp             TTTSSEEEEEEE--TTEEEEEETTT-----TEEEEEETTTCCCC
T ss_pred             CcccccEEEEEE--CCEEEEEECCC-----CeEEEEECCCCcce
Confidence            11 134566665  45666665432     78888887776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.28  E-value=0.013  Score=50.35  Aligned_cols=188  Identities=11%  Similarity=0.080  Sum_probs=105.4

Q ss_pred             eEEEEEecCCCeEEEEE------------CCCeEEEEEccCCCCceeEEe-cCCC-----CCeEEEEE--eeCCCe-EEE
Q 013347          102 LQGVSWHQHKHIVAFIS------------GSTQVIVRDYEDSGKDACILT-SDSQ-----RDVKVLEW--RPNGGR-SLS  160 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~------------~dg~v~iw~~~~~~~~~~~~~-~~~~-----~~v~~l~~--s~~~~~-ll~  160 (444)
                      .-+++..|+|..+++++            ..|.+.++|+.+.......+. .+..     -....+..  .+++.. |++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            44678889987776643            148899999886432222221 1110     12233433  234332 333


Q ss_pred             Ee---cCCcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEe--eC---
Q 013347          161 VG---CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASAS--YE---  232 (444)
Q Consensus       161 ~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d---  232 (444)
                      +.   ...+|.+|++.....                     .+....++........+++++..++..+++-.  ..   
T Consensus       117 vnH~~~~~~ieif~~~~~~~---------------------~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEK---------------------SLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY  175 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTT---------------------EEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHH
T ss_pred             EeccCCCceeEEEEEeCCCC---------------------eEEEEeecCCccccCccceEEecCCCEEEecCccCcChh
Confidence            32   235666666652221                     22334445544445788999999998777721  10   


Q ss_pred             ---------CCeEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEE-EEecCCcEEEEECCCCcee---ccccCCCceeE
Q 013347          233 ---------SSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE---PWSSTSGFVTG  299 (444)
Q Consensus       233 ---------~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~v~iwd~~~~~~~---~~~~~~~~v~~  299 (444)
                               .....+|....++.......-.....++++||+++|+ +-+..++|+.|++...+..   ....-.+..-.
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDN  255 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN  255 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCc
Confidence                     0133445444444444444446788999999999885 4456789999998754421   12234455667


Q ss_pred             EEECC-CCCEEE
Q 013347          300 ATWDP-EGRMIL  310 (444)
Q Consensus       300 ~~~sp-~g~~l~  310 (444)
                      +.+.+ +|.+.+
T Consensus       256 i~~d~~~g~lwv  267 (340)
T d1v04a_         256 ISVDPVTGDLWV  267 (340)
T ss_dssp             EEECTTTCCEEE
T ss_pred             cEEecCCCEEEE
Confidence            77876 444444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.057  Score=44.43  Aligned_cols=261  Identities=12%  Similarity=0.145  Sum_probs=151.0

Q ss_pred             CCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceeeccccccccccccCCCCc
Q 013347          120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR  199 (444)
Q Consensus       120 dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (444)
                      ..+|.|.|+.......+... ..    -+.-.+|. ..+++--...++++||++++.....                   
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi-~A----dsAIMhP~-~~IiALrag~~LQiFnletK~klks-------------------   98 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI-SA----DSAIMNPA-SKVIALKAGKTLQIFNIEMKSKMKA-------------------   98 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC-CC----SEEEECSS-SSEEEEEETTEEEEEETTTTEEEEE-------------------
T ss_pred             CceEEEEECCCCCcceeccc-ch----hhhhcCCC-CcEEEEecCCeEEEEehhHhhhhce-------------------
Confidence            34788889887433332221 11    23446788 5666666678999999995443322                   


Q ss_pred             eEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCC-ceeeec-C----CCCeEEEEEecCCCeEEEEe-
Q 013347          200 WTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGL-GTPIRR-G----FGGLSILKWSPTGDYFFAAK-  272 (444)
Q Consensus       200 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~-~~~~~~-~----~~~v~~~~~sp~~~~l~~~~-  272 (444)
                            +.-  ...|.-=.|-.+ +.|+..+..  .|+-|+++... ...+.. |    ...|..-..+++.++++..+ 
T Consensus        99 ------~~~--~e~VvfWkWis~-~~L~lVT~t--aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI  167 (327)
T d1utca2          99 ------HTM--TDDVTFWKWISL-NTVALVTDN--AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  167 (327)
T ss_dssp             ------EEC--SSCCCEEEESSS-SEEEEECSS--EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred             ------EEc--CCCcEEEEecCC-CEEEEEcCC--ceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeE
Confidence                  222  246666667544 456665544  79999996432 233332 2    24577778888999885432 


Q ss_pred             ------cCCcEEEEECCCCceeccccCCCceeEEEECCCC---CEEEEEE--cCCceEEEEEeecCCC---CcCCCcCCC
Q 013347          273 ------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEG---RMILLAF--AGSLTLGSIHFASKPP---SLDAHLLPV  338 (444)
Q Consensus       273 ------~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~  338 (444)
                            -.|.+.+|..+.+..+.+.+|......+.+.-+.   ..++.+.  ...+++..+++...+.   .+..+..+.
T Consensus       168 ~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi  247 (327)
T d1utca2         168 SAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV  247 (327)
T ss_dssp             EEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred             ecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEE
Confidence                  2368899999988778888887665555443221   2333322  2335677777754321   111100000


Q ss_pred             CcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCCCC
Q 013347          339 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ  418 (444)
Q Consensus       339 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~~~  418 (444)
                      ..++  .. ..+-..++..|+....+...+.-      |.|.+||++++..+...     +-..+.|...+  ++.  ..
T Consensus       248 ~fpp--ea-~~DFPvamqvs~kygiiyviTK~------G~i~lyDleTgt~i~~n-----RIs~~~iF~~a--~~~--~~  309 (327)
T d1utca2         248 FFPP--EA-QNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCIYMN-----RISGETIFVTA--PHE--AT  309 (327)
T ss_dssp             CCCT--TC-TTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEEEEE-----ECCSSCEEEEE--EET--TT
T ss_pred             ECCc--cc-cCCcEEEEEeeccCCEEEEEecC------cEEEEEEcccccEEEEe-----ecCCCceEEec--cCC--CC
Confidence            0000  00 11234578888888888888887      99999999998877322     22234433222  221  34


Q ss_pred             CceEEEEeccceeeeee
Q 013347          419 GPLLSVCWSSGFCCTYP  435 (444)
Q Consensus       419 ~~~l~~~~~~g~i~~~~  435 (444)
                      ++++++. .+|.|....
T Consensus       310 ~Gi~~VN-r~GqVl~vs  325 (327)
T d1utca2         310 AGIIGVN-RKGQVLSVC  325 (327)
T ss_dssp             TEEEEEE-TTSEEEEEE
T ss_pred             ceEEEEC-CCCeEEEEE
Confidence            6677776 778887554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.14  Score=45.46  Aligned_cols=100  Identities=21%  Similarity=0.309  Sum_probs=66.2

Q ss_pred             eEEEEEccCCCeEEEEeeCCC----eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecC---------------
Q 013347          214 ITALSWGPDGRYLASASYESS----SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---------------  274 (444)
Q Consensus       214 v~~~~~sp~~~~l~~~~~d~~----~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------------  274 (444)
                      +..+++|||+++++.+-..+|    .++++|+.+++.....-.......++|.+|++.|+....+               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            445678999999987644333    7999999999765422212223568999999988654322               


Q ss_pred             -CcEEEEECCCCcee---cccc--CCCceeEEEECCCCCEEEEEE
Q 013347          275 -GTFYLWETNTWTSE---PWSS--TSGFVTGATWDPEGRMILLAF  313 (444)
Q Consensus       275 -~~v~iwd~~~~~~~---~~~~--~~~~v~~~~~sp~g~~l~~~~  313 (444)
                       ..|..+.+.+....   .+..  ....+..+..++++++++...
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence             25788888776542   1222  233566788899999987543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.64  E-value=0.16  Score=43.24  Aligned_cols=138  Identities=11%  Similarity=0.093  Sum_probs=79.4

Q ss_pred             ccCCCe-EEEEee--CCCeEEEEEcCCCCce-e-e--ecC--CCCeEEEEEecCCCeEEEEec---------------CC
Q 013347          220 GPDGRY-LASASY--ESSSFTIWDVAQGLGT-P-I--RRG--FGGLSILKWSPTGDYFFAAKF---------------DG  275 (444)
Q Consensus       220 sp~~~~-l~~~~~--d~~~i~iwd~~~~~~~-~-~--~~~--~~~v~~~~~sp~~~~l~~~~~---------------d~  275 (444)
                      .++|+. |++...  .+.+|.+|++...... . .  ..+  .....++++..++.+++|-..               -+
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            456653 444332  2238999988655432 1 1  112  245788999989987777421               12


Q ss_pred             cEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEE
Q 013347          276 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  355 (444)
Q Consensus       276 ~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  355 (444)
                      ...+|..+.++.......-...+.++++|++++|+++.....+++.+.+....          .......+.-....-.+
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~----------~l~~~~~~~l~~~pDNi  256 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW----------TLTPLRVLSFDTLVDNI  256 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS----------CEEEEEEEECSSEEEEE
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc----------ccceEEEecCCCCCCcc
Confidence            34455555555544434445689999999999999988877788777763210          11111222222246678


Q ss_pred             EECCC-CCEEEEE
Q 013347          356 AWDAS-GERLAVS  367 (444)
Q Consensus       356 ~~spd-g~~l~~~  367 (444)
                      .+.++ |.+.+++
T Consensus       257 ~~d~~~g~lwva~  269 (340)
T d1v04a_         257 SVDPVTGDLWVGC  269 (340)
T ss_dssp             EECTTTCCEEEEE
T ss_pred             EEecCCCEEEEEE
Confidence            88764 5544443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.57  E-value=0.22  Score=43.98  Aligned_cols=246  Identities=10%  Similarity=0.080  Sum_probs=121.3

Q ss_pred             eEEEEEecCCCeEEEEE-CC----CeEEEEEccCCCCcee-EEecCCCCCeEEEEEeeCCCeEEEEecC-----------
Q 013347          102 LQGVSWHQHKHIVAFIS-GS----TQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGCK-----------  164 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~-~d----g~v~iw~~~~~~~~~~-~~~~~~~~~v~~l~~s~~~~~ll~~~~d-----------  164 (444)
                      +..+++|||++++|.+- ..    ..++++|+.++ +... .+.   ......++|.+|+..++.+..+           
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg-~~~~~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-KELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-EEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcc-eecccccc---cccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            55678899999999643 22    36999999984 3222 221   1112468899998888776533           


Q ss_pred             -----CcEEEEecCCCCCcceeeccccccccccccCCCCceEEEEEeeccC-CCceEEEEEccCCCeEEEEeeCC--Ce-
Q 013347          165 -----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITALSWGPDGRYLASASYES--SS-  235 (444)
Q Consensus       165 -----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~--~~-  235 (444)
                           ..|..+.+.+......+                       .+.... ...+..+..++++++++.....+  .. 
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~-----------------------v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~  259 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDIL-----------------------CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEE-----------------------EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             ccCCcceEEEEECCCCcccccc-----------------------ccccccCCceEEeeeccCCcceeeEEeeccCCccE
Confidence                 24556665533221111                       111111 13566788899999987544321  13 


Q ss_pred             -EEEEEcCCCCc--------eeeecCCCCeEEEEEecCCCeEEEEec---CCcEEEEECCCCce---eccc-cCCCceeE
Q 013347          236 -FTIWDVAQGLG--------TPIRRGFGGLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTS---EPWS-STSGFVTG  299 (444)
Q Consensus       236 -i~iwd~~~~~~--------~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~v~iwd~~~~~~---~~~~-~~~~~v~~  299 (444)
                       +.+.|+.....        ..+...........-+.++.+++....   ++.|...++.....   ..+. .+...+..
T Consensus       260 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~  339 (430)
T d1qfma1         260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE  339 (430)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE
T ss_pred             EEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee
Confidence             44455543211        122222222222222323334444332   35777777776543   2233 34444554


Q ss_pred             EEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc--cCCceeEEEECCCCCEEEEE-ecCCCcccc
Q 013347          300 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVS-YKGGDDIYK  376 (444)
Q Consensus       300 ~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~-~~d~~~~~d  376 (444)
                      -.+...+.+|+.....++.-. +.+.+.           .......+.  ....+..+...++...+... ++-...   
T Consensus       340 ~~~~~~~~~lvl~~~~~~~~~-l~v~~~-----------~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP---  404 (430)
T d1qfma1         340 WVACVRSNFLVLCYLHDVKNT-LQLHDL-----------ATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP---  404 (430)
T ss_dssp             EEEEETTTEEEEEEEETTEEE-EEEEET-----------TTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCC---
T ss_pred             eEEEEECCEEEEEEEcCCEeE-EEEEEC-----------CCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCC---
Confidence            445555556665543333322 222221           111111111  11145555555555443322 221111   


Q ss_pred             ceEEEEEcCCCCe
Q 013347          377 GLIAIYDARRTPL  389 (444)
Q Consensus       377 ~~i~vwd~~~~~~  389 (444)
                      .+++-+|+.+++.
T Consensus       405 ~~~y~~Dl~t~~~  417 (430)
T d1qfma1         405 GIIYHCDLTKEEL  417 (430)
T ss_dssp             CEEEEEETTSSSC
T ss_pred             CeEEEEECCCCCc
Confidence            7899999988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.33  E-value=0.044  Score=47.78  Aligned_cols=120  Identities=10%  Similarity=0.126  Sum_probs=72.9

Q ss_pred             EEEecCCCeEEEEecCC-----------cEEEEECCCCceecc----ccCCCceeEEEECCCCCEEEEEEcCCceEEEEE
Q 013347          259 LKWSPTGDYFFAAKFDG-----------TFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  323 (444)
Q Consensus       259 ~~~sp~~~~l~~~~~d~-----------~v~iwd~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~  323 (444)
                      .+...+|+.++.|+.+.           .+.+||..+++....    ..+.......++.++|++++.++.+...+..++
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33444677666666421           377899998876332    234344456788999999887766655666665


Q ss_pred             eecCCCCcCCCcCCCCcccccccccCCceeEEEECCCCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          324 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      .....           ......+.....-..++..+||++++.++.+.....-+.+.+||..+++-
T Consensus       105 ~~~~~-----------w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         105 SSSDS-----------WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             GGGTE-----------EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             CccCc-----------ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            43221           11111111112234677788999999988654333335799999988654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.15  E-value=0.19  Score=38.75  Aligned_cols=225  Identities=13%  Similarity=0.144  Sum_probs=120.7

Q ss_pred             CCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCC-eEEEEecC-------CcEEEEecCCCCCcceee
Q 013347          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCK-------GGICIWAPSYPGNAASVR  182 (444)
Q Consensus       111 g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~ll~~~~d-------g~v~iw~~~~~~~~~~~~  182 (444)
                      .++++++...|.+.++-+.. ++. ..++   ..+|.... .|..+ .++.-..|       ..|.+-++..++....+.
T Consensus        26 d~ll~~~~seG~vni~~l~g-~~~-vkLt---kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~   99 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDG-GET-VKLN---REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLE   99 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESS-SSC-EECC---SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECT
T ss_pred             CcEEEEEeccceEEEEEEeC-CEE-EEEe---cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEec
Confidence            34777777999999998885 333 3332   23333322 22211 12222221       345555555445544444


Q ss_pred             ccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeeecCC--CCeEEEE
Q 013347          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF--GGLSILK  260 (444)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~--~~v~~~~  260 (444)
                      +.                         ..-+|.++++. +.+..++|+..+ ...+|-++.++...+..-.  +-|+.+ 
T Consensus       100 sp-------------------------k~vRI~S~~yd-dk~vvF~Gased-~~~LYviegGklrkL~~vPpFsFVtDI-  151 (313)
T d2hu7a1         100 AV-------------------------KPMRILSGVDT-GEAVVFTGATED-RVALYALDGGGLRELARLPGFGFVSDI-  151 (313)
T ss_dssp             TS-------------------------CSBEEEEEEEC-SSCEEEEEECSS-CEEEEEEETTEEEEEEEESSCEEEEEE-
T ss_pred             CC-------------------------ceEEEEEeeec-CceEEEecccCC-ceEEEEEeCCceeeeccCCCcceEEec-
Confidence            33                         12456666663 344556666665 7999999988776654432  333333 


Q ss_pred             EecCCCeEEE----EecCCcEEEEECCCCceeccccCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcC
Q 013347          261 WSPTGDYFFA----AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  336 (444)
Q Consensus       261 ~sp~~~~l~~----~~~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                         .+++++-    ++.-..+.+=|+.++....+....+.++...+.+..+. ++....-+.-+-+.+ +..   ++...
T Consensus       152 ---~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~-D~~---s~~ye  223 (313)
T d2hu7a1         152 ---RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTV-DPR---DGSVE  223 (313)
T ss_dssp             ---ETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEE-CTT---TCCEE
T ss_pred             ---cCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEE-ecc---cCcee
Confidence               3455432    11122345556766776666667778888888887775 434333333333332 211   00011


Q ss_pred             CCCcccccccccCC--ceeEEEECCCCCEEEEEecCCCccccceEEEEEc
Q 013347          337 PVDLPDIVSLTGSQ--GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  384 (444)
Q Consensus       337 ~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~d~~~~~d~~i~vwd~  384 (444)
                      .++.+. +.+..-.  .|+-+-+.|++++++.+-.|      |.-++|.-
T Consensus       224 rve~P~-kd~~sy~p~~I~~~~Y~Pdd~L~iiakrd------G~s~lF~n  266 (313)
T d2hu7a1         224 DLELPS-KDFSSYRPTAITWLGYLPDGRLAVVARRE------GRSAVFID  266 (313)
T ss_dssp             ECCCSS-CHHHHHCCSEEEEEEECTTSCEEEEEEET------TEEEEEET
T ss_pred             eeecCc-ccceeecceEEEeeeeCCCCcEEEEEecC------Cchheeec
Confidence            111111 1111111  56667799999998888888      88888863

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.71  Score=39.58  Aligned_cols=177  Identities=10%  Similarity=-0.021  Sum_probs=101.7

Q ss_pred             cceEEEEEecCCCeEEEEECCCeEEEEEccCC---------CCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEE
Q 013347          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (444)
Q Consensus       100 ~~v~~~~~sp~g~~la~~~~dg~v~iw~~~~~---------~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw  170 (444)
                      ....-++.++..-+++.|+.++ +.|..+..-         +......  ..-..|..++|+.|   .+++..++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~--~~ip~v~~vafs~d---~l~v~~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE--KEIPDVIFVCFHGD---QVLVSTRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE--EECTTEEEEEEETT---EEEEEESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceec--cCCCCeEEEEeeCC---EEEEEeCCCEEEE
Confidence            3466789999888888877775 567664320         1111111  11236888999765   3555566777777


Q ss_pred             ecCCCCCcceeeccccccccccccCCCCceEEEEEeeccCCCceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCceeee
Q 013347          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIR  250 (444)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~~~  250 (444)
                      +...-.......                      .+    ...+..+.++|.  .++....++ .+.++++..++...+.
T Consensus       111 ~~~~l~~~~~~~----------------------~~----~~~~~~~~~~p~--~~~l~~~~~-~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_         111 DLEELSEFRTVT----------------------SF----EKPVFQLKNVNN--TLVILNSVN-DLSALDLRTKSTKQLA  161 (381)
T ss_dssp             ESSSTTCEEEEE----------------------EC----SSCEEEEEECSS--EEEEEETTS-EEEEEETTTCCEEEEE
T ss_pred             Eeeccccccccc----------------------cc----cccccceecCCc--eeEEEecCC-CEEEEEeccCcccccc
Confidence            776322211111                      11    256788888775  455556676 8999999888654432


Q ss_pred             c------CCCCeEEEEEecCCCeEEEEecCCcEEEE-ECCCCcee-ccccCCCceeEEEECCCCCEEEEE
Q 013347          251 R------GFGGLSILKWSPTGDYFFAAKFDGTFYLW-ETNTWTSE-PWSSTSGFVTGATWDPEGRMILLA  312 (444)
Q Consensus       251 ~------~~~~v~~~~~sp~~~~l~~~~~d~~v~iw-d~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~  312 (444)
                      .      -.+.+.+++|++.|..++++..++ ..+- ++...... ........+.++.|-.+..++++-
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            1      236678888888888777764322 2221 22211111 111234568899998777666543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.32  E-value=0.69  Score=39.16  Aligned_cols=192  Identities=12%  Similarity=0.120  Sum_probs=105.5

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEee----CCC--eEEEEec-C---CcEEEEecCCCCCc
Q 013347          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP----NGG--RSLSVGC-K---GGICIWAPSYPGNA  178 (444)
Q Consensus       109 p~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~----~~~--~ll~~~~-d---g~v~iw~~~~~~~~  178 (444)
                      |+..+++.....+-|.+||++  ++....+.   .+.+..+..-.    +++  .+++++. +   .+|.+|.+......
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~--G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE--GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT--CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cCccEEEEEcCcCCEEEEcCC--CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            445666666677779999997  55555442   34566655432    222  2444443 2   36778887632211


Q ss_pred             ce-eeccccccccccccCCCCceEEEEEeeccCCCceEEEEE--cc-CCCeEEEEeeCCCeEEEEEcCC---CCc----e
Q 013347          179 AS-VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GP-DGRYLASASYESSSFTIWDVAQ---GLG----T  247 (444)
Q Consensus       179 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~~~~l~~~~~d~~~i~iwd~~~---~~~----~  247 (444)
                      .. +.... .              .  ....  ...+..+++  ++ +|...+......+.+..|.+..   +..    .
T Consensus       113 l~~~~~~~-~--------------p--~~~~--~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lv  173 (353)
T d1h6la_         113 LQSITDPN-R--------------P--IASA--IDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKV  173 (353)
T ss_dssp             EEECSCSS-S--------------C--EECS--SSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEE
T ss_pred             cccccccc-c--------------c--cccc--cCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEee
Confidence            11 10000 0              0  0000  124555665  66 4555444444444898887743   221    2


Q ss_pred             eeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCC--ceec----cc--cCCCceeEEEEC--CCCC-EEEEEEcCC
Q 013347          248 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TSEP----WS--STSGFVTGATWD--PEGR-MILLAFAGS  316 (444)
Q Consensus       248 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~--~~~~----~~--~~~~~v~~~~~s--p~g~-~l~~~~~~~  316 (444)
                      +.......+..|.+....+.|+.+-++..|+.++....  ....    ..  .....+..++.-  .++. +|+++..++
T Consensus       174 r~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         174 RAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             eccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            23345678999999999899999988877777766422  1111    11  235567777753  3333 777777766


Q ss_pred             ceEEEEEe
Q 013347          317 LTLGSIHF  324 (444)
Q Consensus       317 ~~~~~~~~  324 (444)
                      .+..+++.
T Consensus       254 n~f~vydr  261 (353)
T d1h6la_         254 SSYAIYER  261 (353)
T ss_dssp             TEEEEEES
T ss_pred             CeEEEEec
Confidence            66555553

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.80  E-value=0.83  Score=37.36  Aligned_cols=179  Identities=14%  Similarity=0.192  Sum_probs=104.4

Q ss_pred             EEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEecCCCCCeEEEEEeeCCCeEEEEecCCcEEEEecCCCCCcceee
Q 013347          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (444)
Q Consensus       103 ~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~ll~~~~dg~v~iw~~~~~~~~~~~~  182 (444)
                      -+.-.+|..+.||.-+ ..++.|+|+++..+...   ......|.-=.|-.+  ..++--.+..|+-|+++....+..+.
T Consensus        66 dsAIMhP~~~IiALra-g~~LQiFnletK~klks---~~~~e~VvfWkWis~--~~L~lVT~taVYHW~~~g~s~P~k~f  139 (327)
T d1utca2          66 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA---HTMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQPVKMF  139 (327)
T ss_dssp             SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE---EECSSCCCEEEESSS--SEEEEECSSEEEEEESSSSCCCEEEE
T ss_pred             hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhce---EEcCCCcEEEEecCC--CEEEEEcCCceEEEcccCCCCchhhh
Confidence            3566789999888765 56899999997422222   234567777788766  35555567889999997544444443


Q ss_pred             cccccc----ccccccCCCCceEEEEEeeccCCCce-------------------EEEEEc---cCC-----CeEEEEee
Q 013347          183 SGAASF----LGALSRGPGTRWTLVDFLRSQNGEQI-------------------TALSWG---PDG-----RYLASASY  231 (444)
Q Consensus       183 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~s---p~~-----~~l~~~~~  231 (444)
                      ......    +-.+....+.+|..+.-+.... ..|                   .+.+|.   -+|     +.++.+..
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEET-TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCC-CceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            322221    2224556677777554332221 111                   112221   111     13333322


Q ss_pred             --CCCeEEEEEcCCCCc--ee-------ee-c---CCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCcee
Q 013347          232 --ESSSFTIWDVAQGLG--TP-------IR-R---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  288 (444)
Q Consensus       232 --d~~~i~iwd~~~~~~--~~-------~~-~---~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~  288 (444)
                        .++.+++.++.....  ..       +. .   ...-..++..++....+..-+.-|.+++||+.++.+.
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence              223677777765311  10       10 0   1234567888887778888888999999999999874

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.69  E-value=1.3  Score=39.05  Aligned_cols=52  Identities=13%  Similarity=0.299  Sum_probs=36.0

Q ss_pred             eEEEEEecCCCeEEEEECCCeEEEEEccCCCCceeEEe-------cCCCCCeEEEEEeeC
Q 013347          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-------SDSQRDVKVLEWRPN  154 (444)
Q Consensus       102 v~~~~~sp~g~~la~~~~dg~v~iw~~~~~~~~~~~~~-------~~~~~~v~~l~~s~~  154 (444)
                      -++|+|.|||+++++--.+|.|++++..+ +....+..       ..-......|+|+|+
T Consensus        29 P~~la~~pdg~llVter~~G~i~~v~~~~-g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          29 PHALLWGPDNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             ceEEEEeCCCeEEEEEecCCEEEEEECCC-CcEeecccCCccccccCCCCceeeEEeCCC
Confidence            68999999999888754579999888765 32222111       122356789999985

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.99  E-value=2.2  Score=38.87  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCCCceeEEEECCCCC-EEEE
Q 013347          235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGR-MILL  311 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~g~-~l~~  311 (444)
                      .|.-+|+.+++.+..........+-..+-.+.++++++.|+.++.+|.++++.....  +....-.-+.|..+|+ +|++
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEE
Confidence            577778888776654443322221112224667888999999999999999985322  2222222356666886 4444


Q ss_pred             E
Q 013347          312 A  312 (444)
Q Consensus       312 ~  312 (444)
                      .
T Consensus       525 ~  525 (571)
T d2ad6a1         525 M  525 (571)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.10  E-value=2.3  Score=36.30  Aligned_cols=137  Identities=8%  Similarity=-0.062  Sum_probs=82.8

Q ss_pred             CceEEEEEccCCCeEEEEeeCCCeEEEEEcCCCCcee-eecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceecc
Q 013347          212 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP-IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW  290 (444)
Q Consensus       212 ~~v~~~~~sp~~~~l~~~~~d~~~i~iwd~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~  290 (444)
                      ..|..++|+-+  .|+.. .++ .+..++...-.... ......++..+.++|.  .++....++.+.++++..++...+
T Consensus        87 p~v~~vafs~d--~l~v~-~~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVS-TRN-ALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TTEEEEEEETT--EEEEE-ESS-EEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCeEEEEeeCC--EEEEE-eCC-CEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc
Confidence            36888999754  45554 444 78888877644332 3334567888888774  466667789999999988765332


Q ss_pred             c------cCCCceeEEEECCCCCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccc-cCCceeEEEECCCCCE
Q 013347          291 S------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGER  363 (444)
Q Consensus       291 ~------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~  363 (444)
                      .      .-.+.+.+++|++.|..++++.+. .  ......-.           ....+.... .+..|.++.|-.+..+
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~-~--~q~k~~i~-----------~~~~~~~p~~~~~~v~sI~WL~~~~F  226 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG-E--MEKQFEFS-----------LPSELEELPVEEYSPLSVTILSPQDF  226 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCEEEEEEETT-E--EEEEEEEC-----------CCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred             cCCcceEEecCCceEEEEeCCcEEEEEeCCC-c--eeeccCCC-----------CccccCCCcCCCcceeEEEEecCceE
Confidence            2      123568889999999888876322 1  12221100           001111111 1226889999888777


Q ss_pred             EEEEe
Q 013347          364 LAVSY  368 (444)
Q Consensus       364 l~~~~  368 (444)
                      +++-+
T Consensus       227 ~vvy~  231 (381)
T d1xipa_         227 LAVFG  231 (381)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            76553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.93  E-value=2.6  Score=38.44  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccc--cCCCceeEEEECCCCC-EEEE
Q 013347          235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGR-MILL  311 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~sp~g~-~l~~  311 (444)
                      .|.-+|+.+++.........++..-..+-.+.++++|+.||.++.+|.++|+.....  .....-.-+.|..+|+ +|++
T Consensus       467 ~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i  546 (582)
T d1flga_         467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV  546 (582)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             eEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            677788888877765544333332223346778888999999999999999984322  1111112256777885 4554


Q ss_pred             EE
Q 013347          312 AF  313 (444)
Q Consensus       312 ~~  313 (444)
                      ..
T Consensus       547 ~a  548 (582)
T d1flga_         547 TV  548 (582)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=92.53  E-value=1.1  Score=40.97  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCce--eEEEECCCCC-EEEE
Q 013347          235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGR-MILL  311 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~v--~~~~~sp~g~-~l~~  311 (444)
                      .+.-||+.+++.+.......+...=..+-.+.++++|+.|+.++.+|.++|+..........+  .-+.|.-+|+ +|++
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v  537 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            466677777766654433322221112235778888999999999999999984322111111  1145556776 4454


Q ss_pred             EE
Q 013347          312 AF  313 (444)
Q Consensus       312 ~~  313 (444)
                      ..
T Consensus       538 ~~  539 (573)
T d1kb0a2         538 AV  539 (573)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.08  E-value=2.9  Score=35.13  Aligned_cols=150  Identities=14%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             cCCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEEEEEec----CCC--eEEEEec--C--CcEEEEECCC--Ccee
Q 013347          221 PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSP----TGD--YFFAAKF--D--GTFYLWETNT--WTSE  288 (444)
Q Consensus       221 p~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~~~~sp----~~~--~l~~~~~--d--~~v~iwd~~~--~~~~  288 (444)
                      |+..+++.....+ -|.+||+. |+.+.... .+.+..+..-.    .++  -++.++.  +  .+|.+|.+..  ....
T Consensus        38 p~~SlI~gTdK~~-Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKS-GLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTS-CCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcC-CEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            4455565555555 69999996 44444332 35666555432    222  3444442  2  3577787643  2222


Q ss_pred             ccc-------cCCCceeEEEE--CCC-CCEEEEEEcCCceEEEEEeecCCCCcCCCcCCCCcccccccccCCceeEEEEC
Q 013347          289 PWS-------STSGFVTGATW--DPE-GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD  358 (444)
Q Consensus       289 ~~~-------~~~~~v~~~~~--sp~-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  358 (444)
                      .+.       .....++.+++  ++. |...++....++.+..|.++.....      ......++++.....+..+++.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g------~v~~~lvr~f~~~~q~EGCVvD  188 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG------YISGKKVRAFKMNSQTEGMAAD  188 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS------SEEEEEEEEEECSSCEEEEEEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC------ceeeEeeeccCCCCccceEEEe
Confidence            222       11234677777  664 5666666777788888887543210      0123445566555578999999


Q ss_pred             CCCCEEEEEecCCCccccceEEEEEcC
Q 013347          359 ASGERLAVSYKGGDDIYKGLIAIYDAR  385 (444)
Q Consensus       359 pdg~~l~~~~~d~~~~~d~~i~vwd~~  385 (444)
                      +..+.|..+-++      .-|..++..
T Consensus       189 de~~~LyisEE~------~Giw~~~a~  209 (353)
T d1h6la_         189 DEYGSLYIAEED------EAIWKFSAE  209 (353)
T ss_dssp             TTTTEEEEEETT------TEEEEEESS
T ss_pred             CCCCcEEEecCc------cceEEEEec
Confidence            999999998776      445555544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.00  E-value=4.2  Score=36.80  Aligned_cols=78  Identities=12%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             eEEEEEcCCCCceeeecCCCCeEEEEEecCCCeEEEEecCCcEEEEECCCCceeccccCCCc--eeEEEECCCCC-EEEE
Q 013347          235 SFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF--VTGATWDPEGR-MILL  311 (444)
Q Consensus       235 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--v~~~~~sp~g~-~l~~  311 (444)
                      .+.-||+.+++.............-.+.-.+.++++|+.||.++.+|.++|+..........  -.-+.|.-+|+ +|++
T Consensus       439 ~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v  518 (560)
T d1kv9a2         439 ALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI  518 (560)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             ceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence            67778888887765444333332222233466788899999999999999998432211111  12245556775 4444


Q ss_pred             E
Q 013347          312 A  312 (444)
Q Consensus       312 ~  312 (444)
                      .
T Consensus       519 ~  519 (560)
T d1kv9a2         519 M  519 (560)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=4.4  Score=32.45  Aligned_cols=29  Identities=14%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCCCCe
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARRTPL  389 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~  389 (444)
                      ++++++.|+.+..... ..|.+||+.++.-
T Consensus       242 ~~~l~v~GG~~~~~~~-~~v~~yd~~~~~W  270 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFL-DSVECYDPDTDTW  270 (288)
T ss_dssp             TTEEEEECCBCSSCBC-CEEEEEETTTTEE
T ss_pred             CCEEEEEecCCCCeec-ceEEEEECCCCEE
Confidence            6788888776543222 4689999998653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.48  E-value=7.3  Score=33.95  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=22.6

Q ss_pred             CCeEEEEEeeCCCeEEEEec-CCcEEEEecCC
Q 013347          144 RDVKVLEWRPNGGRSLSVGC-KGGICIWAPSY  174 (444)
Q Consensus       144 ~~v~~l~~s~~~~~ll~~~~-dg~v~iw~~~~  174 (444)
                      ...++|+|.||+ .++++-. .|.|++++...
T Consensus        27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~   57 (450)
T d1crua_          27 NKPHALLWGPDN-QIWLTERATGKILRVNPES   57 (450)
T ss_dssp             SSEEEEEECTTS-CEEEEETTTCEEEEECTTT
T ss_pred             CCceEEEEeCCC-eEEEEEecCCEEEEEECCC
Confidence            467899999995 5555554 69999888663

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.93  E-value=3.6  Score=37.40  Aligned_cols=45  Identities=11%  Similarity=0.084  Sum_probs=31.8

Q ss_pred             CCCeEEEEeeCCCeEEEEEcCCCCceeeecCCCCeEE--EEEecCCCe
Q 013347          222 DGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI--LKWSPTGDY  267 (444)
Q Consensus       222 ~~~~l~~~~~d~~~i~iwd~~~~~~~~~~~~~~~v~~--~~~sp~~~~  267 (444)
                      .|.++++++.|+ .++.+|.++++.+........+..  +.|..+|++
T Consensus       487 agglVF~G~~dg-~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         487 AGNVVFQGTADG-RLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             TTTEEEEECTTS-EEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCCC-eEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            577888888998 999999999998865544332222  445557764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.42  E-value=15  Score=32.93  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             CCCEEEEEecCCCccccceEEEEEcCCCCeEEEEEeeeeeCCCCCCcceeeeeCCCC
Q 013347          360 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  416 (444)
Q Consensus       360 dg~~l~~~~~d~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~i~~v~~spdg~~  416 (444)
                      .+.++++++.|      +.++.+|.++|+.+-...   +.+ ...-.-+.|..||+.
T Consensus       474 agglVf~G~~d------g~l~A~Da~tGe~lW~~~---l~~-~~~a~P~ty~~dGkq  520 (571)
T d2ad6a1         474 KGGLVWYATLD------GYLKALDNKDGKELWNFK---MPS-GGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             TTTEEEEECTT------SEEEEEETTTCCEEEEEE---CSS-CCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCC------CeEEEEECCCCcEEEEEE---CCC-CceecceEEEECCEE
Confidence            45677778777      999999999999873222   121 222234677788864