Citrus Sinensis ID: 013356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
Protein Sequence
MLSTSSNRSDDVVDVDQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEEEcHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mlstssnrsddvvdvdqnsqpnlpiqqsksqslshrppplaeAEMAtrslsedspptpswftpkrLLVIFCVINMLnyvdrgaiasngvngsqrtcddkgictsgsgiqgdfklnnfqdgvlSSAFMVGLLVASPIFAslakshnpfrliGVGLSVWTFatagcgssfdFWSIAICRMLVGVGEasfislaapfiddnapvpqktAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIkplqlkgfapaesgkAQVVASVSegseasnlndhvsedisdqasERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGaysywgpkagyniyhmsnadmmFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Flexible Loop (DISEMBL)
mlstssnrsddvvdvdqnsqpnlpiqqsksqslshrpPPLAEAEMATRslsedspptpswftpKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEgseasnlndhvsedisdqaSERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Low Complexity Region (SEG)
MLSTSSNRSddvvdvdQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTgvalgyvyggvvgSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQvvasvsegseasNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFggvtivcgivgtisggFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Disordered region (IsUnstruct)
***********************************************************WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA*************************************************QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVI*
Disordered Region (DISOPRED)
*************************************************************TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Disordered Region (DISEMBL)
*************DVDQNSQPNLP*********************************PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVS*********RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Disordered Region (DISPRO)
**********************************************************SWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSTSSNRSDDVVDVDQNSQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQVIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	444	2.2.26 [Sep-21-2011]
F4IKF6	510	Probable sphingolipid tra	yes	no	0.916	0.798	0.624	1e-149
Q9FLG8	484	Probable sphingolipid tra	no	no	0.810	0.743	0.692	1e-148
Q6NMN6	492	Probable sphingolipid tra	no	no	0.844	0.762	0.583	1e-134
Q9GQQ0	605	Protein spinster OS=Droso	yes	no	0.695	0.510	0.268	2e-23
A8WGF7	526	Protein spinster homolog	yes	no	0.707	0.596	0.260	8e-22
Q5XGK0	526	Protein spinster homolog	N/A	no	0.709	0.598	0.269	1e-21
Q6ZMD2	512	Protein spinster homolog	yes	no	0.731	0.634	0.261	1e-18
A2SWM2	504	Protein spinster homolog	yes	no	0.682	0.601	0.255	3e-18
Q9D232	514	Protein spinster homolog	yes	no	0.774	0.669	0.256	3e-18
B0JZE1	513	Protein spinster homolog	no	no	0.826	0.715	0.248	4e-18

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score =  527 bits (1357), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/431 (62%), Positives = 323/431 (74%), Gaps = 24/431 (5%)

Query: 12  VVDVDQNSQPNLPIQQSKSQSLS-HRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIF 70
           +V  +++  P  P+ ++ S+  S     PLAE E   RSL  +   + S  +P  LLVIF
Sbjct: 1   MVTKEEDCLP--PVTETTSRCYSTSSSTPLAELE-TVRSL--EIVESSSSLSPVWLLVIF 55

Query: 71  CVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGL 130
           C+IN+LNY+DRGAIASNGVNGS R+C+DKG CT  +GIQG F L+NF+DGVLSS+FMVGL
Sbjct: 56  CIINLLNYMDRGAIASNGVNGSTRSCNDKGKCTLATGIQGHFNLSNFEDGVLSSSFMVGL 115

Query: 131 LVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL 190
           L+ASPIFASLAK     RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISL
Sbjct: 116 LIASPIFASLAK-----RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISL 170

Query: 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA 250
           AAPFIDDNAP  QK AWL +FYMCIP+GVALGYVYGG VG H +WRYAFWGEA+LM PFA
Sbjct: 171 AAPFIDDNAPQEQKAAWLGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFA 230

Query: 251 VLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGES 310
           VL F++KPLQLKG            +   + +    +++ +  D  + + E S  S   +
Sbjct: 231 VLGFLMKPLQLKG------------SETLKNNNRLQVDNEIEHDQFEVSIETSKSSYANA 278

Query: 311 RFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMF 370
            F    + F++D KVL +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F
Sbjct: 279 VF-KSFTGFAKDMKVLYKEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIF 337

Query: 371 GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALF 430
           G VTI+CGIVGT+SGGFILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF
Sbjct: 338 GAVTIICGIVGTLSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALF 397

Query: 431 TVGELLVFATQ 441
            +GELLVFATQ
Sbjct: 398 ALGELLVFATQ 408

Probable sphingolipid transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  523 bits (1348), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/390 (69%), Positives = 305/390 (78%), Gaps = 30/390 (7%)

Query: 52  EDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD 111
           +D    PSWFTPK+LL +FCV+N++NY+DRGAIASNG+NGS+ +C   G C+SGSGIQGD
Sbjct: 24  KDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCSSGSGIQGD 83

Query: 112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW 171
           F L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFW
Sbjct: 84  FNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFW 143

Query: 172 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS 231
           SI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPTG A GYVYGGVVGS
Sbjct: 144 SITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGS 203

Query: 232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV 291
            L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK +            NLN   
Sbjct: 204 VLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGKPR----------TDNLN--- 250

Query: 292 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSY 351
                       +  +G        S   +D K+LL +KVYV N+LGYIAYNFV+GAYSY
Sbjct: 251 ------------VLPVGYG-----FSAVMKDLKLLLVDKVYVTNILGYIAYNFVLGAYSY 293

Query: 352 WGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA 411
           WGPKAGYNIY M NADM+FGGVT+VCGIVGT+SGG ILD M ATISNAFK+LS +TF+GA
Sbjct: 294 WGPKAGYNIYKMENADMIFGGVTVVCGIVGTLSGGVILDYMDATISNAFKVLSVSTFIGA 353

Query: 412 ISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           I C  AFC  S+Y FLALF VGELLVFATQ
Sbjct: 354 IFCFAAFCFKSMYAFLALFAVGELLVFATQ 383

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score =  477 bits (1227), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/394 (58%), Positives = 291/394 (73%), Gaps = 19/394 (4%)

Query: 51  SEDSPPT--PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGI 108
            E++PP     + TP R + I C+IN++NYVDRG IASNGVNGS + CD KG+C++G+GI
Sbjct: 12  KEEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGI 71

Query: 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168
           QG+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S+
Sbjct: 72  QGEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSY 131

Query: 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228
           +FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP GVALGYV+GG 
Sbjct: 132 NFWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGY 191

Query: 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           +G+HL WR+AF+ EAI M  F +L+F IK P QLKGFA  +S K          ++A   
Sbjct: 192 IGNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPSTSIETVAPTDAE-- 249

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
                   + Q   ++ KS       N +  F +D K L  EKV++VNVLGYI YNFVIG
Sbjct: 250 --------ASQIKTKTPKS------KNLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIG 295

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAG+ IY M NADM+FGG+TI+CGI+GT+ G ++LD++ AT+SN FKLL+A+T
Sbjct: 296 AYSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAAST 355

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
            LGA  C TAF + ++Y F+ALF VGE+L+FA Q
Sbjct: 356 LLGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQ 389

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9GQQ0|SPIN_DROME Protein spinster OS=Drosophila melanogaster GN=spin PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 170/391 (43%), Gaps = 82/391 (20%)

Query: 60  WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQD 119
           WFT    + + C +N++NY+DR  IA              G+ T    ++ DF + N   
Sbjct: 114 WFT----VTVLCFVNLINYMDRFTIA--------------GVLTD---VRNDFDIGNDSA 152

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-WSIAICRM 178
           G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T        F W IA  R 
Sbjct: 153 GLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTLLGSFMKQFGWFIAF-RA 211

Query: 179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWR 236
           LVG+GEAS+ ++A   I D      ++  L++FY  IP G  LGY+ G    +HL  +WR
Sbjct: 212 LVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIVGSKT-AHLANDWR 270

Query: 237 YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS 296
           +A     IL +    L  +IK                 V   SEGS   NL         
Sbjct: 271 WALRVTPILGIVAVFLILLIK---------------DPVRGHSEGSH--NL--------- 304

Query: 297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA 356
                             + + + QD K L++ + ++++  G+    FV GA ++WGP  
Sbjct: 305 ------------------EATTYKQDIKALVRNRSFMLSTAGFTCVAFVAGALAWWGPSF 346

Query: 357 GYNIYHMS--NADMM-------FGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
            Y    M   N +++       FG +T++ G++G   G F+   +      A  ++ A  
Sbjct: 347 IYLGMKMQPGNENIVQDDVAFNFGVITMLAGLLGVPLGSFLSQYLVKRYPTADPVICAFG 406

Query: 408 FLGAISCLTAFCL---SSLYGFLALFTVGEL 435
            L +   LT  CL   S+  G  AL   G+L
Sbjct: 407 LLVSAPLLTGACLLVNSNSVGTYALIFFGQL 437

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage. Involved in TGF-beta-mediated synaptic growth regulation both pre- and postsynaptically via its function in endosomal storage regulation. Also required during oogenesis by regulating yolk spheres storage.

Drosophila melanogaster (taxid: 7227)

>sp|A8WGF7|SPNS1_XENTR Protein spinster homolog 1 OS=Xenopus tropicalis GN=spns1 PE=2 SV=2

 Score =  105 bits (262), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 167/391 (42%), Gaps = 77/391 (19%)

Query: 66  LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
           +++I   IN+LNY+DR  +A              G+    S I+ D+ +++   G++ + 
Sbjct: 61  IVIILFYINLLNYMDRFTVA--------------GVL---SDIKEDYHISDSNSGLVQTV 103

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVG 183
           F+   +  +P+F  L   +N   ++ +G+S W+  T  +   S   FW   + R LVGVG
Sbjct: 104 FICSYMFLAPVFGYLGDRYNRKLIMCIGISFWSLVTLLSSFVSKQYFWLFLLTRGLVGVG 163

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGE 242
           EAS+ ++A   I D     Q++  LS FY   P G  LGY+ G  V S   +W +A    
Sbjct: 164 EASYSTIAPTIIADLFLADQRSRMLSFFYFATPVGCGLGYIAGSKVTSTAGDWHWAL--- 220

Query: 243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER 302
                                         +V   +   +    +   V+++    A ER
Sbjct: 221 ------------------------------RVTPGLGLVAVLLLI--FVAKEPPRGALER 248

Query: 303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGY 358
                   R L   S FS D K LL+   ++++  G+    FV GA + WGP    ++  
Sbjct: 249 K-----SDRPLTNTSWFS-DVKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRR 302

Query: 359 NIYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 409
            IY        + N D  M+FGG+T V G++G ++G  I  +   T   A  L+ A   +
Sbjct: 303 VIYKTEPCQGGICNYDDSMIFGGITCVTGVLGVLTGVEISKRYRKTNPRADPLVCAVGMI 362

Query: 410 GAISCL---TAFCLSSLYGFLALFTVGELLV 437
            +   L    AF  +SL    A   +GE L+
Sbjct: 363 SSAPFLYLSLAFADTSLVATYAFIFIGETLL 393

Sphingolipid transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q5XGK0|SPNS1_XENLA Protein spinster homolog 1 OS=Xenopus laevis GN=spns1 PE=2 SV=1

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 166/390 (42%), Gaps = 75/390 (19%)

Query: 66  LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
           +++I   IN+LNY+DR  +A              G+      I+  F +++   G++ + 
Sbjct: 61  IVIILFYINLLNYMDRFTVA--------------GVLPD---IKKAFNISDSNSGLVQTV 103

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGSSFDFWSIAICRMLVGVG 183
           F+   +  +P+F  L   +N   ++ VG+S W+  T  +   S+  FW   I R LVGVG
Sbjct: 104 FICSYMFLAPVFGYLGDRYNRKLIMCVGISFWSLVTLLSSFVSNQYFWLFLITRGLVGVG 163

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243
           EAS+ ++A   I D     Q+T  LS FY   P G  LGY    +VGS +      W  A
Sbjct: 164 EASYSTIAPTIIADLFLADQRTRMLSFFYFATPVGCGLGY----IVGSEMTSAAGDWHWA 219

Query: 244 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS 303
           + + P   L  V+  +                               V+E+    A ER 
Sbjct: 220 LRVTPGLGLLAVLLLI------------------------------FVAEEPPRGALERK 249

Query: 304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP----KAGYN 359
                  R L   S +S D K LL+   ++++  G+    FV GA + WGP    ++   
Sbjct: 250 -----TDRPLTNTS-WSSDMKALLKNPSFILSTFGFTTVAFVTGALALWGPTYLMRSRMV 303

Query: 360 IYH-------MSNAD--MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLG 410
           IY        + N D  M+FGG+T + GI+G ++G  I  +   T   A  L+ A   + 
Sbjct: 304 IYKSKPCEGGICNYDDSMIFGGITCITGILGVLTGVEISKRYRKTNPRADPLVCAVGMIS 363

Query: 411 AISCL---TAFCLSSLYGFLALFTVGELLV 437
           +   L    AF  +SL        +GE L+
Sbjct: 364 SAPFLFLSLAFADTSLVATYVFIFIGETLL 393

Sphingolipid transporter.

Xenopus laevis (taxid: 8355)

>sp|Q6ZMD2|SPNS3_HUMAN Protein spinster homolog 3 OS=Homo sapiens GN=SPNS3 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 166/409 (40%), Gaps = 84/409 (20%)

Query: 55  PPTP-SW-FTPKRLLV---IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQ 109
           P TP SW   P R  V   + C IN+LNY++   IA   ++                 IQ
Sbjct: 31  PITPTSWSLPPWRAYVAAAVLCYINLLNYMNWFIIAGVLLD-----------------IQ 73

Query: 110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF- 168
             F++++   G+L + F+  LL+++P+F  L   H+    +  G+ +W+   AG  SSF 
Sbjct: 74  EVFQISDNHAGLLQTVFVSCLLLSAPVFGYLGDRHSRKATMSFGILLWS--GAGLSSSFI 131

Query: 169 ---DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225
                W   + R +VG G AS+ ++A   + D     Q+T  L++FY+ IP G  LGYV 
Sbjct: 132 SPRYSWLFFLSRGIVGTGSASYSTIAPTVLGDLFVRDQRTRVLAVFYIFIPVGSGLGYVL 191

Query: 226 GGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEA 284
           G  V     NWR+A                                    V    E    
Sbjct: 192 GSAVTMLTGNWRWAL----------------------------------RVMPCLEAVAL 217

Query: 285 SNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF 344
             L   V +     A  +   ++G  R     S + +D + L +   +V + LG  A  F
Sbjct: 218 ILLILLVPDPPRGAAETQGEGAVGGFR-----SSWCEDVRYLGKNWSFVWSTLGVTAMAF 272

Query: 345 VIGAYSYWGPK--AGYNIYH----------MSNAD-MMFGGVTIVCGIVGTISGGFILDQ 391
           V GA  +W PK      + H           SN D ++FG +TI+ G++G I G     +
Sbjct: 273 VTGALGFWAPKFLLEARVVHGLQPPCFQEPCSNPDSLIFGALTIMTGVIGVILGAEAARR 332

Query: 392 MGATISNAFKLLSAATFLGAISCL---TAFCLSSLYGFLALFTVGELLV 437
               I  A  L+ A++ L    CL        ++L        +GELL+
Sbjct: 333 YKKVIPGAEPLICASSLLATAPCLYLALVLAPTTLLASYVFLGLGELLL 381

Sphingolipid transporter.

Homo sapiens (taxid: 9606)

>sp|A2SWM2|SPNS2_DANRE Protein spinster homolog 2 OS=Danio rerio GN=spns2 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 154/388 (39%), Gaps = 85/388 (21%)

Query: 74  NMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVA 133
           N+LNY+DR  +A   ++                 IQ  FK+ +   G+L + F+   +VA
Sbjct: 65  NVLNYMDRYTVAGVLLD-----------------IQKQFKVGDSSAGLLQTVFICSFMVA 107

Query: 134 SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFIS 189
           +PIF  L    N   ++  G+  W+  T    SSF     +W + + R LVG+GE+S+ S
Sbjct: 108 APIFGYLGDRFNRKIILSCGIFFWSAVTLL--SSFITKEYYWLLVLSRCLVGIGESSYSS 165

Query: 190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV---VGSHLNWRYAFWGEAILM 246
           ++   I D     ++T  LS+FY+ IP G  LGY+ G +    G H  W +A     +L 
Sbjct: 166 ISPTIIGDLFTNNKRTVMLSVFYLAIPLGSGLGYILGSIAKDAGGH--WYWALRVSPMLG 223

Query: 247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS 306
           L    L  +                      VSE    S          +DQ   R    
Sbjct: 224 LTAGTLILIF---------------------VSEPKRGS----------ADQPGGR---- 248

Query: 307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK----------- 355
                 L   + +  D K L + + YV + L   A +F  GA+  W P+           
Sbjct: 249 ------LKTRTSWVCDMKALAKNRSYVFSSLASAAVSFATGAFGIWIPQYLVRAQVVQKS 302

Query: 356 AGYNIYH--MSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGA-- 411
           A    Y    S   ++FG +T V G++G + G             A  L+ A + LG+  
Sbjct: 303 AESCTYQPCSSRDSLIFGAITCVTGLLGVVIGAVTTRLCRQKTERADPLVCAVSMLGSAI 362

Query: 412 -ISCLTAFCLSSLYGFLALFTVGELLVF 438
            I  +      S+ G      +GE L+F
Sbjct: 363 FICLIFVVAKKSIVGAYICIFIGETLLF 390

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Danio rerio (taxid: 7955)

>sp|Q9D232|SPNS3_MOUSE Protein spinster homolog 3 OS=Mus musculus GN=Spns3 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 178/437 (40%), Gaps = 93/437 (21%)

Query: 29  KSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPK----RLLVIFCVINMLNYVDRGAI 84
           +SQSLS          +A+ +    S P P W  P+        + C IN+LNY++   I
Sbjct: 14  QSQSLSQGG---QYGALASGTCLPPSTPVP-WSLPRWRAYLAAAVLCYINLLNYMNWFII 69

Query: 85  ASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH 144
               ++                 +Q  F +++   G+L + F+  LLV++P+F  L   +
Sbjct: 70  PGVLLD-----------------VQKYFHISDSHAGLLQTVFISCLLVSAPVFGYLGDRY 112

Query: 145 NPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAP 200
           N   ++  G+ +W+   AG  SSF      W   + R  VG G AS+ ++A   + D   
Sbjct: 113 NRKAILSFGILLWS--GAGLSSSFISYQYSWLFFLSRGFVGTGAASYSTIAPTVLGDLFV 170

Query: 201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPL 259
             Q+T  L++FY+ IP G  LGYV G  V     NWR+     A+ ++P           
Sbjct: 171 KDQRTCALAVFYIFIPVGSGLGYVLGSTVAELTGNWRW-----ALRLMP----------- 214

Query: 260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF 319
                                 + A  L   +  D+   A+E+     GE       S +
Sbjct: 215 -------------------CLDAMALALLILLVPDVPRGAAEKQ----GEVAVRAPRSSW 251

Query: 320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY--NIYH-----------MSNA 366
            +D + L +   +V + LG  A  FV GA  +W PK  +   + H            S  
Sbjct: 252 CEDVRYLGRNWSFVFSTLGVTAIAFVTGALGFWAPKFLFEARVVHGLQLPCFQEQCHSQD 311

Query: 367 DMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL-TAFCLSSL-- 423
            ++FG +T+  GI+G + G     +       A  L+ A++      CL  A  L+S   
Sbjct: 312 SLIFGALTVATGIIGVMLGAEASRRYKKVNPRAEPLICASSLFATAPCLYLALILASRTL 371

Query: 424 ---YGFLALFTVGELLV 437
              Y FLAL   GELL+
Sbjct: 372 LASYVFLAL---GELLL 385

Sphingolipid transporter.

Mus musculus (taxid: 10090)

>sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2 OS=Xenopus tropicalis GN=spns2 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 178/459 (38%), Gaps = 92/459 (20%)

Query: 11  DVVDVDQNSQPNLPIQQSKS-QSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLV- 68
           D V    NSQ  +P  + +  ++L  R  P +    A    S  S P  + +  KR  V 
Sbjct: 6   DGVGTVSNSQGCIPGAEERGLETLPGRMNPTSLDVKAVELESSSSKPDKA-YNWKRASVA 64

Query: 69  ---IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
              I  V N+LNY+DR  +A   ++                 IQ  F++ +   G+L + 
Sbjct: 65  AAGILSVGNVLNYLDRYTVAGVLLD-----------------IQQHFEVKDSGAGLLQTV 107

Query: 126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVW---TFATAGCGSSFDFWSIAICRMLVGV 182
           F+   +VA+PIF  L    N   ++  G+  W   TF+++     + FW + + R LVG+
Sbjct: 108 FICSFMVAAPIFGYLGDRFNRKVILSSGIFFWSAITFSSSFIPKKY-FWLLVLSRGLVGI 166

Query: 183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWG 241
           GEAS+ ++A   I D      +T  LS+FY  IP G  LGY+ G  V     +WR+A   
Sbjct: 167 GEASYSTIAPTIIGDLFTKNTRTLMLSVFYFAIPLGSGLGYITGSSVKQVAGDWRWALRV 226

Query: 242 EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE 301
             +L +    L  +  P   +G A    G                               
Sbjct: 227 SPVLGVITGTLLLIFVPTAKRGHAEQLKG------------------------------- 255

Query: 302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY--- 358
                          S + +D + L++ + YV + L     +F  GA   W P   Y   
Sbjct: 256 ---------------SSWIRDMRGLIKNRSYVFSSLATSTVSFATGALGMWIPLYLYRAQ 300

Query: 359 ---------NIYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATF 408
                    NI   S  D ++FG +T + G +G I G             A  L+ A   
Sbjct: 301 VVQKSVEPCNIPPCSTKDSLIFGAITCLTGFLGVIIGAGATKWCRRKTQRADPLVCAVGM 360

Query: 409 LGA--ISCLTAFCLSS--LYGFLALFTVGELLVFATQVI 443
           LG+    CL      S  +  ++ +F  GE L+F+   I
Sbjct: 361 LGSAIFICLVFVAAKSSIIAAYICIFA-GETLLFSNWAI 398

Sphingolipid transporter required for migration of myocardial precursors. Transports sphingosine 1-phosphate (S1P), a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. Mediates the export of S1P from cells in the extraembryonic yolk syncytial layer (YSL), thereby regulating myocardial precursor migration.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
255576025	505	transporter, putative [Ricinus communis]	0.878	0.772	0.807	0.0
297735860	534	unnamed protein product [Vitis vinifera]	0.894	0.743	0.773	1e-177
359480514	510	PREDICTED: protein spinster homolog 1-li	0.873	0.760	0.785	1e-177
255554517	541	transporter, putative [Ricinus communis]	0.932	0.765	0.711	1e-170
357485271	497	Spinster-like protein [Medicago truncatu	0.855	0.764	0.731	1e-166
356531403	496	PREDICTED: protein spinster homolog 1-li	0.853	0.764	0.746	1e-164
356546730	532	PREDICTED: protein spinster homolog 1-li	0.923	0.770	0.682	1e-162
224105833	468	sugar transporter/spinster transmembrane	0.824	0.782	0.723	1e-162
356519493	530	PREDICTED: protein spinster homolog 1-li	0.918	0.769	0.688	1e-161
357164805	606	PREDICTED: protein spinster homolog 1-li	0.880	0.645	0.707	1e-159

>gi|255576025|ref|XP_002528908.1| transporter, putative [Ricinus communis] gi|223531662|gb|EEF33488.1| transporter, putative [Ricinus communis]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/394 (80%), Positives = 350/394 (88%), Gaps = 4/394 (1%)

Query: 48  RSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG 107
           R+ + DS   PSWFTPKRLL++FCVINM+NYVDRGAIASNGVNGS RTCD+KGIC SGSG
Sbjct: 3   RTSTNDSSSDPSWFTPKRLLMLFCVINMINYVDRGAIASNGVNGSIRTCDEKGICNSGSG 62

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           IQGDF LNNFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSS
Sbjct: 63  IQGDFNLNNFQDGVLSSAFMVGLLLASPIFASLAKSHNPFRLIGVGLSVWTFAAAGCGSS 122

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
           FDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIPTGVALGYVYGG
Sbjct: 123 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPAAQKTAWLATFYMCIPTGVALGYVYGG 182

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
            VGS+ NWRYAFWGEA+LMLPFAVL F +KPLQLKGFAPAES KA + +S+   + AS  
Sbjct: 183 FVGSNFNWRYAFWGEALLMLPFAVLGFAMKPLQLKGFAPAESKKA-LTSSIE--ANASIT 239

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
            D+ +EDIS +A + S K  GE   L+QLSQFS+D KVLL +KVYVVNVLGYI+YNFVIG
Sbjct: 240 EDNGNEDISSRAFKAS-KLKGEFTILHQLSQFSKDMKVLLVDKVYVVNVLGYISYNFVIG 298

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAGYNIYHMSNADMMFGGVTI+CGI+GT++GGFILD+M ATISNAFKLLS AT
Sbjct: 299 AYSYWGPKAGYNIYHMSNADMMFGGVTIICGILGTLAGGFILDRMNATISNAFKLLSGAT 358

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           FLGAI C +AFCL +LYGF+ LF+VGELLVFATQ
Sbjct: 359 FLGAIFCFSAFCLKNLYGFIILFSVGELLVFATQ 392

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735860|emb|CBI18614.3| unnamed protein product [Vitis vinifera]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 311/402 (77%), Positives = 343/402 (85%), Gaps = 5/402 (1%)

Query: 43  AEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGIC 102
           +EMA   +  D    PSWFTPKRLL+IFCVINMLNYVDRGAIASNGVNGS +TC + G+C
Sbjct: 23  SEMAKTPIG-DHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVC 81

Query: 103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA 162
           T GSGIQGDF L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATA
Sbjct: 82  TPGSGIQGDFNLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATA 141

Query: 163 GCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG 222
           GCGSSFDFWSIAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALG
Sbjct: 142 GCGSSFDFWSIAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALG 201

Query: 223 YVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS 282
           YVYGG VG H NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG 
Sbjct: 202 YVYGGFVGEHFNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGP 260

Query: 283 EASNLNDHV---SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY 339
             SN+N  V   +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY
Sbjct: 261 GLSNVNGGVLIRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGY 320

Query: 340 IAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNA 399
           ++YNFVIGAYSYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNA
Sbjct: 321 VSYNFVIGAYSYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNA 380

Query: 400 FKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           FKLLS ATFLGAI C  +FCL  LYGF+ALF+VGELLVFATQ
Sbjct: 381 FKLLSGATFLGAIFCFISFCLKGLYGFIALFSVGELLVFATQ 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480514|ref|XP_002273321.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 308/392 (78%), Positives = 338/392 (86%), Gaps = 4/392 (1%)

Query: 53  DSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF 112
           D    PSWFTPKRLL+IFCVINMLNYVDRGAIASNGVNGS +TC + G+CT GSGIQGDF
Sbjct: 8   DHASNPSWFTPKRLLIIFCVINMLNYVDRGAIASNGVNGSLKTCSESGVCTPGSGIQGDF 67

Query: 113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS 172
            L+NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLS WTFATAGCGSSFDFWS
Sbjct: 68  NLSNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSFWTFATAGCGSSFDFWS 127

Query: 173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH 232
           IAI RMLVGVGEASF+SLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG VG H
Sbjct: 128 IAIFRMLVGVGEASFVSLAAPFIDDNAPVTQKTAWLAMFYMCIPTGIALGYVYGGFVGEH 187

Query: 233 LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV- 291
            NWRYAFWGEAILMLPFAVL FV+KPLQLKGFAPAES K   V   +EG   SN+N  V 
Sbjct: 188 FNWRYAFWGEAILMLPFAVLGFVMKPLQLKGFAPAES-KNATVGPETEGPGLSNVNGGVL 246

Query: 292 --SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAY 349
             +E IS+ AS ++ KS G  +  NQ  +F  D K+LL +KVYVVNVLGY++YNFVIGAY
Sbjct: 247 IRNELISNNASNKASKSRGAFKMCNQFPRFLIDMKMLLLDKVYVVNVLGYVSYNFVIGAY 306

Query: 350 SYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFL 409
           SYWGPKAGYNIYHM+NADMMFGG+TIVCGI+GT++GG+ILD M ATISNAFKLLS ATFL
Sbjct: 307 SYWGPKAGYNIYHMNNADMMFGGITIVCGILGTLAGGYILDCMDATISNAFKLLSGATFL 366

Query: 410 GAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           GAI C  +FCL  LYGF+ALF+VGELLVFATQ
Sbjct: 367 GAIFCFISFCLKGLYGFIALFSVGELLVFATQ 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 301/423 (71%), Positives = 343/423 (81%), Gaps = 9/423 (2%)

Query: 26  QQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIA 85
           +Q K  S S  P P  +A+MA +  +  S P PSWFTP+RLLVIFC+IN++NYVDRGAIA
Sbjct: 8   KQVKPLSSSEEPNPSRDAQMA-KVPTPSSAPAPSWFTPRRLLVIFCIINLINYVDRGAIA 66

Query: 86  SNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145
           SNGVNG++RTC   G CTSGSGIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS N
Sbjct: 67  SNGVNGNRRTCTS-GTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSFN 125

Query: 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205
           PFRLIGVGLSVWT A  GCG S +FWSI ICRM VGVGEASFISLAAPFIDDNAPV QKT
Sbjct: 126 PFRLIGVGLSVWTLAVVGCGFSINFWSITICRMFVGVGEASFISLAAPFIDDNAPVAQKT 185

Query: 206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
           AWL++FYMCIP+G A GYVYGG+VG H NWR+AFWGEAILMLPF VL F++KPLQLKGFA
Sbjct: 186 AWLAIFYMCIPSGYAFGYVYGGLVGDHANWRWAFWGEAILMLPFVVLGFLMKPLQLKGFA 245

Query: 266 PAESGKA--QVVASVS-----EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ 318
           PAES KA   V  +VS     E S     N  V E+++D++ + S  S   +  LNQ S+
Sbjct: 246 PAESKKALTSVETAVSEVQDTETSAGKGENLSVKEELNDKSPKPSCMSRYATFSLNQFSR 305

Query: 319 FSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCG 378
           F +D K LL EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY+M+NADM+FGG+TIVCG
Sbjct: 306 FIKDMKALLVEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYNMTNADMIFGGITIVCG 365

Query: 379 IVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVF 438
           I+GT++GG+ILD M +TI NAFKLLS ATFLGAI C +AFC  S+Y FLALF +GELLVF
Sbjct: 366 ILGTMAGGYILDYMTSTIPNAFKLLSVATFLGAIFCFSAFCFKSMYVFLALFAIGELLVF 425

Query: 439 ATQ 441
           ATQ
Sbjct: 426 ATQ 428

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485271|ref|XP_003612923.1| Spinster-like protein [Medicago truncatula] gi|355514258|gb|AES95881.1| Spinster-like protein [Medicago truncatula]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 283/387 (73%), Positives = 326/387 (84%), Gaps = 7/387 (1%)

Query: 55  PPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL 114
           PP PSWFTPKRLL+IFC+IN++NYVDRGAIASNGVNG+  TC + G+CT+G+GIQGDF L
Sbjct: 8   PPNPSWFTPKRLLIIFCIINLINYVDRGAIASNGVNGTLETCTESGVCTAGTGIQGDFNL 67

Query: 115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA 174
           +NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWTFA AGCGSSFDFWSIA
Sbjct: 68  SNFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTFAVAGCGSSFDFWSIA 127

Query: 175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN 234
           ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+ FYMCIP G ALGYVYGG+VGS  N
Sbjct: 128 ICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLATFYMCIPAGTALGYVYGGLVGSQFN 187

Query: 235 WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED 294
           WR AFWGEAI MLPF +L F+IKPLQLKGF P ES + +   + +E + + N +D +  +
Sbjct: 188 WRVAFWGEAIFMLPFPILGFLIKPLQLKGFGPMESKQTR---TSNETNVSENGDDGILAE 244

Query: 295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP 354
             DQA  R  K    S+  NQ ++F  D + LL E+VYV+NVLGYIAYNFVIGAYSYWGP
Sbjct: 245 --DQAFIRGSKL--TSKLGNQFTRFLNDMQELLHERVYVINVLGYIAYNFVIGAYSYWGP 300

Query: 355 KAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414
           KAGY+IYHMSNAD++FGG+TIVCGI GT++GG ILD+M +TISNAFK+LS ATFLGAI C
Sbjct: 301 KAGYSIYHMSNADLLFGGITIVCGIFGTLAGGLILDKMSSTISNAFKILSGATFLGAIFC 360

Query: 415 LTAFCLSSLYGFLALFTVGELLVFATQ 441
           L AF    L+GF+ LF+VGELL+FATQ
Sbjct: 361 LVAFLFKGLFGFIILFSVGELLIFATQ 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531403|ref|XP_003534267.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 288/386 (74%), Positives = 323/386 (83%), Gaps = 7/386 (1%)

Query: 56  PTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLN 115
           P PSWFTPKRLL+IFC+INMLNYVDRGAIASNGVNGS  TC D GICT GSGIQGDF LN
Sbjct: 9   PNPSWFTPKRLLMIFCLINMLNYVDRGAIASNGVNGSLATCTDSGICTGGSGIQGDFNLN 68

Query: 116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI 175
           NFQDGVLSSAFMVGLL+ASPIFASLAKSHNPFRLIGVGLSVWT A AGCGSSFDFWSIAI
Sbjct: 69  NFQDGVLSSAFMVGLLIASPIFASLAKSHNPFRLIGVGLSVWTLAIAGCGSSFDFWSIAI 128

Query: 176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW 235
           CRMLVGVGEASFISLAAPFIDDNAP  QKTAWL+ FYMCIP G ALGYVYGG+VGS  NW
Sbjct: 129 CRMLVGVGEASFISLAAPFIDDNAPDAQKTAWLATFYMCIPAGTALGYVYGGIVGSQFNW 188

Query: 236 RYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI 295
           R AFW EAILMLPF +L FVIKPLQLKGFAP ES K  +  + +  SE  + +D ++E  
Sbjct: 189 RVAFWVEAILMLPFPILGFVIKPLQLKGFAPLES-KQTLTYTETNVSETGD-DDTLAE-- 244

Query: 296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK 355
            DQA  +  KS   S+  NQ + FS+D + LL ++VYV+NVLGYIAYNFVIGAYSYWGPK
Sbjct: 245 -DQALLKGSKS--TSKLWNQFTIFSKDMQELLHDQVYVINVLGYIAYNFVIGAYSYWGPK 301

Query: 356 AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL 415
           AGY+IYHM+NAD++FGG+TIVCGIVGT++GG  LD++ +TISNAFKLLS ATFLGAI CL
Sbjct: 302 AGYSIYHMNNADLLFGGITIVCGIVGTLAGGLFLDRISSTISNAFKLLSGATFLGAIFCL 361

Query: 416 TAFCLSSLYGFLALFTVGELLVFATQ 441
            AF   SL GF+  F++GELL+F TQ
Sbjct: 362 IAFLFKSLSGFIVFFSMGELLIFVTQ 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/422 (68%), Positives = 332/422 (78%), Gaps = 12/422 (2%)

Query: 26  QQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIA 85
           Q   SQ      P L E  ++T        PT SWFTPKRLL IFCVIN+LNYVDRGAIA
Sbjct: 3   QDDHSQVKPKPSPQLVEPRISTMI------PTASWFTPKRLLAIFCVINLLNYVDRGAIA 56

Query: 86  SNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN 145
           SNGVNGS+ TC + G CTSGSGIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS N
Sbjct: 57  SNGVNGSKGTCTEGGTCTSGSGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVN 116

Query: 146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT 205
           PFRLIGVGLSVWT AT  CG SF+FWSI+ICRMLVGVGEASFISLAAPFIDDNAPV QKT
Sbjct: 117 PFRLIGVGLSVWTLATLCCGFSFNFWSISICRMLVGVGEASFISLAAPFIDDNAPVTQKT 176

Query: 206 AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA 265
           AWL++FYMCIP+G ALGYVYGG+VGSHL WRYAFW E++ M+PFA+    +KPLQL+GF 
Sbjct: 177 AWLAIFYMCIPSGYALGYVYGGLVGSHLGWRYAFWVESLFMVPFAISGLFMKPLQLRGFV 236

Query: 266 PAESGKA---QVVASVSEGSEASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQF 319
           PA+S K    + VAS  +  EASN  D    +  ++ D++S    KS   ++   + S+F
Sbjct: 237 PADSKKTLTPETVASGVQVMEASNGKDEPLSLKAELRDKSSNDHSKSKSVTQIFEKFSRF 296

Query: 320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGI 379
             D K LL +KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHM++AD++FGG+TIVCGI
Sbjct: 297 LNDMKELLLDKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMTDADLIFGGITIVCGI 356

Query: 380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFA 439
           VGT++GGF+LD M  T+SNAFKLLS  TF+GA  C  AF   S+YGFLALF++GELLVFA
Sbjct: 357 VGTLAGGFVLDYMSNTLSNAFKLLSITTFIGAAFCFGAFLFRSMYGFLALFSIGELLVFA 416

Query: 440 TQ 441
           TQ
Sbjct: 417 TQ 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105833|ref|XP_002313948.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa] gi|222850356|gb|EEE87903.1| sugar transporter/spinster transmembrane protein [Populus trichocarpa]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/394 (72%), Positives = 318/394 (80%), Gaps = 28/394 (7%)

Query: 48  RSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSG 107
           RS +  SPP PSWFTPKRLLVIFCVIN++NYVDRGAIASNGVNGS+RTC   G CT GSG
Sbjct: 3   RSSTALSPPAPSWFTPKRLLVIFCVINLINYVDRGAIASNGVNGSRRTCSKSGTCTFGSG 62

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           IQGDF L+NF+DGVLSSAFMVGLLVA PIFASLAKS NPFRLIGVGLSVWT A  GCG S
Sbjct: 63  IQGDFNLSNFEDGVLSSAFMVGLLVACPIFASLAKSVNPFRLIGVGLSVWTVAVVGCGFS 122

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
           F+FW+I ICRMLVGVGEASFISLAAPFIDDNAPV +KT WL +FYMCIPTG ALGYVYGG
Sbjct: 123 FNFWTITICRMLVGVGEASFISLAAPFIDDNAPVAKKTLWLGIFYMCIPTGYALGYVYGG 182

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNL 287
           ++G H NWR+AF+GEAILMLPFAVL FV+KPLQLKGFAPAES KA               
Sbjct: 183 LIGGHFNWRFAFYGEAILMLPFAVLGFVMKPLQLKGFAPAESKKAL-------------- 228

Query: 288 NDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG 347
                      + E ++  +  ++F    S+F  D KVLL EKVYVVNVLGYIAYNFVIG
Sbjct: 229 ----------TSIETAVLEVQGAQF----SRFMIDVKVLLLEKVYVVNVLGYIAYNFVIG 274

Query: 348 AYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT 407
           AYSYWGPKAGYNIY+MSNADM+FGGVTIVCGIVGTI GG++LD + +TISNAFKLLSA T
Sbjct: 275 AYSYWGPKAGYNIYNMSNADMIFGGVTIVCGIVGTIGGGYVLDLINSTISNAFKLLSAVT 334

Query: 408 FLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           F+GAI C +AFC  ++Y FLA F +GELLVFATQ
Sbjct: 335 FVGAIFCFSAFCFKNMYAFLAFFAIGELLVFATQ 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 289/420 (68%), Positives = 334/420 (79%), Gaps = 12/420 (2%)

Query: 28  SKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASN 87
           ++ Q    +P    E +M T S      P+ SWFTPKRLL IFCVIN+LNY+DRGAIASN
Sbjct: 2   AQQQEHEGKPESSLEPDMGTNS---TMIPSTSWFTPKRLLAIFCVINLLNYLDRGAIASN 58

Query: 88  GVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF 147
           GVNGSQRTC+  G C SG+GIQGDF LNNF+DGVLSSAFMVGLLVASPIFASLAKS NPF
Sbjct: 59  GVNGSQRTCEG-GTCKSGTGIQGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKSVNPF 117

Query: 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW 207
           RLIGVGLSVWT AT  CG SF+FWSIA+CRMLVGVGEASFISLAAPFIDDNAPV QKTAW
Sbjct: 118 RLIGVGLSVWTLATLCCGFSFNFWSIAVCRMLVGVGEASFISLAAPFIDDNAPVSQKTAW 177

Query: 208 LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA 267
           L++FYMCIP G A+GY+YGG+VG+H  WRY FW EAILM PFA+L FV+KPLQLKGFAP 
Sbjct: 178 LAIFYMCIPAGYAIGYIYGGLVGNHFGWRYGFWVEAILMSPFAILGFVMKPLQLKGFAPT 237

Query: 268 ESGKAQVVASV-SEGSE--ASNLNDH---VSEDISDQASERSIKSIGESRFLNQLSQFSQ 321
           +S KA  + +V SE S+  ASN  D    +  +  D++S    +S  +   L+Q S+F +
Sbjct: 238 DSEKALTLGTVASEVSDVGASNGKDEALSLKAEFRDKSSHEPSRS--KCTILDQFSRFLK 295

Query: 322 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVG 381
           D K LL +KV+VVNVLGYIAYNFVIGAYSYWGPKAGY+IY+M+NADMMFGG+T+VCGI+G
Sbjct: 296 DMKELLLDKVFVVNVLGYIAYNFVIGAYSYWGPKAGYSIYNMTNADMMFGGITVVCGILG 355

Query: 382 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           T++GGF+LD M  TISNAFKLLS ATF+G   C  AF   S YGFLALF VGELLVFATQ
Sbjct: 356 TVAGGFVLDFMTNTISNAFKLLSIATFIGGACCFGAFLFKSQYGFLALFAVGELLVFATQ 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164805|ref|XP_003580172.1| PREDICTED: protein spinster homolog 1-like [Brachypodium distachyon]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/400 (70%), Positives = 324/400 (81%), Gaps = 9/400 (2%)

Query: 49  SLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGI 108
           S S  +   PSWFTPKRLLV+FC+INMLNYVDRG IASNGVNGS+ +C   G CTSGSGI
Sbjct: 100 STSGSAEEKPSWFTPKRLLVMFCIINMLNYVDRGVIASNGVNGSRGSCSG-GTCTSGSGI 158

Query: 109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF 168
           QGDF LNNF+DGVLSSAFMVGLLVASPIFASLAK HNPFRLIGVGL VWT ATAGCG SF
Sbjct: 159 QGDFNLNNFEDGVLSSAFMVGLLVASPIFASLAKIHNPFRLIGVGLLVWTIATAGCGCSF 218

Query: 169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV 228
           DFWSI ICRMLVGVGEASFISLAAPFIDDNAPV QKTAWL+MFYMCIPTG+ALGYVYGG+
Sbjct: 219 DFWSITICRMLVGVGEASFISLAAPFIDDNAPVAQKTAWLAMFYMCIPTGIALGYVYGGL 278

Query: 229 VGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLN 288
           VG  L+WR AFWGE+ILMLPF +L FVIKPL+LKGF   +  K        E  + +N N
Sbjct: 279 VGKRLHWRAAFWGESILMLPFVILGFVIKPLELKGFTHNKKTKEYGPMLNPELRDETNNN 338

Query: 289 D------HVSEDISDQASER-SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA 341
                    +E ++++  +R S  S G+ + + ++  F QD K LLQEKVYV+NVLGYIA
Sbjct: 339 GIKQGVPAGTEGLTEKIPQRFSFSSFGK-KVMIEIGHFGQDMKELLQEKVYVINVLGYIA 397

Query: 342 YNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFK 401
           YNFVIGAYSYWGPKAG +IY M++AD+MFGG+TIVCGI GT++GGFILD++ +TISNAFK
Sbjct: 398 YNFVIGAYSYWGPKAGQDIYKMASADLMFGGITIVCGIFGTLAGGFILDKIESTISNAFK 457

Query: 402 LLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           LLS ATFLGAI C +AFC  SLYGF+  F+VGELLVFATQ
Sbjct: 458 LLSGATFLGAIFCFSAFCFKSLYGFIPFFSVGELLVFATQ 497

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	444
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.495	0.454	0.731	1.1e-127
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.894	0.778	0.582	1.3e-118
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.842	0.760	0.536	2.1e-107
FB|FBgn0086676	605	spin "spinster" [Drosophila me	0.331	0.242	0.305	1.3e-16
RGD|1305613	528	Spns1 "spinster homolog 1 (Dro	0.297	0.25	0.322	4.7e-14
ZFIN|ZDB-GENE-060531-7	500	spns3 "spinster homolog 3 (Dro	0.457	0.406	0.282	5.3e-14
MGI|MGI:1920908	528	Spns1 "spinster homolog 1" [Mu	0.297	0.25	0.322	9.6e-14
UNIPROTKB|Q9H2V7	528	SPNS1 "Protein spinster homolo	0.297	0.25	0.309	4e-13
UNIPROTKB|H3BR82	538	SPNS1 "Protein spinster homolo	0.297	0.245	0.309	4.2e-13
UNIPROTKB|H3BMF4	573	SPNS1 "Spinster, isoform CRA_a	0.297	0.230	0.309	5.3e-13

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 1.1e-127, Sum P(2) = 1.1e-127
 Identities = 161/220 (73%), Positives = 181/220 (82%)

Query:    52 EDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD 111
             +D    PSWFTPK+LL +FCV+N++NY+DRGAIASNG+NGS+ +C   G C+SGSGIQGD
Sbjct:    24 KDPISEPSWFTPKKLLFVFCVVNLINYIDRGAIASNGINGSRGSCTSSGTCSSGSGIQGD 83

Query:   112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW 171
             F L+NF+DGVLSSAFMVGLLVASPIFASLAKS NPFRLIGVGLS+WT A  GCG SFDFW
Sbjct:    84 FNLSNFEDGVLSSAFMVGLLVASPIFASLAKSVNPFRLIGVGLSIWTLAVIGCGLSFDFW 143

Query:   172 SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXS 231
             SI ICRM VGVGEASF+SLAAPFIDDNAP  QK+AWL++FYMCIPT             S
Sbjct:   144 SITICRMFVGVGEASFVSLAAPFIDDNAPHDQKSAWLAVFYMCIPTGYAFGYVYGGVVGS 203

Query:   232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK 271
              L WR AFWGEAILMLPFAVL FVIKPL LKGFAP ++GK
Sbjct:   204 VLPWRAAFWGEAILMLPFAVLGFVIKPLHLKGFAPDDTGK 243

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 244/419 (58%), Positives = 291/419 (69%)

Query:    24 PIQQSKSQSLS-HRPPPLAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRG 82
             P+ ++ S+  S     PLAE E   RSL  +   + S  +P  LLVIFC+IN+LNY+DRG
Sbjct:    11 PVTETTSRCYSTSSSTPLAELE-TVRSL--EIVESSSSLSPVWLLVIFCIINLLNYMDRG 67

Query:    83 AIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK 142
             AIASNGVNGS R+C+DKG CT  +GIQG F L+NF+DGVLSS+FMVGLL+ASPIFASLAK
Sbjct:    68 AIASNGVNGSTRSCNDKGKCTLATGIQGHFNLSNFEDGVLSSSFMVGLLIASPIFASLAK 127

Query:   143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP 202
                  RLIGVGL+VWT A  GCGSSF FW I +CRM VGVGEASFISLAAPFIDDNAP  
Sbjct:   128 -----RLIGVGLTVWTIAVLGCGSSFAFWFIVLCRMFVGVGEASFISLAAPFIDDNAPQE 182

Query:   203 QKTAWLSMFYMCIPTXXXXXXXXXXXXXSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK 262
             QK AWL +FYMCIP+              H +WRYAFWGEA+LM PFAVL F++KPLQLK
Sbjct:   183 QKAAWLGLFYMCIPSGVALGYVYGGYVGKHFSWRYAFWGEAVLMAPFAVLGFLMKPLQLK 242

Query:   263 GFAPAESGKAQXXXXXXXXXXXXNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD 322
             G   +E+ K               +++ +  D  + + E S  S   + F    + F++D
Sbjct:   243 G---SETLKNNNRL---------QVDNEIEHDQFEVSIETSKSSYANAVF-KSFTGFAKD 289

Query:   323 TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXX 382
              KVL +EKV+VVNVLGY++YNFVIGAYSYWGPKAGYNIY M NADM+F            
Sbjct:   290 MKVLYKEKVFVVNVLGYVSYNFVIGAYSYWGPKAGYNIYKMKNADMIFGAVTIICGIVGT 349

Query:   383 XXXXFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
                 FILD++ ATI NAFKLLS ATFLGA+ C TAF L SLYGF+ALF +GELLVFATQ
Sbjct:   350 LSGGFILDRVTATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQ 408

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 211/393 (53%), Positives = 268/393 (68%)

Query:    52 EDSPPTPS--WFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQ 109
             E++PP     + TP R + I C+IN++NYVDRG IASNGVNGS + CD KG+C++G+GIQ
Sbjct:    13 EEAPPATKKRFLTPGRFVTILCIINLINYVDRGVIASNGVNGSSKVCDAKGVCSAGTGIQ 72

Query:   110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD 169
             G+F L NF+DG+LSSAFMVGLLVASPIFA L+K  NPF+LIGVGL+VWT A  GCG S++
Sbjct:    73 GEFNLTNFEDGLLSSAFMVGLLVASPIFAGLSKRFNPFKLIGVGLTVWTIAVIGCGFSYN 132

Query:   170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXX 229
             FW IA+ RM VGVGEASFISLAAP+IDD+APV +K  WL +FYMCIP             
Sbjct:   133 FWMIAVFRMFVGVGEASFISLAAPYIDDSAPVARKNFWLGLFYMCIPAGVALGYVFGGYI 192

Query:   230 XSHLNWRYAFWGEAILMLPFAVLAFVIKP-LQLKGFAPAESGKAQXXXXXXXXXXXXNLN 288
              +HL WR+AF+ EAI M  F +L+F IKP  QLKGFA  +S K              ++ 
Sbjct:   193 GNHLGWRWAFYIEAIAMAVFVILSFCIKPPQQLKGFADKDSKKPST-----------SIE 241

Query:   289 DHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA 348
                  D   +AS+   K+  +S+  N +  F +D K L  EKV++VNVLGYI YNFVIGA
Sbjct:   242 TVAPTDA--EASQIKTKT-PKSK--NLVVLFGKDLKALFSEKVFIVNVLGYITYNFVIGA 296

Query:   349 YSYWGPKAGYNIYHMSNADMMFXXXXXXXXXXXXXXXXFILDQMGATISNAFKLLSAATF 408
             YSYWGPKAG+ IY M NADM+F                ++LD++ AT+SN FKLL+A+T 
Sbjct:   297 YSYWGPKAGFGIYKMKNADMIFGGLTIICGIIGTLGGSYVLDRINATLSNTFKLLAASTL 356

Query:   409 LGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
             LGA  C TAF + ++Y F+ALF VGE+L+FA Q
Sbjct:   357 LGAAFCFTAFLMKNMYAFIALFAVGEILIFAPQ 389

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0086676 spin "spinster" [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
 Identities = 47/154 (30%), Positives = 76/154 (49%)

Query:   108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
             ++ DF + N   G+L + F++  +V +PIF  L   ++   ++ VG+ +W+  T   GS 
Sbjct:   141 VRNDFDIGNDSAGLLQTVFVISYMVCAPIFGYLGDRYSRPWIMAVGVGLWSTTTL-LGSF 199

Query:   168 F-DF-WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTXXXXXXXX 225
                F W IA  R LVG+GEAS+ ++A   I D      ++  L++FY  IP         
Sbjct:   200 MKQFGWFIAF-RALVGIGEASYSTIAPTIISDLFVHDMRSKMLALFYFAIPVGSGLGYIV 258

Query:   226 XXXXXSHL--NWRYAFWGEAILMLPFAVLAFVIK 257
                  +HL  +WR+A     IL +    L  +IK
Sbjct:   259 GSKT-AHLANDWRWALRVTPILGIVAVFLILLIK 291

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0045924 "regulation of female receptivity" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0045477 "regulation of nurse cell apoptotic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0048488 "synaptic vesicle endocytosis" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0007040 "lysosome organization" evidence=IMP

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090099 "negative regulation of decapentaplegic signaling pathway" evidence=IGI

RGD|1305613 Spns1 "spinster homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
 Identities = 50/155 (32%), Positives = 80/155 (51%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++V+ C IN+LNY+DR  +A              G+ T    I+  F + +   G++ + 
Sbjct:    61 IVVVLCYINLLNYMDRFTVA--------------GVLTD---IEQFFNIGDGSTGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-060531-7 spns3 "spinster homolog 3 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
 Identities = 68/241 (28%), Positives = 105/241 (43%)

Query:    35 HRPPPLAEAEMATR----SLSEDSP---P-TPSW--FTPKRLLV---IFCVINMLNYVDR 81
             HRP P      +T     S+S + P   P TP     + +R  +   + C IN+LNY+DR
Sbjct:     6 HRPKPRLSLRSSTTIRYGSMSSEHPDGDPSTPQTTSISQRRSYIAVAVLCYINLLNYMDR 65

Query:    82 GAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA 141
               IA              G+      IQ  F +++   G+L + F+   +  +P+F  L 
Sbjct:    66 YTIA--------------GVLLR---IQKFFFISDSTSGLLQTVFICSFMFLAPVFGYLG 108

Query:   142 KSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDD 197
               ++   ++ VGL +W   T G  SSF     FW +   R LVG GEAS+ ++A   I D
Sbjct:   109 DRYDRKLIMIVGLVMWIVTTLG--SSFVRKSHFWVLVATRALVGTGEASYSTIAPTIIGD 166

Query:   198 NAPVPQKTAWLSMFYMCIPTXXXXXXXXXXXXXSHL-NWRYAFW-GEAILMLPFAVLAFV 255
                  ++T  +S FY+ IP                  +WR+A     A+  L   +L F+
Sbjct:   167 LFAGSKRTLMISFFYIFIPVGSGLGYIIGATVADATGDWRWALRVSPALGGLGLLLLVFL 226

Query:   256 I 256
             I
Sbjct:   227 I 227

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

MGI|MGI:1920908 Spns1 "spinster homolog 1" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
 Identities = 50/155 (32%), Positives = 80/155 (51%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++V+ C IN+LNY+DR  +A              G+ T    I+  F + +   G++ + 
Sbjct:    61 IVVVLCYINLLNYMDRFTVA--------------GVLTD---IEQFFNIGDGSTGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPREHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q9H2V7 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:    61 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFNIGDSSSGLIQTV 103

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   104 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVG 161

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   162 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 196

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|H3BR82 SPNS1 "Protein spinster homolog 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:    50 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFNIGDSSSGLIQTV 92

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:    93 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVG 150

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   151 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 185

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|H3BMF4 SPNS1 "Spinster, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 5.3e-13, Sum P(2) = 5.3e-13
 Identities = 48/155 (30%), Positives = 78/155 (50%)

Query:    66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSA 125
             ++ + C IN+LNY+DR  +A              G+      I+  F + +   G++ + 
Sbjct:   106 IVAVLCYINLLNYMDRFTVA--------------GVLPD---IEQFFNIGDSSSGLIQTV 148

Query:   126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVG 181
             F+   +V +P+F  L   +N   L+  G++ W+  T G  SSF     FW + + R LVG
Sbjct:   149 FISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLG--SSFIPGEHFWLLLLTRGLVG 206

Query:   182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP 216
             VGEAS+ ++A   I D     Q++  LS+FY  IP
Sbjct:   207 VGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIP 241

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IKF6	SPNS3_ARATH	No assigned EC number	0.6241	0.9166	0.7980	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrOATP2 sugar transporter/spinster transmembrane protein (468 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	444
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-19
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-16
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-12
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-09
pfam03137	582	pfam03137, OATP, Organic Anion Transporter Polypep	3e-08
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-06
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	2e-04
PRK03545	390	PRK03545, PRK03545, putative arabinose transporter	0.001
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	0.003

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 17/193 (8%)

Query: 67  LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAF 126
           L++  +   L+ +DRG ++                      +  D  L+  Q G++ SAF
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPL-----------------LAEDLGLSASQAGLIVSAF 43

Query: 127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS 186
            +G  + S +   L+      R++ +GL ++   +     +   W + + R L+G+G  +
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGA 103

Query: 187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM 246
               AA  I +  P  ++   L +F      G  LG + GG++   L WR+ F   AIL 
Sbjct: 104 LYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163

Query: 247 LPFAVLAFVIKPL 259
           L  A+L   +  L
Sbjct: 164 LLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 43/152 (28%), Positives = 72/152 (47%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           +  D  ++  + G+L +AF +G  +A P+   L+      R++ +GL ++         +
Sbjct: 23  LAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFA 82

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
              W + + R+L G+G  +    AA  I D  P  ++   L +       G ALG + GG
Sbjct: 83  SSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGG 142

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259
           ++ S   WR AF   AIL L  AVLA ++ P 
Sbjct: 143 LLASLFGWRAAFLILAILALLAAVLAALLLPR 174

Length = 346

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 1/140 (0%)

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179
           G+L + + +G L+ SP+   L        ++ VGL ++  +TA    S +   + I R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239
            G G A  +   A  I D  P  ++   L +    I  G  LG   GGV+   L WR  F
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 240 WGEAILML-PFAVLAFVIKP 258
              AIL L  F +LAF++  
Sbjct: 121 LFLAILALAAFILLAFLLPE 140

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 67/348 (19%), Positives = 126/348 (36%), Gaps = 40/348 (11%)

Query: 106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG 165
             I  ++ L+  Q G L SA ++G+   +  F  LA      R++   + +++  T  C 
Sbjct: 41  PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCA 100

Query: 166 SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY 225
            + +   + I R L G+G    +      + + AP   +   + + +   P G A+G   
Sbjct: 101 LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL 160

Query: 226 GGVVGSHLNWRYAFW-GEAILMLPFAVLAFV----IKPLQLKGFAPAESGKAQVVASVSE 280
            G +     WR  F+ G    +L   +L       I  L  K          + + +   
Sbjct: 161 AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-----PETVRRIVNAIA 215

Query: 281 GSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE---KVYVVNVL 337
               +     + E  + Q ++RS+                   K L Q    ++ V+  L
Sbjct: 216 PQMQAEAQSALPEQKATQGTKRSVF------------------KALFQGKTARITVLLWL 257

Query: 338 GYIAYNFVIGAYSYWGPK----AGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMG 393
            Y      +   + W PK     G++     +     G +    G++G+I  G++ D++G
Sbjct: 258 LYFMLLVGVYFLTNWLPKLMVELGFS----LSLAATGGALFNFGGVIGSIIFGWLADRLG 313

Query: 394 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA-LFTVGELLVFAT 440
             ++    LL A   +   S L +  L  L G +A  F  G       
Sbjct: 314 PRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYA 361

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP) family

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 59/280 (21%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV--------- 228
           +L G+G     +L   +IDDN        +L + +     G A+G++ G           
Sbjct: 147 LLRGIGATPIFTLGISYIDDNVKSKNSPLYLGILFTMAMFGPAIGFLLGSFCLRLYVDFG 206

Query: 229 ----VGSHLN-----WRYAFW----GEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVV 275
                   +      W  A+W        L L  + + F   P  L     A+     + 
Sbjct: 207 RVPTEDVIITPTDPRWVGAWWLGFLVCGGLAL-LSAIPFFFFPKTLPK---AQGRLESLD 262

Query: 276 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN 335
            S  +  + +       E  S +++   +K             F +  K LL    +++ 
Sbjct: 263 LSRPKAKDETR--KQAEEPKSGKSAPDFLK------------DFPKTLKRLLTNPTFMLV 308

Query: 336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMS--NADMMFGGVTIVCGIVGTISGGFILDQMG 393
           VL  +  + VI  YS + PK     Y +S   A+ + G V +    VG + GG I+    
Sbjct: 309 VLAQVFESSVIAGYSTFLPKYLETQYGLSASYANFLIGVVNLPAAAVGILLGGLII---- 364

Query: 394 ATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG 433
                 FKL    T  G         L SL  +L  F +G
Sbjct: 365 ----KKFKL----TARGMAKFAIFVILVSLAFYLPYFFIG 396

This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters. Length = 582

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 62/319 (19%), Positives = 109/319 (34%), Gaps = 66/319 (20%)

Query: 120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML 179
           G L +A+ +G+ + +P+ A L       RL+   L+++  +      +  F  + + R L
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF 239
            G+    F S+AA       P  ++   L++ +  +     LG   G  +G    WR  F
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF 170

Query: 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299
              A+L    A+LA +   L  K   P+E   +                           
Sbjct: 171 LAIAVL----ALLALL---LLWKLLPPSEISGS--------------------------- 196

Query: 300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359
                           L    +   VLL     +   L    +      Y+Y  P    +
Sbjct: 197 --------LPGPLRTLLRLLRR-PGVLL---GLLATFLFMTGHF---ALYTYIRPFLE-S 240

Query: 360 IYHMSNAD-----MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC 414
           +   S +      + FG    + G +G + GG + D+         + L AA  L A++ 
Sbjct: 241 VAGFSVSAVSLVLLAFG----IAGFIGNLLGGRLADR------GPRRALIAALLLLALA- 289

Query: 415 LTAFCLSSLYGFLALFTVG 433
           L A   +     LAL  + 
Sbjct: 290 LLALTFTGASPALALALLF 308

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 28/151 (18%), Positives = 57/151 (37%), Gaps = 1/151 (0%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA-KSHNPFRLIGVGLSVWTFATAGCGS 166
           +Q    L+  + G+L S F +G ++ + +   L+ +      L+ +GL +          
Sbjct: 202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261

Query: 167 SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG 226
           +     + +  +L+G G             + AP   +     +F      G ALG +  
Sbjct: 262 APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIK 257
           G++     +   F   A L L  A+L  ++ 
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 71/358 (19%), Positives = 122/358 (34%), Gaps = 71/358 (19%)

Query: 76  LNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASP 135
           +NY+DR  ++                  +   +Q D  L+  Q G + SAF  G +V   
Sbjct: 5   INYLDRANLSF-----------------AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQF 47

Query: 136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS-----L 190
               L       + + V + +W   T     +  + S+ I R+L+G  EA F       +
Sbjct: 48  PGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV 107

Query: 191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL--MLP 248
           A+ F     P  ++   +S+F      G  +G    G +  H +W++AF  E +L  +  
Sbjct: 108 ASWF-----PASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162

Query: 249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG 308
              L F+  P Q   +   E     V   ++E                      + K   
Sbjct: 163 VLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGP---------------STPKK-- 205

Query: 309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGP-----KAGYNIYHM 363
                       Q  ++L   +V+ +  LG    N  +G +  W P     + G +I   
Sbjct: 206 -----------YQIKELLKDRRVWGL-ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA 253

Query: 364 SNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS 421
                    +  + G +G I GG + D     +    K L  A     I+ L    L 
Sbjct: 254 G----FMASLPGIVGFIGMILGGRLSD----LLLRRGKSLVFARKTAIIAGLVLSLLM 303

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 4/162 (2%)

Query: 108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS 167
           I GD   +  Q   + +++M+   ++ P+   LAK     RL  +    +T  +  CG +
Sbjct: 28  IAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA 87

Query: 168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG 227
            +   + I R++ G G    I L+   + +  P  ++   ++++ + +    ALG   GG
Sbjct: 88  PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG 147

Query: 228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES 269
            +  + +WR+ F       +P  ++  V+    L    PA S
Sbjct: 148 WIIENYHWRWIFLIN----VPIGIIVVVVAFFILPRDKPAAS 185

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 164 CGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY 223
              +++F  + I R+ +    A F S+ A      AP  +K   LS+    + TG AL  
Sbjct: 91  SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSL----LATGTALAM 146

Query: 224 VYG----GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL 259
           V G     V+G +L WR  F   AI       L  +IK L
Sbjct: 147 VLGLPLGRVIGQYLGWRTTFL--AIGGGALITLLLLIKLL 184

Length = 390

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 12/157 (7%)

Query: 107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS 166
            +  D  L+  Q G+L SAF +   V+  +   L+   NP   +  GL +        G 
Sbjct: 54  ALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF 113

Query: 167 SFDFWSIAICRMLVGV-----GEASFISLAAPFIDDNAPVPQKTAWLSMFYMC--IPTGV 219
           S   +  A+  +L G            ++   F        ++  W S++     I   +
Sbjct: 114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF-----SRKERGTWWSIWNTSHNIGGAL 168

Query: 220 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI 256
           A           H  WR AF+   I+ +  A++   +
Sbjct: 169 APLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205

Length = 448

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	444
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
KOG2533	495	consensus Permease of the major facilitator superf	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PRK09952	438	shikimate transporter; Provisional	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
TIGR00898	505	2A0119 cation transport protein.	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
PRK10504	471	putative transporter; Provisional	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
PRK11043	401	putative transporter; Provisional	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
PRK03633	381	putative MFS family transporter protein; Provision	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PRK12382	392	putative transporter; Provisional	99.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.94
PRK15011	393	sugar efflux transporter B; Provisional	99.94
KOG0569	485	consensus Permease of the major facilitator superf	99.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.93
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.93
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.92
PRK11010	491	ampG muropeptide transporter; Validated	99.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.91
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
PRK11902	402	ampG muropeptide transporter; Reviewed	99.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
PTZ00207	591	hypothetical protein; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
KOG2615	451	consensus Permease of the major facilitator superf	99.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.89
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.86
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.85
KOG3626	735	consensus Organic anion transporter [Secondary met	99.84
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.83
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.82
KOG2563	480	consensus Permease of the major facilitator superf	99.79
PRK09669	444	putative symporter YagG; Provisional	99.77
PF13347	428	MFS_2: MFS/sugar transport protein	99.77
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
PRK10429	473	melibiose:sodium symporter; Provisional	99.72
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.72
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.72
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.7
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.69
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.69
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.69
PRK09848	448	glucuronide transporter; Provisional	99.68
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.65
PRK11462	460	putative transporter; Provisional	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.63
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.62
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.6
COG2211	467	MelB Na+/melibiose symporter and related transport	99.59
PRK15011	393	sugar efflux transporter B; Provisional	99.59
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.55
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
PRK05122	399	major facilitator superfamily transporter; Provisi	99.54
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.52
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.52
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.52
PRK12382	392	putative transporter; Provisional	99.52
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.5
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.5
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.49
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.49
PRK09874	408	drug efflux system protein MdtG; Provisional	99.49
PRK03893	496	putative sialic acid transporter; Provisional	99.48
TIGR00893	399	2A0114 d-galactonate transporter.	99.47
PRK03545	390	putative arabinose transporter; Provisional	99.46
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.46
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.45
PRK09705	393	cynX putative cyanate transporter; Provisional	99.45
PRK03699	394	putative transporter; Provisional	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.44
PRK03633	381	putative MFS family transporter protein; Provision	99.43
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.4
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.4
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.39
TIGR00891	405	2A0112 putative sialic acid transporter.	99.38
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.36
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK09952	438	shikimate transporter; Provisional	99.32
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.31
PRK11010	491	ampG muropeptide transporter; Validated	99.3
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.29
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.28
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.25
PRK12307	426	putative sialic acid transporter; Provisional	99.25
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.24
PRK15075	434	citrate-proton symporter; Provisional	99.24
TIGR00900	365	2A0121 H+ Antiporter protein.	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.23
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.23
TIGR00898	505	2A0119 cation transport protein.	99.22
PLN00028	476	nitrate transmembrane transporter; Provisional	99.22
PRK10054	395	putative transporter; Provisional	99.22
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.21
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.21
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.19
TIGR00895	398	2A0115 benzoate transport.	99.19
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.19
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.18
PRK10504	471	putative transporter; Provisional	99.18
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.18
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.17
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.17
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.17
PRK11902	402	ampG muropeptide transporter; Reviewed	99.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.17
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.16
PRK10091	382	MFS transport protein AraJ; Provisional	99.16
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.15
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.15
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.14
KOG0569	485	consensus Permease of the major facilitator superf	99.11
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.1
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.08
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.06
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.05
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.05
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.03
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.02
KOG3762	618	consensus Predicted transporter [General function	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.99
PRK10133	438	L-fucose transporter; Provisional	98.99
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.96
PF13347	428	MFS_2: MFS/sugar transport protein	98.96
TIGR00901	356	2A0125 AmpG-related permease.	98.96
PRK09848	448	glucuronide transporter; Provisional	98.95
COG0477	338	ProP Permeases of the major facilitator superfamil	98.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.89
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.89
PRK11043	401	putative transporter; Provisional	98.88
PRK10429	473	melibiose:sodium symporter; Provisional	98.88
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.85
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.83
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.83
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.82
PRK09669	444	putative symporter YagG; Provisional	98.8
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.8
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.78
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.77
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.75
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.72
KOG0637	498	consensus Sucrose transporter and related proteins	98.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.65
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.62
COG2211	467	MelB Na+/melibiose symporter and related transport	98.61
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.54
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.54
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.52
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.5
PRK11462	460	putative transporter; Provisional	98.49
KOG3810	433	consensus Micronutrient transporters (folate trans	98.45
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.44
KOG2532	466	consensus Permease of the major facilitator superf	98.43
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.42
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.41
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.4
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.39
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.38
KOG0254	513	consensus Predicted transporter (major facilitator	98.3
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.25
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.12
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.11
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.08
PTZ00207	591	hypothetical protein; Provisional	98.07
PF12832	77	MFS_1_like: MFS_1 like family	97.94
KOG2533	495	consensus Permease of the major facilitator superf	97.94
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.88
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.87
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.85
KOG2615	451	consensus Permease of the major facilitator superf	97.71
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.63
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.58
KOG3762	618	consensus Predicted transporter [General function	97.5
PRK03612	521	spermidine synthase; Provisional	97.43
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.39
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.3
COG3202	509	ATP/ADP translocase [Energy production and convers	97.28
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.03
PF12832	77	MFS_1_like: MFS_1 like family	96.99
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.98
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.96
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.82
KOG2563	480	consensus Permease of the major facilitator superf	96.7
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.14
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.1
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.05
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.97
KOG3880	409	consensus Predicted small molecule transporter inv	95.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.9
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.81
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	95.51
KOG0637	498	consensus Sucrose transporter and related proteins	95.1
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	94.84
KOG3626	735	consensus Organic anion transporter [Secondary met	94.53
KOG3097	390	consensus Predicted membrane protein [Function unk	94.08
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.92
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.39
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.26
TIGR00805	633	oat sodium-independent organic anion transporter.	92.95
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.57
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.8
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.5
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.06
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.96
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	85.44
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	84.93
KOG3880	409	consensus Predicted small molecule transporter inv	84.65
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	83.56
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	83.49

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-36  Score=267.15  Aligned_cols=333  Identities=17%  Similarity=0.142  Sum_probs=267.2

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d  142 (444)
                      +++++..+++++...|+.|.+++.+                 .|.+.+|.++|.+|+|++.+.+.+.+.++-++.|.++|
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a-----------------~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD   89 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLA-----------------MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD   89 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhc-----------------cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3568889999999999999999876                 49999999999999999999999999999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchh
Q 013356          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (444)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~  222 (444)
                      |.+.|..+.+++++.++..+++++++|.+.+.++-+++|..+|+.+|.+...++.|+++++||+..++++.+-++|..+.
T Consensus        90 r~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~  169 (448)
T COG2271          90 RSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA  169 (448)
T ss_pred             cCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHH--HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhh
Q 013356          223 YVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQAS  300 (444)
Q Consensus       223 ~~l~--~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (444)
                      |++.  +++..+++||..|++.++++++..++.++..+++|+...-+.-++...+.                  .+.. +
T Consensus       170 ~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~------------------~e~~-~  230 (448)
T COG2271         170 PLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDP------------------LEIY-E  230 (448)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCc------------------hhhh-h
Confidence            9999  88998899999999999999999999999888877654433322211000                  0000 0


Q ss_pred             hhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccch
Q 013356          301 ERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI  379 (444)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  379 (444)
                      ++++++.      ...+  ..-.+.+++||.+|.++++.++.+..-+++..|.|.|+.|..|++...+ ...+++-.+++
T Consensus       231 ~~~~~~~------ls~~--~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl  302 (448)
T COG2271         231 EEKENEG------LTAW--QIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL  302 (448)
T ss_pred             hhccCCC------ccHH--HHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence            0000000      0000  1113457899999999999999999999999999999999999997776 55667779999


Q ss_pred             hhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHhhhc
Q 013356          380 VGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS--LYGFLALFTVGELLVFATQ  441 (444)
Q Consensus       380 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  441 (444)
                      +|++++||++||+.+.++.  ...+++.+...+.+......++  .+...+++.+.+++.++.+
T Consensus       303 ~G~Ll~GwlSDklfkgrR~--p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq  364 (448)
T COG2271         303 PGTLLAGWLSDKLFKGRRG--PMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ  364 (448)
T ss_pred             HHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH
Confidence            9999999999998643322  2233333444444444444443  4666666677777776654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.8e-35  Score=260.61  Aligned_cols=299  Identities=18%  Similarity=0.200  Sum_probs=246.2

Q ss_pred             HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (444)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G  145 (444)
                      .+..+.++.|..+.+.......                 +|++++|+|+|..+.|+..|.|.++..+++++...+.||+.
T Consensus        14 ~l~aLa~~~F~igttEfv~~gL-----------------Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~   76 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGL-----------------LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE   76 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhc-----------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            4555566666666655555433                 59999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356          146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (444)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l  225 (444)
                      ||++++..+.++.++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.++
T Consensus        77 Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPL  156 (394)
T COG2814          77 RRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPL  156 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhh
Q 013356          226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIK  305 (444)
Q Consensus       226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (444)
                      |.++.+.+|||+.|++.++++++..+..+..+|  ++.. +++++..                                 
T Consensus       157 Gt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~-~~~~~~~---------------------------------  200 (394)
T COG2814         157 GTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI-SGSLPGP---------------------------------  200 (394)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC-CCCCCcc---------------------------------
Confidence            999999999999999999999999988888888  1111 1111000                                 


Q ss_pred             cccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhh
Q 013356          306 SIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTIS  384 (444)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  384 (444)
                                    .++..+++|+|..+...+..++...+.+...+|+..++++..|++.... .....++++.++|.++
T Consensus       201 --------------~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~  266 (394)
T COG2814         201 --------------LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLL  266 (394)
T ss_pred             --------------hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHH
Confidence                          1123467899999999999999999999999999999999999987666 6667788999999999


Q ss_pred             hhhhhhhhcccchhhHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 013356          385 GGFILDQMGATISNAFKLLSAA-TFLGAISCLTAFCLSSLYGFLALFTVGELLV  437 (444)
Q Consensus       385 ~g~l~dr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (444)
                      +|++.|| +.|     +.+... .+.......+....++.+..++.+.++++..
T Consensus       267 gGrl~dr-~~~-----~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~  314 (394)
T COG2814         267 GGRLADR-GPR-----RALIAALLLLALALLALTFTGASPALALALLFLWGFAF  314 (394)
T ss_pred             Hhhhccc-cch-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            9999999 555     334333 3334444444444555555555555544433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.1e-33  Score=267.32  Aligned_cols=298  Identities=16%  Similarity=0.232  Sum_probs=228.0

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~  141 (444)
                      .+|+....+++.++++++|+.+++.+.                 |.+++|+|++..+.|++.+++.+++.+++++.|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~   67 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAG-----------------LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIML   67 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHH-----------------HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            345688888999999999999998763                 889999999999999999999999999999999999


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      ||+|||+++..++++++++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++
T Consensus        68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~  147 (412)
T TIGR02332        68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL  147 (412)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcc
Q 013356          222 GYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  295 (444)
Q Consensus       222 ~~~l~~~l~~------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (444)
                      ++++++++.+      ..|||+.|++.++++++..++.++++||++++.....++++....+.   .+....+.++.+  
T Consensus       148 ~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~--  222 (412)
T TIGR02332       148 GLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEM---IDNDQLTLEQPE--  222 (412)
T ss_pred             HHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHH---HHhccccccccc--
Confidence            9999988763      36999999999988887777777777886643210000000000000   000000000000  


Q ss_pred             cchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccccc-ccCCcchh-hhhhh
Q 013356          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI-YHMSNADM-MFGGV  373 (444)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~  373 (444)
                       ....+   +.       ..   ..+.++.+ +++.++...+..++.....+.+.+|+|.++++. .+.+.... .....
T Consensus       223 -~~~~~---~~-------~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~  287 (412)
T TIGR02332       223 -GAFAH---AA-------MP---QRSMLREI-FTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAI  287 (412)
T ss_pred             -ccccc---cc-------cc---HHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhH
Confidence             00000   00       00   00112223 357788888888888888889999999999873 35554444 55667


Q ss_pred             hcccchhhhhhhhhhhhhhcccc
Q 013356          374 TIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       374 ~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ..++.+++.++.|+++||+++|+
T Consensus       288 ~~l~~~~g~l~~g~l~dr~~~r~  310 (412)
T TIGR02332       288 PQFCTIFGMIWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHHHHHHHHHHhcccCccH
Confidence            77889999999999999999774

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.1e-34  Score=253.76  Aligned_cols=284  Identities=38%  Similarity=0.682  Sum_probs=239.7

Q ss_pred             CCCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhh
Q 013356           58 PSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIF  137 (444)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~  137 (444)
                      ...+..++.+.++++..+++++|+..+...                 ++.+++.||++++..|++.+.+.+++.+++|++
T Consensus        26 ~~~~~~~~~l~il~~vnlmny~Dr~~iagv-----------------~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~   88 (493)
T KOG1330|consen   26 LSMKSPTLTLVILCLVNLMNYADRYTIAGV-----------------LKEVQTYFNISDSELGLLQTVFIVVFMIASPLF   88 (493)
T ss_pred             cccccchHHHHHHHHHHHHHHhhhhhhhhh-----------------hHHHHHhcCCCchhccchhHHHHHHHHHHHHHH
Confidence            444555668889999999999999998865                 389999999999999999999999999999999


Q ss_pred             hhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (444)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (444)
                      |+++|||.||+++.+|.++|+++.++++++..||+++++|.+.|+|.+...++.+.+++|.+|..+|++++++++.+.++
T Consensus        89 gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipv  168 (493)
T KOG1330|consen   89 GYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPV  168 (493)
T ss_pred             HHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCccc
Q 013356          218 GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDIS  296 (444)
Q Consensus       218 G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (444)
                      |..+|.+.+..+.++.+ |||.|++.++++++.+++.+++.+|+++...++.+.+...                      
T Consensus       169 GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~----------------------  226 (493)
T KOG1330|consen  169 GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM----------------------  226 (493)
T ss_pred             ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC----------------------
Confidence            99999999999888766 9999999999999999999998888654321111110000                      


Q ss_pred             chhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccc---cCC-cchhhhhh
Q 013356          297 DQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIY---HMS-NADMMFGG  372 (444)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~  372 (444)
                                      .....+.+++.+.+.+++.+....+......+...++..|.|.+++..+   +.+ ...+.+..
T Consensus       227 ----------------~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~  290 (493)
T KOG1330|consen  227 ----------------VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGG  290 (493)
T ss_pred             ----------------CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhh
Confidence                            0112234667777888899999888888888888888888888765433   222 23447778


Q ss_pred             hhcccchhhhhhhhhhhhhhcccc
Q 013356          373 VTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       373 ~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      +...++.+|.+++|.++||+.+..
T Consensus       291 vt~~~G~lGvl~Ggiisd~~~~~~  314 (493)
T KOG1330|consen  291 VTCAGGSLGVLFGGIISDKLSRIF  314 (493)
T ss_pred             HHHhhchhhheehHHHHHHHHHhc
Confidence            888999999999999999976643

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=2.9e-32  Score=268.15  Aligned_cols=188  Identities=16%  Similarity=0.156  Sum_probs=163.5

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~  141 (444)
                      ..|.++++++++.+..+++...++..                 +|.+.++++++..+.+++.+++.++.+++++++|+++
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~i-----------------lp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~Ls  226 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGFV-----------------LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLA  226 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777778888887777654                 4889999999999999999999999999999999999


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      ||+|||+++++++++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.++++..++.+|.++
T Consensus       227 DR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il  306 (742)
T TIGR01299       227 DKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY  306 (742)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhcc-------------cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCC
Q 013356          222 GYVYGGVVGSH-------------LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (444)
Q Consensus       222 ~~~l~~~l~~~-------------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (444)
                      ++.++..+...             .+||+.+++.+++.++. ++.++++||+|++...+
T Consensus       307 a~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~  364 (742)
T TIGR01299       307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLEN  364 (742)
T ss_pred             HHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHC
Confidence            99888666532             36999998887765554 44556679999876444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=2.3e-32  Score=252.84  Aligned_cols=243  Identities=12%  Similarity=0.025  Sum_probs=192.0

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.+|.+++|+|+|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+.+....+.+.....+|++.++++|+++|+
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~   91 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAAL   91 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            45699999999999999999999999999999999999999999988766555554544333344799999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (444)
                      +.+. .......++|++|+++|++++++.+.+..+|.++++++++++.+++|||+.|++.++++++..++.++.+||+++
T Consensus        92 g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903        92 GQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPF  170 (368)
T ss_pred             HhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9985 566667779999999999999999999999999999999999999999999999999888887777777888654


Q ss_pred             CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (444)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      +..+  ..+ .                          .             +    ..+++++++++|.+|...+..++.
T Consensus       171 ~~~~--~~~-~--------------------------~-------------~----~~~~~~~ll~~~~~~~~~~~~~~~  204 (368)
T TIGR00903       171 QAAE--GFG-F--------------------------K-------------D----AVKEFGALAGRKDLWIIGAILGFG  204 (368)
T ss_pred             CCCC--Ccc-h--------------------------H-------------H----HHHHHHHHHcChhHHHHHHHHHHH
Confidence            3210  000 0                          0             0    011245678999999999999999


Q ss_pred             HHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          343 NFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ...++++..|+|.|+++ .+.+........+   ....+.+..+++.||..||.
T Consensus       205 ~~~~~~~~~wlp~~L~~-~g~s~~~~~~~~l---~~~~g~~g~~~~~d~~~r~~  254 (368)
T TIGR00903       205 VALFDNLAIWLEAALRP-AGLEDIAGDAVAL---AILAGLIGVAVIPDRVARAG  254 (368)
T ss_pred             HHHHHHHHHHHHHHHHH-CCCChHHHHHHHH---HHHHHHHHHHHhhHHhhhhh
Confidence            99999999999999976 5666432233333   33445555688999987653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=6.8e-33  Score=266.48  Aligned_cols=290  Identities=12%  Similarity=0.087  Sum_probs=224.2

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d  142 (444)
                      .+.++..+++.+++.++++..++.+                 +|.+.+|+|++..+.|++.+.+.+++.+++++.|+++|
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   89 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAA-----------------QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD   89 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh
Confidence            4456778888889999999999865                 48999999999999999999999999999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356          143 SHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (444)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~-----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (444)
                      |+|||+++.++.++++++.++.++     ++|++.+++.|+++|++.+...+....+++|++|+++||++++++..+.++
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            999999999888888777766554     689999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHHHHhhccc---chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCc
Q 013356          218 GVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (444)
Q Consensus       218 G~~~~~~l~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (444)
                      |.+++++++.++.+..   +||..|.+.+++.++..++.+++.++.+.+....+.++..         ++ ....+.   
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~---------~~-~~~~~~---  236 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF---------GE-PISEED---  236 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc---------cC-ccchhh---
Confidence            9999999887766543   6999999988888877776666656543321111000000         00 000000   


Q ss_pred             ccchhhhhhhhcccchhhhhhhcccccc-chhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhh
Q 013356          295 ISDQASERSIKSIGESRFLNQLSQFSQD-TKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (444)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  372 (444)
                         .   ..++.+      ..   ..+. .+..+++|.+|...+..++.....++...|+|.|+++.+|.+..+. ....
T Consensus       237 ---~---~~~~~~------~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~  301 (467)
T PRK09556        237 ---K---ETESTD------MT---KWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFT  301 (467)
T ss_pred             ---h---cccccc------Cc---HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence               0   000000      00   0000 1236788999999888888888888889999999998889887655 5555


Q ss_pred             hhcccchhhhhhhhhhhhhhcccch
Q 013356          373 VTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       373 ~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      ...++.+++.+++|+++||+++|+.
T Consensus       302 ~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        302 LFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCch
Confidence            6677899999999999999998853

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=9.6e-32  Score=253.03  Aligned_cols=239  Identities=17%  Similarity=0.135  Sum_probs=199.7

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+++|+|.|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++++++++++|++.++++|+++|++.
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  111 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH  111 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+++|||+.|++.++++++..+..++..|+.+++ 
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-  190 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-  190 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-
Confidence            9899999999999999999999999999999999999999999999989999999999988877766655555553210 


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                          +++ .                                              .++.++.+|+|.++...+..++...
T Consensus       191 ----~~~-~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (390)
T PRK03545        191 ----HSG-S----------------------------------------------LKSLPLLFRRPALVSLYLLTVVVVT  219 (390)
T ss_pred             ----Ccc-h----------------------------------------------HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence                000 0                                              0122356778887766655555555


Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      ..+....+.+.++++..|.+.... .......++.++++++.+++.||.++|
T Consensus       220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  271 (390)
T PRK03545        220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG  271 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            555556677777777778776655 455566678899999999999999876

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=9.8e-32  Score=259.89  Aligned_cols=313  Identities=13%  Similarity=0.057  Sum_probs=230.5

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d  142 (444)
                      .|..+..+++..++..+|.+.++.+                 +|.+.+|+|.+.++.+|+.+.|.++..++.+++|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a-----------------~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D   66 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVA-----------------APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD   66 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457788899999999999999876                 49999999999999999999999999999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccch
Q 013356          143 SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      |+|||++++++.+++.++++++++++|++.++++|+++|+|.+...+.....+.+.+ |+++|++++++......+|.++
T Consensus        67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~  146 (495)
T PRK14995         67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF  146 (495)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888888887765 6789999999999999999999


Q ss_pred             hhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhcc-------ccccccCCCCcccCCc
Q 013356          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV-------SEGSEASNLNDHVSED  294 (444)
Q Consensus       222 ~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  294 (444)
                      ||.+++++.+++||||.|++...++++..++.++.+|++++...  ++.+.......       ................
T Consensus       147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  224 (495)
T PRK14995        147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD--QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWV  224 (495)
T ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCChHhHHHHHHHHHHHHHHHHhccccCCchHH
Confidence            99999999999999999999888777777666677676432211  10000000000       0000000000000000


Q ss_pred             ccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhh
Q 013356          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGV  373 (444)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  373 (444)
                      .......-...-........+.++...+ .+++|+|.+....+..++.....++..++.|.|+++.+|.++... .....
T Consensus       225 ~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~  303 (495)
T PRK14995        225 TSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLP  303 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            0000000000000000000001111112 357889998888888888888888888899999999999987776 55556


Q ss_pred             hcccchhhhhhhhhhhhhhccc
Q 013356          374 TIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       374 ~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      ..++..++.++.|++.||+++|
T Consensus       304 ~~~~~~~~~~~~g~l~~r~g~~  325 (495)
T PRK14995        304 VMVASGFSGPIAGILVSRLGLR  325 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCch
Confidence            6678889999999999999987

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=3.1e-31  Score=252.61  Aligned_cols=286  Identities=15%  Similarity=0.198  Sum_probs=222.0

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      ++++...++.++..++++..++..                 +|.+.+++|+|..+.+++.+.+.+++.+++++.|+++||
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   84 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNAA-----------------MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR   84 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHh-----------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            345666777778888877766644                 489999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  223 (444)
                      +|||+++.++.++.+++.++.++++|++.+++.|++.|++.|..++...+++.|++|+++|++++++.+.+.++|.++++
T Consensus        85 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~  164 (434)
T PRK11663         85 SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIP  164 (434)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhh
Q 013356          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (444)
Q Consensus       224 ~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (444)
                      .+++++.+++|||+.|++.+++.++..++.++.+||++++...++..++..+..               +     ..++.
T Consensus       165 ~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~---------------~-----~~~~~  224 (434)
T PRK11663        165 LVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDAL---------------E-----LAQQQ  224 (434)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccccc---------------c-----cchhc
Confidence            999999999999999999988777666555556676543321111110000000               0     00000


Q ss_pred             hhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhh
Q 013356          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  382 (444)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (444)
                      ++.  .    ...++..+  ...++++.++...+..++.....+.+..|+|.|+.+.+|.+.... .......++.++++
T Consensus       225 ~~~--~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~  296 (434)
T PRK11663        225 EGA--G----LSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA  296 (434)
T ss_pred             ccc--C----CChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            000  0    00000000  124678888888887777777788888899999977788886655 55566678899999


Q ss_pred             hhhhhhhhhhcc
Q 013356          383 ISGGFILDQMGA  394 (444)
Q Consensus       383 ~~~g~l~dr~~~  394 (444)
                      ++.|++.||+.+
T Consensus       297 ~~~g~l~dr~~~  308 (434)
T PRK11663        297 LVAGWGSDKLFN  308 (434)
T ss_pred             HHHhhhHHHhcc
Confidence            999999999843

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.98  E-value=9.8e-31  Score=251.94  Aligned_cols=304  Identities=13%  Similarity=0.108  Sum_probs=228.8

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccC-----CCCccccccccccccccCccchhHHHHHHHHHHHHHhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCD-----DKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPI  136 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~  136 (444)
                      .++.+...++++..+++.|+.+++.+.........+     +....|.......|++++..+.|++.+.+.+++.+++++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~   95 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP   95 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence            334577777888889999999998774311100000     000001111122378999999999999999999999999


Q ss_pred             hhhhhhhcCCcchhHHHHHHHHHHHHhhhch--hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhh
Q 013356          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (444)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (444)
                      .|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+
T Consensus        96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894        96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887544  56888999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCC
Q 013356          215 IPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSE  293 (444)
Q Consensus       215 ~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (444)
                      ..+|.++++++++.+.+. .+||+.|++.+++.++..++.+++.+|+|+..... ++++....+.  .            
T Consensus       176 ~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~i~~--~------------  240 (465)
T TIGR00894       176 FQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEKKYINS--S------------  240 (465)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHHHHHHh--h------------
Confidence            999999999999999988 49999999999988777776666666654321111 0000000000  0            


Q ss_pred             cccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhh
Q 013356          294 DISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGG  372 (444)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  372 (444)
                       .    +++  +.         ..+...+++++++++.++...+..+......+.+.+|+|.|+++.+|.+.... ....
T Consensus       241 -~----~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~  304 (465)
T TIGR00894       241 -L----QGQ--KG---------STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSS  304 (465)
T ss_pred             -c----ccc--cC---------CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHH
Confidence             0    000  00         00001235677889999999999999999999999999999998888887665 5556


Q ss_pred             hhcccchhhhhhhhhhhhhhcccc
Q 013356          373 VTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       373 ~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      +..++.+++.+++|+++||+++|+
T Consensus       305 ~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       305 LPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777888999999999999987653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=4.8e-31  Score=251.24  Aligned_cols=264  Identities=14%  Similarity=0.089  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccc---cCccchhHHHH---HHHHHHHHHhhhhhh
Q 013356           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFK---LNNFQDGVLSS---AFMVGLLVASPIFAS  139 (444)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~---~s~~~~~~~~s---~~~l~~~~~~~~~g~  139 (444)
                      .+...+++++++++|...++...                 |.+.++++   .+..+.+...+   ..+++..++++++|+
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~   85 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCS-----------------LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGR   85 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666778899999999988763                 88888885   44554444444   444555599999999


Q ss_pred             hhhhcCCcchhHHHHHHHHHHHHhhhchhhHH--------HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHH
Q 013356          140 LAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMF  211 (444)
Q Consensus       140 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~  211 (444)
                      ++||+|||+++..+.++++++++++++++++.        .++++|+++|++.|..++...+++.|++|+++|+++.++.
T Consensus        86 l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~  165 (432)
T PRK10406         86 IADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQ  165 (432)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHH
Confidence            99999999999999999999999999998874        5889999999999999999999999999999999999999


Q ss_pred             hhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccc
Q 013356          212 YMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  283 (444)
Q Consensus       212 ~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  283 (444)
                      +.+...|.++++.++..+.        +.+|||++|++.++++++... .....||+++..    + + .    .     
T Consensus       166 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~~~~----~-~-~----~-----  229 (432)
T PRK10406        166 YVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETSQQE----T-R-A----L-----  229 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCchHH----H-h-h----h-----
Confidence            9888888888877655443        257999999988776654432 222234422110    0 0 0    0     


Q ss_pred             cCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH-HHHHHHHHHhhcccccccccc
Q 013356          284 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA-YNFVIGAYSYWGPKAGYNIYH  362 (444)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  362 (444)
                                                    ++    ..++++++++++.+...+...+ ....++.+..|+|.|+++.+|
T Consensus       230 ------------------------------~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g  275 (432)
T PRK10406        230 ------------------------------KE----AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAG  275 (432)
T ss_pred             ------------------------------cc----cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                          00    0123445667777665554443 356677888899999988778


Q ss_pred             CCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          363 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       363 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .+.... ....+..+...++..+.|+++||++||+
T Consensus       276 ~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~  310 (432)
T PRK10406        276 MHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT  310 (432)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence            776544 4444545666777888999999999984

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=3.7e-30  Score=241.68  Aligned_cols=236  Identities=15%  Similarity=0.121  Sum_probs=190.4

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+.+++|.++++.++..+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            38899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +...+...+++.|++|+++|+++.++...+.++|.+++|++++.+.+++|||+.|++.++++++..+..+...||.+++ 
T Consensus       123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-  201 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-  201 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-
Confidence            9999999999999999999999999999999999999999999999999999999998877665554444444542210 


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                          +++ .                                              .++.++.+++|.++...+..++...
T Consensus       202 ----~~~-~----------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~  230 (394)
T PRK10213        202 ----PSH-Q----------------------------------------------KQNTFRLLQRPGVMAGMIAIFMSFA  230 (394)
T ss_pred             ----ccc-c----------------------------------------------hhHHHHHhcCHHHHHHHHHHHHHHH
Confidence                000 0                                              0012345678888876666555555


Q ss_pred             HHHHHHhhc-cccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhc
Q 013356          345 VIGAYSYWG-PKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMG  393 (444)
Q Consensus       345 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~  393 (444)
                      ..+....+. |.+.+ ..|.+.... .......++.+++.++.+++.||.+
T Consensus       231 ~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~  280 (394)
T PRK10213        231 GQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV  280 (394)
T ss_pred             HHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            555555565 55554 467776554 4445556778888888888888843

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=3e-30  Score=247.96  Aligned_cols=251  Identities=13%  Similarity=0.038  Sum_probs=192.6

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++++.++++|+++|++.
T Consensus        59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  138 (476)
T PLN00028         59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL  138 (476)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh----c-----ccchhHHHHHHHHHHHHHHHHHHh
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG----S-----HLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~----~-----~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      +.. .....+++|++|+++|++++++.....++|..+++.+.+.+.    +     ..|||+.|++.+++.++..++.++
T Consensus       139 ~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        139 ATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             Hhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            764 445678999999999999999998777777777766554432    2     258999999999988877666655


Q ss_pred             hccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhH
Q 013356          256 IKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN  335 (444)
Q Consensus       256 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (444)
                      +.++.+...     .++..   ++      .               ..++        .   +..+.+++.++++++|..
T Consensus       218 ~~~~~p~~~-----~~~~~---~~------~---------------~~~~--------~---~~~~~~~~~~~~~~~~~~  257 (476)
T PLN00028        218 LGQDLPDGN-----YRELK---KS------G---------------TMPK--------D---SFSKVLRYGVTNYRTWIL  257 (476)
T ss_pred             HcCcCCCCc-----hhhHH---hc------C---------------cccc--------c---cHHHHHHHHHcCchhHHH
Confidence            543322110     00000   00      0               0000        0   001223455778888887


Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          336 VLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .+.++......+.+..++|.|+.+.+|.+.... .+..+..++.+++++++|+++||++||+
T Consensus       258 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~  319 (476)
T PLN00028        258 ALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRF  319 (476)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence            777766666666777889999888788886655 5666777899999999999999999874

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=2.1e-30  Score=245.64  Aligned_cols=274  Identities=18%  Similarity=0.209  Sum_probs=213.4

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~  141 (444)
                      +.|..+.++++..+++++|...++..                 .|.+.+++|.++.+.+++.+.+.++..+++++.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~   74 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVA-----------------APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLA   74 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777778888999998888765                 4889999999999999999999999999999999999


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      ||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus        75 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  154 (406)
T PRK11551         75 DRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGAL  154 (406)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhh
Q 013356          222 GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASE  301 (444)
Q Consensus       222 ~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (444)
                      ++.+++.+.+..+||+.|++.+++.++..++..+++||++++..++++.+..                       +    
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------~----  207 (406)
T PRK11551        155 ASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----------------------A----  207 (406)
T ss_pred             HHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------h----
Confidence            9999988888899999999988776666665666667754321110000000                       0    


Q ss_pred             hhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchh
Q 013356          302 RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIV  380 (444)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  380 (444)
                                  ..    .+...+..+.+..+...+..+......+....|.|.++++ .|.+.... .......++.++
T Consensus       208 ------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~  270 (406)
T PRK11551        208 ------------PV----LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGAL  270 (406)
T ss_pred             ------------hh----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHH
Confidence                        00    0000000011223333344445555566777788998877 57766554 555566788899


Q ss_pred             hhhhhhhhhhhhcccc
Q 013356          381 GTISGGFILDQMGATI  396 (444)
Q Consensus       381 ~~~~~g~l~dr~~~~~  396 (444)
                      +.++.|++.||+++|+
T Consensus       271 ~~~~~g~l~dr~g~~~  286 (406)
T PRK11551        271 GSLLIGALMDRLRPRR  286 (406)
T ss_pred             HHHHHHHHHHHHhHHH
Confidence            9999999999999873

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.3e-31  Score=246.66  Aligned_cols=294  Identities=20%  Similarity=0.249  Sum_probs=241.4

Q ss_pred             CCCCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhh
Q 013356           57 TPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPI  136 (444)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~  136 (444)
                      +..++....++..++..++..+.|+..++.+.+                ..+.+|.+....+.+.+.++++++++++.++
T Consensus        37 ~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l----------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p  100 (495)
T KOG2533|consen   37 KLLRKLDLFILPFLCYLYFHAYLDKSSIVNASL----------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFP  100 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhcchhHHH----------------cCCccccchhhhhhhhHHHHHHHHHHHHHhh
Confidence            444555566778888899999999999987654                4577899999999999999999999999999


Q ss_pred             hhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcc
Q 013356          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  216 (444)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  216 (444)
                      +|.+.||++-.+.+....+++++..++.+..+|++.+++.|++.|+..+..+|....+++.|+.+++|+..++++.+..+
T Consensus       101 ~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~  180 (495)
T KOG2533|consen  101 SGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASAS  180 (495)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcc
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhhHHHHh------hcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcc
Q 013356          217 TGVALGYVYGGVV------GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDH  290 (444)
Q Consensus       217 ~G~~~~~~l~~~l------~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (444)
                      +|.++|.+++..+      ....||||.|++.++++++..++.++++|+.|....-.++.++....++            
T Consensus       181 ~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~------------  248 (495)
T KOG2533|consen  181 LGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVER------------  248 (495)
T ss_pred             hhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHH------------
Confidence            9999999999885      3357999999999999999999999999986653211111100000000            


Q ss_pred             cCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-h
Q 013356          291 VSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-M  369 (444)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  369 (444)
                              .++.+.....     ++  ..+..+++.+++|.+|...++.++.....+++.+|+|.++.+..+++..+. .
T Consensus       249 --------~~~~~~~~~~-----~~--~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~  313 (495)
T KOG2533|consen  249 --------LRESPSGGIE-----NK--FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL  313 (495)
T ss_pred             --------HHhccCCCcc-----cc--cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc
Confidence                    0000000000     00  114456788999999999999999999999999999999999666776666 7


Q ss_pred             hhhhhcccchhhhhhhhhhhhhhc
Q 013356          370 FGGVTIVCGIVGTISGGFILDQMG  393 (444)
Q Consensus       370 ~~~~~~~~~~~~~~~~g~l~dr~~  393 (444)
                      ++....++++++.+++|+++||+.
T Consensus       314 ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  314 LSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             ccchHHhhhHHHHHHHHHHHHHHh
Confidence            778888999999999999999954

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=5.8e-30  Score=241.76  Aligned_cols=244  Identities=11%  Similarity=0.084  Sum_probs=198.4

Q ss_pred             cccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356          102 CTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (444)
Q Consensus       102 ~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  181 (444)
                      .|++|.+.++++.+.++.++..+++.+++.++++++|+++||+|||+++..+.++++++.+++++++|++.++++|+++|
T Consensus        36 ~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G  115 (413)
T PRK15403         36 QPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQG  115 (413)
T ss_pred             ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      ++.+...+....++.|++|+++|++++++......+|..+||++++.+.++.|||+.|++.+++.++..+..++..||++
T Consensus       116 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        116 TSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            99887777778889999999999999999999999999999999999998889999999999887777665556667643


Q ss_pred             cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (444)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +..   ++...                                           .++..++++.++++|.++...+..++
T Consensus       196 ~~~---~~~~~-------------------------------------------~~~~~~~~~~ll~~~~~~~~~l~~~~  229 (413)
T PRK15403        196 KRG---AVPFS-------------------------------------------AKSVLRDFRNVFRNRLFLTGAATLSL  229 (413)
T ss_pred             ccc---CCCCC-------------------------------------------hHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            210   00000                                           00012344567899999998888888


Q ss_pred             HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhh
Q 013356          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ  391 (444)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr  391 (444)
                      .....+.+..+.|.++++.+|.++... ........+.+++..+.+.+.++
T Consensus       230 ~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~  280 (413)
T PRK15403        230 SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKD  280 (413)
T ss_pred             HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888888888899999999888887665 33333344555555555555433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=1.4e-30  Score=246.07  Aligned_cols=265  Identities=20%  Similarity=0.212  Sum_probs=212.5

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      .|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++++|++.++++|++.|++.
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE   96 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+||+.|++.+++.++..+..++..||+++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA  176 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc
Confidence            99999999999999999999999999999999999999999999988899999999998887777766666666644321


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                      ...++++   +...   .+....+          .+.+           +..+......++.+++|.++...+..++...
T Consensus       177 ~~~~~~~---~~~~---~~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       177 KWLTEEE---KYIV---VGGLLAE----------QQGK-----------GPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             ccCCHHH---Hhhc---chhhccc----------cccc-----------cccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            1100000   0000   0000000          0000           0000112234566788899988888888888


Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ....+..+.|.|+++..+.+.... .......++.+++.++.+++.||++||+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            888899999999988888876555 5556667788999999999999999985

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.97  E-value=5.4e-30  Score=240.25  Aligned_cols=240  Identities=15%  Similarity=0.155  Sum_probs=195.7

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+++|+|.+.++.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++++++|++.+++.|+++|++.
T Consensus        26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~  105 (382)
T PRK10091         26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPH  105 (382)
T ss_pred             hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +...+....++.|++++++|++++++...+..+|..+++++++++.+..+||+.|++.+++.++..+..++..||.++. 
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~-  184 (382)
T PRK10091        106 GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE-  184 (382)
T ss_pred             HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc-
Confidence            9888888999999999999999999999999999999999999999889999999999988777666666666663210 


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                         ++.+ .                                        +      +. .+.++++..+......++...
T Consensus       185 ---~~~~-~----------------------------------------~------~~-~~~~~~~~~~~~~~~~~~~~~  213 (382)
T PRK10091        185 ---AKGG-L----------------------------------------R------EQ-FHFLRSPAPWLIFAATMFGNA  213 (382)
T ss_pred             ---cccC-H----------------------------------------H------HH-HHHhcChHHHHHHHHHHHHHH
Confidence               0000 0                                        0      00 123455656655544444444


Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ..+....+.+.++++..|.++... .......++.+++.++.+++.||+++|+
T Consensus       214 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~  266 (382)
T PRK10091        214 GVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR  266 (382)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh
Confidence            444555566667776678876655 5556677889999999999999999873

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=8.3e-30  Score=240.01  Aligned_cols=265  Identities=14%  Similarity=0.063  Sum_probs=209.6

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      +++...+++.+++.+.+...++..                 +|.+.+++|+|+++.+++.+.+.+++.+++++.|++.||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~g~~-----------------~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr   68 (394)
T PRK03699          6 IKLTWISFLSYALTGALVIVTGMV-----------------MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI   68 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346667777777887776666644                 489999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  223 (444)
                      +|||+++..+.++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|+++++..+....+|..++|
T Consensus        69 ~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~  148 (394)
T PRK03699         69 IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFP  148 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhh-cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhh
Q 013356          224 VYGGVVG-SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER  302 (444)
Q Consensus       224 ~l~~~l~-~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (444)
                      .+.+.+. +..+||+.|.+.+++.++..++.++  .+.++.    ++++..  +.                         
T Consensus       149 ~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~----~~~~~~--~~-------------------------  195 (394)
T PRK03699        149 IIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPAL----GKHAPK--AD-------------------------  195 (394)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccc----cccCcc--cc-------------------------
Confidence            8888765 4579999999988877665544332  221110    000000  00                         


Q ss_pred             hhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhh
Q 013356          303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVG  381 (444)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  381 (444)
                        +        +       ..+. ..++.++...+..++.....+.+..|+|.|+++.+|.+..+. .......++..++
T Consensus       196 --~--------~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig  257 (394)
T PRK03699        196 --K--------P-------VAKE-KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVG  257 (394)
T ss_pred             --C--------c-------cccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHH
Confidence              0        0       0000 123556666666777777778888999999988888887655 5555667788999


Q ss_pred             hhhhhhhhhhhcccc
Q 013356          382 TISGGFILDQMGATI  396 (444)
Q Consensus       382 ~~~~g~l~dr~~~~~  396 (444)
                      +++.+++.||+++|+
T Consensus       258 ~~~~g~l~dr~~~~~  272 (394)
T PRK03699        258 MWIFSFIVRFFDLQR  272 (394)
T ss_pred             HHHHHHHHHHhchhh
Confidence            999999999999984

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=4.6e-30  Score=248.11  Aligned_cols=278  Identities=12%  Similarity=0.082  Sum_probs=198.1

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccc-hhHH-----HHHHHHHHHHHhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQ-DGVL-----SSAFMVGLLVASPIF  137 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~-~~~~-----~s~~~l~~~~~~~~~  137 (444)
                      ++.+....++.+++++|...++..                 .|.+.++++.+.+. .+++     .++..++..++++++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~   77 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFV-----------------AYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFF   77 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777788999999999998866                 38888888654322 2222     477889999999999


Q ss_pred             hhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHH--------HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHH
Q 013356          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS  209 (444)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  209 (444)
                      |+++||+|||+++.+++++++++++++++++|+++        ++++|+++|++.|+.++...+++.|++|+++||++.+
T Consensus        78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~  157 (490)
T PRK10642         78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS  157 (490)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence            99999999999999999999999999999999875        8899999999999999999999999999999999999


Q ss_pred             HHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccc
Q 013356          210 MFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  281 (444)
Q Consensus       210 ~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  281 (444)
                      +...+..+|.++++.++..+.        ..+|||+.|++.+++.++ .++....+||++++....++.++.   .    
T Consensus       158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~---~----  229 (490)
T PRK10642        158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQG---D----  229 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhh---c----
Confidence            999888888888876654432        257999999997765553 333344557755432110000000   0    


Q ss_pred             cccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhccc-C-cchhhHHHHHHHHHHHHHHHHhhccccccc
Q 013356          282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-E-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  359 (444)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (444)
                        +        +...     +.+               ..+++++++ + +.+.......++....++.+..|+|.|+++
T Consensus       230 --~--------~~~~-----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~  279 (490)
T PRK10642        230 --R--------EGLQ-----DGP---------------KVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSH  279 (490)
T ss_pred             --c--------cccc-----ccc---------------cCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0        0000     000               001122222 1 122222233344556777888899999987


Q ss_pred             cccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .+|.+.... .......++.+++.++.|+++||+|||+
T Consensus       280 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~  317 (490)
T PRK10642        280 NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP  317 (490)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            778775444 3444555778888999999999999984

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=2.7e-30  Score=240.25  Aligned_cols=253  Identities=22%  Similarity=0.369  Sum_probs=200.0

Q ss_pred             cc-ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          105 GS-GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       105 l~-~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      +| .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..+++|++.++++|++.|++
T Consensus        19 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~   98 (352)
T PF07690_consen   19 LPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIG   98 (352)
T ss_dssp             HH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccc
Confidence            36 78999999999999999999999999999999999999999999999999999977777778888999999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      .+...+....++.|++|+++|++++++......+|.++++.+++.+.++++||+.|++.+++.++..++..++.+++++.
T Consensus        99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  178 (352)
T PF07690_consen   99 SGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPP  178 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred             cccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999889999999999999888877554555554333


Q ss_pred             CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (444)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      ...+++.+..                           +            +..++..+.++.+.++|.+|......+...
T Consensus       179 ~~~~~~~~~~---------------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (352)
T PF07690_consen  179 RERESPKESE---------------------------S------------KKPKPLKPGFKSLFKNPVLWILLIAFFLFF  219 (352)
T ss_dssp             TT--SSTTTT-----------------------------------------HHHCCCH-CTHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccc---------------------------c------------ccccccccccccccccchhhhhhhhhhHHH
Confidence            2221111100                           0            000001112455666777765556666666


Q ss_pred             HHHHHHHhhccccccccccCC-cchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          344 FVIGAYSYWGPKAGYNIYHMS-NADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ........+.|.|+.+.++.+ .... .......+..+++.++.+++.||+++++
T Consensus       220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  274 (352)
T PF07690_consen  220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR  274 (352)
T ss_dssp             HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            677788999999988888888 4444 4456667778888999999999999864

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=5.4e-30  Score=248.74  Aligned_cols=326  Identities=15%  Similarity=0.153  Sum_probs=235.3

Q ss_pred             hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (444)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~  144 (444)
                      +.+..+++..++..+|....+..                 +|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~   64 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVA-----------------IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF   64 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            35667777888888888777754                 4999999999999999999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhh
Q 013356          145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV  224 (444)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~  224 (444)
                      |||+++.++.++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|+++.++...+..+|..++|.
T Consensus        65 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  144 (485)
T TIGR00711        65 GTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPT  144 (485)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhc-------cccccccCCCCcccCCcccc
Q 013356          225 YGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS-------VSEGSEASNLNDHVSEDISD  297 (444)
Q Consensus       225 l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  297 (444)
                      +++++.++++||+.|++.++++++..++.++..|++++...  ++.+......       ...............+....
T Consensus       145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (485)
T TIGR00711       145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAAS--ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEIL  222 (485)
T ss_pred             cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccccc--CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Confidence            99999999999999999988877777666666666432111  1111000000       00000000000000000000


Q ss_pred             hhhhhhh-hcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhc
Q 013356          298 QASERSI-KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI  375 (444)
Q Consensus       298 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  375 (444)
                      ....... ..........+.++... ..+++++|.++...+..++.....+...+++|.|+++..|.++... .......
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~  301 (485)
T TIGR00711       223 ILSITGLVAIIAFVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVG  301 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            0000000 00000000000001111 1356788888888888888888888888999999999888887666 5555666


Q ss_pred             ccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 013356          376 VCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCL  415 (444)
Q Consensus       376 ~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  415 (444)
                      ++.+++.++.|++.||+++|     +....+..+..+...
T Consensus       302 ~~~~~~~~~~g~l~~r~~~~-----~~~~~g~~~~~~~~~  336 (485)
T TIGR00711       302 LAPMLSSPIAGRMGDKIDPR-----KLVTIGLILYAVGFY  336 (485)
T ss_pred             HHHHHHHHHHHHHHhhcCcH-----HHHHHHHHHHHHHHH
Confidence            88899999999999999987     444444444444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=2.9e-30  Score=242.46  Aligned_cols=278  Identities=17%  Similarity=0.200  Sum_probs=216.4

Q ss_pred             HHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH
Q 013356           73 INMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV  152 (444)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~  152 (444)
                      .++..++++..++..                 +|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus         3 ~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   65 (379)
T TIGR00881         3 GYAAYYLVRKNFALA-----------------MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI   65 (379)
T ss_pred             hhhHHHHhHHhhhhh-----------------hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH
Confidence            345666666666654                 488999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh-hHHHHhhc
Q 013356          153 GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY-VYGGVVGS  231 (444)
Q Consensus       153 ~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~l~~~l~~  231 (444)
                      +.++.+++.++.+++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++ .+++.+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        66 GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 57777777


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchh
Q 013356          232 HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESR  311 (444)
Q Consensus       232 ~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (444)
                      ..+||+.|++.+++.++..++.+++.||+++....++.++...     .          +.+.   ..++.+        
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~---~~~~~~--------  199 (379)
T TIGR00881       146 LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-----E----------EPDG---DAEKKE--------  199 (379)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-----c----------cccc---cccccc--------
Confidence            8899999999988877776666666666543221111100000     0          0000   000000        


Q ss_pred             hhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhh
Q 013356          312 FLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILD  390 (444)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d  390 (444)
                        +.........+.++++|.++...+..+........+..+.|.|+++..+.+.... .......++.+++.++.+++.|
T Consensus       200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  277 (379)
T TIGR00881       200 --EELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD  277 (379)
T ss_pred             --ccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence              0000001123456788888888888888888888888999999988888876555 5556667888999999999999


Q ss_pred             hhccc
Q 013356          391 QMGAT  395 (444)
Q Consensus       391 r~~~~  395 (444)
                      |..++
T Consensus       278 r~~~~  282 (379)
T TIGR00881       278 KLFNG  282 (379)
T ss_pred             HHcCC
Confidence            87544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=1.4e-29  Score=238.52  Aligned_cols=247  Identities=17%  Similarity=0.195  Sum_probs=207.0

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.+|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++.+++.++..++++++.+++.|++.|+
T Consensus        26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  105 (385)
T TIGR00710        26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAF  105 (385)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            44589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (444)
                      +.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.++.+||+.|++.++..++..+..++..||+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       106 GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999988999999999988877776666666565332


Q ss_pred             CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (444)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      ...+   .+ .                                           ++..+.+++.+++|.++...+.....
T Consensus       186 ~~~~---~~-~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (385)
T TIGR00710       186 YEAR---IQ-I-------------------------------------------STYFETFLLLLKSKMFWGYALIYGAS  218 (385)
T ss_pred             Cccc---CC-H-------------------------------------------HHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            1100   00 0                                           00012234567888888877777777


Q ss_pred             HHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ....+....+.|.++++.++.++... .......++.+++.++.+++.||+++|+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  273 (385)
T TIGR00710       219 FGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS  273 (385)
T ss_pred             HHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            77777778888998887788876555 4455666788899999999999999874

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=2.6e-29  Score=236.20  Aligned_cols=240  Identities=10%  Similarity=-0.030  Sum_probs=194.9

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |++|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++|++.++++|+++|+
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gi  109 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGV  109 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHh
Confidence            33599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      +.+...+....++.+++| ++|+++++++..+..+|..+++.+++++.++. +||+.+.+.++..++..+..++..++.+
T Consensus       110 g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (393)
T PRK09705        110 GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREV  188 (393)
T ss_pred             HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999997 88999999999999999999999999988775 8999887766654433322222211111


Q ss_pred             cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (444)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +     ++++..                                               ...++.+++++.+...+..++
T Consensus       189 ~-----~~~~~~-----------------------------------------------~~~~~~l~~~~~~~l~~~~~~  216 (393)
T PRK09705        189 A-----SSHKTT-----------------------------------------------TTPVRVVFTPRAWTLGVYFGL  216 (393)
T ss_pred             c-----cccCCC-----------------------------------------------cCCcccccCHhHHHHHHHHHH
Confidence            0     000000                                               001233466777777777777


Q ss_pred             HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ....++....|.|.++++ +|.+.... ....+..++.++++++.+++.||.++|+
T Consensus       217 ~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~  271 (393)
T PRK09705        217 INGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK  271 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH
Confidence            777788888999999987 68876655 5566777889999999999999999873

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=1.5e-29  Score=239.94  Aligned_cols=292  Identities=13%  Similarity=0.077  Sum_probs=210.6

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~  141 (444)
                      ..++.+..+++.++..+++...++..                 .|.+++++|+++.+.+++.+++.++..+++++.|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~   71 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALV-----------------LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWG   71 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788889999999998888765                 4889999999999999999999999999999999999


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      ||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++
T Consensus        72 Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~  151 (405)
T TIGR00891        72 DRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV  151 (405)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchh
Q 013356          222 GYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA  299 (444)
Q Consensus       222 ~~~l~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (444)
                      ++.+++.+.+..+  ||+.|++.+++.++.. +.....||++++..++++.+...                  +...+..
T Consensus       152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~  212 (405)
T TIGR00891       152 AAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVR------------------TMVDILY  212 (405)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhh------------------hHHHHHh
Confidence            9999999887766  9999988765544433 33334465432111000000000                  0000000


Q ss_pred             hhhhhhcccchhhhhhhccccccchhcc--cCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcc
Q 013356          300 SERSIKSIGESRFLNQLSQFSQDTKVLL--QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (444)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  376 (444)
                      ..+...       +...++.....+...  +.+.+...................+.|.|+.+..|.+.... .......+
T Consensus       213 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  285 (405)
T TIGR00891       213 GGEHRI-------ANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNI  285 (405)
T ss_pred             ccchhh-------hhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            000000       000000000011101  11112223333333344445566788888887778876655 55566678


Q ss_pred             cchhhhhhhhhhhhhhcccc
Q 013356          377 CGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       377 ~~~~~~~~~g~l~dr~~~~~  396 (444)
                      +.+++.++.+++.||++||+
T Consensus       286 ~~~~g~~~~g~l~dr~g~~~  305 (405)
T TIGR00891       286 GAIVGGCVFGFLGDWLGRRK  305 (405)
T ss_pred             HHHHHHHHHHHHHHHhCchh
Confidence            88999999999999999984

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.97  E-value=1.9e-29  Score=238.79  Aligned_cols=247  Identities=13%  Similarity=0.096  Sum_probs=200.3

Q ss_pred             cccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          104 SGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       104 ~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      .+|.+.+++|.|+.+.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|+++|++
T Consensus        35 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~  114 (406)
T PRK15402         35 GMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIG  114 (406)
T ss_pred             chHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      .+...+....++.|++|+++|.+..++......+|..++|.+++.+.++.+||+.|++.+++.++..+..++..||+++.
T Consensus       115 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (406)
T PRK15402        115 LCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR  194 (406)
T ss_pred             hhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            99888899999999999999999999998888899999999999998889999999998888777666555555654221


Q ss_pred             CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (444)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      ..+  +.+                                            .++..++.+.++++|.++...+..++..
T Consensus       195 ~~~--~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (406)
T PRK15402        195 VGE--KLS--------------------------------------------LKELGRDYKLVLKNRRFVAGALALGLVS  228 (406)
T ss_pred             ccc--ccc--------------------------------------------HHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            100  000                                            0001223456778888888777766666


Q ss_pred             HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ........+.|.++.+.++.++... .......++.+++.++.+++.||+++|+
T Consensus       229 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~  282 (406)
T PRK15402        229 LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS  282 (406)
T ss_pred             HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            6666666778888877778876554 3333444577888999999999998873

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=3.7e-29  Score=237.41  Aligned_cols=308  Identities=18%  Similarity=0.204  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (444)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G  145 (444)
                      .+..+++.+++..+++...+..                 +|.+++++|+|+.+.+++.+.+.+++.+++++.|++.||+|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~-----------------~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G   89 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS   89 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3455556666666666555543                 49999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchh
Q 013356          146 PFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG  222 (444)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~  222 (444)
                      ||+++.++.++++++.+++   +++++++.++++|+++|+|.|...+..+.++.|+.++++|...+++.+..+.+|..++
T Consensus        90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g  169 (438)
T PRK10133         90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA  169 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999875   5689999999999999999999999999999998877777778999999999999999


Q ss_pred             hhHHHHhh-cc-------------------------cchhHHHHHHHHHHH-HHHHHHHhhccCcccCCCCCccccchhh
Q 013356          223 YVYGGVVG-SH-------------------------LNWRYAFWGEAILML-PFAVLAFVIKPLQLKGFAPAESGKAQVV  275 (444)
Q Consensus       223 ~~l~~~l~-~~-------------------------~~wr~~f~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~  275 (444)
                      +.+++.+. ..                         .+||++|+....+.. +..++.+...||.+.     ++.+..  
T Consensus       170 ~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~~~~--  242 (438)
T PRK10133        170 VVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNHSDA--  242 (438)
T ss_pred             HHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cccccc--
Confidence            99887543 00                         256666764433322 222222222233110     000000  


Q ss_pred             hccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccc
Q 013356          276 ASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPK  355 (444)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (444)
                                                             +..+..++.++++++|.++...+..++......+...|.+.
T Consensus       243 ---------------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~  283 (438)
T PRK10133        243 ---------------------------------------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIR  283 (438)
T ss_pred             ---------------------------------------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                   00001122346678888887777777777777777778888


Q ss_pred             cc-cccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013356          356 AG-YNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG  433 (444)
Q Consensus       356 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (444)
                      |+ ++.+|.++... .......++.++|+++++++.||+++|     +.+..+.++.+..++.....+..+ .+..+.+.
T Consensus       284 ~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  357 (438)
T PRK10133        284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHV-GLIALTLC  357 (438)
T ss_pred             HHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHH
Confidence            85 56678887766 555666788899999999999999988     334444444444433333333222 23334444


Q ss_pred             HHHHhhhcc
Q 013356          434 ELLVFATQV  442 (444)
Q Consensus       434 ~~~~~~~~~  442 (444)
                      +++....+|
T Consensus       358 glg~~~i~P  366 (438)
T PRK10133        358 SAFMSIQYP  366 (438)
T ss_pred             HHHHHHHHH
Confidence            555555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=4.2e-29  Score=234.42  Aligned_cols=261  Identities=12%  Similarity=0.021  Sum_probs=200.7

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+.+++|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|++.|++.
T Consensus        26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  105 (377)
T TIGR00890        26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV  105 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +..++.....+.|++| ++|+++.++...+.++|..+++++.+.+.+..+||+.|++.++++++..+..+++.+++++..
T Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  184 (377)
T TIGR00890       106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL  184 (377)
T ss_pred             HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc
Confidence            9888888889999987 789999999999999999887777777777789999999999988887777666655432210


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                      .++++ + .                      .                 .    ...+.++.++++.++...+..+....
T Consensus       185 ~~~~~-~-~----------------------~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (377)
T TIGR00890       185 IKTNI-E-V----------------------S-----------------V----KDYTVWEMLRTPQFWVLYLSFFLNAV  219 (377)
T ss_pred             cccCc-c-c----------------------c-----------------h----hhhhHHHHHcCccHHHHHHHHHHHhH
Confidence            00000 0 0                      0                 0    00112345677777776666665555


Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (444)
                      .......+.+.+.++ .+.+.... .......++.++++++.+++.||++||+     .+..+.++..+..+..
T Consensus       220 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~~~~  287 (377)
T TIGR00890       220 SGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----TMSIVFGISAVGMAAM  287 (377)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHH
Confidence            555555566666554 56665444 5556677888999999999999999883     3444444444443333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=3.1e-29  Score=240.14  Aligned_cols=285  Identities=12%  Similarity=0.049  Sum_probs=209.3

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      |.++..+++.....+.++..++..                 +|.+.++ |+|+.+.+++.+.+.+++.+++++.|+++||
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr   89 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR   89 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            445556666677777776666543                 3888888 9999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhchh----hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (444)
                      +|||+++.++.++.+++.+++++++    +++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+.++|.
T Consensus        90 ~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  169 (452)
T PRK11273         90 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  169 (452)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999887753    788899999999999998888888899999999999999999999999986


Q ss_pred             c-hhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356          220 A-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (444)
Q Consensus       220 ~-~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (444)
                      . .+++++..+....+||+.|++.+++.++..++.+++.||+++....++..+ . +.+.    ....    + +     
T Consensus       170 ~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~-~~~~----~~~~----~-~-----  233 (452)
T PRK11273        170 GLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEE-Y-KNDY----PDDY----N-E-----  233 (452)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhh-h-hhcc----cccc----c-c-----
Confidence            4 455544333334589999999988877777777777777554321111100 0 0000    0000    0 0     


Q ss_pred             hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhccc
Q 013356          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (444)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  377 (444)
                       +++ ++        ...++..  .+.+++++.+|...+..++.....+....|+|.|+++..|++.... ....+..++
T Consensus       234 -~~~-~~--------~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~  301 (452)
T PRK11273        234 -KHE-QE--------LTAKQIF--MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA  301 (452)
T ss_pred             -ccC-CC--------ccHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence             000 00        0000000  1235688899988888888887888888999999998777775544 444556678


Q ss_pred             chhhhhhhhhhhhhhcc
Q 013356          378 GIVGTISGGFILDQMGA  394 (444)
Q Consensus       378 ~~~~~~~~g~l~dr~~~  394 (444)
                      .+++.++.|+++||+++
T Consensus       302 ~~~g~~~~G~l~dr~~~  318 (452)
T PRK11273        302 GIPGTLLCGWMSDKVFR  318 (452)
T ss_pred             HHHHHHHHHHHHHHHcc
Confidence            88899999999999954

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=4.5e-29  Score=238.06  Aligned_cols=277  Identities=16%  Similarity=0.134  Sum_probs=205.1

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      ++.+..+.+.++..+++.....+.                 +|.+++++|+|+.+.+++.+++.++..+++++.|+++||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr   79 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYI-----------------MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK   79 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677788888888888777654                 488999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  223 (444)
                      +|||+++.++.++.+++.++.+++++++.++++|+++|++.+..++....++.|++|+++|+++.++...+..+|.++++
T Consensus        80 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~  159 (426)
T PRK12307         80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAA  159 (426)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhh
Q 013356          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (444)
Q Consensus       224 ~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (444)
                      .+.+.+.+.++||+.|++..+..++ .+......||++++..         .+.. .+    .   +..           
T Consensus       160 ~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~---------~~~~-~~----~---~~~-----------  210 (426)
T PRK12307        160 YFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEE---------AKLS-GK----G---KHS-----------  210 (426)
T ss_pred             HHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHH---------hhhh-cc----c---ccc-----------
Confidence            9999998889999999875433222 1111111233211100         0000 00    0   000           


Q ss_pred             hhcccchhhhhhhccccccchhcccCcchhhHHHHHH---HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccch
Q 013356          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI---AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGI  379 (444)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  379 (444)
                        .       ....+.....++.++++.++.......   ......+.+..++|.|+++ .|.+.... .......++.+
T Consensus       211 --~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~  280 (426)
T PRK12307        211 --Q-------SAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTV  280 (426)
T ss_pred             --c-------cchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence              0       000000112345567776654433222   2223333456788888877 46665444 44456667889


Q ss_pred             hhhhhhhhhhhhhcccc
Q 013356          380 VGTISGGFILDQMGATI  396 (444)
Q Consensus       380 ~~~~~~g~l~dr~~~~~  396 (444)
                      ++.++.+++.||++||+
T Consensus       281 ~g~~~~g~l~dr~~~~~  297 (426)
T PRK12307        281 LGNIVWGLCADRIGLKK  297 (426)
T ss_pred             HHHHHHHHHHHHhccHH
Confidence            99999999999999873

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=8.9e-29  Score=235.70  Aligned_cols=271  Identities=12%  Similarity=0.056  Sum_probs=193.1

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccc-cccccc--ccCccchhHHH-----HHHHHHHHHHhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGS-GIQGDF--KLNNFQDGVLS-----SAFMVGLLVASP  135 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~i~~~~--~~s~~~~~~~~-----s~~~l~~~~~~~  135 (444)
                      ++.....++.++++++|...++...                 | .+.+++  +.++. .+++.     ++.+++..++++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~   82 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITA-----------------ALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGV   82 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHH
Confidence            4577778889999999999887542                 3 244555  56665 45553     345567789999


Q ss_pred             hhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHH--------HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHH
Q 013356          136 IFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW--------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW  207 (444)
Q Consensus       136 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~  207 (444)
                      +.|+++||+|||+++.++.++++++++++++++|++        .++++|+++|++.|..++....++.|++|+++|++.
T Consensus        83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~  162 (438)
T PRK09952         83 VFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFY  162 (438)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHH
Confidence            999999999999999999999999999999999987        588999999999999999999999999999999999


Q ss_pred             HHHHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccc
Q 013356          208 LSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  279 (444)
Q Consensus       208 ~~~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  279 (444)
                      .+....+..+|.+++..+...+.        ..+|||++|++.+++.++. +......||++++...+++.+        
T Consensus       163 ~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~--------  233 (438)
T PRK09952        163 SSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA--------  233 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc--------
Confidence            99999999999988887766554        2579999999887765432 222223344332110000000        


Q ss_pred             cccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHH-HHHHHHHHHHHHHhhcccccc
Q 013356          280 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL-GYIAYNFVIGAYSYWGPKAGY  358 (444)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  358 (444)
                       +         .+                     .+    ....+.++++|+.+.... ..+......+....|.|.|++
T Consensus       234 -~---------~~---------------------~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  278 (438)
T PRK09952        234 -A---------AK---------------------KR----IPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYST  278 (438)
T ss_pred             -c---------cc---------------------cc----CCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0         00                     00    000112335555554433 344555667777889999988


Q ss_pred             ccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          359 NIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       359 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      +..|.+.... .......+..+++.++.|+++||++||+
T Consensus       279 ~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~  317 (438)
T PRK09952        279 QNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR  317 (438)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence            7777776433 3333445666778889999999999984

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=6.7e-29  Score=232.02  Aligned_cols=286  Identities=15%  Similarity=0.103  Sum_probs=211.8

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-----hHHHHHHHHHH
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-----DFWSIAICRML  179 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----s~~~l~~~r~l  179 (444)
                      +|.+..+++.++.+.+++.+++.++..++++++|+++||+|||+++..+.++..++.++..+.+     +++.++++|++
T Consensus        22 ~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  101 (365)
T TIGR00900        22 LPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGI  101 (365)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            3778888999999999999999999999999999999999999999999999999998888887     99999999999


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      +|++.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.+++.+.++.|||+.|++.++..++..+..++..++
T Consensus       102 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  181 (365)
T TIGR00900       102 LAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIP  181 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999998999999998877665554444333221


Q ss_pred             cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHH
Q 013356          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (444)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      ..+.   +++++..                       +                +..++..+..+..+++|.++...+..
T Consensus       182 ~~~~---~~~~~~~-----------------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T TIGR00900       182 ELAA---SEIQALS-----------------------N----------------AVLRDTREGIKFVLKNPLLRTLLLLA  219 (365)
T ss_pred             cCCC---ccccccc-----------------------h----------------hHHHHHHhHHHHHHcCcHHHHHHHHH
Confidence            1100   0000000                       0                00001112344567888888877777


Q ss_pred             HHHHHHHHHHH-hhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356          340 IAYNFVIGAYS-YWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (444)
Q Consensus       340 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (444)
                      +.......... .+.|.+.++.++.+.... .......++.+++.++.+++.||.+++     +....+..+..+.+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~  294 (365)
T TIGR00900       220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM-----ALMTGAIFVIGLAILVV  294 (365)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-----HHHHHHHHHHHHHHHHH
Confidence            76666666665 788888887677776555 455566778889999999999999887     33444343333333333


Q ss_pred             HHhhh-HHHHHHHHHHHHHHH
Q 013356          418 FCLSS-LYGFLALFTVGELLV  437 (444)
Q Consensus       418 ~~~~~-~~~~~~~~~~~~~~~  437 (444)
                      ...+. .+...+...+.+++.
T Consensus       295 ~~~~~~~~~~~~~~~~~g~~~  315 (365)
T TIGR00900       295 GLTPPNFPLFLVLWFAIGVGY  315 (365)
T ss_pred             HhhchhHHHHHHHHHHHHHHH
Confidence            33332 444444444444333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=9.6e-29  Score=231.08  Aligned_cols=255  Identities=16%  Similarity=0.140  Sum_probs=194.1

Q ss_pred             ccc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHh
Q 013356          105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGV  182 (444)
Q Consensus       105 l~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~  182 (444)
                      +|. +++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+.++.++..++.+++++++ +++.+++.|+++|+
T Consensus        24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~  103 (366)
T TIGR00886        24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGI  103 (366)
T ss_pred             hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            474 8999999999999999999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc----------ccchhHHH-HHHHHHHHHHHH
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAF-WGEAILMLPFAV  251 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~----------~~~wr~~f-~~~~~~~~~~~~  251 (444)
                      +.+ ..+....++.|++|+++|+++.++......+|..+++.+++.+..          +.+||+.| +..+++..+..+
T Consensus       104 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  182 (366)
T TIGR00886       104 AGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPAL  182 (366)
T ss_pred             hch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Confidence            865 456678999999999999999999998888888888877766543          34899999 444555555555


Q ss_pred             HHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcc
Q 013356          252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  331 (444)
Q Consensus       252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      +.+++.+|.++...++++.+..       +         ....    .+    +        +    ..+...+.+++|.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~----~~----~--------~----~~~~~~~~~~~~~  226 (366)
T TIGR00886       183 LIFFVGADTPPGKPATGKLSFK-------G---------ARWS----VG----T--------G----ALGDQLKVFRDRH  226 (366)
T ss_pred             HHHHhcccCCcccccchhcccc-------c---------cccc----cc----c--------h----hHHHHHHHHhccc
Confidence            5555555543321100000000       0         0000    00    0        0    0012335567888


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++...+..+......+....+.|.|+++.++.++... ....+..+..++++++.+++.||+++|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  292 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR  292 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch
Confidence            8888777777777777888899999988888877655 4556667788899999999999999974

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=1.9e-28  Score=230.98  Aligned_cols=243  Identities=15%  Similarity=0.140  Sum_probs=197.2

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+++.++++++.+++.|+++|++.
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~  105 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA  105 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+||+.|++.+++.++..++.++..||+++..
T Consensus       106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  185 (392)
T PRK10473        106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPAR  185 (392)
T ss_pred             hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999999999999999999999999888899999999998887777776666666643211


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                      . ++ .. .                                             ..+..++.++++.++...+...+...
T Consensus       186 ~-~~-~~-~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (392)
T PRK10473        186 A-PA-AS-S---------------------------------------------KPRENSESLLNRFFLSRLVITTLSVT  217 (392)
T ss_pred             c-CC-cc-c---------------------------------------------hHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            0 00 00 0                                             00111234566666655554444444


Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      ....+..+.|.++++.+|.+.... .......++.+++.++.+++.||+++|
T Consensus       218 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~  269 (392)
T PRK10473        218 VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            455566677888877778876555 444566778889999999999999987

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=2.1e-28  Score=227.73  Aligned_cols=260  Identities=14%  Similarity=0.040  Sum_probs=204.3

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccc-ccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d  142 (444)
                      ++.+....+..++.+.....++..                 .+.+.+ ++|+|++|.+++.+++.+++.++.++.|++.|
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l-----------------~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D   95 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAV-----------------TVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP   95 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666643                 266655 89999999999999999999999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356          143 SHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (444)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (444)
                      |+|.|+++.++.+++++.+++.+++     +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++
T Consensus        96 r~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~  174 (462)
T PRK15034         96 IFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL  174 (462)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence            9999999999999999999999987     8999999999999998 778899999999999999999999999877777


Q ss_pred             ccchhhhHHHHhh-----c-------------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccc
Q 013356          218 GVALGYVYGGVVG-----S-------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVS  279 (444)
Q Consensus       218 G~~~~~~l~~~l~-----~-------------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  279 (444)
                      |..++++++..+.     .             ..+||...++..++.++..++.+++.++.+.     ++..        
T Consensus       175 G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~~--------  241 (462)
T PRK15034        175 GVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRAS--------  241 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----cccC--------
Confidence            7776666554322     1             3458888888888877777776666544211     0000        


Q ss_pred             cccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccc
Q 013356          280 EGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN  359 (444)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (444)
                                                              .++....+|+|+.|.+++.+++.+..+.++.+++|.|+++
T Consensus       242 ----------------------------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~  281 (462)
T PRK15034        242 ----------------------------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT  281 (462)
T ss_pred             ----------------------------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                    1233467899999999999999999999999999999988


Q ss_pred             cccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .+.  .... ....+..+...+.++++|+++||+|+++
T Consensus       282 ~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~  317 (462)
T PRK15034        282 QFP--DVNILRLAFFGPFIGAIARSVGGAISDKFGGVR  317 (462)
T ss_pred             HcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH
Confidence            653  2222 2233345678888999999999999983

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=4.5e-29  Score=236.06  Aligned_cols=299  Identities=17%  Similarity=0.247  Sum_probs=211.8

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      ++.+..+++..+..+++....+..                 +|.+.+++|.++.+.+++.+.+.++..+++++.|+++||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~   78 (398)
T TIGR00895        16 WRAIILSFLIMLMDGYDLAAMGFA-----------------APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR   78 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            445566666667776666655543                 388999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  223 (444)
                      +|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|..+++
T Consensus        79 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  158 (398)
T TIGR00895        79 IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGG  158 (398)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhh
Q 013356          224 VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERS  303 (444)
Q Consensus       224 ~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (444)
                      .+++.+.+..+||+.|++.+++.++..++.+++.||+++...++++++.....++  .......  +..+...+    +.
T Consensus       159 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~----~~  230 (398)
T TIGR00895       159 FLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNA--IAPQMQA--EAQSALPE----QK  230 (398)
T ss_pred             HHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHH--HHHhccc--cccccccc----cc
Confidence            9999999999999999998777776666666667776543211111000000000  0000000  00000000    00


Q ss_pred             hhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhh
Q 013356          304 IKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGT  382 (444)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  382 (444)
                      .+.       +..++..+...+..+.+..+...+..++.....+....+.|.+. +..+.+.... .......++.+++.
T Consensus       231 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  302 (398)
T TIGR00895       231 ATQ-------GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGS  302 (398)
T ss_pred             ccc-------chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            000       00000111111111223344444455555666677777888444 4467765554 55566678889999


Q ss_pred             hhhhhhhhhhccc
Q 013356          383 ISGGFILDQMGAT  395 (444)
Q Consensus       383 ~~~g~l~dr~~~~  395 (444)
                      ++.+++.||+++|
T Consensus       303 ~~~~~l~~~~~~~  315 (398)
T TIGR00895       303 IIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHhhcchH
Confidence            9999999999987

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.96  E-value=3e-29  Score=246.50  Aligned_cols=289  Identities=19%  Similarity=0.299  Sum_probs=217.0

Q ss_pred             HHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 013356           68 VIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF  147 (444)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr  147 (444)
                      +.+++..+...+..+.++..                 ++.++++|+++..+.|++.+.+.++++++.++.|+++||+|||
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~-----------------l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~   98 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSS-----------------LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP   98 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-----------------chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc
Confidence            44444556555555555543                 4999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhchh---------------------------------------------------hHHHHHHH
Q 013356          148 RLIGVGLSVWTFATAGCGSSF---------------------------------------------------DFWSIAIC  176 (444)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~~~---------------------------------------------------s~~~l~~~  176 (444)
                      +++.+++++++++++++++.+                                                   .+..++++
T Consensus        99 ~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (633)
T TIGR00805        99 IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVS  178 (633)
T ss_pred             eEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHH
Confidence            999999999999999988763                                                   25567899


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc----------------------c
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL----------------------N  234 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~----------------------~  234 (444)
                      |+++|+|.+..++...+++.|++|+++|++++++++.+..+|.++|+++++++.+.+                      +
T Consensus       179 r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGa  258 (633)
T TIGR00805       179 QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGA  258 (633)
T ss_pred             HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHH
Confidence            999999999999999999999999999999999999999999999999999887543                      2


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhh
Q 013356          235 WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLN  314 (444)
Q Consensus       235 wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (444)
                      ||..|++.+++.++..+.. +++|+..+....+.+.+... .+.   .+..       +   +..         ......
T Consensus       259 Wwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~~~~~~~~~~-~~~---~~~~-------~---~~~---------~~~~~~  314 (633)
T TIGR00805       259 WWIGFLICGGVALLTSIPF-FFFPKALPKEGKRVNVDVHE-TEK---LEKS-------E---DKS---------RKKNSD  314 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HhCccccCCcccccchhhhh-hhc---cccc-------c---ccc---------chhhhh
Confidence            7778888888877766554 44455433211100000000 000   0000       0   000         000001


Q ss_pred             hhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcc-cchhhhhhhhhhhhhh
Q 013356          315 QLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV-CGIVGTISGGFILDQM  392 (444)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~l~dr~  392 (444)
                      ..++..+.++.++++|.++...+..++.....+++..|+|.|+++.++.++..+ .+.....+ +.+++.+++|+++||+
T Consensus       315 ~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~  394 (633)
T TIGR00805       315 ITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF  394 (633)
T ss_pred             hHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee
Confidence            122334556788999999999999999999999999999999999999987666 33333333 5678999999999999


Q ss_pred             cccch
Q 013356          393 GATIS  397 (444)
Q Consensus       393 ~~~~~  397 (444)
                      +.+.+
T Consensus       395 ~~~~~  399 (633)
T TIGR00805       395 KLNVK  399 (633)
T ss_pred             cccHH
Confidence            87654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=1.7e-28  Score=233.83  Aligned_cols=268  Identities=15%  Similarity=0.123  Sum_probs=193.5

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHH-HHH-----HHHHHHHhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLS-SAF-----MVGLLVASPIF  137 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~-s~~-----~l~~~~~~~~~  137 (444)
                      ++....++++.+++++|+..++..                 .|.+.+|++.++.+.+.+. +..     .++..+++++.
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~   76 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGFY-----------------ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVL   76 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            447788889999999999999876                 4999999999887765443 322     22334789999


Q ss_pred             hhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHH--------HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHH
Q 013356          138 ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS--------IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLS  209 (444)
Q Consensus       138 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~  209 (444)
                      |+++||+|||+.++.+.++++++.++++++++++.        ++++|+++|++.+...+....++.|++|+++|+++++
T Consensus        77 G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~  156 (434)
T PRK15075         77 GAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS  156 (434)
T ss_pred             HHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence            99999999999999999999999999999999874        6889999999999999999999999999999999999


Q ss_pred             HHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccc
Q 013356          210 MFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEG  281 (444)
Q Consensus       210 ~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  281 (444)
                      +...+..+|..+++.+++.+.        +.+|||++|++..+...+    .+ +.++.++     |.++.... ..   
T Consensus       157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~----~~-~~~~~~~-----e~~~~~~~-~~---  222 (434)
T PRK15075        157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF----IF-LIRRSLE-----ETEEFLAR-KH---  222 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH----HH-HHHHhcC-----CCHHHHHh-hh---
Confidence            999988888888888777652        468999999975433211    11 1121111     10000000 00   


Q ss_pred             cccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhH-HHHHHHHHHHHHHHHhhcccccccc
Q 013356          282 SEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVN-VLGYIAYNFVIGAYSYWGPKAGYNI  360 (444)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  360 (444)
                        +                             .+.   .+..+...+++..+.. .+..+.....++....|.|.|+++.
T Consensus       223 --~-----------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~  268 (434)
T PRK15075        223 --R-----------------------------PSM---REIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV  268 (434)
T ss_pred             --c-----------------------------ccc---ccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              0                             000   0001112233333322 3333445566777888999999987


Q ss_pred             ccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          361 YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       361 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .|.+..+. .......++.+++.++.|+++||++||+
T Consensus       269 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~  305 (434)
T PRK15075        269 LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP  305 (434)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            88876655 4455666788899999999999999884

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.96  E-value=1.4e-28  Score=230.77  Aligned_cols=251  Identities=18%  Similarity=0.209  Sum_probs=207.0

Q ss_pred             ccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356          101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (444)
Q Consensus       101 ~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~  180 (444)
                      +.|.+|.+.+++|+|+.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~   89 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLH   89 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      |++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+...+..||+
T Consensus        90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102         90 GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999999999999889999999998888777766666666664


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      ++...   +++..                                          .++..+++++.+++|.++...+..+
T Consensus       170 ~~~~~---~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        170 LPKER---RQPFH------------------------------------------LRTTIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             Ccccc---cCCCC------------------------------------------hHHHHHHHHHHHcChHHHHHHHHHH
Confidence            32110   00000                                          0000123345677787777766666


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      +.....+.+..+.|.++.+.+|.++... .......++.+++.++.+++.||+++|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  261 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN  261 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence            6666667777778888877778876655 4555666788899999999999999884

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.9e-28  Score=216.09  Aligned_cols=242  Identities=16%  Similarity=0.155  Sum_probs=209.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH---HHHHHHHHHhHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF---WSIAICRMLVGV  182 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~---~~l~~~r~l~G~  182 (444)
                      +.+.+|+++|+.|.+++.++..+...+..++.|.+.||||.|++..++.++..+-.+..+++.++   +++++.+.+.|+
T Consensus        38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~  117 (417)
T COG2223          38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL  117 (417)
T ss_pred             hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence            67889999999999999999999999999999999999999999999999999999999988654   499999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      + |..+.++..++++++||+++|.++|+.. ..++|..+...++..+....+   ||..-.+..++.++..++.++...+
T Consensus       118 ~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         118 A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8 5588999999999999999999999999 999999999999999988888   9999999888888888888887765


Q ss_pred             cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHH
Q 013356          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (444)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      .+..+...++..                                                ...++.++++++.|.+++.+
T Consensus       196 ~p~~r~~~~~~~------------------------------------------------~~~~~~v~~~~~~W~lsllY  227 (417)
T COG2223         196 VPEHRASVKPQL------------------------------------------------PAQLKAVFSNKDTWLLSLLY  227 (417)
T ss_pred             Chhhhccccccc------------------------------------------------hhHHHHHhcCcchHHHHHHH
Confidence            433211111000                                                02345677899999999999


Q ss_pred             HHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      +..+..+.++..++|.|++++++.+.... .......+.+.+.+..+|+++||+|.++.
T Consensus       228 ~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv  286 (417)
T COG2223         228 FATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV  286 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH
Confidence            99999999999999999999999997776 66667778888999999999999999843

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=5.4e-29  Score=241.44  Aligned_cols=301  Identities=16%  Similarity=0.183  Sum_probs=197.0

Q ss_pred             HHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccC--------ccchhHHHHHHHHHHHHHhhhhhhh
Q 013356           69 IFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLN--------NFQDGVLSSAFMVGLLVASPIFASL  140 (444)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s--------~~~~~~~~s~~~l~~~~~~~~~g~l  140 (444)
                      ++.+..++..++...++..                 +|.+..+++.+        ..+.+++.+++.++..++++++|++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l   94 (481)
T TIGR00879        32 IAAIGGLMFGYDTGVIGGA-----------------LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWL   94 (481)
T ss_pred             HHHHHHHhcccccchhhhh-----------------hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHh
Confidence            3344445566666666543                 37777777766        8899999999999999999999999


Q ss_pred             hhhcCCcchhHHHHHHHHHHHHhhhch---hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc
Q 013356          141 AKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT  217 (444)
Q Consensus       141 ~dr~Grr~~l~~~~~~~~~~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  217 (444)
                      +||+|||++++++.++..++.+++.+.   .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+
T Consensus        95 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  174 (481)
T TIGR00879        95 SDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITF  174 (481)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHH
Confidence            999999999999999999999998554   45668999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhHH---HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCc
Q 013356          218 GVALGYVYG---GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSED  294 (444)
Q Consensus       218 G~~~~~~l~---~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (444)
                      |.++++.++   ..+.+..+||+.|++.++..++.. +..+++||+++....+++.+...+...+  .....  ..+.+ 
T Consensus       175 G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-  248 (481)
T TIGR00879       175 GILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLAR--LRGTS--GEDKE-  248 (481)
T ss_pred             HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHH--HhCCC--CCcHH-
Confidence            999999998   666677899999999666555444 4445567765432111111110000000  00000  00000 


Q ss_pred             ccchhhhhhhhcccchhhhhhhccccccchhcc---cCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hh
Q 013356          295 ISDQASERSIKSIGESRFLNQLSQFSQDTKVLL---QEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MF  370 (444)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  370 (444)
                      ..+...........+.   +..+..........   +.+.++...+..+......+...++.|.++++ .|.+.... ..
T Consensus       249 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~  324 (481)
T TIGR00879       249 LLDELELIDIKRSIEK---RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLV  324 (481)
T ss_pred             HHHHHHHHHHHHHHHH---hhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHH
Confidence            0000000000000000   00000011111111   23344444444444444445556677777665 56665444 55


Q ss_pred             hhhhcccchhhhhhhhhhhhhhcccc
Q 013356          371 GGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       371 ~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .....++.+++.++++++.||++||+
T Consensus       325 ~~~~~~~~~~~~~~~g~l~d~~~~~~  350 (481)
T TIGR00879       325 SIIVGAVNFAFTFVAIFLVDRFGRRP  350 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            55667788899999999999999984

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00898 2A0119 cation transport protein

Probab=99.96  E-value=1.6e-28  Score=239.21  Aligned_cols=291  Identities=14%  Similarity=0.112  Sum_probs=200.2

Q ss_pred             cccccccccccC---ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356          104 SGSGIQGDFKLN---NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (444)
Q Consensus       104 ~l~~i~~~~~~s---~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~  180 (444)
                      ..|.+.+|+|++   +.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.++++|++.+++.|++.
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  190 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV  190 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            358899999998   88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      |++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+.+   ||+.|++.+++.++..+.. +++||+
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            999999999999999999999999999999999999999999998877654   9999999998877666555 567888


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      +++...+++.++..+...+  ..+.+......+......+  ++..       ..  ......++++++|.++...+...
T Consensus       267 p~~l~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~~--~~~~-------~~--~~~~~~~~l~~~~~~~~~~~~~~  333 (505)
T TIGR00898       267 PRWLISQGRIEEALKILQR--IAKINGKKLPAEVLSLSLE--KDLS-------SS--KKQYSFLDLFRTPNLRKTTLCLM  333 (505)
T ss_pred             hHHHHHCCCHHHHHHHHHH--HHHHcCCCCCHHHHhhhhh--hhhh-------hc--cCCCcHHHHhCChHHHHHHHHHH
Confidence            8764333322211111000  0000000000000000000  0000       00  00124556778887776655544


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (444)
                      ...+......+.++.+..+ .+.+.  .....+..+..+++.++.+++.||+|||     ..+....++.++.++....
T Consensus       334 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~l~dr~grr-----~~~~~~~~~~~~~~l~~~~  404 (505)
T TIGR00898       334 MLWFTTAFSYYGLVLDLGN-LGGNI--YLDLFISGLVELPAKLITLLLIDRLGRR-----YTMAASLLLAGVALLLLLF  404 (505)
T ss_pred             HHHHHHHHHHHHHhccccc-cCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHHHH
Confidence            4333332222223333322 33332  2233344567888999999999999998     4455555554444444433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=1.1e-27  Score=228.71  Aligned_cols=287  Identities=13%  Similarity=0.046  Sum_probs=212.9

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      ++.+..+.+.+...+.++..+...                 +|.+++ +|+++++.+++.+++.++..+++++.|+++||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   87 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALA-----------------MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR   87 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhh-----------------hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc
Confidence            345556666677777776665543                 266765 59999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhch----hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGSS----FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (444)
                      +|||+++..+.++.+++.++.++.    ++++.+.+.|++.|++.+..++....++.|++|+++|++++++.+.+..+|.
T Consensus        88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~  167 (438)
T TIGR00712        88 SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGG  167 (438)
T ss_pred             cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHh
Confidence            999999999999999998887764    5678888999999999999889899999999999999999999999999999


Q ss_pred             chhhhHHHHh-hcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356          220 ALGYVYGGVV-GSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (444)
Q Consensus       220 ~~~~~l~~~l-~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (444)
                      .+++.+.+.. ..+.+||+.|++.++++++..++.+++.||+++....++..+..    .    +....   ..+     
T Consensus       168 ~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~---~~~-----  231 (438)
T TIGR00712       168 GIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR----N----DYPDD---YNE-----  231 (438)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc----c----ccccc---ccc-----
Confidence            9998877654 34578999999999888887777777777754321111100000    0    00000   000     


Q ss_pred             hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhccc
Q 013356          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (444)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  377 (444)
                        +.+.+        .+.++..  .+..++++.++...+..++.....+++..|.|.|+++..|.+.... ....+..+.
T Consensus       232 --~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~  299 (438)
T TIGR00712       232 --KAEQE--------LTAKEIF--MQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYA  299 (438)
T ss_pred             --ccccc--------cchHHHH--HHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHH
Confidence              00000        0000000  1235788889888887777777778888999999998778876555 445566678


Q ss_pred             chhhhhhhhhhhhhhcccc
Q 013356          378 GIVGTISGGFILDQMGATI  396 (444)
Q Consensus       378 ~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++++.+++|++.||+++++
T Consensus       300 ~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       300 GIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHHHHHHHHHHHhccCc
Confidence            8999999999999996543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=2.7e-28  Score=236.73  Aligned_cols=187  Identities=19%  Similarity=0.125  Sum_probs=156.5

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccc-----cccCccchhHHHHHHHHHHHHHhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGD-----FKLNNFQDGVLSSAFMVGLLVASPI  136 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~-----~~~s~~~~~~~~s~~~l~~~~~~~~  136 (444)
                      ..++.+.++.++.+..++|...++...                 |.+.++     .+.+..+.+++.+.+.++..+++++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~   75 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVT-----------------KMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLF   75 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            334566777888899999998887652                 445443     2445667899999999999999999


Q ss_pred             hhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh------HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHH
Q 013356          137 FASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM  210 (444)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  210 (444)
                      +|+++||+|||+++.+++++..++.++++++++      ++.++++|+++|++.|...+..+.++.|++|+++|++++++
T Consensus        76 ~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~  155 (502)
T TIGR00887        76 FGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAA  155 (502)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHH
Confidence            999999999999999999999999999888766      78999999999999999999999999999999999999999


Q ss_pred             HhhhcccccchhhhHHHHhhc-----------------------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCC
Q 013356          211 FYMCIPTGVALGYVYGGVVGS-----------------------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAP  266 (444)
Q Consensus       211 ~~~~~~~G~~~~~~l~~~l~~-----------------------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~  266 (444)
                      .+....+|.++++.++..+..                       .++||++|.+.++++++..+ ..+++||+|++...
T Consensus       156 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~  233 (502)
T TIGR00887       156 VFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTAD  233 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHH
Confidence            999999999999988765431                       24799999888777665444 34567999987543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10504 putative transporter; Provisional

Probab=99.96  E-value=1.4e-27  Score=230.51  Aligned_cols=313  Identities=13%  Similarity=0.096  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 013356           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN  145 (444)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G  145 (444)
                      .+..++++.++..++...+...                 +|.+.+++|.++.+.+++.+.+.++..++.+++|+++||+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g   73 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTA-----------------LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG   73 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455666777777777666543                 48999999999999999999999999999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356          146 PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (444)
Q Consensus       146 rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l  225 (444)
                      ||++++.+.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.+
T Consensus        74 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  153 (471)
T PRK10504         74 VRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL  153 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhcc------cc-ccccCCCCcccCCcccch
Q 013356          226 GGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV------SE-GSEASNLNDHVSEDISDQ  298 (444)
Q Consensus       226 ~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~  298 (444)
                      ++.+.++.|||+.|++......+..+......|+.+...   .+.+.......      .. ..+...............
T Consensus       154 ~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (471)
T PRK10504        154 GGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQT---RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGL  230 (471)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccC---CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHH
Confidence            999999999999999988777666666655555432211   11110000000      00 000000000000000000


Q ss_pred             ---------hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-
Q 013356          299 ---------ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-  368 (444)
Q Consensus       299 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  368 (444)
                               ....+++.         ..+...+ .++++||.++......++..........+.|.|++...|.++... 
T Consensus       231 ~~~~~~~~~~~~~~~~~---------~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  300 (471)
T PRK10504        231 VAVGVVALLLYLLHARN---------NNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAG  300 (471)
T ss_pred             HHHHHHHHHHHHHHHhc---------CCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence                     00000000         0001111 246789999888887887777777777888999887778776555 


Q ss_pred             hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356          369 MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (444)
Q Consensus       369 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  413 (444)
                      .......++.+++.++.+++.||+++|     +.+..+.++..+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~l~~r~g~~-----~~~~~~~~~~~~~  340 (471)
T PRK10504        301 LMMIPMVLGSMGMKRIVVQVVNRFGYR-----RVLVATTLGLALV  340 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHH
Confidence            444444566677778899999999988     4444444444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=5.7e-28  Score=234.08  Aligned_cols=183  Identities=17%  Similarity=0.206  Sum_probs=154.7

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccccc--------ccCccchhHHHHHHHHHHHHHh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF--------KLNNFQDGVLSSAFMVGLLVAS  134 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~--------~~s~~~~~~~~s~~~l~~~~~~  134 (444)
                      ..+..+...++.+..++|...++..                 +|.+++++        +.++.+.+++.+++.++..+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~   72 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG   72 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHh-----------------HHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHH
Confidence            3456677777888999988887754                 36666655        8889999999999999999999


Q ss_pred             hhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch------------hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC
Q 013356          135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP  202 (444)
Q Consensus       135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  202 (444)
                      +++|+++||+|||++++++.++++++.++++++            ++++.++++|+++|++.|...+...++++|++|++
T Consensus        73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (479)
T PRK10077         73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH  152 (479)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence            999999999999999999999999998887763            23567889999999999999999999999999999


Q ss_pred             chhHHHHHHhhhcccccchhhhHHHHhh--------cccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          203 QKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       203 ~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      +|++++++.+.+..+|.++++.+++.+.        +.+|||+.|++.+++.++..+. .+++||++++
T Consensus       153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~  220 (479)
T PRK10077        153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRY  220 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHH
Confidence            9999999999999999999888776543        3579999999988877776544 4556887654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.96  E-value=3.7e-27  Score=225.38  Aligned_cols=260  Identities=13%  Similarity=0.087  Sum_probs=192.7

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHH-HHHHhHhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVG  183 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~-~r~l~G~~  183 (444)
                      +|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|+++|++
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~  121 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLG  121 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            38899999999999999999999999999999999999999999999999999999999999999998875 57999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      .+...+....++.++++ ++|+++.++.+.+..+|..++|++++.+.+.+|||+.|++.+++.++..+..+++.|+....
T Consensus       122 ~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~  200 (455)
T TIGR00892       122 LAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ  200 (455)
T ss_pred             chhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            99877777888899996 89999999999999999999999999999999999999999988776655544443332110


Q ss_pred             CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (444)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      ...+++.+     +   ..+.... .       ++....  .      ..+...+ ..+ .+++++|.++...+..++..
T Consensus       201 ~~~~~~~~-----~---~~~~~~~-~-------~~~~~~--~------~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~  254 (455)
T TIGR00892       201 RVSKSKSK-----E---GLPPDGS-T-------KKLSKK--S------TAEKINR-FLD-FSLFTHRGFLVYLSGNVIMF  254 (455)
T ss_pred             cccccccc-----c---cCCCCCc-c-------cccccc--c------hhhhhhh-hcc-hHHhcCchHHHHHHHHHHHH
Confidence            00000000     0   0000000 0       000000  0      0000000 111 24668888888888777777


Q ss_pred             HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhh
Q 013356          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQM  392 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~  392 (444)
                      ...+....++|.|+++ .+.+.... ....+.+++.++++++.+++.||.
T Consensus       255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777778888988876 57776555 555566778888889999999974

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=6.7e-28  Score=225.97  Aligned_cols=282  Identities=13%  Similarity=0.143  Sum_probs=226.9

Q ss_pred             ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhh
Q 013356          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEAS  186 (444)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~  186 (444)
                      ..++++|+.+.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++.-++.  +++.+++.|++||++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            568999999999999999999999999999999999999999999999999999987664  556789999999999999


Q ss_pred             hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (444)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (444)
                      .+|....+.+.|.|++||++..++..++..+|.+++-+++|++.+. +||+.+|++.++++++..++.+++..|+|.++.
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            9999999999999999999999999999999999999999999988 999999999999999988888777766555422


Q ss_pred             CCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHH
Q 013356          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (444)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (444)
                      .- ..++.+..+.....                   +           ...+....+++++++++.+|...++.+....+
T Consensus       225 ~i-s~~El~~I~~~k~~-------------------~-----------~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~  273 (466)
T KOG2532|consen  225 NI-SEKELKYIEKGKSE-------------------A-----------HVKKKPPVPYKAILTSPPVWAIWISAFGGNWG  273 (466)
T ss_pred             CC-CHHHHHHHHhcccc-------------------c-----------ccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHH
Confidence            11 11111110000000                   0           00000245678899999999999999999999


Q ss_pred             HHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHHHHHHHh
Q 013356          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI----SNAFKLLSAATFLGAISCLTAFCL  420 (444)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  420 (444)
                      .+.+..|+|.|+.+..+++.... .+++++.+...+..+++|.++||+.+|.    ..++..-.++....+++++.+.+.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            99999999999999999997666 7888999999999999999999987741    112233334444444444444444


Q ss_pred             h
Q 013356          421 S  421 (444)
Q Consensus       421 ~  421 (444)
                      +
T Consensus       354 ~  354 (466)
T KOG2532|consen  354 S  354 (466)
T ss_pred             C
Confidence            3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=2.5e-27  Score=222.97  Aligned_cols=304  Identities=16%  Similarity=0.152  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC
Q 013356           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (444)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr  146 (444)
                      +..+++.++..++.....++.                 +|.+++++|+|+.+.|++.+.+.+++.+++++.|++.||+||
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l-----------------~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~   67 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPM-----------------VPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSY   67 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            445556666666665555433                 599999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356          147 FRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (444)
Q Consensus       147 r~~l~~~~~~~~~~~~~~~~---~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  223 (444)
                      |+++.++.++++++.++...   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++
T Consensus        68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~  147 (410)
T TIGR00885        68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM  147 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988644   468999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhc--------------------------ccchhHHHHHHHHHHHHHHHHHHhh-ccCcccCCCCCccccchhhh
Q 013356          224 VYGGVVGS--------------------------HLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVA  276 (444)
Q Consensus       224 ~l~~~l~~--------------------------~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~  276 (444)
                      .+++.+..                          ..+||++|++.+++.++..++..+. .|+.+    ++++++ .   
T Consensus       148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~----~~~~~~-~---  219 (410)
T TIGR00885       148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALN----HSDAKQ-I---  219 (410)
T ss_pred             HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----cccccc-c---
Confidence            99887642                          1369999999988766655443322 12210    000000 0   


Q ss_pred             ccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccc
Q 013356          277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA  356 (444)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (444)
                                                               +...+.++++|+|.++..++..+++.........+++.|
T Consensus       220 -----------------------------------------~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y  258 (410)
T TIGR00885       220 -----------------------------------------SFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQY  258 (410)
T ss_pred             -----------------------------------------cchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                     000122355788888888888888877777788889998


Q ss_pred             ccccc-cCCcch-hhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 013356          357 GYNIY-HMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGE  434 (444)
Q Consensus       357 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (444)
                      .++.. +.+... .........+..+|+++++++.||+++|     +.+..+.+++++.+++....++... ...+.+.+
T Consensus       259 ~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~-----~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~g  332 (410)
T TIGR00885       259 AVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH-----KVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCS  332 (410)
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-----HHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence            87532 222211 1233344467789999999999999887     4555566666655555555444332 33444444


Q ss_pred             HHHhhhcc
Q 013356          435 LLVFATQV  442 (444)
Q Consensus       435 ~~~~~~~~  442 (444)
                      ++..+.+|
T Consensus       333 lf~s~~fp  340 (410)
T TIGR00885       333 AFMSLMFP  340 (410)
T ss_pred             HHHHHHHH
Confidence            55544444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=6.5e-27  Score=219.48  Aligned_cols=240  Identities=10%  Similarity=0.048  Sum_probs=182.3

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH-HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      .+++++|.|+.+.|++.+.+.++..+.+++.|+++||+||||.++. +.++..++.+++++++|++.+++.|+++|.+.+
T Consensus        23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  102 (375)
T TIGR00899        23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFAS  102 (375)
T ss_pred             HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhh
Confidence            4678999999999999999999999999999999999999887654 566667777888999999999999999998888


Q ss_pred             hhhhccHHHhhhcCCCCchhHH--HHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          186 SFISLAAPFIDDNAPVPQKTAW--LSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      ...+...++..|+.|+++|++.  .++...+.++|.++++.+++.+.+.++||+.|++.+++.++..++.++++||.+++
T Consensus       103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            8888888899999887777654  57888888999999999999999889999999999888777777666666764322


Q ss_pred             CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (444)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      ..+++  +                                                ..+.++.++++.++......+...
T Consensus       183 ~~~~~--~------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  212 (375)
T TIGR00899       183 APGAL--T------------------------------------------------RLEVRGLLASRDTRLLFVACTLMW  212 (375)
T ss_pred             ccccc--C------------------------------------------------cchhhhhhcCcchHHHHHHHHHHH
Confidence            11000  0                                                000112345566655555444444


Q ss_pred             HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ........+.|.++++..|.++... ..........+++.++.+++.||+++|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~  266 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR  266 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence            4455556678888877778776554 3333434556777889999999999884

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=2.3e-27  Score=223.74  Aligned_cols=242  Identities=14%  Similarity=0.111  Sum_probs=188.9

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.+|.+.+++|.|+.+.+++.+.+.++..++++++|+++||+|||+++.++.++..++.++..++++++.+++.|++.|+
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  108 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGL  108 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (444)
                      +.+...+....+..|.+++++|+++.++...+..+|..++|.+++.+.++.|||+.|++.+++.++..++..++.||+++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99988888888999999999999999999999999999999999999988999999999888777666555555566432


Q ss_pred             CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (444)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      ...+    + .                                            +..+.++..+++|.++...+..+..
T Consensus       189 ~~~~----~-~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  219 (394)
T PRK11652        189 ADAR----R-T--------------------------------------------RVLASYRTLLSNRRFNCYLLMLIGT  219 (394)
T ss_pred             cccc----h-h--------------------------------------------HHHHHHHHHHcChHHHHHHHHHHHH
Confidence            1100    0 0                                            0012234556777777666555555


Q ss_pred             HHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhc
Q 013356          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMG  393 (444)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~  393 (444)
                      ......+..+.+.++++.+|.+.... .......++.+++.++.+++.||.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  271 (394)
T PRK11652        220 LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS  271 (394)
T ss_pred             HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566677778887777776544 3333333455555555666666655

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=2.9e-27  Score=223.59  Aligned_cols=242  Identities=18%  Similarity=0.182  Sum_probs=192.7

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.+|.+++++|.++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.++++++++++.+++.|+++|+
T Consensus        27 p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  106 (401)
T PRK11043         27 PAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAV  106 (401)
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (444)
                      +.+...+...+++.|++|++++++..+.......+|..++|.+++++.+++|||+.|++.+++.++..+..+++ ++.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~  185 (401)
T PRK11043        107 GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL-KPSKK  185 (401)
T ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence            98888888889999999999999999999988999999999999999999999999999988877766555444 33211


Q ss_pred             CCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHH
Q 013356          263 GFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAY  342 (444)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (444)
                      .    ++.++.                                              ..+.++.+++|.++...+.....
T Consensus       186 ~----~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  215 (401)
T PRK11043        186 A----RKQSQD----------------------------------------------ALTFKQLLKSKTYLGNVLIFAAC  215 (401)
T ss_pred             c----cccchH----------------------------------------------HHHHHHHHcChhHHHHHHHHHHH
Confidence            1    000000                                              01234556777776655555555


Q ss_pred             HHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          343 NFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ...++.+..+.|.++++ .|.+.... .......++.+++.++.+++.||+++|+
T Consensus       216 ~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~  269 (401)
T PRK11043        216 SAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ  269 (401)
T ss_pred             HHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            55566677788888876 67776554 3333444667788888899999988764

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=1.5e-26  Score=218.45  Aligned_cols=247  Identities=14%  Similarity=0.183  Sum_probs=189.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---c-hhhHHHHHHHHHHhH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVG  181 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~s~~~l~~~r~l~G  181 (444)
                      +.+.+|+|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.   + .++++.+++.|+++|
T Consensus        37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G  116 (402)
T TIGR00897        37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRG  116 (402)
T ss_pred             HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHH
Confidence            556688999999999999999999999999999999999999999999999988876542   3 358889999999999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc-chhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV-ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      ++.+...+.....+.+++|+++|++++|+.+.+.++|. ++++++++.+.+.+||+..++......++..++.+++.++.
T Consensus       117 ~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (402)
T TIGR00897       117 LGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDI  196 (402)
T ss_pred             cchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            99988888888889999999999999999999999996 58999999998888977666655444333333334443432


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      ++    +++.++.                                        ++..+..+.++.++++|.++...+..+
T Consensus       197 ~~----~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T TIGR00897       197 FT----PQHMQTR----------------------------------------EKFSELGKAATILFTNPNVLLGGMVRI  232 (402)
T ss_pred             CC----cccccCC----------------------------------------cchhhHHHHHHHHHcChhHHHHHHHHH
Confidence            11    0000000                                        000001122345778899988888787


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      +.....+.+.++.|.|+++ .|.+.... .......++..++.+..|++.||++||+.
T Consensus       233 ~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  289 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNT  289 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence            7778888888999999866 78876655 44456668889999999999999998753

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=2e-26  Score=214.18  Aligned_cols=239  Identities=14%  Similarity=0.083  Sum_probs=189.3

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.+|.+++++|.|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++++.+++.|++.|+
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~   99 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGV   99 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Confidence            55699999999999999999999999999999999999999999999999999988888877 77899999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      +.+...+..+.++.|++| ++|+++.++.+.+.++|..+++.+++.+.++.  +||+.|.+.+++.++..   ..+.|+.
T Consensus       100 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~---~~~~~~~  175 (355)
T TIGR00896       100 GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL---LAWIPQV  175 (355)
T ss_pred             HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHhhhh
Confidence            999988888999999987 78999999999999999999999998887664  39999887765543322   1223432


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      ++..   ++.+..                                        .     ....++.+|+|.++...+..+
T Consensus       176 ~~~~---~~~~~~----------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       176 RRRV---AANQTT----------------------------------------T-----RLTPVRIWRSPLAWQVTVFFG  207 (355)
T ss_pred             cccc---CCCCCC----------------------------------------C-----CCCCchhhcCHhHHHHHHHHH
Confidence            2110   000000                                        0     011234567788887777667


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      +....++....|+|.|+++ .|.+.... .......++.++++++.|++.||+++|
T Consensus       208 ~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            7777778888899999987 57776555 556667788999999999999999654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=1.2e-26  Score=225.78  Aligned_cols=167  Identities=16%  Similarity=0.258  Sum_probs=153.5

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLA  141 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~  141 (444)
                      ..++.+..+++.+++..++...++..                 +|.+.+++|+|+.+.+++.+.+.+++.+++++.|+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~   79 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLV-----------------LTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMG   79 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557777888888888888877754                 4889999999999999999999999999999999999


Q ss_pred             hhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356          142 KSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       142 dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      ||+|||+++..+.++.+++.++.++++|++.+++.|++.|++.+..++....++.|++|+++|+++.++...+..+|..+
T Consensus        80 dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (496)
T PRK03893         80 DRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVV  159 (496)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhcccchhHHHHHHHHH
Q 013356          222 GYVYGGVVGSHLNWRYAFWGEAIL  245 (444)
Q Consensus       222 ~~~l~~~l~~~~~wr~~f~~~~~~  245 (444)
                      ++.+++.+.++++||+.|++..+.
T Consensus       160 ~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        160 AAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999999999999999875443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=2.9e-26  Score=215.30  Aligned_cols=244  Identities=13%  Similarity=0.088  Sum_probs=180.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      +.+.+|++.++.+.+++.+.+.+++.++++++|+++||+|||++++.+.++.++++++++++++.   ++.|+++|++.+
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999999999998888777664   788999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (444)
                      ...|...+++.|++|+++|+++.++.+....+|.++||.+++++.+. .|+..+.+.+...++. ++..+.+||.+++..
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~  181 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRP  181 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccc
Confidence            99999999999999999999999999999999999999999999874 4777777666554333 333455566432111


Q ss_pred             CCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHH
Q 013356          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (444)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (444)
                      +++.+. .                                        ...++..+..+.++++|.+.......++....
T Consensus       182 ~~~~~~-~----------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  220 (393)
T PRK11195        182 GQSWNP-I----------------------------------------ALLRDFFHACRVLWRDKLGRFSLAGTTLFWGA  220 (393)
T ss_pred             ccCCCH-H----------------------------------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            000000 0                                        00001111223556677666554444444444


Q ss_pred             HHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          346 IGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      .....+..|.++++.+|.++... .......++.+++.+..+++.||.+++
T Consensus       221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~  271 (393)
T PRK11195        221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL  271 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            45555666777777778877666 455566677788888888888876665

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=5.5e-26  Score=214.83  Aligned_cols=143  Identities=15%  Similarity=0.111  Sum_probs=128.7

Q ss_pred             ccc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--------hhHHHHHH
Q 013356          105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------FDFWSIAI  175 (444)
Q Consensus       105 l~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~s~~~l~~  175 (444)
                      +|. +++++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++        .+++.+++
T Consensus        38 l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (399)
T PRK05122         38 LPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLL  117 (399)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHH
Confidence            354 678999999999999999999999999999999999999999999999888877665543        25778999


Q ss_pred             HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHH
Q 013356          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILML  247 (444)
Q Consensus       176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~  247 (444)
                      .|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+.+++|||+.+++.+++.+
T Consensus       118 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        118 GRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             HHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999887766544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=1.6e-26  Score=224.33  Aligned_cols=283  Identities=15%  Similarity=0.178  Sum_probs=201.4

Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhh
Q 013356          118 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDD  197 (444)
Q Consensus       118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~  197 (444)
                      +.+|+.+.+.++..+++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|....+.+.|++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhh
Q 013356          198 NAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVA  276 (444)
Q Consensus       198 ~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  276 (444)
                      ..|++.||...+..+....+|..++..++....+. ++||..+.+..+++++..+. .++.||+|++..+..+..+....
T Consensus       170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~  248 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRS  248 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHH
Confidence            99999999999999999999999997666655443 58999999999999888887 77889999887653333222211


Q ss_pred             ccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccc
Q 013356          277 SVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKA  356 (444)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (444)
                      .........+....+.+........+....  ...  ....+..+   +..+++.++...+..+.+..+.+...+|.+.+
T Consensus       249 l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~l~~---~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i  321 (513)
T KOG0254|consen  249 LKRLRGLSPEDVEVELELLKIKLLVEAEVA--EGK--ASWGELFS---PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI  321 (513)
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHHhhhcc--ccc--ccHHHhcC---cchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence            111111001110001111110000000000  000  00111111   23345566677777888888888888999999


Q ss_pred             ccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356          357 GYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (444)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  414 (444)
                      ++.. +.+........+.++..+++.+++.++.||+|||     .+++.+.....+..
T Consensus       322 f~~~-g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr-----~lll~s~~~m~~~~  373 (513)
T KOG0254|consen  322 FKSA-GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRR-----KLLLFGAAGMSICL  373 (513)
T ss_pred             HHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHhHHHHHHHH
Confidence            8774 4443224445566678888888999999999998     44555444444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=1e-25  Score=213.77  Aligned_cols=277  Identities=14%  Similarity=0.139  Sum_probs=193.2

Q ss_pred             ccccccccccCccc-----hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 013356          105 GSGIQGDFKLNNFQ-----DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (444)
Q Consensus       105 l~~i~~~~~~s~~~-----~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l  179 (444)
                      +|.+.+++|.+..+     .+++.+++.++..++++++|+++||+|||+++..+.++.+++.++..+.++++.+++.|++
T Consensus        37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (408)
T PRK09874         37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRAL  116 (408)
T ss_pred             HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            48888999988655     4888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      .|++.+ ..+....++.|++|+++|+++.++......+|..++|.+++.+.+..+||+.|++.+++.++..+..+++.||
T Consensus       117 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (408)
T PRK09874        117 LGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRE  195 (408)
T ss_pred             HHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999855 5677888999999999999999999999999999999999999988999999999988877776666666665


Q ss_pred             cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHH-HH
Q 013356          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV-LG  338 (444)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  338 (444)
                      .++...+++   ..                                         +    .++..+.+++++++... ..
T Consensus       196 ~~~~~~~~~---~~-----------------------------------------~----~~~~~~~~~~~~~~~~~~~~  227 (408)
T PRK09874        196 NFQPVSKKE---ML-----------------------------------------H----MREVVTSLKNPKLVLSLFVT  227 (408)
T ss_pred             Ccccccchh---hh-----------------------------------------H----HHHHHHhCcCCchHHHHHHH
Confidence            322110000   00                                         0    00111234555554432 22


Q ss_pred             HHHHHHHHHHHHhhccccccccccCCcc-h--h-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356          339 YIAYNFVIGAYSYWGPKAGYNIYHMSNA-D--M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (444)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  414 (444)
                      .+...........+.+.|..+..+.... .  . ....+..++.+++.+..|++.||+++|+     .+..+..+..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----~~~~~~~~~~~~~  302 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----ILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHHHHH
Confidence            2333333444455666676654332211 1  1 2223445667788888999999999884     3444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHHH
Q 013356          415 LTAFCLSSLYGFLALFTVGEL  435 (444)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~  435 (444)
                      +.....++.+..++...+.++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~g~  323 (408)
T PRK09874        303 IPMSFVQTPLQLGILRFLLGA  323 (408)
T ss_pred             HHHHHhccHHHHHHHHHHHHh
Confidence            333333444444333333333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.94  E-value=6.9e-26  Score=212.50  Aligned_cols=258  Identities=19%  Similarity=0.227  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC
Q 013356           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP  146 (444)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr  146 (444)
                      +..+++..++...+...+.+.                 +|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-----------------lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~   70 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTL-----------------VPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF   70 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHH-----------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            444555666666665655533                 499999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHH
Q 013356          147 FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG  226 (444)
Q Consensus       147 r~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~  226 (444)
                      |+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|++++++...+.++|..+|+.++
T Consensus        71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633         71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhc
Q 013356          227 GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  306 (444)
Q Consensus       227 ~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (444)
                      +.+.+...|+..+. .+...... +..++. +..++.   +++ ++                                  
T Consensus       151 ~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~---~~~-~~----------------------------------  189 (381)
T PRK03633        151 SKVSTELMSVLPWV-TGLVLAAI-LPLLFT-RILNQQ---AEN-HD----------------------------------  189 (381)
T ss_pred             hcccccccchHHHH-HHHHHHHH-HHHHHh-cccCCC---CCC-CC----------------------------------
Confidence            98876543333333 22221111 111111 111100   000 00                                  


Q ss_pred             ccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhh
Q 013356          307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISG  385 (444)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  385 (444)
                                   .++.++.+++|.++......+.....+.....++|.|+++ .|.+.... .......++.+++++..
T Consensus       190 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~  255 (381)
T PRK03633        190 -------------STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPI  255 (381)
T ss_pred             -------------CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence                         0112234566666655444444444555666788988876 57765544 44556667888999999


Q ss_pred             hhhhhhhcccc
Q 013356          386 GFILDQMGATI  396 (444)
Q Consensus       386 g~l~dr~~~~~  396 (444)
                      +++.||+++|+
T Consensus       256 g~l~dr~~~~~  266 (381)
T PRK03633        256 GRLADRFGRLL  266 (381)
T ss_pred             HHHHHHcCcHH
Confidence            99999999873

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=3.9e-25  Score=208.17  Aligned_cols=153  Identities=14%  Similarity=0.144  Sum_probs=140.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      +.+++++|+|+.++|++.+.+.++..+.+++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      ...+...+++.|++|+++|++++++......+|..+||.+++.+. .++||+.|++.++..++..++..+..||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            888999999999999999999999999999999999999999998 6899999999887776665555455454

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=2.6e-25  Score=209.04  Aligned_cols=240  Identities=16%  Similarity=0.109  Sum_probs=182.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      +.+++++|+|..++|++.+.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++++.++++|++.|.+.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            55778899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (444)
                      ...+....+..|.+|+++|++++++.....++|.+++|++++++.+ .+||..|++.++..++..++..+..|+.++.. 
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~-  189 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI-  189 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccc-
Confidence            8888899999999999999999999999999999999999998875 79999999888877766555555555432211 


Q ss_pred             CCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHH
Q 013356          266 PAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFV  345 (444)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (444)
                         +++..                                        +     ..+.++.+++|.++...+..++....
T Consensus       190 ---~~~~~----------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~l~~~~  221 (395)
T PRK10054        190 ---ATETG----------------------------------------S-----VWSPSVLLQDKALLWFTCSGFLASFV  221 (395)
T ss_pred             ---ccchh----------------------------------------h-----hhhhhhhccCceehHHHHHHHHHHHH
Confidence               00000                                        0     00113557888888777766666555


Q ss_pred             HHHHHhhcccccccc--ccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          346 IGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       346 ~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      ...+..+.+.+....  .+.+.... .......+..+......+++.||.++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  274 (395)
T PRK10054        222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR  274 (395)
T ss_pred             HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch
Confidence            555555556655432  23333222 233333445555567778888988877

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=3.6e-25  Score=201.97  Aligned_cols=340  Identities=9%  Similarity=0.015  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccc-hhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356           66 LLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQ-DGVLSSAFMVGLLVASPIFASLAKSH  144 (444)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~g~l~dr~  144 (444)
                      +...+|+-.|+.-+ +.+++++                 .|.+.+|+|+|+.+ .|.+.++++.++++++++.|+++||+
T Consensus        28 ~~~~lC~fGF~~e~-R~n~s~a-----------------~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl   89 (511)
T TIGR00806        28 LVLYLCFYGFMAQF-RPGESFI-----------------TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL   89 (511)
T ss_pred             HHHHHHHHHHHHHh-hchHHHH-----------------HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444544444444 5666655                 38899999999999 99999999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhh
Q 013356          145 NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYV  224 (444)
Q Consensus       145 Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~  224 (444)
                      |.|+++.++.+.+++..++.++++++..+.+.|++.|++.|... ....++..|+|+++|+++.++..++..+|.+++++
T Consensus        90 G~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~  168 (511)
T TIGR00806        90 RYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSV  168 (511)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHhhcccchhHHHHHH--HHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhh
Q 013356          225 YGGVVGSHLNWRYAFWGE--AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASER  302 (444)
Q Consensus       225 l~~~l~~~~~wr~~f~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (444)
                      +++++ ..+|||+.+...  ...+..+.+++.+++|..++..--.+++.....  ...+.+....     +..  .   .
T Consensus       169 L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~--~~~~~~~~~~-----~~~--~---~  235 (511)
T TIGR00806       169 LGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGA--LPCELDQMVP-----GPG--G---K  235 (511)
T ss_pred             HHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccc--cccccccCCC-----CCc--c---c
Confidence            99994 468999765543  233334444455556643332111100000000  0000000000     000  0   0


Q ss_pred             hhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCc-chhhhhhhhcccchhh
Q 013356          303 SIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSN-ADMMFGGVTIVCGIVG  381 (444)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  381 (444)
                      ..+ ..+.......+..+++++...+||.++.-.+-+.+...+++.+.+|.-..-.+...-.+ -....-++..+.+.+.
T Consensus       236 ~~~-~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~  314 (511)
T TIGR00806       236 LED-YLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAIT  314 (511)
T ss_pred             cch-hhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHH
Confidence            000 00000112234456677777888888887777777777777776666554433322111 1112233444556677


Q ss_pred             hhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 013356          382 TISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ  441 (444)
Q Consensus       382 ~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (444)
                      .+..|++-.+..+. ..  ..+.+..++.+..++++...++.|..++...+.........
T Consensus       315 a~~ag~~~~~w~~~-~~--l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~fli  371 (511)
T TIGR00806       315 SFIAGFVNIRWARW-SK--LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLV  371 (511)
T ss_pred             HHHHHhhcCCchhh-HH--HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            78888875544221 11  33444555555666677777888888877777665544433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=4e-25  Score=208.40  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=125.1

Q ss_pred             ccc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---h-----chhhHHHHHH
Q 013356          105 GSG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---G-----SSFDFWSIAI  175 (444)
Q Consensus       105 l~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~-----~~~s~~~l~~  175 (444)
                      +|. +++|+|+|+.++|++.+++.++..++++++|+++||+|||+++..+.++..++.+..   +     ..++++.+++
T Consensus        38 l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (392)
T PRK12382         38 IPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVV  117 (392)
T ss_pred             hhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Confidence            464 678999999999999999999999999999999999999999999988777665432   2     1368899999


Q ss_pred             HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHH
Q 013356          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAIL  245 (444)
Q Consensus       176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~  245 (444)
                      +|+++|++.+...+...+++.|++|+++|++++++.+.+...|.+++|++++++.+++|||+.+.+..+.
T Consensus       118 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        118 GRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            9999999999988989999999999999999999999999999999999999999889999887765444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=2.6e-25  Score=192.00  Aligned_cols=321  Identities=13%  Similarity=0.112  Sum_probs=217.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      |...+.+|.+..+..++......|..+++..||.++|++|||+.+.+..+..++..++.++++|+..+++.|.+.|+|.|
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g  181 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG  181 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCC
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFA  265 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~  265 (444)
                      + .|...++-.|..|..+|...+=.. ..+.+|.+....++.....++||||.+...+.+..+ +....+++||+++...
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ESpRf~~  258 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYESPRFYL  258 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccCcchhh
Confidence            8 899999999999999998877666 999999999999999888899999999988865444 4445566799998765


Q ss_pred             CCccccchhhh---ccccccccCCCCc----ccCCcccchhhhhhhhcccchhhhhhhccccccchhccc---CcchhhH
Q 013356          266 PAESGKAQVVA---SVSEGSEASNLND----HVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ---EKVYVVN  335 (444)
Q Consensus       266 ~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  335 (444)
                      .+.++.+....   ....+..+.+...    .+++..+++.+....+.       ...++...+...++.   +++....
T Consensus       259 ~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~-------~a~ke~rg~~~nLlsp~lrkttlll  331 (528)
T KOG0253|consen  259 AKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKS-------SAAKEVRGGTTNLLSPKLRKTTLLL  331 (528)
T ss_pred             hcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhh-------ccccccccchHhhcChHHHHHHHHH
Confidence            44433322111   1111111111000    00000001111000010       111111111222221   1223333


Q ss_pred             HHHHHHHHHHHHHHHhhccccccccc--------------------cCCcchhhhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          336 VLGYIAYNFVIGAYSYWGPKAGYNIY--------------------HMSNADMMFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      ...++...+.+|+........++...                    ..+...+.-..+..+...+|.++.++++||+|||
T Consensus       332 w~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK  411 (528)
T KOG0253|consen  332 WRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK  411 (528)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch
Confidence            34455555666655544433333211                    0111122223455678999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Q 013356          396 ISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ  441 (444)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (444)
                           +.++.+.++.+++.+.+....+.....++++.+-+++.+.+
T Consensus       412 -----kTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f  452 (528)
T KOG0253|consen  412 -----KTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF  452 (528)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh
Confidence                 66888888888888877776665555556666665555543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.94  E-value=1.6e-24  Score=204.04  Aligned_cols=239  Identities=9%  Similarity=0.077  Sum_probs=166.7

Q ss_pred             cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchh-HHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      +.+.+++|+|++++|++.+...+ +..++.++.|+ +||+||||.+ ..+.++.+++.++.+++++++.+++.+.+.|..
T Consensus        40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (393)
T PRK15011         40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF  118 (393)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45788999999999999876655 55555555555 9999999875 456666677788888999999887666555544


Q ss_pred             hhhhhhccHHHhhhcCCCCch--hHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          184 EASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      .+...+....+..|+.++++|  +...++.+.+.++|.+++|++++.+.+++|||..|++.++..++..+..++..||.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            556788888888988876655  345688889999999999999999998899999999998888777776666667643


Q ss_pred             cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (444)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +....  +++..                                        +       ..++  +++..+........
T Consensus       199 ~~~~~--~~~~~----------------------------------------~-------~~~~--~~~~~~~~~~~~~~  227 (393)
T PRK15011        199 KELPL--ATGTL----------------------------------------E-------APRR--NRRDTLLLFVICTL  227 (393)
T ss_pred             CCCcc--ccccc----------------------------------------c-------cccc--ccccHHHHHHHHHH
Confidence            21100  00000                                        0       0000  11112222233333


Q ss_pred             HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .......+..+.|.|+++.++.+.... .......++.+++.++.|+++||+++|+
T Consensus       228 ~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~  283 (393)
T PRK15011        228 MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF  283 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            444455566788999888788876554 3334445667788999999999999984

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.1e-25  Score=208.46  Aligned_cols=264  Identities=15%  Similarity=0.155  Sum_probs=189.1

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhhhhhhhhccHHHh
Q 013356          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVGEASFISLAAPFI  195 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~s~~~l~~~r~l~G~~~g~~~~~~~~~i  195 (444)
                      .+.+.+++.+|.++|+++.|.++||+|||..+.++.++..++.++..+   .+++++++++|++.|+..|......+.|+
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            466788999999999999999999999999999999888888877665   57899999999999999999999999999


Q ss_pred             hhcCCCCchhHHHHHHhhhcccccchhhhHH--HHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCcccc-c
Q 013356          196 DDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGK-A  272 (444)
Q Consensus       196 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~  272 (444)
                      .|..|++.||....+.+.+..+|.+++..++  ..+.+.-.|++.+....+++++..+.. .++||+|++.-.++.++ +
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~Ll~~k~~~~~  220 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKYLLIKKGDEEE  220 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcchHHHHcCCHHH
Confidence            9999999999999999999999999998777  345556679999999988877766554 45699999865522222 1


Q ss_pred             hhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhccc-----CcchhhHHHHHHHHHHHHH
Q 013356          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ-----EKVYVVNVLGYIAYNFVIG  347 (444)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  347 (444)
                      ..+..+..  +...+++++.+...++.++++...           +...+++++++     ++.+..+++....+..+.+
T Consensus       221 A~~sl~~y--~G~~~~~~~~e~~~~e~~~~~~~~-----------~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~  287 (485)
T KOG0569|consen  221 ARKALKFY--RGKEDVEAEIEEMLREIEEEELEK-----------KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGIN  287 (485)
T ss_pred             HHHHHHHH--hCCCcchhHHHHHHHHHHHhcccc-----------ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcc
Confidence            11111110  111110111111111111110000           00112333334     4444555566666777778


Q ss_pred             HHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          348 AYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      ...+|...++.+ .|.+...+ ......++...+.++++.++.||+|||..
T Consensus       288 ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL  337 (485)
T KOG0569|consen  288 AIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL  337 (485)
T ss_pred             eeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            888888888877 57776655 66667778899999999999999999943

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.3e-24  Score=206.52  Aligned_cols=325  Identities=14%  Similarity=0.097  Sum_probs=229.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHH-HHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAI-CRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~-~r~l~G~~~  184 (444)
                      +.++++++.+.++++|+.++..-...+..++.+.+.||+|.|.+.++|.++.+++.++.+|++++|++++ .-++.|+|.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~  149 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL  149 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence            8899999999999999999999999999999999999999999999999999999999999999999877 568899999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      |+.+......+..+|+ ++|+.+.|+...+.++|.++-|.+..++.+.+|||+.+++.+.+.+-..+......|..++..
T Consensus       150 ~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~  228 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK  228 (509)
T ss_pred             hhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            9999999999998887 999999999999999999999999999999999999999999988777777766666444332


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccch-hhhhhhhcccchhhhhhhcccccc----chhcccCcchhhHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQ-ASERSIKSIGESRFLNQLSQFSQD----TKVLLQEKVYVVNVLGY  339 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  339 (444)
                      .+.+++........+.............+..... ...........+.. .+.......    -.++++++.++...+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~  307 (509)
T KOG2504|consen  229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDK-WRNSPLQAFLSMLDLSLLKDPKFLLLALSN  307 (509)
T ss_pred             chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcc-ccccchhhhhhhhhHHHHcCchHHHHHHHH
Confidence            2200000000000000000000000000000000 00000000000000 000000111    14678999999999999


Q ss_pred             HHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 013356          340 IAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (444)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (444)
                      .+...+++....++|.|..+ .+.+.... .+.++.++..++++++.|++.|+...++.   .+...+.+..++..+...
T Consensus       308 ~~~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~---~~~~~~ll~~gl~~~~~p  383 (509)
T KOG2504|consen  308 LFAYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL---VLFLLTLLIAGLARLFLP  383 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH---HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986 66766555 77778899999999999999999885432   334445555555555555


Q ss_pred             HhhhHHHHHHHHHHHHHH
Q 013356          419 CLSSLYGFLALFTVGELL  436 (444)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~  436 (444)
                      ..++.+..+....+.++.
T Consensus       384 ~~~~~~~l~~~~~~fG~~  401 (509)
T KOG2504|consen  384 FATTYVGLIVFSILFGFC  401 (509)
T ss_pred             HhccHHHHHHHHHHHHHH
Confidence            555555555444444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=2.1e-25  Score=211.89  Aligned_cols=277  Identities=10%  Similarity=0.007  Sum_probs=197.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~s~~~l~~~r~l~  180 (444)
                      |.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+.     .++++.+++.|++.
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  120 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD  120 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            7788888889999999999999999999999999999999999999988887777665432     56889999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      |++.+...+...+++.|++|+++|+++.++......+|..+||.+++.+.+..+||+.|++.++..++..++. +..|+.
T Consensus       121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~  199 (417)
T PRK10489        121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPAL  199 (417)
T ss_pred             HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            9999888888899999999999999999999999999999999999999888899999998877766554443 344543


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      +++..+++  +.                                           .++..+.++..+++|.++...+..+
T Consensus       200 ~~~~~~~~--~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  234 (417)
T PRK10489        200 PPPPQPRE--HP-------------------------------------------LRSLLAGFRFLLASPVVGGIALLGG  234 (417)
T ss_pred             CCCCcccc--cc-------------------------------------------hHHHHHHHHHHHcChHHHHHHHHHH
Confidence            22110000  00                                           0001112334566776655544443


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (444)
                      +.. ....+..+.|.|+++..|.+.... .......++.+++.++.+++.||.+++     +.+..+.++..+..+....
T Consensus       235 ~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~-----~~l~~~~~~~~~~~~~~~~  308 (417)
T PRK10489        235 LLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG-----LLMLLSTLGSFLAVGLFGL  308 (417)
T ss_pred             HHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc-----hHHHHHHHHHHHHHHHHHc
Confidence            332 245567788999988778776554 444556678888889999998875544     3344444444444433333


Q ss_pred             hhhHHHHHHHHHHHH
Q 013356          420 LSSLYGFLALFTVGE  434 (444)
Q Consensus       420 ~~~~~~~~~~~~~~~  434 (444)
                      .++.+...+...+.+
T Consensus       309 ~~~~~~~~~~~~~~g  323 (417)
T PRK10489        309 MPMWILAVLCLALFG  323 (417)
T ss_pred             cchHHHHHHHHHHHH
Confidence            444443333333333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.93  E-value=2.7e-25  Score=209.83  Aligned_cols=244  Identities=14%  Similarity=0.080  Sum_probs=177.0

Q ss_pred             cccccccc--cCccchhHHHHH-----HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHH-------
Q 013356          106 SGIQGDFK--LNNFQDGVLSSA-----FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFW-------  171 (444)
Q Consensus       106 ~~i~~~~~--~s~~~~~~~~s~-----~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~-------  171 (444)
                      +.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++.++++++++++       
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T TIGR00883        17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP   96 (394)
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHH
Confidence            45555543  445556655443     3334457899999999999999999999999999999999999875       


Q ss_pred             -HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh--------cccchhHHHHHH
Q 013356          172 -SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG--------SHLNWRYAFWGE  242 (444)
Q Consensus       172 -~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~wr~~f~~~  242 (444)
                       .++++|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+.        +.++||+.|++.
T Consensus        97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  176 (394)
T TIGR00883        97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVS  176 (394)
T ss_pred             HHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHH
Confidence             47889999999999999999999999999999999999999999999999998876653        357899999987


Q ss_pred             HHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhcccccc
Q 013356          243 AILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQD  322 (444)
Q Consensus       243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (444)
                      +++.++..+. ....||+++...++++.+                                              +..++
T Consensus       177 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~  209 (394)
T TIGR00883       177 AVLVLIGLYL-RRNLEETPVFEKAQEKHK----------------------------------------------KKRGP  209 (394)
T ss_pred             HHHHHHHHHH-HHhcCCChhHHHHHhccc----------------------------------------------cccCC
Confidence            7665443332 223344321100000000                                              00011


Q ss_pred             chhcccCcc--hhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          323 TKVLLQEKV--YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       323 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .++.++++.  ++......+......+....+.|.|+++..+.+.... .......++..++.++.+++.||++||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (394)
T TIGR00883       210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP  286 (394)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            223334443  6666666666667777788899999977777776555 4555666788899999999999999884

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.93  E-value=7.4e-25  Score=203.54  Aligned_cols=259  Identities=23%  Similarity=0.333  Sum_probs=215.4

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++..+.++++.+++.|++.|++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  101 (352)
T cd06174          22 LPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG  101 (352)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHccc
Confidence            37888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +...+....++.|++|+++|++..++.+....+|..+++.+++.+.+..+||+.+++.+++.++..+...+. +      
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------  174 (352)
T cd06174         102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL-L------  174 (352)
T ss_pred             ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H------
Confidence            999999999999999999999999999999999999999999999998899999999988877766555443 1      


Q ss_pred             CCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHH
Q 013356          265 APAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNF  344 (444)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (444)
                                                                                       |.++...+..+....
T Consensus       175 -----------------------------------------------------------------~~~~~~~~~~~~~~~  189 (352)
T cd06174         175 -----------------------------------------------------------------RLLLLLALAFFLLSF  189 (352)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence                                                                             335556666777778


Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhH
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSL  423 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (444)
                      .......+.|.+..+..+.+.... .......++..++.++.+++.||+++|+.    .+..+..+..+..+.....++.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~  265 (352)
T cd06174         190 GYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL----LLLIGLLLAALGLLLLALAPSL  265 (352)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHhccH
Confidence            888888899999988767776555 55667778899999999999999999831    4555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHhh
Q 013356          424 YGFLALFTVGELLVFA  439 (444)
Q Consensus       424 ~~~~~~~~~~~~~~~~  439 (444)
                      +...+...+.+.+...
T Consensus       266 ~~~~~~~~~~g~~~~~  281 (352)
T cd06174         266 ALLLVALLLLGFGLGF  281 (352)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            5454455444444443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=1.1e-24  Score=202.66  Aligned_cols=246  Identities=13%  Similarity=0.080  Sum_probs=184.3

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-----CCcch-hHHHHHHHHHHHHhhhch---hhHHHH
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSI  173 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~s~~~l  173 (444)
                      |++|.+.+|+|+|.+++|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.   .+.+.+
T Consensus         9 ~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l   86 (356)
T TIGR00901         9 NTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLL   86 (356)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence            34588999999999999999765 455554 99999999998     89996 567777777777777776   466677


Q ss_pred             HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc--------hhHHHHHHHHH
Q 013356          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--------WRYAFWGEAIL  245 (444)
Q Consensus       174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--------wr~~f~~~~~~  245 (444)
                      ....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+.++.+        ||..|++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~  166 (356)
T TIGR00901        87 AGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALL  166 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHH
Confidence            7788888998888899999999999999999999999999999999999999999988888        99999999887


Q ss_pred             HHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchh
Q 013356          246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  325 (444)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (444)
                      .++..+..++..||+.+.  ++++ +..                                          .++..+.+++
T Consensus       167 ~l~~~~~~~~~~~e~~~~--~~~~-~~~------------------------------------------~~~~~~~~~~  201 (356)
T TIGR00901       167 ILPGLLVTLFLAKEPQED--ASVP-KPL------------------------------------------TQAVLKPIRE  201 (356)
T ss_pred             HHHHHHHHHHhccCCCcc--cccc-hhH------------------------------------------HHHHHHHHHH
Confidence            777655555555553211  0000 000                                          0000122344


Q ss_pred             cccCcc---hhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhc-ccchhhhhhhhhhhhhhcccc
Q 013356          326 LLQEKV---YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-VCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       326 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++++|.   ++...+..++.....+....+.|.|+++ .|.+..+. ....... +..+++.++++++.||+++|+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  276 (356)
T TIGR00901       202 FFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY  276 (356)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            555554   6666666666777777888899999887 78877665 3333323 567789999999999999874

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.93  E-value=1.1e-24  Score=204.28  Aligned_cols=275  Identities=11%  Similarity=0.024  Sum_probs=199.5

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh----HHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI----GVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~  180 (444)
                      +|.+.+++|.|..++|++.+++.+...++++++|+++||+|||+..    .++..+..+  ..+..+++++.+++.|+++
T Consensus        27 l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~  104 (382)
T TIGR00902        27 FPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLF  104 (382)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHH
Confidence            5888899999999999999999999999999999999999985433    222222222  2344678999999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      |.+.+...+...++..++  +++|++..+......++|.+++|++++.+.+++|||..|++.++..+ ..+..+. .+++
T Consensus       105 ~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~-~~~~  180 (382)
T TIGR00902       105 ALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA-FMLIGFL-IKPT  180 (382)
T ss_pred             HHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH-HHHHHHH-cCCC
Confidence            999888888888887765  47889999999999999999999999999999999999988765532 2222222 2332


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      ++...+ ++++..                                            ...++.++++|+|+++...+..+
T Consensus       181 ~~~~~~-~~~~~~--------------------------------------------~~~~~~~~~l~~~~~~~~l~~~~  215 (382)
T TIGR00902       181 IPPKDA-IPEDES--------------------------------------------QGDSAFIALLKNPMNLRFLAAVC  215 (382)
T ss_pred             CCCCcc-cccccc--------------------------------------------ccchhHHHHHcChHHHHHHHHHH
Confidence            111000 000000                                            00112356789999999888888


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (444)
                      +.......+..+.|.|+++ .|.+.... .......++.+++.+..+++.||++.|     +.+..+.+...+.......
T Consensus       216 l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~-----~~l~~~~~~~~~~~~~~~~  289 (382)
T TIGR00902       216 LIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR-----DLLLISAIACVGRWAIIGA  289 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH-----HHHHHHHHHHHHHHHHHHh
Confidence            8888888888899999987 78887655 444455677788888888888888877     5566666666666666666


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 013356          420 LSSLYGFLALFTVGELL  436 (444)
Q Consensus       420 ~~~~~~~~~~~~~~~~~  436 (444)
                      .++.+..+....+-+..
T Consensus       290 ~~~~~~~~~~q~l~g~~  306 (382)
T TIGR00902       290 IEAFPLIFLLQILHCGT  306 (382)
T ss_pred             HhhHHHHHHHHHHHHHH
Confidence            66666555544444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.1e-23  Score=185.71  Aligned_cols=284  Identities=17%  Similarity=0.144  Sum_probs=229.8

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---chhhHHHHHHHHHHhH
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVG  181 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G  181 (444)
                      +|++++.|+++..+.+++...++.|+.+.+++.|++.+|+|+|+.+++|+.++++++.+..   -..+|..++++-++.|
T Consensus        36 ip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila  115 (422)
T COG0738          36 IPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILA  115 (422)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            4999999999999999999999999999999999999999999999999999999999984   5678999999999999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-------------------cchhHHHHHH
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------------------LNWRYAFWGE  242 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------------------~~wr~~f~~~  242 (444)
                      .|.+...+..+.+++...++++....+++.+..+++|.+++|++++.+..+                   ..|+++|...
T Consensus       116 ~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~  195 (422)
T COG0738         116 SGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLIL  195 (422)
T ss_pred             hhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHH
Confidence            999999999999999999999999999999999999999999999887652                   2488888888


Q ss_pred             HHHHHHHHHHHHhhc-cCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccc
Q 013356          243 AILMLPFAVLAFVIK-PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQ  321 (444)
Q Consensus       243 ~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (444)
                      +...+++.+...... |+..     ++.++..                                        +   ....
T Consensus       196 ~~~lvll~v~~~~~k~p~~~-----~~~~~~~----------------------------------------~---~~~~  227 (422)
T COG0738         196 AGLLVLLAVLILLSKLPDLQ-----VAAPSLG----------------------------------------A---SGSA  227 (422)
T ss_pred             HHHHHHHHHHHHhccCCcCC-----ccccccc----------------------------------------c---cccc
Confidence            777666555444332 2211     1100000                                        0   0000


Q ss_pred             cchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhH
Q 013356          322 DTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAF  400 (444)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~  400 (444)
                      ...+++++|+++...++.+++.........|++.|+.+..|.+..+. ...+...++.++|++++.++..|+...     
T Consensus       228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~-----  302 (422)
T COG0738         228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE-----  302 (422)
T ss_pred             hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----
Confidence            24577899999999999999999999999999999999878777666 667788899999999999999998887     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 013356          401 KLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQV  442 (444)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (444)
                      +.+....++..+.++.....++.+....+. +.+++....+|
T Consensus       303 k~Laf~a~~~ill~~~~~l~~g~v~~~~l~-~ig~F~simfP  343 (422)
T COG0738         303 KYLAFYALIAILLLLAVALIGGVVALYALF-LIGLFNSIMFP  343 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHH-HHHHHhHHHHH
Confidence            667888888888887777777755444433 33444455544

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.5e-24  Score=189.81  Aligned_cols=262  Identities=16%  Similarity=0.050  Sum_probs=200.9

Q ss_pred             cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (444)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~  189 (444)
                      ++.+-+.+++|++.+.+.+.+.+.+++.|.+.||+|+|-.+++|+++...+++++++.++|++++++|.+||+|.+...+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHhhhcCCCCc-hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCc
Q 013356          190 LAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  268 (444)
Q Consensus       190 ~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  268 (444)
                      .+.++++|.+|+++ |++++|+.-.+.++|..+||++||.+.+..|.+.+|++.++++++-.++.++.++.+.....  +
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~--~  256 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPD--S  256 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcc--c
Confidence            99999999999764 79999999999999999999999999999999999999999999888888877644221110  0


Q ss_pred             cccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHH
Q 013356          269 SGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA  348 (444)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (444)
                      ..+                                                ..++++++++|..+...............
T Consensus       257 ~~~------------------------------------------------~~~~~~Ll~dP~I~~~agai~~~n~~laf  288 (464)
T KOG3764|consen  257 TEQ------------------------------------------------GTPMWSLLMDPYILLIAGAITFSNSSLAF  288 (464)
T ss_pred             ccc------------------------------------------------CccHHHHHhCchHhhhhcchhhccchHHH
Confidence            000                                                12356778888888776655544444444


Q ss_pred             HHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 013356          349 YSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (444)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (444)
                      ..-.++.+..+....+.... .......+...++..+.|.+.||+++.+.   ...+.+.+.....+......++..
T Consensus       289 LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w---l~~~~gl~~~G~~~~~iP~~~~~~  362 (464)
T KOG3764|consen  289 LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW---LLSLGGLATVGVSSGPIPFATSIA  362 (464)
T ss_pred             hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH---HHHHHHHHHHHHHhchhHhhhhHH
Confidence            44444554555454333233 22234457889999999999999995422   334444444444444444444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=3.3e-24  Score=229.13  Aligned_cols=251  Identities=11%  Similarity=0.019  Sum_probs=184.0

Q ss_pred             cccccccccCc--cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~  180 (444)
                      +.+..+++.+.  ...+++.+++.+++.++++++|+++||+|||++++++.++..++.++.   ..+++++.++++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  113 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL  113 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            44555566543  447899999999999999999999999999999999887766555544   3457899999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc---------cchhHHHHHHHHHHHHHHH
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---------LNWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~---------~~wr~~f~~~~~~~~~~~~  251 (444)
                      |++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.+.         .+|++.+.+..+...+..+
T Consensus       114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1146)
T PRK08633        114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL  193 (1146)
T ss_pred             HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765         2355555544444333344


Q ss_pred             HHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcc
Q 013356          252 LAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKV  331 (444)
Q Consensus       252 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (444)
                      +..+.+|+.++.....++.+..                                        ....+..+.++.+++++.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~l~~~~~  233 (1146)
T PRK08633        194 IFAYRLPKVPAAAPEVFDKKKY----------------------------------------LFPKLLWRNLKLLRSDRV  233 (1146)
T ss_pred             HHHhcCcCCCCCCccccccccc----------------------------------------ccHHHHHHHHHHHhcCcH
Confidence            4444456543321110000000                                        000011223455677888


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhccccccccccCCcc-hh-hhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          332 YVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA-DM-MFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++...+..++.....+.+..++|.|+.+.+|.+.. .. .+.....++.+++.++.+++.||++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~  300 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG  300 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc
Confidence            88777777777777777788899999888888765 44 5555666788889999999999988763

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.92  E-value=3e-24  Score=201.37  Aligned_cols=274  Identities=14%  Similarity=0.059  Sum_probs=191.0

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc----chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF----RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLV  180 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~  180 (444)
                      +|.+.+|+|.|.+++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......+++++.+++.|++.
T Consensus        27 l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~  104 (382)
T PRK11128         27 WSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLF  104 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHH
Confidence            4778899999999999999999999999999999999999994    3333222222  223344568899999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      |++.+...+...++..++  +++|+++.+......++|.++||++++++.+++|||..|++.++..++..+ ..+..||.
T Consensus       105 g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~  181 (382)
T PRK11128        105 NLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLL-GQLLRPTI  181 (382)
T ss_pred             HHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHccCCC
Confidence            999888888888888877  356888888888888999999999999999999999999987765443332 23333432


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      .+.    +++++.   .                                    +   +..+++++++|+|.++...+..+
T Consensus       182 ~~~----~~~~~~---~------------------------------------~---~~~~~~~~i~~~~~~~~~~~~~~  215 (382)
T PRK11128        182 MPQ----GESRQQ---E------------------------------------S---AGWPAWKALLKEPTVWRFLLCVS  215 (382)
T ss_pred             CCc----cccccc---c------------------------------------c---cccchHHHHHcChhHHHHHHHHH
Confidence            111    000000   0                                    0   00123456788999988877777


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (444)
                      +..........+.|.|+++ .|.+.... .......++.++..++.+++.||+++|     +.+..+.++..+..+....
T Consensus       216 l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        216 LLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR-----DLLLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHh
Confidence            7766666677778888866 67776544 444455567777888888999998887     4455555555554444445


Q ss_pred             hhhHHHHHHHHHHHHH
Q 013356          420 LSSLYGFLALFTVGEL  435 (444)
Q Consensus       420 ~~~~~~~~~~~~~~~~  435 (444)
                      .++.+..++...+.++
T Consensus       290 ~~~~~~~~~~~~l~g~  305 (382)
T PRK11128        290 TTALPWLIVIQILHCG  305 (382)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            5565655444444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.92  E-value=7.1e-24  Score=225.74  Aligned_cols=245  Identities=13%  Similarity=0.017  Sum_probs=182.2

Q ss_pred             cccccccC-ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH---HHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          108 IQGDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV---GLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       108 i~~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      +..+.+.+ ....++..+++.+.++++++++|+++||+|||+++..   +.++..+..+.....+|+++++++|+++|++
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~  121 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH  121 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44444433 2457888999999999999999999999999997533   2233333333334458999999999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      .+...++..+++.+++++++|++++++.+++.++|.++||++++++....+|++.|+..++..++ .++..+.+|+.++.
T Consensus       122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  200 (1140)
T PRK06814        122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNA  200 (1140)
T ss_pred             HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999544444443 33344444543221


Q ss_pred             CCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356          264 FAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (444)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                      .... +...                                         ....+....++.+.+++.++...+..++..
T Consensus       201 ~~~~-~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1140)
T PRK06814        201 APDL-KIDR-----------------------------------------NIIRSTITLLKYAKADKRIWLAILGISWFW  238 (1140)
T ss_pred             CCCC-eecc-----------------------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            1000 0000                                         000011223556778899999888888888


Q ss_pred             HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhccc
Q 013356          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      +....+..++|.|+++.+|.+.... .+.+...++.++|.++.+++.++..++
T Consensus       239 ~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        239 LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence            8888888899999998888876655 555667788899999999999876655

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.92  E-value=1.8e-23  Score=201.36  Aligned_cols=244  Identities=12%  Similarity=0.092  Sum_probs=181.0

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-----CCcch-hHHHHHHHHHHHHhhhch---hhHHHHHH
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFRL-IGVGLSVWTFATAGCGSS---FDFWSIAI  175 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~s~~~l~~  175 (444)
                      +|...++.|.|.++++.+ +.....+ ++.+++|+++||+     |||+. +..+.+..+++..+.++.   ++++.+.+
T Consensus        35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~  112 (491)
T PRK11010         35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA  112 (491)
T ss_pred             HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            477888889999899987 3344443 6899999999999     99985 667777777777777665   47888999


Q ss_pred             HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc-ccchhHHHHHHHHHHHHHHHHHH
Q 013356          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      .+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++++.+ ..|||..|++.+++.++..+..+
T Consensus       113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988 47999999999888766655444


Q ss_pred             hhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (444)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      + .||+++..   ++++..                          +             +   ....++++.++++..+.
T Consensus       193 ~-~~e~~~~~---~~~~~~--------------------------~-------------~---~~~~~l~~~~~~~~~~~  226 (491)
T PRK11010        193 L-APEPTDTI---PVPKTL--------------------------E-------------Q---AVVAPLRDFFGRNNAWL  226 (491)
T ss_pred             h-cCCCcccc---ccccch--------------------------h-------------h---hHHHHHHHHHcCcCHHH
Confidence            3 56642210   000000                          0             0   00112344556666666


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhh-hhhcccchhhhhhhhhhhhhhcccc
Q 013356          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFG-GVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ..+..++..........+.+.|+.+..|.+.... ... ....++.+++.+++|+++||+++|+
T Consensus       227 ~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~  290 (491)
T PRK11010        227 ILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR  290 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            5555555555555566677777766678887666 332 3445688899999999999999873

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=4.5e-23  Score=201.39  Aligned_cols=158  Identities=17%  Similarity=0.205  Sum_probs=141.0

Q ss_pred             cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (444)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~  189 (444)
                      +.+..+.....+..+++.+|..+|++++|+++||+|||+++++++++..++.++.++++|++.+++.|++.|++.++...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            55667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCcc
Q 013356          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAES  269 (444)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  269 (444)
                      +...++.|++++++|+.+..+ ......|..+++..++++..  +||+.+++..+++++..++ +++.||++++...+.+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR  266 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence            999999999999999999999 66666677777777777776  7999999999998877665 5666799988765555


Q ss_pred             cc
Q 013356          270 GK  271 (444)
Q Consensus       270 ~~  271 (444)
                      .+
T Consensus       267 ~~  268 (521)
T KOG0255|consen  267 ID  268 (521)
T ss_pred             hH
Confidence            43

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.90  E-value=7.8e-27  Score=224.28  Aligned_cols=261  Identities=19%  Similarity=0.268  Sum_probs=184.1

Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh---hHHHHHHHHHHhHhhhhhhhhccHH
Q 013356          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLVGVGEASFISLAAP  193 (444)
Q Consensus       117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---s~~~l~~~r~l~G~~~g~~~~~~~~  193 (444)
                      .+.+++.+...+|..+|++++|+++||+|||+.+.++.++..++.++.++++   |++.+.++|+++|++.|+..+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3578999999999999999999999999999999999999999999999999   9999999999999999999999999


Q ss_pred             HhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc---chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccc
Q 013356          194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  270 (444)
Q Consensus       194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~---~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  270 (444)
                      ++.|..|+++|++..++.+.++.+|.+++..++..+.+..   +||..+.+.++++++..+.. +++||+|++...+++.
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~~~  204 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKGRD  204 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceecccccc
Confidence            9999999999999999999999999999998876654433   49999999998887665544 5669999988665544


Q ss_pred             cchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccC-----cchhhHHHHHHHHHHH
Q 013356          271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQE-----KVYVVNVLGYIAYNFV  345 (444)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  345 (444)
                      ++..+..++  .++.+..+++.++..++.++.++..              ..+++++++     +.+....+..+....+
T Consensus       205 ~~A~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g  268 (451)
T PF00083_consen  205 EEAEKVLRK--LRGKEIEDEEIEEIKAEKKESQESK--------------ASWRDLFRNKKYRKRLLIALLLQFFQQFSG  268 (451)
T ss_pred             ccccccccc--ccccccccccccccccccccccccc--------------eeeeeccccccccccccccccccccccccc
Confidence            432222111  1111110000000000000000000              112222332     3333333333443444


Q ss_pred             HHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          346 IGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      .+...++.+.++++ .+.+.. .....+..+...++.+++.++.||+|||+
T Consensus       269 ~~~~~~~~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  269 INFIFYYSPSIFEN-AGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRK  317 (451)
T ss_pred             cccccccccccccc-cccccc-ccccccccccccccccccccccccccccc
Confidence            45556677777665 455543 33344555777788888889999999994

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=5e-22  Score=188.97  Aligned_cols=283  Identities=13%  Similarity=0.081  Sum_probs=189.1

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      ++.+.+|+|-+ ....|+.+.+.++..++.++.|+++|.||||++++.+.++..+|.++++.++|...++++..+.|+|.
T Consensus        67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvga  145 (599)
T PF06609_consen   67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGA  145 (599)
T ss_pred             HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhh
Confidence            37788999865 67899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh-ccCcccC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI-KPLQLKG  263 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~  263 (444)
                      |.... ....++|..|.|+|+...++...........++.++..+..+.+|||.|++.+++..+.+++.+++ .|.+.+.
T Consensus       146 G~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~  224 (599)
T PF06609_consen  146 GVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQ  224 (599)
T ss_pred             HHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            76654 566689999999999988888877767677888888877777899999999988876665544433 3332211


Q ss_pred             CCCCcc-ccchhhhccc--------------------ccc-ccCCCCcccCCcccchhhhhhhhcccchhhhhhhcc--c
Q 013356          264 FAPAES-GKAQVVASVS--------------------EGS-EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQ--F  319 (444)
Q Consensus       264 ~~~~~~-~~~~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  319 (444)
                      ...++. .++..++ .+                    ... ...+.+......+......-     ...-.++.+..  .
T Consensus       225 ~~~~~~s~~~~l~~-lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L-----v~F~~wE~~~~~~~  298 (599)
T PF06609_consen  225 LHGRKLSKREQLKE-LDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL-----VAFVVWEWFGAPKD  298 (599)
T ss_pred             hccccCcHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH-----HHHHHhhhhccCCC
Confidence            111111 1111110 00                    000 00111110000000000000     00001111110  1


Q ss_pred             cccchhcccC-cchhhHHHHHHHHHHHHHHHHhhccccccccccCCcc---hh-hhhhhhcccchhhhhhhhhhhhhhcc
Q 013356          320 SQDTKVLLQE-KVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA---DM-MFGGVTIVCGIVGTISGGFILDQMGA  394 (444)
Q Consensus       320 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~g~l~dr~~~  394 (444)
                      .--+.+++|+ |.+...+++.+.....+++...+.|......++.+..   .. ..+....++..+|.++.+.+..+++|
T Consensus       299 Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~  378 (599)
T PF06609_consen  299 PLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH  378 (599)
T ss_pred             CcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc
Confidence            1123467777 5566666777777777888888888887777766542   22 34455566777888888899888875


Q ss_pred             c
Q 013356          395 T  395 (444)
Q Consensus       395 ~  395 (444)
                      -
T Consensus       379 ~  379 (599)
T PF06609_consen  379 I  379 (599)
T ss_pred             h
Confidence            4

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.90  E-value=2.5e-22  Score=189.80  Aligned_cols=244  Identities=14%  Similarity=0.049  Sum_probs=179.3

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-----CCcc-hhHHHHHHHHHHHHhhhch---hhHHHHHH
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-----NPFR-LIGVGLSVWTFATAGCGSS---FDFWSIAI  175 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~~~~~~~~~~---~s~~~l~~  175 (444)
                      +|.+-++.|.|.+++|++..+...  .+..+++|+++||+     |||| ++.++.++.+++..+.++.   ++++.+++
T Consensus        22 ~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~   99 (402)
T PRK11902         22 LQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAG   99 (402)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            477888889999999999777765  69999999999999     8876 7888888888777777776   45788888


Q ss_pred             HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 013356          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .|||..|++.+++.++..+. .
T Consensus       100 ~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~  178 (402)
T PRK11902        100 LAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-T  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-H
Confidence            888888888889999999999999999999999999999999999999999988885 59999999988876655443 3


Q ss_pred             hhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356          255 VIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (444)
Q Consensus       255 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +..||+++...+   .+..                                          .++..+++++++|+|.++.
T Consensus       179 ~~~~e~~~~~~~---~~~~------------------------------------------~~~~~~~~~~l~~~~~~~~  213 (402)
T PRK11902        179 LWAPEPEVPARP---PRSL------------------------------------------GEAVVGPLRDFFSRRGAWA  213 (402)
T ss_pred             HhcCCCcccccc---cchh------------------------------------------HHHHHHHHHHHHhCcCHHH
Confidence            444553221100   0000                                          0001223456788888887


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhh-cccchhhhhhhhhhhhhhcccc
Q 013356          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVT-IVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ..+..++..........+.+.++.+..|.++... ...... .++.+++.++++++.||+++|+
T Consensus       214 ~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~  277 (402)
T PRK11902        214 LLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            7666555544433333344445556578776655 322222 3457889999999999999873

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=3.1e-22  Score=188.85  Aligned_cols=275  Identities=12%  Similarity=0.065  Sum_probs=178.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hch-----hhHHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-----FDFWSIAICR  177 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-----~s~~~l~~~r  177 (444)
                      +.+.+++|.++.+.|++.+++.++..+++++.|+++||+|||+.++.+++...++....   .+.     +.+..+++.|
T Consensus        27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
T TIGR00882        27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG  106 (396)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34567799999999999999999999999999999999999999988776665544322   111     2234456778


Q ss_pred             HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      ++.|++.+...+....+..|..  ++++...+......++|.+++|.+++.+.+ .+||.+|++.+++.++..++.++..
T Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  183 (396)
T TIGR00882       107 LYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAK  183 (396)
T ss_pred             HHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhC
Confidence            9999988888888888877753  334566778888889999999999998865 6999999999888877766555544


Q ss_pred             cCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHH
Q 013356          258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  337 (444)
Q Consensus       258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      |+.+++    ++.+..    .+.     .               ++             +...++.++.+|+|.++...+
T Consensus       184 ~~~~~~----~~~~~~----~~~-----~---------------~~-------------~~~~~~~~~~l~~~~~~~~~l  222 (396)
T TIGR00882       184 PKAPSS----ATVANA----LGA-----N---------------AS-------------AFSLKLALELFRQRKFWMFVL  222 (396)
T ss_pred             CCCchh----hhhhcc----ccc-----c---------------cC-------------CCCHHHHHHHHcCCcHHHHHH
Confidence            442211    000000    000     0               00             000123456678888877666


Q ss_pred             HHHHHHHHHHHHHhhccccccccc---cCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356          338 GYIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (444)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  413 (444)
                      ..+.....+.....+.+.|+++.+   +.+.... ....+..+..+++.+..+++.||+++|+     ....+.++.++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----~l~~~~~l~~l~  297 (396)
T TIGR00882       223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----ALLIAGTIMSVR  297 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----hHHHHHHHHHHH
Confidence            555555555555556666665543   2222222 3334455667778899999999999984     344444443333


Q ss_pred             HHHHHHhhhHHHHHHH
Q 013356          414 CLTAFCLSSLYGFLAL  429 (444)
Q Consensus       414 ~~~~~~~~~~~~~~~~  429 (444)
                      .......++.+..+..
T Consensus       298 ~~~~~~~~~~~~~~~~  313 (396)
T TIGR00882       298 IIGSSFATTALEVVIL  313 (396)
T ss_pred             HHHHHhcCChHHHHHH
Confidence            3333334444444333

>PTZ00207 hypothetical protein; Provisional

Probab=99.89  E-value=4.4e-22  Score=190.69  Aligned_cols=332  Identities=10%  Similarity=-0.005  Sum_probs=209.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch------hhHHHHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFWSIAICRML  179 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~s~~~l~~~r~l  179 (444)
                      |.+++++|+|..+++++.++. ....+++++.|++.||+|||+++.++.++++++.++++++      ++++.+++.|++
T Consensus        51 ~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l  129 (591)
T PTZ00207         51 GAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGL  129 (591)
T ss_pred             HHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence            789999999999999998874 4456778889999999999999999999999999999987      689999999999


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch-hhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      .|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++..+++.  .+|+..|++.+++.++..++.+++++
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            999999999999999999997 88999999999999999976 555555554  36999999999988888777777665


Q ss_pred             CcccCCC--CC---ccccchhhh------------------------------------cc--c----------------
Q 013356          259 LQLKGFA--PA---ESGKAQVVA------------------------------------SV--S----------------  279 (444)
Q Consensus       259 ~~~~~~~--~~---~~~~~~~~~------------------------------------~~--~----------------  279 (444)
                      +.+....  ++   ++++...++                                    ..  +                
T Consensus       207 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~l  286 (591)
T PTZ00207        207 LPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVL  286 (591)
T ss_pred             CCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            4432211  11   111110000                                    00  0                


Q ss_pred             ----c-------ccccC--C-C-CcccCCcccchhhhhhhhcc-cchhhhhhhccccccchhcccCcchhhHHHHHHHHH
Q 013356          280 ----E-------GSEAS--N-L-NDHVSEDISDQASERSIKSI-GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYN  343 (444)
Q Consensus       280 ----~-------~~~~~--~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
                          +       ..+..  . . +.+..+..+...+...++.. ..........+...++.+.+++..+|++....++..
T Consensus       287 ll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~  366 (591)
T PTZ00207        287 TVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCV  366 (591)
T ss_pred             HHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhh
Confidence                0       00000  0 0 00000000000000000000 000000000011126677788999999999999988


Q ss_pred             HHHHHHHhhccccccccccCC-cc--hhhhhhhhcccchhhhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHHHH
Q 013356          344 FVIGAYSYWGPKAGYNIYHMS-NA--DMMFGGVTIVCGIVGTISGGFILDQMGATI----SNAFKLLSAATFLGAISCLT  416 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~----~~~~~~~~~~~~~~~~~~~~  416 (444)
                      .....+...+.++.+...|.+ ..  ...+.++.++++.+|++..|++...+.+|.    ..+...+.+..+..+..+++
T Consensus       367 g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll  446 (591)
T PTZ00207        367 GAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTL  446 (591)
T ss_pred             CchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHH
Confidence            888888888888888763552 22  223567888999999999999884443332    22223333333322223333


Q ss_pred             HHHhh--hHHHHHHHHHHHHHHHhhhc
Q 013356          417 AFCLS--SLYGFLALFTVGELLVFATQ  441 (444)
Q Consensus       417 ~~~~~--~~~~~~~~~~~~~~~~~~~~  441 (444)
                      ....+  ..+...++..++.++.++..
T Consensus       447 ~~~~p~~~L~~~~~lvg~~~G~~~~~~  473 (591)
T PTZ00207        447 FLTLPKAALPLPYFIAAFANGFMAATI  473 (591)
T ss_pred             HHHCCccHhHHHHHHHHHHhhHhHHHH
Confidence            33333  34444445555554444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=4.4e-22  Score=189.33  Aligned_cols=274  Identities=14%  Similarity=0.065  Sum_probs=166.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---chh-----hHHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---SSF-----DFWSIAICR  177 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----s~~~l~~~r  177 (444)
                      ..+.+++|+|+.+.|++.+++.++..++++++|+++||+|||+++.++..+.+++.....   .++     .....++++
T Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (420)
T PRK09528         35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG  114 (420)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667999999999999999999999999999999999999999887666554433211   111     111123334


Q ss_pred             HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      ++.|.+.....+....+..+ . .++++...+......++|.+++|++++.+.+ .+|++.|++.++++++..++.++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~  191 (420)
T PRK09528        115 IYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAK  191 (420)
T ss_pred             HHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccc
Confidence            44444333333333333322 2 2466778888889999999999999998876 5899999998888776665555544


Q ss_pred             cCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHH
Q 013356          258 PLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVL  337 (444)
Q Consensus       258 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (444)
                      |+.++...   ..++.    .             .+                     +.+...++.+..+|+|.++...+
T Consensus       192 ~~~~~~~~---~~~~~----~-------------~~---------------------~~~~~~~~~~~~l~~~~~~~l~l  230 (420)
T PRK09528        192 PDAPSTAK---VANAL----G-------------AN---------------------ASAVSLKDALALLKLPKFWFLVL  230 (420)
T ss_pred             ccccchhh---hccch----h-------------cc---------------------cccccHHHHHHHccCCCeEeehH
Confidence            44221100   00000    0             00                     00000122345667887776665


Q ss_pred             HHHHHHHHHHHHHhhccccccccc---cCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356          338 GYIAYNFVIGAYSYWGPKAGYNIY---HMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (444)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  413 (444)
                      ..+.....+.....+.|.|+.+..   +.+.... ....+..++.+++.++.|++.||+++|+     .+..+.++..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~~~~~l~~~~  305 (420)
T PRK09528        231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----ALLLAGTIMAVR  305 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----hhHHHHHHHHHH
Confidence            554444444445555666665432   2332222 3344555677889999999999999984     344444444444


Q ss_pred             HHHHHHhhhHHHHHH
Q 013356          414 CLTAFCLSSLYGFLA  428 (444)
Q Consensus       414 ~~~~~~~~~~~~~~~  428 (444)
                      .......++.+..+.
T Consensus       306 ~~l~~~~~~~~~~~~  320 (420)
T PRK09528        306 IIGSGFATGPLEVSI  320 (420)
T ss_pred             HHHHHhcccHHHHHH
Confidence            444444445554433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=4.1e-22  Score=173.53  Aligned_cols=150  Identities=19%  Similarity=0.176  Sum_probs=123.9

Q ss_pred             ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (444)
Q Consensus       113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  192 (444)
                      +.+....|.+.+.|++++.+.++.+|.++||+|||+++++++...++...+.+.++|+..++++|++.|+..| ...+..
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r  142 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR  142 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence            3455678999999999999999999999999999999999999999999999999999777778999999987 668889


Q ss_pred             HHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc---ccchhHHHH----HHHHHHHHHHHHHHhhccCcccCC
Q 013356          193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFW----GEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---~~~wr~~f~----~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      ++++|.+++|+|++.++.+...+++|.++||.+|+++..   ..| +.+|.    +..++.........+++||+.+.+
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~r  220 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPLR  220 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccch
Confidence            999999999999999999999999999999999999986   222 22222    233333332333445668876543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2e-21  Score=168.91  Aligned_cols=241  Identities=15%  Similarity=0.112  Sum_probs=205.2

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.++++++|+|+|.+..|++.++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~  111 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGA  111 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHh
Confidence            55799999999999999999999999999999999999999999999999999999999999887 78889999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      |.+......+.++-+.+| |+-+..++++....++|..+++.++..+.++. |||.....-+.++++..++++   |...
T Consensus       112 gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~  187 (395)
T COG2807         112 GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL---PQAL  187 (395)
T ss_pred             hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh---hhcc
Confidence            999999999999999999 78899999999999999999999998888877 799999998888777665443   4422


Q ss_pred             cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (444)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +......+.+                                                ..+-..++|+|.-|...+.+.+
T Consensus       188 r~~~~~~~~~------------------------------------------------~~~~~~vw~~~~aW~vtLfmGl  219 (395)
T COG2807         188 REQAASIATK------------------------------------------------LVSVRKVWRSPLAWQVTLFMGL  219 (395)
T ss_pred             cccccccccc------------------------------------------------cccccccccCchhHHHHHHHHh
Confidence            2110100000                                                1112357899999999999999


Q ss_pred             HHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          342 YNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      +.+.+|....|+|.++.+ .|+|+... .+.++..+.+++..+....+.+|...+++
T Consensus       220 qS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~  275 (395)
T COG2807         220 QSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP  275 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            999999999999999998 68887776 66677788999999999999998655543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.88  E-value=1.2e-21  Score=187.56  Aligned_cols=260  Identities=13%  Similarity=0.091  Sum_probs=187.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCCcc-hhHHHHHHHHHHHHhhhchhh------HHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA  174 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~s------~~~l~  174 (444)
                      +.+.+++|+++.++|++.++..+..++..++.|+++||    +|||| .++.+....+++.+++.+.++      ...++
T Consensus        24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (437)
T TIGR00792        24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY  103 (437)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            66788899999999999999999999999999999998    67744 677888888888887776654      45667


Q ss_pred             HHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccchhhhHHHHhh-------cccchhHHHHHHHHHH
Q 013356          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM  246 (444)
Q Consensus       175 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-------~~~~wr~~f~~~~~~~  246 (444)
                      +.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+.+.+.       +..+||+.+.+.+++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~  183 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG  183 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence            7889999998888888888999987 4689999999999888888877766655443       2468999999999888


Q ss_pred             HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (444)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (444)
                      ++..++.++..||+++....+++.+                                             .+..+.++.+
T Consensus       184 ~~~~~~~~~~~~e~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l  218 (437)
T TIGR00792       184 VVSLIICFFGTKERYSEIPKNIEKK---------------------------------------------LSLKQIFKAL  218 (437)
T ss_pred             HHHHHHHHcCCEecCCCCCcccccC---------------------------------------------CCHHHHHHHH
Confidence            8777666666565321100000000                                             0012234567


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHH
Q 013356          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAA  406 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~  406 (444)
                      +++|.++...+..++.....+....+.+.|.+...+.+.....+..+..++.+++.++.+++.||+|+|     +....+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----~~~~~~  293 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----ILFAGG  293 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHH
Confidence            788998888877777777777666666667665555332222444555688889999999999999987     334444


Q ss_pred             HHHHHHHHH
Q 013356          407 TFLGAISCL  415 (444)
Q Consensus       407 ~~~~~~~~~  415 (444)
                      .++.++..+
T Consensus       294 ~~~~~~~~~  302 (437)
T TIGR00792       294 ILLMVLGYL  302 (437)
T ss_pred             HHHHHHHHH
Confidence            444444333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=3.9e-21  Score=184.25  Aligned_cols=153  Identities=17%  Similarity=0.124  Sum_probs=133.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhhHHH-HHHHHHHhHhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWS-IAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s~~~-l~~~r~l~G~~  183 (444)
                      ..+++++|++.++.+++.+.+.....+..+++|+++|| +|||++++++.++++++.+.++++++... ++++|+++|+|
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig  118 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG  118 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            56788999999999999999998888999999999999 99999999999999999999999877554 45899999999


Q ss_pred             hhhhhhccHHHhhhcCCCC--chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          184 EASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      .|...+...+++.|.+|++  +|+++.++++.+.++|.++||.+++++.+++|||+.|++.++ +++..++.+.+.++
T Consensus       119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~  195 (489)
T PRK10207        119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRG  195 (489)
T ss_pred             cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcch
Confidence            9999999999999999877  457799999999999999999999999999999999998655 44444444444443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.87  E-value=1.5e-20  Score=180.26  Aligned_cols=144  Identities=13%  Similarity=0.091  Sum_probs=132.2

Q ss_pred             ccccc--cccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          107 GIQGD--FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       107 ~i~~~--~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      .+.++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.++++|++.|+|
T Consensus        36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g  115 (475)
T TIGR00924        36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG  115 (475)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence            34555  89999999999999999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCc---hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356          184 EASFISLAAPFIDDNAPVPQ---KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~  250 (444)
                      .|...+...++++|++|+++   |+.+.++++.+.++|.++||.+++++.+++|||+.|.+.++..++..
T Consensus       116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL  185 (475)
T ss_pred             cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            99999999999999998764   88899999999999999999999999998999999999876554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=2e-20  Score=178.83  Aligned_cols=282  Identities=14%  Similarity=0.121  Sum_probs=205.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~  180 (444)
                      +.+..+..-|+..++++..+..+...+.+++.|.++||++||++++.+-++..+..++.++.     .+.+.+++.-++.
T Consensus        34 ~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~  113 (524)
T PF05977_consen   34 AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLL  113 (524)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            44555667788999999999999999999999999999999999999988776655544432     4788999999999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      |++.+...|...+++.|.+|+++...+.++.+...++..++||.+||.+...+|-.+.|.+.++..++..+....+.++.
T Consensus       114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~  193 (524)
T PF05977_consen  114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP  193 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            99999999999999999999999999999999999999999999999999888888999988766555444333332221


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      .+.    +..++                                         ...++....++-+.++|.+....+..+
T Consensus       194 ~~~----~~~~e-----------------------------------------~~~~~l~~G~ryv~~~~~l~~~l~~~~  228 (524)
T PF05977_consen  194 PPS----SLPRE-----------------------------------------RFFSALREGLRYVRSSPPLRSVLLRSF  228 (524)
T ss_pred             ccc----ccchh-----------------------------------------hhhhhHHHHHHHHhcchHHHHHHHHHH
Confidence            100    00000                                         011122334444556666665555555


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (444)
                      +..+....+...+|.+.++..+.++..+ .+.+..+++.++|.++.+++.+|++++     +++..+.++.++.++....
T Consensus       229 ~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~-----~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  229 LFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSR-----RLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-----hhhHHHHHHHHHHHHHHhc
Confidence            5555555666778999888888777666 555666777777777777777776665     4455566666666666666


Q ss_pred             hhhHHHHHHHHHHHHHHH
Q 013356          420 LSSLYGFLALFTVGELLV  437 (444)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~  437 (444)
                      .++.+..++.+++.+++.
T Consensus       304 ~~~~~~~~~~l~l~G~~~  321 (524)
T PF05977_consen  304 SPSFWLALIALFLAGAAW  321 (524)
T ss_pred             chHHHHHHHHHHHHHHHH
Confidence            677776666555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=7.4e-22  Score=176.11  Aligned_cols=321  Identities=14%  Similarity=0.107  Sum_probs=210.5

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccccc-c-------cCccchhHHHHHHHHHHHHHh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDF-K-------LNNFQDGVLSSAFMVGLLVAS  134 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~-~-------~s~~~~~~~~s~~~l~~~~~~  134 (444)
                      ..+.+.+...+.+.+.+|...++..                 .|-+...| +       .++...+.+..+..+|.++||
T Consensus        39 ~fk~i~iAG~GfftDsYDlF~I~lV-----------------t~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQ  101 (538)
T KOG0252|consen   39 HFKAIIIAGMGFFTDSYDLFSISLV-----------------TKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQ  101 (538)
T ss_pred             HHHHHHHhhhhhcccchhhhhHHHH-----------------HHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHH
Confidence            3446667778889999998888753                 13333222 1       445667888999999999999


Q ss_pred             hhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-------hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHH
Q 013356          135 PIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAW  207 (444)
Q Consensus       135 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~  207 (444)
                      +++|+++||+|||+++...+++..+++++++++.       -.+++.+.|+++|+|.|+-+|.+.+..+|...+++||..
T Consensus       102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~  181 (538)
T KOG0252|consen  102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF  181 (538)
T ss_pred             HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence            9999999999999999999999999999887753       256788899999999999999999999999999999999


Q ss_pred             HHHHhhhcccccchhhhHHHHhhc-------------c--cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccc
Q 013356          208 LSMFYMCIPTGVALGYVYGGVVGS-------------H--LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (444)
Q Consensus       208 ~~~~~~~~~~G~~~~~~l~~~l~~-------------~--~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (444)
                      .+...+..+.|.+.|.+++-.+..             +  .-||..|.+.+++++.... .-+.+||+.+.....+++.+
T Consensus       182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly-~Rl~M~Et~~Y~al~~~~~~  260 (538)
T KOG0252|consen  182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY-FRLKMPETARYTALVSKKLK  260 (538)
T ss_pred             eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH-hhhcCCcchhHHHHhhcCHh
Confidence            999999999998888877755421             0  2399999888777655443 33344776654311111100


Q ss_pred             hhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhh
Q 013356          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (444)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (444)
                      ...++.. +.  ...      +.+.+...  +..  .+...+....+.+.+... .-+++...+..+|+...++|..+.+
T Consensus       261 ~a~~d~~-k~--~~~------~~~~~~~~--~~~--~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~  326 (538)
T KOG0252|consen  261 QAAGDMK-KV--LSV------DIEAESTA--ESD--VPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLF  326 (538)
T ss_pred             hhhhccc-cc--ccc------ccchhhcc--ccC--CCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccH
Confidence            0000000 00  000      00000000  000  000001111112222222 3356777788899999999998888


Q ss_pred             ccccccccccCCcch---------h-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 013356          353 GPKAGYNIYHMSNAD---------M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLS  421 (444)
Q Consensus       353 ~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (444)
                      ...++++. +..+..         + .-..+..++.++|..+..+++|++||+     ...+.++++..++.+.+....
T Consensus       327 ~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk-----~iq~~GF~~~~i~~~~~~~~y  399 (538)
T KOG0252|consen  327 QSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK-----YIQLMGFFIMTIFFFVIAGPY  399 (538)
T ss_pred             HHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH-----HHHHhhHHHHHHHHHHHcCCc
Confidence            88887753 332211         1 222344456777999999999999999     556666666666655554433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.85  E-value=1.4e-19  Score=171.16  Aligned_cols=251  Identities=10%  Similarity=0.014  Sum_probs=168.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC-cchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +.+.+++|++..++|++.+++.++..++++++|+++||+|| |+++.++.++.+++..+..+.++++.+++.|++.|++.
T Consensus        27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (418)
T TIGR00889        27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY  106 (418)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            66788899999999999999999999999999999999965 77888888888888888889999999999999999987


Q ss_pred             hhhhhccHHHhh--------hcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          185 ASFISLAAPFID--------DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       185 g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      +...+...++..        |......|.+..|      .+|.++++.+++.+.....|+ +|++.+++.++..++ .+.
T Consensus       107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~  178 (418)
T TIGR00889       107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALT  178 (418)
T ss_pred             ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-Hhc
Confidence            766666555432        2222234444444      368888898888774433455 455566555554443 345


Q ss_pred             ccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHH
Q 013356          257 KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV  336 (444)
Q Consensus       257 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (444)
                      .||.++...+++  ...                                        .+  ....+.+.++|+|.++...
T Consensus       179 ~~e~~~~~~~~~--~~~----------------------------------------~~--~~~~~~~~~~k~~~~~~~~  214 (418)
T TIGR00889       179 LPDIPVAKSTAK--MSI----------------------------------------KV--MLGLDAFILFKNKRMAIFF  214 (418)
T ss_pred             CCCCCCCccccc--cCH----------------------------------------HH--HhhhhHHHHhcCCCeeeHH
Confidence            566432110000  000                                        00  0001123467888888777


Q ss_pred             HHHHHHHHHHHHHHhhccccccccccCCc--------chh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHH
Q 013356          337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSN--------ADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  407 (444)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  407 (444)
                      +..++..........+.|.++++ .+.++        ... ....+..+..+++.+..+++.||+|+|     +.+..+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----~~l~~~~  288 (418)
T TIGR00889       215 FFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----KVMLLSL  288 (418)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHHHHH
Confidence            77766655555556667777765 33321        122 444555677888899999999999998     4455555


Q ss_pred             HHHHHHH
Q 013356          408 FLGAISC  414 (444)
Q Consensus       408 ~~~~~~~  414 (444)
                      ++..+..
T Consensus       289 ~~~~v~~  295 (418)
T TIGR00889       289 VAWALRF  295 (418)
T ss_pred             HHHHHHH
Confidence            5544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.84  E-value=4e-20  Score=176.98  Aligned_cols=289  Identities=20%  Similarity=0.324  Sum_probs=221.5

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----------------
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------------  167 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------------  167 (444)
                      +..+.+.|+++.++.|++.+.+-++..+...+..+..-|.-|-+++-+|+++.+++++++++-                 
T Consensus       120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~  199 (735)
T KOG3626|consen  120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS  199 (735)
T ss_pred             hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence            388999999999999999999999999999999999999999999999999999999998761                 


Q ss_pred             ---------------------------------hh-HH-HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHh
Q 013356          168 ---------------------------------FD-FW-SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY  212 (444)
Q Consensus       168 ---------------------------------~s-~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~  212 (444)
                                                       ++ ++ .++++.++.|+|....++.+.+|+-|.+.+++-...+|+..
T Consensus       200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~  279 (735)
T KOG3626|consen  200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY  279 (735)
T ss_pred             ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence                                             01 33 56779999999999999999999999999999999999999


Q ss_pred             hhcccccchhhhHHHHhhccc-------------------chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccch
Q 013356          213 MCIPTGVALGYVYGGVVGSHL-------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQ  273 (444)
Q Consensus       213 ~~~~~G~~~~~~l~~~l~~~~-------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  273 (444)
                      ....+|.++|.++|+++...|                   .|..-|++++.+.++..+..+++ |+..+....+.+.++.
T Consensus       280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f-Pk~lp~~~~~~~~~~~  358 (735)
T KOG3626|consen  280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF-PKELPKSQKRKRARDL  358 (735)
T ss_pred             HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC-cccCccccccchhhhh
Confidence            999999999999999875421                   37777888888877777666555 5544332211000000


Q ss_pred             hhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhc
Q 013356          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  353 (444)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (444)
                             +..+...                +.........+..+++.+..+++++||.++..++...+....+.++.+|+
T Consensus       359 -------~~~k~~~----------------~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl  415 (735)
T KOG3626|consen  359 -------HVLKTES----------------GGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL  415 (735)
T ss_pred             -------ccccccc----------------ccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence                   0000000                00011111224566778888999999999999999999999999999999


Q ss_pred             cccccccccCCcchh--hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356          354 PKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (444)
Q Consensus       354 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (444)
                      |.|++.+++.++..+  +.+.+...+..+|.+++|+++.|+.-+.+...++.+++.++..++.+..
T Consensus       416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~  481 (735)
T KOG3626|consen  416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLL  481 (735)
T ss_pred             HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987666  4444545677889999999999988776655455555555555553333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.83  E-value=2.6e-22  Score=192.46  Aligned_cols=291  Identities=21%  Similarity=0.359  Sum_probs=3.0

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----------------
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------------  167 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------------  167 (444)
                      ++.++++|+++.++.|++.+.+-++..+..++..++.+|..|-+++-+|.++.+++++++++-                 
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            488999999999999999999999999999999999999889999999999999999887650                 


Q ss_pred             ---------------------------------hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhh
Q 013356          168 ---------------------------------FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (444)
Q Consensus       168 ---------------------------------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (444)
                                                       .-+..+++++++.|+|.+..++.+.+|+-|.+++++-+.++|+..+.
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                             01356788999999999999999999999999999999999999999


Q ss_pred             cccccchhhhHHHHhhccc----------------------chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccc
Q 013356          215 IPTGVALGYVYGGVVGSHL----------------------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKA  272 (444)
Q Consensus       215 ~~~G~~~~~~l~~~l~~~~----------------------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  272 (444)
                      ..+|.++|.++|+.+.+.+                      .|..-|++.+++.++..+..+++ |+..+...+.++.++
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F-Pk~lp~~~~~~~~~~  264 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF-PKKLPGTSERQEEKE  264 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC-CccCCCcccccchhh
Confidence            9999999999998775421                      26666667777666665555444 655443311111000


Q ss_pred             hhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhh
Q 013356          273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYW  352 (444)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (444)
                      ..++..                 .+...++.++....+......+++++..+++++||.++...++.........++.++
T Consensus       265 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF  327 (539)
T PF03137_consen  265 SSERKE-----------------EDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF  327 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhcch-----------------hhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000                 000000000000111123556778888999999999999999999999999999999


Q ss_pred             ccccccccccCCcchh--hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356          353 GPKAGYNIYHMSNADM--MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (444)
Q Consensus       353 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  413 (444)
                      .|.|++.+++.++..+  ..+.+...+.++|.+++|++.+|++-+.+...++.+...++..+.
T Consensus       328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~  390 (539)
T PF03137_consen  328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVIL  390 (539)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999987665  334444457889999999999999776554434444444444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.83  E-value=7.8e-19  Score=165.41  Aligned_cols=263  Identities=9%  Similarity=-0.088  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHH--HHHHHHHHHHHhhhhhh-hhhh
Q 013356           67 LVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVL--SSAFMVGLLVASPIFAS-LAKS  143 (444)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~g~-l~dr  143 (444)
                      +..++..++..+...+...                 |.+|.+.+|.|.|.+++|++  .++..+...+.+++++. ..||
T Consensus         3 ~~~~~~ly~~~g~~~~~~~-----------------p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~   65 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAM-----------------DALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR   65 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHH-----------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            4455566666666544443                 33588999999999999997  46778888888888855 7999


Q ss_pred             cCCcchhHHHHHHH-HHHHHhhh---chhh-HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccc
Q 013356          144 HNPFRLIGVGLSVW-TFATAGCG---SSFD-FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (444)
Q Consensus       144 ~Grr~~l~~~~~~~-~~~~~~~~---~~~s-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (444)
                      +||||..++.+.+. .......+   ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|
T Consensus        66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG  145 (390)
T TIGR02718        66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG  145 (390)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence            99999875555332 21222222   2222 3344455556667777777788888889998888898888888888999


Q ss_pred             cchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356          219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (444)
Q Consensus       219 ~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (444)
                      .++|+...+++.+++|||..|++.+++.++..+..+++.|+.+++   +++++                           
T Consensus       146 ~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~---~~~~~---------------------------  195 (390)
T TIGR02718       146 FFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVAS---PEAPL---------------------------  195 (390)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc---cccch---------------------------
Confidence            999998888999999999999999988777666655543332110   00000                           


Q ss_pred             hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhc-c
Q 013356          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTI-V  376 (444)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~  376 (444)
                                     .    ..+++++.+|+|.++......++..........+.+.|+.+ .|.+.... ....... .
T Consensus       196 ---------------~----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~  255 (390)
T TIGR02718       196 ---------------A----RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAV  255 (390)
T ss_pred             ---------------h----hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHH
Confidence                           0    01124466788888877777777777777777788888887 58887665 3333333 4


Q ss_pred             cchhhhhhhhhhhhhhcccc
Q 013356          377 CGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       377 ~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ..+++.+++|++.||+++|+
T Consensus       256 ~~~~g~~~~g~l~~r~g~~~  275 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLWR  275 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHH
Confidence            56677889999999999873

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.82  E-value=1.7e-18  Score=167.00  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=125.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~  183 (444)
                      ..+.+++|++..+.+++.+.+........+++|+++|| +|||+.++++.++.+++.+++++++ +.+.++++|+++|++
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            55678999999999998888877767777899999999 5999999999999999999998874 566777899999999


Q ss_pred             hhhhhhccHHHhhhcCCCCc--hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356          184 EASFISLAAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~  250 (444)
                      .|...+...+++.|++|+++  |+.++++++.+.++|..+||.+++++.+++|||+.|++.++..++..
T Consensus       126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            99999999999999998654  45678899999999999999999999999999999998876544433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=148.73  Aligned_cols=320  Identities=14%  Similarity=0.102  Sum_probs=219.3

Q ss_pred             CCCcchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhh
Q 013356           59 SWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA  138 (444)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g  138 (444)
                      ..+++|.+++.+++..+.+.++....+..                 .......|+ +....-|+.-+|++.+....+++-
T Consensus        39 Vy~rRW~vLl~~slL~~SN~~qWI~ya~i-----------------~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~m  100 (480)
T KOG2563|consen   39 VYPRRWVVLLAFSLLNFSNGMQWIQYAPI-----------------NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAM  100 (480)
T ss_pred             cchhHhHHHHHHHHHHhcCcchheeehhH-----------------HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHH
Confidence            33445557777777777776655444432                 255666778 777788999999999999999999


Q ss_pred             hhhhhcCCcchhHHHHHHHHHHHHhhhch------hhHH--HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHH
Q 013356          139 SLAKSHNPFRLIGVGLSVWTFATAGCGSS------FDFW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM  210 (444)
Q Consensus       139 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~s~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  210 (444)
                      |+.|++|-|..++++..+.++|..+-..+      +.++  ....+..+.+.+.-.+...-..+..-|+++++|..+..+
T Consensus       101 w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~  180 (480)
T KOG2563|consen  101 WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL  180 (480)
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH
Confidence            99999999999999999999999987765      3445  677889999998887777778888999999999999999


Q ss_pred             HhhhcccccchhhhHHHHhhcc------cchhH--HHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhcccccc
Q 013356          211 FYMCIPTGVALGYVYGGVVGSH------LNWRY--AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGS  282 (444)
Q Consensus       211 ~~~~~~~G~~~~~~l~~~l~~~------~~wr~--~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  282 (444)
                      -..+..+|.+++.++...+..+      ..|..  .|+...+++.+.+++..+..++.|+.  ++......         
T Consensus       181 ~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t--Pps~s~~~---------  249 (480)
T KOG2563|consen  181 GVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT--PPSASQAA---------  249 (480)
T ss_pred             HHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCchhHhh---------
Confidence            9999999999988888777543      34654  35545555444444444444443322  11111110         


Q ss_pred             ccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccccccc
Q 013356          283 EASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYH  362 (444)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (444)
                                                     .+-.++.+..++.+++++|...++++......+++..+.+...+.. .+
T Consensus       250 -------------------------------~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sg  297 (480)
T KOG2563|consen  250 -------------------------------LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP-SG  297 (480)
T ss_pred             -------------------------------hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc-cc
Confidence                                           0011245667788999999999999999999999888877644433 23


Q ss_pred             CCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH-HH---HHHHhhhHHHHHHHHHHHHHHH
Q 013356          363 MSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CL---TAFCLSSLYGFLALFTVGELLV  437 (444)
Q Consensus       363 ~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~  437 (444)
                      .+.... ....+..+++++++++.|.+.||.++-+..    ++.......+. +.   ........+.......+.+++.
T Consensus       298 Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~----~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  298 YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLT----TLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence            332223 555666788999999999999998764322    22222222222 11   1112223445555556666666


Q ss_pred             hhhccc
Q 013356          438 FATQVI  443 (444)
Q Consensus       438 ~~~~~~  443 (444)
                      .+..|+
T Consensus       374 ~~~~Pi  379 (480)
T KOG2563|consen  374 TGYLPI  379 (480)
T ss_pred             cCCCCc
Confidence            666664

>PRK09669 putative symporter YagG; Provisional

Probab=99.77  E-value=1.2e-17  Score=160.00  Aligned_cols=243  Identities=11%  Similarity=0.008  Sum_probs=164.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCC-cchhHHHHHHHHHHHHhhhchhh------HHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIA  174 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~s------~~~l~  174 (444)
                      ..+.+++|+++.++|.+.++..+..++..|+.|+++||    +|| |+.++.+.+..+++.++....++      +..++
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~  113 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC  113 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            55778899999999999999999999999999999998    776 45666777777777665544432      45566


Q ss_pred             HHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccchhhhHHHHhhc-------ccchhHHHHHHHHHH
Q 013356          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILM  246 (444)
Q Consensus       175 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~wr~~f~~~~~~~  246 (444)
                      +..++.+.+.+.......++.+|+. ++++|++..++...+..+|..+++.+...+..       ..+|+..+.+.++++
T Consensus       114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~  193 (444)
T PRK09669        114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG  193 (444)
T ss_pred             HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6677777777777778889999998 45789988888888888887777665433321       357898888888877


Q ss_pred             HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (444)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (444)
                      ++..+..++..+|.....   ++.+                                             .+..++++.+
T Consensus       194 ~v~~~~~~~~~~e~~~~~---~~~~---------------------------------------------~~~~~~~~~~  225 (444)
T PRK09669        194 VVLFFCCFFMTKERYTPE---VDNS---------------------------------------------SSVWKDLKLL  225 (444)
T ss_pred             HHHHHHHhCCeEEecCCC---CcCC---------------------------------------------CCHHHHHHHH
Confidence            776665555544421110   0000                                             0112345667


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++||.++..++..++............+.|.+...+.......+.....+..+++.++.+++.||+|+|+
T Consensus       226 ~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~  295 (444)
T PRK09669        226 LGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR  295 (444)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            8999988887766665555544444444444433332222223333444667788888999999999874

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.77  E-value=3.5e-18  Score=162.79  Aligned_cols=285  Identities=15%  Similarity=0.107  Sum_probs=209.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCCcc-hhHHHHHHHHHHHHhhhch-h-------hHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFR-LIGVGLSVWTFATAGCGSS-F-------DFWS  172 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~-~l~~~~~~~~~~~~~~~~~-~-------s~~~  172 (444)
                      +.+.+.+|+++...|.+..+..+-.++..|+.|.++|    |+|||+ .+++|....+++.+++... +       ....
T Consensus        26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            5567778999999999999999999999999999999    899555 5667888888888877766 4       2334


Q ss_pred             HHHHHHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcc-------cchhHHHHHHHH
Q 013356          173 IAICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAI  244 (444)
Q Consensus       173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~wr~~f~~~~~  244 (444)
                      +.+.-++..++.........++..|..+ +++|.+..++-..+..+|.++...+.+.+.+.       .+|++..++.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            5777777799999999999999999998 57899999999888888887666655554422       169999999999


Q ss_pred             HHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccch
Q 013356          245 LMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTK  324 (444)
Q Consensus       245 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (444)
                      +.++..++..+..+|..+...++                                              ++..+..+.++
T Consensus       186 v~~v~~~i~~~~~ke~~~~~~~~----------------------------------------------~~~~~~~~~~~  219 (428)
T PF13347_consen  186 VGLVFFLITFFFVKERSVEVTEQ----------------------------------------------EKKISLRDSLR  219 (428)
T ss_pred             HHHHHhhhhhheeeecccccccc----------------------------------------------ccccccccchh
Confidence            88888877777767611110000                                              01112234566


Q ss_pred             hcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHH
Q 013356          325 VLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLS  404 (444)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~  404 (444)
                      .+++||.++...+..++............+.|.+...+.+.....+.....++.+++.++.++++||+|+|+     ...
T Consensus       220 ~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----~~~  294 (428)
T PF13347_consen  220 SLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-----VYI  294 (428)
T ss_pred             hhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-----ehh
Confidence            788999999988888888888777777777777777666643335555667888999999999999999984     455


Q ss_pred             HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhc
Q 013356          405 AATFLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQ  441 (444)
Q Consensus       405 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  441 (444)
                      .+.++.++..+.....+  +.+..++...+.+.+....+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~  333 (428)
T PF13347_consen  295 IGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFF  333 (428)
T ss_pred             hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccc
Confidence            55555555555544443  66666666666666555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=4.9e-17  Score=153.03  Aligned_cols=257  Identities=12%  Similarity=0.037  Sum_probs=170.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCCcchhHHH-HHHHHHHHHhhhchhhHH---------
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIGVG-LSVWTFATAGCGSSFDFW---------  171 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~s~~---------  171 (444)
                      +.+.+++|.++...+++..+..+...+.+++.|+++|    |+|||+.++++ .+...++.++.+++++++         
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~  107 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccc
Confidence            4466889999999999999999999999999999999    59999988875 666666667777766643         


Q ss_pred             --------HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCch--hHHHHHHhhhcccccchhhhHHHHh--hccc------
Q 013356          172 --------SIAICRMLVGVGEASFISLAAPFIDDNAPVPQK--TAWLSMFYMCIPTGVALGYVYGGVV--GSHL------  233 (444)
Q Consensus       172 --------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~l~~~l--~~~~------  233 (444)
                              .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+.++|.++|+.++++.  .+.+      
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence                    223333445557788888899999999998865  6899999999999999999999865  2211      


Q ss_pred             -------chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhc
Q 013356          234 -------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKS  306 (444)
Q Consensus       234 -------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (444)
                             +.|+.|++.+++.++..++..+..+|.+.... ++..++.    .              +..++.     .. 
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~-~~~~~~~----~--------------~~~~~~-----~~-  242 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGS-DDFINSE----A--------------APPSKH-----GE-  242 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcc-ccchhhh----c--------------cccccc-----ch-
Confidence                   57899999888888877777777788553211 1100000    0              000000     00 


Q ss_pred             ccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccc-ccccCCcc-------h----hhhhhhh
Q 013356          307 IGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGY-NIYHMSNA-------D----MMFGGVT  374 (444)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~----~~~~~~~  374 (444)
                            ....++..+.++.+  .+.++.+++..++.+++++.+..|.+.+.. +.++.++.       .    .....+.
T Consensus       243 ------~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~  314 (477)
T TIGR01301       243 ------EAFFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLN  314 (477)
T ss_pred             ------hhhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHH
Confidence                  01112222333222  456778888889999998888888888765 34443211       1    1112233


Q ss_pred             cccchhhhhhhhhhhhhhccc
Q 013356          375 IVCGIVGTISGGFILDQMGAT  395 (444)
Q Consensus       375 ~~~~~~~~~~~g~l~dr~~~~  395 (444)
                      .+...+.+++-.++.+|+|+|
T Consensus       315 s~~~~i~s~~l~~l~~~~g~~  335 (477)
T TIGR01301       315 SVVLGITSIGMEKLCRGWGAG  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            333344555666677777643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.72  E-value=2.7e-16  Score=151.54  Aligned_cols=248  Identities=6%  Similarity=-0.080  Sum_probs=167.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCC-cchhHHHHHHHHHHHHhhhchh------hHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNP-FRLIGVGLSVWTFATAGCGSSF------DFWSIA  174 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------s~~~l~  174 (444)
                      ..+.+.+|+++..+|.+..+.-+.-++..++.|+++|    |+|| |+.++++.+..+++.++....+      .+..++
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4566778999999999999999999999999999999    6698 6677778887777765554432      134556


Q ss_pred             HHHHHhHhhhhhhhhccHHHhhhcC-CCCchhHHHHHHhhhcccccchhhhHHHHhh-------cccchhHHHHHHHHHH
Q 013356          175 ICRMLVGVGEASFISLAAPFIDDNA-PVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-------SHLNWRYAFWGEAILM  246 (444)
Q Consensus       175 ~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-------~~~~wr~~f~~~~~~~  246 (444)
                      +.-++.+++.+...+...++..|.. ++++|.+..++-..+.++|..+.+.+...+.       +..+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            6667778888888888999999999 5899999998877777777666555443321       1235777777777766


Q ss_pred             HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (444)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (444)
                      ++..+..++..+|.+.....+.+.+                                           +..+..+.++.+
T Consensus       191 ~~~~~~~~~~~~e~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~  227 (473)
T PRK10429        191 IVSTIITLRNVHEVYSSDNQVSAEG-------------------------------------------SHLTLKDIVALI  227 (473)
T ss_pred             HHHHHHHHcCceecCCccccccccc-------------------------------------------cCCCHHHHHHHH
Confidence            6655555554455321100000000                                           000112234456


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++||.++..+...++.....+....+.+.|.+...+.......+.....++.+++.++.+++.||+|+|+
T Consensus       228 ~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~  297 (473)
T PRK10429        228 YKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI  297 (473)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            7888888888777777777776666777666554443222223334445677888899999999999984

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.72  E-value=1.3e-15  Score=144.03  Aligned_cols=148  Identities=15%  Similarity=0.131  Sum_probs=122.5

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHHHHhHhhh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICRMLVGVGE  184 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~  184 (444)
                      .+.+++|+++.+.+.+.+.+.+...++.+++|+++||+ |||++++++.++..++.++.+..+ +...++++..+.++|.
T Consensus        35 yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~  114 (493)
T PRK15462         35 YLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGY  114 (493)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence            45677899999999999999999999999999999999 999999999999999987776543 2233444555556667


Q ss_pred             hhhhhccHHHhhhcCCCC--chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          185 ASFISLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      |...+...++++|.+|++  +|..+.++.+.+.++|..++|.+.+++.+.+|||+.|.+.++.. +..++.++
T Consensus       115 G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm-~l~li~~~  186 (493)
T PRK15462        115 GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM-IAGLVIFL  186 (493)
T ss_pred             ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH-HHHHHHHH
Confidence            777788889999999975  69999999999999999999999999999899999999876643 33333333

>TIGR01272 gluP glucose/galactose transporter

Probab=99.72  E-value=2.9e-16  Score=142.00  Aligned_cols=225  Identities=12%  Similarity=0.096  Sum_probs=154.6

Q ss_pred             hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc------------
Q 013356          165 GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH------------  232 (444)
Q Consensus       165 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~------------  232 (444)
                      +...+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|.+++.+...            
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            35678999999999999999999999999999999999999999999999999999999999887631            


Q ss_pred             ----cchhHHHHHHHHHHHHHHHHHHhh-ccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcc
Q 013356          233 ----LNWRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  307 (444)
Q Consensus       233 ----~~wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (444)
                          .+|+++|++.+.+.++..++..+. +||..    +++.++...                              +  
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~----~~~~~~~~~------------------------------~--  128 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ----EADVARVSS------------------------------G--  128 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC----ccccccccc------------------------------c--
Confidence                479999997777655555443332 13311    100000000                              0  


Q ss_pred             cchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhcccccccc--ccCCcchh-hhhhhhcccchhhhhh
Q 013356          308 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNI--YHMSNADM-MFGGVTIVCGIVGTIS  384 (444)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~  384 (444)
                            +     ....++.+++|.++...+..+++.....+...|.+.|+.+.  +|.++... ........+.++|+++
T Consensus       129 ------~-----~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~  197 (310)
T TIGR01272       129 ------D-----TTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFI  197 (310)
T ss_pred             ------c-----ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                  0     00012345778888888888888888999999999999754  57776655 5566777889999999


Q ss_pred             hhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc
Q 013356          385 GGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQV  442 (444)
Q Consensus       385 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (444)
                      ++++.||+++|+     .+..+.++.++..++....+..... ..+.+.+++....+|
T Consensus       198 ~~~l~~r~g~~~-----~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P  249 (310)
T TIGR01272       198 GSAVMPMISQGR-----YLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFP  249 (310)
T ss_pred             HHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHH
Confidence            999999999873     3444444444443333332222222 233334445444444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.70  E-value=2.3e-17  Score=138.23  Aligned_cols=311  Identities=12%  Similarity=0.041  Sum_probs=199.1

Q ss_pred             hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-
Q 013356           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-  143 (444)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-  143 (444)
                      ..++.+|+..+.+++-.-.-+..                 ..++.+|.+++.++..++.+.|..-..+.++++|++.|| 
T Consensus        44 m~lv~mc~lgfgsyfcyd~p~al-----------------q~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~  106 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYDAPGAL-----------------QIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR  106 (459)
T ss_pred             HHHHHHHHhcccceeecCCchhh-----------------hhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh
Confidence            34555666666666544333322                 255777888888899999999999999999999999997 


Q ss_pred             cCCcchhHHHHHHHHHHHHhhh---chhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356          144 HNPFRLIGVGLSVWTFATAGCG---SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (444)
                      +|.|..-++-+....++-++.+   ..+.+|.++++|++.|+|.-...++.+.|..-|+..|+.+.++|+.....-+|..
T Consensus       107 fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst  186 (459)
T KOG4686|consen  107 FGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST  186 (459)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhce
Confidence            7888877776666677776654   5789999999999999998888888899999999999999999999999999988


Q ss_pred             hhhhHHHHhhcccch------hH---HHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCccc
Q 013356          221 LGYVYGGVVGSHLNW------RY---AFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHV  291 (444)
Q Consensus       221 ~~~~l~~~l~~~~~w------r~---~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (444)
                      +--.+.+++.+..+=      +.   .+...+.......+.....+-    +  ..++++.....++....+        
T Consensus       187 vNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg----~--~D~rAerilh~e~g~~Ge--------  252 (459)
T KOG4686|consen  187 VNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG----L--SDDRAERILHLEEGFLGE--------  252 (459)
T ss_pred             eeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh----h--hhhHHHHHHhhhcCcccC--------
Confidence            777666666654220      11   111111111111111111100    0  001111000000000000        


Q ss_pred             CCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hh
Q 013356          292 SEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MF  370 (444)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  370 (444)
                                 +          .+    ..+. . -..|.+|...+..+++.....-+...-|.++++.+|+|+.++ ..
T Consensus       253 -----------~----------pk----Ltdv-~-~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i  305 (459)
T KOG4686|consen  253 -----------E----------PK----LTDV-N-TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNI  305 (459)
T ss_pred             -----------C----------cc----cccc-c-ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccch
Confidence                       0          00    0111 0 135778888888888888888888899999999999998776 44


Q ss_pred             hhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Q 013356          371 GGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS-CLTAFCLSSLYGFLALFTVGELLV  437 (444)
Q Consensus       371 ~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  437 (444)
                      .+.......+.+.+.|.++||.|++..    ++..+.+..... ..+.+..-++|..+.++.+.....
T Consensus       306 ~s~vy~Isav~spvfg~i~Dk~G~n~~----wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysll  369 (459)
T KOG4686|consen  306 LSTVYGISAVLSPVFGAISDKYGFNLW----WVASACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLL  369 (459)
T ss_pred             hhhhhhhhhhhhhhHHHhHhhhcceeh----hHHHHHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHH
Confidence            455566777888999999999999843    122222222222 222233344555555555554433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.69  E-value=8.1e-17  Score=128.36  Aligned_cols=137  Identities=28%  Similarity=0.381  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC
Q 013356          123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP  202 (444)
Q Consensus       123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  202 (444)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567888999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          203 QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       203 ~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      +|++..++.+....+|..+++.+++.+.+..+|++.+++.++..++..+..+++.||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999998999999999988877777666666554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.69  E-value=3.7e-15  Score=141.32  Aligned_cols=284  Identities=15%  Similarity=0.108  Sum_probs=203.0

Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH-HHHHHHHHHHhhhch-h-hHHHHHHHHHHhHhhhhhhhhccHH
Q 013356          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV-GLSVWTFATAGCGSS-F-DFWSIAICRMLVGVGEASFISLAAP  193 (444)
Q Consensus       117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~-~-s~~~l~~~r~l~G~~~g~~~~~~~~  193 (444)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++.+..+. + +++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445778889999999999999999999997765554 455555566666553 3 4544555666666788888889999


Q ss_pred             HhhhcCCCCch--------------------------hHHHHHHhhhcccccchhhhHHHHhhc--------ccchhHHH
Q 013356          194 FIDDNAPVPQK--------------------------TAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAF  239 (444)
Q Consensus       194 ~i~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~l~~~l~~--------~~~wr~~f  239 (444)
                      ++.|..+++++                          ++..+.-.....+|.++.-++.-.+..        ..+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999988                          888888888888888877766544321        13358899


Q ss_pred             HHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccc
Q 013356          240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQF  319 (444)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (444)
                      .+.++.-++..+..++++|+.++....++....                                       .....++.
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~g~~~l  270 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSY---------------------------------------LRFGFKRL  270 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhH---------------------------------------HHHHHHHH
Confidence            999998888888888888876553111111110                                       01334455


Q ss_pred             cccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchh
Q 013356          320 SQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISN  398 (444)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~  398 (444)
                      .+.++++.|.|......++++++.-+...+......|..+..|++..+. .+..+..+.+++|.++.+++.||+|.|..+
T Consensus       271 ~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~  350 (477)
T PF11700_consen  271 WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR  350 (477)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence            6667777788999999999999999999999999999999999998887 666777799999999999999999998432


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHhhhcc
Q 013356          399 AFKLLSAATFLGAISCLTAFC--------LSSLYGFLALFTVGELLVFATQV  442 (444)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  442 (444)
                         .+..+.++..+..+....        .++.+.++++..+.+.+.++.++
T Consensus       351 ---~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs  399 (477)
T PF11700_consen  351 ---TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQS  399 (477)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHH
Confidence               233333222222222222        45566666666666666666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.69  E-value=3.7e-16  Score=149.63  Aligned_cols=176  Identities=13%  Similarity=0.057  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (444)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~  144 (444)
                      ..+.++...++..++. ..+... +               .|.+.+++|+|+++++...+...+...+-.+ +|+++||+
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~-~---------------~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~   87 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLP-L---------------SPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF   87 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhh-h---------------hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence            3455666667777765 333322 1               2777888999999999999999999999666 99999999


Q ss_pred             C-----CcchhHHHHHHHH-HHHHhhhchhhHHHHH-HHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHH---HHHhhh
Q 013356          145 N-----PFRLIGVGLSVWT-FATAGCGSSFDFWSIA-ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL---SMFYMC  214 (444)
Q Consensus       145 G-----rr~~l~~~~~~~~-~~~~~~~~~~s~~~l~-~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~  214 (444)
                      +     ||+.++++.++.+ ++....+..++..... +.+++.+++.+...+..-++..|..+ +++....   ++....
T Consensus        88 ~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~  166 (468)
T TIGR00788        88 PLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGA  166 (468)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHH
Confidence            8     7888888877763 4444445445544444 48899999999999999999999998 5554433   333344


Q ss_pred             cccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          215 IPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       215 ~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      ..+|.++++.++|.+.+.++||..|++.+++.++..+ ..++.||+
T Consensus       167 ~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~  211 (468)
T TIGR00788       167 SATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF-VSNLSKER  211 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHHhcccc
Confidence            4589999999999999999999999999888776633 34455664

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.68  E-value=3.6e-15  Score=143.07  Aligned_cols=255  Identities=9%  Similarity=-0.033  Sum_probs=157.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc----CCcch-hHHHHHHHHHHHHhh-h----chh--hHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRL-IGVGLSVWTFATAGC-G----SSF--DFWSI  173 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~-l~~~~~~~~~~~~~~-~----~~~--s~~~l  173 (444)
                      +.+++.+|+++.++|.+.+...+..++..++.|+++||.    |||+. +..+.+...+..++. .    +++  ....+
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            557778899999999999999999999999999999997    66664 455555444444432 1    112  22334


Q ss_pred             HHHHHHhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhc-----ccccchhhhHHHHhhccc--chhHHHHHHHHH
Q 013356          174 AICRMLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCI-----PTGVALGYVYGGVVGSHL--NWRYAFWGEAIL  245 (444)
Q Consensus       174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~-----~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~  245 (444)
                      ++.-++.+++.+...+...++..+.... ++|.+..++-..+.     .+|..++|.+++......  +|.....+.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~  192 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIA  192 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHH
Confidence            4556677888888888888887877754 67888766655432     345555666655432211  122222223333


Q ss_pred             HHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchh
Q 013356          246 MLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKV  325 (444)
Q Consensus       246 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (444)
                      +++..++.+...||+.+.    +.++                                             ....+.++.
T Consensus       193 ~~~~~~~~~~~~~e~~~~----~~~~---------------------------------------------~~~~~~~~~  223 (448)
T PRK09848        193 GMVLYFICFKSTRENVVR----IVAQ---------------------------------------------PSLKISLQT  223 (448)
T ss_pred             HHHHHHHHHcCcEeccCC----CccC---------------------------------------------CCHHHHHHH
Confidence            333333333333432111    0000                                             001223556


Q ss_pred             cccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhh-hcccchhhhhhhhhhhhhhcccchhhHHHHH
Q 013356          326 LLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGV-TIVCGIVGTISGGFILDQMGATISNAFKLLS  404 (444)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~  404 (444)
                      +++||.++...+..++..........+.|.|+++..+.+.....+... ..++.+++.++.+++.||+++|     +.+.
T Consensus       224 l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----~~~~  298 (448)
T PRK09848        224 LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----NTFL  298 (448)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----HHHH
Confidence            789999999888888888888888888888988888776543322222 2355677888899999999987     3344


Q ss_pred             HHHHHHHHHH
Q 013356          405 AATFLGAISC  414 (444)
Q Consensus       405 ~~~~~~~~~~  414 (444)
                      .+.++.++..
T Consensus       299 ~g~~~~~i~~  308 (448)
T PRK09848        299 IGALLGTCGY  308 (448)
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.65  E-value=9.8e-15  Score=135.90  Aligned_cols=262  Identities=18%  Similarity=0.150  Sum_probs=182.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +..-++.|+|..|+|.+.++..+...++++++|.++||++ +|+++.+..++.++........++++.+++.-++..+..
T Consensus        26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~  105 (400)
T PF03825_consen   26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFF  105 (400)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            5667778999999999999999999999999999999986 677777878888887777788889999988888888888


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH-HHHhhcccc---hhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY-GGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l-~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      ....|...++..++..  +++.-.|-.....++|.+++... ++.+....+   ..+.+++.++..++..... +.+|+.
T Consensus       106 ~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~  182 (400)
T PF03825_consen  106 SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKT  182 (400)
T ss_pred             ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCC
Confidence            8888888888888875  34444566666667777666443 233332222   2345566655544444333 334665


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      +++...+++.++                                             ...++..+++|+|++....+..+
T Consensus       183 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~llk~~~~~~Fll~~~  217 (400)
T PF03825_consen  183 PPKRSAKESVKK---------------------------------------------LLGLDALKLLKNPRFLVFLLAAF  217 (400)
T ss_pred             ccccccCCCccc---------------------------------------------ccchHHHHHhcCccHHHHHHHHH
Confidence            422111111100                                             00122346789999999888888


Q ss_pred             HHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFC  419 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (444)
                      +.......+..+.+.|+++..+.+.... ....+..+++++.....+++..|+|.+     +++..+.+..++=..+...
T Consensus       218 l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~-----~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  218 LIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK-----WLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999998665543333 333455678888888889999988887     5566666666665555544


Q ss_pred             h
Q 013356          420 L  420 (444)
Q Consensus       420 ~  420 (444)
                      .
T Consensus       293 ~  293 (400)
T PF03825_consen  293 F  293 (400)
T ss_pred             h
Confidence            4

>PRK11462 putative transporter; Provisional

Probab=99.64  E-value=2.1e-14  Score=137.55  Aligned_cols=242  Identities=12%  Similarity=-0.013  Sum_probs=161.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCCcc-hhHHHHHHHHHHHHhhhchhh------HHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFR-LIGVGLSVWTFATAGCGSSFD------FWSIA  174 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~s------~~~l~  174 (444)
                      ..+.+..|+++..+|.+..+.-+--++..|+.|.++||    +|||+ .++++.+..+++.+++-..++      ...++
T Consensus        34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~  113 (460)
T PRK11462         34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA  113 (460)
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            34556779999999999999999999999999999996    68754 556677777777766554442      34456


Q ss_pred             HHHHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcc-------cchhHHHHHHHHHH
Q 013356          175 ICRMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILM  246 (444)
Q Consensus       175 ~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~wr~~f~~~~~~~  246 (444)
                      +.-++..++.........++..|..+ +++|.+..++...+..+|..+++.+...+...       .+|+....+.+++.
T Consensus       114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~  193 (460)
T PRK11462        114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVA  193 (460)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            66677788888888899999999998 68999999999999999888877765444322       35887777777766


Q ss_pred             HHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhc
Q 013356          247 LPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVL  326 (444)
Q Consensus       247 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (444)
                      ++..++.++..+|..+.    ++++.                                             +..+.++..
T Consensus       194 ~i~~~i~~~~~kE~~~~----~~~~~---------------------------------------------~~~~~l~~~  224 (460)
T PRK11462        194 FMMLAFCFFTTKERVEA----PPTTT---------------------------------------------SMREDLRDI  224 (460)
T ss_pred             HHHHHHHHhcceeccCC----CccCC---------------------------------------------CHHHHHHHH
Confidence            66555555444442111    00000                                             012234566


Q ss_pred             ccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcccc
Q 013356          327 LQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ++||.++......++..............|.+...+.......+.....++.+++.++++++.||+++|.
T Consensus       225 ~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~  294 (460)
T PRK11462        225 WQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT  294 (460)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence            7888877766555444444333333333333322332222223334555777888999999999999873

>TIGR00889 2A0110 nucleoside transporter

Probab=99.63  E-value=2.5e-15  Score=142.27  Aligned_cols=147  Identities=16%  Similarity=0.210  Sum_probs=128.5

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh----hHHHHHHHHHHhHhhhhhhhhcc
Q 013356          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLA  191 (444)
Q Consensus       116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~~  191 (444)
                      .+..+...++..++..++.++.|+++||+|||+++.++.++.+++..+.....    +++.+++.+++.|++.+...+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~  329 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG  329 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999988876666532    34667788999999999888999


Q ss_pred             HHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcc------cchhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356          192 APFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSH------LNWRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (444)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~------~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (444)
                      ..++.|++|+++|+++.++.+ ...++|.++||+++|.+.++      +||+..|.+.+++.++..++.+++.||+.+
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999997 67889999999999999886      469999999998888888888888777543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.62  E-value=2.8e-14  Score=131.91  Aligned_cols=186  Identities=16%  Similarity=0.131  Sum_probs=147.7

Q ss_pred             cchhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccc-ccccCccchhHHHHHHHHHHHHHhhhhhhh
Q 013356           62 TPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASL  140 (444)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l  140 (444)
                      .+||.+.++.+..++..++.+++....                -|++++ |.+.+.+..|++.++..+|.+++++.+|+.
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~----------------wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~W   94 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSM----------------WPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIW   94 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeec----------------chhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccc
Confidence            344577777777788777766654331                155554 577788889999999999999999999999


Q ss_pred             hhhcCC-cchhHHHHHHHHHHHHhh-hc---hh-hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhh
Q 013356          141 AKSHNP-FRLIGVGLSVWTFATAGC-GS---SF-DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMC  214 (444)
Q Consensus       141 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~---~~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  214 (444)
                      ..|.|. |+-++.|.++..++.++. +.   .+ ..+.++++|++.|+|.| .....-+|+++....++|.++++....+
T Consensus        95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~  173 (488)
T KOG2325|consen   95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGG  173 (488)
T ss_pred             ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhH
Confidence            999996 778899999999999987 32   23 67889999999999977 6678899999999899999999999999


Q ss_pred             cccccchhhhHHHHhhcc--c-----------chhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          215 IPTGVALGYVYGGVVGSH--L-----------NWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       215 ~~~G~~~~~~l~~~l~~~--~-----------~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      ..+|.++||.++..+...  -           -+..+-|+.+++.++..+...++++|.++..
T Consensus       174 ~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  174 FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            999999999888666431  1           1345667788888888887777778866554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.61  E-value=1.1e-14  Score=133.04  Aligned_cols=272  Identities=14%  Similarity=0.117  Sum_probs=163.6

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHH--H-HHHHhhhchh----hHH-HHHHHHH
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW--T-FATAGCGSSF----DFW-SIAICRM  178 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~--~-~~~~~~~~~~----s~~-~l~~~r~  178 (444)
                      .+.++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-++....+.  . ...+...+.+    |.+ ..+++-+
T Consensus        33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i  112 (412)
T PF01306_consen   33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGI  112 (412)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTT
T ss_pred             HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345568999999999999999999999999999999999777554433222  1 2222222322    322 2233334


Q ss_pred             HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      ..|+......++.-+++.++.  ++.+.=.|-...+.++|.+++..++|.+.+ .+-+..||+..+.+++..++.++..|
T Consensus       113 ~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~  189 (412)
T PF01306_consen  113 YLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKP  189 (412)
T ss_dssp             TTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS--
T ss_pred             HHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            445544555555666665554  344555667777888899999999999886 45577888877766666665555544


Q ss_pred             CcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHH
Q 013356          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (444)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      +.++.....+.....                                         +.....++..+++|+|++|.+.+.
T Consensus       190 ~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~l~k~~~fw~~~l~  228 (412)
T PF01306_consen  190 DVPPQAEVADALGAK-----------------------------------------KDKVSLKDVLSLFKMRNFWFFVLF  228 (412)
T ss_dssp             -SSSSS-SSTTSSS-----------------------------------------------HHHHHHHTTSHHHHHHHHH
T ss_pred             cCchhhhhhcccccC-----------------------------------------CCCCcHHHHHHHhcchhHHHHHHH
Confidence            433221111110000                                         000012345678899999998887


Q ss_pred             HHHHHHHHHHHHhhccccccccccC---Ccchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 013356          339 YIAYNFVIGAYSYWGPKAGYNIYHM---SNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISC  414 (444)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  414 (444)
                      .......+..+....|.|+...+..   +.... .+.++..+.+++...+..++.+|+|.|     +.++.+.++..+=.
T Consensus       229 v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k-----~~Lllag~i~~iRi  303 (412)
T PF01306_consen  229 VIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK-----NLLLLAGVIMAIRI  303 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH-----hHHHHHHHHHHHHH
Confidence            7766666777665566665543322   11222 444555578888899999999999998     55666666666666


Q ss_pred             HHHHHhhhHHHHH
Q 013356          415 LTAFCLSSLYGFL  427 (444)
Q Consensus       415 ~~~~~~~~~~~~~  427 (444)
                      ......++.+...
T Consensus       304 ~~~~~~~~~~~i~  316 (412)
T PF01306_consen  304 IGSGFATNPWVIS  316 (412)
T ss_dssp             HHHHT--SHHHHH
T ss_pred             HHHhhhcchHHHH
Confidence            6666666655443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=1.2e-14  Score=140.88  Aligned_cols=160  Identities=10%  Similarity=0.022  Sum_probs=121.4

Q ss_pred             cc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh---hhchhhHHHHHHHHHHhH
Q 013356          106 SG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVG  181 (444)
Q Consensus       106 ~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~s~~~l~~~r~l~G  181 (444)
                      |. +++++|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++..++.+.   ...+++...+++++++.|
T Consensus       274 p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  353 (490)
T PRK10642        274 PSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLA  353 (490)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            44 44677888888888888889999999999999999999999988887654433322   223456778888999999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      ++.+........++.|.+|++.|+.++++.+....++..++|.+.+++.+.. +|+.++++..+++++..+..+ +.||+
T Consensus       354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes  432 (490)
T PRK10642        354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKET  432 (490)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-Hhccc
Confidence            8887777778888999999999999999754445555678888888877654 478777776666665555444 45998


Q ss_pred             ccCCCC
Q 013356          261 LKGFAP  266 (444)
Q Consensus       261 ~~~~~~  266 (444)
                      +++..+
T Consensus       433 ~~~~~~  438 (490)
T PRK10642        433 ANRPLK  438 (490)
T ss_pred             cCCCCC
Confidence            876543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.60  E-value=1.3e-13  Score=121.84  Aligned_cols=235  Identities=12%  Similarity=0.100  Sum_probs=153.3

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~  187 (444)
                      +-+++|.++.|++.+....+....+...+.|.++||+|||+.-++-+++.+++++ +-..++++.++++|++.|++.+..
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH
Confidence            4467999999999999999999999999999999999999999999999999886 455688999999999999999999


Q ss_pred             hhccHHH-hhhcCCC----CchhHHHHHHh-hhcccccchhhhHHHHhhcccch--hHHHHHHHHHHHHHHHHHHhhccC
Q 013356          188 ISLAAPF-IDDNAPV----PQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNW--RYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       188 ~~~~~~~-i~~~~~~----~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~w--r~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      +++-.++ +.|+-..    +..+...+... ...++-.+++.+++.++.+..+.  ..+|....++.++..+++....+|
T Consensus       139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            8888776 4666332    22222222222 22223334445555566655544  788888877777776666655566


Q ss_pred             cccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHH
Q 013356          260 QLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGY  339 (444)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (444)
                      +.....+.   ...                                          .+...+..+.+.++|+.+.+.+..
T Consensus       219 Nyg~~~~~---~~~------------------------------------------~~~~~~a~~~i~~d~ril~LG~~q  253 (354)
T PF05631_consen  219 NYGDTSSS---SSL------------------------------------------SGSFREAWRAILSDPRILLLGLIQ  253 (354)
T ss_pred             cCCCcccc---cch------------------------------------------HHHHHHHHHHHHcCchhHHHHHHH
Confidence            54321110   000                                          001122344566788988888888


Q ss_pred             HHHHHHHHHHH-hhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhh
Q 013356          340 IAYNFVIGAYS-YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILD  390 (444)
Q Consensus       340 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  390 (444)
                      .+.-...|.+. .|.|.+-.+..+. +.. .+.+.+.++.++|+.+..++..
T Consensus       254 slFE~smy~FVflWtPaL~~~~~~~-P~G-lIFssFM~a~MlGS~lf~~l~s  303 (354)
T PF05631_consen  254 SLFEGSMYLFVFLWTPALDPDDEEL-PLG-LIFSSFMVAMMLGSSLFSRLLS  303 (354)
T ss_pred             HHHHHHHHHheeeeeceecCCCCCC-Cch-HHHHHHHHHHHHHHHHHHHHHh
Confidence            77777776665 4667665222111 111 2223334455566655544443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.59  E-value=1.7e-13  Score=126.53  Aligned_cols=285  Identities=10%  Similarity=0.026  Sum_probs=203.6

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCC-cchhHHHHHHHHHHHHhhhchhh------HHHHHHH
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNP-FRLIGVGLSVWTFATAGCGSSFD------FWSIAIC  176 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Gr-r~~l~~~~~~~~~~~~~~~~~~s------~~~l~~~  176 (444)
                      +.+.+|+++..+|.+..+--+--++..|+.|.+.||    +|| |+.++.+.+..++.+.++-.+++      ....++.
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt  118 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT  118 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence            556779999999999998888899999999999995    674 45677788888888888877763      4455677


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhc-------ccchhHHHHHHHHHHHH
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLP  248 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~wr~~f~~~~~~~~~  248 (444)
                      -++.+++.........++..|+.+ ++||.+..++-..+.++|.++...+...+..       ..||+..-.+.+++.++
T Consensus       119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i  198 (467)
T COG2211         119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI  198 (467)
T ss_pred             HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence            788999999999999999999986 5889999999999999997766655544432       35899888888888888


Q ss_pred             HHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhccc
Q 013356          249 FAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQ  328 (444)
Q Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (444)
                      ..+.+++-.+|...+..+.++..                                            ..+..+++...++
T Consensus       199 ~~l~~~~~v~ER~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~  234 (467)
T COG2211         199 LLLFCFFNVKERVVETQPTKTGV--------------------------------------------KLKLKDSFLLIFK  234 (467)
T ss_pred             HHHHHHHHhhcccCccccCcccc--------------------------------------------cccHHHHHHHHHc
Confidence            88777777666443211111100                                            0011233446779


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHH
Q 013356          329 EKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAAT  407 (444)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~  407 (444)
                      |+.+...++...+.....+........|.+...|.+.... ........+.+.+.++...+.+|+|+|     +....+.
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----~~~~~~~  309 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----KLFLIGL  309 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----HHHHHHH
Confidence            9999998888888887777777777788777666665444 333444455666688999999999998     5566666


Q ss_pred             HHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhc
Q 013356          408 FLGAISCLTAFCLS--SLYGFLALFTVGELLVFATQ  441 (444)
Q Consensus       408 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  441 (444)
                      ++.++..+...+.+  +.+..++..++.+.+.....
T Consensus       310 ~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~  345 (467)
T COG2211         310 LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIAN  345 (467)
T ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccc
Confidence            66666655555544  34444555455555544443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.59  E-value=2.3e-14  Score=135.00  Aligned_cols=149  Identities=15%  Similarity=0.098  Sum_probs=125.9

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~  186 (444)
                      .+++++|.++.+.+++.+...++..++.+++|+++||+|||+.+..+.+...+........++++.+++.+++.+++.|.
T Consensus       242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~  321 (393)
T PRK15011        242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGI  321 (393)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45677899999999998888888888999999999999999988887776666555555677888888899999888887


Q ss_pred             hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      ..+....+..|.+| ++|+++.++++....+|..+++.+++.+.+++||+..|++.+++.++..++.++.
T Consensus       322 ~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        322 LGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            77777888899998 5699999999999999999999999999998999999998887776665555443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.58  E-value=1.4e-13  Score=123.27  Aligned_cols=261  Identities=15%  Similarity=0.112  Sum_probs=193.9

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc-hhHHHHHHHHHHHHhhhchhh--HHH-HHHHHHHhHhhhhhhhhcc
Q 013356          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFD--FWS-IAICRMLVGVGEASFISLA  191 (444)
Q Consensus       116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~s--~~~-l~~~r~l~G~~~g~~~~~~  191 (444)
                      .+..+...++..+-.++.+++.|.++|+.|+|| .+-....+..++.++..+.++  ++. .++.-.+..++.....+..
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            456788888999999999999999999999555 555556666666666666654  444 4566788889999999999


Q ss_pred             HHHhhhcCCCCchhHHHHHHhhhcccccchhhhHH--HHh-h---------------cccchhHHHHHHHHHHHHHHHHH
Q 013356          192 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG--GVV-G---------------SHLNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~--~~l-~---------------~~~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      .+++.+..++++-++..++-.....+|.++.-++.  ... .               +...-|..+.+.++..++..+..
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence            99999999999888888887777778877665543  111 1               23456888888888888887777


Q ss_pred             HhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchh
Q 013356          254 FVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV  333 (444)
Q Consensus       254 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (444)
                      ++..|+.++.. .+..                                        +...+.+++.++++++..+++.+.
T Consensus       217 ~~~v~~~~~~~-~~~~----------------------------------------~~l~~g~k~L~~t~k~i~~~~~i~  255 (438)
T COG2270         217 ILNVHDAEKIS-SPPP----------------------------------------TALRNGFKELKSTFKEIRGRKNLV  255 (438)
T ss_pred             Hhccccccccc-ccch----------------------------------------HHHHHHHHHHHHHHHHHhcccchH
Confidence            77666543311 0000                                        011144556677788888889999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Q 013356          334 VNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAI  412 (444)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  412 (444)
                      ...++.+++.=+.++...+...|..+.+|++..+. .+.....+.+++|+++.|++.||++.|     .++..+.++..+
T Consensus       256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k-----~vl~~~lvi~~~  330 (438)
T COG2270         256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK-----PVLMIGLVILSI  330 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeehHHHHHHHH
Confidence            99999999998899999999999998899998888 667777899999999999999999998     345555555555


Q ss_pred             HHHHHHHhhh
Q 013356          413 SCLTAFCLSS  422 (444)
Q Consensus       413 ~~~~~~~~~~  422 (444)
                      .++...+...
T Consensus       331 ~~~~~~~~~~  340 (438)
T COG2270         331 AALYLIFLEG  340 (438)
T ss_pred             HHHHHHHccc
Confidence            5555544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.55  E-value=2.7e-14  Score=135.92  Aligned_cols=148  Identities=10%  Similarity=0.033  Sum_probs=129.7

Q ss_pred             cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhcc
Q 013356          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLA  191 (444)
Q Consensus       112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~  191 (444)
                      .+.+..+.|++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666788999999999999999999999999999999999999999998999999999999999999999988888888


Q ss_pred             HHHhhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          192 APFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      ..++.|.+|++.|+...+. ++....+|.++++.+.|++.+.+|||..|.+.+++.++..++.++..++
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999988877655 5677889999999999999999999999999888877766666555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=1.5e-14  Score=135.69  Aligned_cols=144  Identities=12%  Similarity=0.019  Sum_probs=126.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH--HHHHHHHHHhHhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~~  183 (444)
                      +.+.++++.++.+.+++.+.+.++..+++++.|++.||+|||+.+.++.++..++.++..+.++.  ..+++..++.|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  308 (377)
T TIGR00890       229 KPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT  308 (377)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence            44567788888889999999999999999999999999999999999999998888877776643  3345667888998


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHH
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~  249 (444)
                      .+...+..+.++.|.+|+++|+++.++.+....+|..++|.+++.+.++.||++.|.+.+++.++.
T Consensus       309 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            888888889999999999999999999999999999999999999999999999999887765543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.54  E-value=6.6e-14  Score=132.46  Aligned_cols=146  Identities=16%  Similarity=0.139  Sum_probs=127.4

Q ss_pred             cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (444)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~  189 (444)
                      ++.+.  .+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+..++
T Consensus       244 ~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        244 AARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFP  321 (399)
T ss_pred             HHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHH
Confidence            44454  3456777888999999999999999999999999999988888888888888988888999999999998888


Q ss_pred             ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      .....+.|.+|+++|+++.++++....+|..+++.+.+.+.++.||++.|++.+++.++..+..+++.
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888889999999999999999999999999999999999989999999998888777666655543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.52  E-value=6.5e-14  Score=139.00  Aligned_cols=140  Identities=9%  Similarity=-0.041  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcC
Q 013356          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (444)
Q Consensus       120 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  199 (444)
                      .+...+..++.+++.++.|+++||+|||++++++.++.+++.++.++.++...+++.+++.|++.++.++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            45566777899999999999999999999999999999999999999998888889999999988888999999999999


Q ss_pred             CCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      |.+.|++++|+.+....+|.+++|++++.+.+. +...+|++.+++.++.+++.+ ++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence            999999999999999999999999999887763 456788888777666555554 447743

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.52  E-value=1.5e-13  Score=128.94  Aligned_cols=147  Identities=12%  Similarity=0.159  Sum_probs=126.6

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~  186 (444)
                      .+.+++|.++.+.+++.+...+...++.++.|++.||+|||+.+.++.++..+..+...+.++.+.+++.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999988888777888999999999999999999888877776666666778888888899999999998


Q ss_pred             hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ..+....++.|..| ++++++.++.+....+|..++|.+++.+.+..||+..|++.+++.++..++..
T Consensus       305 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       305 LAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            88888899999987 46779999999999999999999999999989999999998887766655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.52  E-value=1e-12  Score=120.46  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=129.2

Q ss_pred             cccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhh
Q 013356          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFI  188 (444)
Q Consensus       112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~  188 (444)
                      +|+++++..-+.+.|.--.-+..+++|+++||+ |+|+.++.|.++..+|-++.+.+.  +...++++-.+.++|.|.+-
T Consensus        56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K  135 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK  135 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence            459998888888888888888999999999995 999999999999999999999884  78899999999999999999


Q ss_pred             hccHHHhhhcCCCC--chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          189 SLAAPFIDDNAPVP--QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       189 ~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      +....+++|.+|++  +|-..+++++++.++|..++|++.+++.+++||...|.+.++-....++..++.
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999864  477789999999999999999999999999999999999887766655544443

>PRK12382 putative transporter; Provisional

Probab=99.52  E-value=1.5e-13  Score=129.65  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=128.4

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~  187 (444)
                      +.++.+.+  ..++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.++++.++.|++.+..
T Consensus       242 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  319 (392)
T PRK12382        242 YFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLI  319 (392)
T ss_pred             HHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhH
Confidence            33445554  3566677788888999999999999999999999999999998888888888888889999999999988


Q ss_pred             hhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      .+.....+.|.+|+++||++.++.+....+|..++|.+++.+.++.||++.|.+.+++.++..++.++.
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            888888999999999999999999999999999999999999999999999999988877776666554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.51  E-value=7.3e-12  Score=113.97  Aligned_cols=321  Identities=10%  Similarity=-0.015  Sum_probs=202.5

Q ss_pred             cccccc-cccCccchh-HHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          106 SGIQGD-FKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~-~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      |.+.+. .|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++-|++
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~  107 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA  107 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence            666664 788887764 455566667788899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc--ccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      .+ ...+..+|+-...|+++-.++.+...++.-+|..++.++|..+..  ..+++..+.+......+..+.. +++|..+
T Consensus       108 ~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~fLP~~~  185 (412)
T PF01770_consen  108 TA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LFLPMPK  185 (412)
T ss_pred             HH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence            77 467888999888999999999999999999999999999988875  3446666555544434444444 4445543


Q ss_pred             cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHH
Q 013356          262 KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIA  341 (444)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (444)
                      +..--.++...... ..+.+.++.....+..      .+.++.............+..++++++..++|.++...+-+.+
T Consensus       186 ~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~  258 (412)
T PF01770_consen  186 RSLFFHRKPPAEQD-ANESESDKMNESPESS------SSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAF  258 (412)
T ss_pred             cccceeccCccccc-cccccccccccccccc------cccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            32111111100000 0000000000000000      0000111111111223445567778888899999888888888


Q ss_pred             HHHHHHHHHhhccccccccccCCcch---hhhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 013356          342 YNFVIGAYSYWGPKAGYNIYHMSNAD---MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF  418 (444)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (444)
                      ...+++.+..|.....++....+...   ..+-+...+.+.++.+..|++-.+..+...   ..+....++.+..++++.
T Consensus       259 atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~---l~l~~~S~l~a~~L~lm~  335 (412)
T PF01770_consen  259 ATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE---LALGVFSLLQAGLLFLMS  335 (412)
T ss_pred             HHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            88877777776666555541111111   123334445566677777777433333211   334445555566666667


Q ss_pred             HhhhHHHHHHHHHHHHHHHh
Q 013356          419 CLSSLYGFLALFTVGELLVF  438 (444)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~  438 (444)
                      ..++.|...+...+......
T Consensus       336 ~t~~Iwv~Y~~yIif~~~y~  355 (412)
T PF01770_consen  336 FTGNIWVCYAGYIIFRSLYM  355 (412)
T ss_pred             HhhHHHHHHHHHHHHHHHHH
Confidence            77788877777666655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=2.5e-13  Score=129.19  Aligned_cols=156  Identities=17%  Similarity=0.108  Sum_probs=136.8

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.++ +|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.|++.
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  326 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLS  326 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence            445455 8999999999999999999999999999999988888888888888888888888888888888999999998


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      +...+...+++.|..|++.||++.+++.....+|..+|+.+.|.+.+.+|++..+++.++..++..++.....|+.+
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            88778888999999999999999999999999999999999999999999999999888877776666666656533

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.50  E-value=1.5e-13  Score=127.56  Aligned_cols=149  Identities=19%  Similarity=0.168  Sum_probs=137.7

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc-hhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh
Q 013356          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-LIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~  183 (444)
                      |.+.++ +|.++.+.++..+...++..++.++.|++.||+|||+ .+..+.++..++.+.....++.+.+++..++.|++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~  278 (352)
T cd06174         199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFG  278 (352)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            445444 4889999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      .+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+|+..+.+.+++.++..+..+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999999999999999999999999989999999999988777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.50  E-value=1.9e-13  Score=128.35  Aligned_cols=145  Identities=14%  Similarity=0.031  Sum_probs=130.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      |.+.+|+|.++.+.|++.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++.+.+++.+++.|+..+
T Consensus       229 ~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~  308 (382)
T TIGR00902       229 AIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFA  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            44446799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVL  252 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~  252 (444)
                      ...+....++.+. |+++|+...++++ ...++|.++++.++|++.+++|+ ..|++.++++++..++
T Consensus       309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999998 9899999999986 57789999999999999999996 6677777776655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.49  E-value=5.5e-12  Score=113.40  Aligned_cols=241  Identities=11%  Similarity=0.029  Sum_probs=165.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-----CcchhH-HHHHHHHHHHHhhhch-----h------
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-----PFRLIG-VGLSVWTFATAGCGSS-----F------  168 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~~-----~------  168 (444)
                      ..+..|++++....+...++..+.. ...+.+|+.+|+.+     ||.-++ .|.++...+..+..++     .      
T Consensus         4 RVMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    4 RVMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             hhHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            4466789999999999999888765 46999999999998     776555 4555555555443331     2      


Q ss_pred             --h-HH--HHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchh-HHHHH-
Q 013356          169 --D-FW--SIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR-YAFWG-  241 (444)
Q Consensus       169 --s-~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr-~~f~~-  241 (444)
                        . .+  ...+.-.+.|+|.+...+...++++|..|+++|+++.++......+|.+++..+.+.+.+.++-. ..-.+ 
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~  162 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ  162 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence              2 22  23445678899999999999999999999999999999999999999999999999888776532 22222 


Q ss_pred             -HHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhcccc
Q 013356          242 -EAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFS  320 (444)
Q Consensus       242 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (444)
                       .+++.+.+.++..+- .|.+.....+.+++                                           ...++.
T Consensus       163 ~~a~i~~~l~~ia~wg-~E~r~~~~~~~~~~-------------------------------------------~~~~f~  198 (403)
T PF03209_consen  163 GVALIALLLNLIALWG-QEPRRSRRAAAAER-------------------------------------------PRPPFR  198 (403)
T ss_pred             HHHHHHHHHHHHHHHh-cccCCcccccCCCC-------------------------------------------CCccHH
Confidence             222233333333332 22211111100000                                           000112


Q ss_pred             ccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhh
Q 013356          321 QDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQ  391 (444)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr  391 (444)
                      +.++++..+|....+....+.....++.-...+-.|..+.+|++..+. .+......+..+|....|++..|
T Consensus       199 ~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~  270 (403)
T PF03209_consen  199 EAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR  270 (403)
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334556677888877777777777777777788889999999997766 66777778888898888888774

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.49  E-value=1.9e-13  Score=129.65  Aligned_cols=151  Identities=14%  Similarity=0.063  Sum_probs=128.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      |.+.++.|.++.+.+++.+.+.++..++.++.|++.||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++.+
T Consensus       244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (406)
T PRK11551        244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV  323 (406)
T ss_pred             HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            66667789999999999999999999999999999999999999988877777777777777888888888889999888


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhh
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      ...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.++. +|...+++.....+...+..++.
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999999999998764 45666666655555544444443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.49  E-value=2e-13  Score=129.63  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=125.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  198 (444)
                      .+.+.+++.++..++.+.+|++.||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+...+++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666777888889999999999999999999999988888888888888899999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      .|+++||+.+++......+|..+||.+++.+.+..||++.|++.+++.++..+..++..+
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888877776665443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.48  E-value=3.7e-13  Score=131.19  Aligned_cols=143  Identities=13%  Similarity=0.056  Sum_probs=114.6

Q ss_pred             cccc-cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--hhHHHHHHHHHHhHh
Q 013356          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--FDFWSIAICRMLVGV  182 (444)
Q Consensus       106 ~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~  182 (444)
                      |.+. +++|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++....  .+.+.+.+..++.+.
T Consensus       299 p~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (496)
T PRK03893        299 PTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQM  378 (496)
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence            4444 6889999999999999999999999999999999999999888877766665544332  344444455555544


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  248 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~  248 (444)
                      ......+..+.++.|.+|+++|++.+++.+....+|..+||.+++.+.+++||+..+...+....+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            434455677889999999999999999999999999999999999999999999888766544333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.47  E-value=5.7e-13  Score=125.82  Aligned_cols=148  Identities=14%  Similarity=-0.029  Sum_probs=113.4

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcch--hH------HHHHHHHHHHHhhhchhhHHHHHHHHH
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL--IG------VGLSVWTFATAGCGSSFDFWSIAICRM  178 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~--l~------~~~~~~~~~~~~~~~~~s~~~l~~~r~  178 (444)
                      .+++++|.++.+.+++.+...++..++.++.|+++||+|||+.  ..      .+.++..+........++.+..+....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (399)
T TIGR00893       241 YLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVA  320 (399)
T ss_pred             HHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            3556788899999999999999999999999999999999961  11      111112222222223345555555555


Q ss_pred             HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 013356          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      +.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |+..|++.+++.++..+..++
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            5555555 788999999999999999999999999999999999999999999888 999999888877766655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.46  E-value=1.2e-12  Score=123.33  Aligned_cols=150  Identities=17%  Similarity=0.159  Sum_probs=124.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||++. .+..+..++. .+....++.+.++++.++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            445666889999999999999999999999999999999988754 4444444443 33455678888888999999998


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      +...+.....+.|..| ++|+++++++.....+|..+||+++|.+.+++|+|..|++.+++.++..+..++..
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            7777777888888876 78999999999999999999999999999999999999999888877666665554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.46  E-value=1.3e-13  Score=132.31  Aligned_cols=146  Identities=14%  Similarity=0.167  Sum_probs=122.4

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchhHH--HHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  181 (444)
                      |.+.+++|.+..+.+++.++..++..+++++.|+++||.  ++|+...+  +.++.+++.++....++++.+++.+++.|
T Consensus       265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G  344 (455)
T TIGR00892       265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFG  344 (455)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            455567899999999999999999999999999999984  33433333  34444455556667889999999999999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHH
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~  251 (444)
                      ++.+...+...+++.|.+|++++++..++++....+|.++||.++|.+.+.. +|++.|++.+++.++..+
T Consensus       345 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       345 LSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877 599999998887665444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.45  E-value=5.4e-13  Score=129.39  Aligned_cols=155  Identities=8%  Similarity=-0.077  Sum_probs=124.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-----hh------hHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SF------DFWSIA  174 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~------s~~~l~  174 (444)
                      |.+.+++|.+..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++     .+      +...+.
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence            6677888998888899999999999999999999999999999999998888877776652     11      233333


Q ss_pred             HHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       175 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ...++.+.......+....++.|.+|+++|+++.++......+|.++++.+.+.+.++.+|++.|++.++++++..++.+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence            33333333333345667788899999999999999999999999999999999999888999999999888888777776


Q ss_pred             hhccCc
Q 013356          255 VIKPLQ  260 (444)
Q Consensus       255 ~~~p~~  260 (444)
                      ++.||.
T Consensus       468 ~~~~~~  473 (481)
T TIGR00879       468 FFLPET  473 (481)
T ss_pred             eecccC
Confidence            666663

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.45  E-value=1.2e-12  Score=123.25  Aligned_cols=155  Identities=12%  Similarity=0.131  Sum_probs=123.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-SFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.+++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++... .++...+.  -++.|++.
T Consensus       229 p~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~  306 (393)
T PRK09705        229 PAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGL  306 (393)
T ss_pred             HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhc
Confidence            4455568999999999999999999999999999999999999999888877777665543 33322222  24568888


Q ss_pred             hhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhccCccc
Q 013356          185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLK  262 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~  262 (444)
                      +...+.......+..+ +++|++..++.+....++..++|.+.+++.++.| |+..|.+.++.+++..+..+.+.||++.
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            8877877777777775 5789999999999999999999999999999875 8888888887777777666677677543

>PRK03699 putative transporter; Provisional

Probab=99.45  E-value=9.6e-13  Score=124.16  Aligned_cols=149  Identities=14%  Similarity=0.127  Sum_probs=126.8

Q ss_pred             ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+ ++++|+|+.+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.
T Consensus       229 p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  308 (394)
T PRK03699        229 PEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFS  308 (394)
T ss_pred             HHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            444 4678999999999999999999999999999999999999998888887777777777778877777888999988


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      +..++...++..|..| ++++...+.......+|..++|.+.+++.+..||+..+++.+++.++..+....
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        309 SAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            8888888888888776 556788888988999999999999999999999999999888776666554433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.44  E-value=7.5e-13  Score=127.71  Aligned_cols=149  Identities=12%  Similarity=-0.006  Sum_probs=116.3

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh--hhchhhHHHHHHHHHHhHhhh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG--CGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      .+++++|.|..+.++..+.+.++..++.+++|+++||+|||+.+.....+..++..+  ....++...+.+.+++.|++.
T Consensus       284 yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  363 (467)
T PRK09556        284 YAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLV  363 (467)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999999999877655444443322  233456667778888888654


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhc------------ccchhHHHHHHHHHHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGS------------HLNWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~------------~~~wr~~f~~~~~~~~~~~~  251 (444)
                      ............|.+|+++||.+.|+.+....+ |..++|.+.|.+.+            ..+|+..|++..+..++..+
T Consensus       364 ~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~  443 (467)
T PRK09556        364 FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCIC  443 (467)
T ss_pred             hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHH
Confidence            433333346777999999999999999988886 77999999999998            57899999988777666555


Q ss_pred             HHHh
Q 013356          252 LAFV  255 (444)
Q Consensus       252 ~~~~  255 (444)
                      ..++
T Consensus       444 ~~~~  447 (467)
T PRK09556        444 LMAI  447 (467)
T ss_pred             HHHH
Confidence            4443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.43  E-value=1.5e-12  Score=122.34  Aligned_cols=146  Identities=10%  Similarity=0.080  Sum_probs=122.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      |.+.++.|.++.+.+++.+.+.++..+++++.|++.||+|+|+++..+.++..++.+...  + ...+....++.|++..
T Consensus       224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~  300 (381)
T PRK03633        224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGF  300 (381)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHH
Confidence            556667789998999999999999999999999999999999999888888777665443  2 2344557788888877


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ...|...+++.|..|+++++...+......++|.++||.++|++.++++|++.|.+.+.+.++..+..+
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            788999999999999888888888888899999999999999999999999999998877765544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.40  E-value=6.5e-13  Score=125.35  Aligned_cols=139  Identities=8%  Similarity=-0.008  Sum_probs=113.1

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH--Hhhhc--hhhHHHHHHHHHHhHhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT--AGCGS--SFDFWSIAICRMLVGVG  183 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~s~~~l~~~r~l~G~~  183 (444)
                      +++++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..+..  +...+  .++.+.+++..++.|++
T Consensus       246 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  325 (394)
T TIGR00883       246 LTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALI  325 (394)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            447788999999999999999999999999999999999998776554444333  12222  25677777888999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHH-hhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHH
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILM  246 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~  246 (444)
                      .+...+...+++.|.+|+++|+++.++. .....+|..++|.+++.+.++.| |++.++...+..
T Consensus       326 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       326 GGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            9889999999999999999999999874 56667889999999999999888 888877665443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.40  E-value=3.2e-11  Score=113.40  Aligned_cols=261  Identities=11%  Similarity=0.129  Sum_probs=175.4

Q ss_pred             HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh--hhhhhccHHHhhhcCCCCc
Q 013356          126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE--ASFISLAAPFIDDNAPVPQ  203 (444)
Q Consensus       126 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~--g~~~~~~~~~i~~~~~~~~  203 (444)
                      ..+...+.++..|.++||+|||..+....+...+..+...+.. +|.++    +.|+..  +.......++++|....++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~  145 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE  145 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence            3677789999999999999999999999998888888777766 44333    444432  3466778899999999999


Q ss_pred             hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccc
Q 013356          204 KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSE  283 (444)
Q Consensus       204 r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  283 (444)
                      |...+++....+..+..++|.+++.+....|.-..|.+..+..++..+..++++||+..+...++.....    ....  
T Consensus       146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~----~~~~--  219 (463)
T KOG2816|consen  146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE----LTPG--  219 (463)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc----cCCC--
Confidence            9999999999999999999999999999999999999999999988888888889876543332100000    0000  


Q ss_pred             cCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHH-HHhhcccccccccc
Q 013356          284 ASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGA-YSYWGPKAGYNIYH  362 (444)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  362 (444)
                                ...                .....+..+.....-.+|..+.+++..+........ ..-..+.|+...++
T Consensus       220 ----------~~~----------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~  273 (463)
T KOG2816|consen  220 ----------SLD----------------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFG  273 (463)
T ss_pred             ----------ccc----------------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecC
Confidence                      000                000111111222222445555555544444433332 22255788888899


Q ss_pred             CCcchh-hhhhhhcccchhhhhhhh-hhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 013356          363 MSNADM-MFGGVTIVCGIVGTISGG-FILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLA  428 (444)
Q Consensus       363 ~~~~~~-~~~~~~~~~~~~~~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (444)
                      ++.... .+.+.....+.++.++.. .+...++.+     ..+..+...-....+...+....|..+.
T Consensus       274 w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~-----~~i~lGl~~~~~~~~~~af~~~~w~~~~  336 (463)
T KOG2816|consen  274 WNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEK-----RLISLGLLSEFLQLLLFAFATETWMMFA  336 (463)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHhhHHHHHHHHHHHHHHHhccchhhhH
Confidence            987776 455666667777777666 566667776     4455555555555556666655555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.39  E-value=5.4e-12  Score=121.23  Aligned_cols=149  Identities=20%  Similarity=0.223  Sum_probs=135.9

Q ss_pred             cccc-cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+. +++|.++...|++.+.+.+|..+|+++.+++.+|+++++++..+.++++++.+..+++++.+..++.-++.|++.
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~  321 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAW  321 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            6565 568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ....+...+.+.+..|++.||+.++++.+....+..+|..+.|.+.+++|-+..+.+.++..++..++.+
T Consensus       322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887766555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.38  E-value=9.6e-13  Score=124.77  Aligned_cols=137  Identities=13%  Similarity=0.114  Sum_probs=115.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+.+.++.++..+.. .+....++.+.+.+..++.|+..
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLV  342 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999999999999999999888877653333 23344566777777778888877


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGE  242 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~  242 (444)
                      +...+..+.++.|.+|+++|++++|+.+....+|..++|+++|.+.++.| |+..+...
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~  401 (405)
T TIGR00891       343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL  401 (405)
T ss_pred             ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence            77788889999999999999999999999999999999999999999888 87766653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.37  E-value=4.5e-12  Score=119.07  Aligned_cols=142  Identities=15%  Similarity=0.089  Sum_probs=122.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      |.+.+|.|.++.+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.++.++.+.+++..++.|++.+
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  308 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            33446789999999999999999999999999999999999999999999999988888889999999999999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHH
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPF  249 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~  249 (444)
                      ...+....++.+. +++++++..++.. ...++|..+||.++|.+.+++|+ ..|+..+++.++.
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            9889999998887 5577788888886 55677889999999999999887 4666666555443

>TIGR00897 2A0118 polyol permease family

Probab=99.36  E-value=1.1e-11  Score=117.25  Aligned_cols=149  Identities=15%  Similarity=0.085  Sum_probs=118.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhH-HHHHHHHHHHHhhh-----chhhHHHHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-VGLSVWTFATAGCG-----SSFDFWSIAICRML  179 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~-----~~~s~~~l~~~r~l  179 (444)
                      |.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+...     ..++++.+++..++
T Consensus       246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  325 (402)
T TIGR00897       246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIA  325 (402)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHH
Confidence            6666789999999999999999999999999999999999988764 33333333333322     23467777788889


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      .|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+++.+.+..||+..|++.+++.++..++..|.
T Consensus       326 ~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       326 LGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            9998887654 4556677655 7899999999999999999999999999999999999999988877776666553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.35  E-value=5.6e-12  Score=122.38  Aligned_cols=156  Identities=9%  Similarity=-0.024  Sum_probs=119.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--h-HH-HHHHHHHHhH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--D-FW-SIAICRMLVG  181 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s-~~-~l~~~r~l~G  181 (444)
                      |.+.++.|.+.....+......++..++.++.|+++||+|||++++.+.++.+++.++.+...  + .+ ....+.++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            667778888877777777788888999999999999999999999999999888887765432  1 11 2223334444


Q ss_pred             hhhhh-hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH------hhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          182 VGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       182 ~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~------l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ++.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+.      +.+.++|++.|++.++++++..++.+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            44443 336678999999999999999999999999998888665543      34578899999998888777777777


Q ss_pred             hhccCcc
Q 013356          255 VIKPLQL  261 (444)
Q Consensus       255 ~~~p~~~  261 (444)
                      ++.||+.
T Consensus       455 ~~~~e~~  461 (479)
T PRK10077        455 KFVPETK  461 (479)
T ss_pred             hccccCC
Confidence            6667643

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=1e-11  Score=118.59  Aligned_cols=150  Identities=12%  Similarity=-0.040  Sum_probs=107.8

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchh-HH---HHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GV---GLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~---~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  181 (444)
                      +.+++|.+..+.++..+.+.++..++.++.|+++||+  ++|+.. ..   +.++..++..... ..+.....+..+..|
T Consensus       270 l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g  348 (434)
T PRK11663        270 MSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIG  348 (434)
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHH
Confidence            4467899999999999999999999999999999999  333332 22   2222222222222 233333334444455


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      ++...........+.|.+|+++|+.+.|+.+....+|..++|.+.+++.++.||+..|++.+++.++..+..++..+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        349 FFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             HHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43322222334567899999999999999999999999999999999999999999999998888777766655543

>PRK09952 shikimate transporter; Provisional

Probab=99.32  E-value=1.6e-11  Score=117.35  Aligned_cols=152  Identities=13%  Similarity=0.031  Sum_probs=112.9

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHhHh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGV  182 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~  182 (444)
                      .+++++|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+....    .++.+.+++..++.|+
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            455678888776666666667777888999999999999999988887766555433322    2234455556677788


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhh-hcccccchhhhHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      +.+...+...+++.|.+|.+.|+...++.+. +..+|..++|.+.+++.+..  +|+..+...++..++..+..+. .+|
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~  434 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-ccc
Confidence            8888888889999999999999988888554 44578899999999987643  5888888777776666555543 344

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=2.5e-11  Score=110.05  Aligned_cols=150  Identities=17%  Similarity=0.095  Sum_probs=127.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~  184 (444)
                      |.+++..|.|.+.++++.-.|.++..+|+.+.|+++|| +.|+.+.....+..+..+...+. ++.+..++.-++.|+..
T Consensus       236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~  314 (394)
T COG2814         236 PFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF  314 (394)
T ss_pred             HHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            88889999999999999999999999999999999999 99999888877777777666554 55666677777788877


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      +.........+++. -++.++.+.++....+++|..+|..+||.+.+++|+....++.+++.++..++.++..
T Consensus       315 ~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         315 SPALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             hhhhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            76666666666773 3589999999999999999999999999999999999999999998887777665543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.30  E-value=3.8e-11  Score=116.12  Aligned_cols=151  Identities=9%  Similarity=0.042  Sum_probs=119.9

Q ss_pred             cccccccccCccchhHHHH-HHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hch-hhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSS-AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s-~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~s~~~l~~~r~l~  180 (444)
                      |.+.+++|.+..+.+++.. ...++..++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+.-+++
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            5556778999999999974 6668999999999999999999998777666555444322   232 4555555566666


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      .++.|...+...++..+..+++.++...++.+...++|..+++.++|.+.+..||+..|.+.++++++..+...+.
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666788899999999999999999999999999999999999999999999999988888776666554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.29  E-value=3.4e-11  Score=115.67  Aligned_cols=149  Identities=9%  Similarity=-0.063  Sum_probs=106.0

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchh-HHHHHHHHHHHHhhhc--hhhHHHHHHHHHHhHh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLI-GVGLSVWTFATAGCGS--SFDFWSIAICRMLVGV  182 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~  182 (444)
                      ++++.|.+..+.++....+.++..++.++.|+++||+  |||+.. .....+..++.++..+  .++.+.+++..++.|.
T Consensus       280 l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~  359 (452)
T PRK11273        280 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGF  359 (452)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence            4556788888899999999999999999999999999  555432 2222333333332222  3344555555555555


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc-hhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA-LGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      +..........+..|.+|+++||++.|+.+....+|.. ++|.+++.+.++.||+..|++.++.+++..+....+
T Consensus       360 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        360 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            43333333345678999999999999999988878765 479999999999999999998888777766655544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.28  E-value=1.2e-11  Score=110.85  Aligned_cols=177  Identities=15%  Similarity=0.055  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc
Q 013356           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH  144 (444)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~  144 (444)
                      +.+..+++++++.++-|..+..-..                -.+.|..|.|..+.++..+.|-++...|.+++|+++||+
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p----------------~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl  315 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGP----------------LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL  315 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3567778888888887776654321                346677899999999999999999999999999999996


Q ss_pred             --CCcchhHHH-HHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-c
Q 013356          145 --NPFRLIGVG-LSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-G  218 (444)
Q Consensus       145 --Grr~~l~~~-~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G  218 (444)
                        |||..+.+. ++...++.+..-.++  |++...++-++.|+..-+-.-.......|..|++--|.+.|+...+..+ |
T Consensus       316 fkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~G  395 (448)
T COG2271         316 FKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIG  395 (448)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhh
Confidence              777765544 444444444444444  5688888889999887777777788889999999999999999999998 8


Q ss_pred             cchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       219 ~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      .+.+....+++.|.+||...|.+..+.+++..++.....
T Consensus       396 a~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         396 AALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             HHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            888888888898989999999988777766665554443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.25  E-value=5.8e-11  Score=112.22  Aligned_cols=143  Identities=8%  Similarity=0.046  Sum_probs=123.8

Q ss_pred             ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (444)
Q Consensus       113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  192 (444)
                      +.+....|.+.++..+...++.+..|++.||+|||+.+.++.++.++..++...++|.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556788899999999999999999999999999999999999998888878889999999999999999877767777


Q ss_pred             HHhhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          193 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      .++.+..+++.++...+. .+....+|..+++.++|++.+..||+..|.+.+++.++..++..+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888776665 677889999999999999999999999999999888777665544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.25  E-value=5e-11  Score=113.89  Aligned_cols=133  Identities=11%  Similarity=0.064  Sum_probs=102.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~  183 (444)
                      |.+.++.|.++.+.+.+.+.+.++..++.++.|++.||+|||+.+..+.++..++.+.....+  +...+.+..+..+.+
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (426)
T PRK12307        255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT  334 (426)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence            555566788888999999999999999999999999999999999888877766655444332  222222222222222


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHH
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA  238 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~  238 (444)
                      ..+..+..+.++.|.+|+++||+++|+......+|..++|.+++++.++.|+...
T Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            2233455678889999999999999999999999999999999999998886654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.24  E-value=8.9e-11  Score=111.70  Aligned_cols=149  Identities=15%  Similarity=0.192  Sum_probs=130.8

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc--chhHHHHHHHHHHHHhhhc--------hhhHHHHHHH
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS--------SFDFWSIAIC  176 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~s~~~l~~~  176 (444)
                      .-.+++|++..+...+.-+..+...+|++++|++.||+|.|  ++++++.+++.+..+...+        .++.+.+.+.
T Consensus       307 ~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~  386 (477)
T PF11700_consen  307 YATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL  386 (477)
T ss_pred             HHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence            34568999999999999999999999999999999999999  8988888888666666555        6788899999


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      -++.|+..|..++...++.+|..|+++.+..+|++....-....+||++.+.+.+..| -|+.+....++.++..++.++
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999988765 888888777776665555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.24  E-value=7.3e-11  Score=112.82  Aligned_cols=131  Identities=9%  Similarity=-0.014  Sum_probs=98.0

Q ss_pred             ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHH-hh---hchhhHHHHHHHHHHh
Q 013356          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATA-GC---GSSFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~---~~~~s~~~l~~~r~l~  180 (444)
                      |.+ ++.+|.+..+.++....+.++..++.+++|+++||+|||+.+..+.++..+... ..   ...+++..+.+..++.
T Consensus       262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (434)
T PRK15075        262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWL  341 (434)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            444 445799988889998899999999999999999999999988876554433221 11   1234454455556666


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhh-hcccccchhhhHHHHhhcccchh
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLNWR  236 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~~~wr  236 (444)
                      |++.+...+....++.|.+|++.|+...++.+. +..++..++|.+.+++.++.|++
T Consensus       342 ~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        342 SFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            777777667777889999999999999998644 34445778999999999888864

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.24  E-value=3.2e-11  Score=112.57  Aligned_cols=129  Identities=16%  Similarity=0.217  Sum_probs=117.1

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh-HHHHHHHHHHhHhh
Q 013356          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-FWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s-~~~l~~~r~l~G~~  183 (444)
                      |.+.++ +|.++.+.+++.+...++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..++.|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  314 (365)
T TIGR00900       235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVG  314 (365)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence            556554 8999999999999999999999999999999999999999888888888888877774 88888999999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  234 (444)
                      .+...+...+++.|.+|+++|++..++.+....+|..+++.+++.+.+++|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       315 YGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999987643

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.23  E-value=2.1e-11  Score=114.45  Aligned_cols=134  Identities=13%  Similarity=-0.005  Sum_probs=101.7

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-CcchhHH-HH-HHHHHHHHhhhc--hhhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGV-GL-SVWTFATAGCGS--SFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~-~~-~~~~~~~~~~~~--~~s~~~l~~~r~l~  180 (444)
                      +.+.+++|.++.+.++..+.+.++..++.++.|++.||++ ||+.... .. ....++......  ..+...+++..++.
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL  320 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            3355678999999999999999999999999999999864 3332222 11 112222222222  34555666777778


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHH
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAF  239 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f  239 (444)
                      |+......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+++||++.|
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            87666666667788999999999999999999999999999999999999999998764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.23  E-value=8.9e-11  Score=110.70  Aligned_cols=146  Identities=11%  Similarity=-0.081  Sum_probs=113.7

Q ss_pred             cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc------hhhHHHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------SFDFWSIAICRM  178 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~s~~~l~~~r~  178 (444)
                      +.+.+|.|.+++++|++.....+ ...++.++.|++.||+|+|+.+..+.++.++..+....      .++...++...+
T Consensus       232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (390)
T TIGR02718       232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA  311 (390)
T ss_pred             hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence            34446689999999999888764 66778899999999999999988877665333332221      233444455566


Q ss_pred             HhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356          179 LVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       179 l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~  251 (444)
                      +.+++.+...+...+...+..++ +++++.+++.+...++|..++|.++|.+.++.||+..|++.+++.++..+
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            67777777777788887777776 88999999999999999999999999999999999999988776655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.22  E-value=1.4e-10  Score=113.37  Aligned_cols=138  Identities=12%  Similarity=-0.101  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH--HHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356          121 VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF--WSIAICRMLVGVGEASFISLAAPFIDDN  198 (444)
Q Consensus       121 ~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~~~g~~~~~~~~~i~~~  198 (444)
                      +......+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445567778899999999999999999999999998888887776644  4555666777777777888889999999


Q ss_pred             CCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      +|++.|+.++|+.+....+|.+++|.+.+ +. ..++..++++.++..++..++.+ ++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            99999999999999999999999999988 43 45677888888877777666554 457644

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.22  E-value=1.1e-10  Score=112.64  Aligned_cols=148  Identities=10%  Similarity=-0.031  Sum_probs=104.2

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc-------hhHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR-------LIGVGLSVWTFATAGCGSSFDFWSIAICRML  179 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-------~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l  179 (444)
                      .+.+++|.+..+.+.+.+++.++..++.+++|+++||+|||+       ...+..++.++..++....++.+..++.-++
T Consensus       278 ~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l  357 (476)
T PLN00028        278 YFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL  357 (476)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            346678999999999999999999999999999999998752       3333344444444455556666666666667


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      .+++.+.......+++.+..| ++||...|+...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        358 FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            777665555556666677655 78999999987766666666555433 2234569999999988877766655444

>PRK10054 putative transporter; Provisional

Probab=99.22  E-value=7.7e-11  Score=111.06  Aligned_cols=144  Identities=17%  Similarity=0.081  Sum_probs=119.6

Q ss_pred             cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHHHHHHHhHhhhhhhh
Q 013356          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFI  188 (444)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~  188 (444)
                      ++.+.+....+++.+.+.+.....+++.|++.||+++|+.+..++++..++.+...+. ++.+.+++..++.|+|.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778888888888888888999999999999999999998888888777664 577778888999999998888


Q ss_pred             hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      +....++.+..|++.|+.+.+..+ ...+|..+||.++|.+.+++|....|++.+....+..++.+
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            888999999999999999988765 45589999999999999999988888887655544444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.21  E-value=1.5e-10  Score=112.79  Aligned_cols=155  Identities=10%  Similarity=-0.066  Sum_probs=105.8

Q ss_pred             cccccccccCccchhH------------HHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh----
Q 013356          106 SGIQGDFKLNNFQDGV------------LSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD----  169 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~------------~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s----  169 (444)
                      |.+.++.|.+....+.            ...+..++..++.++.++++||+|||++++++.++.+++.++.++..+    
T Consensus       312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~  391 (502)
T TIGR00887       312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST  391 (502)
T ss_pred             HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            6666677776543211            233445566778899999999999999999888887777666554321    


Q ss_pred             HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc----------cchhHHH
Q 013356          170 FWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH----------LNWRYAF  239 (444)
Q Consensus       170 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~----------~~wr~~f  239 (444)
                      ...+...-+...++..+..+....+.+|.+|.+.|+++.++.+....+|.++++.+.+.+.+.          .++...|
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  471 (502)
T TIGR00887       392 HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL  471 (502)
T ss_pred             hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHH
Confidence            111111111112222224456677889999999999999999999999999999999888763          3456677


Q ss_pred             HHHHHHHHHHHHHHHhhccCcc
Q 013356          240 WGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      ++.++..++..+. .+++||+.
T Consensus       472 ~i~~~~~~~~~i~-~~~lpEt~  492 (502)
T TIGR00887       472 EIFALFMFLGILF-TLLIPETK  492 (502)
T ss_pred             HHHHHHHHHHHHH-heEeccCC
Confidence            8887777666554 35668754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.21  E-value=1.3e-10  Score=111.20  Aligned_cols=153  Identities=10%  Similarity=-0.058  Sum_probs=107.5

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHH---HHHHhhhc--hhhHHHHHHHHHHhHh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGCGS--SFDFWSIAICRMLVGV  182 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~--~~s~~~l~~~r~l~G~  182 (444)
                      +++..|.++.+.++..+.+.++..++.++.|+++||+|+++....+..+..   ++.+....  ..+.+...+.-++.|+
T Consensus       278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  357 (438)
T TIGR00712       278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGF  357 (438)
T ss_pred             HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            445578899999999999999999999999999999975443333332221   11111111  2233433444455555


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccc-cchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG-VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      +.............|.+|+++|+.+.|+.+....+| .+++|.+.|.+.++.||...|++..+..++..+..++++||.
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       358 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            432222222346789999999999999998877776 578999999999999999999988888777777777777763

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.19  E-value=4e-10  Score=106.89  Aligned_cols=149  Identities=11%  Similarity=-0.044  Sum_probs=118.6

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHhHh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV  182 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~  182 (444)
                      +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.     ++++.+++.-++.|+
T Consensus       242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            456789999899998888888999999999999999999999999888877777766543     356677888899999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      +.+...+......... ++++||+..+..+....+|..+|+.+++.+.+..+|....+...+..++..++..++.
T Consensus       322 g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK15402        322 GIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFL  395 (406)
T ss_pred             HHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988777666655444 4489999999999999999999999999998888877666665555555544444443

>TIGR00895 2A0115 benzoate transport

Probab=99.19  E-value=3.9e-11  Score=113.46  Aligned_cols=124  Identities=15%  Similarity=0.029  Sum_probs=105.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      |.+.+++|.++.+.++..+...++..++.++.|++.||+|||+.+....+......++....++.+.+++..++.|++.+
T Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            66778889999999999999999999999999999999999955444444333333333335677778888999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  229 (444)
                      ...+...+++.|.+|+++|+++.|+......+|..++|.++|++
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999998875

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.19  E-value=3.3e-10  Score=95.75  Aligned_cols=174  Identities=18%  Similarity=0.129  Sum_probs=126.3

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d  142 (444)
                      +..++.++|+++....+....++.                   ..++++||+|+...+.+.+.-..-.++.+++.|.++|
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~-------------------~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D  325 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGP-------------------MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD  325 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhH-------------------HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh
Confidence            334566667777666665554543                   3478999999999999999888888999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccch
Q 013356          143 SHNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL  221 (444)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~  221 (444)
                      |+|++...+.+.++..+.. ....|  +++.=+++..+.|+..+.........++...|+++.|.+.|..+...++|.++
T Consensus       326 k~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~  403 (459)
T KOG4686|consen  326 KYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF  403 (459)
T ss_pred             hhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH
Confidence            9999998877665554433 23332  23333566778888877766667788888899999999999999999999999


Q ss_pred             hhhHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHhhc
Q 013356          222 GYVYGGVVGSHLN---WRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       222 ~~~l~~~l~~~~~---wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      .|++++.+.++-|   |--.|.+......+..+..++.+
T Consensus       404 i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  404 IPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999999987643   54444444333333333334443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.18  E-value=3.5e-10  Score=108.47  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=104.9

Q ss_pred             CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHHHHHHHhHhhhhhhhhccHH
Q 013356          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIAICRMLVGVGEASFISLAAP  193 (444)
Q Consensus       115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~~~~~~  193 (444)
                      ++.+.+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888899999999999999999999999999998888887776665 46677788889999999999999999


Q ss_pred             HhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      +++|..+       ++++|.+.++.+....+|..+++.+.+.+.+..||
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9998865       45689999999999999999999999998876666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10504 putative transporter; Provisional

Probab=99.18  E-value=2.5e-10  Score=110.49  Aligned_cols=130  Identities=10%  Similarity=0.107  Sum_probs=110.1

Q ss_pred             ccccc-ccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch---hhHHHHHHHHHHhH
Q 013356          106 SGIQG-DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS---FDFWSIAICRMLVG  181 (444)
Q Consensus       106 ~~i~~-~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~s~~~l~~~r~l~G  181 (444)
                      |.+.+ .+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++..++.++..+.   ++.+.+.+..++.|
T Consensus       285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (471)
T PRK10504        285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG  364 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            44444 578899999999999999999999999999999999999999988888777666553   34445556678889


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      ++.+...+....++.+..|+++|+.+.++.+....+|..+|+.+++.+.+..++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            998988889999999999999999999999999999999999999988766554

>TIGR01272 gluP glucose/galactose transporter

Probab=99.18  E-value=2.4e-10  Score=103.48  Aligned_cols=130  Identities=11%  Similarity=0.058  Sum_probs=107.7

Q ss_pred             ccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhc
Q 013356          111 DFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL  190 (444)
Q Consensus       111 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~  190 (444)
                      .+|.++.+.++..+.+..+..+|.+..+++.||+|+|+++.++..+..++.++....++...+ .+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999988888888877666655544333 3556889999999999


Q ss_pred             cHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHH
Q 013356          191 AAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  243 (444)
Q Consensus       191 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~  243 (444)
                      ..+...+..|+ +.+.+.++. ....+|.+++|++.|.+.|..|.+..|++..
T Consensus       251 ~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       251 IFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            99999998874 455666665 4566899999999999999999888887553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.17  E-value=3.7e-10  Score=96.90  Aligned_cols=144  Identities=11%  Similarity=0.053  Sum_probs=115.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-------hhHHHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------FDFWSIAICRM  178 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~s~~~l~~~r~  178 (444)
                      |.+++.+|+|.+|.+.+.+.-.+|..+ +++.|.+.|++|.+.++.+|.+...+|..+...+       .++|.+.+..+
T Consensus        26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~  104 (250)
T PF06813_consen   26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF  104 (250)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence            889999999999999999999999987 5889999999999999999999999998876542       47888888888


Q ss_pred             HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~  251 (444)
                      +.|.+.+...+.......+.+| ++||.+.|+.-...+++..+-..+...+.+.-.-+..+.......++..+
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~  176 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV  176 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            9999888777888888889998 68999999999999998877666665554433333443333333333333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.3e-10  Score=111.16  Aligned_cols=152  Identities=17%  Similarity=0.172  Sum_probs=137.7

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      +|.+.++.+.+..+.+.+.++..+...++.+..|+++|+..  ++.+..++.++.+++.+.+.++++++.++...++.|+
T Consensus       321 l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~  400 (509)
T KOG2504|consen  321 LPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGF  400 (509)
T ss_pred             HHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            37788899999999999999999999999999999999988  5556777888888888899999999999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhh
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      +.|.........+.|+.+.++-..+.|+.....+++.++||++++.+.|..+ |...|+.+++..++..+..++.
T Consensus       401 ~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  401 CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHh
Confidence            9999999989999999999999999999999999999999999999988877 9999999998877766555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.17  E-value=2.2e-10  Score=123.20  Aligned_cols=147  Identities=18%  Similarity=0.116  Sum_probs=125.2

Q ss_pred             cccccccccCcc-chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNF-QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~-~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +.+.+.+|.+.. +.+++.+...++.+++++++|+++||+++|+++.++.++.+++.++..+..+.+.++++.++.|++.
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA  336 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            445677899988 9999999999999999999999999999999999999999888888888889999999999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc-ccchhHHHHHHHHHHHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAILMLPFAVL  252 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~wr~~f~~~~~~~~~~~~~  252 (444)
                      ++..+...+++.+.+|++.||+++++.+....+|.++++.+++.+.. .+++...|++.+.+.++..+.
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  405 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY  405 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888888776653 245666676666554444333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.17  E-value=4.7e-10  Score=106.20  Aligned_cols=146  Identities=13%  Similarity=0.192  Sum_probs=107.6

Q ss_pred             cccccccccCccchhHHHHHHH-HHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hch-hhHHHHHHHH---
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GSS-FDFWSIAICR---  177 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~s~~~l~~~r---  177 (444)
                      +.+.+++|+++.+.+++.+... ++..++.+++|++.||+|+|+.+..+.++..+..+..   ++. ++.+.+++.-   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4466778999999999986654 5688999999999999999998887777666554433   343 4556555554   


Q ss_pred             -HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          178 -MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       178 -~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                       +..|++.+...+....++.+.+|.+++    ++.+...++|..+++.++|.+.++.||+..|.+.++++++..++.+.
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence             455666666777777888888776554    44555556677766778999999999999999998887776555543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.17  E-value=5e-10  Score=105.51  Aligned_cols=144  Identities=13%  Similarity=-0.050  Sum_probs=117.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHH-HHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.+++|+++.+.+++.+.+.++..++.++.+++.||.+ |+.+..+..+ .....++....++.+.+.+..++.|++.
T Consensus       241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~  319 (394)
T PRK10213        241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTF  319 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5567788999999999999999999999999999999964 4444444444 3343444456677888888999999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~  251 (444)
                      +...+...+++.+..| +++++..++......+|..+|+.++|.+.+..|++..+...+++.++..+
T Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence            9999999999999887 66778888888888999999999999999999999999888766554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.16  E-value=2.8e-10  Score=107.48  Aligned_cols=148  Identities=12%  Similarity=0.018  Sum_probs=118.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh-hcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-SHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.++.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+++..++.|++.
T Consensus       232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~  311 (400)
T PRK11646        232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGS  311 (400)
T ss_pred             hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            5555665557788899988888877766666677765 467677778888888888888888888888888888999998


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc---c-hhHHHHHHHHHHHHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL---N-WRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~---~-wr~~f~~~~~~~~~~~~~~  253 (444)
                      +...+...+++.|..|+++||+.+++.+....+|..+||.++|++.++.   + -...|++.++++++..+..
T Consensus       312 ~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        312 IIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999999999998763   3 3566666565555554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.16  E-value=4.8e-10  Score=105.36  Aligned_cols=151  Identities=12%  Similarity=0.025  Sum_probs=113.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh-chhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.+.+|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+..++..++.+++.
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  303 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL  303 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            556667899999999999999999999999999999999999999998888887776554 3556666666777777765


Q ss_pred             hhhhhccHH-HhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          185 ASFISLAAP-FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       185 g~~~~~~~~-~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      ....+.... ...+..+++.++...  .+....+|..+||.++|.+.+. .+|++.+.+.++++++.......+.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        304 FALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             HhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            544444343 344444445555443  4567789999999999999885 68999999988776666555544433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.15  E-value=2.8e-10  Score=104.38  Aligned_cols=149  Identities=13%  Similarity=0.143  Sum_probs=131.5

Q ss_pred             ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (444)
Q Consensus       113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  192 (444)
                      +.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=.++++++++.+.+.+.+.+.|+-.+.......
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcc
Q 013356          193 PFIDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQL  261 (444)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~  261 (444)
                      .|+++.+|++..++...+ .+.+.++|..+.+.++|.+.|+.|.+..|++.+.+.++..++..+.++++.
T Consensus       335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            999999998887777777 478889999999999999999999999999999998888888888876533

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.15  E-value=3.9e-10  Score=107.74  Aligned_cols=147  Identities=7%  Similarity=-0.005  Sum_probs=96.4

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh----chhhHHHHHHHHHHhHhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVG  183 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~----~~~s~~~l~~~r~l~G~~  183 (444)
                      +.+++|.+..+.++..++..++..+++++.|+++||+|||+.+.++.++.++..+...    ..++....+..-.+.+++
T Consensus       270 l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (432)
T PRK10406        270 LVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLI  349 (432)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            4567888888889989988888899999999999999999988776665433332111    122333222222223333


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHh
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      .+...+....++.|++|++.|+.+.|+.+....+ +....|.+.+.+. ..| |...++..++..++..+..++
T Consensus       350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            3334455678899999999999999998866543 2334777777654 344 555666555555555544444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.14  E-value=3.9e-10  Score=105.27  Aligned_cols=154  Identities=17%  Similarity=0.141  Sum_probs=125.0

Q ss_pred             cccccccc-cCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-hhHHHHH----HHHHH
Q 013356          106 SGIQGDFK-LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-FDFWSIA----ICRML  179 (444)
Q Consensus       106 ~~i~~~~~-~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~s~~~l~----~~r~l  179 (444)
                      +..-+|.| .+....+.+.++..++-.+.-...+++..|+|.|+++.++.+.+++=..+.+.. ++.+...    +...+
T Consensus       231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~l  310 (400)
T PF03825_consen  231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLL  310 (400)
T ss_pred             HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhh
Confidence            34556666 667777888888888888999999999999999999999999999988888877 5544433    34567


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhh-hcccccchhhhHHHHhhcccc------hhHHHHHHHHHHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYM-CIPTGVALGYVYGGVVGSHLN------WRYAFWGEAILMLPFAVL  252 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~~~------wr~~f~~~~~~~~~~~~~  252 (444)
                      +|+..+..+.....++.+.+|++.|+++.+++.. ..++|..+|..++|++.+++|      |...+.+.+++.++..++
T Consensus       311 hG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  311 HGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999876 468999999999999998765      455666677666666665


Q ss_pred             HHhhccC
Q 013356          253 AFVIKPL  259 (444)
Q Consensus       253 ~~~~~p~  259 (444)
                      .+++.+|
T Consensus       391 f~~~fk~  397 (400)
T PF03825_consen  391 FVILFKP  397 (400)
T ss_pred             HHhhccC
Confidence            5555544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.3e-09  Score=102.20  Aligned_cols=156  Identities=11%  Similarity=-0.063  Sum_probs=123.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh---hHH------HHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFW------SIAIC  176 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---s~~------~l~~~  176 (444)
                      ..+-++-|++..+.-+......+...+..+.+..+.||+|||+.+++++.+..+..+++...-   +..      ..+++
T Consensus       294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            557777899999999999999999999999999999999999999999999988888776532   111      11233


Q ss_pred             HHHhHhhhhh-hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          177 RMLVGVGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       177 r~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      .++..++.+. ..|+..-+.+|.+|++.|..+.++.....-+...+-...-..+.+..|= +.|....++++...+..++
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence            3333333332 4578888999999999999999999988888777766666666666664 7888888899999999999


Q ss_pred             hccCccc
Q 013356          256 IKPLQLK  262 (444)
Q Consensus       256 ~~p~~~~  262 (444)
                      .+||+..
T Consensus       453 ~lPETkg  459 (485)
T KOG0569|consen  453 YLPETKG  459 (485)
T ss_pred             hCcccCC
Confidence            9999653

>TIGR00896 CynX cyanate transporter

Probab=99.10  E-value=3.9e-10  Score=104.92  Aligned_cols=128  Identities=16%  Similarity=0.102  Sum_probs=103.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+.++.|.+..+.+.+.+.+.++..+++++.|++.||+ +||+.+.++.++.+++.++..+.++..... .-++.|++.
T Consensus       221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~  299 (355)
T TIGR00896       221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQ  299 (355)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhh
Confidence            556667899999999999999999999999999999999 566677788888888777777665433332 457889999


Q ss_pred             hhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356          185 ASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  234 (444)
                      +...+.....+.+..+ +++++...++.+....+|..++|.++|++.++.|
T Consensus       300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9888887777765554 5667888999888888899999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.09  E-value=6.5e-10  Score=100.00  Aligned_cols=142  Identities=14%  Similarity=0.097  Sum_probs=125.5

Q ss_pred             ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhh
Q 013356          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (444)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~  188 (444)
                      ..++|++..++.++.-...+..++|++++|+|.||+|.|+++.++.++..+.++...+...-..+.++-.+.|...|..+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            44999999999999999999999999999999999999999999999999999988888777777888899999999999


Q ss_pred             hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHH
Q 013356          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFA  250 (444)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~  250 (444)
                      +.+.++..+.+|+++-++.+|+++...-.+..+||.+.+.+.+.. +-|..+....++..+..
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl  422 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL  422 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence            999999999999999999999999999999999999999887654 35666665555433333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.08  E-value=6.8e-10  Score=119.18  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=120.4

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-------------------
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-------------------  167 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------------------  167 (444)
                      .+.+.+|.++.+.|++.+.+.+|.++++++.|+++|++++++.+..+.++.+++.+...+.                   
T Consensus       251 ~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  330 (1140)
T PRK06814        251 LAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLS  330 (1140)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhc
Confidence            3455689999999999999999999999999999999888777777766666655544443                   


Q ss_pred             -hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc-ccchhHHHHHHHHH
Q 013356          168 -FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-HLNWRYAFWGEAIL  245 (444)
Q Consensus       168 -~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~wr~~f~~~~~~  245 (444)
                       ++.+.++++.++.|++.+...+...+++.+.+|++.||+++|+.+....+|..+++++++.+.+ ..++...+++.+++
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence             6778888899999999999999999999999999999999999999999999999999988863 45677777766655


Q ss_pred             HHHHHHH
Q 013356          246 MLPFAVL  252 (444)
Q Consensus       246 ~~~~~~~  252 (444)
                      .++..+.
T Consensus       411 ~~~~~~~  417 (1140)
T PRK06814        411 NLIVAIL  417 (1140)
T ss_pred             HHHHHHH
Confidence            4444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.06  E-value=8.4e-10  Score=104.67  Aligned_cols=140  Identities=11%  Similarity=0.064  Sum_probs=98.4

Q ss_pred             ccccccc--ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcch-hHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          106 SGIQGDF--KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRL-IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       106 ~~i~~~~--~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      |.+.+++  +.+..+.++..+...++..++.+++|+++||+|||+. .....++.+++.++....++....+++-.+.++
T Consensus       266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (412)
T TIGR02332       266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM  345 (412)
T ss_pred             HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            5565654  5677888999999999999999999999999998775 334444444433332222232222222223333


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHH
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAIL  245 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~  245 (444)
                      |.....+.......|.+|+++|+.+.|+.+....+|.+++|.+.+.+.+..| |++.|++.++.
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            3332333344555788999999999999999999999999999999998774 99998877654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.05  E-value=8.9e-10  Score=104.37  Aligned_cols=153  Identities=16%  Similarity=0.079  Sum_probs=123.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc---C--CcchhHHHHHHHHHHHHhhhch----hhHHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH---N--PFRLIGVGLSVWTFATAGCGSS----FDFWSIAIC  176 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~----~s~~~l~~~  176 (444)
                      |.+.+++|+++++.....+...+... .-+++|.++|.+   |  ||+-++++.++..++.+..+..    .+.....+.
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~   92 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVL   92 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHH
Confidence            77899999999999888887777654 457789999987   3  5556667777776655555543    356667777


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCC--CCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAP--VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      -++..+|.......+-+++.|...  ++.||...+.......+|.+++..++|.+.+..++|+.|.+.+++..+..+..+
T Consensus        93 l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~  172 (433)
T PF03092_consen   93 LFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL  172 (433)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence            788899999999999999999984  344788888999999999999999999999999999999999888887777777


Q ss_pred             hhccC
Q 013356          255 VIKPL  259 (444)
Q Consensus       255 ~~~p~  259 (444)
                      ++.+|
T Consensus       173 ~~~~e  177 (433)
T PF03092_consen  173 FLLEE  177 (433)
T ss_pred             Hhhhh
Confidence            76665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.05  E-value=2.9e-09  Score=95.82  Aligned_cols=147  Identities=16%  Similarity=0.048  Sum_probs=118.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh-------hHHH----HH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF-------DFWS----IA  174 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------s~~~----l~  174 (444)
                      ..++++|++++.+.|...+.+.+...+..+.+|+++||+|.++++.+.....+++..+..+..       +...    ++
T Consensus       243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  322 (417)
T COG2223         243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL  322 (417)
T ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence            346788999999999999999999999999999999999999999999888888888777653       3333    45


Q ss_pred             HHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHH
Q 013356          175 ICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       175 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~  253 (444)
                      ...+..|+|.|    ....++..++| ++-|.+.|+.....++|...-|..-+...+..| +...|++...+.++..+..
T Consensus       323 ~l~~~~G~GnG----svfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         323 ALFVFAGLGNG----SVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             HHHHHhccCcc----hheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            55566666666    44566666666 588999999999999999888888787777666 9999999988887777766


Q ss_pred             Hhhc
Q 013356          254 FVIK  257 (444)
Q Consensus       254 ~~~~  257 (444)
                      +...
T Consensus       398 ~~~y  401 (417)
T COG2223         398 WALY  401 (417)
T ss_pred             HHHH
Confidence            5554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.03  E-value=6.2e-09  Score=98.08  Aligned_cols=143  Identities=10%  Similarity=0.025  Sum_probs=113.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      +.+++.+|.++.+.|++.+.+.++..+++++.+++.||+++|+++..+.+ .++..++.++.++++...+.-++.|++.+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            34566789999999999999999999999999999999999998887754 44555555667788877888889999999


Q ss_pred             hhhhccHHHhhhcCCCCc-hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356          186 SFISLAAPFIDDNAPVPQ-KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~  250 (444)
                      ...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+ +.+|-|..+.+.++..+...
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            888888888888766554 79999999999999999999888865 45665555554433333333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.02  E-value=1.2e-09  Score=105.49  Aligned_cols=148  Identities=15%  Similarity=0.034  Sum_probs=102.5

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh--------HHHHHHH--HHHHHhhhc-hhhHHHHHHH
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI--------GVGLSVW--TFATAGCGS-SFDFWSIAIC  176 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~s~~~l~~~  176 (444)
                      +.+.+|.+..+.+++.++..++..++.++.|+++||+++|+..        ..+....  ++..+.... ..+....++.
T Consensus       288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (465)
T TIGR00894       288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIII  367 (465)
T ss_pred             HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            4567899999999999999999999999999999998755432        1111111  111111111 2344444444


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc---cchhHHHHHHHHHHHHHHHHH
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH---LNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~---~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      -.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.+.   .+|+..|.+.++..++..++.
T Consensus       368 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       368 LTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            555555555555555555667776 5899999999999999999999999988764   348999998887777766555


Q ss_pred             Hhh
Q 013356          254 FVI  256 (444)
Q Consensus       254 ~~~  256 (444)
                      .+.
T Consensus       447 ~~~  449 (465)
T TIGR00894       447 LIF  449 (465)
T ss_pred             eee
Confidence            443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.00  E-value=1.7e-09  Score=99.80  Aligned_cols=148  Identities=17%  Similarity=0.109  Sum_probs=134.8

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~  187 (444)
                      -.||.+..+...|........|-++.=++.+++.+|+|+-+++..++.+..+=.+...+.+|.|+.+-..+++|+..+..
T Consensus       397 Hled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~ali  476 (618)
T KOG3762|consen  397 HLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALI  476 (618)
T ss_pred             HHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHH
Confidence            45778878888898888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccHHHhhhcCCCCchhHHHHHHh-hhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          188 ISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      |.+..+|+++..||+-|..+-++.+ ...++|--+|.++||.+.+.++=|..|.+.++.+++..++...
T Consensus       477 Waa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  477 WAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999885 4568999999999999999999999999999888776655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=5.2e-09  Score=101.76  Aligned_cols=124  Identities=20%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHhHhh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS---SFDFWSIAICRMLVGVG  183 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~s~~~l~~~r~l~G~~  183 (444)
                      .+++.+|.|+.+.|+....+.++..+++++.|++.||+|+|+.+..+.++.+++.++...   .++.+...+..++.|+|
T Consensus       285 ~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g  364 (495)
T PRK14995        285 ELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFS  364 (495)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            456668999999999999999999999999999999999999999898888877765543   34666677788999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  230 (444)
                      .|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        365 AASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999989999999999999999999999999999999998887764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.99  E-value=2e-09  Score=104.73  Aligned_cols=125  Identities=16%  Similarity=0.209  Sum_probs=109.9

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHhHhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVG  183 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~~  183 (444)
                      +++.+|.++.+.++......++..++.++.|++.||+|||+.+.++.++.+++..+..+    ..+++.+....++.|++
T Consensus       282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g  361 (485)
T TIGR00711       282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG  361 (485)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence            45568999999999999999999999999999999999999999999888888877662    23567777788999999


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcc
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSH  232 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~  232 (444)
                      .+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888888889999999999999999999999999999888764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10133 L-fucose transporter; Provisional

Probab=98.99  E-value=6.4e-09  Score=99.23  Aligned_cols=139  Identities=11%  Similarity=-0.113  Sum_probs=113.0

Q ss_pred             ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhh
Q 013356          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFI  188 (444)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~  188 (444)
                      ++.+|.++.+.++....+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.. -+..-.+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999998888777776666665543 2456678999999999


Q ss_pred             hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 013356          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA  250 (444)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~  250 (444)
                      |...+...|..++ +.+.+.++..... +|..++|.+.|.+.+..| -|..|++..+..+...
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~  426 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVMTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhHHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            9999999999874 5667777776444 688888899999988887 7888887655444333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.97  E-value=9.1e-09  Score=96.87  Aligned_cols=132  Identities=14%  Similarity=0.204  Sum_probs=102.4

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHhHh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAICRMLVGV  182 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~~r~l~G~  182 (444)
                      +.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.++..+.     ++...+++..++.|+
T Consensus       233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            455789999999999999999999999999999999999999988888877777666543     234555667788999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccchhHHHHH
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWG  241 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~wr~~f~~  241 (444)
                      +.+...+....+..|..| ++|+++.++.+..... |.+.++.++ .+.+..+|...+..
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~  370 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHHHH
Confidence            999899999999999887 7899999988766654 555555544 55444455444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.96  E-value=3.2e-09  Score=100.22  Aligned_cols=134  Identities=9%  Similarity=-0.070  Sum_probs=95.8

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~  187 (444)
                      +.+++|.++.+.+.+.+...++..++.++.+++.||+|||+.+.++.++..++.++..+.++.+..+..-.+.+.|.+..
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999889999999999999999999999999999999999999998888888887766655455445544444433


Q ss_pred             hhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHH
Q 013356          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILM  246 (444)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~  246 (444)
                      .+.  ....+..|.++|+   +.......++..+++.+++++.++.|+.....+.+.+.
T Consensus       310 ~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        310 FGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             hHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            332  3334455544543   33334455677777888888887777766555555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.96  E-value=1.1e-08  Score=97.62  Aligned_cols=130  Identities=17%  Similarity=0.177  Sum_probs=111.5

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVG  183 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~  183 (444)
                      +.+.++.--++...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+  |.+.+++.-++.|++
T Consensus       249 ~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~  328 (428)
T PF13347_consen  249 PYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIG  328 (428)
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhh
Confidence            444444322346788888899999999999999999999999999999999999999988886  999999999999999


Q ss_pred             hhhhhhccHHHhhhcCCC-------CchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          184 EASFISLAAPFIDDNAPV-------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      .+..++...++++|..+.       ++.|...+.......+|..+++.+.+.+.+..|+
T Consensus       329 ~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  329 YGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999873       4468899999999999999999988887654433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.96  E-value=3.3e-09  Score=98.72  Aligned_cols=111  Identities=9%  Similarity=-0.035  Sum_probs=94.2

Q ss_pred             cccccccccCccchhHHHHHHH-HHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----------hhHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFM-VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----------FDFWSI  173 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~s~~~l  173 (444)
                      |.+.+++|.++.+.+.+.++.. ++..++.+++|++.||+|||+.+..+.++.+++..+..+.           ++.+.+
T Consensus       233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (356)
T TIGR00901       233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML  312 (356)
T ss_pred             HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence            4455568999999998888766 6778999999999999999999998888887776655543           456778


Q ss_pred             HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcc
Q 013356          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP  216 (444)
Q Consensus       174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  216 (444)
                      ..+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       313 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       313 FLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999999887654

>PRK09848 glucuronide transporter; Provisional

Probab=98.95  E-value=5.4e-09  Score=100.48  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=103.0

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEA  185 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g  185 (444)
                      +++.+|.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+.+  +++.+++..++.|+|.+
T Consensus       255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~  334 (448)
T PRK09848        255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG  334 (448)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            3445676655444444555677888999999999999999999999998888877776643  67777788889999999


Q ss_pred             hhhhccHHHhhhcCCCC-------chhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          186 SFISLAAPFIDDNAPVP-------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      ...+...++..|..+.+       ++|...++.+....+|..+|+.+.+.+.+..|+
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999988754       458999999999999999999998887655444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.92  E-value=6e-09  Score=94.74  Aligned_cols=143  Identities=22%  Similarity=0.350  Sum_probs=118.6

Q ss_pred             cccccccccCc--cchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh--HHHHHHHHHHhH
Q 013356          106 SGIQGDFKLNN--FQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD--FWSIAICRMLVG  181 (444)
Q Consensus       106 ~~i~~~~~~s~--~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s--~~~l~~~r~l~G  181 (444)
                      +.+..+++.+.  ...++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+  .+.+++.|+++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  105 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG  105 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            55666666555  47899999999999999999999999999998888888766666677777666  899999999999


Q ss_pred             hhhhhhhhccHHHhhhcCCC-CchhHHHHHHhh-hcccccchhhhHHHHhhcc--cchhHHHHHHHHHHHH
Q 013356          182 VGEASFISLAAPFIDDNAPV-PQKTAWLSMFYM-CIPTGVALGYVYGGVVGSH--LNWRYAFWGEAILMLP  248 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~l~~~l~~~--~~wr~~f~~~~~~~~~  248 (444)
                      ++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+...  .+||+.|.+.......
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999999999999997 688999998888 5888888888887776643  5799977766655443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.89  E-value=1.8e-08  Score=96.92  Aligned_cols=126  Identities=10%  Similarity=-0.018  Sum_probs=111.2

Q ss_pred             ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch----------hhHHHHHHHHH
Q 013356          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----------FDFWSIAICRM  178 (444)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----------~s~~~l~~~r~  178 (444)
                      .+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.++..-+
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            35689999999999999999999999999999999999999999999999888654311          34445566778


Q ss_pred             HhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356          179 LVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (444)
Q Consensus       179 l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  234 (444)
                      +.+++.+........++.+..|++.+|...++.....++|..+++.+++.+.++.|
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999987665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.89  E-value=9.1e-08  Score=94.46  Aligned_cols=151  Identities=17%  Similarity=0.113  Sum_probs=123.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhh--------HHHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFD--------FWSIAIC  176 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s--------~~~l~~~  176 (444)
                      ..+.+.+|.+.+....+...+....-+..+++|.++|+ +||++.+.++.++..++.++.+++..        ....+++
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g   91 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG   91 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence            34556688888888888888888889999999999997 69999999999999999988776421        2345677


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCCCC---chhHHHHHHhhhcccccchhhhHHHHhhcc-------cchhHHHHHHHHHH
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCIPTGVALGYVYGGVVGSH-------LNWRYAFWGEAILM  246 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~wr~~f~~~~~~~  246 (444)
                      -.+..+|.|++-+...+...|.++++   +|.....+++.+.++|..+++++..++.++       .+|...|.+.++..
T Consensus        92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m  171 (654)
T TIGR00926        92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM  171 (654)
T ss_pred             HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence            88889999999999999999999754   367788999999999999999988888643       36999999998887


Q ss_pred             HHHHHHHHhh
Q 013356          247 LPFAVLAFVI  256 (444)
Q Consensus       247 ~~~~~~~~~~  256 (444)
                      ++..++....
T Consensus       172 ~ia~lvf~~g  181 (654)
T TIGR00926       172 ILALIVFMAG  181 (654)
T ss_pred             HHHHHHHHHh
Confidence            7776655443

>PRK11043 putative transporter; Provisional

Probab=98.88  E-value=3.2e-08  Score=93.78  Aligned_cols=131  Identities=8%  Similarity=-0.064  Sum_probs=101.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---hc--hhhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---GS--SFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~--~~s~~~l~~~r~l~  180 (444)
                      |.+.+++|.++.+.++....+.++..++.+..+++.||+|+|+.+....+..+++.+..   ..  .++.+.+++...+.
T Consensus       227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (401)
T PRK11043        227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM  306 (401)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            55667789999999998888889999999999999999999987766555544443322   11  34566666677888


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhH
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRY  237 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~  237 (444)
                      |++.+..++.......|..| ++||++.++.+.....+...++.+.+.+.+...-..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            99989888888888888776 689999999998888788888888888876443333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.88  E-value=1.9e-08  Score=97.25  Aligned_cols=130  Identities=18%  Similarity=0.059  Sum_probs=102.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc-----hhhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS-----SFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~s~~~l~~~r~l~  180 (444)
                      +.+.+....++...+++.+...++..++.+++++++||+|+|+.+.++.++..++.+...+     .++.+.+++.-++.
T Consensus       255 ~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  334 (473)
T PRK10429        255 IYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILL  334 (473)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            3444444335566777778777899999999999999999999999888776666554432     34667777788899


Q ss_pred             HhhhhhhhhccHHHhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          181 GVGEASFISLAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      |++.+...+...++++|..+       .++.|...+......-+|..+++.+.|++.+..|+
T Consensus       335 g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        335 NIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999965       34456688999999999999999999888765544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.86  E-value=2e-09  Score=74.47  Aligned_cols=76  Identities=28%  Similarity=0.322  Sum_probs=70.6

Q ss_pred             CCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHH
Q 013356           99 KGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIA  174 (444)
Q Consensus        99 ~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~  174 (444)
                      |.|+|.+|.+++|.++|.++.|++.+.+++|+.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus         9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            4577889999999999999999999999999999999999999998889999999999999999999999887653

Note that many members are hypothetical proteins.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.85  E-value=5.4e-08  Score=85.96  Aligned_cols=150  Identities=19%  Similarity=0.126  Sum_probs=121.3

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      |.+..|-|+|+.+.|++.+...+.....++....+++|. .+|+..+..+++..++.+.+.+.+.-..++- -++.|+|.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~  310 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ  310 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence            889999999999999999999999999999999999965 6888888888888888888887765443333 49999999


Q ss_pred             hhhhhccHHHhhhcCCCC-chhHHHHHHhhhcccccchhhhHHHHhhccc-chhHHHHHHHHHHHHHHHHHHhh
Q 013356          185 ASFISLAAPFIDDNAPVP-QKTAWLSMFYMCIPTGVALGYVYGGVVGSHL-NWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~-~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      |..++.+..++.+..+.. +-++..++.+....+=...||.+.|++.|.. +|+..+.......+...+..+..
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999998887643 4445555555555555677899999998865 59999888877777766666554

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.84  E-value=3.4e-08  Score=95.23  Aligned_cols=140  Identities=16%  Similarity=0.194  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhhh----hhhh-cCCcchh--HHHHHHHHHHHHhhhc---------hhhHHHHHHHHHHhHh
Q 013356          119 DGVLSSAFMVGLLVASPIFAS----LAKS-HNPFRLI--GVGLSVWTFATAGCGS---------SFDFWSIAICRMLVGV  182 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~g~----l~dr-~Grr~~l--~~~~~~~~~~~~~~~~---------~~s~~~l~~~r~l~G~  182 (444)
                      .+++.++..+...+.+++..+    +.|| .+.+...  .+|+++.+++.+..++         ..|++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            678889999988888888664    4444 2333433  7788888888777764         4699999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      |.....|....++.+..|++.||+++|++.....+|..+++.++....+..+|...|...++..++..++.++..|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888777778999999888887777776665544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.83  E-value=5.8e-08  Score=91.15  Aligned_cols=120  Identities=14%  Similarity=0.055  Sum_probs=88.1

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh---c-hhhHHHHHHHHHHhHhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG---S-SFDFWSIAICRMLVGVG  183 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~s~~~l~~~r~l~G~~  183 (444)
                      +.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+.++..+..+...   . ..+++.+.++-.+.+.+
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC  300 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4566899999999999999999999999999999999999999888776544433322   1 23455555555555555


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhh-cccccchhhhHHHH
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMC-IPTGVALGYVYGGV  228 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~l~~~  228 (444)
                      .+........++.|..| ++|+.+.++.... ..+|..+++++++.
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56666666777888776 8899999887553 45666677766543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.83  E-value=6.6e-09  Score=96.47  Aligned_cols=118  Identities=16%  Similarity=0.151  Sum_probs=103.2

Q ss_pred             cc-cccccccC-ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh---hHHHHHHHHHHh
Q 013356          106 SG-IQGDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF---DFWSIAICRMLV  180 (444)
Q Consensus       106 ~~-i~~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~---s~~~l~~~r~l~  180 (444)
                      |. +.+++|.+ ..+.+++.+...++..++.++.|++.||+|+|+..........++.+...+..   +....++.-++.
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLI  309 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            44 48889999 78999999999999999999999999999998888877777777776665543   457777788999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhh
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGY  223 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  223 (444)
                      |++.+...+....++.|.+|+++||++.++.+...++|..+||
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=7.8e-09  Score=92.03  Aligned_cols=149  Identities=12%  Similarity=0.110  Sum_probs=123.1

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      +.+.+..+..++|+..--..+.+.++..+.|.++||++  |......++++.++++...-+++++.++++-++..|++.+
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~  376 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIG  376 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHH
Confidence            55667766668998888889999999999999999999  6555556677777777777889999999999999998888


Q ss_pred             hhhhccHHHhhhcCCCC------chhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          186 SFISLAAPFIDDNAPVP------QKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      ...........+..+.+      --|...++...++++|.++||.++|.+.+..|++|.-.+.++..++..-+..++
T Consensus       377 ~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  377 LADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666666666543      346889999999999999999999999999999999999999888776655443

>PRK09669 putative symporter YagG; Provisional

Probab=98.80  E-value=9e-08  Score=91.89  Aligned_cols=120  Identities=13%  Similarity=0.081  Sum_probs=95.1

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHhHhhhhhhhhccHH
Q 013356          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS--SFDFWSIAICRMLVGVGEASFISLAAP  193 (444)
Q Consensus       116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~~~g~~~~~~~~  193 (444)
                      +...+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+  .++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666677888889999999999999999999888766654443322  357777888889999999999999999


Q ss_pred             HhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      +++|..+       .++.|...+.......+|..+|+.+++.+.+..|+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999885       23346778899999999999999999988776655

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.80  E-value=4.9e-08  Score=90.79  Aligned_cols=143  Identities=8%  Similarity=-0.087  Sum_probs=98.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc---chhHH-HHHHHHHHHHhhhchhhHHHHHHHHHHhH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF---RLIGV-GLSVWTFATAGCGSSFDFWSIAICRMLVG  181 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr---~~l~~-~~~~~~~~~~~~~~~~s~~~l~~~r~l~G  181 (444)
                      |.+-++.|.+.. .+...++..+...++   .++++||.+||   +.... ..++.++.....++.++....++.-.+.|
T Consensus       216 p~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  291 (368)
T TIGR00903       216 EAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAG  291 (368)
T ss_pred             HHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            556566777654 555555555544444   47777877654   33332 34444444444455555555555556677


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ++....++...++.+|.+|++.|+++.|+.+....+|..++|++.+.+..  +-+..|.+.+++.++..+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       292 LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            77777777788999999999999999999999999999999988877763  677788888777777666554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.78  E-value=1.5e-07  Score=88.70  Aligned_cols=135  Identities=10%  Similarity=-0.129  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh-ch-----hhHHHHHHHHHHhHhhhhhhhhccHHHhh
Q 013356          123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-SS-----FDFWSIAICRMLVGVGEASFISLAAPFID  196 (444)
Q Consensus       123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~  196 (444)
                      ..+..+...+..+++|+++||+|+|+++.++.+...++..... ..     .+++.+.+.-+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            4445677888999999999999999999998887777664321 11     35666666555544555544555666676


Q ss_pred             hcCCC---------------------CchhHHHHHHhhhcccccchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 013356          197 DNAPV---------------------PQKTAWLSMFYMCIPTGVALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       197 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      +++|+                     ++-|.+.|+..+...+|..+.|.+-+...+. -++...|++..+..+++.++.|
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            66663                     1567889999999999999999766665544 3488888888888888777776


Q ss_pred             hhc
Q 013356          255 VIK  257 (444)
Q Consensus       255 ~~~  257 (444)
                      +..
T Consensus       452 ~~y  454 (462)
T PRK15034        452 LVY  454 (462)
T ss_pred             HHh
Confidence            654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.77  E-value=1.4e-08  Score=89.42  Aligned_cols=129  Identities=6%  Similarity=-0.016  Sum_probs=99.6

Q ss_pred             HHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH
Q 013356          127 MVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA  206 (444)
Q Consensus       127 ~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~  206 (444)
                      .+.-..|.++.+.+.||+|||+.+..+.++++++.++...+.+-..+.+.-+..-+..++.+.+.++|..|.+|.+-|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            45567899999999999999999999999999999988877654444444444444455567788999999999999999


Q ss_pred             HHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          207 WLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       207 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      ..|......-+|.++.|+++ ...+ ..-..+..+.+..+++..+...++.
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheeee
Confidence            99999999999999999998 3222 2334556666666666666655553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.75  E-value=1.2e-06  Score=82.74  Aligned_cols=254  Identities=13%  Similarity=0.057  Sum_probs=151.3

Q ss_pred             ccccccccc-----CccchhHHHHHHHHHHHHH-hhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch----h-------
Q 013356          106 SGIQGDFKL-----NNFQDGVLSSAFMVGLLVA-SPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS----F-------  168 (444)
Q Consensus       106 ~~i~~~~~~-----s~~~~~~~~s~~~l~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~-------  168 (444)
                      ..+.+.+.+     +.+.+.++-+...+...+. .++.+++++|++|++++-+....+....++.++.    +       
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~  106 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTA  106 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcH
Confidence            567777655     3357888888777776666 8999999999999999888777777766666554    1       


Q ss_pred             --------------------hHHHHHHHHHHhHhhhhhhhh-ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHH
Q 013356          169 --------------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (444)
Q Consensus       169 --------------------s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~  227 (444)
                                          +.|...+.-+...+-.....+ .-..+.+|.+..++-.|..+++..+.++|.++++.+..
T Consensus       107 ~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~  186 (472)
T TIGR00769       107 LADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIK  186 (472)
T ss_pred             HHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                133333444455555555555 67889999999999999999999999999999998888


Q ss_pred             Hhhcc--------cchh----HHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcc
Q 013356          228 VVGSH--------LNWR----YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDI  295 (444)
Q Consensus       228 ~l~~~--------~~wr----~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (444)
                      ++.+.        -.|.    ..+.+.++..++...+.+ .+.+....  +++..... +  .                 
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~-~--~-----------------  243 (472)
T TIGR00769       187 YFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYW-WVNRNVLT--DPRSYNPA-L--K-----------------  243 (472)
T ss_pred             HHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccC--Cccccchh-h--c-----------------
Confidence            77631        1342    233333333333333333 32221110  00000000 0  0                 


Q ss_pred             cchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcc--hh--hhh
Q 013356          296 SDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA--DM--MFG  371 (444)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~  371 (444)
                            . ++       .+...+..+.++.++++|.++.+++...++....+.+..-.-....+.+.....  +.  .+.
T Consensus       244 ------~-~k-------~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~  309 (472)
T TIGR00769       244 ------E-KK-------VKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFS  309 (472)
T ss_pred             ------c-cc-------CCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                  0 00       011123355677788999998888887777766665554332333333321111  11  222


Q ss_pred             hhhcccchhhhhhhhhhhhhhcccc
Q 013356          372 GVTIVCGIVGTISGGFILDQMGATI  396 (444)
Q Consensus       372 ~~~~~~~~~~~~~~g~l~dr~~~~~  396 (444)
                      ...++..++..++.+++.+|+|.+.
T Consensus       310 ~~~gi~tl~~~l~~~~l~~~~Gw~~  334 (472)
T TIGR00769       310 TWTGVVSVTMMLLSGNVIRKYGWLT  334 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3334444555666688888888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.72  E-value=1.1e-07  Score=90.03  Aligned_cols=128  Identities=9%  Similarity=-0.085  Sum_probs=99.5

Q ss_pred             ccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (444)
Q Consensus       113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  192 (444)
                      +.+....+...+.+..+..+|.++.+++.||+++|+++.+..++..+..++..+.++... +..-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            334444455666777888999999999999999999999999999888888888777554 5666788888888999999


Q ss_pred             HHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc------chhHHHHHHH
Q 013356          193 PFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL------NWRYAFWGEA  243 (444)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~------~wr~~f~~~~  243 (444)
                      ++..+..+++.+....++... . +|.++.|++.|.+.|+.      +.+..|++..
T Consensus       344 sl~~~~~g~~~~~~s~~l~~~-~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~  398 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVMA-I-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL  398 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHHH-H-hccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence            999999986554333333333 3 99999999999999854      4777777653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.68  E-value=4.5e-07  Score=82.54  Aligned_cols=125  Identities=16%  Similarity=0.152  Sum_probs=99.0

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh----hcCCcchhH-HHHHHHHHHHHhhhchhhH----------
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK----SHNPFRLIG-VGLSVWTFATAGCGSSFDF----------  170 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~l~-~~~~~~~~~~~~~~~~~s~----------  170 (444)
                      |.+.++.|++....+.+.-.-.+...+.+++.|..+|    ||||||-++ .+.+...++.++..++.++          
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            6677889999888888888888888999999999999    578777554 5666677777777776543          


Q ss_pred             -------HHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH-HHHHHhhhcccccchhhhHHHHhh
Q 013356          171 -------WSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA-WLSMFYMCIPTGVALGYVYGGVVG  230 (444)
Q Consensus       171 -------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~~~l~  230 (444)
                             ..++++--+.=++.......+-+++.|...++++.+ +.+++..+.++|..+|..+++++.
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~  203 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLG  203 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccC
Confidence                   334555566666766788889999999998877777 999999999999999998887543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.65  E-value=1.7e-07  Score=91.02  Aligned_cols=140  Identities=11%  Similarity=0.095  Sum_probs=106.5

Q ss_pred             hhHHHHHHHHHHHHHhhhh----hhhhhhcCCcchhHHHHHHHHHHHHhhhchhh---------HHHHHHHHHHhHhhhh
Q 013356          119 DGVLSSAFMVGLLVASPIF----ASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD---------FWSIAICRMLVGVGEA  185 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s---------~~~l~~~r~l~G~~~g  185 (444)
                      .+++.++..+...+..++.    +++.||++.++.+.+|+++.+++.+..+.+.+         .++++...++.|+|..
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5667777776666666655    66777777778889999999999988777655         4678889999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc----------ccchhHHHHHHHHHHHHHHHHHHh
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~----------~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      ...|....++.+..|++.||+++|.+.....+|..++..+......          ..+..+.|...++.+++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887777777776665542210          123678888888776666555554


Q ss_pred             hcc
Q 013356          256 IKP  258 (444)
Q Consensus       256 ~~p  258 (444)
                      ..|
T Consensus       478 ~~~  480 (500)
T PRK09584        478 TAP  480 (500)
T ss_pred             HHH
Confidence            434

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.63  E-value=5.2e-06  Score=76.18  Aligned_cols=135  Identities=13%  Similarity=0.005  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcC
Q 013356          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNA  199 (444)
Q Consensus       120 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~  199 (444)
                      +.+.-+-.+-..+.-+.+.++.+|+.-+.=..+..++..++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            33444444555667777888889988666667777888899999999999999999999999999988777777644 55


Q ss_pred             CCCchhHHHHHHhhhcccccchhhhHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          200 PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       200 ~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      ++    ..++-+..+.+.++++|+..-..+.+ .+  -|..+++...+.++..+..++.+|.+
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            53    35788888888888888876655555 44  47788888777776666666666653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.62  E-value=5.5e-07  Score=85.10  Aligned_cols=128  Identities=10%  Similarity=0.044  Sum_probs=97.2

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHH-HHHHhhhc--hhhHHHHHHHHHHhHhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT-FATAGCGS--SFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~-~~~~~~~~--~~s~~~l~~~r~l~G~~~  184 (444)
                      +.+.+|.++.+.+++.....++..+++++.+++.||+|++........+.. +.......  ..+.+.+++..++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            444588899999999999999999999999999999984333322222222 22122222  235677788889999999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchh
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR  236 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr  236 (444)
                      +...+....+..|.+| +++|...++.+....+|..+++.+++.+.....+.
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~  364 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFS  364 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            9999999999999887 68899999999999999999999998887653333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.61  E-value=1.1e-06  Score=82.06  Aligned_cols=123  Identities=18%  Similarity=0.138  Sum_probs=103.5

Q ss_pred             cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhhh
Q 013356          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFIS  189 (444)
Q Consensus       112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~  189 (444)
                      +|.++....+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+  +.+.+++..++.++|.+...+
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            455566667777888888888899999999999999999999999999999988876  788889999999999999999


Q ss_pred             ccHHHhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356          190 LAAPFIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (444)
Q Consensus       190 ~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  234 (444)
                      ...++++|..+       .++-|...+......-+|.+++..+.++..+..|
T Consensus       347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999998874       2344778888888888898888887777665443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.57  E-value=2e-09  Score=103.63  Aligned_cols=155  Identities=12%  Similarity=0.024  Sum_probs=106.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh--c---hhh-----HHHHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG--S---SFD-----FWSIAI  175 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~s-----~~~l~~  175 (444)
                      +.+.++.+.+..  -+......+...++.+....+.||+|||++++.+.++.+++.+..+  .   .++     +..+..
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            667777777665  2222233345556777777999999999999999998888877764  1   111     222222


Q ss_pred             HHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          176 CRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       176 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      ..+.......+..+....+..|.+|.+.|++..++......++..+++.+...+.+..+-...+++.++++++..+..++
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            22111111123456677889999999999999999999999999999988877776665345566666666777777778


Q ss_pred             hccCccc
Q 013356          256 IKPLQLK  262 (444)
Q Consensus       256 ~~p~~~~  262 (444)
                      ++||+..
T Consensus       435 ~lpET~g  441 (451)
T PF00083_consen  435 FLPETKG  441 (451)
T ss_pred             EEeeCCC
Confidence            8898543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.54  E-value=4.6e-07  Score=87.54  Aligned_cols=140  Identities=16%  Similarity=0.187  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhcCCcch-------hHHHHHHHHHHHHhhh-----c-----hhhHHHHHHHHHHhH
Q 013356          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRL-------IGVGLSVWTFATAGCG-----S-----SFDFWSIAICRMLVG  181 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~-----~~s~~~l~~~r~l~G  181 (444)
                      .+++.+.+.+...+.+++.+++.||+|+|+.       +.+|+++.+++.+..+     .     ..+++.++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            4667777778888999999999999999974       7777777776654321     1     135777888899999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc----------ccchhHHHHHHHHHHHHHHH
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS----------HLNWRYAFWGEAILMLPFAV  251 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~----------~~~wr~~f~~~~~~~~~~~~  251 (444)
                      +|.+...+....++.+..|++.+|.+++++.....+|..++..++.....          .-...+.|...++.+++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888765521          11245777777777776666


Q ss_pred             HHHhhcc
Q 013356          252 LAFVIKP  258 (444)
Q Consensus       252 ~~~~~~p  258 (444)
                      +.++..|
T Consensus       471 ~~~~~~~  477 (489)
T PRK10207        471 VMALMVP  477 (489)
T ss_pred             HHHHHHH
Confidence            6655444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.54  E-value=5.8e-06  Score=75.14  Aligned_cols=169  Identities=18%  Similarity=0.187  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh-h
Q 013356           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-S  143 (444)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r  143 (444)
                      +.+..+++..+...++...+-                    |+=.+-||++..+...+......|..++-...|++.. |
T Consensus       212 ~f~~fl~l~t~a~~~QD~iLE--------------------Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~  271 (403)
T PF03209_consen  212 RFFVFLFLGTLAFFMQDVILE--------------------PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRR  271 (403)
T ss_pred             HHHHHHHHHHHHHHhhHHHcC--------------------CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            355555666555555555543                    6667779999999999999999999999999999887 6


Q ss_pred             cCCcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356          144 HNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (444)
                      .++|+...+++.+..++..+.   +...+.+.+..+-++.|++.|.+.....+...+...+++.|.++|.+.....++..
T Consensus       272 ~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G  351 (403)
T PF03209_consen  272 LGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG  351 (403)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH
Confidence            788888888888877777664   44568889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhcc----------cchhHHHHHHHHHHHHHHHHH
Q 013356          221 LGYVYGGVVGSH----------LNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       221 ~~~~l~~~l~~~----------~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      ++..+++.+.|.          .+|-..|.+.++..++..++.
T Consensus       352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999887552          356777777766655444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.52  E-value=1.2e-05  Score=75.16  Aligned_cols=259  Identities=14%  Similarity=0.102  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc------h--h-------hHHHHHHHHHHhHhhh
Q 013356          120 GVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS------S--F-------DFWSIAICRMLVGVGE  184 (444)
Q Consensus       120 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~-------s~~~l~~~r~l~G~~~  184 (444)
                      +...-.-.+...+.++..|.+.||..|.++...+.+.--++..+.+.      .  +       -+..+++.-.+.|.-.
T Consensus        41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~  120 (432)
T PF06963_consen   41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE  120 (432)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence            33344455667788899999999999999987776654333332221      1  1       1122222222333221


Q ss_pred             hhh-hhccHHHhhhcC------CCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          185 ASF-ISLAAPFIDDNA------PVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       185 g~~-~~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      -.. .....+.=.||.      +++.+.+..+...-.--+..+++|++.|.+.+..+.+....+.++..++...+=++++
T Consensus       121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l  200 (432)
T PF06963_consen  121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL  200 (432)
T ss_pred             HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211 111222223443      3345566667776666778899999999999888888888877777776666555544


Q ss_pred             cCcc---cCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356          258 PLQL---KGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (444)
Q Consensus       258 p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      ..-.   +....+++.+......              .++   +..++.......++..+..+...++++..++.|.+..
T Consensus       201 ~~VY~~~P~L~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla  263 (432)
T PF06963_consen  201 ARVYNSVPALAVKKRSSESESSS--------------DEE---SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA  263 (432)
T ss_pred             HHHHHhChHhcCCCCCccccccc--------------ccc---ccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH
Confidence            2211   1111111111000000              000   0000000011111111233334556666777776655


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      ... ..+.++...++...+..|+.+. |+++... .+-....+.++.|+++..++.+|+|..+.
T Consensus       264 s~a-lalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~  325 (432)
T PF06963_consen  264 SFA-LALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA  325 (432)
T ss_pred             HHH-HHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence            544 3344444555566667788774 8887665 55566677889999999999999997643

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.50  E-value=2.7e-07  Score=86.23  Aligned_cols=112  Identities=8%  Similarity=-0.109  Sum_probs=85.1

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc--hh--hHHHHHHHHHHhHh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS--SF--DFWSIAICRMLVGV  182 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--s~~~l~~~r~l~G~  182 (444)
                      .+++.+|.++.+.+++.+.+.++..++.+++|+++||+|||+.+..+..+...+..+..+  .+  +.+.+++.-++.++
T Consensus       251 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (366)
T TIGR00886       251 FFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFF  330 (366)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            455678999999999999999999999999999999999998888777666666555443  22  55555555555555


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (444)
                      +.|........++.|..| +++|.+.|+.+...++|.
T Consensus       331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             Hhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            555555566677788877 799999999988887763

>PRK11462 putative transporter; Provisional

Probab=98.49  E-value=1.3e-06  Score=84.12  Aligned_cols=120  Identities=10%  Similarity=0.022  Sum_probs=83.9

Q ss_pred             ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchh--hHHHHHHHHHHhHhhhhhhhhccHH
Q 013356          116 NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSF--DFWSIAICRMLVGVGEASFISLAAP  193 (444)
Q Consensus       116 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~~~~~~  193 (444)
                      +...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+  +...+++.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788889999999999999999999987766555444444433332  2334445556678887777776677


Q ss_pred             HhhhcCC-------CCchhHHHHHHhhhcccccchhhhHHHHhhcccch
Q 013356          194 FIDDNAP-------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNW  235 (444)
Q Consensus       194 ~i~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~w  235 (444)
                      ++.|..+       .++.|...+.......+|..+++.+++.+.+..|+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7777765       33345666777788888999999888887654444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.45  E-value=9.7e-07  Score=77.32  Aligned_cols=296  Identities=10%  Similarity=-0.033  Sum_probs=174.2

Q ss_pred             ccccCccchh-HHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhh
Q 013356          111 DFKLNNFQDG-VLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFIS  189 (444)
Q Consensus       111 ~~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~  189 (444)
                      +.+++..++. -+.-.-.-.+.+.-++.=.+.|..--|++++.-.+.......+.-+.++.+.+-+..++-|...+ ...
T Consensus        35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEI  113 (433)
T KOG3810|consen   35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEI  113 (433)
T ss_pred             CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHH
Confidence            4455554432 12223333445566666678999999999999888888888999999999999999999999866 667


Q ss_pred             ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhhccCcccCCCCC
Q 013356          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPA  267 (444)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~--~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~  267 (444)
                      +.++++-+.++++++.++.+...++.-.|..+|..++..+.+..  +++..-.+.-....+..++. +++|..++..--.
T Consensus       114 AYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A-~fLP~v~rSl~f~  192 (433)
T KOG3810|consen  114 AYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLA-LFLPRVKRSLYFH  192 (433)
T ss_pred             hhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHH-hhCCCCchhhhhh
Confidence            88999999999999999999999999999999999998887543  33333333322222333333 3445432211111


Q ss_pred             ccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHH
Q 013356          268 ESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIG  347 (444)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (444)
                      ..+++..           ..+   .++...+.+...       ..+..+...++++....++|.+..-.+-+.+...+++
T Consensus       193 ~~~~~~~-----------v~~---~e~~~~~~~~~~-------~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~  251 (433)
T KOG3810|consen  193 RLEDKIS-----------VGD---LEEMNPQASYMS-------YLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYY  251 (433)
T ss_pred             cccccce-----------ecc---chhcCccchhhH-------HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhH
Confidence            1100000           000   000000000000       0001223345566677788888887777777777777


Q ss_pred             HHHhhccccccccccCCcchh---hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 013356          348 AYSYWGPKAGYNIYHMSNADM---MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLY  424 (444)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (444)
                      .+.+|.-..-.+.. -++...   ..-++..+.++++.++.|++--+..|+..   .++..+.+.-+..++.+...++.|
T Consensus       252 QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~---~ll~~~s~~~agllf~m~~t~~Iw  327 (433)
T KOG3810|consen  252 QVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGD---LLLAVGSAVQAGLLFIMAQTQHIW  327 (433)
T ss_pred             HHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhH---HHHHHHHHHhhhhhhhhhccccee
Confidence            76666544433322 111111   12233345566777888887655555422   334444555555555555566666


Q ss_pred             HHHHHHHHH
Q 013356          425 GFLALFTVG  433 (444)
Q Consensus       425 ~~~~~~~~~  433 (444)
                      ...+...+.
T Consensus       328 ~~Ya~yvlf  336 (433)
T KOG3810|consen  328 VCYAGYVLF  336 (433)
T ss_pred             hhhhhHHHH
Confidence            665555444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.8e-06  Score=77.70  Aligned_cols=142  Identities=15%  Similarity=0.110  Sum_probs=116.7

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      +.+..| .|+++.+.+...+.+..+..+|.+...++..|+...|.+.+..++..+.++..++.++...+. +-++.|+..
T Consensus       260 ~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-~l~~ig~F~  338 (422)
T COG0738         260 VSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-ALFLIGLFN  338 (422)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHh
Confidence            444444 788999999999999999999999999999999999999999999988889999999866554 447888999


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~  250 (444)
                      +..+|...+...+..| ++ ....+..-....+|.++.|.+-|++.|+.|-...+.+...+|.+..
T Consensus       339 simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         339 SIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999998 33 4445555566678999999999999999988887775555544444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.43  E-value=1.6e-06  Score=82.42  Aligned_cols=150  Identities=9%  Similarity=0.061  Sum_probs=103.4

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCC---------cchhHHHHHHHHHHHHhhhchhh-HHHHHHH
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNP---------FRLIGVGLSVWTFATAGCGSSFD-FWSIAIC  176 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~~~~~~~~~~~~~s-~~~l~~~  176 (444)
                      ++.+-+|.+-.+.|++.++..+...+..+++|.++||.-+         |..-.++....+++.+..++.++ .....+.
T Consensus       284 Y~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~  363 (466)
T KOG2532|consen  284 YLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI  363 (466)
T ss_pred             HHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH
Confidence            3556689999999999999999999999999999998855         22334556666666666676653 1111111


Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc---ccchhHHHHHHHHHHHHHHHHH
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---HLNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---~~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      -+..+++..+....+.........+++-+..+|+.+....+...++|.+.+.+..   ...||+.|++.+++.++..++.
T Consensus       364 ~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  364 LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            1222222222222222222222144888999999999999999999999999884   2479999999998877776554


Q ss_pred             Hhh
Q 013356          254 FVI  256 (444)
Q Consensus       254 ~~~  256 (444)
                      .++
T Consensus       444 ~~f  446 (466)
T KOG2532|consen  444 LFF  446 (466)
T ss_pred             eEe
Confidence            444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.42  E-value=2.9e-06  Score=71.71  Aligned_cols=94  Identities=15%  Similarity=0.110  Sum_probs=73.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      -.+-+.++....++|.+.-...-...+...+.|.++|+.|||+.-+.-++.+.+++ +.-.++.|-.++++|++-|+..+
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTs  139 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATS  139 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHH
Confidence            34567788889999988877777778888899999999999997555555554433 34567899999999999999999


Q ss_pred             hhhhccHHH-hhhcCC
Q 013356          186 SFISLAAPF-IDDNAP  200 (444)
Q Consensus       186 ~~~~~~~~~-i~~~~~  200 (444)
                      ..++.-.++ +.|+..
T Consensus       140 LLFSaFEsWliaEHne  155 (454)
T KOG4332|consen  140 LLFSAFESWLIAEHNE  155 (454)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            988877665 577753

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=6.8e-06  Score=76.77  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC
Q 013356          123 SSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVP  202 (444)
Q Consensus       123 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~  202 (444)
                      .++.+..+.+.+++.+.+.|+.|.|+.+.++...+....+..-+-+ -+.++..-.+.|+|.+..+..-..+++|+.+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            6777888889999999999999999999999999988887776655 556678889999999999999999999999999


Q ss_pred             chhHHHHHHhhhcccccchhhhHHH
Q 013356          203 QKTAWLSMFYMCIPTGVALGYVYGG  227 (444)
Q Consensus       203 ~r~~~~~~~~~~~~~G~~~~~~l~~  227 (444)
                      .+.+..++..+....+.++|..+-.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            9999999988888888777765543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.40  E-value=2.4e-06  Score=67.82  Aligned_cols=115  Identities=9%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             cCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHH
Q 013356          114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAP  193 (444)
Q Consensus       114 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~  193 (444)
                      +++..--.-.++......+.+++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..++....
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~  112 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT  112 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence            444444445567777788888999999999999999999999998655443 5677888999999999999999999999


Q ss_pred             HhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356          194 FIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (444)
Q Consensus       194 ~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  229 (444)
                      ++.+..++++|++..+++......+.++|.++...+
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888888877777665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.39  E-value=3.4e-06  Score=80.25  Aligned_cols=141  Identities=15%  Similarity=0.022  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhcCC-cchhHHHHHHHHHHHHhhhchhh---------------------HHHHHHHHH
Q 013356          121 VLSSAFMVGLLVASPIFASLAKSHNP-FRLIGVGLSVWTFATAGCGSSFD---------------------FWSIAICRM  178 (444)
Q Consensus       121 ~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~s---------------------~~~l~~~r~  178 (444)
                      +....+.+...+.+++..++.+|+|+ |++..++.++.+++.+...+.++                     .+..++.-.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44556666667888889999999995 67768888888888777765443                     366778889


Q ss_pred             HhHhhhhhhhhccHHHhhhcCCC--CchhHHHHHHhhhcccccchhhhHHHHhhcccc--hhHHHHHHHHHHHHHHHHHH
Q 013356          179 LVGVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN--WRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       179 l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--wr~~f~~~~~~~~~~~~~~~  254 (444)
                      +.|+..+..+..-++++++..++  ++.|..+|+++.+..+.+++..+..|.+.+.+|  -.+.+.+.++..++.++..+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  456999999999999999999987777554433  56788888999999999999


Q ss_pred             hhccCcc
Q 013356          255 VIKPLQL  261 (444)
Q Consensus       255 ~~~p~~~  261 (444)
                      +.+|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            9888754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.38  E-value=3.6e-07  Score=83.20  Aligned_cols=131  Identities=9%  Similarity=-0.042  Sum_probs=101.2

Q ss_pred             HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhh-H-------HHHHHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356          129 GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFD-F-------WSIAICRMLVGVGEASFISLAAPFIDDNAP  200 (444)
Q Consensus       129 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s-~-------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  200 (444)
                      ++..|-.+...+.|+.|||++.+.|.+++++..+..+...| .       ..+.+..++.-+|   -......+-+|.+|
T Consensus       360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FP  436 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFP  436 (538)
T ss_pred             ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhch
Confidence            33446777888999999999999999999999999998876 1       1222233333333   23455666799999


Q ss_pred             CCchhHHHHHHhhhcccccchhhhHHHHhhc-----ccchhHHHHHHHHHHHHHHHHHHhhccCcccC
Q 013356          201 VPQKTAWLSMFYMCIPTGVALGYVYGGVVGS-----HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKG  263 (444)
Q Consensus       201 ~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~  263 (444)
                      .+-|+..-|+..+..-.|.++|...-.++.+     ..+.|+.|++.+...++..+..+ ++||+...
T Consensus       437 arvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~  503 (538)
T KOG0252|consen  437 ARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGK  503 (538)
T ss_pred             HHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeeccccc
Confidence            9999999999999999999999998888888     67899999999988777666554 44675443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.30  E-value=9.5e-06  Score=79.37  Aligned_cols=155  Identities=11%  Similarity=-0.041  Sum_probs=102.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhH-------------HH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDF-------------WS  172 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~-------------~~  172 (444)
                      +.+-+..|.+... .+...+..+...++..+...+.||+|||+.++.+.....++.++.+.....             ..
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            5666666665443 555666667777788888999999999999999999999999887754211             12


Q ss_pred             HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHH-
Q 013356          173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAV-  251 (444)
Q Consensus       173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~-  251 (444)
                      +...-+.......+..++...+.+|.+|.+-|+++.++......+...+-......+.+..++...|...+..+.+..+ 
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~  477 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLII  477 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            2222222223233355666678899999999999998887766665444333333333333345667766666666666 


Q ss_pred             HHHhhccCcc
Q 013356          252 LAFVIKPLQL  261 (444)
Q Consensus       252 ~~~~~~p~~~  261 (444)
                      ..++++||+.
T Consensus       478 fv~~~~pETk  487 (513)
T KOG0254|consen  478 FVFFFVPETK  487 (513)
T ss_pred             HheEEcccCC
Confidence            5677778854

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.25  E-value=1.7e-05  Score=75.35  Aligned_cols=143  Identities=15%  Similarity=-0.010  Sum_probs=94.0

Q ss_pred             ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhh-----chhhHHHHHHHHHH
Q 013356          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCG-----SSFDFWSIAICRML  179 (444)
Q Consensus       106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~s~~~l~~~r~l  179 (444)
                      |.+ ++.+|.++.+.++.......+..+++.+.+++.++.++++.......+..++.++..     ..++++.++++.++
T Consensus       242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l  321 (413)
T PRK15403        242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSL  321 (413)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            544 455689999999998888888888888888877555544443333222223322222     23344446778888


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~  250 (444)
                      .|+|.+...+......-+ -....+|++.++.+.....+..+++..++++.++ +=++.|...+++.....
T Consensus       322 ~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        322 YAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV  390 (413)
T ss_pred             HHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence            899988887777643321 1223578999988888888888888888888664 45667766655544433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.12  E-value=3.2e-05  Score=75.01  Aligned_cols=109  Identities=15%  Similarity=0.056  Sum_probs=86.6

Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh-HHHHHHHHHHHHhhhc--hhhHHHHHHHHHHhHhhhhhhhhccHHH
Q 013356          118 QDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGS--SFDFWSIAICRMLVGVGEASFISLAAPF  194 (444)
Q Consensus       118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~--~~s~~~l~~~r~l~G~~~g~~~~~~~~~  194 (444)
                      ..++....+.++..+++++.|.+..+++|-|.. +++.++..++.-+++.  .+|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            578888889999999999999999988866554 5666666554333332  3466666788899999999988888888


Q ss_pred             hhhcCCCCchhHHHHHHhhhcccccchhhhHH
Q 013356          195 IDDNAPVPQKTAWLSMFYMCIPTGVALGYVYG  226 (444)
Q Consensus       195 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~  226 (444)
                      +.-..|+++-|.+.++..+.-.+|+.+|..+.
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            88889999999999999998888888877654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.11  E-value=0.0001  Score=65.83  Aligned_cols=263  Identities=9%  Similarity=-0.038  Sum_probs=146.6

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh-
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK-  142 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-  142 (444)
                      ++-+..+.+.++..+.-.+..+.                  +|.+-+.-|.|.++.+...-++.  -...-+.|.++.| 
T Consensus        30 ~~~illLl~LYllQGiP~GL~~~------------------iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs   89 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIGA------------------IPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDS   89 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhhh------------------hHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHH
Confidence            33566677778888887776662                  28888877888777665543332  1234578888999 


Q ss_pred             ----hcCCcchhHH-HHHHHHHHHHhhh-----------chhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhH
Q 013356          143 ----SHNPFRLIGV-GLSVWTFATAGCG-----------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTA  206 (444)
Q Consensus       143 ----r~Grr~~l~~-~~~~~~~~~~~~~-----------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~  206 (444)
                          |+||||.-++ +..+.+....+.+           -.++...+...-++.-+..+.--.+.-.+.-....+++-|.
T Consensus        90 ~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgy  169 (510)
T KOG3574|consen   90 VYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGY  169 (510)
T ss_pred             HHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCc
Confidence                9999986433 3333333333222           23344444445556666666666666666666777788888


Q ss_pred             HHHHHhhhcccccchhhhHHHHhhc-----c--cchh---------HHHHHHHHHHHHHHHHHHhhccCcccCCCCCccc
Q 013356          207 WLSMFYMCIPTGVALGYVYGGVVGS-----H--LNWR---------YAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  270 (444)
Q Consensus       207 ~~~~~~~~~~~G~~~~~~l~~~l~~-----~--~~wr---------~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  270 (444)
                      +......+.+.|..++..+--.+..     .  .+|.         ...+..+.+.++...+..++-+|++....+++. 
T Consensus       170 aST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e~~-  248 (510)
T KOG3574|consen  170 ASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEELE-  248 (510)
T ss_pred             hhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhh-
Confidence            8777777777777666554322221     0  1221         122333334344444444443331111000000 


Q ss_pred             cchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHH
Q 013356          271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYS  350 (444)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (444)
                                                                 ....+..+.++++++-|....++......-.++.+-.
T Consensus       249 -------------------------------------------~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~d  285 (510)
T KOG3574|consen  249 -------------------------------------------LGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAAD  285 (510)
T ss_pred             -------------------------------------------cCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhh
Confidence                                                       1122234455677777777777776666667777766


Q ss_pred             hhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcc
Q 013356          351 YWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGA  394 (444)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  394 (444)
                      ...+.-+.+ +|.+.....   +..+..++..++.++...|+-.
T Consensus       286 a~t~LkLle-~Gv~ke~La---l~~v~~~plqI~l~~~~gk~ta  325 (510)
T KOG3574|consen  286 ALTSLKLLE-HGVPKEELA---LIAVPLVPLQIALPLYIGKWTA  325 (510)
T ss_pred             hccchHHHH-cCCChhHhe---eeeeehhhHHHhhhhhheeecC
Confidence            667776666 577765542   2234555566666666555533

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.08  E-value=0.00075  Score=64.46  Aligned_cols=246  Identities=14%  Similarity=0.103  Sum_probs=136.2

Q ss_pred             CccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--------------------------
Q 013356          115 NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------------------------  167 (444)
Q Consensus       115 s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------------  167 (444)
                      .++.+..+=....+ +..+......+++++++|.+++-+....+.....+.++.                          
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            34445555443333 445567788999999999999887777666666655542                          


Q ss_pred             -----hhHHHHHHHHHHhHhhhhhhhh-ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc---------c
Q 013356          168 -----FDFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS---------H  232 (444)
Q Consensus       168 -----~s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~---------~  232 (444)
                           -+.|.+.+.-++.-+-.....+ .-..+..|.++.++-.+..+++..+.++|.+++..+..++.+         .
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~  215 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGV  215 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence                 0223333333333343333333 457889999999999999999999999999998888877766         1


Q ss_pred             cchhHHHHHHH----HHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhccc
Q 013356          233 LNWRYAFWGEA----ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIG  308 (444)
Q Consensus       233 ~~wr~~f~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (444)
                      ..|...+....    +.+++...+ ...+.+....  .++..+.. ++                          +++   
T Consensus       216 ~~~~~~l~~l~~~v~~~g~~i~~~-~~~~~~~vl~--~~~~~~~~-~~--------------------------~kk---  262 (491)
T PF03219_consen  216 DAWELSLNSLMGIVLILGIVIILL-YRYMNKNVLT--DPRFYPSA-KK--------------------------KKK---  262 (491)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHccC--ccccchhh-hc--------------------------ccc---
Confidence            24654332221    111221211 2222211100  00000000 00                          000   


Q ss_pred             chhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcc--h--hhhhhhhcccchhhhhh
Q 013356          309 ESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNA--D--MMFGGVTIVCGIVGTIS  384 (444)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~  384 (444)
                          .+...+..+.++.++++|.+..+++...++....+.+....-..+.+.+..+.+  +  ..+....++..++..++
T Consensus       263 ----~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l  338 (491)
T PF03219_consen  263 ----KKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFL  338 (491)
T ss_pred             ----cCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                011112334566778899988888888777777666654333333333322211  1  12233444555556678


Q ss_pred             hhhhhhhhcccch
Q 013356          385 GGFILDQMGATIS  397 (444)
Q Consensus       385 ~g~l~dr~~~~~~  397 (444)
                      ++.+.+|+|.+..
T Consensus       339 ~~~iir~~GW~~~  351 (491)
T PF03219_consen  339 SSNIIRRFGWRTA  351 (491)
T ss_pred             HHHHHHHhhHHHH
Confidence            8888888887743

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PTZ00207 hypothetical protein; Provisional

Probab=98.07  E-value=1.5e-05  Score=77.72  Aligned_cols=150  Identities=5%  Similarity=-0.145  Sum_probs=109.2

Q ss_pred             ccccccc-cc-CccchhH-HHHHHHHHHHHHhhhhhhhhhh---------cCCcchhHHHHHHHHHHHHhhhchhhHHHH
Q 013356          106 SGIQGDF-KL-NNFQDGV-LSSAFMVGLLVASPIFASLAKS---------HNPFRLIGVGLSVWTFATAGCGSSFDFWSI  173 (444)
Q Consensus       106 ~~i~~~~-~~-s~~~~~~-~~s~~~l~~~~~~~~~g~l~dr---------~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l  173 (444)
                      ..|.+.+ |. +..+.+. +.+++.++..+|.+..|.+...         +.|--.+.+..+ ..++.++.++.-....+
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHh
Confidence            5566777 54 2232233 7888889999999999887721         222222334444 66666666665444789


Q ss_pred             HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchh-hhHHHHhhccc----------c---hhHHH
Q 013356          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALG-YVYGGVVGSHL----------N---WRYAF  239 (444)
Q Consensus       174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~-~~l~~~l~~~~----------~---wr~~f  239 (444)
                      ++.-++.|++.|..+++....++|+|. |+-|+-..+......+|..+- -.+.|.+.|+.          |   .|.+|
T Consensus       456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            999999999999999999999999999 999999988888888887775 44666665431          2   78899


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 013356          240 WGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~  257 (444)
                      ++.+.+++...++...+.
T Consensus       535 ~v~~~~~~~g~~~s~~l~  552 (591)
T PTZ00207        535 AFLLGLSFLAFITSTYVH  552 (591)
T ss_pred             HHHHHHHHHHHHHHhhee
Confidence            999999888877766554

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.94  E-value=1.2e-05  Score=55.41  Aligned_cols=53  Identities=21%  Similarity=0.159  Sum_probs=46.8

Q ss_pred             ccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHH
Q 013356          105 GSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVW  157 (444)
Q Consensus       105 l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  157 (444)
                      +|...++.|+|+.++|.+.++..+...++++++|.++||+|+++.++....+.
T Consensus        23 l~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   23 LPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            36677789999999999999999999999999999999999999877665543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.94  E-value=2.7e-05  Score=74.39  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=90.1

Q ss_pred             cccccc-cccCccchhHHHHHHHHHHHHHhhhhhhhhhh----cCCcchhHHHHHHHHHHH-HhhhchhhHHHHHHHHHH
Q 013356          106 SGIQGD-FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS----HNPFRLIGVGLSVWTFAT-AGCGSSFDFWSIAICRML  179 (444)
Q Consensus       106 ~~i~~~-~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~s~~~l~~~r~l  179 (444)
                      |.+-++ .|.|..+.+.+...+.++.+++.++.|+++||    ..+|......+.+..+.. +.....++......+-+.
T Consensus       297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~  376 (495)
T KOG2533|consen  297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLI  376 (495)
T ss_pred             HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHh
Confidence            666666 56889999999999999999999999999999    677777777666665555 444444444444444444


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchh-HHHHHHhhhcccccch-hhhHHHHhhcccchhHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKT-AWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAFWGEA  243 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~G~~~-~~~l~~~l~~~~~wr~~f~~~~  243 (444)
                      .+.+.....+.......+...++.|. ...+....+.+.+.++ ++..-+.....++|-..|....
T Consensus       377 ~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  377 GPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             cchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            44555556666777777777654433 3444444444444433 3333444556678888884443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.88  E-value=3.3e-05  Score=72.27  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             chhHHHHHHHHHHHHhhhchh---h------HHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCC---chhHHHHHHhhhc
Q 013356          148 RLIGVGLSVWTFATAGCGSSF---D------FWSIAICRMLVGVGEASFISLAAPFIDDNAPVP---QKTAWLSMFYMCI  215 (444)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~~~---s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  215 (444)
                      |.++++.++..+|.++..++.   +      .+.++++-.+.++|.|+.-+....+++|.++++   +|.....+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            467788888888888844432   2      367889999999999999999999999999865   4677888999999


Q ss_pred             ccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 013356          216 PTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFV  255 (444)
Q Consensus       216 ~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~  255 (444)
                      ++|..++..+.+++.+++||.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998877666554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.87  E-value=0.00043  Score=65.81  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=110.1

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhh-hhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFA-SLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~  184 (444)
                      -.+...+++++.+.+...+...+...+++++.. .+...+|-|++...|++.-.+...+.+++++.|+++...++.++. 
T Consensus       266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-
Confidence            346678899999999998888888888888887 777889999999999999999999999999999999999988886 


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  229 (444)
                      +...+...+.++.+.+++++|++.++....-++...++|.+-+.+
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            557899999999999999999999999999999999998876655

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.85  E-value=0.00012  Score=71.95  Aligned_cols=153  Identities=12%  Similarity=-0.095  Sum_probs=110.4

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHH---HHHHHHHhHhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWS---IAICRMLVGVGE  184 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~---l~~~r~l~G~~~  184 (444)
                      ....+|.+   ..+................+.+.|++|||.....+.++..++.++.++..+...   ..+...+..++.
T Consensus       344 ~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (521)
T KOG0255|consen  344 NVSGLGGN---IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFI  420 (521)
T ss_pred             hhhhcCch---HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            33444443   334444444455666666689999999999999999999999999998775443   555666666666


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF  264 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~  264 (444)
                      +..+.....+.+|.+|...|..+.+.......+|.+++|.+...... ......+.+.+..+.+..++..+++||+....
T Consensus       421 ~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~  499 (521)
T KOG0255|consen  421 GSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKP  499 (521)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            66677779999999999999999999999999999999988765544 22222323345566666666667778876543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.71  E-value=7.9e-05  Score=66.73  Aligned_cols=123  Identities=16%  Similarity=0.122  Sum_probs=112.5

Q ss_pred             ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhh
Q 013356          109 QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEAS  186 (444)
Q Consensus       109 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~  186 (444)
                      .+.+|.++.|.|-+.+...++..+.+....+..||..  -+-.+..++.+..-..++.+.++....+.++-.+-.+..+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999988  77788888888888888888999999999999999999898


Q ss_pred             hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc
Q 013356          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS  231 (444)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~  231 (444)
                      ..+....++....|.++||...|+......++-++||+++|.+..
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            889999999999999999999999999999999999999987754

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.63  E-value=0.00016  Score=66.66  Aligned_cols=114  Identities=9%  Similarity=0.035  Sum_probs=82.4

Q ss_pred             CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHh---hhchhhHHHHHHHHHHhHhhhhhhhhcc
Q 013356          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAG---CGSSFDFWSIAICRMLVGVGEASFISLA  191 (444)
Q Consensus       115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~s~~~l~~~r~l~G~~~g~~~~~~  191 (444)
                      ...+..+...+|.+|-.++.--...+  |+-+-+++.+-.++..+..++   .-+.+|.|.+++.-+..|+..|..+...
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNt  356 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNT  356 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            35677788888888766664332221  332323322222222222222   3356899999999999999999999999


Q ss_pred             HHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh
Q 013356          192 APFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG  230 (444)
Q Consensus       192 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  230 (444)
                      ...+.|-.++++|..+++....+-++|.+++.+++-.+-
T Consensus       357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988876654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.58  E-value=0.00052  Score=65.89  Aligned_cols=140  Identities=11%  Similarity=0.018  Sum_probs=102.5

Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhcCC--cc-----hhHHHHHHHHHHHHhhhch---------hhHHHHHHHHHHhH
Q 013356          118 QDGVLSSAFMVGLLVASPIFASLAKSHNP--FR-----LIGVGLSVWTFATAGCGSS---------FDFWSIAICRMLVG  181 (444)
Q Consensus       118 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr--r~-----~l~~~~~~~~~~~~~~~~~---------~s~~~l~~~r~l~G  181 (444)
                      ..+|..+++.+...+.+++.+++=.|.+|  |.     =+.+|+++.+++.+...++         .|.+++++.-++++
T Consensus       309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t  388 (493)
T PRK15462        309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG  388 (493)
T ss_pred             CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            35788899999888888888888666633  21     1567888888877665431         36777889999999


Q ss_pred             hhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhc-ccccchhhhHHHHhhc------------ccchhHHHHHHHHHHHH
Q 013356          182 VGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI-PTGVALGYVYGGVVGS------------HLNWRYAFWGEAILMLP  248 (444)
Q Consensus       182 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~G~~~~~~l~~~l~~------------~~~wr~~f~~~~~~~~~  248 (444)
                      +|.-...|++.+++++..|++.||.++|.+.... .+|..++..+++....            ...+...|...++..++
T Consensus       389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  468 (493)
T PRK15462        389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA  468 (493)
T ss_pred             HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999996633 5676666666655431            11355677777777666


Q ss_pred             H-HHHHHhhc
Q 013356          249 F-AVLAFVIK  257 (444)
Q Consensus       249 ~-~~~~~~~~  257 (444)
                      . .++.+.++
T Consensus       469 ~~~~~~~~~~  478 (493)
T PRK15462        469 CVGVVLMIWL  478 (493)
T ss_pred             HHHHHHHHHH
Confidence            6 55444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.50  E-value=0.001  Score=62.57  Aligned_cols=64  Identities=19%  Similarity=0.024  Sum_probs=52.4

Q ss_pred             ccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchh-HHHHHHHHHHHHhhhc
Q 013356          103 TSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLI-GVGLSVWTFATAGCGS  166 (444)
Q Consensus       103 p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~  166 (444)
                      |.++.+-+++|+++.+.|.+.+.-.+..+++.+++|+++|||-+||-+ +.+++....+.++..+
T Consensus        32 pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   32 PLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             hHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            445788899999999999999999999999999999999999865554 4556666666666555

>PRK03612 spermidine synthase; Provisional

Probab=97.43  E-value=0.0022  Score=62.33  Aligned_cols=136  Identities=10%  Similarity=-0.095  Sum_probs=81.8

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHH---HHHHhh----hchhhH-HHHHHHHHH
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWT---FATAGC----GSSFDF-WSIAICRML  179 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~----~~~~s~-~~l~~~r~l  179 (444)
                      +.--+|-+....+.+.+++.+|.++|+.+.+++.++.-|+.. .+-..+..   ++..+.    ++...+ ..++..-++
T Consensus        41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444567788888999999999999999999988744322221 11111111   111111    111111 223344566


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhh-cccchhHHHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVG-SHLNWRYAFWGEAIL  245 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~-~~~~wr~~f~~~~~~  245 (444)
                      .|+..|+..|....+..+... ++-|...|-.+....+|.++|.++.+++. ...|-....++.+.+
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l  185 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            788888887777776655432 34567788889999999999999887754 345543333333333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.39  E-value=0.0038  Score=58.43  Aligned_cols=74  Identities=8%  Similarity=-0.010  Sum_probs=43.4

Q ss_pred             ccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchhhhhhhhcccchhhhhhhhhhhhhhcc
Q 013356          317 SQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTIVCGIVGTISGGFILDQMGA  394 (444)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~  394 (444)
                      ++..+.+.+++|.|....+++.....-.++...-.-...=+.+ .|++.....   +..+..++..++.++++.|+.+
T Consensus       265 ~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LA---l~~li~~P~qii~~~~~~Kws~  338 (544)
T PF13000_consen  265 KDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLA---LLVLIDFPFQIILPYYIGKWSA  338 (544)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhH---HHHHHhhhHHHHHHHHhhhhhc
Confidence            3445566677888888887777666666555444433443444 567654442   2234455666666776666644

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.30  E-value=0.0014  Score=64.09  Aligned_cols=149  Identities=14%  Similarity=0.109  Sum_probs=117.9

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchhh---------------
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSFD---------------  169 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~s---------------  169 (444)
                      ..+.++++.+...+.-..+.+.-......+..+.++|-| ||-+++.++.++..++.++..++..               
T Consensus        62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~  141 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG  141 (571)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence            567788888877777778888888888889999999975 8999999999998888665443211               


Q ss_pred             ----------HHHHHHHHHHhHhhhhhhhhccHHHhhhcCC---C-Cc--hhHHHHHHhhhcccccchhhhHHHHhhccc
Q 013356          170 ----------FWSIAICRMLVGVGEASFISLAAPFIDDNAP---V-PQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHL  233 (444)
Q Consensus       170 ----------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~-~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  233 (444)
                                ...++.+.-+..+|.|+.-+...++-+|-++   + ++  +...+.++....++|..++..+-.+.-+..
T Consensus       142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~  221 (571)
T KOG1237|consen  142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV  221 (571)
T ss_pred             CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc
Confidence                      2356677778888999999999999999998   2 22  236788999999999999888888887889


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 013356          234 NWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       234 ~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      +|.+.|.+..+...+..++.+
T Consensus       222 ~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  222 GWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             cceeeccHHHHHHHHHHHHHH
Confidence            999999988877665554443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.28  E-value=0.028  Score=52.69  Aligned_cols=126  Identities=10%  Similarity=0.078  Sum_probs=89.2

Q ss_pred             ccccccccc---CccchhHHHHHHHH-HHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch--------------
Q 013356          106 SGIQGDFKL---NNFQDGVLSSAFMV-GLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS--------------  167 (444)
Q Consensus       106 ~~i~~~~~~---s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------  167 (444)
                      ..+.+.+.+   ++..+.++-+..-+ +..+..++.+++.+++-|.+++-.-+..+....+++++.              
T Consensus        47 R~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~  126 (509)
T COG3202          47 RSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEF  126 (509)
T ss_pred             HHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHH
Confidence            445555544   45567777777777 677889999999999999999888877777777776652              


Q ss_pred             -h-----------------hHHHHHHHHHHhHhhhhhhhh-ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356          168 -F-----------------DFWSIAICRMLVGVGEASFIS-LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (444)
Q Consensus       168 -~-----------------s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~  228 (444)
                       .                 +.|..-+.-++.-+-.+...+ .-.....|.+..++-.|..++++.+.+++..++..+..+
T Consensus       127 ~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~  206 (509)
T COG3202         127 SRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW  206 (509)
T ss_pred             HHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             1                 113333333333333333333 446677888888999999999999999999998888887


Q ss_pred             hhc
Q 013356          229 VGS  231 (444)
Q Consensus       229 l~~  231 (444)
                      +..
T Consensus       207 ~~k  209 (509)
T COG3202         207 LSK  209 (509)
T ss_pred             Hhh
Confidence            765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0026  Score=59.62  Aligned_cols=143  Identities=16%  Similarity=0.220  Sum_probs=107.3

Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhhhhhcCCc---c----hhHHHHHHHHHHHHhhhch----------hhHHHHHHHHHH
Q 013356          117 FQDGVLSSAFMVGLLVASPIFASLAKSHNPF---R----LIGVGLSVWTFATAGCGSS----------FDFWSIAICRML  179 (444)
Q Consensus       117 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr---~----~l~~~~~~~~~~~~~~~~~----------~s~~~l~~~r~l  179 (444)
                      -..+|..+...+.-.+.+++..++-.+.+++   +    -+-+++.+.+.+.++....          .|.++++..-++
T Consensus       324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l  403 (498)
T COG3104         324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL  403 (498)
T ss_pred             cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence            3457888888888889998888888885554   2    1345666666665554433          368889999999


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH------hhcccchhHHHHHHHHHHHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV------VGSHLNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~------l~~~~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      +++|.=...|++.+++....|++-.+.+++.+-.....|..++..+++.      ..+...-...|+..+...++..+..
T Consensus       404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888888887777763      2233445667777777777776665


Q ss_pred             HhhccC
Q 013356          254 FVIKPL  259 (444)
Q Consensus       254 ~~~~p~  259 (444)
                      +...|.
T Consensus       484 ~~~~~~  489 (498)
T COG3104         484 LLLSPK  489 (498)
T ss_pred             HHhhHH
Confidence            554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.99  E-value=0.0023  Score=44.15  Aligned_cols=62  Identities=15%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      .-..+++.+.....+.-++|.|+++ .|+++.+. .+.++..+..+++.++.|.++||.++++.
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~   67 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV   67 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            3455677777888888899999997 78988777 66677778999999999999999999853

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.98  E-value=0.003  Score=60.28  Aligned_cols=121  Identities=12%  Similarity=-0.009  Sum_probs=96.6

Q ss_pred             cCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhc----------hhhHHHHHHHHHHhHhh
Q 013356          114 LNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGS----------SFDFWSIAICRMLVGVG  183 (444)
Q Consensus       114 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~s~~~l~~~r~l~G~~  183 (444)
                      .|+...|.+..+..++..+|..+..++.-+..-|+++..+.++.++..+.-..          .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            78888888888888999999999988888888889888888887776664221          12223334455667777


Q ss_pred             hhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc
Q 013356          184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN  234 (444)
Q Consensus       184 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  234 (444)
                      .+..+-....+++|..|+..-|...+++....++|..++..++..+.+.++
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            777778888999999999999999999999999999999999988765443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.96  E-value=0.0038  Score=53.40  Aligned_cols=53  Identities=13%  Similarity=0.130  Sum_probs=33.5

Q ss_pred             CchhHHHHHHhhhcccccchhhhHHHHhhc-------ccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          202 PQKTAWLSMFYMCIPTGVALGYVYGGVVGS-------HLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       202 ~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      |+|+....+...++++|.++....  ++..       .-+|++.+.+.+++.++-+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566666666677777776665432  2211       1359999999988876666555444

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.82  E-value=0.0034  Score=59.31  Aligned_cols=84  Identities=11%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             HHHHHHHH-HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356          170 FWSIAICR-MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  248 (444)
Q Consensus       170 ~~~l~~~r-~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~  248 (444)
                      .+.+++.. ++.|++.-.......++-+|...|++++.+.++++.....+..++|++.......+|.|+.+.+.+...++
T Consensus       387 ~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  387 LILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLV  466 (488)
T ss_pred             hhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHH
Confidence            34445543 45677777677778889999999999999999999999999999999998888888888887777666554


Q ss_pred             HHHHH
Q 013356          249 FAVLA  253 (444)
Q Consensus       249 ~~~~~  253 (444)
                      ...++
T Consensus       467 ~~~l~  471 (488)
T KOG2325|consen  467 VAALW  471 (488)
T ss_pred             HHHHH
Confidence            44433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.70  E-value=0.0035  Score=57.90  Aligned_cols=150  Identities=9%  Similarity=-0.073  Sum_probs=90.2

Q ss_pred             cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcC-CcchhHHHHHHHHHHHHhhh----chhhHHHHHHHHHHhHhhh
Q 013356          110 GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHN-PFRLIGVGLSVWTFATAGCG----SSFDFWSIAICRMLVGVGE  184 (444)
Q Consensus       110 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~----~~~s~~~l~~~r~l~G~~~  184 (444)
                      +.-|.+....|++.....++..+++...|.+.||.. -|.++.+......++.....    ...+.+.++....+.|.+.
T Consensus       294 ~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~  373 (480)
T KOG2563|consen  294 CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFG  373 (480)
T ss_pred             ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhh
Confidence            334555578899999999999999999999999986 45555555555555532221    1223445666777888888


Q ss_pred             hhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc---hhHHHH-HHHHHHHHHHHHHHhhccC
Q 013356          185 ASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN---WRYAFW-GEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       185 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~---wr~~f~-~~~~~~~~~~~~~~~~~p~  259 (444)
                      ...+|+..-+-.|..-|..-+.-.|+......+=..+-..+-+...+..+   |.++.- ......++..++..++.|+
T Consensus       374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            88999999998887655544554555544433322333333344444333   344332 2333334444445555444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.14  E-value=0.3  Score=46.53  Aligned_cols=52  Identities=12%  Similarity=-0.008  Sum_probs=35.8

Q ss_pred             hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhH
Q 013356          169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVY  225 (444)
Q Consensus       169 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l  225 (444)
                      .++..++.-++.|++.+........+.+. +|++    .++.+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHH
Confidence            46677778888999998888888887774 5633    4555666666666555543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.10  E-value=0.071  Score=50.74  Aligned_cols=62  Identities=16%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356          168 FDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (444)
Q Consensus       168 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  229 (444)
                      ++-+..++..++.|+..|-..+.+..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667778899999999999999999999999999999999999999999999888776443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.05  E-value=0.036  Score=52.27  Aligned_cols=122  Identities=14%  Similarity=-0.040  Sum_probs=89.7

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHH------HHHhhhchh----hHHHHHHHH
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF------ATAGCGSSF----DFWSIAICR  177 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~------~~~~~~~~~----s~~~l~~~r  177 (444)
                      +...-|+++..+|..-+...+....+.+...++.+|+|..+.=+++...-..      ..+...-.+    +...++.+-
T Consensus       284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi  363 (432)
T PF06963_consen  284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGI  363 (432)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Confidence            3344499999999999999999999999999999999988876666543332      222222222    444555555


Q ss_pred             HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (444)
Q Consensus       178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  229 (444)
                      .+.=+|.=++--...-++.|..|+++||...|......++-.++-..++-.+
T Consensus       364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  364 ALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5555555566777788999999999999999999988888777766555433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.97  E-value=0.0019  Score=63.11  Aligned_cols=127  Identities=12%  Similarity=0.057  Sum_probs=0.0

Q ss_pred             cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhhh---c-------------
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGCG---S-------------  166 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~---~-------------  166 (444)
                      ..++.+|++++++.+++.++..+ +.++|.+++|++..|+.  .|..+....+...++.++..   +             
T Consensus       330 KylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~  409 (539)
T PF03137_consen  330 KYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTV  409 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecC
Confidence            56788999999999998876666 66789999999999884  55555555444444443311   0             


Q ss_pred             --------------------------------------hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHH
Q 013356          167 --------------------------------------SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWL  208 (444)
Q Consensus       167 --------------------------------------~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~  208 (444)
                                                            .+.+..+++..++.-+..+...+.....+-+.+++++|..++
T Consensus       410 ~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~Al  489 (539)
T PF03137_consen  410 PYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFAL  489 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhh
Confidence                                                  012334555555555555556666666677889999999999


Q ss_pred             HHHhhhcc-cccchhhhHHHHhhcc
Q 013356          209 SMFYMCIP-TGVALGYVYGGVVGSH  232 (444)
Q Consensus       209 ~~~~~~~~-~G~~~~~~l~~~l~~~  232 (444)
                      |+...... +|.+-||++-|.+.|.
T Consensus       490 Gv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  490 GVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -------------------------
T ss_pred             hHHHHHHHhhcCcchHHHHhHHHhh
Confidence            99976664 4788899999988874

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=95.95  E-value=0.3  Score=43.09  Aligned_cols=130  Identities=8%  Similarity=-0.105  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchh
Q 013356          126 FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT  205 (444)
Q Consensus       126 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~  205 (444)
                      -.+-..+.-+....+.||+---.=..+..++.+.+.++.++++|.++=+++-.+..++.|.....-..+-+. ++    .
T Consensus        71 DilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y~----~  145 (409)
T KOG3880|consen   71 DILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-YP----S  145 (409)
T ss_pred             hhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-CC----C
Confidence            334445556666677788654333456777888889999999999999999999999888655544444333 33    2


Q ss_pred             HHHHHHhhhcccccchhhhHHHHhhc--ccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          206 AWLSMFYMCIPTGVALGYVYGGVVGS--HLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       206 ~~~~~~~~~~~~G~~~~~~l~~~l~~--~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      ...+.+..+.+.++++|..--..+.+  ..+-|...++...+.++.+...++.++++
T Consensus       146 ~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p  202 (409)
T KOG3880|consen  146 IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP  202 (409)
T ss_pred             ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence            34555666666666776654444444  24568888888877777777777776553

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.90  E-value=0.056  Score=50.43  Aligned_cols=124  Identities=8%  Similarity=0.001  Sum_probs=75.9

Q ss_pred             ccCccchhHHHHHHHHHHHHHhhhhhhhhhhc----CCcchhHHHHHHHHHHHH-------hh-hchhhHHHHHHHHHHh
Q 013356          113 KLNNFQDGVLSSAFMVGLLVASPIFASLAKSH----NPFRLIGVGLSVWTFATA-------GC-GSSFDFWSIAICRMLV  180 (444)
Q Consensus       113 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~l~~~~~~~~~~~~-------~~-~~~~s~~~l~~~r~l~  180 (444)
                      |.+..+.-++..++..+..+|.+++|.++||+    .+-....+..+..+.+..       +. .+..+...+.+.-++.
T Consensus       279 ~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~  358 (493)
T KOG1330|consen  279 GFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLV  358 (493)
T ss_pred             CCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34555556677888889999999999999993    221222222222222221       11 1223333344445556


Q ss_pred             Hhhhhh-hhhccHHHhhhcCCCCchhHHHHHHhhhcc-cccchhhhHHHHhhcc-cchh
Q 013356          181 GVGEAS-FISLAAPFIDDNAPVPQKTAWLSMFYMCIP-TGVALGYVYGGVVGSH-LNWR  236 (444)
Q Consensus       181 G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~~-~~wr  236 (444)
                      |.-... .+....-+..|.+|+++|..+.++.....- .|..-+|.+-|.+.++ .||+
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            655444 344555667899999999999998876554 4666666577888765 4666

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.81  E-value=0.19  Score=47.63  Aligned_cols=104  Identities=15%  Similarity=0.213  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhhhhhhhhh---hcCCcchhHHHHHHHHHHHHhhhch------------------hhHHHHHHHHHHhHh
Q 013356          124 SAFMVGLLVASPIFASLAK---SHNPFRLIGVGLSVWTFATAGCGSS------------------FDFWSIAICRMLVGV  182 (444)
Q Consensus       124 s~~~l~~~~~~~~~g~l~d---r~Grr~~l~~~~~~~~~~~~~~~~~------------------~s~~~l~~~r~l~G~  182 (444)
                      -...+|..+++.+.+.+.+   ++||++.+.++.++..++.++.-..                  +++...++.-++.|+
T Consensus       286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~  365 (461)
T KOG3098|consen  286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF  365 (461)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence            3444555556666777764   5799999999999988888776442                  356677888899999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~  228 (444)
                      +-+...+....++++.+| ++|..+.++...-..++..++......
T Consensus       366 ~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  366 GDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999999994 889999998888888877765554443

>TIGR00806 rfc RFC reduced folate carrier

Probab=95.51  E-value=0.085  Score=50.06  Aligned_cols=76  Identities=7%  Similarity=-0.057  Sum_probs=54.2

Q ss_pred             cccccccCCcch-h-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 013356          356 AGYNIYHMSNAD-M-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVG  433 (444)
Q Consensus       356 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (444)
                      ++.+.+|++..+ . .+...+..+..+..+.+|++.||+|.|     +++..+.+.-.+..++..+.++...+.++-++.
T Consensus        51 ~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K-----~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~ll  125 (511)
T TIGR00806        51 YLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK-----PVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFY  125 (511)
T ss_pred             HHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555568999877 5 666777789999999999999999998     556666666666666666665655554444444


Q ss_pred             HHH
Q 013356          434 ELL  436 (444)
Q Consensus       434 ~~~  436 (444)
                      |.+
T Consensus       126 Gva  128 (511)
T TIGR00806       126 SVT  128 (511)
T ss_pred             HHH
Confidence            433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.10  E-value=0.11  Score=48.31  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356          119 DGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  198 (444)
                      -.|-..++.+...+.+....++.||+|-|+.++.+...+.++..+.+..++.+.....|-..|+-.+....+-...++++
T Consensus       334 G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y  413 (498)
T KOG0637|consen  334 GCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALY  413 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHH
Confidence            34556677888889999999999999988888888888899999999999999999999999976666666665555544


Q ss_pred             CC-----------------------CCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 013356          199 AP-----------------------VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPFA  250 (444)
Q Consensus       199 ~~-----------------------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~  250 (444)
                      .-                       ...+|...|+.+....+.+++.....|.+.+.+| =+.+-.+.+..++...
T Consensus       414 ~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~  489 (498)
T KOG0637|consen  414 AILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG  489 (498)
T ss_pred             HHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence            21                       1235777788888888888887777777766554 3444444444444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=94.84  E-value=0.068  Score=41.48  Aligned_cols=59  Identities=12%  Similarity=0.077  Sum_probs=35.7

Q ss_pred             hhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 013356          373 VTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELL  436 (444)
Q Consensus       373 ~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (444)
                      ...++..++.+..+++.||++||     +.+..+.....+..+.....++.+.......+.+.+
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   64 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRK-----PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG   64 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34567788899999999999988     444444444444444444445555444444444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.53  E-value=0.092  Score=52.33  Aligned_cols=126  Identities=12%  Similarity=-0.030  Sum_probs=88.3

Q ss_pred             cccccccccCccchhHHHHHHHH-HHHHHhhhhhhhhhhcC--CcchhHHHHHHHHHHHHhh---hc-------------
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMV-GLLVASPIFASLAKSHN--PFRLIGVGLSVWTFATAGC---GS-------------  166 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~---~~-------------  166 (444)
                      ..++++|+.+.+.++.+.+...+ +.++|.+++|++..|+-  .|.+..+.++...+..+..   .+             
T Consensus       417 KyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~  496 (735)
T KOG3626|consen  417 KYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTN  496 (735)
T ss_pred             HHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceec
Confidence            56778999999999998865555 45678899999999874  4555544444444443331   11             


Q ss_pred             ------------------------------------------------------------------hh------------
Q 013356          167 ------------------------------------------------------------------SF------------  168 (444)
Q Consensus       167 ------------------------------------------------------------------~~------------  168 (444)
                                                                                        .+            
T Consensus       497 ~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G  576 (735)
T KOG3626|consen  497 SYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKG  576 (735)
T ss_pred             CCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecC
Confidence                                                                              00            


Q ss_pred             --------hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcc-cccchhhhHHHHhhc
Q 013356          169 --------DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIP-TGVALGYVYGGVVGS  231 (444)
Q Consensus       169 --------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~G~~~~~~l~~~l~~  231 (444)
                              .+..+++..++.-+..+...+....++-+.+++++|..++|+..+... +|.+-+|++-|++.|
T Consensus       577 ~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  577 YCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence                    123345555555555555666777788889999999999999987765 488999999999987

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.08  E-value=2  Score=38.49  Aligned_cols=72  Identities=6%  Similarity=0.108  Sum_probs=55.7

Q ss_pred             HHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCC
Q 013356          128 VGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAP  200 (444)
Q Consensus       128 l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~  200 (444)
                      +.....+++.+.+..++|-|+.+.++...+... +..-+-+.+..++-+-...|++.+..+..--+|+++...
T Consensus        69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            334455566668899999999999888877653 333445788899999999999999999988888877654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.92  E-value=0.15  Score=35.66  Aligned_cols=75  Identities=16%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             HHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 013356          344 FVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSS  422 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (444)
                      .+-+.+.-.+|...++ .+++..+. .+.+...++..+|.+...++.++..++     ..+..+.+...+..+.....++
T Consensus         6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR-----RLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence            3445556677777766 68887666 777777788888888888887774444     4455666666666666655555


Q ss_pred             HH
Q 013356          423 LY  424 (444)
Q Consensus       423 ~~  424 (444)
                      .+
T Consensus        80 ~~   81 (85)
T PF06779_consen   80 FW   81 (85)
T ss_pred             hH
Confidence            44

Note that many members are hypothetical proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.39  E-value=0.3  Score=45.59  Aligned_cols=97  Identities=8%  Similarity=-0.022  Sum_probs=70.2

Q ss_pred             CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHH--HHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccH
Q 013356          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGV--GLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAA  192 (444)
Q Consensus       115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~--~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~  192 (444)
                      +...-|.+-++..+..+++++..|++..++.+..-+.+  ..++.+...+++++.+|.|..+++-++.+.......+...
T Consensus       283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~  362 (412)
T PF01770_consen  283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS  362 (412)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456888888999999999999999777776444443  3444555666778889999999998888887777777777


Q ss_pred             HHhhhcCCCCchhHHHHHH
Q 013356          193 PFIDDNAPVPQKTAWLSMF  211 (444)
Q Consensus       193 ~~i~~~~~~~~r~~~~~~~  211 (444)
                      .-++.....+.-|..+|+.
T Consensus       363 ~qIA~~l~~e~yaLVFGiN  381 (412)
T PF01770_consen  363 FQIAKNLSEERYALVFGIN  381 (412)
T ss_pred             HHHHHhccccceeeeeeeH
Confidence            7777766655555544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.26  E-value=2.6  Score=39.24  Aligned_cols=35  Identities=14%  Similarity=0.034  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCch
Q 013356          169 DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQK  204 (444)
Q Consensus       169 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r  204 (444)
                      .+...++.-.+.|++.|..........++ +|++.-
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt  150 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT  150 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence            45666777788888888776666666665 454443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.95  E-value=0.1  Score=52.44  Aligned_cols=57  Identities=7%  Similarity=0.118  Sum_probs=40.7

Q ss_pred             cccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356          356 AGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (444)
Q Consensus       356 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (444)
                      -+++.++++..+. .+.+...++..++.++.+++.||.+|++     ++..+.++.+++.++.
T Consensus        58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-----~i~~g~ll~~lg~ll~  115 (633)
T TIGR00805        58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-----VIGIGCAIMGLGSFLL  115 (633)
T ss_pred             hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcce-----EEEecHHHHHHHHHHH
Confidence            4455688887666 6667777899999999999999999984     3444555544444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.57  E-value=0.033  Score=50.55  Aligned_cols=107  Identities=14%  Similarity=0.062  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHH--HHHHHHHHHhhh----------chhhHHHHHHHHHHhHhhhhhhh
Q 013356          122 LSSAFMVGLLVASPIFASLAKS-HNPFRLIGVG--LSVWTFATAGCG----------SSFDFWSIAICRMLVGVGEASFI  188 (444)
Q Consensus       122 ~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~~----------~~~s~~~l~~~r~l~G~~~g~~~  188 (444)
                      ...+|.++-.+|....++.-=+ -.+|++...+  =+++....+++.          +.+|-+.+++.-++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4557778888888877653211 1344443321  122222222221          23455677888899999999999


Q ss_pred             hccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356          189 SLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (444)
Q Consensus       189 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~  228 (444)
                      +....+..+..++++|..+..+...+..+|..+|..++-.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.80  E-value=2.6  Score=36.71  Aligned_cols=135  Identities=15%  Similarity=0.044  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhcCCc--chhHHHHHHHHHHHHhhhc----hh---hHHHHHHHHHHhHhhhhhhhh
Q 013356          119 DGVLSSAFMVGLLVASPIFASLAKSHNPF--RLIGVGLSVWTFATAGCGS----SF---DFWSIAICRMLVGVGEASFIS  189 (444)
Q Consensus       119 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~----~~---s~~~l~~~r~l~G~~~g~~~~  189 (444)
                      .|.+.+.+++...+|+-+..++..|-..|  ..+.+..++.++...+...    ++   +...=+++-.+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            58899999999999999988887765443  3455555555444443322    22   122224555566677889999


Q ss_pred             ccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 013356          190 LAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       190 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      ....+=+++.|++.|...+.++..-.++=..++-..-..-....+-|..|-++.+...+..+..
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence            9999999999999999999988766555333322110000011356788888887766654443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.50  E-value=1.1  Score=41.72  Aligned_cols=110  Identities=18%  Similarity=0.097  Sum_probs=76.6

Q ss_pred             cchhHHHHH-HHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhh---------hchhhHHHHHHHHHHhHhhhhh
Q 013356          117 FQDGVLSSA-FMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC---------GSSFDFWSIAICRMLVGVGEAS  186 (444)
Q Consensus       117 ~~~~~~~s~-~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---------~~~~s~~~l~~~r~l~G~~~g~  186 (444)
                      ...-.+..+ +.+.-.+|.+.+.++-+.= ||+. .+..++-.+..-+.         .+-.+-+.++..-.+.|+..|-
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWPD-PRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCCC-Ccee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            334445555 7788888866666655543 3333 33332222222222         2345677888899999999999


Q ss_pred             hhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHH
Q 013356          187 FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGV  228 (444)
Q Consensus       187 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~  228 (444)
                      ..+....+..+-++++++..+..+.......|..+|..++..
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999989888888888888776644

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.06  E-value=2  Score=39.24  Aligned_cols=64  Identities=20%  Similarity=0.166  Sum_probs=39.3

Q ss_pred             cccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 013356          360 IYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLAL  429 (444)
Q Consensus       360 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (444)
                      .+|++..+. .+.....+...+...+.|.+.||+|||     +..+..+++-.+.++.-.. ++.+.+++.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk-----~~cl~~cily~~scl~k~~-~~~~~L~~G  127 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK-----KACLLFCILYSLSCLTKHS-SNYPVLLLG  127 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-----HHHHHHHHHHHHHHHHHhc-cccHHHHHH
Confidence            477776555 333444566777778899999999998     4455555555555543332 334444433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.96  E-value=5.2  Score=38.35  Aligned_cols=64  Identities=6%  Similarity=0.002  Sum_probs=50.8

Q ss_pred             HHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchh
Q 013356          173 IAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWR  236 (444)
Q Consensus       173 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr  236 (444)
                      +++.-++..+.....+....++-+.+.+|.-=|.+|.+.+...++|+---..+.-++.|++.++
T Consensus       408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            3445677777778888889999999999999999999999999999876666666666655443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=85.44  E-value=2.5  Score=36.81  Aligned_cols=66  Identities=17%  Similarity=0.265  Sum_probs=43.9

Q ss_pred             HHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 013356          345 VIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTA  417 (444)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (444)
                      ..|.+..|.|.+- +..|++..+. .++....++..+| +..|.+.|+.|.+     ..+.++.+....+....
T Consensus        17 t~Y~Fs~yS~~Lk-~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~-----~~l~iG~~~~~~GY~~~   83 (250)
T PF06813_consen   17 TTYTFSAYSPQLK-SRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPW-----VVLLIGAVLGFVGYGLL   83 (250)
T ss_pred             cccchhhhhHHHH-HHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchH-----HHHHHHHHHHHHHHHHH
Confidence            4556666666654 4588887777 5555556776665 8889999999987     44555555555544433

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=84.93  E-value=12  Score=31.68  Aligned_cols=42  Identities=12%  Similarity=0.161  Sum_probs=23.9

Q ss_pred             hcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHH
Q 013356          197 DNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYA  238 (444)
Q Consensus       197 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~  238 (444)
                      |+...+++.+.-.......-++..+|..+++++.+..+.+..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~~al  194 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLGFWAL  194 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            333334443344445555556677777778788777665333

The function of this family is unknown although a few members are thought to be membrane proteins.

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.65  E-value=2.4  Score=37.72  Aligned_cols=115  Identities=10%  Similarity=0.056  Sum_probs=78.6

Q ss_pred             cccccC-ccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcc---h---hHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh
Q 013356          110 GDFKLN-NFQDGVLSSAFMVGLLVASPIFASLAKSHNPFR---L---IGVGLSVWTFATAGCGSSFDFWSIAICRMLVGV  182 (444)
Q Consensus       110 ~~~~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~---~---l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~  182 (444)
                      +.+.++ .+|.-|....|.+|-.+..     =+-++=+-+   .   +..-.+++.+.-.+..+.++++..++.-+..|+
T Consensus       280 ~g~sls~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGL  354 (409)
T KOG3880|consen  280 HGFSLSKDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGL  354 (409)
T ss_pred             cCCccchhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            334443 3467888888877644322     111211111   1   122233344445566788999999999999999


Q ss_pred             hhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHh
Q 013356          183 GEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVV  229 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  229 (444)
                      -.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus       355 lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  355 LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            88988888877787778889999999999999999888877766444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=83.56  E-value=14  Score=35.67  Aligned_cols=72  Identities=14%  Similarity=0.092  Sum_probs=54.3

Q ss_pred             HHHhHhhhhhhhhccHHHhhhcCC-CCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHH
Q 013356          177 RMLVGVGEASFISLAAPFIDDNAP-VPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLP  248 (444)
Q Consensus       177 r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~  248 (444)
                      -++.|+.....+..--..+.+.+| +++|...+|-++...++..++..++++.+.+.+||+....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            344566666677667777888877 457889999998888888877777778899999999887766555444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=83.49  E-value=16  Score=35.54  Aligned_cols=73  Identities=12%  Similarity=0.108  Sum_probs=50.9

Q ss_pred             HHhHhhhhhhhhccHHHhhhcCCC-CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHH
Q 013356          178 MLVGVGEASFISLAAPFIDDNAPV-PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFA  250 (444)
Q Consensus       178 ~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~  250 (444)
                      +..|+........--..+.+.+|. +++...+|-++...++-..+-..+++.+.+.+||+..-.+.=+..++..
T Consensus       290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~  363 (491)
T PF03219_consen  290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG  363 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence            445566666666666667777774 5567778888777777666666888888999999988776644444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	444
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-04
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	8e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 51/410 (12%), Positives = 109/410 (26%), Gaps = 57/410 (13%)

Query: 40  LAEAEMATRSLSEDSPPTPSWFTPKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDK 99
              A    R  + +  PT      +  L IF       Y+ R   A              
Sbjct: 4   FKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGY-AAYYLVRKNFA-------------- 48

Query: 100 GICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF 159
               +   +  +   +    G   S   +    +  I  S++   NP   +  GL +   
Sbjct: 49  ---LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104

Query: 160 ATAGCG----SSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCI 215
                G    ++     + +   L G  +          +       ++   +S++    
Sbjct: 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH 164

Query: 216 PTGVALGY-VYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI--KPLQLKGFAPAESGKA 272
             G  +   ++   +    +W  A +  A   +  A+ AF +     Q  G  P E  K 
Sbjct: 165 NVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224

Query: 273 QVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVY 332
                 +E +E               A +  ++ +  ++ L                   
Sbjct: 225 DYPDDYNEKAEQ-----------ELTAKQIFMQYVLPNKLL------------------- 254

Query: 333 VVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADMMFGGVTI-VCGIVGTISGGFILDQ 391
               +  +    +      W P     + H +     +        GI GT+  G++ D+
Sbjct: 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 314

Query: 392 MGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFLALFTVGELLVFATQ 441
           +      A  +        A          +    +    V   L++   
Sbjct: 315 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV 364

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 6e-09
 Identities = 56/392 (14%), Positives = 106/392 (27%), Gaps = 128/392 (32%)

Query: 7   NRSDDVVDVDQN----SQPNLPIQQSKSQSLSHRPPPLAEAEMATRSLSEDSPPTPSWFT 62
           N  + V+++ Q       PN   +   S ++  R   +   +   R L +  P       
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKP------Y 243

Query: 63  PKRLLVIFCVINMLNYV-DRGAIASNGVNGSQR---TCDDKGICTS-GSGIQGDFKLNNF 117
              LLV       L  V +  A   N  N S +   T   K +     +       L++ 
Sbjct: 244 ENCLLV-------LLNVQNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 118 QDGVLSSAFMVGLL--VASPIFASL---AKSHNPFR--LIGVGLSVWTFATAGCGSSFDF 170
               L+   +  LL          L     + NP R  +I   +           +++D 
Sbjct: 295 SMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-------ATWDN 346

Query: 171 WSIAICRMLVGVGEAS------------FISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG 218
           W    C  L  + E+S            F  L+  F   +A +P          + +   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-F-PPSAHIPTIL-------LSL--- 394

Query: 219 VALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASV 278
                                W +    +  + +  V+  L        +  K       
Sbjct: 395 --------------------IWFD----VIKSDVMVVVNKLHKYSLV-EKQPK------- 422

Query: 279 SEGSEASNLNDHVSEDISDQASERSI--KSIGESRFLNQLSQFSQDTKVLLQEKVYVVNV 336
                  ++   +  ++  +        +SI +    N    F  D  +           
Sbjct: 423 ---ESTISIPS-IYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLD------ 470

Query: 337 LGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM 368
             Y         YS+ G       +H+ N + 
Sbjct: 471 -QYF--------YSHIG-------HHLKNIEH 486

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKT-- 205
             + +  ++ +    G   +     + I + L        +     +I     V      
Sbjct: 290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349

Query: 206 -AWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGF 264
                 F+  +   +    V  G +   + ++ A+    ++ L F +++       L G 
Sbjct: 350 YLVCFCFFKQL--AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT----LSGP 403

Query: 265 APAESGKAQV 274
            P    + QV
Sbjct: 404 GPLSLLRRQV 413

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 4/154 (2%)

Query: 124 SAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVG 183
            A+++   V+   +  ++       +I VG+S++  AT    ++     +     + G+G
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMG 101

Query: 184 EASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA 243
                 +A     D     Q     S+  M I     L  + GG++ +  NWR  +    
Sbjct: 102 TGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL--- 158

Query: 244 ILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVAS 277
             +L             +    P ++ + +++ S
Sbjct: 159 -FLLVLCAGVTFSMARWMPETRPVDAPRTRLLTS 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	444
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.41
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.39
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.24
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.05
2xut_A	524	Proton/peptide symporter family protein; transport	98.86

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=1e-33  Score=269.89  Aligned_cols=296  Identities=18%  Similarity=0.218  Sum_probs=236.5

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      ++.+..+++..+..+++....+..                 +|.+.+++|++..+.+++.+.+.++..++++++|+++||
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr   87 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDIL-----------------LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK   87 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            445666677777777776666643                 488999999999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhh---hchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccc
Q 013356          144 HNPFRLIGVGLSVWTFATAGC---GSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVA  220 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  220 (444)
                      +|||++++++.++.+++.++.   +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+
T Consensus        88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  167 (438)
T 3o7q_A           88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI  167 (438)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   88999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhh-ccCcccCCCCCccccch
Q 013356          221 LGYVYGGVVG-SHLN-------------------------WRYAFWGEAILMLPFAVLAFVI-KPLQLKGFAPAESGKAQ  273 (444)
Q Consensus       221 ~~~~l~~~l~-~~~~-------------------------wr~~f~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~  273 (444)
                      +++.+++.+. +..+                         ||+.|++.+++.++..++.++. .||++++..++++.   
T Consensus       168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---  244 (438)
T 3o7q_A          168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ---  244 (438)
T ss_dssp             HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST---
T ss_pred             HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc---
Confidence            9999999988 5554                         9999988887766665554443 23322110000000   


Q ss_pred             hhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhc
Q 013356          274 VVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWG  353 (444)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (444)
                                                                 .+..+++++++++|.++...+..++.......+..+.
T Consensus       245 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (438)
T 3o7q_A          245 -------------------------------------------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL  281 (438)
T ss_dssp             -------------------------------------------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                       0012234567889999999998888888888899999


Q ss_pred             ccc-ccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 013356          354 PKA-GYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAFCLSSLYGFL  427 (444)
Q Consensus       354 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (444)
                      |.| +++.+|.+.... .......++.+++.++.+++.||+++|     +.+..+.++..+.++.....++.+..+
T Consensus       282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T 3o7q_A          282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH-----KVLAAYALIAMALCLISAFAGGHVGLI  352 (438)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            999 888778887665 556666788899999999999999988     445555566555555555555544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.5e-33  Score=268.28  Aligned_cols=286  Identities=13%  Similarity=0.056  Sum_probs=230.1

Q ss_pred             hhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhh
Q 013356           64 KRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKS  143 (444)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr  143 (444)
                      ++.+..+++..+..+++...++..                 +|.+.+++ .+..+.|++.+++.++..++++++|+++||
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr   88 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR   88 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            456667777778888777766644                 48899999 999999999999999999999999999999


Q ss_pred             cCCcchhHHHHHHHHHHHHhhhc----hhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccccc
Q 013356          144 HNPFRLIGVGLSVWTFATAGCGS----SFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGV  219 (444)
Q Consensus       144 ~Grr~~l~~~~~~~~~~~~~~~~----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  219 (444)
                      +|||++++++.++.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus        89 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  168 (451)
T 1pw4_A           89 SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG  168 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999    99999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccch
Q 013356          220 ALGYVYGGVVGSHLN-WRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQ  298 (444)
Q Consensus       220 ~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (444)
                      +++|.+++++.+..| ||+.|++.+++.++..++.+++.||++++...++.++....          .   ++      +
T Consensus       169 ~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~------~  229 (451)
T 1pw4_A          169 GIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND----------Y---PD------D  229 (451)
T ss_dssp             TSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-----------------------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc----------c---cc------c
Confidence            999999999888888 99999999998888777777777876544322111100000          0   00      0


Q ss_pred             hhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhccc
Q 013356          299 ASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVC  377 (444)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  377 (444)
                      .++.+++.       ...+  ....+..+++|.++...+..++.....+.+..+.|.|+++.+|.+.... .......++
T Consensus       230 ~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  300 (451)
T 1pw4_A          230 YNEKAEQE-------LTAK--QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA  300 (451)
T ss_dssp             ----------------CCT--HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred             chhhhhcc-------cccc--cchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            00000000       0000  0013466788999999998999989999999999999999888887655 556667788


Q ss_pred             chhhhhhhhhhhhhh--ccc
Q 013356          378 GIVGTISGGFILDQM--GAT  395 (444)
Q Consensus       378 ~~~~~~~~g~l~dr~--~~~  395 (444)
                      .+++.++.+++.||+  ++|
T Consensus       301 ~~~~~~~~g~l~~~~~~~~~  320 (451)
T 1pw4_A          301 GIPGTLLCGWMSDKVFRGNR  320 (451)
T ss_dssp             HHHHHHHHHHHHHHTSTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCc
Confidence            999999999999999  776

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=3.1e-31  Score=247.47  Aligned_cols=261  Identities=14%  Similarity=0.122  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 013356           68 VIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPF  147 (444)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr  147 (444)
                      ..+++..++..++.......                 +|.+.+++|.++.+.+++.+.+.++..++++++|+++||+|||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r   65 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPA-----------------IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR   65 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----------------HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            34455556666665555533                 4889999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHH
Q 013356          148 RLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGG  227 (444)
Q Consensus       148 ~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~  227 (444)
                      +++..+.++.+++.++.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  145 (375)
T 2gfp_A           66 PVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG  145 (375)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcc
Q 013356          228 VVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSI  307 (444)
Q Consensus       228 ~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (444)
                      ++.++.+||+.|++.+++.++..+..++..||++++..+++                                       
T Consensus       146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  186 (375)
T 2gfp_A          146 LLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT---------------------------------------  186 (375)
T ss_dssp             HSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC---------------------------------------
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc---------------------------------------
Confidence            99998899999999988877666545555566433211000                                       


Q ss_pred             cchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhh
Q 013356          308 GESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGG  386 (444)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g  386 (444)
                                +..+++++.+++|.++...+..++.......+..+.|.++++.+|.+.... .......++.+++.++.+
T Consensus       187 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  256 (375)
T 2gfp_A          187 ----------RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG  256 (375)
T ss_dssp             ----------CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ----------cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      001233456778888888888888888899999999999998778776555 455566677788888888


Q ss_pred             hhhhhhcc
Q 013356          387 FILDQMGA  394 (444)
Q Consensus       387 ~l~dr~~~  394 (444)
                      ++.||.++
T Consensus       257 ~l~~r~~~  264 (375)
T 2gfp_A          257 RPNKRFST  264 (375)
T ss_dssp             TTTTHHHH
T ss_pred             HHHHHHHH
Confidence            88888776

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=1.1e-30  Score=252.61  Aligned_cols=297  Identities=14%  Similarity=0.126  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHHHhhccchhhccccCCCccccCCCCcccccccccccccc--------CccchhHHHHHHHHHHHHHhhh
Q 013356           65 RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKL--------NNFQDGVLSSAFMVGLLVASPI  136 (444)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~--------s~~~~~~~~s~~~l~~~~~~~~  136 (444)
                      .+.++.+++.++.++|.+.++.+                 +|.++++++.        +..+.|++.+++.+|..+|+++
T Consensus        12 ~i~~~a~lg~~~~Gyd~~~i~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~   74 (491)
T 4gc0_A           12 SITLVATLGGLLFGYDTAVISGT-----------------VESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL   74 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGT-----------------HHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566778889998888754                 3777776632        3456789999999999999999


Q ss_pred             hhhhhhhcCCcchhHHHHHHHHHHHHhhh------------------chhhHHHHHHHHHHhHhhhhhhhhccHHHhhhc
Q 013356          137 FASLAKSHNPFRLIGVGLSVWTFATAGCG------------------SSFDFWSIAICRMLVGVGEASFISLAAPFIDDN  198 (444)
Q Consensus       137 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  198 (444)
                      +|+++||+|||++++++.+++.+++++++                  +++|+++++++|+++|++.|+..+..+.+++|+
T Consensus        75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~  154 (491)
T 4gc0_A           75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL  154 (491)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999988                  478999999999999999999999999999999


Q ss_pred             CCCCchhHHHHHHhhhcccccchhhhHHHHhhc--------ccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccc
Q 013356          199 APVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS--------HLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESG  270 (444)
Q Consensus       199 ~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~--------~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  270 (444)
                      .|+++|++..++.+.+..+|.++++.++..+..        ..+||+.+.+..++.++..+ ..+..||+|++...+++.
T Consensus       155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~peSp~~L~~~~~~  233 (491)
T 4gc0_A          155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM-LLYTVPESPRWLMSRGKQ  233 (491)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH-HGGGSCCCHHHHHHTTCH
T ss_pred             CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh-hhhcCCCChHHHHHcCch
Confidence            999999999999999999999999988876643        24588888877777665544 445669988775444333


Q ss_pred             cchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchh-hHHHHHHHHHHHHHHH
Q 013356          271 KAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYV-VNVLGYIAYNFVIGAY  349 (444)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  349 (444)
                      ++..+..++...+.         ...++..+..+..       ...+. .......++.+... ......+.+....+.+
T Consensus       234 ~~a~~~l~~~~~~~---------~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (491)
T 4gc0_A          234 EQAEGILRKIMGNT---------LATQAVQEIKHSL-------DHGRK-TGGRLLMFGVGVIVIGVMLSIFQQFVGINVV  296 (491)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHHHHHHHH-------HHHHH-HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHhHHHhcCCc---------hhHHHHHHHHHHH-------Hhhhh-hhhHHHHhcccHHHHHHHHHHHHHHhhhhHH
Confidence            22211111000000         0000000000000       00000 00011122333333 3333444455556666


Q ss_pred             HhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccch
Q 013356          350 SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATIS  397 (444)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~  397 (444)
                      ..|.|.+.+.. +.+.... ....+..+..+++.++++++.||+|||+.
T Consensus       297 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~  344 (491)
T 4gc0_A          297 LYYAPEVFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL  344 (491)
T ss_dssp             HHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH
T ss_pred             HhcchHHHHhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence            77777776653 4433233 44556667888999999999999999843

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=4.8e-28  Score=234.17  Aligned_cols=304  Identities=10%  Similarity=-0.003  Sum_probs=193.8

Q ss_pred             cccCccchhHHHHHHHHHHHHHhhhhhhhhhh-cCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhc
Q 013356          112 FKLNNFQDGVLSSAFMVGLLVASPIFASLAKS-HNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISL  190 (444)
Q Consensus       112 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~  190 (444)
                      +|.+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.+++++++|++.++++|+++|++.+...+.
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  128 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN  128 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence            99999999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             cHHHhhhcCCCCc--hhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCc
Q 013356          191 AAPFIDDNAPVPQ--KTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAE  268 (444)
Q Consensus       191 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  268 (444)
                      ..+++.|++|+++  |+.++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+..++..|+..+...++.
T Consensus       129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (491)
T 4aps_A          129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP  208 (491)
T ss_dssp             HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred             HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence            9999999999988  77888989999999999999999999998999999999887776666555544444332211111


Q ss_pred             cccchhhhccccccccCC------------CCcccCCcccchhhh--hhhhcccchhhhhhhccccccchhcccCcchhh
Q 013356          269 SGKAQVVASVSEGSEASN------------LNDHVSEDISDQASE--RSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVV  334 (444)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (444)
                      +.+...++ .....+...            .......+.......  ...............++.........+....+.
T Consensus       209 ~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (491)
T 4aps_A          209 TDPLAPEE-VKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP  287 (491)
T ss_dssp             SCCCSHHH-HHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred             CCccccch-hHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            11000000 000000000            000000000000000  000000000000000000011111112223344


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356          335 NVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (444)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  413 (444)
                      ..+..+.....+.....++|.+.++..+.+.... .......++.+++.++.+++.||++||+......+..+.++..+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~  367 (491)
T 4aps_A          288 LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLS  367 (491)
T ss_dssp             HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            4445555556666667777888887666663233 445566677888899999999999998554323333444444444


Q ss_pred             HHH
Q 013356          414 CLT  416 (444)
Q Consensus       414 ~~~  416 (444)
                      ++.
T Consensus       368 ~~~  370 (491)
T 4aps_A          368 FLL  370 (491)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.90  E-value=3.8e-24  Score=202.13  Aligned_cols=263  Identities=12%  Similarity=0.035  Sum_probs=166.3

Q ss_pred             ccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHH---HhhhchhhHH-HHHHHHHHhHh
Q 013356          107 GIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFAT---AGCGSSFDFW-SIAICRMLVGV  182 (444)
Q Consensus       107 ~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~s~~-~l~~~r~l~G~  182 (444)
                      .+++++|+|+.+.|++.+.+.++..++++++|+++||+|||++++++.++.+++.   ....+++... .++.++++.|+
T Consensus        33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T 2cfq_A           33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667799999999999999999999999999999999999999999888775532   2223333221 24556777777


Q ss_pred             hhhhhhhccHHHhhhcCCC--CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 013356          183 GEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQ  260 (444)
Q Consensus       183 ~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~~  260 (444)
                      +.+..++.....+.++.++  ++|+...+.......+|..++|.+++++.+ .+||+.|++.+++.++..+..++..||+
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            7666665555555555543  356777888888899999999999999886 5899999987766544433333222332


Q ss_pred             ccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHH
Q 013356          261 LKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYI  340 (444)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (444)
                      ++.. + ++++ .            .   +..           ++        .    ..++.++++++|.++...+..+
T Consensus       192 ~~~~-~-~~~~-~------------~---~~~-----------~~--------~----~~~~~~~~~~~~~~~~~~~~~~  230 (417)
T 2cfq_A          192 PSSA-T-VANA-V------------G---ANH-----------SA--------F----SLKLALELFRQPKLWFLSLYVI  230 (417)
T ss_dssp             SCSS-C-SSSS-S------------S---SCC-----------CC--------C----CHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccc-c-cccc-c------------c---ccc-----------cc--------c----cHHHHHHHhcCCchhhHHHHHH
Confidence            1100 0 0000 0            0   000           00        0    0112345667788777666555


Q ss_pred             HHHHHHHHHHhhccccccccccCC---cchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 013356          341 AYNFVIGAYSYWGPKAGYNIYHMS---NADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLT  416 (444)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  416 (444)
                      .....+..+..+.|.|+.+.++..   .... ....+..++.+++.++.+++.||++||     +.+..+.++.++..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----~~l~~~~~~~~~~~~~  305 (417)
T 2cfq_A          231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVRIIG  305 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHH
Confidence            555555555566777765544321   2122 333444567788899999999999988     3344444444443333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=2.7e-22  Score=195.38  Aligned_cols=150  Identities=14%  Similarity=0.119  Sum_probs=137.2

Q ss_pred             cccccccc------cCccchhHHHHHHHHHHHHHhhhhhhhhhhc-CCcchhHHHHHHHHHHHHhhhchh-hHHHHHHHH
Q 013356          106 SGIQGDFK------LNNFQDGVLSSAFMVGLLVASPIFASLAKSH-NPFRLIGVGLSVWTFATAGCGSSF-DFWSIAICR  177 (444)
Q Consensus       106 ~~i~~~~~------~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-s~~~l~~~r  177 (444)
                      +.+.+++|      .++.+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.++.++++ +++.++++|
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL  116 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            45677888      9999999999999999999999999999999 999999999999999999999999 999999999


Q ss_pred             HHhHhhhhhhhhccHHHhhhcCCCCchhHHHHH---HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 013356          178 MLVGVGEASFISLAAPFIDDNAPVPQKTAWLSM---FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAF  254 (444)
Q Consensus       178 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~  254 (444)
                      ++.|++.+...+...+++.|++|+++|+++.+.   .+.+.++|.+++|.+++.+.+..|||+.|++.+++.++..+..+
T Consensus       117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876666   89999999999999999999889999999998887666555444


Q ss_pred             h
Q 013356          255 V  255 (444)
Q Consensus       255 ~  255 (444)
                      +
T Consensus       197 ~  197 (524)
T 2xut_A          197 L  197 (524)
T ss_dssp             S
T ss_pred             H
Confidence            3

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.58  E-value=1e-14  Score=139.01  Aligned_cols=151  Identities=11%  Similarity=-0.042  Sum_probs=132.9

Q ss_pred             ccc-ccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhc--CCcchhHHHHHHHH-HHHHhhhch--hhHHHHHHHHHH
Q 013356          106 SGI-QGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSH--NPFRLIGVGLSVWT-FATAGCGSS--FDFWSIAICRML  179 (444)
Q Consensus       106 ~~i-~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~s~~~l~~~r~l  179 (444)
                      |.+ ++.+|.++.+.+++.+.+.++..++.++.|++.||+  |||+.+.++.++.. ++.++..+.  .+.+.+.+..++
T Consensus       276 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (451)
T 1pw4_A          276 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV  355 (451)
T ss_dssp             HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence            444 444899999999999999999999999999999999  99999988887776 677776666  478888888899


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhh
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVI  256 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~  256 (444)
                      .|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.++.||+..|++.+++.++..++.++.
T Consensus       356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888899999999999999999999999999 999999999999999999999999988877776665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=9.3e-14  Score=130.88  Aligned_cols=145  Identities=8%  Similarity=0.010  Sum_probs=125.4

Q ss_pred             CccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhhccHHH
Q 013356          115 NNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASFISLAAPF  194 (444)
Q Consensus       115 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~  194 (444)
                      +....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566888888888999999999999999999999999999888888888888888888888888888877777777899


Q ss_pred             hhhcCCCCchhHHHHH-HhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          195 IDDNAPVPQKTAWLSM-FYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       195 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      +.|.+|++.|+.+.++ ++....+|..++|.+++.+.++.|++..|.+.+++.++..++.++..||
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            9999999999999998 4888889999999999999988899999999888877777666655554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.41  E-value=1.5e-12  Score=125.50  Aligned_cols=151  Identities=14%  Similarity=0.054  Sum_probs=124.2

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhH-----HHHHHHHHHHHhhhchh---------hHHHH
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIG-----VGLSVWTFATAGCGSSF---------DFWSI  173 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------s~~~l  173 (444)
                      ..+.++.+..+.+++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..         +.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence            34446666677888899999999999999999999999997765     78888888877777643         77788


Q ss_pred             HHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 013356          174 AICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       174 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      .+.-++.|++.+...+....++.|.+|+++|+.+.++.+....+|..+++.+++.+.+ .++.+.|.+.++++++..++.
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999899999999999999999999999999999999999999988875 467788888888877777766


Q ss_pred             HhhccC
Q 013356          254 FVIKPL  259 (444)
Q Consensus       254 ~~~~p~  259 (444)
                      +++.++
T Consensus       469 ~~~~~~  474 (491)
T 4aps_A          469 VFLSKR  474 (491)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            666554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.39  E-value=3.8e-13  Score=127.54  Aligned_cols=139  Identities=9%  Similarity=-0.124  Sum_probs=120.4

Q ss_pred             cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 013356          108 IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEASF  187 (444)
Q Consensus       108 i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~  187 (444)
                      +++.+|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence            445569999999999999999999999999999999999999999999999999988888887765554 8889999999


Q ss_pred             hhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccc-hhHHHHHHHHHHHHH
Q 013356          188 ISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLN-WRYAFWGEAILMLPF  249 (444)
Q Consensus       188 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-wr~~f~~~~~~~~~~  249 (444)
                      .+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++.
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            999999999999955 888888877 556999999999999999888 999998776554433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.24  E-value=7.6e-11  Score=113.44  Aligned_cols=155  Identities=8%  Similarity=-0.029  Sum_probs=117.2

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhch-----hhHHHHHH-HHHH
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSS-----FDFWSIAI-CRML  179 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~s~~~l~~-~r~l  179 (444)
                      |.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+.. .-+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            66777777777777777778888899999999999999999999999888888777665432     12222222 2222


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhc------ccchhHHHHHHHHHHHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGS------HLNWRYAFWGEAILMLPFAVLA  253 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~------~~~wr~~f~~~~~~~~~~~~~~  253 (444)
                      .+++. ...+....+.+|.+|.+.|+.+.++......+|..+++.+.+.+.+      ..++.+.|++.++++++..+..
T Consensus       381 ~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          381 AAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             HHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            23332 2446678899999999999999999999999998888877665533      3456678888999988888888


Q ss_pred             HhhccCcc
Q 013356          254 FVIKPLQL  261 (444)
Q Consensus       254 ~~~~p~~~  261 (444)
                      ++++||+.
T Consensus       460 ~~~~PETk  467 (491)
T 4gc0_A          460 WKFVPETK  467 (491)
T ss_dssp             HHHCCCCT
T ss_pred             HheecCCC
Confidence            88899964

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.05  E-value=6.1e-11  Score=109.90  Aligned_cols=135  Identities=7%  Similarity=-0.034  Sum_probs=108.9

Q ss_pred             cccc-cccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHH-HHHHHHhhhc----hhhHHHHHHHHHH
Q 013356          106 SGIQ-GDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSV-WTFATAGCGS----SFDFWSIAICRML  179 (444)
Q Consensus       106 ~~i~-~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~----~~s~~~l~~~r~l  179 (444)
                      |.+. +++|.++.+.+++.+...++..++.++.+++.||+|++  +..+..+ ...+......    .++.+.+++..++
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  300 (375)
T 2gfp_A          223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL  300 (375)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence            4454 44899999999999999999999999999999999882  3333333 2222222122    2377778888999


Q ss_pred             hHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHH
Q 013356          180 VGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEA  243 (444)
Q Consensus       180 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~  243 (444)
                      .|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+.+
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999998 899999999999999999999999999988778887777643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.86  E-value=3e-09  Score=103.17  Aligned_cols=142  Identities=13%  Similarity=0.122  Sum_probs=103.8

Q ss_pred             chhHHHHHHHHHHHHHhhhhhhhh----hhcCCc----chhHHHHHHHHHHHHhhhch---------hhHHHHHHHHHHh
Q 013356          118 QDGVLSSAFMVGLLVASPIFASLA----KSHNPF----RLIGVGLSVWTFATAGCGSS---------FDFWSIAICRMLV  180 (444)
Q Consensus       118 ~~~~~~s~~~l~~~~~~~~~g~l~----dr~Grr----~~l~~~~~~~~~~~~~~~~~---------~s~~~l~~~r~l~  180 (444)
                      ..+++.+...++..++.++.+++.    ||.|+|    +.+.++.++.+++.++.++.         .+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            456666666677777777777764    555433    45677888888888877764         3777888889999


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccccchhhhHHHHhhccc--ch---------hHHHHHHHHHHHHH
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVALGYVYGGVVGSHL--NW---------RYAFWGEAILMLPF  249 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~--~w---------r~~f~~~~~~~~~~  249 (444)
                      |++.+...+....++.|.+|+++||+++|+.+....+|..+++.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987642  23         34477777766666


Q ss_pred             HHHHHhhccC
Q 013356          250 AVLAFVIKPL  259 (444)
Q Consensus       250 ~~~~~~~~p~  259 (444)
                      .++.+++.++
T Consensus       496 ~~~~~~~~~~  505 (524)
T 2xut_A          496 AIVFALYARS  505 (524)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHHHHH
Confidence            6555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	444
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	7e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 55.1 bits (131), Expect = 7e-09
 Identities = 37/386 (9%), Positives = 96/386 (24%), Gaps = 52/386 (13%)

Query: 65  RLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSS 124
           ++ +         Y+ R   A                         +   +    G   S
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLV------------------EQGFSRGDLGFALS 66

Query: 125 AFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGC----GSSFDFWSIAICRMLV 180
              +    +  I  S++   NP   +  GL +             ++     + +   L 
Sbjct: 67  GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLC 126

Query: 181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTGVAL-GYVYGGVVGSHLNWRYAF 239
           G  +          +       ++   +S++      G  +   ++   +    +W  A 
Sbjct: 127 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186

Query: 240 WGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQA 299
           +  A   +  A+ AF +                                         + 
Sbjct: 187 YMPAFCAILVALFAFAMMRDT----------------------------PQSCGLPPIEE 218

Query: 300 SERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYN 359
            +         +   +L+      + +L  K+     +  +    +      W P     
Sbjct: 219 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE 278

Query: 360 IYHMSNAD-MMFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAISCLTAF 418
           + H +         +    GI GT+  G++ D++      A  +        A       
Sbjct: 279 VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 338

Query: 419 CLSSLYGFLALFTVGELLVFATQVIL 444
              +    +    V   L++   +++
Sbjct: 339 PAGNPTVDMICMIVIGFLIYGPVMLI 364

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 16/175 (9%), Positives = 47/175 (26%), Gaps = 5/175 (2%)

Query: 101 ICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFA 160
                +      +      G +++   +           +         + +  ++ +  
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302

Query: 161 TAGCGSSFDFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFY-MCIPTGV 219
             G   +     + I + L        +     +I     V        + +       +
Sbjct: 303 IIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362

Query: 220 ALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQV 274
               V  G +   + ++ A+    ++ L F +++       L G  P    + QV
Sbjct: 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT----LSGPGPLSLLRRQV 413

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	444
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.84
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.6
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.48

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-33  Score=267.29  Aligned_cols=290  Identities=12%  Similarity=0.048  Sum_probs=228.4

Q ss_pred             chhHHHHHHHHHHHHhhccchhhccccCCCccccCCCCccccccccccccccCccchhHHHHHHHHHHHHHhhhhhhhhh
Q 013356           63 PKRLLVIFCVINMLNYVDRGAIASNGVNGSQRTCDDKGICTSGSGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAK  142 (444)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d  142 (444)
                      +|.++..++++++..++++..++..                 .|.++ |+|+|.+++|++.+++.+++.++++++|+++|
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D   84 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALA-----------------MPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSD   84 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHH-----------------HHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777788888998888888755                 27665 58999999999999999999999999999999


Q ss_pred             hcCCcchhHHHHHHHHHHHHhhhchh----hHHHHHHHHHHhHhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhcccc
Q 013356          143 SHNPFRLIGVGLSVWTFATAGCGSSF----DFWSIAICRMLVGVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPTG  218 (444)
Q Consensus       143 r~Grr~~l~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  218 (444)
                      |+|||+++.++.++.+++.+++++++    +++.++++|++.|++.|...+....++.|++|+++|++++++.+.+..+|
T Consensus        85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  164 (447)
T d1pw4a_          85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  164 (447)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence            99999999999999999999888764    78899999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhhccCcccCCCCCccccchhhhccccccccCCCCcccCCcccc
Q 013356          219 VALGYVYGGVVGSH-LNWRYAFWGEAILMLPFAVLAFVIKPLQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISD  297 (444)
Q Consensus       219 ~~~~~~l~~~l~~~-~~wr~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (444)
                      .++++.+++.+... .+||+.|++.+++.++..++.+++.++.++....+...+....                   ..+
T Consensus       165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  225 (447)
T d1pw4a_         165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------------------YPD  225 (447)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------------
T ss_pred             hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhh-------------------ccc
Confidence            99999988876654 4799999999998888888777777765543322111110000                   000


Q ss_pred             hhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHHHHHHHHHHHHHHhhccccccccccCCcchh-hhhhhhcc
Q 013356          298 QASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYHMSNADM-MFGGVTIV  376 (444)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  376 (444)
                      ...+..+         ++........+..++++.++......++.....+....+.|.|+.+.++.+.... .......+
T Consensus       226 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (447)
T d1pw4a_         226 DYNEKAE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY  296 (447)
T ss_dssp             -------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHH
T ss_pred             chhhccc---------cccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchh
Confidence            0000000         0000011223456788889988888888888899999999999999888887665 55667778


Q ss_pred             cchhhhhhhhhhhhhhcccchh
Q 013356          377 CGIVGTISGGFILDQMGATISN  398 (444)
Q Consensus       377 ~~~~~~~~~g~l~dr~~~~~~~  398 (444)
                      +.+++.++.|++.||++++...
T Consensus       297 ~~~~~~~~~g~~~~~~~~~~~~  318 (447)
T d1pw4a_         297 AGIPGTLLCGWMSDKVFRGNRG  318 (447)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCHH
T ss_pred             hhhhhhhhhhhhhhhccccccc
Confidence            8899999999999999987654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4e-21  Score=178.30  Aligned_cols=287  Identities=13%  Similarity=0.027  Sum_probs=177.4

Q ss_pred             cc-cccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHH----HHHHHHh
Q 013356          106 SG-IQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSI----AICRMLV  180 (444)
Q Consensus       106 ~~-i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l----~~~r~l~  180 (444)
                      |. +++++|+|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+..+..+....    ++.+.+.
T Consensus        31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (417)
T d1pv7a_          31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG  110 (417)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            44 677899999999999999999999999999999999999999999999999998888887665543    4555666


Q ss_pred             HhhhhhhhhccHHHhhhcCCC--CchhHHHHHHhhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhcc
Q 013356          181 GVGEASFISLAAPFIDDNAPV--PQKTAWLSMFYMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKP  258 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p  258 (444)
                      +.+.+...........+..++  +++....+........|..+++.+++.+.+ .+|+..+........+..++.++..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (417)
T d1pv7a_         111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKT  189 (417)
T ss_dssp             TTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-ccccccccchhhHHHHHHHHHHHHhc
Confidence            666555555555444444332  344556677778888888999999998876 45666666666666666666666666


Q ss_pred             CcccCCCCCccccchhhhccccccccCCCCcccCCcccchhhhhhhhcccchhhhhhhccccccchhcccCcchhhHHHH
Q 013356          259 LQLKGFAPAESGKAQVVASVSEGSEASNLNDHVSEDISDQASERSIKSIGESRFLNQLSQFSQDTKVLLQEKVYVVNVLG  338 (444)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (444)
                      +.++...++++.+....                                         ........+..+++..+.....
T Consensus       190 ~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~  228 (417)
T d1pv7a_         190 DAPSSATVANAVGANHS-----------------------------------------AFSLKLALELFRQPKLWFLSLY  228 (417)
T ss_dssp             CSCSSSCSSHHHHSCCC-----------------------------------------CCCHHHHHHHTTSSHHHHHHHH
T ss_pred             ccccchhhhhhhhhhcc-----------------------------------------cccccccccccccccccchhhh
Confidence            65443222211110000                                         0000011122233333322222


Q ss_pred             HHHHHHHHHHH----HhhccccccccccCCcchh-hhhhhhcccchhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 013356          339 YIAYNFVIGAY----SYWGPKAGYNIYHMSNADM-MFGGVTIVCGIVGTISGGFILDQMGATISNAFKLLSAATFLGAIS  413 (444)
Q Consensus       339 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  413 (444)
                      ...........    ..+.+.+..+ .+.+.... .......++..++..+.+++.||.+++     +.+..+.++..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----~~~~~~~~~~~~~  302 (417)
T d1pv7a_         229 VIGVSCTYDVFDQQFANFFTSFFAT-GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----NALLLAGTIMSVR  302 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhhccccccccccccc-cccchhhhcccccccccccccchhhhhhhhcccccc-----cchhhhHHHHHHh
Confidence            22222222222    2222222222 22222222 444555677888899999999999988     5566666666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 013356          414 CLTAFCLSSLYGFLALFTVGELLVFAT  440 (444)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (444)
                      .+.....++.+..++...+.+++....
T Consensus       303 ~~~~~~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         303 IIGSSFATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccchhhHHHHHHHHHHHHH
Confidence            666666666666666555555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.5e-16  Score=144.41  Aligned_cols=154  Identities=7%  Similarity=-0.018  Sum_probs=138.6

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTFATAGCGSSFDFWSIAICRMLVGVGEA  185 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g  185 (444)
                      +...++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVP  327 (417)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHH
Confidence            33445556677788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHhhhcCCCCchhHHHHHH-hhhcccccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhccC
Q 013356          186 SFISLAAPFIDDNAPVPQKTAWLSMF-YMCIPTGVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIKPL  259 (444)
Q Consensus       186 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~p~  259 (444)
                      ...+....++.|.+|+++|++..++. +....+|..++|.++|++.+++||+..|++.+++.++..++.++.+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999975 566779999999999999999999999999999888888777777654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4.2e-14  Score=132.12  Aligned_cols=152  Identities=11%  Similarity=-0.039  Sum_probs=121.8

Q ss_pred             cccccccccCccchhHHHHHHHHHHHHHhhhhhhhhhhcCCcchhHHHHHHHHH---HHHh--hhchhhHHHHHHHHHHh
Q 013356          106 SGIQGDFKLNNFQDGVLSSAFMVGLLVASPIFASLAKSHNPFRLIGVGLSVWTF---ATAG--CGSSFDFWSIAICRMLV  180 (444)
Q Consensus       106 ~~i~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~--~~~~~s~~~l~~~r~l~  180 (444)
                      ..+.+.++.+..+.++..+.+.++..++.++.|++.||++||+......+...+   +.++  .....+.+..++.-++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            446677889999999999999999999999999999999988754443333222   2222  22345778888888899


Q ss_pred             HhhhhhhhhccHHHhhhcCCCCchhHHHHHHhhhccc-ccchhhhHHHHhhcccchhHHHHHHHHHHHHHHHHHHhhc
Q 013356          181 GVGEASFISLAAPFIDDNAPVPQKTAWLSMFYMCIPT-GVALGYVYGGVVGSHLNWRYAFWGEAILMLPFAVLAFVIK  257 (444)
Q Consensus       181 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~l~~~l~~~~~wr~~f~~~~~~~~~~~~~~~~~~  257 (444)
                      |++.+...+....+..|.+|++.|+.+.|+.+....+ |.+++|.+.+++.+++||+..|++.++..++..++..++.
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888899999999999999999999999887766 5677899999999999999999988777776666555544