Citrus Sinensis ID: 013368
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 444 | 2.2.26 [Sep-21-2011] | |||||||
| Q99JW2 | 408 | Aminoacylase-1 OS=Mus mus | yes | no | 0.882 | 0.960 | 0.458 | 1e-100 | |
| Q6AYS7 | 408 | Aminoacylase-1A OS=Rattus | yes | no | 0.882 | 0.960 | 0.453 | 1e-100 | |
| Q6PTT0 | 408 | Aminoacylase-1B OS=Rattus | yes | no | 0.869 | 0.946 | 0.452 | 1e-100 | |
| Q03154 | 408 | Aminoacylase-1 OS=Homo sa | yes | no | 0.869 | 0.946 | 0.447 | 9e-97 | |
| Q55DP8 | 408 | Aminoacylase-1 OS=Dictyos | yes | no | 0.860 | 0.936 | 0.453 | 2e-96 | |
| Q5RFB0 | 408 | Aminoacylase-1 OS=Pongo a | yes | no | 0.869 | 0.946 | 0.442 | 3e-96 | |
| P37111 | 407 | Aminoacylase-1 OS=Sus scr | yes | no | 0.871 | 0.950 | 0.442 | 5e-96 | |
| Q55DL1 | 485 | Probable carboxypeptidase | no | no | 0.745 | 0.682 | 0.253 | 2e-18 | |
| Q55FR8 | 519 | Probable carboxypeptidase | no | no | 0.256 | 0.219 | 0.404 | 3e-16 | |
| Q08BT9 | 512 | Probable carboxypeptidase | no | no | 0.709 | 0.615 | 0.237 | 6e-14 |
| >sp|Q99JW2|ACY1_MOUSE Aminoacylase-1 OS=Mus musculus GN=Acy1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/408 (45%), Positives = 252/408 (61%), Gaps = 16/408 (3%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY A F+ +A L L Q +E + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQLGLSCQKIEVVPGFVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP LPSILLNSHTDVVP W H PF A DS+G I+ARGSQDMK V +QYLEA+R
Sbjct: 67 GTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K I S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKVISSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR 322
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSASFDFRVAPDVDMKAFEKQLQRWCQEAGE 299
Query: 323 NMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYF 382
+TFEF Q KF P +T TD S+PWW A + N L +PEIFPA+TD+RY
Sbjct: 300 GVTFEFAQ------KFTEPRMTPTDDSDPWWAAFSGACKAMNLTL-EPEIFPAATDSRYI 352
Query: 383 RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
R G+PA+GFSPM TP+LLHDHNE L++ +L+G+DIY ++ A AS
Sbjct: 353 RAVGIPALGFSPMNRTPVLLHDHNERLHEDIFLRGVDIYTGLLSALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Mus musculus (taxid: 10090) EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q6AYS7|ACY1A_RAT Aminoacylase-1A OS=Rattus norvegicus GN=Acy1a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/408 (45%), Positives = 255/408 (62%), Gaps = 16/408 (3%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY +A F+ +A L L Q +E A + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGSAVTFLEERARQLGLSCQKIEVAPGYVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP L SILLNSHTDVVP W H PF A DS+G I+ARG+QDMK V +QYLEA+R
Sbjct: 67 GTNPLLHSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGAQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K + S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWIRVTSTGKPGHASRFIEDTAAEKLHKVVNSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR 322
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEKQLQSWCQEAGE 299
Query: 323 NMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYF 382
+TFEF Q KF P +T TD ++PWW A ++ N L +PEIFPA+TD+RY
Sbjct: 300 GVTFEFAQ------KFTEPRMTPTDDTDPWWAAFSGACKEMNLTL-EPEIFPAATDSRYI 352
Query: 383 RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
R G+PA+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 353 RAVGIPALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q6PTT0|ACY1B_RAT Aminoacylase-1B OS=Rattus norvegicus GN=Acy1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/402 (45%), Positives = 249/402 (61%), Gaps = 16/402 (3%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ RG+QDMKCV +QYLEA++RLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYTRGAQDMKCVSIQYLEAVKRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F H F++L G LDEGLA+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRHEFHALRAGFALDEGLANPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSV 268
PWW+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SV
Sbjct: 193 PWWVRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSV 251
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEF 328
N+ L+ G N+ P+ A FD RV P D ++ E ++ A +TFEF
Sbjct: 252 NLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEEQLQSWCQEAGEGVTFEF 305
Query: 329 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP 388
Q KF P +T TD ++PWW A ++ L +PEIFPA+TD+RY R G+P
Sbjct: 306 AQ------KFTEPRMTPTDDTDPWWAAFSGACKEMTLTL-EPEIFPAATDSRYIRAVGIP 358
Query: 389 AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
A+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 359 ALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q03154|ACY1_HUMAN Aminoacylase-1 OS=Homo sapiens GN=ACY1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 180/402 (44%), Positives = 245/402 (60%), Gaps = 16/402 (3%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSV 268
PWW+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SV
Sbjct: 193 PWWVRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSV 251
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEF 328
N+ L+ G N+ P+ A FD RV P D ++ E ++ A +T EF
Sbjct: 252 NLTKLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQLQSWCQAAGEGVTLEF 305
Query: 329 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP 388
Q K+ P +T TD SNPWW + N L +PEI PA+TD RY R G+P
Sbjct: 306 AQ------KWMHPQVTPTDDSNPWWAAFSRVCKDMNLTL-EPEIMPAATDNRYIRAVGVP 358
Query: 389 AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
A+GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 359 ALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 400
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q55DP8|ACY1_DICDI Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 250/399 (62%), Gaps = 17/399 (4%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR +L+I T P PDY +++KF++ +A+ ++ + P++L+K G P L ++
Sbjct: 13 FREFLKIRTDHPTPDYESSTKFLVEKAKEYNIPYEVYR-ETGTPIVLMKIEGLEPNLKTV 71
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSH DVVP+ W PF A D GNIF RG+QDMKCV MQ+LE RR+ SG +
Sbjct: 72 LLNSHVDVVPAVHDSWKVDPFSAWKDESGNIFGRGTQDMKCVCMQFLEVARRIVQSGQKL 131
Query: 154 VRSVYLSFVPDEEIGGH-DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
R+++LSFVPDEEIGG G EKF + F LN+G+ LDEGLAS T D+ FY ER PW
Sbjct: 132 KRTLHLSFVPDEEIGGSGKGMEKFVYTEKFRQLNIGLCLDEGLASPTNDFTVFYGERAPW 191
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL----KAEGEVVSV 268
W+ I A G GHG++ + +A+E L ++I + FR QF+ + G K G+V S+
Sbjct: 192 WVHITAVGNAGHGSRFIEGTAIEKLMRTINKMLAFRQEQFESLHHGQHECGKKLGDVTSL 251
Query: 269 NMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
N+ LKAG P N F N+ P++AEAGFDIR+PPT + + +I +EW A ++F
Sbjct: 252 NLTVLKAGIPIDHSNNFSYNVIPTQAEAGFDIRIPPTVNLDQFLDQI-KEWT-AEEGLSF 309
Query: 327 EFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG 386
+F ++ +T DS N WW +E+ +K + L EIFPA+TD+R+ R G
Sbjct: 310 KFASYIPKNE------MTKLDSDNKWWENFKESCKKMDINL-VTEIFPAATDSRFIRNLG 362
Query: 387 LPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425
+PA GFSP+ NTPILLHDHNEFLN+ YL+GIDI+ II
Sbjct: 363 IPAFGFSPINNTPILLHDHNEFLNEKVYLRGIDIFMGII 401
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Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q5RFB0|ACY1_PONAB Aminoacylase-1 OS=Pongo abelii GN=ACY1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 245/402 (60%), Gaps = 16/402 (3%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F +A L L Q +E A + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPKPDYGAAVAFFEERARQLGLGCQKVEVAPGYVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKC+ +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCISIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
+ R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER
Sbjct: 133 HRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSV 268
PWW+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SV
Sbjct: 193 PWWVRVTSTGRPGHASRFMEDTAAEKLHKVVSSILAFREKEWQRLQSNPHLK-EGSVTSV 251
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEF 328
N+ L+ G N+ P+ A FD RV P D ++ E ++ A +T EF
Sbjct: 252 NLTKLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQLQSWCQAAGEGVTLEF 305
Query: 329 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP 388
Q K+ P +T TD SNPWW + L +PEI PA+TD RY R G+P
Sbjct: 306 AQ------KWMHPQVTPTDDSNPWWAAFSRVCKDMKLTL-EPEIMPAATDNRYIRAVGIP 358
Query: 389 AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
A+GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 359 ALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 400
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Pongo abelii (taxid: 9601) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P37111|ACY1_PIG Aminoacylase-1 OS=Sus scrofa GN=ACY1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 239/400 (59%), Gaps = 13/400 (3%)
Query: 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
+ FR YL+I T QP PDY A F+ +A L L Q +E + +L WPG+NP L
Sbjct: 13 VTLFRQYLRIRTVQPEPDYGAAVAFLEERARQLGLGCQKVEVVPGHVVTVLTWPGTNPTL 72
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
SILLNSHTDVVP WSH PF D+ G I+ RG+QDMKCV +QYLEA+RRLK G
Sbjct: 73 SSILLNSHTDVVPVFKEHWSHDPFEGFKDADGYIYGRGAQDMKCVSIQYLEAVRRLKVEG 132
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
R+++++FVPDEE+GGH G E F F +L G LDEGLAS T+ + FY+ER
Sbjct: 133 HHFPRTIHMTFVPDEEVGGHQGMELFVKRPEFQALRAGFALDEGLASPTDAFTVFYSERS 192
Query: 211 PWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNM 270
PWWL + + G PGHG++ +++A E L K I S+ FR + +++ G V SVN+
Sbjct: 193 PWWLRVTSTGKPGHGSRFIEDTAAEKLHKVINSILAFREKEKQRLQSNQLKPGAVTSVNL 252
Query: 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQ 330
L+ G N+ P+ A FD RV P D ++ E ++ A +TFEF Q
Sbjct: 253 TMLEGGV------AYNVVPATMSACFDFRVAPDVDLKAFEEQLQSWCQAAGEGVTFEFVQ 306
Query: 331 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 390
K+ +T+TD S+PWW + L + EI PASTDARY R G+PA+
Sbjct: 307 ------KWMETQVTSTDDSDPWWAAFSGVFKDMKLAL-ELEICPASTDARYIRAAGVPAL 359
Query: 391 GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
GFSPM +TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 360 GFSPMNHTPVLLHDHDERLHEAVFLRGVDIYTQLLSALAS 399
|
Involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate). Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q55DL1|CBPS1_DICDI Probable carboxypeptidase S-like 1 OS=Dictyostelium discoideum GN=DDB_G0270582 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/386 (25%), Positives = 159/386 (41%), Gaps = 55/386 (14%)
Query: 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKC 134
NK +L +W GS+ L +LLNSH DVVP S+W+ +P+G NI+ RGS D K
Sbjct: 88 NKYSLLFEWTGSDKTLKPLLLNSHYDVVPVTESEWTFNPWGE--IRNDNIYGRGSIDNKV 145
Query: 135 VGMQYLEAIRRLKASGF-QPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193
+ M +E+I + A+ + QP+R++YL F DEE+GG +G A N + + DE
Sbjct: 146 IVMATMESIEAILANNYTQPIRTIYLCFGHDEELGGLNGHRMIARHFRENLVRAEAIFDE 205
Query: 194 GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFD 253
G ++ + + +I G G Y ++ N F ++ ++
Sbjct: 206 GCPFLASNFVPGFHD------IIAGVGVFEKGYLFYKLTSKVNSFTH-SAIPPKESAIGI 258
Query: 254 LVKAGLKAE---------------------GEVVSVNMAFLKAGTPSPNGFVM------- 285
L KA K E GE + N FL A T + M
Sbjct: 259 LSKALAKIESNPFAPIENIEKKNQLLQLFNGETIKSN-PFLDAMTKTTTALSMIHAGTKP 317
Query: 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTA 345
N+ P+ A A R+ E ++ RI++ M E S P TA
Sbjct: 318 NIIPTTASAWVSHRIINGNSIEYVKSRILDLINDTRITMEIEGFLEPS---PISSPFTTA 374
Query: 346 TDSSNPWWNLLEEAVRKANGKLG---KPEIFPASTDARYFRERGLPAIGFSPMANT---P 399
+ +L++ + + G P A+TD R++ + F P+
Sbjct: 375 -------YQILKQTIYQQFGGYNVKVVPTQLMANTDTRHYWDITDNIYRFMPIVGNFMDF 427
Query: 400 ILLHDHNEFLNQAEYLKGIDIYESII 425
+ +H NE ++ +Y+K I Y+ +I
Sbjct: 428 VSIHGSNEKISIDDYIKTIHFYKKLI 453
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
| >sp|Q55FR8|CBPS2_DICDI Probable carboxypeptidase S-like 2 OS=Dictyostelium discoideum GN=DDB_G0267984 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 79 ILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGM 137
++ W G + L ILL H DVVP+ KW+H PF H+D I+ RG+ D K M
Sbjct: 132 LVYNWKGLDESLKPILLAGHIDVVPTLFLDKWTHPPFSGHIDDT-YIWGRGTMDDKGSVM 190
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG---IVLDEG 194
LE++ L + GF+P RS+Y +F DEE+GG++GA F + F++ +G +LDEG
Sbjct: 191 AILESVEDLLSQGFKPQRSIYFAFGHDEELGGNNGA--FNINKYFDTNEIGPFEFILDEG 248
Query: 195 L 195
L
Sbjct: 249 L 249
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
| >sp|Q08BT9|P20D1_XENTR Probable carboxypeptidase PM20D1 OS=Xenopus tropicalis GN=pm20d1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 142/349 (40%), Gaps = 34/349 (9%)
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
L K GS+ L +L +H DVVP+ P W PF + G I+ RG+ D K +
Sbjct: 116 LFKVQGSDHNLLPYMLLAHIDVVPAPPESWEVPPFSGE-ERDGYIYGRGTLDDKNCVIGI 174
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTT 199
L+++ L G +P RS Y+ DEEI GH GA+K + + + VLDEGLA
Sbjct: 175 LQSLEFLLKRGHKPRRSFYIGLGHDEEISGHKGAQKIVEKLQSQGVKLAFVLDEGLAVLD 234
Query: 200 EDYRAF--------YAERCPWWLVIKARGAPGH---------------GAKLYDNSAMEN 236
+ E+ L + PGH + + M N
Sbjct: 235 GVIQGISQPVALVGTTEKGSVTLDLTVNRLPGHSSMPPSETSIGILAAAVSRLEQNMMPN 294
Query: 237 LFKSIESVRRFR--ASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP-SEAE 293
+F + F +++FD + A + S ++ + +PS N V + +
Sbjct: 295 MFGNGPEQDMFEHLSTKFDFPLNIIMANLWLFSPILSRILELSPSTNAIVRTTTALTIFK 354
Query: 294 AGFDIRVPPTTDAESLERRI-----VEEWAPASRNMTFEFKQRASLHDKFGRPILTATDS 348
AG V P T ++ R+ V+E +N + + S+ + F P+ + +
Sbjct: 355 AGIKSNVIPPTATATVNFRLHPAQTVQEVLDIVQNTIKDERVELSVLNSFD-PLPVSPND 413
Query: 349 SNPWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAIGFSPMA 396
+ +++L+ + +G P + +TD+R+F FSP+
Sbjct: 414 MSLGYHILQRTIHDVFSGPPVAPGVCVGNTDSRHFVNLTNSIYRFSPVV 462
|
Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 7 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 444 | ||||||
| 118486005 | 448 | unknown [Populus trichocarpa] | 0.941 | 0.933 | 0.820 | 0.0 | |
| 224102765 | 448 | predicted protein [Populus trichocarpa] | 0.941 | 0.933 | 0.815 | 0.0 | |
| 225428336 | 466 | PREDICTED: aminoacylase-1-like [Vitis vi | 0.970 | 0.924 | 0.765 | 0.0 | |
| 224132462 | 456 | predicted protein [Populus trichocarpa] | 0.941 | 0.916 | 0.798 | 0.0 | |
| 255546696 | 459 | Aminoacylase-1, putative [Ricinus commun | 0.995 | 0.962 | 0.756 | 0.0 | |
| 449444431 | 448 | PREDICTED: aminoacylase-1-like [Cucumis | 1.0 | 0.991 | 0.746 | 0.0 | |
| 356577275 | 449 | PREDICTED: aminoacylase-1-like [Glycine | 0.927 | 0.917 | 0.763 | 0.0 | |
| 30691729 | 430 | Peptidase M20/M25/M40 family protein [Ar | 0.934 | 0.965 | 0.735 | 0.0 | |
| 357438973 | 446 | Aminoacylase-1 [Medicago truncatula] gi| | 0.948 | 0.943 | 0.712 | 0.0 | |
| 30691732 | 433 | Peptidase M20/M25/M40 family protein [Ar | 0.934 | 0.958 | 0.730 | 0.0 |
| >gi|118486005|gb|ABK94846.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/418 (82%), Positives = 380/418 (90%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP P Y ++ F+++QA+ + LESQ++EF +NKPLILLKWPGS
Sbjct: 31 DAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGS 90
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 91 DPTLPSILLNSHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRL 150
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIGGHDGA KFADS +FNS+NVGIVLDEGLAS E+YR FY
Sbjct: 151 KSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLASPDENYRTFY 210
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AERCPWW+VIKA GAPGHGAKLYDNSAMENL KSIESVRRFRASQFDLVKAGLKAEGEV+
Sbjct: 211 AERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVI 270
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP SRNMTF
Sbjct: 271 SVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPVSRNMTF 330
Query: 327 EFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG 386
+FKQ+ S+HDK GRP++T TDSSNPWW+LLEEAVRKANGKLGKPEIFPASTDARYFR+ G
Sbjct: 331 QFKQQVSIHDKSGRPVVTKTDSSNPWWSLLEEAVRKANGKLGKPEIFPASTDARYFRQLG 390
Query: 387 LPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDEL 444
LPAIGFSPMANTPILLHDHNEFLNQ EYLKGI IYE+IIKAYASY++H+ D ++RDEL
Sbjct: 391 LPAIGFSPMANTPILLHDHNEFLNQDEYLKGIHIYEAIIKAYASYIEHTSDGSTRDEL 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102765|ref|XP_002312793.1| predicted protein [Populus trichocarpa] gi|222849201|gb|EEE86748.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/418 (81%), Positives = 379/418 (90%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP P Y ++ F+++QA+ + LESQ++EF +NKPLILLKWPGS
Sbjct: 31 DAAIISRFQQYLQINTAQPTPQYQQSADFLISQAKFIGLESQSIEFVQNKPLILLKWPGS 90
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 91 DPTLPSILLNSHTDVVPVEHHKWTHHPFGAHVDSHGNIFARGSQDMKCVGMQYLEAIRRL 150
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIGGHDGA KFADS +FNS+NVGIVLDEGLAS E+YR FY
Sbjct: 151 KSSGFVPLRSVYLSFVPDEEIGGHDGAAKFADSDIFNSMNVGIVLDEGLASPDENYRTFY 210
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AERCPWW+VIKA GAPGHGAKLYDNSAMENL KSIESVRRFRASQFDLVKAGLKAEGEV+
Sbjct: 211 AERCPWWMVIKATGAPGHGAKLYDNSAMENLLKSIESVRRFRASQFDLVKAGLKAEGEVI 270
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP SRNMTF
Sbjct: 271 SVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPVSRNMTF 330
Query: 327 EFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG 386
+FKQ+ S+HDK RP++T TDSSNPWW+LLEEAVRKANGKLGKPEIFPASTDARYFR+ G
Sbjct: 331 QFKQQVSIHDKSVRPVVTKTDSSNPWWSLLEEAVRKANGKLGKPEIFPASTDARYFRQLG 390
Query: 387 LPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDEL 444
LPAIGFSPMANTPILLHDHNEFLNQ EYLKGI IYE+IIKAYASY++H+ + ++RDEL
Sbjct: 391 LPAIGFSPMANTPILLHDHNEFLNQDEYLKGIHIYEAIIKAYASYIEHTSNGSTRDEL 448
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428336|ref|XP_002283140.1| PREDICTED: aminoacylase-1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/439 (76%), Positives = 386/439 (87%), Gaps = 8/439 (1%)
Query: 14 FYQLII----FSSPAKSDDS-IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ 68
FY L I FS+ DDS I+ RF+ YLQI+T+QPNP+Y A+ FI++QA+++SL SQ
Sbjct: 28 FYALFILSLLFSTVGADDDSSIVSRFQRYLQINTAQPNPNYYEAADFIVSQAQSISLHSQ 87
Query: 69 TLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARG 128
TLEF K KP++LLKWPGSNP LPSILLNSHTDVVP+E KW+H PF AH+D G+I+ARG
Sbjct: 88 TLEFVKGKPIVLLKWPGSNPNLPSILLNSHTDVVPAEHHKWTHPPFDAHVDGNGDIYARG 147
Query: 129 SQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG 188
SQDMKCVG+QYLEAIRRLK+SGFQP+R+VYLSFVPDEEIGGHDGAEKFADS F +NVG
Sbjct: 148 SQDMKCVGLQYLEAIRRLKSSGFQPLRTVYLSFVPDEEIGGHDGAEKFADSDEFKKMNVG 207
Query: 189 IVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFR 248
IVLDEGLAS E+YRAFYAER PWWLVI+A GAPGHGAKLYDN+AMEN+ KSIESVRRFR
Sbjct: 208 IVLDEGLASPNENYRAFYAERSPWWLVIRATGAPGHGAKLYDNTAMENILKSIESVRRFR 267
Query: 249 ASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308
A+QFDLVK+GLK+EGEV+SVNM FLKAGTPSP GFVMNLQPSEAEAGFDIR+PPT D S
Sbjct: 268 AAQFDLVKSGLKSEGEVISVNMVFLKAGTPSPTGFVMNLQPSEAEAGFDIRIPPTADQVS 327
Query: 309 LERRIVEEWAPASRNMTFE---FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANG 365
LE+RI EEWAPASRNMTFE FKQ+ S++DKFG+P+LTATDSSNPWW LLEEAV+K N
Sbjct: 328 LEKRIAEEWAPASRNMTFELGQFKQKVSVYDKFGKPVLTATDSSNPWWTLLEEAVKKVNE 387
Query: 366 KLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425
KLG+PEIFPASTDARYFR+ GLPAIGFSPM NTPILLHDHNEFLNQAEYL+GI+IYESII
Sbjct: 388 KLGRPEIFPASTDARYFRQLGLPAIGFSPMKNTPILLHDHNEFLNQAEYLRGIEIYESII 447
Query: 426 KAYASYVQHSKDEASRDEL 444
KAYAS+ +H++DE ++EL
Sbjct: 448 KAYASFNEHTRDEDRKEEL 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132462|ref|XP_002328282.1| predicted protein [Populus trichocarpa] gi|222837797|gb|EEE76162.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/421 (79%), Positives = 375/421 (89%), Gaps = 3/421 (0%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
D +II RF+ YLQI+T+QP+P Y ++ F+++QA+++ LE Q++EFA+NKPL+LLKWPGS
Sbjct: 36 DAAIISRFQQYLQINTAQPSPLYQQSADFLISQAKSIGLEFQSIEFAQNKPLVLLKWPGS 95
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P LPSILLNSHTDVVP E KW+HHPFGAH+DS GNIFARGSQDMKCVGMQYLEAIRRL
Sbjct: 96 DPTLPSILLNSHTDVVPVEQHKWAHHPFGAHVDSDGNIFARGSQDMKCVGMQYLEAIRRL 155
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
K+SGF P+RSVYLSFVPDEEIG DGA+KFADS +FNS+NVGI LDEGLAS +E+YR FY
Sbjct: 156 KSSGFHPLRSVYLSFVPDEEIGSCDGAKKFADSDIFNSMNVGIALDEGLASPSENYRTFY 215
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266
AER PWWLVIKA G PGHGAKLYDNSAMENL KS+ES+RRFRASQFDLVKAGLKAEGEV
Sbjct: 216 AERNPWWLVIKATGPPGHGAKLYDNSAMENLLKSVESIRRFRASQFDLVKAGLKAEGEVF 275
Query: 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF 326
SVN FLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLER+ EEWAP SRNMTF
Sbjct: 276 SVNTVFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERQFAEEWAPVSRNMTF 335
Query: 327 ---EFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 383
+FK++AS+HDKFGRP+LT TDSSNPWW+LLEEAVRKANGKL KPEIFPASTDARYFR
Sbjct: 336 QLGQFKEKASIHDKFGRPMLTKTDSSNPWWSLLEEAVRKANGKLSKPEIFPASTDARYFR 395
Query: 384 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDE 443
E+GLPAIGFSPMANTPILLHDHNEFLNQ EYLKGI+IYESIIKAYASYV +SRDE
Sbjct: 396 EQGLPAIGFSPMANTPILLHDHNEFLNQDEYLKGINIYESIIKAYASYVGDKSTRSSRDE 455
Query: 444 L 444
L
Sbjct: 456 L 456
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546696|ref|XP_002514407.1| Aminoacylase-1, putative [Ricinus communis] gi|223546504|gb|EEF48003.1| Aminoacylase-1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/443 (75%), Positives = 375/443 (84%), Gaps = 1/443 (0%)
Query: 3 NRHRLLHICFVFYQLIIFSSP-AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAE 61
N ++H C + + + + S SII RF+ YLQI+T+QPNP Y A++FI+++A+
Sbjct: 17 NLFLIIHACLILTNPVALAEEDSSSSSSIISRFQQYLQINTAQPNPHYQEAAEFIISEAK 76
Query: 62 ALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQ 121
++ LE Q +E K KPL+LLKW GSNP LPSILL SHTDVVP E KWS+ FGAHLDS
Sbjct: 77 SIGLEFQCIELVKGKPLVLLKWQGSNPTLPSILLYSHTDVVPVEQHKWSYPAFGAHLDSD 136
Query: 122 GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181
GNI+ARGSQDMKCVGMQYLEA+RRL +SGF P+RSVY+ F PDEEIGGHDGAEKFA S +
Sbjct: 137 GNIYARGSQDMKCVGMQYLEAVRRLMSSGFHPLRSVYILFSPDEEIGGHDGAEKFAHSDI 196
Query: 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSI 241
F S+NVGIVLDEGLAS TE+YR FYAER PWWLVIKA GAPGHGAKLYDNSAMENL KSI
Sbjct: 197 FKSMNVGIVLDEGLASPTEEYRPFYAERSPWWLVIKAIGAPGHGAKLYDNSAMENLLKSI 256
Query: 242 ESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVP 301
E++RRFRASQFDLVK+GLKAEGEVVSVNM LKAGTPSP GFVMNLQPSEAEAGFDIRVP
Sbjct: 257 ETIRRFRASQFDLVKSGLKAEGEVVSVNMVSLKAGTPSPTGFVMNLQPSEAEAGFDIRVP 316
Query: 302 PTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVR 361
P D ESLERRI EEW PASRNMTF+FKQ+A LHDKFGRP+LT TDSSNPWW LLEEAV+
Sbjct: 317 PIADPESLERRIAEEWGPASRNMTFQFKQKAILHDKFGRPLLTKTDSSNPWWALLEEAVQ 376
Query: 362 KANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421
KANGKLGKPEIFPA+TDARYFRE GLPAIGFSPMANTP+LLHDHNEFLNQAEYLKGIDIY
Sbjct: 377 KANGKLGKPEIFPAATDARYFRELGLPAIGFSPMANTPLLLHDHNEFLNQAEYLKGIDIY 436
Query: 422 ESIIKAYASYVQHSKDEASRDEL 444
SI+K YASYV H+ E +DEL
Sbjct: 437 ASIVKVYASYVNHASSEVVKDEL 459
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444431|ref|XP_004139978.1| PREDICTED: aminoacylase-1-like [Cucumis sativus] gi|449475686|ref|XP_004154523.1| PREDICTED: aminoacylase-1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/446 (74%), Positives = 378/446 (84%), Gaps = 2/446 (0%)
Query: 1 MRNRHRLLHICFVFYQLIIFSSPA--KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILA 58
++ H LL I +F+ L I +S S +II RF+ YLQI+T QP+P Y A+ FI++
Sbjct: 3 FKSLHFLLSIITLFFFLSISTSEQDPSSPSAIISRFQQYLQINTVQPSPQYYEAADFIIS 62
Query: 59 QAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHL 118
QA++LSLES T+EF + KPL++LKWPGSNP+LPSILLNSHTDVVP+E KW+H P GAH+
Sbjct: 63 QAKSLSLESHTIEFVEGKPLVILKWPGSNPELPSILLNSHTDVVPAEHKKWTHPPLGAHI 122
Query: 119 DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD 178
DS GNI+ARGSQDMKCVGMQYLEAIRRLKASGFQP+RSVYLSFVPDEEIGGH GAEKFA+
Sbjct: 123 DSHGNIYARGSQDMKCVGMQYLEAIRRLKASGFQPLRSVYLSFVPDEEIGGHGGAEKFAE 182
Query: 179 SHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLF 238
S F LNV IVLDEGL S E+YR FY E+ PWWLVIKA GAPGHGA+LYDN+A+ENLF
Sbjct: 183 SDEFKKLNVAIVLDEGLPSPGENYRVFYGEKSPWWLVIKAVGAPGHGARLYDNTALENLF 242
Query: 239 KSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
KSIE+VRRFRASQFDL+KAGLK EG+VVSVNM FLK+G PSP GFVMNLQPSEAEAGFD+
Sbjct: 243 KSIETVRRFRASQFDLIKAGLKTEGDVVSVNMVFLKSGIPSPTGFVMNLQPSEAEAGFDV 302
Query: 299 RVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEE 358
RVPPTT+ ESLERRI EEWAPASRNMTFEFKQ+ S+++KFG+P LTA D SNP WNLLEE
Sbjct: 303 RVPPTTNPESLERRIAEEWAPASRNMTFEFKQKESIYNKFGKPALTAIDKSNPRWNLLEE 362
Query: 359 AVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGI 418
AVR ANGKL PEIFPASTDARYFR GLPAIGFSPM NTPILLHDHNEFLNQAEYLKGI
Sbjct: 363 AVRNANGKLANPEIFPASTDARYFRNLGLPAIGFSPMVNTPILLHDHNEFLNQAEYLKGI 422
Query: 419 DIYESIIKAYASYVQHSKDEASRDEL 444
++YESIIKAYASY E+ +DEL
Sbjct: 423 EVYESIIKAYASYDGDKPMESFKDEL 448
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577275|ref|XP_003556753.1| PREDICTED: aminoacylase-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/415 (76%), Positives = 360/415 (86%), Gaps = 3/415 (0%)
Query: 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92
RF+ YL+I+T+QP P Y A+ F+++Q +ALSLESQ++EF KPL+LLKW GSNP LPS
Sbjct: 35 RFQQYLKINTAQPTPRYHEAADFLISQGKALSLESQSIEFVAGKPLVLLKWEGSNPNLPS 94
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
ILL SHTDVVPSE SKW+HHPF AHLDS G IF+RGSQDMKCVGMQYLEA+R LK+ F+
Sbjct: 95 ILLYSHTDVVPSEHSKWTHHPFSAHLDSSGRIFSRGSQDMKCVGMQYLEALRLLKSHNFR 154
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
P+RS+YL+F PDEEIGGHDGAEKFADS +F S+NVG+VLDEGLAS YR+FYAER PW
Sbjct: 155 PLRSLYLAFSPDEEIGGHDGAEKFADSSIFQSMNVGVVLDEGLASPDPHYRSFYAERSPW 214
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAF 272
WLVIKA G PGHGAKLYDNSAMENLFKSIES+RRFR+SQFDL+KAG KAEG+VVSVNM F
Sbjct: 215 WLVIKAFGVPGHGAKLYDNSAMENLFKSIESIRRFRSSQFDLIKAGFKAEGDVVSVNMVF 274
Query: 273 LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTF---EFK 329
LKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D ESLERRI EEWAP+SRNM+F +FK
Sbjct: 275 LKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADPESLERRIAEEWAPSSRNMSFTLGQFK 334
Query: 330 QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPA 389
Q+A DK G+PILT TDSSNPWW LLE AV+KA GKLGKPE+FPA+TD+RYFRERGLPA
Sbjct: 335 QKAHTRDKSGKPILTKTDSSNPWWALLENAVQKAGGKLGKPEVFPAATDSRYFRERGLPA 394
Query: 390 IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDEL 444
IGFSPMANTP+LLHDHNEFL++ EYLKGI IYESIIK YAS + +D AS+DEL
Sbjct: 395 IGFSPMANTPVLLHDHNEFLHKDEYLKGIKIYESIIKVYASLDDNGRDGASKDEL 449
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30691729|ref|NP_568036.2| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gi|18650600|gb|AAL75900.1| AT4g38220/F20D10_340 [Arabidopsis thaliana] gi|332661494|gb|AEE86894.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/423 (73%), Positives = 358/423 (84%), Gaps = 8/423 (1%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARY 381
RNM+FEFKQ+ + G+ LTA D SNPWW LLE AV++A G+ KPEIFPASTDARY
Sbjct: 316 RNMSFEFKQKLT-----GKQFLTAADDSNPWWGLLENAVKEAGGRTSKPEIFPASTDARY 370
Query: 382 FRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASR 441
FR+ G+PA GFSP++NTP LLHDHNE+L +AEYLKGI++Y SIIKAYASY S SR
Sbjct: 371 FRKAGVPAFGFSPISNTPSLLHDHNEYLGKAEYLKGIEVYVSIIKAYASYESKS---GSR 427
Query: 442 DEL 444
DEL
Sbjct: 428 DEL 430
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357438973|ref|XP_003589763.1| Aminoacylase-1 [Medicago truncatula] gi|355478811|gb|AES60014.1| Aminoacylase-1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/421 (71%), Positives = 351/421 (83%)
Query: 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKW 83
A + +II RF+ YLQ T P P+YT ++ F+ QA +LSL+SQT+EF KPLILLKW
Sbjct: 26 ASEESNIISRFQQYLQTRTDHPTPNYTQSTNFLTTQANSLSLQSQTIEFVSGKPLILLKW 85
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAI 143
G+N LPSI+L SHTDVVP+E KW HHPF AH+D +G I+ARGSQDMKCVGMQYLEA+
Sbjct: 86 TGTNSNLPSIMLYSHTDVVPAEHDKWDHHPFEAHVDDEGRIYARGSQDMKCVGMQYLEAV 145
Query: 144 RRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYR 203
R LK FQP R+VYL F PDEE+GGHDGAEKF+ S VF LNVG+VLDEGLAS E YR
Sbjct: 146 RNLKGWDFQPKRTVYLVFAPDEEVGGHDGAEKFSLSKVFQELNVGVVLDEGLASPDEHYR 205
Query: 204 AFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263
AFY ER PWWLVIKA GAPGHG+KLYDNSAMENL+KSIE+++R+RASQFDL+KAGLKA+G
Sbjct: 206 AFYGERSPWWLVIKAVGAPGHGSKLYDNSAMENLWKSIENIQRYRASQFDLIKAGLKADG 265
Query: 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRN 323
+VVS+NMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPPT D +SLERRI EEWAP SRN
Sbjct: 266 DVVSINMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPTADTKSLERRIAEEWAPTSRN 325
Query: 324 MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 383
M+F FK++ S+HD G+P+ T TDSSNPWW LL+ AV +A GK+ KPE+FPASTD R+FR
Sbjct: 326 MSFTFKEKISVHDASGKPVFTKTDSSNPWWALLKNAVEEAGGKIRKPEVFPASTDGRFFR 385
Query: 384 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDEASRDE 443
GLP IGFSPMANTPILLHDHNE+L+++EYLKGI IYESIIKAYAS+ +H +D S+DE
Sbjct: 386 NLGLPTIGFSPMANTPILLHDHNEYLHKSEYLKGIKIYESIIKAYASFDEHGRDARSKDE 445
Query: 444 L 444
L
Sbjct: 446 L 446
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30691732|ref|NP_849516.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gi|332661495|gb|AEE86895.1| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/426 (73%), Positives = 358/426 (84%), Gaps = 11/426 (2%)
Query: 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILL 81
S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLESQT+EF K KPL+LL
Sbjct: 16 SAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLESQTIEFVKGKPLLLL 75
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLE 141
KW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+ARGSQDMKCVGMQYLE
Sbjct: 76 KWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYARGSQDMKCVGMQYLE 135
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
AIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN+ IVLDEGL S TE
Sbjct: 136 AIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLNIAIVLDEGLPSPTES 195
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKA 261
YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RRFRASQFDL+KAG A
Sbjct: 196 YRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRRFRASQFDLLKAGGIA 255
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
EG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DAE+LERR+VEEWAPA+
Sbjct: 256 EGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDAEALERRLVEEWAPAA 315
Query: 322 RNMTFE---FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 378
RNM+FE FKQ+ + G+ LTA D SNPWW LLE AV++A G+ KPEIFPASTD
Sbjct: 316 RNMSFELGQFKQKLT-----GKQFLTAADDSNPWWGLLENAVKEAGGRTSKPEIFPASTD 370
Query: 379 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQHSKDE 438
ARYFR+ G+PA GFSP++NTP LLHDHNE+L +AEYLKGI++Y SIIKAYASY S
Sbjct: 371 ARYFRKAGVPAFGFSPISNTPSLLHDHNEYLGKAEYLKGIEVYVSIIKAYASYESKS--- 427
Query: 439 ASRDEL 444
SRDEL
Sbjct: 428 GSRDEL 433
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 444 | ||||||
| TAIR|locus:2120958 | 433 | AQI "aquaporin interactor" [Ar | 0.963 | 0.988 | 0.714 | 9.4e-169 | |
| TAIR|locus:2194884 | 438 | AT1G44820 [Arabidopsis thalian | 0.957 | 0.970 | 0.541 | 3.8e-133 | |
| TAIR|locus:2205846 | 435 | AT1G44180 [Arabidopsis thalian | 0.957 | 0.977 | 0.555 | 1.5e-131 | |
| MGI|MGI:87913 | 408 | Acy1 "aminoacylase 1" [Mus mus | 0.880 | 0.958 | 0.459 | 7e-93 | |
| ZFIN|ZDB-GENE-040426-755 | 420 | acy1 "aminoacylase 1" [Danio r | 0.878 | 0.928 | 0.443 | 1.9e-92 | |
| UNIPROTKB|Q6AYS7 | 408 | Acy1a "Aminoacylase-1A" [Rattu | 0.880 | 0.958 | 0.454 | 3e-92 | |
| RGD|2030 | 408 | Acy1 "aminoacylase 1" [Rattus | 0.860 | 0.936 | 0.457 | 8.1e-92 | |
| UNIPROTKB|F1MR63 | 501 | ACY1 "Uncharacterized protein" | 0.860 | 0.762 | 0.465 | 1.7e-91 | |
| UNIPROTKB|B4DNW0 | 498 | ACY1 "cDNA FLJ60317, highly si | 0.860 | 0.767 | 0.452 | 1.7e-89 | |
| UNIPROTKB|Q03154 | 408 | ACY1 "Aminoacylase-1" [Homo sa | 0.860 | 0.936 | 0.452 | 1.7e-89 |
| TAIR|locus:2120958 AQI "aquaporin interactor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1641 (582.7 bits), Expect = 9.4e-169, P = 9.4e-169
Identities = 315/441 (71%), Positives = 366/441 (82%)
Query: 7 LLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE 66
LL + V +++ S DD+I+ RF+ YL+I+T QPNP+Y A FI++QA+ LSLE
Sbjct: 3 LLRLLLVV--VVLHLSAVAGDDAIVSRFQEYLRINTVQPNPEYYKAVDFIISQAKPLSLE 60
Query: 67 SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFA 126
SQT+EF K KPL+LLKW GS+P LP+ LLNSHTDVVP E SKW+HHP AH+D G+I+A
Sbjct: 61 SQTIEFVKGKPLLLLKWVGSDPTLPAFLLNSHTDVVPFEDSKWTHHPLQAHMDHHGDIYA 120
Query: 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186
RGSQDMKCVGMQYLEAIR+L+ASGF+P+RSVYLSFVPDEEIGGHDGAEKFA+S +F SLN
Sbjct: 121 RGSQDMKCVGMQYLEAIRKLQASGFKPLRSVYLSFVPDEEIGGHDGAEKFAESQLFKSLN 180
Query: 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR 246
+ IVLDEGL S TE YR FY ER PWWLVIKA+G PGHGAKLYDNSAMENL KSIES+RR
Sbjct: 181 IAIVLDEGLPSPTESYRVFYGERSPWWLVIKAKGPPGHGAKLYDNSAMENLLKSIESIRR 240
Query: 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
FRASQFDL+KAG AEG+VVSVNMAFLKAGTPSP GFVMNLQPSEAEAGFDIRVPP+ DA
Sbjct: 241 FRASQFDLLKAGGIAEGDVVSVNMAFLKAGTPSPTGFVMNLQPSEAEAGFDIRVPPSVDA 300
Query: 307 ESLERRIVEEWAPASRNMTFE---FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKA 363
E+LERR+VEEWAPA+RNM+FE FKQ+ + G+ LTA D SNPWW LLE AV++A
Sbjct: 301 EALERRLVEEWAPAARNMSFELGQFKQKLT-----GKQFLTAADDSNPWWGLLENAVKEA 355
Query: 364 NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 423
G+ KPEIFPASTDARYFR+ G+PA GFSP++NTP LLHDHNE+L +AEYLKGI++Y S
Sbjct: 356 GGRTSKPEIFPASTDARYFRKAGVPAFGFSPISNTPSLLHDHNEYLGKAEYLKGIEVYVS 415
Query: 424 IIKAYASYVQHSKDEASRDEL 444
IIKAYASY SK SRDEL
Sbjct: 416 IIKAYASY--ESKS-GSRDEL 433
|
|
| TAIR|locus:2194884 AT1G44820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 230/425 (54%), Positives = 311/425 (73%)
Query: 7 LLHICFVFYQLIIFSSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE 66
LL +F + S + +D+ I RF+ YL+ +T+ PNP+YT F++ QA+++ L
Sbjct: 6 LLWTLIIFSIIFSLQSSSSEEDTPITRFQQYLRFNTAHPNPNYTAPISFLINQAQSIGLT 65
Query: 67 SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFA 126
++T+EF KP++L+ W GSNP LPSIL NSH D VP+E KW++ PF AH G+I+A
Sbjct: 66 TKTIEFISGKPILLITWLGSNPNLPSILFNSHLDSVPAESEKWTYPPFSAHKTIDGHIYA 125
Query: 127 RGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186
RG+QD KC+G+QYLE+IR LK+ GF P+R++++S+VP+EEIGG DG KFA S F LN
Sbjct: 126 RGAQDDKCIGVQYLESIRNLKSRGFSPLRTIHISYVPEEEIGGFDGMMKFAASSEFKDLN 185
Query: 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRR 246
+G +DEG A+ +++R FYA+R PW VIKA G PGHGAKLYDNSAMENL KS+E + R
Sbjct: 186 LGFAMDEGQANPGDEFRVFYADRVPWHFVIKAEGIPGHGAKLYDNSAMENLMKSVELISR 245
Query: 247 FRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
FR SQFD VKAG A EV+SVN +LKAGTP+ GFVMN+QPSEAEAG+D+R+PP D
Sbjct: 246 FRESQFDFVKAGKAAYSEVISVNPVYLKAGTPTTTGFVMNMQPSEAEAGYDLRLPPMADP 305
Query: 307 ESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 366
+ +++RI EEWAP+ RNMT+ +++ L D GRPI+T + SNPWW++ ++AV GK
Sbjct: 306 DVMKKRIAEEWAPSIRNMTYSIQEKGKLRDHLGRPIMTPVNDSNPWWSIFKQAVEAMGGK 365
Query: 367 LGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426
L KPEI ++TD+R+ R G+P GFSPM NTPILLHDHNEFL ++KGI++YES+I
Sbjct: 366 LAKPEILASTTDSRFIRTLGIPTFGFSPMTNTPILLHDHNEFLKDTVFMKGIEVYESVIS 425
Query: 427 AYASY 431
A +S+
Sbjct: 426 ALSSF 430
|
|
| TAIR|locus:2205846 AT1G44180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
Identities = 237/427 (55%), Positives = 308/427 (72%)
Query: 7 LLHICFVFYQLIIFSSPAKSD--DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS 64
LL F+F + S +K + D+ I RF+ YL+ +T+ PNP+YT F+L QA ++
Sbjct: 6 LLWTLFLFSFIFSLQSHSKEEEEDTPITRFQQYLRFNTAHPNPNYTAPISFLLDQARSIG 65
Query: 65 LESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124
L S+T+EF KP++LL W GSN L SIL NSH D VP+E KW H PF AH G+I
Sbjct: 66 LTSRTIEFVPGKPVLLLTWLGSNLNLSSILFNSHLDSVPAESEKWIHPPFSAHRTIDGHI 125
Query: 125 FARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184
+ARG+QD KC+G+QYLEAIR LK+ F P+R++++S+VP+EEIGG G KFA S F
Sbjct: 126 YARGAQDDKCIGVQYLEAIRNLKSRSFSPLRTIHISYVPEEEIGGFGGMMKFAASSEFKD 185
Query: 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESV 244
LN+G V+DEG AS +++R FYAER PW L I+A G PGHGAKLYDNSAMENL KS+E +
Sbjct: 186 LNLGFVMDEGQASPGDEFRVFYAERTPWHLAIRANGMPGHGAKLYDNSAMENLMKSVELI 245
Query: 245 RRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304
RFR SQFD VKAG A EV+SVN +LKAGTPS GFVMN+QPSEAE G+D+R+PP
Sbjct: 246 SRFRESQFDFVKAGKAANSEVISVNPVYLKAGTPSTTGFVMNMQPSEAEVGYDLRLPPMA 305
Query: 305 DAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKAN 364
D +L++RI EEWAP+ RNMT+ KQ+ L D GRPI+T T+ +NPWW++ ++AV
Sbjct: 306 DPVALKKRIAEEWAPSIRNMTYTLKQQGKLTDHLGRPIMTTTNDTNPWWSIFKQAVEATG 365
Query: 365 GKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESI 424
GKL KPEI ++TD+R+ R G+P +GFSPM NTPIL+HDHNEFL ++KGI +YES+
Sbjct: 366 GKLAKPEILISTTDSRFIRTLGIPVLGFSPMINTPILVHDHNEFLKDTVFMKGIGVYESV 425
Query: 425 IKAYASY 431
I A +S+
Sbjct: 426 ISALSSF 432
|
|
| MGI|MGI:87913 Acy1 "aminoacylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
Identities = 188/409 (45%), Positives = 254/409 (62%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY A F+ +A L L Q +E + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGGAITFLEERARQLGLSCQKIEVVPGFVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP LPSILLNSHTDVVP W H PF A DS+G I+ARGSQDMK V +QYLEA+R
Sbjct: 67 GTNPSLPSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGSQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K I S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWVRVTSTGKPGHASRFIEDTAAEKLHKVISSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-AS 321
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ + W A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSASFDFRVAPDVDMKAFEKQL-QRWCQEAG 298
Query: 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARY 381
+TFEF Q KF P +T TD S+PWW A + N L +PEIFPA+TD+RY
Sbjct: 299 EGVTFEFAQ------KFTEPRMTPTDDSDPWWAAFSGACKAMNLTL-EPEIFPAATDSRY 351
Query: 382 FRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
R G+PA+GFSPM TP+LLHDHNE L++ +L+G+DIY ++ A AS
Sbjct: 352 IRAVGIPALGFSPMNRTPVLLHDHNERLHEDIFLRGVDIYTGLLSALAS 400
|
|
| ZFIN|ZDB-GENE-040426-755 acy1 "aminoacylase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 180/406 (44%), Positives = 253/406 (62%)
Query: 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85
++D + FR YL++ T P PDY A KF+ AE L+L + +E + + ++ W G
Sbjct: 20 AEDPSVTLFREYLRLKTVHPEPDYDAALKFLERMAEELALPMKKVEVCPGRVVAIISWIG 79
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
S P+L S++LNSHTDVVP W HHPF A D+ GNI+ARG+QDMK V +QY+EAIRR
Sbjct: 80 SRPELKSVVLNSHTDVVPVYEEHWEHHPFAAVKDADGNIYARGAQDMKSVTIQYIEAIRR 139
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAF 205
LKA+G + R+++L+FVPDEE+GGH G E F F LN+G LDEGLA+ T Y F
Sbjct: 140 LKAAGKRFSRTIHLTFVPDEEVGGHKGMETFVKHPEFQKLNMGFALDEGLANPTNAYTVF 199
Query: 206 YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG-LKAEGE 264
Y ER PWW+ ++ G+PGHG++ +N+A E L + I S FR + + G+
Sbjct: 200 YGERNPWWITVRCPGSPGHGSRFVENTAAEKLRRVINSFLEFREKEKQRLNTSECFTLGD 259
Query: 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA-PASRN 323
V ++NM +K G N+ P+E + FD+R+PPT + + E +I + W A +
Sbjct: 260 VTTINMTMVKGGV------AYNVVPAEMDVSFDLRIPPTVNLQEFEEKI-KVWCREAGED 312
Query: 324 MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR 383
+T++F Q+ + LT+TD ++PWW + N L K EIFPA+TD+R+ R
Sbjct: 313 VTYDFAQKHMDQN------LTSTDENDPWWQAFSSTCKAMNMTL-KKEIFPAATDSRFIR 365
Query: 384 ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429
E GLPAIGFSPM TPILLHDHNE+LN+ +L+GI +YE +I A A
Sbjct: 366 EVGLPAIGFSPMDLTPILLHDHNEYLNEQVFLQGIQVYERLIPALA 411
|
|
| UNIPROTKB|Q6AYS7 Acy1a "Aminoacylase-1A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 186/409 (45%), Positives = 257/409 (62%)
Query: 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP 84
+S+ + FR YL+I T QPNPDY +A F+ +A L L Q +E A + +L WP
Sbjct: 7 ESEHPSVTLFRQYLRICTVQPNPDYGSAVTFLEERARQLGLSCQKIEVAPGYVITVLTWP 66
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
G+NP L SILLNSHTDVVP W H PF A DS+G I+ARG+QDMK V +QYLEA+R
Sbjct: 67 GTNPLLHSILLNSHTDVVPVFKEHWHHDPFEAFKDSEGYIYARGAQDMKSVSIQYLEAVR 126
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
RLK+ G + R+++++FVPDEE+GGH G E F F +L G LDEGLA+ T+ +
Sbjct: 127 RLKSEGHRFPRTIHMTFVPDEEVGGHKGMELFVKRPEFQALRAGFALDEGLANPTDAFTV 186
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAE 262
FY+ER PWW+ + + G PGH ++ +++A E L K + S+ FR + ++A LK E
Sbjct: 187 FYSERSPWWIRVTSTGKPGHASRFIEDTAAEKLHKVVNSILAFREKERQRLQANPHLK-E 245
Query: 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-AS 321
G V SVN+ L+ G N+ P+ A FD RV P D ++ E+++ + W A
Sbjct: 246 GAVTSVNLTKLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEKQL-QSWCQEAG 298
Query: 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARY 381
+TFEF Q KF P +T TD ++PWW A ++ N L +PEIFPA+TD+RY
Sbjct: 299 EGVTFEFAQ------KFTEPRMTPTDDTDPWWAAFSGACKEMNLTL-EPEIFPAATDSRY 351
Query: 382 FRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
R G+PA+GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 352 IRAVGIPALGFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
|
|
| RGD|2030 Acy1 "aminoacylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 183/400 (45%), Positives = 250/400 (62%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ RG+QDMKCV +QYLEA++RLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYTRGAQDMKCVSIQYLEAVKRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F H F++L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRHEFHALRAGFALDEGLANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEFKQ 330
L+ G N+ P+ A FD RV P D ++ E ++ + W A +TFEF Q
Sbjct: 255 KLEGGV------AYNVVPATMSACFDFRVAPDVDMKAFEEQL-QSWCQEAGEGVTFEFAQ 307
Query: 331 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 390
KF P +T TD ++PWW A ++ L +PEIFPA+TD+RY R G+PA+
Sbjct: 308 ------KFTEPRMTPTDDTDPWWAAFSGACKEMTLTL-EPEIFPAATDSRYIRAVGIPAL 360
Query: 391 GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
GFSPM TP+LLHDHNE L++A +L+G+DIY ++ A AS
Sbjct: 361 GFSPMNRTPVLLHDHNERLHEAVFLRGVDIYTRLVAALAS 400
|
|
| UNIPROTKB|F1MR63 ACY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 186/400 (46%), Positives = 252/400 (63%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F +A L L Q +E A + + +L WPG+NP+L S+
Sbjct: 109 FRQYLRIRTLQPEPDYGAAVAFFEERALQLGLGCQKVEVAPGRVVTVLTWPGTNPKLSSV 168
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A D+ G I+ RG+QDMKCV +QYLEA+RRLKA G
Sbjct: 169 LLNSHTDVVPVFQEYWSHDPFEAFKDADGYIYGRGAQDMKCVSIQYLEAVRRLKAEGHHF 228
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++L+FVPDEEIGGH G E F F +L G LDEGLA+ T+ + FY+ER PWW
Sbjct: 229 PRTIHLTFVPDEEIGGHQGMELFVKRPEFQALRAGFALDEGLANPTDAFTVFYSERSPWW 288
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGHG++ +++A E L K + S+ FR + +++ LK EG V SVN+
Sbjct: 289 VRVTSTGKPGHGSRFIEDTAAEKLHKVVSSILAFREKERQRLQSDPQLK-EGAVTSVNLT 347
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFEFKQ 330
L+ G N+ P+ A FD RV P D ++ E ++ ++W A+ +TFEF Q
Sbjct: 348 ILEGGV------AYNVVPATMSASFDFRVAPDVDLKAFEGQL-QDWCQAAGEGVTFEFAQ 400
Query: 331 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 390
K+ P +T TD S+PWW A + N L +PEIFPA+TD+RY R G+PA+
Sbjct: 401 ------KWTEPQVTPTDDSDPWWAAFSGACKDMNLTL-EPEIFPAATDSRYLRAVGVPAL 453
Query: 391 GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
GFSPM TPILLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 454 GFSPMNRTPILLHDHDERLHEAVFLRGVDIYTRLLPALAS 493
|
|
| UNIPROTKB|B4DNW0 ACY1 "cDNA FLJ60317, highly similar to Aminoacylase-1 (EC 3.5.1.14)" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 181/400 (45%), Positives = 247/400 (61%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 106 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 165
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G +
Sbjct: 166 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRF 225
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER PWW
Sbjct: 226 PRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWW 285
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 286 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 344
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFEFKQ 330
L+ G N+ P+ A FD RV P D ++ E ++ + W A+ +T EF Q
Sbjct: 345 KLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQL-QSWCQAAGEGVTLEFAQ 397
Query: 331 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 390
K+ P +T TD SNPWW + N L +PEI PA+TD RY R G+PA+
Sbjct: 398 ------KWMHPQVTPTDDSNPWWAAFSRVCKDMNLTL-EPEIMPAATDNRYIRAVGVPAL 450
Query: 391 GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 451 GFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 490
|
|
| UNIPROTKB|Q03154 ACY1 "Aminoacylase-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 181/400 (45%), Positives = 247/400 (61%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
FR YL+I T QP PDY A F A L L Q +E A + +L WPG+NP L SI
Sbjct: 16 FRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSI 75
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYLEA+RRLK G +
Sbjct: 76 LLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRF 135
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWW 213
R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+ + FY+ER PWW
Sbjct: 136 PRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTDAFTVFYSERSPWW 195
Query: 214 LVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAG--LKAEGEVVSVNMA 271
+ + + G PGH ++ +++A E L K + S+ FR ++ +++ LK EG V SVN+
Sbjct: 196 VRVTSTGRPGHASRFMEDTAAEKLHKVVNSILAFREKEWQRLQSNPHLK-EGSVTSVNLT 254
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFEFKQ 330
L+ G N+ P+ A FD RV P D ++ E ++ + W A+ +T EF Q
Sbjct: 255 KLEGGV------AYNVIPATMSASFDFRVAPDVDFKAFEEQL-QSWCQAAGEGVTLEFAQ 307
Query: 331 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 390
K+ P +T TD SNPWW + N L +PEI PA+TD RY R G+PA+
Sbjct: 308 ------KWMHPQVTPTDDSNPWWAAFSRVCKDMNLTL-EPEIMPAATDNRYIRAVGVPAL 360
Query: 391 GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
GFSPM TP+LLHDH+E L++A +L+G+DIY ++ A AS
Sbjct: 361 GFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALAS 400
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q99JW2 | ACY1_MOUSE | 3, ., 5, ., 1, ., 1, 4 | 0.4583 | 0.8828 | 0.9607 | yes | no |
| Q6PTT0 | ACY1B_RAT | 3, ., 5, ., 1, ., 1, 4 | 0.4527 | 0.8693 | 0.9460 | yes | no |
| Q55DP8 | ACY1_DICDI | 3, ., 5, ., 1, ., 1, 4 | 0.4536 | 0.8603 | 0.9362 | yes | no |
| Q03154 | ACY1_HUMAN | 3, ., 5, ., 1, ., 1, 4 | 0.4477 | 0.8693 | 0.9460 | yes | no |
| Q5RFB0 | ACY1_PONAB | 3, ., 5, ., 1, ., 1, 4 | 0.4427 | 0.8693 | 0.9460 | yes | no |
| P37111 | ACY1_PIG | 3, ., 5, ., 1, ., 1, 4 | 0.4425 | 0.8716 | 0.9508 | yes | no |
| Q6AYS7 | ACY1A_RAT | 3, ., 5, ., 1, ., 1, 4 | 0.4534 | 0.8828 | 0.9607 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.1.14 | 0.914 |
| 3rd Layer | 3.5.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 444 | |||
| cd05646 | 391 | cd05646, M20_AcylaseI_like, M20 Aminoacylase-I lik | 0.0 | |
| TIGR01880 | 400 | TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid am | 0.0 | |
| cd05675 | 426 | cd05675, M20_yscS_like, M20 Peptidase, carboxypept | 5e-54 | |
| cd08659 | 365 | cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo | 3e-52 | |
| pfam01546 | 310 | pfam01546, Peptidase_M20, Peptidase family M20/M25 | 2e-45 | |
| COG0624 | 409 | COG0624, ArgE, Acetylornithine deacetylase/Succiny | 6e-43 | |
| cd05674 | 441 | cd05674, M20_yscS, M20 Peptidase, carboxypeptidase | 4e-40 | |
| PRK08262 | 486 | PRK08262, PRK08262, hypothetical protein; Provisio | 1e-34 | |
| PRK07906 | 426 | PRK07906, PRK07906, hypothetical protein; Provisio | 2e-34 | |
| PRK08651 | 394 | PRK08651, PRK08651, succinyl-diaminopimelate desuc | 5e-32 | |
| TIGR01910 | 375 | TIGR01910, DapE-ArgE, acetylornithine deacetylase | 4e-30 | |
| cd08011 | 390 | cd08011, M20_ArgE_DapE_like6, M20 Peptidases with | 1e-24 | |
| cd03895 | 399 | cd03895, M20_ArgE_DapE_like2, M20 Peptidases with | 3e-24 | |
| cd03873 | 237 | cd03873, Zinc_peptidase_like, Zinc peptidases M18, | 4e-21 | |
| PRK09133 | 472 | PRK09133, PRK09133, hypothetical protein; Provisio | 9e-18 | |
| PRK08588 | 377 | PRK08588, PRK08588, succinyl-diaminopimelate desuc | 6e-15 | |
| cd05650 | 393 | cd05650, M20_ArgE_DapE_like1, M20 Peptidases with | 2e-13 | |
| PRK06837 | 427 | PRK06837, PRK06837, acetylornithine deacetylase; P | 4e-12 | |
| TIGR01246 | 370 | TIGR01246, dapE_proteo, succinyl-diaminopimelate d | 4e-12 | |
| PRK06915 | 422 | PRK06915, PRK06915, acetylornithine deacetylase; V | 2e-11 | |
| cd03894 | 372 | cd03894, M20_ArgE, M20 Peptidase acetylornithine d | 1e-10 | |
| cd05649 | 376 | cd05649, M20_ArgE_DapE_like4, M20 Peptidases with | 3e-10 | |
| cd03873 | 237 | cd03873, Zinc_peptidase_like, Zinc peptidases M18, | 4e-10 | |
| cd05651 | 342 | cd05651, M20_ArgE_DapE_like5, M20 Peptidases with | 6e-10 | |
| TIGR01892 | 364 | TIGR01892, AcOrn-deacetyl, acetylornithine deacety | 2e-09 | |
| cd05652 | 335 | cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases | 3e-09 | |
| cd02697 | 395 | cd02697, M20_like, M20 Zn-peptidases include exope | 3e-09 | |
| cd05653 | 341 | cd05653, M20_ArgE_LysK, M20 Peptidase acetylornith | 4e-09 | |
| PRK13983 | 400 | PRK13983, PRK13983, diaminopimelate aminotransfera | 6e-09 | |
| cd03891 | 366 | cd03891, M20_DapE_proteobac, M20 Peptidase proteob | 8e-09 | |
| cd05680 | 437 | cd05680, M20_dipept_like_3, Uncharacterized M20 Di | 1e-08 | |
| TIGR01887 | 447 | TIGR01887, dipeptidaselike, dipeptidase, putative | 3e-08 | |
| cd03896 | 359 | cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar | 3e-08 | |
| PRK13013 | 427 | PRK13013, PRK13013, succinyl-diaminopimelate desuc | 5e-08 | |
| PRK13009 | 375 | PRK13009, PRK13009, succinyl-diaminopimelate desuc | 6e-08 | |
| cd08013 | 377 | cd08013, M20_ArgE_DapE_like3, M20 Peptidases with | 2e-07 | |
| cd03891 | 366 | cd03891, M20_DapE_proteobac, M20 Peptidase proteob | 3e-07 | |
| cd08012 | 423 | cd08012, M20_ArgE-related, M20 Peptidases with sim | 3e-07 | |
| PRK07522 | 385 | PRK07522, PRK07522, acetylornithine deacetylase; P | 1e-06 | |
| PRK07205 | 444 | PRK07205, PRK07205, hypothetical protein; Provisio | 2e-06 | |
| PRK08554 | 438 | PRK08554, PRK08554, peptidase; Reviewed | 3e-06 | |
| PRK06446 | 436 | PRK06446, PRK06446, hypothetical protein; Provisio | 5e-06 | |
| PRK08596 | 421 | PRK08596, PRK08596, acetylornithine deacetylase; V | 9e-06 | |
| cd03888 | 453 | cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptida | 1e-05 | |
| cd05676 | 466 | cd05676, M20_dipept_like_CNDP, M20 cytosolic nonsp | 1e-05 | |
| PRK13009 | 375 | PRK13009, PRK13009, succinyl-diaminopimelate desuc | 2e-05 | |
| PRK09104 | 464 | PRK09104, PRK09104, hypothetical protein; Validate | 3e-05 | |
| cd05678 | 466 | cd05678, M20_dipept_like_1, Uncharacterized M20 Di | 4e-05 | |
| cd03888 | 453 | cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptida | 5e-05 | |
| PRK13004 | 399 | PRK13004, PRK13004, peptidase; Reviewed | 7e-05 | |
| cd03885 | 363 | cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox | 9e-05 | |
| PRK07473 | 376 | PRK07473, PRK07473, carboxypeptidase; Provisional | 9e-05 | |
| PRK05111 | 383 | PRK05111, PRK05111, acetylornithine deacetylase; P | 9e-05 | |
| PRK08201 | 456 | PRK08201, PRK08201, hypothetical protein; Provisio | 1e-04 | |
| cd03893 | 428 | cd03893, M20_Dipept_like, M20 Dipeptidases | 2e-04 | |
| cd03885 | 363 | cd03885, M20_CPDG2, M20 Peptidase Glutamate carbox | 4e-04 | |
| TIGR01902 | 336 | TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-ace | 4e-04 | |
| TIGR01886 | 466 | TIGR01886, dipeptidase, dipeptidase PepV | 5e-04 | |
| PRK07318 | 466 | PRK07318, PRK07318, dipeptidase PepV; Reviewed | 7e-04 | |
| cd05681 | 430 | cd05681, M20_dipept_like_4, Uncharacterized M20 Di | 0.001 | |
| cd03894 | 372 | cd03894, M20_ArgE, M20 Peptidase acetylornithine d | 0.004 |
| >gnl|CDD|193524 cd05646, M20_AcylaseI_like, M20 Aminoacylase-I like subfamily | Back alignment and domain information |
|---|
Score = 648 bits (1673), Expect = 0.0
Identities = 235/404 (58%), Positives = 284/404 (70%), Gaps = 14/404 (3%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
+D + RFR YL+I T PNPDY A +F+ QA+ L L + +E KP+++L W GS
Sbjct: 1 EDEAVTRFREYLRIRTVHPNPDYDAAVEFLKRQAKELGLPVKVIEVVPGKPIVVLTWEGS 60
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
+P+LPSILLNSHTDVVP KW+H PF AH D GNI+ARG+QDMKCVG+QYLEAIRRL
Sbjct: 61 DPELPSILLNSHTDVVPVFEEKWTHDPFSAHKDEDGNIYARGAQDMKCVGIQYLEAIRRL 120
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
KASGF+P R+++LSFVPDEEIGGHDG EKF + F LNVG LDEGLAS TE+YR FY
Sbjct: 121 KASGFKPKRTIHLSFVPDEEIGGHDGMEKFVKTEEFKKLNVGFALDEGLASPTEEYRVFY 180
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKA-GLKAEGEV 265
ER PWW+VI A G PGHG+KL DN+A E L K IE FR QF +K+ G G+V
Sbjct: 181 GERSPWWVVITASGTPGHGSKLLDNTAGEKLMKVIEKFMEFREEQFQRLKSNGKLTIGDV 240
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMT 325
SVN+ LK G MN+ PSEAEAGFDIR+PPT D E E+RI E A A R +T
Sbjct: 241 TSVNLTMLKG------GVQMNVVPSEAEAGFDIRIPPTVDLEEFEKRIKEWCAEAGRGVT 294
Query: 326 FEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 385
+EF+Q+ T D SNPWW+ ++AV+K GK KPEIFPA+TD+RY R
Sbjct: 295 YEFEQK-----GPEVDP-TPLDDSNPWWDAFKKAVKKM-GKKLKPEIFPAATDSRYIRAL 347
Query: 386 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429
G+PA+GFSPM NTPILLHDHNEFLN+ +L+GI+IYE II A A
Sbjct: 348 GIPALGFSPMNNTPILLHDHNEFLNEDVFLRGIEIYEKIIPALA 391
|
Peptidase M20 family, Aminoacylase-I like (AcyI-like; Acylase I; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. Acylase I is involved in the hydrolysis of N-acylated or N-acetylated amino acids (except L-aspartate) and is considered as a potential target of antimicrobial agents. Porcine AcyI is also shown to deacetylate certain quorum-sensing N-acylhomoserine lactones, while the rat enzyme has been implicated in degradation of chemotactic peptides of commensal bacteria. Prokaryotic arginine synthesis usually involves the transfer of an acetyl group to glutamate by ornithine acetyltransferase in order to form ornithine. However, Escherichia coli acetylornithine deacetylase (acetylornithinase, ArgE) (EC 3.5.1.16) catalyzes the deacylation of N2-acetyl-L-ornithine to yield ornithine and acetate. Phylogenetic evidence suggests that the clustering of the arg genes in one continuous sequence pattern arose in an ancestor common to Enterobacteriaceae and Vibrionaceae, where ornithine acetyltransferase was lost and replaced by a deacylase. Length = 391 |
| >gnl|CDD|233615 TIGR01880, Ac-peptdase-euk, N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
Score = 611 bits (1576), Expect = 0.0
Identities = 232/411 (56%), Positives = 294/411 (71%), Gaps = 14/411 (3%)
Query: 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLIL 80
SS +D + RFR YL+I+T QPNPDY F++ QA+ L L +T+EF KP+++
Sbjct: 2 SSSKWEEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVV 61
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
L WPGSNP+LPSILLNSHTDVVP W+H PF A D GNI+ARG+QDMKCVG+QYL
Sbjct: 62 LTWPGSNPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYL 121
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+R LKASGF+ R++++SFVPDEEIGGHDG EKFA + F +LN+G LDEGLAS +
Sbjct: 122 EAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALNLGFALDEGLASPDD 181
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLK 260
YR FYAER PWW+V+ A G PGHG+KL +N+AME L KS+ES+RRFR SQF L+++
Sbjct: 182 VYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPD 241
Query: 261 -AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319
A G+V SVN+ LK G S N+ PSEAEAGFDIR+ P+ D E +E R+ E A
Sbjct: 242 LAIGDVTSVNLTKLKGGVQS------NVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCAD 295
Query: 320 ASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA 379
A +T+EF Q G+P++T D SNPWW ++AV K G KPEI P STD+
Sbjct: 296 AGEGVTYEFSQ------HSGKPLVTPHDDSNPWWVAFKDAV-KEMGCTFKPEILPGSTDS 348
Query: 380 RYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
RY R G+PA+GFSPM NTP+LLHDHNEFLN+A +L+GI+IY+++I A AS
Sbjct: 349 RYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQTLISALAS 399
|
This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. Length = 400 |
| >gnl|CDD|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 5e-54
Identities = 108/421 (25%), Positives = 180/421 (42%), Gaps = 64/421 (15%)
Query: 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93
+ ++IDT+ P + T A++++ A+ + ++ + LE A + ++ + PG++P P +
Sbjct: 4 LQELIRIDTTNPPGNETRAAEYLAARLKEAGIDIEILESAPGRANLVARLPGTDPSAPPL 63
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LL H DVVP++P WS PF + G ++ RG+ DMK + L A+RRLK GF+P
Sbjct: 64 LLLGHLDVVPADPEDWSVDPFSGEIKD-GYVYGRGAVDMKGMVAMMLAALRRLKREGFKP 122
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDE-GLASTTED-----YRAF 205
R + L+F DEE GG GA+ ++H +F+ ++E G S + Y
Sbjct: 123 DRDLILAFTADEEAGGEYGAKWLVENHPDLFD--GAEFAINEGGGGSLDDGGKPRLYPIQ 180
Query: 206 YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQF-----DLVKAGLK 260
AE+ WL + A G GHG+ ++A+ L E++ R A +F + +A +
Sbjct: 181 TAEKGYAWLRLTATGPGGHGSMPRPDNAIYRL---AEALARLGAYRFPVRLTETTRAYFE 237
Query: 261 A-----EGEVVSVNMAFLKAGTP---------------------SPN----GFVMNLQPS 290
G + + P G N+ P
Sbjct: 238 QLAEITGGPLDAAMKRLAADPLDEAAAALGSADPLLHATLRTTCVPTMLEAGHKENVIPQ 297
Query: 291 EAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSN 350
EA A D R+ P D E + + + + E RP A+
Sbjct: 298 EATATVDCRILPGVDEEEVLATLKK--LLGDPAVEVEL---------VHRPPAPASPLDT 346
Query: 351 PWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTP---ILLHDHN 406
P ++ +E A+ G P + TD+++FR G+P GFSP+ P H +
Sbjct: 347 PLYDAIEAALAAEDPGAPVVPYMSSGGTDSKFFRALGIPTYGFSPLFLPPDDDSGAHGLD 406
Query: 407 E 407
E
Sbjct: 407 E 407
|
Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 426 |
| >gnl|CDD|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like | Back alignment and domain information |
|---|
Score = 178 bits (455), Expect = 3e-52
Identities = 93/398 (23%), Positives = 151/398 (37%), Gaps = 49/398 (12%)
Query: 38 LQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97
+ I + P + ++ E L + + E A +P ++ G P++LLN
Sbjct: 7 VAIPSVNPPGGEAEVADYLAELLEDLGIPVEVDEVAPGRPNLVATIGGGRG--PTLLLNG 64
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLEAIRRLKASGFQPVR 155
H D VP W++ PF ++ G ++ RG+ DMK M L A+ L +G
Sbjct: 65 HLDTVPVGDEDWTYDPFEGEIED-GRLYGRGACDMKGGLAAM--LAALAELAEAGVPLPG 121
Query: 156 SVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE--DYRAFYAERCPWW 213
V L+ DEE G GA + + IV E A +
Sbjct: 122 RVTLAATVDEETG-SLGARALLERGYALRPDAAIV--------GEPTSLDICIAHKGSLR 172
Query: 214 LVIKARGAPGHGA--KLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV---VSV 268
L + A G HG+ +L N A+ L K I ++ + L AE + ++
Sbjct: 173 LRVTATGKAAHGSRPELGVN-AIYALAKVIGALEELPFA--------LPAEHPLLGPPTL 223
Query: 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEF 328
N+ +K G +N+ P EA DIR+ P D + + + A E
Sbjct: 224 NVGVIKGGE------QVNVVPDEATLELDIRLVPGEDPDEVLAELEALLAQVPPPADVEV 277
Query: 329 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP 388
P TD +P L A+ G+ K P +TDA Y + G+P
Sbjct: 278 DLSVP-------PPPVVTDPDSPLVQALAAAIADVTGRPPKVRGVPGATDASYLAKAGIP 330
Query: 389 AIGFSPMANTPI-LLHDHNEFLNQAEYLKGIDIYESII 425
+ F P + H +E+++ E L+ +IY +
Sbjct: 331 TVVFGP---GDLAQAHQPDEYVSIDELLRAAEIYARLA 365
|
Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) like family of enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this family are mostly bacterial and have been inferred by homology as being related to both, ArgE and DapE. This family also includes N-acetyl-L-citrulline deacetylase (ACDase; acetylcitrulline deacetylase), a unique, novel enzyme found in Xanthomonas campestris, a plant pathogen, in which N-acetyl-L-ornithine is the substrate for transcarbamoylation reaction, and the product is N-acetyl-L-citrulline. Thus, in the arginine biosynthesis pathway, ACDase subsequently catalyzes the hydrolysis of N-acetyl-L-citrulline to acetate and L-citrulline. Length = 365 |
| >gnl|CDD|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40 | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 2e-45
Identities = 80/338 (23%), Positives = 127/338 (37%), Gaps = 32/338 (9%)
Query: 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP 153
LL H DVVP + W+H PF ++ G ++ RG DMK + LEA+R LK +G +
Sbjct: 1 LLRGHMDVVPIGETGWTHPPFSWTIE-DGKMYGRGHDDMKGGLLAALEALRALK-AGGKL 58
Query: 154 VRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL--NVGIVLDEGLASTTEDYRAFYAERCP 211
++ L F PDEE GG +GA + L + G+V + R
Sbjct: 59 KGTIKLLFQPDEEGGGFEGARALIEDGAIFGLHPDQGVVGEPTGLPGGTGIRG-----SL 113
Query: 212 WWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMA 271
+ GA HG+ + +A+ ++ + + S+ VV +
Sbjct: 114 DLFLTVIGGAGHHGSPPHGGNAIALAAAALILLLQLIVSRGVDPLDPA-----VVGI--- 165
Query: 272 FLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQR 331
GT G N EA R + +L E A +
Sbjct: 166 ----GTVGGGGGSNNNVIPEAAFLRGRRRTLDEELRALVEEEEEAIAAGAAAAGVVE--- 218
Query: 332 ASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGL--PA 389
++ RP T + LEEA ++ +PE DA +F E GL P
Sbjct: 219 ---EEEDYRPPYPVTVNDPALVAALEEAAKELGLGP-EPEPSGGGEDAAFFAEVGLGIPM 274
Query: 390 IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKA 427
+GF P H NE+++ + KG + +++
Sbjct: 275 LGFGPGDGALA--HSPNEYVDLDDLEKGAKVLARLLEE 310
|
This family includes a range of zinc metallopeptidases belonging to several families in the peptidase classification. Family M20 are Glutamate carboxypeptidases. Peptidase family M25 contains X-His dipeptidases. Length = 310 |
| >gnl|CDD|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 6e-43
Identities = 99/410 (24%), Positives = 159/410 (38%), Gaps = 19/410 (4%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPL-ILLKWPG 85
D I+E + ++I + + A++ + E L E + E L+ G
Sbjct: 12 LDDILELLKELVRIPSVSAGEE-AEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLG 70
Query: 86 SNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVG--MQYLEA 142
P++LL H DVVP+ W+ PF + G ++ RG+ DMK G L A
Sbjct: 71 GGDGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIK-DGKLYGRGAADMK--GGLAAALYA 127
Query: 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN--VGIVLDEGLASTTE 200
+ LKA+G + V L F DEE GG G + + IV + L S
Sbjct: 128 LSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEPTLESEGG 187
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLK 260
D + WL + +G GH + + + +IE++ DL G
Sbjct: 188 D-IIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGFD 246
Query: 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320
++V + G G +N+ P EAEA DIR+ P D + + + E
Sbjct: 247 GP-LGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAE---- 301
Query: 321 SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR 380
R + + + G P L +P L EA + G + + DAR
Sbjct: 302 LRAIAPKEGVEYEIEPGLGEPPLP-VPGDSPLVAALAEAAEELLGLPPEVSTGGGTHDAR 360
Query: 381 YFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
+F G+PA+ F P L H NE++ + +KG + ++ A
Sbjct: 361 FFARLGIPAVIFGPGDIG--LAHQPNEYVELEDLVKGAKVLARLLYELAE 408
|
Length = 409 |
| >gnl|CDD|193549 cd05674, M20_yscS, M20 Peptidase, carboxypeptidase yscS | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 4e-40
Identities = 113/469 (24%), Positives = 181/469 (38%), Gaps = 101/469 (21%)
Query: 31 IERFRAYLQIDT------SQPNPDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKW 83
ER ++I T + D+ KF + L + L+ N +L W
Sbjct: 1 AERLSGAVRIPTVSYDDMVDEDEDWDPFYKFHDYLEKTYPLVHKALKLEVVNTYGLLYTW 60
Query: 84 PGSNPQLPSILLNSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
GS+P L ILL +H DVVP P +W+H PF H+D G I+ RG+ D K + L
Sbjct: 61 EGSDPSLKPILLMAHQDVVPVNPGTEDEWTHPPFSGHIDD-GYIWGRGALDDKNSLIAIL 119
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+ L A GFQP R++YL+F DEE+GG GA A+ +++ VLDEG A
Sbjct: 120 EAVEALLAEGFQPERTIYLAFGHDEEVGGTRGAAAIAELLERYGVDLAFVLDEGGAILEG 179
Query: 201 DYRAF-------------YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRF 247
+ Y + + + RG GH + ++A+ L ++I R
Sbjct: 180 LFPGVGTPVALIGVAEKGYLD-----VRLTVRGPGGHSSMPPPHTAIGILAEAIT---RL 231
Query: 248 RASQFD-----------------------LVKAGLKAEGEVVSVNMAFLKAGTPSPNGFV 284
+ F L+ A L ++ + + +G+P+ N V
Sbjct: 232 EDNPFPPRLTPPNPAMLQCLAPHSPFAPRLLLANLWLFEPLLKLRLL---SGSPATNALV 288
Query: 285 -------M-------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQ 330
+ N+ P EA A + R+ P E + + + +
Sbjct: 289 RTTTAVTIINGGVKANVLPEEASATVNFRILPGDTVEEVLEHV--------KRAIDDIAV 340
Query: 331 RASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK--LGKPEIFPASTDARYF------ 382
+ L + + P W LL +R+ + P + +TD R++
Sbjct: 341 KYELLLSLSSEPSPVSPTDGPAWELLAGTIRQVYFPDVVVAPYLMTGNTDTRHYWNLTKN 400
Query: 383 --RERGLPAIGFSPMANTPILL---HDHNEFLNQAEYLKGIDIYESIIK 426
R FSP+ T L H NE ++ YL+ I Y +I+
Sbjct: 401 IYR--------FSPIRLTGEDLARIHGVNERISVDNYLRAIRFYYELIQ 441
|
Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group mostly contains proteins that have been uncharacterized to date, but also includes vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis. Length = 441 |
| >gnl|CDD|236208 PRK08262, PRK08262, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-34
Identities = 119/465 (25%), Positives = 185/465 (39%), Gaps = 83/465 (17%)
Query: 27 DDSIIERFRAYLQIDT-SQPNPDYTNASKFI-----LAQA-----EALSLE---SQTLEF 72
+D+ ER ++ T S + +A+ F L ++ AL E +L
Sbjct: 43 EDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSL-- 100
Query: 73 AKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGS 129
L W GS+P L I+L +H DVVP P W+H PF + G ++ RG+
Sbjct: 101 -------LYTWKGSDPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIA-DGYVWGRGA 152
Query: 130 QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189
D K + LEA L A GFQP R++YL+F DEE+GG GA A+ + V +
Sbjct: 153 LDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGL-GARAIAE--LLKERGVRL 209
Query: 190 --VLDEGLASTTEDYRAF--------YAERCPWWLVIKARGAPGHGAKLYDNSAMENLFK 239
VLDEG A T AE+ L + AR GH + +A+ L +
Sbjct: 210 AFVLDEGGAITEGVLPGVKKPVALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLAR 269
Query: 240 SIESVR------RFR---ASQFDLVKAGLKAEGEVVSVNMAFLK-------AGTPSPNGF 283
++ + R R A FD + + VV N+ + A +P
Sbjct: 270 ALTRLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAM 329
Query: 284 V-------M-------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFK 329
+ M N+ P A A + R+ P ES+ + A A + E
Sbjct: 330 LRTTTAPTMLKGSPKDNVLPQRATATVNFRILPGDSVESVLAHVRR--AVADDRVEIEV- 386
Query: 330 QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG-KPEIFPASTDARYFRERGLP 388
L +++TDS + LL +R+ + P + +TD+R++
Sbjct: 387 ----LGGNSEPSPVSSTDS--AAYKLLAATIREVFPDVVVAPYLVVGATDSRHYSGISDN 440
Query: 389 AIGFSPMANTP---ILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
FSP+ +P H NE ++ A Y + I Y +I+ A
Sbjct: 441 VYRFSPLRLSPEDLARFHGTNERISVANYARMIRFYYRLIENAAG 485
|
Length = 486 |
| >gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 105/408 (25%), Positives = 171/408 (41%), Gaps = 72/408 (17%)
Query: 35 RAYLQIDTS----QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQL 90
++IDT+ A++++ + + LE LE A + ++ + PG++P
Sbjct: 6 SELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSR 65
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK-CVGMQYLEAIRRLKAS 149
P++L++ H DVVP+E + WS HPF + G ++ RG+ DMK M L +R L +
Sbjct: 66 PALLVHGHLDVVPAEAADWSVHPFSGEI-RDGYVWGRGAVDMKDMDAM-MLAVVRHLART 123
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFY- 206
G +P R + +FV DEE GG GA D+H +F + I G + T Y
Sbjct: 124 GRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEGVTEAISEVGGFSLTVPGRDRLYL 183
Query: 207 ---AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQF-----DLVKAG 258
AE+ W+ + ARG GHG+ + D++A+ L E+V R ++ V+A
Sbjct: 184 IETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRL---AEAVARIGRHRWPLVLTPTVRAF 240
Query: 259 LKAEGEVV-----------------------------SVNMAFLKAGTPSPNGFVMNLQP 289
L E+ + N LKA G+ +N+ P
Sbjct: 241 LDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKA------GYKVNVIP 294
Query: 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSS 349
AEA D R P + E + E P ++ E+ R + T D
Sbjct: 295 GTAEAVVDGRFLPGREEE-FLATVDELLGP---DVEREWVHR-------DPALETPFDG- 342
Query: 350 NPWWNLLEEAVRKANGKLGK--PEIFPASTDARYFRERGLPAIGFSPM 395
P + + A+ A + P + TDA+ F G+ GF+P+
Sbjct: 343 -PLVDAMNAALL-AEDPGARVVPYMLSGGTDAKAFSRLGIRCYGFAPL 388
|
Length = 426 |
| >gnl|CDD|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 90/425 (21%), Positives = 156/425 (36%), Gaps = 72/425 (16%)
Query: 30 IIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKP---------LI 79
I+E + ++I T P +Y ++F+ E L ++ +E LI
Sbjct: 8 IVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLI 67
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVG 136
+ G+ P + N H DVVP + PF + G ++ RG+ DMK
Sbjct: 68 ARRGSGN----PHLHFNGHYDVVPPGEGWSVNVPFEPKVKD-GKVYGRGASDMKGGIAAL 122
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLA 196
+ E + ++ L+ VPDEE GG G + +++ E
Sbjct: 123 LAAFERLDPAGDG------NIELAIVPDEETGGT-GTGYLVE--EGKVTPDYVIVGEP-- 171
Query: 197 STTEDYRAFYAERCPWWLVIKARGAPGHGA--KLYDNS--AMENLFKSIESVRRFRASQF 252
+ D R W V+K G H + L N+ A + + ++S S++
Sbjct: 172 -SGLDN-ICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKY 229
Query: 253 DLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR 312
+ + V++ ++ GT N+ P D R+ P AE +
Sbjct: 230 EYDDE--RGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDE 281
Query: 313 I---VEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWN--------LLEEAVR 361
+ ++E AP L + I T S + L EA+R
Sbjct: 282 LEALLDEVAP-------------ELGIEVEFEI---TPFSEAFVTDPDSELVKALREAIR 325
Query: 362 KANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421
+ G K I TDAR+F +G+P + + P L H +E++ + K +Y
Sbjct: 326 EVLGVEPKKTISLGGTDARFFGAKGIPTVVYGPGE--LELAHAPDEYVEVKDVEKAAKVY 383
Query: 422 ESIIK 426
E ++K
Sbjct: 384 EEVLK 388
|
Length = 394 |
| >gnl|CDD|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 75/404 (18%), Positives = 155/404 (38%), Gaps = 43/404 (10%)
Query: 31 IERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQ----TLEFAKNKPLILLKWPG 85
+E + + I + + P + + +I + T + K +++K PG
Sbjct: 1 VELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPG 60
Query: 86 SNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + S++ N H DVVP+ + W PF ++ G ++ RG+ DMK + L A++
Sbjct: 61 NGNE-KSLIFNGHYDVVPAGDLELWKTDPFKP-VEKDGKLYGRGATDMKGGLVALLYALK 118
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRA 204
++ +G +P ++ L V DEE G G F + ++ +
Sbjct: 119 AIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDADGVLI-----PEPSGGDNI 172
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263
+ W ++ +G H + +A+ L K I + + E
Sbjct: 173 VIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELN--------------ELEE 218
Query: 264 EVVSVNMAFLKAGTPSPNGFVM------NLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
+ + N G + N V+ N P E D+R+ P + + + ++I+E+
Sbjct: 219 HIYARNSYGFIPGPITFNPGVIKGGDWVNSVPDYCEFSIDVRIIPEENLDEV-KQIIEDV 277
Query: 318 -APASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS 376
S++ + ++ T + LE ++K G + +
Sbjct: 278 VKALSKSDGWLYENEP----VVKWSGPNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGG 333
Query: 377 TDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 420
TDAR+ R+ G+P+I + P H NE+++ ++ +
Sbjct: 334 TDARFLRKAGIPSIVYGPGDLE--TAHQVNEYISIKNLVESTKV 375
|
This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 375 |
| >gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 91/411 (22%), Positives = 157/411 (38%), Gaps = 59/411 (14%)
Query: 39 QIDT-SQPNPDYTNASKFILAQAEALSLESQ-----------TLEFAKNKP-LILLKWPG 85
+I T + P +Y ++++ + E L E + P I++ G
Sbjct: 9 RIPTVNPPGENYEECAEYLKERLEELGFEVEIIEVPDEYLDKYYPRHPGNPRFIVVARLG 68
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
P P + N H DVVP WS PF + G I+ RG+ DMK + A+
Sbjct: 69 EGP--PRLHFNGHYDVVPPGDG-WSVDPFKPVV-KDGRIYGRGASDMKGGIAAAIAALEA 124
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD------SHVFNSLNVGIVLDEGLASTT 199
L +G P V +FVPDEE GG G + +V ++ E +
Sbjct: 125 LAEAGVPPNGPVEAAFVPDEESGGETGTGYLVEEGGIRPDYV--------IIAEP---SG 173
Query: 200 EDYRAFYAERCPWWLVIKARGAPGHG--AKLYDN-----SAM-ENLFKSIESVRRFRASQ 251
D + R W ++ +G HG L N S + L ++++ R S+
Sbjct: 174 LD-NIWIGHRGIVWGEVRVKGKQAHGSTPWLGINAFEKASVIALELQEALKPRLSSRKSK 232
Query: 252 FDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLER 311
++ +V + GT N+ P D R+ P + E + +
Sbjct: 233 YE----YEDERTANPTVTLGGEAEGTGK-----TNIVPGYFRFSIDRRLIPEENLEEVRK 283
Query: 312 RIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPE 371
IV+ A + F+ ++ + T DS L EA+R+ G +
Sbjct: 284 EIVDLLERAEEGIKHRFEVKSLM---IVSAEFTPPDS--SVVEALREAIREVLGVEPRKT 338
Query: 372 IFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422
I P D RY++ +G+ A+ + P L H +E+++ + ++ I +Y
Sbjct: 339 ICPGGLDLRYYKRKGIDAVAYGP--GELDLAHAPDEYVDIEDLVRVIKVYA 387
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 390 |
| >gnl|CDD|193515 cd03895, M20_ArgE_DapE_like2, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 79/351 (22%), Positives = 122/351 (34%), Gaps = 82/351 (23%)
Query: 91 PSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLEAIRRLK 147
S++LN H DVVP+ W+ PF ++ G ++ RG+ DMK L A+ L+
Sbjct: 74 RSLILNGHIDVVPAGDLDLWTRDPFSPVIED-GWLYGRGAGDMKGGLAAA--LFAVEALR 130
Query: 148 ASGFQPVRSVYLSFVPDEEIGGH------------DGA---EKFADSHVFNSLNVGIVLD 192
A+G + V V +EE GG+ D A E VG++
Sbjct: 131 AAGIRLAGDVAFQSVVEEECGGNGALATLLRGYRADAAIIPEPTGLK--IVPAQVGVL-- 186
Query: 193 EGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQ 251
W ++ G P H A Y+ +A+E + I ++R A
Sbjct: 187 --------------------WFRLRVPGRPAHAATRYEGVNAIEKAYALIAALRELEAEW 226
Query: 252 FDLVKAGLKAEGEV-VSVNMAFLKAGT-PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESL 309
V L A+ +++N+ ++ G PS V P E I V P
Sbjct: 227 NARVTHPLFADHPHPINLNVGKIEGGDWPSS---V----PDRCELEGRIGVYPGETPAEA 279
Query: 310 ERRIVEEWAPASRNMTFEFKQRASLHDKFGR---PILT---------ATDSSNPWWNLLE 357
+ I E+ A+ D + P + D +P L
Sbjct: 280 KAEI-EDAI-----------AEAAAADPWLAEHPPEVEWFGFQAEGGELDLDHPLVQALA 327
Query: 358 EAVRKANGKLGKPEIFPASTDARYFRERG-LPAIGFSPMANTPILLHDHNE 407
A G + E A TDAR F G +P + + P H +E
Sbjct: 328 AAHEDVTGTPPEIEAATAGTDARLFVLYGDIPTLVYGPGDTR--NAHGPDE 376
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 399 |
| >gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 4e-21
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)
Query: 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92
+ ++I + + I + E L ++ +E + +++++ G P
Sbjct: 1 LLKELIRIPSVTGEEA--EFADRIARELEELGID---VEVDAHIGNLIVEYGGGEK--PP 53
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
+LL +H DVVP+ + W PF G ++ RG+ D K LEA+R LK +GF+
Sbjct: 54 VLLMAHIDVVPAGDTWWWEFPFAVDTLKDGRLYGRGAADDKGSVAALLEALRDLKENGFK 113
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL-NVGIVLDEG 194
P ++ +F DEE GG GA + VLD G
Sbjct: 114 PKGTIIFAFTADEEAGGSAGAGLALWLLEEGLKVDYLFVLDGG 156
|
Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database, including the MH clan, which contains 4 families (M18, M20, M28, M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase, peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. However, several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However, only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues). Length = 237 |
| >gnl|CDD|236388 PRK09133, PRK09133, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 9e-18
Identities = 87/401 (21%), Positives = 153/401 (38%), Gaps = 72/401 (17%)
Query: 79 ILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQ 138
++ + G++P+ P ILL +H DVV ++ W+ PF ++ G + RG+ D K
Sbjct: 91 LVARLRGTDPKKP-ILLLAHMDVVEAKREDWTRDPF-KLVEENGYFYGRGTSDDKADAAI 148
Query: 139 YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198
++ + RLK GF+P R + L+ DEE +G A++H ++ L+EG T
Sbjct: 149 WVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDL-IDAEFALNEGGGGT 207
Query: 199 TED------YRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVR--RFRAS 250
++ E+ ++ GH ++ ++A+ L ++ + RF
Sbjct: 208 LDEDGKPVLLTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPVM 267
Query: 251 QFDLVKAGLKAEGEVVSVNMA-----FLKAGT-----------PSPNGFV---------- 284
D+ +A K + + +A F PS N +
Sbjct: 268 LNDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLE 327
Query: 285 ----MNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGR 340
N P A A + R+ P E++ + + A +
Sbjct: 328 GGHAENALPQRATANVNCRIFPGDTIEAVRATLKQ--VVADPAIK--------------- 370
Query: 341 PILTATDSS----NPWWNLLEEAVRKANGKL--GKPEIFPA----STDARYFRERGLPAI 390
I D S +P + +AV K + G P + P+ +TD RY R G+P
Sbjct: 371 -ITRIGDPSPSPASPLRPDIMKAVEKLTAAMWPGVP-VIPSMSTGATDGRYLRAAGIPTY 428
Query: 391 GFSPMANTPILLHDH--NEFLNQAEYLKGIDIYESIIKAYA 429
G S + P H NE + A + +G D ++K A
Sbjct: 429 GVSGLFGDPDDTFAHGLNERIPVASFYEGRDFLYELVKDLA 469
|
Length = 472 |
| >gnl|CDD|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 6e-15
Identities = 86/353 (24%), Positives = 142/353 (40%), Gaps = 52/353 (14%)
Query: 91 PSILLNSHTDVV-PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
P + L+ H DVV + KW++ PF + G ++ RG+ DMK + A+ LK
Sbjct: 60 PVLALSGHMDVVAAGDVDKWTYDPFELT-EKDGKLYGRGATDMKSGLAALVIAMIELKEQ 118
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAER 209
G ++ L EE+G GA++ + + L+ +++ E + YA +
Sbjct: 119 GQLLNGTIRLLATAGEEVGEL-GAKQLTEKGYADDLD-ALIIGE-----PSGHGIVYAHK 171
Query: 210 CPWWLVIKARGAPGHGAKLYDNSAMENL-FKSIESVRRFRASQ---FDLVKAGLKAEGEV 265
+ + G H S+M L +I+ + F Q FD +K G +
Sbjct: 172 GSMDYKVTSTGKAAH-------SSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGL 224
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERR---IVEEW-APAS 321
V G +N P EAE F+IR P D + + I+ E +
Sbjct: 225 THVVTII-NGGEQ------VNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGA 277
Query: 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP---EIFPASTD 378
++ + + RP+ + DS L++ A A +G+ P +TD
Sbjct: 278 AQLSLDI-----YSNH--RPVASDKDSK-----LVQLAKDVAKSYVGQDIPLSAIPGATD 325
Query: 379 ARYFRERG--LPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428
A F ++ P I F P T H +E++ + YLK IDIY+ II Y
Sbjct: 326 ASSFLKKKPDFPVIIFGPGNNLTA---HQVDEYVEKDMYLKFIDIYKEIIIQY 375
|
Length = 377 |
| >gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 82/354 (23%), Positives = 131/354 (37%), Gaps = 57/354 (16%)
Query: 76 KPLILLKWPGSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQD--M 132
+P I+ + PG++ ++ + SH DVVP + S W PF + I+ RG +D
Sbjct: 59 RPNIVARIPGADTS-RTLWIISHMDVVPPGDLSLWKTDPFKPVVKG-DKIYGRGVEDNGQ 116
Query: 133 KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNVGIV 190
V A + LK G P ++ L+FV DEE G G + H F ++ +V
Sbjct: 117 AIVSSLL--AAKALKDLGITPKYNLGLAFVADEETGSRYGIKYLLKKHPELFKKDDLILV 174
Query: 191 LDEGLA--STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRF 247
D G S E AE+ WL + +G H + + +A K I ++ R
Sbjct: 175 PDAGNPDGSMIE-----IAEKSILWLKVTVKGKQCHASTPEEGINAHRAASKLILALDRL 229
Query: 248 RASQFDLVKAGLKAEGEVVSVNMAFL---------KAGTPSPNGFVMNLQPSEAEAGFDI 298
+F+ + F K N +N P FD
Sbjct: 230 LHEKFN-------------KRDPLFDPPYSTFEPTKKEANVDN---INTIPGRDVFYFDC 273
Query: 299 RVPPTTDAESLE---RRIVEEWAPASR-NMTFEFKQRASLHDKFGRPILTATDSSNPWWN 354
R+ P + + R I +E + E QR T +
Sbjct: 274 RILPEYSLDEVLETVREIAKEVEEKYGVKIEVEVVQREDAPP--------PTPPDSEIVR 325
Query: 355 LLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF 408
L+ A+++ G KP T A + R +G+PA+ +S + T H NE+
Sbjct: 326 RLKRAIKEVRGIEPKPGGIGGGTVAAFLRRKGIPAVVWSTLDETA---HQPNEY 376
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 393 |
| >gnl|CDD|180721 PRK06837, PRK06837, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 86/380 (22%), Positives = 144/380 (37%), Gaps = 85/380 (22%)
Query: 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKC--VGMQYLE 141
+ S++L H DVVP P WS PF + G ++ RG+ DMK M +
Sbjct: 92 PAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVI-VDGWMYGRGAADMKAGLAAMLF-- 148
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
A+ L+A+G P V+ V +EE G +GA ++L G D L
Sbjct: 149 ALDALRAAGLAPAARVHFQSVIEEESTG-NGA--------LSTLQRGYRADACLIPEPTG 199
Query: 202 YRAFYAERCPWWLVIKARGAPGH------GAKLYDNSAMENLFKSIESVRRFRASQFDLV 255
+ A+ W ++ RGAP H GA +A++ + I+++R A +++
Sbjct: 200 EKLVRAQVGVIWFRLRVRGAPVHVREAGTGA-----NAIDAAYHLIQALRELEA-EWNAR 253
Query: 256 KAGLKAEGEV---VSVNMAFLKAG-----TPSPNGFVMNLQPSEAEAGFDIRVP--PTTD 305
KA +V ++ N+ +K G P A D R+ P
Sbjct: 254 KASDPHFEDVPHPINFNVGIIKGGDWASSVP-------------AWCDLDCRIAIYPGVT 300
Query: 306 AESLERRIVEEWAPASRNMTFEFKQRASLHDKFGR---PILTATDSSNPWWNL-----LE 357
A + I A A+R+ D+F P + + + L E
Sbjct: 301 AADAQAEIEACLAAAARD------------DRFLSNNPPEVVWSGFLAEGYVLEPGSEAE 348
Query: 358 EAVRKA-NGKLGKP---EIFPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQA 412
A+ +A G P + A TD R++ G+PA+ + P H +E ++
Sbjct: 349 AALARAHAAVFGGPLRSFVTTAYTDTRFYGLYYGIPALCYGPSGEGI---HGFDERVD-- 403
Query: 413 EYLKGIDIYESIIKAYASYV 432
++ + K A +V
Sbjct: 404 -----LESVRKVTKTIALFV 418
|
Length = 427 |
| >gnl|CDD|162269 TIGR01246, dapE_proteo, succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 87/402 (21%), Positives = 146/402 (36%), Gaps = 71/402 (17%)
Query: 47 PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106
P+ I + E L E + + F K L + G P + HTDVVP+ P
Sbjct: 16 PNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGTGE----PVLAFAGHTDVVPAGP 71
Query: 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL--KASGFQPVRSVYLSFVP 163
+WS PF G ++ RG+ DMK ++ A R K + S+ L
Sbjct: 72 EEQWSSPPFEPVERD-GKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKG--SISLLITS 128
Query: 164 DEEIGGHDGAEKFAD--------------SHVFNSLNVGIVLDEG-LASTTEDYRAFYAE 208
DEE DG +K + + +G V+ G S T +
Sbjct: 129 DEEGTAIDGTKKVVETLMARDELIDYCIVGEPSSVKKLGDVIKNGRRGSITGN------- 181
Query: 209 RCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV--- 265
+ +G GH A Y + A + K+ ++ A ++D EG
Sbjct: 182 -------LTIKGIQGHVA--YPHLANNPIHKAAPALAELTAIKWD--------EGNEFFP 224
Query: 266 -VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNM 324
S+ + + AGT N+ P E F++R E L++R+ +
Sbjct: 225 PTSLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQHGLDY 279
Query: 325 TFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE 384
E+ G P LT + EA+ + NG + ++D R+
Sbjct: 280 DLEWSLS-------GEPFLTND---GKLIDKAREAIEETNGIKPELSTGGGTSDGRFIAL 329
Query: 385 RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426
G + F P+ T +H NE ++ + K D+Y+ +++
Sbjct: 330 MGAEVVEFGPVNAT---IHKVNECVSIEDLEKLSDVYQDLLE 368
|
This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum , and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason [Amino acid biosynthesis, Aspartate family]. Length = 370 |
| >gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 92 SILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
S++LN H DVVP + ++W HHP+ + G I+ RG+ DMK + L A+ L SG
Sbjct: 95 SMILNGHIDVVPEGDVNQWDHHPYSGEV-IGGRIYGRGTTDMKGGNVALLLAMEALIESG 153
Query: 151 FQPVRSVYLSFVPDEEIGG 169
+ V V +EE GG
Sbjct: 154 IELKGDVIFQSVIEEESGG 172
|
Length = 422 |
| >gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
++L+ HTDVVP + +WS PF + G ++ RG+ DMK C L A L
Sbjct: 58 GGLVLSGHTDVVPVDGQRWSSDPFTLT-ERDGRLYGRGTCDMKGFLACA----LAAAPEL 112
Query: 147 KASGFQPVRSVYLSFVPDEEIG 168
A+ + R ++L+F DEE+G
Sbjct: 113 AAADLK--RPLHLAFSYDEEVG 132
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16) subfamily. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 372 |
| >gnl|CDD|193526 cd05649, M20_ArgE_DapE_like4, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 74/366 (20%), Positives = 129/366 (35%), Gaps = 60/366 (16%)
Query: 85 GSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQDMK--CVGMQYLE 141
G IL ++H D VP + +W PFG ++ G I+ RG+ DMK M Y
Sbjct: 49 GGGKP-KIILFDAHIDTVPVGDREQWRFDPFGGEIE-DGRIYGRGTSDMKGGLAAMVY-- 104
Query: 142 AIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG---IVLDEGLAST 198
A + LK G ++Y++ EE +G A ++ + +V+ E +
Sbjct: 105 AAKILKDLGLDFAGTIYVTGTVHEED--CEG---VAWRYIIEEDGIKPDFVVIGE--PTD 157
Query: 199 TEDYRAFYAERCPWWLVIKARGAPGHGA--KLYDNSAMENLFKSIESVRRFRASQFDLVK 256
R +R + ++ +G H + + N+ + + + I +R + ++
Sbjct: 158 LNIKR---GQRGRAEIRVETKGRSAHSSAPERGVNAIYK-MARIITELRELNPPEHPVLG 213
Query: 257 AGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
G + V F PS + P D R+ ES+ +I +
Sbjct: 214 KGT------LVVTDIFSS--PPS-----ASAVPDYCRITLDRRLLVGETRESVLAQIRDL 260
Query: 317 WAPASRNMTFEFKQRASLHDKFGRPILTATDSSN----PWWNL---------LEEAVRKA 363
A + + S+ P T P W EA +
Sbjct: 261 KAVK------GLEAKVSVA-TGKEPSYTGEVIEAERYFPAWLNEEDHELVKAALEAYKAL 313
Query: 364 NGKLGKPEIFPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422
G + + ST+ + E G+P IGF P L H NE++ + +K Y
Sbjct: 314 FGD-PLIDKWRFSTNGSHIAGEAGIPTIGFGPGDE--ELAHTPNEYVELEQLVKAAAGYA 370
Query: 423 SIIKAY 428
+I
Sbjct: 371 AIPLEL 376
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly bacterial and archaeal, and have been inferred by homology as being related to both ArgE and DapE. Length = 376 |
| >gnl|CDD|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42 | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 350 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 409
P+ + L A GK TD RYF E G+P + P H NE +
Sbjct: 168 TPFVDALLAAAEDVGGKPVPAISIGGGTDGRYFAELGIPGVTLGPPGTA--NYHSPNETV 225
Query: 410 NQAEYLKGIDIY 421
+ K I +
Sbjct: 226 SLESLEKAIKVL 237
|
Zinc peptidases play vital roles in metabolic and signaling pathways throughout all kingdoms of life. This family corresponds to several clans in the MEROPS database, including the MH clan, which contains 4 families (M18, M20, M28, M42). The peptidase M20 family includes carboxypeptidases such as the glutamate carboxypeptidase from Pseudomonas, the thermostable carboxypeptidase Ss1 of broad specificity from archaea and yeast Gly-X carboxypeptidase. The dipeptidases include bacterial dipeptidase, peptidase V (PepV), a eukaryotic, non-specific dipeptidase, and two Xaa-His dipeptidases (carnosinases). There is also the bacterial aminopeptidase, peptidase T (PepT) that acts only on tripeptide substrates and has therefore been termed a tripeptidase. Peptidase family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. However, several enzymes in this family utilize other first row transition metal ions such as cobalt and manganese. Each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. The aminopeptidases in this family are also called bacterial leucyl aminopeptidases, but are able to release a variety of N-terminal amino acids. IAP aminopeptidase and aminopeptidase Y preferentially release basic amino acids while glutamate carboxypeptidase II preferentially releases C-terminal glutamates. Glutamate carbxypeptidase II and plasma glutamate carboxypeptidase hydrolyze dipeptides. Peptidase families M18 and M42 contain metalloaminopeptidases. M18 is widely distributed in bacteria and eukaryotes. However, only yeast aminopeptidase I and mammalian aspartyl aminopeptidase have been characterized in detail. Some of M42 (also known as glutamyl aminopeptidase) enzymes exhibit aminopeptidase specificity while others also have acylaminoacylpeptidase activity (i.e. hydrolysis of acylated N-terminal residues). Length = 237 |
| >gnl|CDD|193528 cd05651, M20_ArgE_DapE_like5, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 86/342 (25%), Positives = 136/342 (39%), Gaps = 57/342 (16%)
Query: 88 PQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL 146
P+ILLNSH D V P+ W+ PF ++ G ++ GS D + L L
Sbjct: 54 EGKPTILLNSHHDTVK--PNAGWTRDPFEP-VEEGGKLYGLGSNDAGASLVSLLATFLHL 110
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFY 206
+ G ++ +EEI G +G E L++ IV TE A
Sbjct: 111 YSEGPLKYNLIFA-ASAEEEISGKNGLESLLPE--LPPLDLAIV-----GEPTEMQPAI- 161
Query: 207 AERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV- 265
AE+ L A+G GH A+ ++A ++K+++ ++ R +F L G V
Sbjct: 162 AEKGLLVLDCTAKGKAGHAARNEGDNA---IYKALDDIQWLRNFRFPKKSELL---GPVK 215
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMT 325
++V ++AGT N+ P DIR TT+A + E I E N+
Sbjct: 216 MTVTQ--IQAGTQH------NVVPDSCTFTVDIR---TTEAYTNE-EIFEIIR---GNLK 260
Query: 326 FEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 385
E K R+ R +A +P V+ A P P +D
Sbjct: 261 SEIKPRSF------RLNSSAIPLDHPI-------VQAAKALGRTPYGSPTLSDQALM--- 304
Query: 386 GLPA--IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425
P+ IG + + H +EF+ +E +GIDIY ++
Sbjct: 305 PFPSVKIGPGDSSRS----HTADEFIYLSEIEEGIDIYIQLL 342
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 342 |
| >gnl|CDD|130947 TIGR01892, AcOrn-deacetyl, acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 69/309 (22%), Positives = 122/309 (39%), Gaps = 41/309 (13%)
Query: 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152
+ L+ HTDVVP + + W+ PF + G ++ RG+ DMK L A L A +
Sbjct: 61 LALSGHTDVVPYDDAAWTRDPFRLT-EKDGRLYGRGTCDMKGFLACALAAAPDLAAEQLK 119
Query: 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPW 212
+ ++L+ DEE+G GA K ++ ++ E A +
Sbjct: 120 --KPLHLALTADEEVGCT-GAPKMIEAGAGRPR--HAIIGE-----PTRLIPVRAHKGYA 169
Query: 213 WLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV--VSVNM 270
+ RG GH + Y +S + +F++ ++R L++ L ++N+
Sbjct: 170 SAEVTVRGRSGHSS--YPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNI 227
Query: 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQ 330
++ G N+ P E F+ R P D E L +++E A A F+
Sbjct: 228 GVIQGGKAV------NIIPGACEFVFEWRPIPGMDPEELL-QLLETIAQALVRDEPGFEV 280
Query: 331 RASLHDKFGRPILTATDSSNPWWNL-----LEEAVRKANGKLGKPEIFPASTDARYFRER 385
+ + S++P N L + + +G PE+ T+A F+E
Sbjct: 281 QIEVV------------STDPGVNTEPDAELVAFLEELSGN--APEVVSYGTEAPQFQEL 326
Query: 386 GLPAIGFSP 394
G A+ P
Sbjct: 327 GAEAVVCGP 335
|
This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes [Amino acid biosynthesis, Glutamate family]. Length = 364 |
| >gnl|CDD|193529 cd05652, M20_ArgE_DapE_like_fungal, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 67/257 (26%), Positives = 96/257 (37%), Gaps = 45/257 (17%)
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK-CVGMQ 138
+ +PGS Q P +LL SH D VP PF + I+ RGS D K V Q
Sbjct: 49 VYAYPGSKRQ-PRVLLTSHIDTVP---------PFIPYSIDGDFIYGRGSVDAKGSVAAQ 98
Query: 139 YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS-HVFNSLNVGIVLDEGLAS 197
+ A L A G V L FV EE GG DG + D + ++ G + LAS
Sbjct: 99 II-AAEELLAEGEIGEGDVGLLFVVGEETGG-DGMKAANDLGLGWEAVIFGEPTELKLAS 156
Query: 198 TTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKS-IESVRRFRASQFDLVK 256
+ F + A+G H S L S IE + A L
Sbjct: 157 GHKGALRF---------NVTAKGKAAH-------SGYPELGISAIEKLLEALA---KLRD 197
Query: 257 AGLKAEGEV--VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE--RR 312
A L + + ++N+ ++ G + N+ P+ AEA IR+ E + R
Sbjct: 198 ADLPSSELLGPTTLNIGLIEGGVAA------NVIPAHAEASVAIRL-AADPPEVKDIVER 250
Query: 313 IVEEWAPASRNMTFEFK 329
V + F +
Sbjct: 251 AVAGILTEDIELVFTSE 267
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal, and have been inferred by homology as being related to both ArgE and DapE. Length = 335 |
| >gnl|CDD|193494 cd02697, M20_like, M20 Zn-peptidases include exopeptidases | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 94/344 (27%), Positives = 131/344 (38%), Gaps = 51/344 (14%)
Query: 58 AQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGA 116
A A +ES T LI+ G P P++ LN+H DVVP P W+H P+GA
Sbjct: 50 AVVRAAGMESAT-------NLIVRHRFGDGP--PTVALNAHGDVVP--PGGGWTHDPYGA 98
Query: 117 HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176
++ G ++ RG+ K Y A+R L ASG +V L F DEE GG G
Sbjct: 99 EIE-DGWLYGRGAAVSKSDFATYTFALRALIASGAPLNGTVELHFTYDEETGGEAGP--- 154
Query: 177 ADSHVFNSLNVGIVLDEGLA------STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD 230
G +LD+GL S Y A L + RG H A
Sbjct: 155 -----------GWLLDQGLTRPDYAISAGFSYGVVTAHNGCLHLEVTVRGKSAHAAWPDT 203
Query: 231 N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
A+E K + ++ +R + A V + L G S G N+ P
Sbjct: 204 GCDALEAATKLLNALYAYRDTLAQRTSA-------VPGIGSPTLVVGLIS-GGINTNVVP 255
Query: 290 SEAEAGFDIRVPPTTDAESLE---RRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTAT 346
D R+ P E +E R ++E +T + K R L RP L
Sbjct: 256 DRVTFRLDRRIIPEEQPEEVEAELRAVIERAVRGVPGITVDVK-RILL----ARP-LVPL 309
Query: 347 DSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI 390
S P L++ G+ P TDAR + E G+P +
Sbjct: 310 PGSAPLVAALQQQAEAVFGEPVPAVGVPLYTDARLYAEAGIPTV 353
|
Peptidase M20 family; uncharacterized subfamily. These hypothetical proteins have been inferred by homology to be exopeptidases: carboxypeptidases, dipeptidases and a specialized aminopeptidase. In general, the peptidase hydrolyzes the late products of protein degradation in order to complete the conversion of proteins to free amino acids. Members of this subfamily may bind metal ions such as zinc. Length = 395 |
| >gnl|CDD|193530 cd05653, M20_ArgE_LysK, M20 Peptidase acetylornithine deacetylase/acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 90/401 (22%), Positives = 138/401 (34%), Gaps = 106/401 (26%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE-PSKWS 110
++F+ + L E+ E A N ++ +K G P++LL H D VP P +
Sbjct: 23 LAEFLAEIMKELGFEAWIDE-AGN--VVAVKGSGG----PTVLLLGHIDTVPGFIPVRIE 75
Query: 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
G ++ RG+ D K + A R R V + +EE
Sbjct: 76 ----------GGVLYGRGAVDAKGPLAAMILAAARANEPL--GCRLV-VIGAVEEESSSK 122
Query: 171 DGAEKFADSHV-FNSLNVGIVLDE--GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK 227
GA DS+ + + +G E G T YR L I+ G GH +
Sbjct: 123 -GARHLRDSYPRPDYVIIG----EPSGWDGITLGYRGRL------LLKIRCEGPSGHSSG 171
Query: 228 LYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287
+N A+E+L + +++ E SV +K+GT SPNG
Sbjct: 172 PEEN-AIEDLIDAWNAIKE---------WLENYNSFEFDSVTPTLIKSGT-SPNG----- 215
Query: 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATD 347
P EAE D+R+PP E L + + LT D
Sbjct: 216 TPEEAELTIDVRLPPGVSPEEL---------------------LSEIAGLAPGCELTVLD 254
Query: 348 S--------SNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG------------L 387
+NP A+RK GKP R R+ G
Sbjct: 255 RTPPVRVDRNNPLVRAFRRAIRKQG---GKP---------RLVRKTGTSDMNVLAPAWTC 302
Query: 388 PAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428
P + + P + L H NE ++ AEY + I + ++
Sbjct: 303 PIVAYGPGDSR--LDHTPNEHIDLAEYERAIKVLVRALEEL 341
|
Peptidase M20 family, acetylornithine deacetylase (ArgE)/acetyl-lysine deacetylase (LysK) subfamily. Proteins in this subfamily are mainly archaeal with related bacterial species and are deacetylases with specificity for both N-acetyl-ornithine and N-acetyl-lysine found within a lysine biosynthesis operon. ArgE catalyzes the conversion of N-acetylornithine to ornithine, while LysK, a homolog of ArgE, has deacetylating activities for both N-acetyllysine and N-acetylornithine at almost equal efficiency. These results suggest that LysK which may share an ancestor with ArgE functions not only for lysine biosynthesis, but also for arginine biosynthesis in species such as Thermus thermophilus. The substrate specificity of ArgE is quite broad in that several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 341 |
| >gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 83/361 (22%), Positives = 135/361 (37%), Gaps = 73/361 (20%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQD--MK 133
P I+ K PG + + ++ + SH DVVP + S W PF + G I+ RGS+D
Sbjct: 64 PNIVAKIPGGDGKR-TLWIISHMDVVPPGDLSLWETDPFKPVVKD-GKIYGRGSEDNGQG 121
Query: 134 CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVL 191
V A++ L G +P ++ L+FV DEE G G + H +F ++ +V
Sbjct: 122 IVSSLL--ALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVP 179
Query: 192 DEGLA--STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMEN-------LFKSIE 242
D G S E AE+ WL +G H S EN
Sbjct: 180 DAGNPDGSFIE-----IAEKSILWLKFTVKGKQCHA------STPENGINAHRAAADFAL 228
Query: 243 SVRRFRASQFDLVKAGLKAEGEVVSVNMA-F----LKAGTPSPNGFVMNLQPSEAEAGFD 297
+ +F+ A+ + + F +A + N P FD
Sbjct: 229 ELDEALHEKFN-------AKDPLFDPPYSTFEPTKKEANVDNINTI-----PGRDVFYFD 276
Query: 298 IRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPIL----------TATD 347
RV P D + + + I + + EF++ ++G I T
Sbjct: 277 CRVLPDYDLDEVLKDI--------KEIADEFEE------EYGVKIEVEIVQREQAPPPTP 322
Query: 348 SSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNE 407
+ L+ A+++ G K T A + R++G PA+ +S + T H NE
Sbjct: 323 PDSEIVKKLKRAIKEVRGIEPKVGGIGGGTVAAFLRKKGYPAVVWSTLDETA---HQPNE 379
Query: 408 F 408
+
Sbjct: 380 Y 380
|
Length = 400 |
| >gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 8e-09
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P + HTDVVP + WS PF + G ++ RG+ DMK +L A R
Sbjct: 55 PHLCFAGHTDVVPPGDEEGWSSPPFSPTIK-DGMLYGRGAADMKGGIAA----FLAAAER 109
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDG 172
A S+ DEE +G
Sbjct: 110 FVAEYPDHKGSISFLITSDEEGPAING 136
|
Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366 |
| >gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCV 135
P++ +W P P++L+ H DV P +P W PF + G I+ARG+ D K
Sbjct: 51 PIVYAEWLH-APGAPTVLVYGHYDVQPPDPLELWESPPFEPTIR-DGRIYARGASDDKGQ 108
Query: 136 GMQYLEAIRR-LKASGFQPVRSVYLSFVPDEEIGG 169
+L+A+ L +G PV +L +EEIG
Sbjct: 109 VFTHLKALEALLAVTGRLPVNVKFL-IEGEEEIGS 142
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 437 |
| >gnl|CDD|233618 TIGR01887, dipeptidaselike, dipeptidase, putative | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 75/388 (19%), Positives = 121/388 (31%), Gaps = 83/388 (21%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP W+ PF + G I+ RG+ D K + A++ LK G + + +
Sbjct: 75 HLDVVP-AGDGWTSPPFEPTIK-DGRIYGRGTLDDKGPTIAAYYAMKILKELGLKLKKKI 132
Query: 158 -----------------YLS--------FVPDEE---IGGHDGAEKF------------- 176
Y F PD E I G G
Sbjct: 133 RFIFGTDEESGWKCIDYYFEHEEMPDIGFTPDAEFPIIYGEKGITTLEIKFKDDTEGDVV 192
Query: 177 --------ADSHVFNSLNVGIVLDEGLASTTEDYRAFYA-------ERCPWWLVIKARGA 221
A + V + I + + F A E L I G
Sbjct: 193 LESFKAGEAYNMVPDHATAVISGKKLTEVEQLKFVFFIAKELEGDFEVNDGTLTITLEGK 252
Query: 222 PGHGA--KLYDNSAMENLFKSIESVRRFRAS----QFDLVKAGLKAEGEVVSVNMAFLKA 275
HG+ + N+A L + + + QF GE + + +
Sbjct: 253 SAHGSAPEKGINAATY-LALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIKFHDDVS 311
Query: 276 GTPSPNGFVMNLQPSEA-EAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASL 334
G + N V++ + +EA G ++R P D ++ + E A S +
Sbjct: 312 GDLTMNVGVIDYENAEAGLIGLNVRYPVGNDPDT---MLKNELAKESGVVEVTL------ 362
Query: 335 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSP 394
+ + +P+ D P L + K G G+P T AR G + F
Sbjct: 363 -NGYLKPLYVPKDD--PLVQTLMKVYEKQTGDEGEPVAIGGGTYARLM-PNG---VAFGA 415
Query: 395 M-ANTPILLHDHNEFLNQAEYLKGIDIY 421
+ +H NE++ + L IY
Sbjct: 416 LFPGEEDTMHQANEYIMIDDLLLATAIY 443
|
This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. Length = 447 |
| >gnl|CDD|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 70/357 (19%), Positives = 119/357 (33%), Gaps = 73/357 (20%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111
++++ + L LE ++ N ++ + GS PS+LL++H D V E + +
Sbjct: 20 RAEYVAERLRELGLEDVYIDERGN---VIGRRKGSGG-GPSLLLSAHLDTVFPEGTDVT- 74
Query: 112 HPFGAHLDSQGNIFARGSQDMKCVGMQ-YLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
+ G ++ G D G+ L A R L+A+G + + EE G
Sbjct: 75 ----VRREG-GRLYGPGIGDDTA-GLAALLAAARALRAAGIELAGDLLFVANVGEEGLGD 128
Query: 171 DGAEKF--------ADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA 221
+ D + + + G + G+ S I G
Sbjct: 129 LRGVRHLFDHGGVAIDGFIAIDGTDPGRITHGGVGSR--------------RFRITFSGP 174
Query: 222 PGHGAKL-YDNSAMENLFKSIESVRRFRASQFDLVK--AGLKAEGEVVSVNMAFLKAGTP 278
GH SA+ L ++I + +R G G SVN
Sbjct: 175 GGHSWGAFGHPSAIHALGRAIAELADWRVPSAPKTTFNVGRIGGGT--SVN-------AI 225
Query: 279 SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLER---RIVEEWAPASRNMTFEFKQRASLH 335
+EAE D+R ++ER V E + ++ + +
Sbjct: 226 ----------AAEAEMELDLRSNSRDALAAVEREFLAAVAEARARAPGVSLDIEPIGD-- 273
Query: 336 DKFGRPILTATDSSNPWWNLLEEAVRKANGKLG--KPEIFPASTDARYFRERGLPAI 390
RP S L +A R A +G +P + STDA G+PA+
Sbjct: 274 ----RPAGETPPDS-----PLVQAARAAWRAVGGAEPVLSSGSTDANVPLSLGIPAV 321
|
Peptidase M20 family, Poly(aspartic acid) hydrolase (PAA hydrolase)-like subfamily. PAA hydrolase enzymes are involved in alpha,beta-poly(D,L-aspartic acid) (tPAA) biodegradation. PAA is being extensively studied as a replacement for commercial polycarboxylate components since it can be degraded by enzymes from isolated tPAA degrading bacteria. Thus far, two types of PAA degrading bacteria (Sphingomonas sp. KT-1 and Pedobacter sp. KP-2) have been investigated in detail; the former can completely degrade tPAA of low-molecular weights below 5000, while the latter can degrade high molecular weight tPAA to release oligo(aspartic acid) (OAA) as a product, suggesting two kinds of PAA degrading enzymes. It has been shown that PAA hydrolase-1 from Sphingomonas sp. KT-1 hydrolyzes beta,beta-aspartic acid units in tPAA to produce OAA, and it is suggested that PAA hydrolase-2 hydrolyzes OAA to aspartic acid. Length = 359 |
| >gnl|CDD|237268 PRK13013, PRK13013, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
+ NSH DVV W+ PFG + G I+ RG+ DMK + A A
Sbjct: 85 DCVHFNSHHDVVEVG-HGWTRDPFGGEVKD-GRIYGRGACDMKGGLAASIIAAEAFLAVY 142
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC 210
S+ +S DEE GG G A+ F+ V V+ + R R
Sbjct: 143 PDFAGSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVI---IPEPLNKDRICLGHRG 199
Query: 211 PWWLVIKARGAPGHGA 226
WW ++ RG HG+
Sbjct: 200 VWWAEVETRGRIAHGS 215
|
Length = 427 |
| >gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 6e-08
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK 133
P + HTDVVP + W+ PF + G ++ RG+ DMK
Sbjct: 59 PHLCFAGHTDVVPPGDLEAWTSPPFEPTIR-DGMLYGRGAADMK 101
|
Length = 375 |
| >gnl|CDD|193561 cd08013, M20_ArgE_DapE_like3, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 28 DSIIERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFAKNKPLIL-- 80
D +++ + ++ID+S P + +I +E LE +P ++
Sbjct: 1 DDVVDLTQTLVRIDSSNPTLGPGGAGEAEIAAYIADWLRHRGIEVHRLEGTPGRPSVVGV 60
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK---CVGM 137
L+ G S++LN H D V + P + + G ++ RG+ DMK M
Sbjct: 61 LRGTGGGR---SLMLNGHIDTVS--LGGYEGDPLSGRI-ADGRLYGRGAYDMKGGLAAMM 114
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
L ++ G V L+ V DEE
Sbjct: 115 AALATAKKSPLRG-----DVILAAVADEE 138
|
Peptidase M20 family, Uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. This group includes the hypothetical protein ygeY from Escherichia coli, a putative deacetylase, but many in this subfamily are classified as unassigned peptidases. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are mostly fungal and bacterial, and have been inferred by homology as being related to both ArgE and DapE. Length = 377 |
| >gnl|CDD|193511 cd03891, M20_DapE_proteobac, M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 23/145 (15%)
Query: 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTA 345
N+ P E EA F+IR AESL+ RI + T E++ G P LT
Sbjct: 240 NVIPGELEAMFNIRFSTEHTAESLKARIEAILDKHGLDYTLEWELS-------GEPFLTK 292
Query: 346 TDSSNPWWNLLEEAVRKANGKLGKPEIFPAST-----DARYFRERGLPAIGFSPMANTPI 400
+ + A++K G PE+ ST DAR+ G P + F + T
Sbjct: 293 P---GKLVDAVSAAIKKVTGI--TPEL---STSGGTSDARFIAAYGCPVVEFGLVNAT-- 342
Query: 401 LLHDHNEFLNQAEYLKGIDIYESII 425
+H NE ++ A+ K IYE I+
Sbjct: 343 -IHKVNERVSVADLEKLTAIYERIL 366
|
Peptidase M20 family, proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE; aspartyl dipeptidase; succinyl-diaminopimelate desuccinylase) subfamily. DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. It has been shown that DapE is essential for cell growth and proliferation. DapEs have been purified from Escherichia coli and Haemophilus influenzae, while the genes that encode for DapEs have been sequenced from several bacterial sources such as Corynebacterium glutamicum, Helicobacter pylori, Neisseria meningitidis and Mycobacterium tuberculosis. DapE is a small, dimeric enzyme that requires two zinc atoms per molecule for full enzymatic activity. All of the amino acids that function as metal binding ligands are strictly conserved in DapE. Length = 366 |
| >gnl|CDD|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 36 AYLQIDTSQPNPDYTNASKFILAQAEALS------LESQTLEFAKNKPLILLKWPGSNPQ 89
LQ + P+ NA + +L + S LE + + + + + +++++PG+
Sbjct: 18 KTLQNNPPALVPEEDNAVRHVLETLKPYSTENGGPLEIEHVAYPEGRGNLIVEYPGTGEG 77
Query: 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IFARGSQDMKCVGMQYL--EAIRRL 146
+ SH DVVP+ P W PF L G+ ++ RG+ D C+G L + R+L
Sbjct: 78 KILSFVGSHMDVVPANPEAWEFDPF--SLSIDGDKLYGRGTTD--CLGHVALVTDLFRQL 133
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDG 172
R+V F+ +EE G
Sbjct: 134 AERKPALKRTVVAVFIANEENSEIPG 159
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16)-related subfamily. Proteins in this subfamily have not yet been characterized, but have been predicted to have deacetylase activity. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 423 |
| >gnl|CDD|236039 PRK07522, PRK07522, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
I+L+ HTDVVP + W+ PF G ++ RG+ DMK L A+ L
Sbjct: 65 GGIVLSGHTDVVPVDGQAWTSDPFRLTERD-GRLYGRGTCDMKGFIAAA----LAAVPEL 119
Query: 147 KASGFQPVRSVYLSFVPDEEIG 168
A+ + R ++L+F DEE+G
Sbjct: 120 AAAPLR--RPLHLAFSYDEEVG 139
|
Length = 385 |
| >gnl|CDD|235965 PRK07205, PRK07205, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 85 GSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAI 143
G +L +IL H DVVP + S W PF A G +F RG+QD K M L A+
Sbjct: 72 GQGEELLAIL--CHLDVVPEGDLSDWQTPPFEAVE-KDGCLFGRGTQDDKGPSMAALYAV 128
Query: 144 RRLKASGFQPVRSVYLSFVPDEEI 167
+ L +G Q + + F DEE
Sbjct: 129 KALLDAGVQFNKRIRFIFGTDEET 152
|
Length = 444 |
| >gnl|CDD|236285 PRK08554, PRK08554, peptidase; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111
KFI E+ +ES+ +E K+ + G P +L +H DVVP P +W+
Sbjct: 29 CPKFIKDTLESWGIESELIE--KDGYYAVYGEIGEG--KPKLLFMAHFDVVPVNPEEWNT 84
Query: 112 HPFGAHLDSQGN-IFARGSQDMKCVGMQYLEAIRRLKASGFQPVR-SVYLSFVPDEEIGG 169
PF L +G+ + RGS D K + A++ L +P+ V +F DEEIGG
Sbjct: 85 EPF--KLTVKGDKAYGRGSADDKGNVASVMLALKELSK---EPLNGKVIFAFTGDEEIGG 139
Query: 170 HDG---AEKFAD 178
AEK +
Sbjct: 140 AMAMHIAEKLRE 151
|
Length = 438 |
| >gnl|CDD|235802 PRK06446, PRK06446, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 92 SILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG 150
++L+ +H DV P +P S+W PF A +++ G I+ARG+ D K M L AI+ L
Sbjct: 64 TLLIYNHYDVQPVDPLSEWKRDPFSATIEN-GRIYARGASDNKGTLMARLFAIKHLIDKH 122
Query: 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEG 194
V +V + +EEIG + E F + + N L V+ EG
Sbjct: 123 KLNV-NVKFLYEGEEEIGSPN-LEDFIEKNK-NKLKADSVIMEG 163
|
Length = 436 |
| >gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 52 ASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLP-SILLNSHTDVVPSEPSK-W 109
A +FI L + N P ++ G+ S+++N H DV + W
Sbjct: 38 AQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMDVAEVSADEAW 97
Query: 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQ-YLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
+PF + G ++ RG+ DMK G+ L AI+ L +G + + V EE+G
Sbjct: 98 ETNPFEPTIK-DGWLYGRGAADMKG-GLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVG 155
|
Length = 421 |
| >gnl|CDD|193509 cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 49/229 (21%), Positives = 82/229 (35%), Gaps = 40/229 (17%)
Query: 214 LVIKARGAPGHGAK--------------LYDNSAMENLFKSIESVRRFRASQFDLVKAGL 259
+VI +G H + L D ++ + + + K G+
Sbjct: 248 VVITVKGKSAHASTPEKGVNAITYLAKFLADLPLDGAAKAFLKFLAKLLGEDYYGEKLGI 307
Query: 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319
E EV L + N ++N E E DIR P T D E + +++ + A
Sbjct: 308 AFEDEV----SGPL-----TLNPGIINYDDGELELTIDIRYPVTADPEDIVKQLKK--AA 356
Query: 320 ASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA 379
A T E + +P+ DS P L + + G+ KP T A
Sbjct: 357 AEYGFTVE-------VIEHLKPLYVPPDS--PLVKTLLDVYEEVTGEEAKPIAIGGGTYA 407
Query: 380 RYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY-ESIIK 426
R G + F P +H +E+++ + LK + IY E+I +
Sbjct: 408 RLL-PNG---VAFGPLFPGEEGTMHQADEYISIDDLLKALKIYAEAIYE 452
|
Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminal, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Length = 453 |
| >gnl|CDD|193551 cd05676, M20_dipept_like_CNDP, M20 cytosolic nonspecific dipeptidases including anserinase and serum carnosinase | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 28 DSIIERFRAYLQI--DTSQPN--PDYTNASKFILAQAEAL-------SLESQTLEFAKNK 76
D I+R + I ++ P P+ +++ + + L L QTL +
Sbjct: 10 DEYIDRLAEAVAIPSVSADPEKRPEVIRMMEWVADRLKKLGATVELVDLGKQTLPGEELP 69
Query: 77 -PLILLKWPGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKC 134
P ++L GS+P ++L+ H DV P++ W PF + G ++ RGS D K
Sbjct: 70 LPPVILGRLGSDPSKKTVLIYGHLDVQPAKLEDGWDTDPFTLT-EKDGKLYGRGSTDDKG 128
Query: 135 VGMQYLEAIRRLKASG 150
+ +L AI + G
Sbjct: 129 PVLGWLNAIEAYQKLG 144
|
Peptidase M20 family, CNDP (cytosolic nonspecific dipeptidase) subfamily including anserinase (Xaa-methyl-His dipeptidase, EC 3.4.13.5), 'serum' carnosinase (beta-alanyl-L-histidine dipeptidase; EC 3.4.13.20), and some uncharacterized proteins. Two genes, CN1 and CN2, coding for proteins that degrade carnosine (beta-alanyl-L-histidine) and homocarnosine (gamma-aminobutyric acid-L-histidine), two naturally occurring dipeptides with potential neuroprotective and neurotransmitter functions, have been identified. CN1 encodes for serum carnosinase and has narrow substrate specificity for Xaa-His dipeptides, where Xaa can be beta-alanine (carnosine), N-methyl beta-alanine, alanine, glycine and gamma-aminobutyric acid (homocarnosine). CN2 corresponds to the cytosolic nonspecific dipeptidase (CNDP; EC 3.4.13.18) and is not limited to Xaa-His dipeptides. CNDP requires Mn(2+) for full activity and does not hydrolyze homocarnosine. Anserinase is a dipeptidase that mainly catalyzes the hydrolysis of N-alpha-acetylhistidine. Length = 466 |
| >gnl|CDD|237265 PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-05
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 275 AGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASL 334
AGT N+ P E EA F+ R AESL+ R+ + T E+
Sbjct: 238 AGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDKHGLDYTLEWTL---- 288
Query: 335 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST-----DARYFRERGLPA 389
G P LT + + A+ G PE+ ST DAR+ + G
Sbjct: 289 ---SGEPFLTPP---GKLVDAVVAAIEAVTGI--TPEL---STSGGTSDARFIADYGAQV 337
Query: 390 IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428
+ F P+ T +H NE ++ A+ K IYE I++
Sbjct: 338 VEFGPVNAT---IHKVNECVSVADLEKLTRIYERILERL 373
|
Length = 375 |
| >gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNK------PLILL 81
D+ +ER A L+I + +P Y + A+ L + +L F + P+++
Sbjct: 17 DASLERLFALLRIPSISTDPAYAADCR---KAADWLVADLASLGFEASVRDTPGHPMVVA 73
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGN----IFARGSQDMKCVG 136
G P +L H DV P +P W PF + + I ARG+ D K
Sbjct: 74 HHEGPTGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQL 133
Query: 137 MQYLEAIRRLKA-SGFQPVRSVYLSFVPDEEIG 168
M ++EA R KA +G PVR L F +EE G
Sbjct: 134 MTFVEACRAWKAVTGSLPVRVTIL-FEGEEESG 165
|
Length = 464 |
| >gnl|CDD|193553 cd05678, M20_dipept_like_1, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 30 IIERFRAYLQI--DTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN 87
+ FR L I D + P NA ++ E +Q L PL+L + P +
Sbjct: 1 SLPEFRELLSIPNDATDPADIQKNA-DWLEKAFEKRGFTTQRLP-TGGLPLLLAERP-TA 57
Query: 88 PQLPSILLNSHTDVVPSEPSKW-SHHPF---------------------GAHLDSQGNIF 125
+IL +H D P +PSKW PF +D + IF
Sbjct: 58 GARKTILFYAHFDGQPVDPSKWDQKSPFTPVLKEKDADGNWTLPNWDLLKQEIDPEWRIF 117
Query: 126 ARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
AR + D K + +L A+ LKA+G P ++ + +EE G
Sbjct: 118 ARSASDDKGPIIMFLAALDALKAAGIPPAVNIKVILDSEEEKG 160
|
Peptidase M20 family, unknown dipeptidase-like subfamily 1 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 466 |
| >gnl|CDD|193509 cd03888, M20_PepV, M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 98 HTDVVPSEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156
H DVVP W+ PF + D G ++ RG+ D K + L A++ LK G +
Sbjct: 79 HLDVVP-AGEGWTTDPFEPTIKD--GKLYGRGTSDDKGPAIAALYALKALKDLGLPLKKR 135
Query: 157 VYLSFVPDEEIG 168
+ L F DEE G
Sbjct: 136 IRLIFGTDEESG 147
|
Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminal, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Length = 453 |
| >gnl|CDD|183836 PRK13004, PRK13004, peptidase; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 7e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 85 GSNPQLPSILLNSHTDVVP-SEPSKWSHHPFGAHLDSQGNIFARGSQDMK 133
G +L I ++H D V + W PF D G I+ RG+ D K
Sbjct: 66 GHGKKL--IAFDAHIDTVGIGDIKNWDFDPFEGEED-DGRIYGRGTSDQK 112
|
Length = 399 |
| >gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 9e-05
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 23/120 (19%)
Query: 58 AQAEALSLESQTLEFAKNK-PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGA 116
+ EAL E + + ++ + G P ILL H D V P G
Sbjct: 30 EELEALGFEVERIPGPDEFGDHLVATFKGGGG--PRILLLGHLDTV---------FPKG- 77
Query: 117 HLDSQ------GNIFARGSQDMK--CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
L + + G DMK V L A++ LKA G + + DEEIG
Sbjct: 78 TLAFRPFRVDGDRAYGPGVADMKGGIVVA--LYALKALKALGLLDDLPITVLLNSDEEIG 135
|
Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells. Length = 363 |
| >gnl|CDD|168961 PRK07473, PRK07473, carboxypeptidase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 82 KWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGA----HLDSQGN-IFARGSQDMKCVG 136
++P P IL+ H D V HP G +GN + G DMK
Sbjct: 67 RFPHPRQGEPGILIAGHMDTV---------HPVGTLEKLPWRREGNKCYGPGILDMKGGN 117
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168
LEAIR+L +G + + F PDEE+G
Sbjct: 118 YLALEAIRQLARAGITTPLPITVLFTPDEEVG 149
|
Length = 376 |
| >gnl|CDD|235346 PRK05111, PRK05111, acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 9e-05
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 29 SIIERFRAYLQIDT---SQPNPDYTNASKFI--LAQ-AEAL--SLESQTLEFAKNKPLIL 80
S IE +RA + + + P D +N + I LA E L ++E Q + + K L
Sbjct: 6 SFIEMYRALIATPSISATDPALDQSNRA-VIDLLAGWFEDLGFNVEIQPVPGTRGK-FNL 63
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN-IFARGSQDMKCVGMQY 139
L GS +LL HTD VP + +W+ PF L ++ G+ DMK
Sbjct: 64 LASLGSGEG--GLLLAGHTDTVPFDEGRWTRDPF--TLTEHDGKLYGLGTADMKGFFAFI 119
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
LEA+R + + + + +Y+ DEE GA FA++
Sbjct: 120 LEALRDIDLTKLK--KPLYILATADEE-TSMAGARAFAEAT 157
|
Length = 383 |
| >gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 28 DSIIERFRAYLQIDT----SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKW 83
++ +E + +L+I + S+ D A++++ E LE + P++ W
Sbjct: 14 EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADW 73
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEA 142
P P++L+ H DV P +P W PF + G ++ARG+ D K +L+A
Sbjct: 74 L-HAPGKPTVLIYGHYDVQPVDPLNLWETPPFEPTI-RDGKLYARGASDDKGQVFMHLKA 131
Query: 143 IRR-LKASGFQPVRSVYLSFVPDEEIG 168
+ LK G PV +V +EEIG
Sbjct: 132 VEALLKVEGTLPV-NVKFCIEGEEEIG 157
|
Length = 456 |
| >gnl|CDD|193513 cd03893, M20_Dipept_like, M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 77 PLILLKWPGSNPQLPSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCV 135
P +L P P++LL +H DV P+ + W PF + G ++ RG+ D K
Sbjct: 52 PAVLAHRPAP-EGAPTVLLYAHYDVQPAGDEDAWDSDPFTL-TERDGRLYGRGAADDKGG 109
Query: 136 GMQYLEAIRRLKASGFQPVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
+L A+R L G PV + + + EEIG G E + H
Sbjct: 110 IAAHLAALRALGGLGDLPVG---VKVIIEGEEEIGS-PGLEALLEEH 152
|
Peptidase M20 family, dipeptidase-like subfamily. This group contains a large variety of enzymes, including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase), canosinase, DUG2 type proteins, as well as many proteins inferred by homology to be dipeptidases. These enzymes have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Substrates of CNDP are varied and not limited to Xaa-His dipeptides. DUG2 proteins contain a metallopeptidase domain and a large N-terminal WD40 repeat region, and are involved in the alternative pathway of glutathione degradation. Length = 428 |
| >gnl|CDD|193506 cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMT 325
+VN+ + GT S N+ P AEA D+R +AE +E +
Sbjct: 217 TTVNVGVISGGTAS------NVVPDHAEAEVDVRFTTAEEAERVEAAL-RALVAT----P 265
Query: 326 FEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS---TDARYF 382
+ GRP + T +S L E A ++ +LG A+ +D +
Sbjct: 266 PVPGTTVEVTGGIGRPPMEPTPASEA---LFELA-QEIAAELGLGLEEEATGGGSDGNFT 321
Query: 383 RERGLPAI-GFSPM 395
G+P + G P+
Sbjct: 322 AALGVPTLDGLGPV 335
|
Peptidase M20 family, Glutamate carboxypeptidase (carboxypeptidase G; carboxypeptidase G1; carboxypeptidase G2; CPDG2; CPG2; Folate hydrolase G2; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; E.C. 3.4.17.11) subfamily. CPDG2 is a periplasmic enzyme that is synthesized with a signal peptide. It is a dimeric zinc-dependent exopeptidase, with two domains, a catalytic domain, which provides the ligands for the two zinc ions in the active site, and a dimerization domain. CPDG2 cleaves the C-terminal glutamate moiety from a wide range of N-acyl groups, including peptidyl, aminoacyl, benzoyl, benzyloxycarbonyl, folyl, and pteroyl groups to release benzoic acid, phenol, and aniline mustards. It is used clinically to treat methotrexate toxicity by hydrolyzing it to inactive and non-toxic metabolites. It is also proposed for use in antibody-directed enzyme prodrug therapy; for example, glutamate can be cleaved from glutamated benzoyl nitrogen mustards, producing nitrogen mustards with effective cytotoxicity against tumor cells. Length = 363 |
| >gnl|CDD|130957 TIGR01902, dapE-lys-deAc, N-acetyl-ornithine/N-acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 84/394 (21%), Positives = 129/394 (32%), Gaps = 80/394 (20%)
Query: 45 PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104
P+ NA+KF+ ++ L L+ ++ A N IL K G ILL H D VP
Sbjct: 12 PSGKEANAAKFLEEISKDLGLKL-IIDDAGN--FILGK--GDGH--KKILLAGHVDTVPG 64
Query: 105 E-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163
P K G ++ RG+ D K + + A L G + V +S +
Sbjct: 65 YIPVKIE----------GGLLYGRGAVDAKGPLIAMIFATWLLNEKGIK----VIVSGLV 110
Query: 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDE--GLASTTEDYRAFYAERCPWWLVIKARGA 221
DEE GA + D + +++ E G T Y+ L I G
Sbjct: 111 DEE-SSSKGAREVID----KNYPFYVIVGEPSGAEGITLGYKGSLQ------LKIMCEGT 159
Query: 222 PGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPN 281
P H + +A E L + + + K + S N
Sbjct: 160 PFHSS--SAGNAAELLIDYSKKIIEVYKQPENYDKPSIVPTIIRFGE----------SYN 207
Query: 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRP 341
P++ E FD+R PP E + I + E
Sbjct: 208 DT-----PAKLELHFDLRYPPNNKPEEAIKEIT-----DKFPICLEI---------VDET 248
Query: 342 ILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS------TDARYFRERGLPAIGFSPM 395
+NP A+RK K P + + A + +P + + P
Sbjct: 249 PPYKVSRNNPLVRAFVRAIRKQGMK---PRLKKKTGTSDMNILAPIW---TVPMVAYGPG 302
Query: 396 ANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429
+T L H E ++ AEYL GI I+
Sbjct: 303 DST--LDHTPQEKISLAEYLIGIKTLMLAIEELW 334
|
This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade. Length = 336 |
| >gnl|CDD|130941 TIGR01886, dipeptidase, dipeptidase PepV | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP+ W+ PF +D +G I+ARG+ D K + A++ LK G P + +
Sbjct: 86 HMDVVPAG-EGWTRDPFEPEID-EGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKI 143
Query: 158 YLSFVPDEEIG 168
+EE G
Sbjct: 144 RFVVGTNEETG 154
|
This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme , has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 466 |
| >gnl|CDD|235988 PRK07318, PRK07318, dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSV 157
H DVVP W P+ + G I+ARG+ D K M A++ +K G + V
Sbjct: 87 HLDVVP-AGDGWDTDPYEPVI-KDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKV 144
Query: 158 YLSFVPDEEIGGHD 171
DEE G
Sbjct: 145 RFIVGTDEESGWKC 158
|
Length = 466 |
| >gnl|CDD|193556 cd05681, M20_dipept_like_4, Uncharacterized M20 Dipeptidases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 31 IERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ 89
+E R L+I + S N ++ + E L E + L P++ ++ +
Sbjct: 2 LEDLRELLRIPSVSAQNRGIEETAELLKELLEELGAEVEILP-TDGHPVVYAEFDSGAAK 60
Query: 90 LPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR-LK 147
++L +H DV P+EP +W PF + G ++ARG+ D K M L A+R L
Sbjct: 61 --TLLFYNHYDVQPAEPLEEWQSDPFALT-ERGGKLYARGAADDKGELMARLAALRAYLA 117
Query: 148 ASGFQPVRSVYLSFVPD--EEIG 168
G PV + F+ + EE+G
Sbjct: 118 EHGKLPVN---IKFLVEGEEEVG 137
|
Peptidase M20 family, unknown dipeptidase-like subfamily 3 (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine. Length = 430 |
| >gnl|CDD|193514 cd03894, M20_ArgE, M20 Peptidase acetylornithine deacetylase | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 21/147 (14%)
Query: 286 NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQ-RASLHDKFGRPILT 344
N+ P + E F+ R P D E L R+ A M + + P L
Sbjct: 240 NIIPGQCELDFEFRPLPGMDPEELLARLRAYAAELLLPMKAVAPEAGIEVEVLSEVPGLE 299
Query: 345 ATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS--TDARYFRERGLPAIGFSP----MANT 398
+ AV A LG + + T+A F+ G+P + P A+
Sbjct: 300 TAADA--------PAVALAAELLGGNKAGKVAFGTEAGLFQAAGIPTVVCGPGSIAQAHQ 351
Query: 399 PILLHDHNEFLNQAEYLKGIDIYESII 425
P +EF+ + +I
Sbjct: 352 P------DEFIELEQLDACEAFLRRLI 372
|
Peptidase M20 family, acetylornithine deacetylase (ArgE, Acetylornithinase, AO, N2-acetyl-L-ornithine amidohydrolase, EC 3.5.1.16) subfamily. ArgE catalyzes the conversion of N-acetylornithine to ornithine, which can then be incorporated into the urea cycle for the final stage of arginine synthesis. The substrate specificity of ArgE is quite broad; several alpha-N-acyl-L-amino acids can be hydrolyzed, including alpha-N-acetylmethionine and alpha-N-formylmethionine. ArgE shares significant sequence homology and biochemical features, and possibly a common origin, with glutamate carboxypeptidase (CPG2) and succinyl-diaminopimelate desuccinylase (DapE), and aminoacylase I (ACY1), having all metal ligand binding residues conserved. Length = 372 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 444 | |||
| TIGR01880 | 400 | Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | 100.0 | |
| PRK13013 | 427 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK06915 | 422 | acetylornithine deacetylase; Validated | 100.0 | |
| PRK08588 | 377 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK06837 | 427 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK08596 | 421 | acetylornithine deacetylase; Validated | 100.0 | |
| KOG2275 | 420 | consensus Aminoacylase ACY1 and related metalloexo | 100.0 | |
| PRK13983 | 400 | diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK09133 | 472 | hypothetical protein; Provisional | 100.0 | |
| PRK13009 | 375 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| TIGR01910 | 375 | DapE-ArgE acetylornithine deacetylase or succinyl- | 100.0 | |
| TIGR01246 | 370 | dapE_proteo succinyl-diaminopimelate desuccinylase | 100.0 | |
| PRK08201 | 456 | hypothetical protein; Provisional | 100.0 | |
| PRK07522 | 385 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK07906 | 426 | hypothetical protein; Provisional | 100.0 | |
| TIGR01892 | 364 | AcOrn-deacetyl acetylornithine deacetylase (ArgE). | 100.0 | |
| PRK06446 | 436 | hypothetical protein; Provisional | 100.0 | |
| PRK08651 | 394 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| PRK05111 | 383 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK13004 | 399 | peptidase; Reviewed | 100.0 | |
| TIGR03526 | 395 | selenium_YgeY putative selenium metabolism hydrola | 100.0 | |
| TIGR03320 | 395 | ygeY M20/DapE family protein YgeY. Members of this | 100.0 | |
| PRK07338 | 402 | hypothetical protein; Provisional | 100.0 | |
| PRK07473 | 376 | carboxypeptidase; Provisional | 100.0 | |
| PRK09104 | 464 | hypothetical protein; Validated | 100.0 | |
| PRK06133 | 410 | glutamate carboxypeptidase; Reviewed | 100.0 | |
| PRK08262 | 486 | hypothetical protein; Provisional | 100.0 | |
| PRK07907 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK08737 | 364 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK00466 | 346 | acetyl-lysine deacetylase; Validated | 100.0 | |
| PRK07079 | 469 | hypothetical protein; Provisional | 100.0 | |
| PRK08652 | 347 | acetylornithine deacetylase; Provisional | 100.0 | |
| PRK04443 | 348 | acetyl-lysine deacetylase; Provisional | 100.0 | |
| COG0624 | 409 | ArgE Acetylornithine deacetylase/Succinyl-diaminop | 100.0 | |
| TIGR01886 | 466 | dipeptidase dipeptidase PepV. This model represent | 100.0 | |
| TIGR01900 | 373 | dapE-gram_pos succinyl-diaminopimelate desuccinyla | 100.0 | |
| PRK13007 | 352 | succinyl-diaminopimelate desuccinylase; Reviewed | 100.0 | |
| TIGR01883 | 361 | PepT-like peptidase T-like protein. This model rep | 100.0 | |
| TIGR01902 | 336 | dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d | 100.0 | |
| PRK13381 | 404 | peptidase T; Provisional | 100.0 | |
| PRK07318 | 466 | dipeptidase PepV; Reviewed | 100.0 | |
| PRK07205 | 444 | hypothetical protein; Provisional | 100.0 | |
| PLN02280 | 478 | IAA-amino acid hydrolase | 100.0 | |
| PRK08554 | 438 | peptidase; Reviewed | 100.0 | |
| PRK06156 | 520 | hypothetical protein; Provisional | 100.0 | |
| PRK05469 | 408 | peptidase T; Provisional | 100.0 | |
| PLN02693 | 437 | IAA-amino acid hydrolase | 100.0 | |
| TIGR01893 | 477 | aa-his-dipept aminoacyl-histidine dipeptidase. | 100.0 | |
| TIGR01887 | 447 | dipeptidaselike dipeptidase, putative. This model | 100.0 | |
| TIGR01882 | 410 | peptidase-T peptidase T. This model represents a t | 100.0 | |
| TIGR01891 | 363 | amidohydrolases amidohydrolase. This model represe | 100.0 | |
| PRK12893 | 412 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK15026 | 485 | aminoacyl-histidine dipeptidase; Provisional | 100.0 | |
| PRK12892 | 412 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK09290 | 413 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK12891 | 414 | allantoate amidohydrolase; Reviewed | 100.0 | |
| PRK12890 | 414 | allantoate amidohydrolase; Reviewed | 100.0 | |
| TIGR01879 | 401 | hydantase amidase, hydantoinase/carbamoylase famil | 100.0 | |
| COG1473 | 392 | AbgB Metal-dependent amidase/aminoacylase/carboxyp | 100.0 | |
| KOG2276 | 473 | consensus Metalloexopeptidases [Amino acid transpo | 100.0 | |
| TIGR03176 | 406 | AllC allantoate amidohydrolase. This enzyme cataly | 100.0 | |
| PRK13590 | 591 | putative bifunctional OHCU decarboxylase/allantoat | 100.0 | |
| PRK13799 | 591 | unknown domain/N-carbamoyl-L-amino acid hydrolase | 100.0 | |
| PF01546 | 189 | Peptidase_M20: Peptidase family M20/M25/M40 This f | 99.95 | |
| COG2195 | 414 | PepD Di- and tripeptidases [Amino acid transport a | 99.93 | |
| COG4187 | 553 | RocB Arginine degradation protein (predicted deacy | 99.87 | |
| TIGR03106 | 343 | trio_M42_hydro hydrolase, peptidase M42 family. Th | 99.74 | |
| PRK10199 | 346 | alkaline phosphatase isozyme conversion aminopepti | 99.74 | |
| PRK09961 | 344 | exoaminopeptidase; Provisional | 99.74 | |
| TIGR03107 | 350 | glu_aminopep glutamyl aminopeptidase. This model r | 99.71 | |
| COG1363 | 355 | FrvX Cellulase M and related proteins [Carbohydrat | 99.65 | |
| PRK09864 | 356 | putative peptidase; Provisional | 99.61 | |
| PF07687 | 111 | M20_dimer: Peptidase dimerisation domain This fami | 99.52 | |
| KOG2194 | 834 | consensus Aminopeptidases of the M20 family [Postt | 98.85 | |
| PF04389 | 179 | Peptidase_M28: Peptidase family M28; InterPro: IPR | 98.77 | |
| PF05343 | 292 | Peptidase_M42: M42 glutamyl aminopeptidase; InterP | 98.49 | |
| KOG3946 | 338 | consensus Glutaminyl cyclase [Posttranslational mo | 98.13 | |
| COG2234 | 435 | Iap Predicted aminopeptidases [General function pr | 97.59 | |
| KOG2195 | 702 | consensus Transferrin receptor and related protein | 97.07 | |
| KOG2526 | 555 | consensus Predicted aminopeptidases - M20/M25/M40 | 96.91 | |
| PF05450 | 234 | Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri | 95.47 | |
| PF05343 | 292 | Peptidase_M42: M42 glutamyl aminopeptidase; InterP | 94.84 | |
| PRK02256 | 462 | putative aminopeptidase 1; Provisional | 93.86 | |
| PTZ00371 | 465 | aspartyl aminopeptidase; Provisional | 91.1 | |
| PF00883 | 311 | Peptidase_M17: Cytosol aminopeptidase family, cata | 90.93 | |
| cd00433 | 468 | Peptidase_M17 Cytosol aminopeptidase family, N-ter | 90.55 | |
| PRK02813 | 428 | putative aminopeptidase 2; Provisional | 90.46 | |
| PRK02256 | 462 | putative aminopeptidase 1; Provisional | 87.29 | |
| COG4882 | 486 | Predicted aminopeptidase, Iap family [General func | 86.8 | |
| PRK00913 | 483 | multifunctional aminopeptidase A; Provisional | 85.8 | |
| COG0260 | 485 | PepB Leucyl aminopeptidase [Amino acid transport a | 83.31 | |
| PRK05015 | 424 | aminopeptidase B; Provisional | 80.35 |
| >TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-61 Score=481.63 Aligned_cols=393 Identities=58% Similarity=1.016 Sum_probs=325.4
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
...++.+++|++|++|||+++..++.++++||+++|+++|++++.++...+++|+++.++|.++..|+|+|+|||||||.
T Consensus 6 ~~~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~ 85 (400)
T TIGR01880 6 WEEDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPV 85 (400)
T ss_pred cchHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCC
Confidence 45688999999999999998655678999999999999999988776544688999999775544589999999999999
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
++..|+++||.+.+++||++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+..|++.+++++.+++
T Consensus 86 ~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~ 165 (400)
T TIGR01880 86 FREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKA 165 (400)
T ss_pred CcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccC
Confidence 87889999999987229999999999999999999999999999887888999999999999886469999998766666
Q ss_pred CceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhch-hccC
Q 013368 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL-KAEG 263 (444)
Q Consensus 185 ~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~-~~~~ 263 (444)
.|+.++++.|..+|++...++.+++|..+++|+++|+++|+|.|...||+..++.++..|.++....++.+.... ...+
T Consensus 166 ~~~~~~~d~g~~~~~~~~~i~~~~kG~~~~~l~v~G~~~Hs~~~~~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 245 (400)
T TIGR01880 166 LNLGFALDEGLASPDDVYRVFYAERVPWWVVVTAPGNPGHGSKLMENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIG 245 (400)
T ss_pred CceEEEEcCCCcccccccceeEEeeEEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccccc
Confidence 678888887765666556889999999999999999999999865459999999999999876543333222111 1112
Q ss_pred CceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCc
Q 013368 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPIL 343 (444)
Q Consensus 264 ~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (444)
..+|++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++++.....++++++.. ....|+.
T Consensus 246 ~~~t~~v~~i~gG~------~~nvIP~~a~~~~diR~~p~~~~~~~~~~i~~~i~~~~~~~~~~~~~------~~~~~~~ 313 (400)
T TIGR01880 246 DVTSVNLTKLKGGV------QSNVIPSEAEAGFDIRLAPSVDFEEMENRLDEWCADAGEGVTYEFSQ------HSGKPLV 313 (400)
T ss_pred ccceeecceeccCC------cCCcCCCccEEEEEEeeCCCCCHHHHHHHHHHHHhccCCceEEEEee------cCCCCCC
Confidence 34799999999997 88999999999999999999999999999999987533455565543 1233333
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013368 344 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 423 (444)
Q Consensus 344 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~ 423 (444)
...+.++++++.+.+++++.+... .+...+|+||+++++..|+|++.|||+..+...+|++||+++++++.+++++|.+
T Consensus 314 ~~~~~~~~lv~~l~~a~~~~~~~~-~~~~~~g~tDa~~~~~~gip~v~fgp~~~~~~~aH~~dE~i~i~~l~~~~~~~~~ 392 (400)
T TIGR01880 314 TPHDDSNPWWVAFKDAVKEMGCTF-KPEILPGSTDSRYIRAAGVPALGFSPMNNTPVLLHDHNEFLNEAVFLRGIEIYQT 392 (400)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCee-cceeecCcchHHHHHhCCCCeEEECCccCCcccccCCCCceEHHHHHHHHHHHHH
Confidence 345668899999999999976543 4556789999999999999999999986433468999999999999999999999
Q ss_pred HHHHHHc
Q 013368 424 IIKAYAS 430 (444)
Q Consensus 424 ~l~~l~~ 430 (444)
++..+..
T Consensus 393 ~l~~~~~ 399 (400)
T TIGR01880 393 LISALAS 399 (400)
T ss_pred HHHHhhc
Confidence 9999864
|
This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids. |
| >PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=464.58 Aligned_cols=392 Identities=19% Similarity=0.306 Sum_probs=312.4
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC-ChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCcE
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSI 93 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~i 93 (444)
.+++.+++++++++|++|||+++.+ +|.++++||.++|+++|++++.++... +++|++++++|.++ .|+|
T Consensus 9 ~~~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~~~-~~~i 87 (427)
T PRK13013 9 IEARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGARD-GDCV 87 (427)
T ss_pred HHHhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCCCC-CCEE
Confidence 4556788999999999999998554 567999999999999999988765321 25799999976543 4789
Q ss_pred EEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccH
Q 013368 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (444)
Q Consensus 94 ~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (444)
+|+||+||||.+ +.|+++||++.++ ||+|||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+..|.
T Consensus 88 ~l~gH~DvVp~~-~~W~~~Pf~~~~~-dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~ 165 (427)
T PRK13013 88 HFNSHHDVVEVG-HGWTRDPFGGEVK-DGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGGFGGV 165 (427)
T ss_pred EEEeccccCCCC-CCCcCCCCCceEE-CCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCChhHH
Confidence 999999999986 6799999999998 99999999999999999999999999998877889999999999998865588
Q ss_pred HHHHhccccc--cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhh
Q 013368 174 EKFADSHVFN--SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS 250 (444)
Q Consensus 174 ~~~~~~~~~~--~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~ 250 (444)
.++++++.++ ..|++++.+ |+....+..+++|..+++|+++|+++|++.|+.| ||+..++++++.|+++...
T Consensus 166 ~~l~~~~~~~~~~~d~~i~~e-----p~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l~~~~~~ 240 (427)
T PRK13013 166 AYLAEQGRFSPDRVQHVIIPE-----PLNKDRICLGHRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEIEERLFP 240 (427)
T ss_pred HHHHhcCCccccCCCEEEEec-----CCCCCceEEeeeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHHHHHhhh
Confidence 8888876555 457777653 5543468889999999999999999999999999 9999999999999754211
Q ss_pred hhHHHHhchh---ccCCceeeeeeeeccCCCCCC----CcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc---C
Q 013368 251 QFDLVKAGLK---AEGEVVSVNMAFLKAGTPSPN----GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP---A 320 (444)
Q Consensus 251 ~~~~~~~~~~---~~~~~~t~~~~~i~~G~~~~~----~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~---~ 320 (444)
.......... .....++++++.|++|....+ ....|+||++|++++|+|+.+.++.+++.++|++.+.. .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~a~~~idiR~~p~~~~~~v~~~i~~~i~~~~~~ 320 (427)
T PRK13013 241 LLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADRCRIVIDRRFLIEEDLDEVKAEITALLERLKRA 320 (427)
T ss_pred hhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCceEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1110000000 001247899999999973211 11239999999999999999999999999999988763 2
Q ss_pred CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcC-C-CeEEEccCCCC
Q 013368 321 SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG-L-PAIGFSPMANT 398 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~g-i-p~v~~gp~~~~ 398 (444)
.++++++++. ....|+. ..+.++++++.+.+++++..+..+.....+|++|++++...| + |++.|||+...
T Consensus 321 ~~~~~~~~~~------~~~~~p~-~~~~~~~lv~~l~~a~~~~~g~~~~~~~~~g~~D~~~~~~~g~~~~~v~fGPg~~~ 393 (427)
T PRK13013 321 RPGFAYEIRD------LFEVLPT-MTDRDAPVVRSVAAAIERVLGRQADYVVSPGTYDQKHIDRIGKLKNCIAYGPGILD 393 (427)
T ss_pred CCCceeEEEE------cccCCcc-cCCCCCHHHHHHHHHHHHhhCCCCceeecCccCCHHHHHhcCCCCCEEEECCCCcc
Confidence 2355666553 1233333 356678999999999998765443445567889999999987 4 69999998654
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 399 PILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 399 ~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.+|++|||++++++.+++++|+.++.++++.
T Consensus 394 --~aH~~nE~v~i~~l~~~~~~l~~~l~~~~~~ 424 (427)
T PRK13013 394 --LAHQPDEWVGIADMVDSAKVMALVLADLLAG 424 (427)
T ss_pred --ccCCCCceeEHHHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999998753
|
|
| >PRK06915 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=464.07 Aligned_cols=384 Identities=21% Similarity=0.334 Sum_probs=311.8
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCCeEEEEec
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKWP 84 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~-----------------~~~~nl~~~~~ 84 (444)
.++.+.++.++++++|++|||+| ++|.+++++|+++|+++|++++.++.. .+++||++.++
T Consensus 11 ~~~~~~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nlia~~~ 88 (422)
T PRK06915 11 YIESHEEEAVKLLKRLIQEKSVS--GDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSPNIVATLK 88 (422)
T ss_pred HHHhhHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCceEEEEEc
Confidence 35667788999999999999996 789999999999999999998765421 24689999997
Q ss_pred CCCCCCCcEEEEeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeec
Q 013368 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (444)
Q Consensus 85 g~~~~~~~i~l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (444)
|.++ .|+|+|+|||||||.++ +.|+++||+++++ +|++||||++|||++++++|.|++.|++.+.+++++|.|++++
T Consensus 89 g~~~-~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~~~ 166 (422)
T PRK06915 89 GSGG-GKSMILNGHIDVVPEGDVNQWDHHPYSGEVI-GGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQSVI 166 (422)
T ss_pred CCCC-CCeEEEEeeccccCCCCcccCcCCCCCceEE-CCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 7554 38999999999999976 7899999999997 9999999999999999999999999999887788999999999
Q ss_pred CcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHH
Q 013368 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIE 242 (444)
Q Consensus 164 ~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~ 242 (444)
+||.|+ .|+..++.++ + ..|.+++. +|++ ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++.
T Consensus 167 dEE~g~-~G~~~~~~~~-~-~~d~~i~~-----ep~~-~~i~~~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~~~~~~~ 237 (422)
T PRK06915 167 EEESGG-AGTLAAILRG-Y-KADGAIIP-----EPTN-MKFFPKQQGSMWFRLHVKGKAAHGGTRYEGVSAIEKSMFVID 237 (422)
T ss_pred ccccCC-cchHHHHhcC-c-CCCEEEEC-----CCCC-ccceeecccEEEEEEEEEeeccccCCCCcCcCHHHHHHHHHH
Confidence 999886 5888888765 3 35776664 4654 568899999999999999999999999999 99999999999
Q ss_pred HHHhchhhhhHHHHhch-hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCC
Q 013368 243 SVRRFRASQFDLVKAGL-KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321 (444)
Q Consensus 243 ~l~~l~~~~~~~~~~~~-~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~ 321 (444)
.|..+....-....... ......+|++++.|+||. ..|+||+.|++.+|+|+.|.++.+++.++|++.++...
T Consensus 238 ~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~a~~~~d~R~~p~~~~~~v~~~i~~~l~~~~ 311 (422)
T PRK06915 238 HLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGS------WPSSVPDSVILEGRCGIAPNETIEAAKEEFENWIAELN 311 (422)
T ss_pred HHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCC------CCCccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99876531100000000 001123589999999987 88999999999999999999999999999998876422
Q ss_pred C------CceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhc-CCCeEEEcc
Q 013368 322 R------NMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER-GLPAIGFSP 394 (444)
Q Consensus 322 ~------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~-gip~v~~gp 394 (444)
. ...++++... ....|. .+..++++++++.++++++.+..+.....+|++|+++|.+. |+|++.|||
T Consensus 312 ~~~~~~~~~~~~v~~~~----~~~~~~--~~~~d~~lv~~l~~a~~~~~G~~~~~~~~~g~tD~~~~~~~~giP~v~fGp 385 (422)
T PRK06915 312 DVDEWFVEHPVEVEWFG----ARWVPG--ELEENHPLMTTLEHNFVEIEGNKPIIEASPWGTDGGLLTQIAGVPTIVFGP 385 (422)
T ss_pred ccChhhhcCCceEEeec----ccCCcc--cCCCCCHHHHHHHHHHHHHhCCCCeeceeeeeccHHHHhccCCCCEEEECC
Confidence 1 1223333200 012233 35678999999999999986554344556789999999987 999999999
Q ss_pred CCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHccc
Q 013368 395 MANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 432 (444)
Q Consensus 395 ~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~~ 432 (444)
+... .+|++||+++++++.+++++|+.++..+++..
T Consensus 386 g~~~--~aH~~dE~v~~~~l~~~~~~~~~ll~~~~~~~ 421 (422)
T PRK06915 386 GETK--VAHYPNEYIEVDKMIAAAKIIALTLLDWCEVK 421 (422)
T ss_pred CCcc--ccCCCCceeEHHHHHHHHHHHHHHHHHHhCCC
Confidence 8654 69999999999999999999999999997654
|
|
| >PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=453.26 Aligned_cols=370 Identities=22% Similarity=0.325 Sum_probs=308.9
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC-
Q 013368 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~- 106 (444)
++.+++|++|++|||+| ++|.+++++|.++|+++|++++.++...+++|+++.+ |.+ .|+|+|+||+||||+++
T Consensus 2 ~~~~~~l~~Lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~-g~~--~~~il~~~H~DtVp~~~~ 76 (377)
T PRK08588 2 EEKIQILADIVKINSVN--DNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEI-GSG--SPVLALSGHMDVVAAGDV 76 (377)
T ss_pred hHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEe-CCC--CceEEEEeeecccCCCCc
Confidence 57899999999999996 6889999999999999999988776555678999998 432 38999999999999965
Q ss_pred CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCc
Q 013368 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (444)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d 186 (444)
+.|+++||.+.++ +|++||||++|||++++++|.|++.|.+.+..++++|.|+|+++||.|+ .|++++++++.+++.|
T Consensus 77 ~~w~~~Pf~~~~~-~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~-~G~~~~~~~~~~~~~d 154 (377)
T PRK08588 77 DKWTYDPFELTEK-DGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGE-LGAKQLTEKGYADDLD 154 (377)
T ss_pred ccCcCCCCCeEEE-CCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCc-hhHHHHHhcCccCCCC
Confidence 7899999999997 9999999999999999999999999999887788999999999999885 7999999987666677
Q ss_pred eEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCc
Q 013368 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (444)
Q Consensus 187 ~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~ 265 (444)
.+++.+ |+. ..++++++|..+++|+++|+++|+|.|+.| |||..+++++..|.++... +... ...-..
T Consensus 155 ~~i~~e-----p~~-~~i~~~~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~----~~~~-~~~~~~ 223 (377)
T PRK08588 155 ALIIGE-----PSG-HGIVYAHKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDS----IKKH-NPYLGG 223 (377)
T ss_pred EEEEec-----CCC-ceeEEEEEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhh----hccc-CccCCC
Confidence 766653 543 568889999999999999999999999998 9999999999999865321 1100 011134
Q ss_pred eeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCc
Q 013368 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPIL 343 (444)
Q Consensus 266 ~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~ 343 (444)
+|++++.++||. ..|+||++|++++|+|+.|.++.+++.++|+++++.. ..+++++++.. ...|++
T Consensus 224 ~t~~v~~i~gG~------~~nvip~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~------~~~~p~ 291 (377)
T PRK08588 224 LTHVVTIINGGE------QVNSVPDEAELEFNIRTIPEYDNDQVISLLQEIINEVNQNGAAQLSLDIY------SNHRPV 291 (377)
T ss_pred CceeeeEEeCCC------cCCcCCCeEEEEEEeccCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEe------cCCCCc
Confidence 789999999987 8999999999999999999999999999999888642 23345555531 233433
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 344 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 344 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~--~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
..+.++++++.++++++++.+..+.....+|+||+++|.. .|+|++.|||+... .+|++||+++++++.+++++|
T Consensus 292 -~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~~~~~ip~i~~Gpg~~~--~~H~~~E~i~~~~l~~~~~~~ 368 (377)
T PRK08588 292 -ASDKDSKLVQLAKDVAKSYVGQDIPLSAIPGATDASSFLKKKPDFPVIIFGPGNNL--TAHQVDEYVEKDMYLKFIDIY 368 (377)
T ss_pred -CCCCCCHHHHHHHHHHHHhhCCCCceecCCCcccHHHHhhhcCCCCEEEECCCCCc--cCCCCCceeEHHHHHHHHHHH
Confidence 3556899999999999997654434455678999999975 38999999998533 699999999999999999999
Q ss_pred HHHHHHHHc
Q 013368 422 ESIIKAYAS 430 (444)
Q Consensus 422 ~~~l~~l~~ 430 (444)
..++..+++
T Consensus 369 ~~~~~~~~~ 377 (377)
T PRK08588 369 KEIIIQYLK 377 (377)
T ss_pred HHHHHHHhC
Confidence 999988753
|
|
| >PRK06837 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=450.57 Aligned_cols=381 Identities=19% Similarity=0.273 Sum_probs=310.8
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec-----------------CCCCeEEEEec
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA-----------------KNKPLILLKWP 84 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~-----------------~~~~nl~~~~~ 84 (444)
..+++.++.+++|++|++|||+| ++|.++++||+++|+++|++++.++.. ++++||++.+.
T Consensus 14 ~i~~~~~~~~~~l~~li~ipS~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~ 91 (427)
T PRK06837 14 AVDAGFDAQVAFTQDLVRFPSTR--GAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAPNVVGTYR 91 (427)
T ss_pred HHHhhhHHHHHHHHHHhccCCCC--CcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCceEEEEec
Confidence 45667889999999999999996 688899999999999999998765421 25789999998
Q ss_pred CCCCCCCcEEEEeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeec
Q 013368 85 GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (444)
Q Consensus 85 g~~~~~~~i~l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (444)
|.+++.|+|+|+|||||||+++ +.|+++||+++++ +|++||||++|||++++++|.|++.|++.+..++++|.|+|++
T Consensus 92 g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~~ 170 (427)
T PRK06837 92 PAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIV-DGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARVHFQSVI 170 (427)
T ss_pred CCCCCCCeEEEEeecccCCCCCccccccCCCCcEEE-CCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEEe
Confidence 7655458999999999999986 7899999999998 9999999999999999999999999999887788999999999
Q ss_pred CcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHH
Q 013368 164 DEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIE 242 (444)
Q Consensus 164 ~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~ 242 (444)
+||.++ .|+..++..+. ..|++++.+ |+. ..++++++|..+++|+++|+++|+|.|+.| ||+..++++++
T Consensus 171 dEE~~g-~g~~~~~~~~~--~~d~~iv~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~ 241 (427)
T PRK06837 171 EEESTG-NGALSTLQRGY--RADACLIPE-----PTG-EKLVRAQVGVIWFRLRVRGAPVHVREAGTGANAIDAAYHLIQ 241 (427)
T ss_pred ccccCC-HhHHHHHhcCc--CCCEEEEcC-----CCC-CccccccceeEEEEEEEEeeccccCCcccCcCHHHHHHHHHH
Confidence 999876 48887776543 257766653 554 578899999999999999999999999998 99999999999
Q ss_pred HHHhchhhhhHHH-Hhc-hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC
Q 013368 243 SVRRFRASQFDLV-KAG-LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320 (444)
Q Consensus 243 ~l~~l~~~~~~~~-~~~-~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~ 320 (444)
.|..+........ ... .......++++++.++||. ..|+||++|++.+++|+.|.++.+++.++|++.++..
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~------~~nvVP~~~~~~~~ir~~p~~~~~~v~~~i~~~~~~~ 315 (427)
T PRK06837 242 ALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGD------WASSVPAWCDLDCRIAIYPGVTAADAQAEIEACLAAA 315 (427)
T ss_pred HHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCC------CCCccCCEEEEEEEEeECCCCCHHHHHHHHHHHHHHH
Confidence 9987643211000 000 0001124588999999987 8899999999999999999999999999999887642
Q ss_pred CCC--------ceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh-cCCCeEE
Q 013368 321 SRN--------MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE-RGLPAIG 391 (444)
Q Consensus 321 ~~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~-~gip~v~ 391 (444)
... .++++.. ...+++ .++.++++++.+.+++++..+..+.+...+|++|++++.. .|+|++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~-------~~~~p~-~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~g~tDa~~~~~~~gip~v~ 387 (427)
T PRK06837 316 ARDDRFLSNNPPEVVWSG-------FLAEGY-VLEPGSEAEAALARAHAAVFGGPLRSFVTTAYTDTRFYGLYYGIPALC 387 (427)
T ss_pred HhcChhhhhCCCeEEEEe-------cccCCc-CCCCCCHHHHHHHHHHHHHhCCCCeeeEEeeccchHHHhccCCCCEEE
Confidence 111 2333321 123333 4677899999999999987554435566789999999985 7999999
Q ss_pred EccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 392 FSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 392 ~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
|||+.. .+|++||+++++++.+++++|+.++..++..
T Consensus 388 ~Gp~~~---~~H~~nE~i~i~~l~~~~~~~~~~l~~~~~~ 424 (427)
T PRK06837 388 YGPSGE---GIHGFDERVDLESVRKVTKTIALFVAEWCGV 424 (427)
T ss_pred ECCCCC---ccCCCCceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 999865 5999999999999999999999999988753
|
|
| >PRK08596 acetylornithine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=449.32 Aligned_cols=389 Identities=20% Similarity=0.268 Sum_probs=311.9
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCC-CCcEEEEeecc
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ-LPSILLNSHTD 100 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~-~~~i~l~~H~D 100 (444)
.+...++.++++++|++|||+|+. ++|.++++||+++|+++|++++.++...+++|+++.++|.++. .|+|+|+||+|
T Consensus 8 i~~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~lll~~H~D 87 (421)
T PRK08596 8 IELRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSLIINGHMD 87 (421)
T ss_pred HHhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEEEEecccc
Confidence 345668899999999999999854 3688899999999999999998776545678999999775432 36799999999
Q ss_pred cccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 101 VVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 101 tvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
|||.++ +.|+.+||.+.++ ||+|||||++|||++++++|.|+++|++.+.+++++|.|+|+++||.|+ .|+++++++
T Consensus 88 tVp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~-~G~~~~~~~ 165 (421)
T PRK08596 88 VAEVSADEAWETNPFEPTIK-DGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGE-AGTLQCCER 165 (421)
T ss_pred ccCCCCccccccCCCCcEEE-CCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCC-cCHHHHHhc
Confidence 999987 6799999999998 9999999999999999999999999999888889999999999999986 699999987
Q ss_pred cccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeec----------CCccCCCCCC-CHHHHHHHHHHHHHhch
Q 013368 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA----------PGHGAKLYDN-SAMENLFKSIESVRRFR 248 (444)
Q Consensus 180 ~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~----------~~Hs~~p~~g-nai~~~~~~i~~l~~l~ 248 (444)
+. ..|++++.+ |+. . .+.+++|...+.++++|. .+|++.|+.| ||+..+++++..|+.+.
T Consensus 166 ~~--~~d~~i~~e-----p~~-~-~~~~~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i~~l~~~~ 236 (421)
T PRK08596 166 GY--DADFAVVVD-----TSD-L-HMQGQGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKIIQSLQELE 236 (421)
T ss_pred CC--CCCEEEECC-----CCC-C-ccccccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHHHHHHHHH
Confidence 53 358888886 443 2 257889998888888875 3699989888 99999999999998764
Q ss_pred hhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCC------
Q 013368 249 ASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR------ 322 (444)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~------ 322 (444)
.. +.............++++++.|+||. ..|+||++|++.+|+|+.|.++.+++.++|++.+.....
T Consensus 237 ~~-~~~~~~~~~~~~~~~t~~v~~i~gG~------~~nvvP~~~~~~~d~R~~p~~~~~~v~~~i~~~~~~~~~~~~~~~ 309 (421)
T PRK08596 237 RH-WAVMKSYPGFPPGTNTINPAVIEGGR------HAAFIADECRLWITVHFYPNETYEQVIKEIEEYIGKVAAADPWLR 309 (421)
T ss_pred HH-HhhcccCccCCCCCcceeeeeeeCCC------CCCccCceEEEEEEeeeCCCCCHHHHHHHHHHHHHHHHhcChhhh
Confidence 32 21110000001123689999999987 899999999999999999999999999999988763211
Q ss_pred --CceEEEeecc-cccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCC
Q 013368 323 --NMTFEFKQRA-SLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTP 399 (444)
Q Consensus 323 --~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~ 399 (444)
..++++.... ........|++ .++.++++++++.+++++..+..+.+...+|+||++++..+|+|++.|||+...
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~- 387 (421)
T PRK08596 310 ENPPQFKWGGESMIEDRGEIFPSL-EIDSEHPAVKTLSSAHESVLSKNAILDMSTTVTDGGWFAEFGIPAVIYGPGTLE- 387 (421)
T ss_pred hCCceeEEecccccccccccCCCc-cCCCCchHHHHHHHHHHHHhCCCCeeeEEeeecchhhhhhcCCCEEEECCCccc-
Confidence 1222221000 00001123443 467789999999999999876554555667899999999999999999999643
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHHccc
Q 013368 400 ILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 432 (444)
Q Consensus 400 ~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~~ 432 (444)
.+|++||+++++++.+++++|..++.++++.+
T Consensus 388 -~~H~~~E~v~i~~~~~~~~~~~~~l~~~~~~~ 419 (421)
T PRK08596 388 -EAHSVNEKVEIEQLIEYTKVITAFIYEWCHTK 419 (421)
T ss_pred -ccCCCCceEEHHHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999999999999999998765
|
|
| >KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=418.80 Aligned_cols=394 Identities=49% Similarity=0.846 Sum_probs=348.0
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChh-HHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
.+...++.++++++||++-+.++.. ++++|+.++.+.+|..++.++...+.++++.+++|++|..+.|+|++|+||||+
T Consensus 23 e~~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~ 102 (420)
T KOG2275|consen 23 EENISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPV 102 (420)
T ss_pred ccchHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCC
Confidence 3467899999999999987777766 899999999999999998888777899999999999999999999999999999
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
..+.|+++||++..+++|.|||||++|||+..++.|+|++.|+..+.+++++|.+.|.+|||.|+..|++.+++..++.+
T Consensus 103 f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~ 182 (420)
T KOG2275|consen 103 FREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKK 182 (420)
T ss_pred CcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcc
Confidence 98999999999997569999999999999999999999999999999999999999999999997789999998666777
Q ss_pred CceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhch-hccC
Q 013368 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGL-KAEG 263 (444)
Q Consensus 185 ~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~-~~~~ 263 (444)
..+++++|+|...+..-..+.+++||..+++|++.|.+||+|.|....++.++.++++.+.+++..+++.+.+++ ...+
T Consensus 183 l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G~~GHss~~~~nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~~~ 262 (420)
T KOG2275|consen 183 LNLGFILDEGGATENDFATVFYAEKGPWWLKVTANGTPGHSSYPPPNTAIEKLEKLVESLEEFREKQVDLLASGPKLALG 262 (420)
T ss_pred cceeEEecCCCCCcccceeEEEEeeceeEEEEEecCCCCCCCCCCCccHHHHHHHHHHHHHHhHHHHHHHhhcCCceecc
Confidence 778999999977666656789999999999999999999999988889999999999999999877777776542 3456
Q ss_pred CceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHH-HHHhccCCCCceEEEeecccccccCCCCC
Q 013368 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI-VEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 264 ~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
..+|+|++.++||. +.|++|+..++.+|+|..+..+.+++.+++ ++...+...++.+++.... ....++
T Consensus 263 ~vtT~Nv~~i~GGv------~~N~~P~~~ea~~dirv~~~~d~~~i~~~l~~~w~~~~~eg~t~~f~~~~----~~~~~~ 332 (420)
T KOG2275|consen 263 DVTTINVGIINGGV------QSNVLPETFEAAFDIRVRPHVDVKAIRDQLEDEWAEEAGEGVTLEFSQKV----ILDYPP 332 (420)
T ss_pred ceeEEeeeeeeccc------ccCcCchhheeeeeeEeccCCCHHHHHHHHHHHhhhhcCCceEEeccCcc----cCCCCC
Confidence 78999999999998 999999999999999999999999999999 4444434455666666421 004445
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.+..+.++|++.++..++++.+++. .+..++|+||.++++..|+|++.|.|..+.+-..|..||+...+.+.+|+++|.
T Consensus 333 ~t~~~~s~p~w~~~~~a~~~~~~k~-~~~i~~gstdsr~~rn~gvp~~~fsp~~nt~~~~H~hnE~l~~~~~l~gi~~~~ 411 (420)
T KOG2275|consen 333 VTPTDDSNPFWTAFAGALKDEGGKG-YPEIGPGSTDSRHIRNEGVPAIGFSPIINTPMLLHDHNEFLNEKVFLRGIEIYY 411 (420)
T ss_pred CCCCCCCChHHHHHHHHHHHhcCcc-ceeecccccccchhhhcCcchhcccccccccceecchhhhhCchhhhhhhhHHH
Confidence 5556778899999999999999877 678889999999999999999999999887778999999999999999999999
Q ss_pred HHHHHHHc
Q 013368 423 SIIKAYAS 430 (444)
Q Consensus 423 ~~l~~l~~ 430 (444)
.++.+++.
T Consensus 412 ~~i~~~~~ 419 (420)
T KOG2275|consen 412 TIIVNLAN 419 (420)
T ss_pred HHHHhhcC
Confidence 98887753
|
|
| >PRK13983 diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=443.53 Aligned_cols=381 Identities=20% Similarity=0.308 Sum_probs=307.5
Q ss_pred CChhHHHHHHHhhhcccCCCCC---CChhHHHHHHHHHHHHCCCc-eEEEeecC----C--CCeEEEEecCCCCCCCcEE
Q 013368 25 KSDDSIIERFRAYLQIDTSQPN---PDYTNASKFILAQAEALSLE-SQTLEFAK----N--KPLILLKWPGSNPQLPSIL 94 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~---~~e~~~~~~l~~~l~~~G~~-~~~~~~~~----~--~~nl~~~~~g~~~~~~~i~ 94 (444)
...++++++|++|++|||+|+. .+|.+++++|.++|+++|++ ++.++..+ + ++|+++.++|.++ .++|+
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~-~~~ll 80 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDG-KRTLW 80 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCC-CCeEE
Confidence 3457899999999999999853 35889999999999999998 77655321 1 6899999976543 36999
Q ss_pred EEeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccH
Q 013368 95 LNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (444)
Q Consensus 95 l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (444)
|+||+||||.++ +.|+.+||.+.++ +|+|||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+..|+
T Consensus 81 l~~H~Dtvp~~~~~~W~~~p~~~~~~-~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~ 159 (400)
T PRK13983 81 IISHMDVVPPGDLSLWETDPFKPVVK-DGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGI 159 (400)
T ss_pred EEeeccccCCCCcccccCCCCcceee-CCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccH
Confidence 999999999975 7899999999997 99999999999999999999999999998878899999999999998864599
Q ss_pred HHHHhc--cccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHh-chh
Q 013368 174 EKFADS--HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRA 249 (444)
Q Consensus 174 ~~~~~~--~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~-l~~ 249 (444)
+++++. +.+.+.|++++.+.+ .|++ ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..|.. +..
T Consensus 160 ~~~~~~~~~~~~~~d~~i~~~~~--~~~~-~~i~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~ 236 (400)
T PRK13983 160 QYLLKKHPELFKKDDLILVPDAG--NPDG-SFIEIAEKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHE 236 (400)
T ss_pred HHHHhhcccccCCCCEEEEecCC--CCCC-ceeEEeecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999986 445556878877644 3554 467889999999999999999999999998 999999999999976 322
Q ss_pred hhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCC--CCceEE
Q 013368 250 SQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS--RNMTFE 327 (444)
Q Consensus 250 ~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~--~~~~~~ 327 (444)
. +.... ........+++++.+.+|. ...|+||++|++++|+|+.+.++.+++.++|+++++... .+.+++
T Consensus 237 ~-~~~~~--~~~~~~~~~~~~~~~~~g~-----~~~nvvp~~~~~~~diR~~p~~~~~~v~~~l~~~~~~~~~~~~~~v~ 308 (400)
T PRK13983 237 K-FNAKD--PLFDPPYSTFEPTKKEANV-----DNINTIPGRDVFYFDCRVLPDYDLDEVLKDIKEIADEFEEEYGVKIE 308 (400)
T ss_pred h-hcccc--cccCCCCcccccceeecCC-----cCCcccCCeeEEEEEEEeCCCCCHHHHHHHHHHHHHHhccccCccee
Confidence 1 11000 0000123456677776652 278999999999999999999999999999999887432 234555
Q ss_pred EeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCc
Q 013368 328 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNE 407 (444)
Q Consensus 328 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E 407 (444)
+... ....|++ .++.++++++++.+++++..+..+.+...+|++|+++++..|+|++.|||+.. .+|++||
T Consensus 309 ~~~~-----~~~~~~~-~~~~~~~~v~~l~~a~~~~~g~~~~~~~~~g~td~~~~~~~gip~v~~Gp~~~---~~H~~nE 379 (400)
T PRK13983 309 VEIV-----QREQAPP-PTPPDSEIVKKLKRAIKEVRGIEPKVGGIGGGTVAAFLRKKGYPAVVWSTLDE---TAHQPNE 379 (400)
T ss_pred EEEe-----eccCCcc-CCCCCcHHHHHHHHHHHHhcCCCceeeeecCcHHHHHHHHcCCCEEEeCCccc---cCCCCCc
Confidence 5431 1122332 46788999999999999986654455667889999999989999999999865 5999999
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 013368 408 FLNQAEYLKGIDIYESIIKA 427 (444)
Q Consensus 408 ~i~~~~l~~~~~~~~~~l~~ 427 (444)
+++++++.+++++|.+++..
T Consensus 380 ~v~i~~l~~~~~~~~~~~~~ 399 (400)
T PRK13983 380 YAKISNLIEDAKVFALLLLE 399 (400)
T ss_pred eeeHHHHHHHHHHHHHHHhc
Confidence 99999999999999998753
|
|
| >PRK09133 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=451.11 Aligned_cols=383 Identities=21% Similarity=0.324 Sum_probs=306.1
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee---cCCCCeEEEEecCCCCCCCcEEEEeeccc
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF---AKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~---~~~~~nl~~~~~g~~~~~~~i~l~~H~Dt 101 (444)
.+.++.+++|++|++|||+++.+++.++++||.++|+++|++++.++. ..+++|+++.++|+++ .++|+|+||+||
T Consensus 34 ~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~-~~~lll~~H~Dt 112 (472)
T PRK09133 34 ADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDP-KKPILLLAHMDV 112 (472)
T ss_pred hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCC-CCcEEEEeeccc
Confidence 467889999999999999986678899999999999999998654332 2367899999977654 378999999999
Q ss_pred ccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcc-cCccccHHHHHhcc
Q 013368 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE-IGGHDGAEKFADSH 180 (444)
Q Consensus 102 vp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE-~g~~~G~~~~~~~~ 180 (444)
||.+++.|+++||+++++ ||+|||||++|||++++++|.|++.|++.+..++++|.|+++++|| .| ..|++.+++++
T Consensus 113 Vp~~~~~W~~dPf~~~~~-dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g-~~G~~~l~~~~ 190 (472)
T PRK09133 113 VEAKREDWTRDPFKLVEE-NGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTP-MNGVAWLAENH 190 (472)
T ss_pred CCCChhcCCCCCCcceEe-CCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCc-cchHHHHHHHH
Confidence 999877899999999998 9999999999999999999999999998887788999999999999 56 47999999864
Q ss_pred c-cccCceEEEeccCC------CCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhh---
Q 013368 181 V-FNSLNVGIVLDEGL------ASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRAS--- 250 (444)
Q Consensus 181 ~-~~~~d~~~~~~~g~------~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~--- 250 (444)
. .-..|++++ +.+. .+|+. ..++.+++|..+++|+++|+++|||.|+..|||..+++++..|..+...
T Consensus 191 ~~~~~~~~~i~-e~~~~~~~~~gept~-~~i~~g~kG~~~~~i~v~G~~~Hss~p~~~nAi~~l~~~l~~l~~~~~~~~~ 268 (472)
T PRK09133 191 RDLIDAEFALN-EGGGGTLDEDGKPVL-LTVQAGEKTYADFRLEVTNPGGHSSRPTKDNAIYRLAAALSRLAAYRFPVML 268 (472)
T ss_pred hhccCeEEEEE-CCCccccCCCCCceE-EEeeeecceeEEEEEEEecCCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcc
Confidence 2 112477666 6543 24543 4678999999999999999999999987559999999999999864210
Q ss_pred ------hhHHH---------------H-------------h-chhccCCceeeeeeeeccCCCCCCCcccccccCceEEE
Q 013368 251 ------QFDLV---------------K-------------A-GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAG 295 (444)
Q Consensus 251 ------~~~~~---------------~-------------~-~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~ 295 (444)
.++.+ . . ........+|++++.+++|. ..|+||++|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~------~~NvVP~~a~~~ 342 (472)
T PRK09133 269 NDVTRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGH------AENALPQRATAN 342 (472)
T ss_pred CCccHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCC------cCccCCCceEEE
Confidence 01000 0 0 00000135789999999987 899999999999
Q ss_pred EEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhc-CCCCCceeec
Q 013368 296 FDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKAN-GKLGKPEIFP 374 (444)
Q Consensus 296 ~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~-~~~~~~~~~~ 374 (444)
+|+|+.|.++.+++.++|+++++. .++++++.. ...+. ...+.+.++++.+++++++.. +....+..++
T Consensus 343 lDiR~~p~~~~e~v~~~I~~~i~~--~~v~v~~~~-------~~~~~-~~~~~~~~l~~~l~~~~~~~~~g~~~~~~~~~ 412 (472)
T PRK09133 343 VNCRIFPGDTIEAVRATLKQVVAD--PAIKITRIG-------DPSPS-PASPLRPDIMKAVEKLTAAMWPGVPVIPSMST 412 (472)
T ss_pred EEEEeCCchhHHHHHHHHHHHhcC--CCEEEEEcc-------CCCCC-CCCCCCcHHHHHHHHHHHHHCCCCceeccccc
Confidence 999999999999999999998863 334443321 11222 235567899999999999875 4332445567
Q ss_pred CCcchHHHHhcCCCeEE----EccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 375 ASTDARYFRERGLPAIG----FSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 375 g~tD~~~~~~~gip~v~----~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
|+||++++...|+|++. |||+... .+|++||+++++++.+++++|..++..++.
T Consensus 413 ggtDa~~~~~~gip~~~~~~i~gp~~~~--~aH~~dE~v~i~~l~~~~~~l~~~l~~l~~ 470 (472)
T PRK09133 413 GATDGRYLRAAGIPTYGVSGLFGDPDDT--FAHGLNERIPVASFYEGRDFLYELVKDLAG 470 (472)
T ss_pred cccchHHHHhcCCCceeecCcccCcccc--cCCCCCCceeHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999984 6766554 799999999999999999999999998854
|
|
| >PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-55 Score=435.90 Aligned_cols=368 Identities=21% Similarity=0.305 Sum_probs=299.4
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC-C
Q 013368 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-S 107 (444)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~-~ 107 (444)
++++++++|++|||.| ++|.+++++|.++|+++|++++.++. .+++|+++.+ |. +.|+|+|+||+||||.++ +
T Consensus 3 ~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~n~~~~~-g~--~~~~i~l~~H~D~Vp~g~~~ 76 (375)
T PRK13009 3 DVLELAQDLIRRPSVT--PDDAGCQDLLAERLEALGFTCERMDF-GDVKNLWARR-GT--EGPHLCFAGHTDVVPPGDLE 76 (375)
T ss_pred hHHHHHHHHhCCCCCC--CchhhHHHHHHHHHHHcCCeEEEecc-CCCcEEEEEe-cC--CCCEEEEEeecccCCCCCcc
Confidence 5789999999999997 57889999999999999999886654 3578999987 54 348999999999999976 7
Q ss_pred CCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccc--ccC
Q 013368 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--NSL 185 (444)
Q Consensus 108 ~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~~~ 185 (444)
.|+++||.++++ ||++||||++|||++++++|.|++.|++.+.+++++|.|+++++||.++..|++.+++.... ...
T Consensus 77 ~w~~~Pf~~~~~-~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~ 155 (375)
T PRK13009 77 AWTSPPFEPTIR-DGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKI 155 (375)
T ss_pred cCCCCCCCcEEE-CCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCC
Confidence 899999999997 99999999999999999999999999988777889999999999998655699998764211 135
Q ss_pred ceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCC
Q 013368 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (444)
Q Consensus 186 d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~ 264 (444)
|++++.+.....+.+ ..++.+++|..+++|+++|+++|++.|+.+ ||+..+++++..|..+.... . ...-.
T Consensus 156 d~~i~~ep~~~~~~~-~~i~~g~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~------~-~~~~~ 227 (375)
T PRK13009 156 DYCIVGEPTSTERLG-DVIKNGRRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDE------G-NEFFP 227 (375)
T ss_pred CEEEEcCCCcccCCC-CeEEEecceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccC------C-CccCC
Confidence 777766432111111 247889999999999999999999999988 99999999999997643210 0 00112
Q ss_pred ceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCcc
Q 013368 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILT 344 (444)
Q Consensus 265 ~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 344 (444)
.++++++.|++|.. ..|+||++|++.+|+|++|.++.+++.++|++.++.. +.+++++.. ....|..
T Consensus 228 ~~~~~i~~i~~G~~-----~~nvip~~~~~~~diR~~~~~~~e~i~~~i~~~~~~~--~~~~~~~~~-----~~~~p~~- 294 (375)
T PRK13009 228 PTSLQITNIDAGTG-----ATNVIPGELEAQFNFRFSTEHTAESLKARVEAILDKH--GLDYTLEWT-----LSGEPFL- 294 (375)
T ss_pred CceEEEEEEecCCC-----CCcccCCcEEEEEEEecCCCCCHHHHHHHHHHHHHhc--CCCeEEEEe-----cCCCccc-
Confidence 35789999998742 6799999999999999999999999999999888632 345555431 1233433
Q ss_pred ccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHH
Q 013368 345 ATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESI 424 (444)
Q Consensus 345 ~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~ 424 (444)
.+ ++++++.+.+++++..+..+.+...+|+||++++...|+|++.|||+.. .+|++||+++++++.+++++|..+
T Consensus 295 -~~-~~~~~~~l~~a~~~~~g~~~~~~~~~g~tda~~~~~~g~p~v~~Gp~~~---~~H~~~E~i~~~~l~~~~~~~~~~ 369 (375)
T PRK13009 295 -TP-PGKLVDAVVAAIEAVTGITPELSTSGGTSDARFIADYGAQVVEFGPVNA---TIHKVNECVSVADLEKLTRIYERI 369 (375)
T ss_pred -CC-CcHHHHHHHHHHHHHhCCCceeeccCCCccHHHHHHcCCCeEEeccCcc---cCCCCCCcEEHHHHHHHHHHHHHH
Confidence 23 3899999999999876654355566788999999999999999999964 599999999999999999999999
Q ss_pred HHHHH
Q 013368 425 IKAYA 429 (444)
Q Consensus 425 l~~l~ 429 (444)
+.++.
T Consensus 370 ~~~~~ 374 (375)
T PRK13009 370 LERLL 374 (375)
T ss_pred HHHHh
Confidence 98875
|
|
| >TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=443.00 Aligned_cols=365 Identities=20% Similarity=0.344 Sum_probs=298.2
Q ss_pred HHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCceEEEeecCCCC----eEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 32 ERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFAKNKP----LILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 32 ~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~----nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
++|++|++|||+| ++++|.++++||+++|+++|++++.++...+.. |+++.+.|.+ ..|+|+|+|||||||.++
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~ill~~H~DtVp~~~ 80 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNG-NEKSLIFNGHYDVVPAGD 80 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCC-CCCEEEEecccccccCCC
Confidence 6799999999976 357899999999999999999988765432333 3677777653 358999999999999975
Q ss_pred -CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccC
Q 013368 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (444)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (444)
++|+++||++.++ +|++||||++|||++++++|.|++.|.+.+..++++|.|+|+++||.|+ .|++.+++++.+++.
T Consensus 81 ~~~w~~~Pf~~~~~-~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~G~~~~~~~~~~~~~ 158 (375)
T TIGR01910 81 LELWKTDPFKPVEK-DGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGE-AGTLYLLQRGYFKDA 158 (375)
T ss_pred hhhCcCCCCCcEEE-CCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCc-hhHHHHHHcCCCCCC
Confidence 8999999999997 9999999999999999999999999999877789999999999999886 699999988766556
Q ss_pred ceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCC
Q 013368 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264 (444)
Q Consensus 186 d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~ 264 (444)
|++++.+ |++...++.+++|..+++|+++|+++|+|.|+.+ ||+..+++++++|..+.....+.... .....
T Consensus 159 d~~i~~~-----~~~~~~v~~~~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~--~~~~~ 231 (375)
T TIGR01910 159 DGVLIPE-----PSGGDNIVIGHKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSY--GFIPG 231 (375)
T ss_pred CEEEECC-----CCCCCceEEEecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc--cccCC
Confidence 8777764 4434678899999999999999999999999988 99999999999998764321110000 01123
Q ss_pred ceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCC--CCceEEEeecccccccCCCCC
Q 013368 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS--RNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 265 ~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ 342 (444)
.++++++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++... .++++++... ...|.
T Consensus 232 ~~t~~i~~i~gG~------~~nviP~~~~~~~diR~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~ 299 (375)
T TIGR01910 232 PITFNPGVIKGGD------WVNSVPDYCEFSIDVRIIPEENLDEVKQIIEDVVKALSKSDGWLYENEPV------VKWSG 299 (375)
T ss_pred CccccceeEECCC------CcCcCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhcCcHHhhCCCe------eeecC
Confidence 5789999999987 89999999999999999999999999999999887432 3444444321 12231
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 420 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~ 420 (444)
....+.++++++++.+++++..+..+.+...+|+||++++++.|+|++.|||+... .+|++||+++++++.+++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~v~~~~~~~~~~~ 375 (375)
T TIGR01910 300 PNETPPDSRLVKALEAIIKKVRGIEPEVLVSTGGTDARFLRKAGIPSIVYGPGDLE--TAHQVNEYISIKNLVESTKV 375 (375)
T ss_pred CcCCCCCCHHHHHHHHHHHHHhCCCCeEeeeccchhHHHHHHcCCcEEEECCCCcc--ccCCCCceeEHHHHHHHhhC
Confidence 12467789999999999998755443555677999999999999999999998543 69999999999999998864
|
This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research. |
| >TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=433.86 Aligned_cols=365 Identities=21% Similarity=0.307 Sum_probs=296.3
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC-CCC
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKW 109 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~-~~W 109 (444)
+++|++|++|||+| ++|.++++||.++|+++||+++.++.. +++|+++.+ |. +.|+|+|+||+||||.++ +.|
T Consensus 2 ~~~l~~lv~ips~s--~~e~~~~~~i~~~l~~~G~~~~~~~~~-~~~~~~~~~-g~--~~~~i~~~~H~DtVp~~~~~~W 75 (370)
T TIGR01246 2 TELAKELISRPSVT--PNDAGCQDIIAERLEKLGFEIEWMHFG-DTKNLWATR-GT--GEPVLAFAGHTDVVPAGPEEQW 75 (370)
T ss_pred hHHHHHHhcCCCCC--cchHHHHHHHHHHHHHCCCEEEEEecC-CCceEEEEe-cC--CCcEEEEEccccccCCCCcccc
Confidence 57899999999997 678899999999999999998866543 567999986 43 348999999999999986 789
Q ss_pred ccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc--cccCce
Q 013368 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FNSLNV 187 (444)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~~~d~ 187 (444)
+++||++..+ ||++||||++|||+++++++.|++.+.+.+.+++++|+|+|+++||.++..|++.+++... ....|+
T Consensus 76 ~~~p~~~~~~-dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~ 154 (370)
T TIGR01246 76 SSPPFEPVER-DGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDY 154 (370)
T ss_pred ccCCCCcEEE-CCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCE
Confidence 9999999987 9999999999999999999999999988877788999999999999875469999886421 113577
Q ss_pred EEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCce
Q 013368 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (444)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~ 266 (444)
+++.+.+...+.+ ..++.+++|..+++++++|+++|++.|+.+ ||+..+++++..|..+... .. ......+
T Consensus 155 ~i~~ep~~~~~~~-~~i~~~~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~------~~-~~~~~~~ 226 (370)
T TIGR01246 155 CIVGEPSSVKKLG-DVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWD------EG-NEFFPPT 226 (370)
T ss_pred EEEcCCCCcccCC-ceEEEeeeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhc------cC-CccCCCC
Confidence 7776532211111 247889999999999999999999999988 9999999999998764211 00 0011235
Q ss_pred eeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCcccc
Q 013368 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTAT 346 (444)
Q Consensus 267 t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 346 (444)
+++++.+++|.. ..|+||++|++.+|+|+.|.++.+++.++|+++++.. +++++++.. ....|.. .
T Consensus 227 t~~i~~i~~g~~-----~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~--~~~~~v~~~-----~~~~p~~--~ 292 (370)
T TIGR01246 227 SLQITNIHAGTG-----ANNVIPGELYVQFNLRFSTEVSDEILKQRVEAILDQH--GLDYDLEWS-----LSGEPFL--T 292 (370)
T ss_pred ceEeeeeecCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHc--CCCEEEEEe-----cCCccee--C
Confidence 899999998852 5799999999999999999999999999999888632 345555431 1233332 3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 013368 347 DSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426 (444)
Q Consensus 347 ~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~ 426 (444)
+ ++++++.+.+++++..+..+.+...+|++|++++...|+|++.|||+.. .+|++||+++++++.+++++|..++.
T Consensus 293 ~-~~~~~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~~~~g~p~~~~Gp~~~---~~H~~~E~i~i~~l~~~~~~~~~~l~ 368 (370)
T TIGR01246 293 N-DGKLIDKAREAIEETNGIKPELSTGGGTSDGRFIALMGAEVVEFGPVNA---TIHKVNECVSIEDLEKLSDVYQDLLE 368 (370)
T ss_pred C-CCHHHHHHHHHHHHHhCCCCceecCCCCchHHHHHHcCCCEEEecCCcc---cCCCCCceeEHHHHHHHHHHHHHHHH
Confidence 4 8999999999999876654355566788999999999999999999975 48999999999999999999999997
Q ss_pred HH
Q 013368 427 AY 428 (444)
Q Consensus 427 ~l 428 (444)
+|
T Consensus 369 ~~ 370 (370)
T TIGR01246 369 NL 370 (370)
T ss_pred hC
Confidence 64
|
This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason. |
| >PRK08201 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=442.43 Aligned_cols=390 Identities=19% Similarity=0.263 Sum_probs=303.6
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----CChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCCCCCcEEEEe
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
.+.+.++.+++|++|++|||+|+. +++.++++||+++|+++|++ ++..+. .+++||++.+.|. ++.|+|+|+|
T Consensus 9 ~~~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~-~~~~~l~a~~~~~-~~~~~lll~g 86 (456)
T PRK08201 9 LRERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMET-AGHPIVYADWLHA-PGKPTVLIYG 86 (456)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEec-CCCCEEEEEecCC-CCCCEEEEEe
Confidence 455778999999999999999842 24678999999999999997 444443 3678999988654 3458999999
Q ss_pred ecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHH
Q 013368 98 HTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (444)
Q Consensus 98 H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (444)
|+||||+++ +.|+++||++.++ ||+|||||++||||+++++|.|++.|++.+..++++|.|++++|||.|+ .|+..+
T Consensus 87 H~DvVp~~~~~~W~~dPf~~~~~-~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~ 164 (456)
T PRK08201 87 HYDVQPVDPLNLWETPPFEPTIR-DGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGS-PNLDSF 164 (456)
T ss_pred ccCCcCCCchhcccCCCCceEeE-CCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCC-ccHHHH
Confidence 999999986 6799999999998 9999999999999999999999999988766778899999999999987 688888
Q ss_pred Hhcc--ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCC--ccCCCC-CC-CHHHHHHHHHHHHHhchhh
Q 013368 177 ADSH--VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLY-DN-SAMENLFKSIESVRRFRAS 250 (444)
Q Consensus 177 ~~~~--~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~--Hs~~p~-~g-nai~~~~~~i~~l~~l~~~ 250 (444)
+++. .+. .|++++.+.+...++. ..+++++||.++++|+++|+++ |||.|. .+ |||..++++++.|.++...
T Consensus 165 l~~~~~~~~-~d~~ii~e~~~~~~~~-~~i~~g~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~l~~~~~~ 242 (456)
T PRK08201 165 VEEEKDKLA-ADVVLISDTTLLGPGK-PAICYGLRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLASLHDEHGT 242 (456)
T ss_pred HHhhHHhcc-CCEEEEeCCCcCCCCC-EEEEEecCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHhcCCCCCC
Confidence 8753 233 4778887754332322 4699999999999999999998 998765 45 9999999999999764210
Q ss_pred ----------------hhHHHH----------hc-----hh---------ccCCceeeeeeeeccCCCCCCCcccccccC
Q 013368 251 ----------------QFDLVK----------AG-----LK---------AEGEVVSVNMAFLKAGTPSPNGFVMNLQPS 290 (444)
Q Consensus 251 ----------------~~~~~~----------~~-----~~---------~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~ 290 (444)
.+..+. +. .. .....+|++++.++||.. +++..|+||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~NvVP~ 320 (456)
T PRK08201 243 VAVEGFYDGVRPLTPEEREEFAALGFDEEKLKRELGVDELFGEEGYTALERTWARPTLELNGVYGGFQ--GEGTKTVIPA 320 (456)
T ss_pred EecCCcccCCCCCCHHHHHHHHhCCCCHHHHHhhcCCccccCCcchHHHHHHHhCCcEEEEeeecCCC--CCCCceEECc
Confidence 000000 00 00 001135889999998862 3335799999
Q ss_pred ceEEEEEeecCCCCCHHHHHHHHHHHhccC-CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCC
Q 013368 291 EAEAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGK 369 (444)
Q Consensus 291 ~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 369 (444)
+|++.+|+|++|.++.+++.++|+++++.. ..++++++.. ....|++ .++.++++++++.+++++..+..+.
T Consensus 321 ~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~~~~~v~~~~------~~~~~~~-~~~~~~~~~~~l~~a~~~~~g~~~~ 393 (456)
T PRK08201 321 EAHAKITCRLVPDQDPQEILDLIEAHLQAHTPAGVRVTIRR------FDKGPAF-VAPIDHPAIQAAARAYEAVYGTEAA 393 (456)
T ss_pred ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEE------CCCcCce-ecCCCCHHHHHHHHHHHHHhCCCce
Confidence 999999999999999999999999988742 2334555442 1233443 3677899999999999988665422
Q ss_pred ceeecCCc---chHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 370 PEIFPAST---DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 370 ~~~~~g~t---D~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
....|++ |+.+....|+|++.||||... .++|++||+++++++.+++++|..++.+++
T Consensus 394 -~~~~gg~~~~~~~~~~~~gip~v~~GpG~~~-~~~H~~nE~v~i~~l~~~~~~l~~~~~~~~ 454 (456)
T PRK08201 394 -FTRMGGSIPVVETFSSQLHIPIVLMGFGLPS-ENFHAPNEHFHLENFDKGLRTLVEYWHQLA 454 (456)
T ss_pred -ecCCCCcHHHHHHHHHHhCCCEEEecCCCCC-CCCCCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 2234455 577777789999999999532 269999999999999999999999999884
|
|
| >PRK07522 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=433.22 Aligned_cols=367 Identities=21% Similarity=0.247 Sum_probs=295.5
Q ss_pred hHHHHHHHhhhcccCCCCCCCh-hHHHHHHHHHHHHCCCceEEEeec-CCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 28 DSIIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFA-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e-~~~~~~l~~~l~~~G~~~~~~~~~-~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
.+.+++|++|++|||+| +++ .++++||.++|+++|+++++++.. .+++|+++.+.+. ..|+|+|+||+||||.+
T Consensus 4 ~~~~~~l~~lv~i~S~s--~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~--~~~~ill~~H~Dtv~~~ 79 (385)
T PRK07522 4 MSSLDILERLVAFDTVS--RDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPA--DRGGIVLSGHTDVVPVD 79 (385)
T ss_pred hhHHHHHHHHhCCCCcC--CCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCC--CCCeEEEEeecccccCC
Confidence 56899999999999997 444 599999999999999998765432 2468999998543 24899999999999998
Q ss_pred CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccc--c
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--N 183 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~ 183 (444)
++.|+.+||++.++ +|++||||++|||++++++|.|++.|.+.+ ++++|.|+|+++||.|+ .|++++++.... .
T Consensus 80 ~~~W~~~pf~~~~~-~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~dEE~g~-~G~~~l~~~~~~~~~ 155 (385)
T PRK07522 80 GQAWTSDPFRLTER-DGRLYGRGTCDMKGFIAAALAAVPELAAAP--LRRPLHLAFSYDEEVGC-LGVPSMIARLPERGV 155 (385)
T ss_pred CCCCCCCCCceEEE-CCEEEeccccccchHHHHHHHHHHHHHhCC--CCCCEEEEEEeccccCC-ccHHHHHHHhhhcCC
Confidence 88899999999997 999999999999999999999999998764 57899999999999886 799999975321 1
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
..|++++. +|+. ..++.+++|..+++|+++|+++|+|.|+.+ ||+..+++++..|+++....... .......
T Consensus 156 ~~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~-~~~~~~~ 228 (385)
T PRK07522 156 KPAGCIVG-----EPTS-MRPVVGHKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAP-GPFDALF 228 (385)
T ss_pred CCCEEEEc-----cCCC-CeeeeeecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhc-CCCCcCC
Confidence 24665553 4654 578899999999999999999999998888 99999999999998754321100 0000000
Q ss_pred -CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--------CCCCceEEEeeccc
Q 013368 263 -GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--------ASRNMTFEFKQRAS 333 (444)
Q Consensus 263 -~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--------~~~~~~~~~~~~~~ 333 (444)
...++++++.+++|. ..|+||++|++.+|+|+.+.++.+++.++|++.++. ..++++++++.
T Consensus 229 ~~~~~t~~i~~i~gG~------~~nviP~~a~~~~diR~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~v~~~~--- 299 (385)
T PRK07522 229 DPPYSTLQTGTIQGGT------ALNIVPAECEFDFEFRNLPGDDPEAILARIRAYAEAELLPEMRAVHPEAAIEFEP--- 299 (385)
T ss_pred CCCcceeEEeeeecCc------cccccCCceEEEEEEccCCCCCHHHHHHHHHHHHHhhcchhhhhhcCCCcEEEEe---
Confidence 123689999999886 889999999999999999999999999999988864 12456666654
Q ss_pred ccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013368 334 LHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 413 (444)
Q Consensus 334 ~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~ 413 (444)
....|++ ..+.++++++.+++++.+ . ......+++|+++++..|+|++.|||+... .+|++||++++++
T Consensus 300 ---~~~~~~~-~~~~~~~~v~~~~~~~~~----~-~~~~~~~~td~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i~i~~ 368 (385)
T PRK07522 300 ---LSAYPGL-DTAEDAAAARLVRALTGD----N-DLRKVAYGTEAGLFQRAGIPTVVCGPGSIE--QAHKPDEFVELAQ 368 (385)
T ss_pred ---ccCCCCC-CCCCCcHHHHHHHHHhCC----C-CcceEeeecchHHhccCCCCEEEECCCChh--hCCCCCccccHHH
Confidence 2234443 356678888888765433 2 122356789999999999999999998654 6999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013368 414 YLKGIDIYESIIKAYA 429 (444)
Q Consensus 414 l~~~~~~~~~~l~~l~ 429 (444)
+.+++++|..++..++
T Consensus 369 l~~~~~~~~~~~~~~~ 384 (385)
T PRK07522 369 LAACEAFLRRLLASLA 384 (385)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
|
|
| >PRK07906 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=436.90 Aligned_cols=376 Identities=27% Similarity=0.467 Sum_probs=296.3
Q ss_pred HHHHHhhhcccCCCCC----CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 31 IERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
+++|++|++|||+|+. ++|.++++||.++|+++|++++.++...+++|+++.++|.+++.++|+|+||+||||.++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 6789999999999732 578899999999999999999877655567899999977655457899999999999987
Q ss_pred CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc--cccc
Q 013368 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFNS 184 (444)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~~~ 184 (444)
+.|+++||++.++ ||++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+..|+++++++. .++.
T Consensus 82 ~~W~~~Pf~~~~~-dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~ 160 (426)
T PRK07906 82 ADWSVHPFSGEIR-DGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEG 160 (426)
T ss_pred ccCccCCCCceee-CCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccc
Confidence 7899999999997 999999999999999999999999999988888999999999999998756999998753 2332
Q ss_pred CceEEEeccCCC-----CcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhh--------
Q 013368 185 LNVGIVLDEGLA-----STTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQ-------- 251 (444)
Q Consensus 185 ~d~~~~~~~g~~-----~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~-------- 251 (444)
.+ .++.+.+.. .+.....++.+++|..+++|+++|+++|+|.|+..||+..+++++..|+++....
T Consensus 161 ~~-~ii~e~~~~~~~~~~~~~~~~i~~~~kG~~~~~v~v~G~~~Hss~p~~~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 239 (426)
T PRK07906 161 VT-EAISEVGGFSLTVPGRDRLYLIETAEKGLAWMRLTARGRAGHGSMVNDDNAVTRLAEAVARIGRHRWPLVLTPTVRA 239 (426)
T ss_pred hh-eEEECCCceeeccCCCccEEEEEeccceEEEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 22 334333221 1111235889999999999999999999999865599999999999997643210
Q ss_pred -hHHHHh--c----h-------hccC---------CceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHH
Q 013368 252 -FDLVKA--G----L-------KAEG---------EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (444)
Q Consensus 252 -~~~~~~--~----~-------~~~~---------~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~ 308 (444)
++.+.. + . ...+ ..+|++++.|+||. +.|+||++|++.+|+|+.|.++ ++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~------~~NviP~~~~~~~d~R~~p~~~-~~ 312 (426)
T PRK07906 240 FLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGY------KVNVIPGTAEAVVDGRFLPGRE-EE 312 (426)
T ss_pred HHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccC------ccccCCCceEEEEEEeECCCCc-HH
Confidence 000000 0 0 0000 13689999999987 8899999999999999999886 77
Q ss_pred HHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCC-CCCceeecCCcchHHHHhcCC
Q 013368 309 LERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK-LGKPEIFPASTDARYFRERGL 387 (444)
Q Consensus 309 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~-~~~~~~~~g~tD~~~~~~~gi 387 (444)
+.+.|++++. ..+++++.. . .|++ .++.++++++.+.+++++..+. .+.+...+|+||++++...|+
T Consensus 313 i~~~i~~~~~---~~v~~~~~~-------~-~~~~-~~~~~~~~v~~l~~a~~~~~~~~~~~~~~~~ggtDa~~~~~~g~ 380 (426)
T PRK07906 313 FLATVDELLG---PDVEREWVH-------R-DPAL-ETPFDGPLVDAMNAALLAEDPGARVVPYMLSGGTDAKAFSRLGI 380 (426)
T ss_pred HHHHHHHHhC---CCeEEEEec-------C-CCCC-CCCCCcHHHHHHHHHHHHHCCCCeEeeeeecccCcHHHHHhcCC
Confidence 8888877663 234444332 2 3333 3567899999999999988532 223445678999999999999
Q ss_pred CeEEEccCCCC-----CCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 013368 388 PAIGFSPMANT-----PILLHDHNEFLNQAEYLKGIDIYESIIKA 427 (444)
Q Consensus 388 p~v~~gp~~~~-----~~~~H~~~E~i~~~~l~~~~~~~~~~l~~ 427 (444)
|++.|||+... ...+|++||+++++++.+++++|..++..
T Consensus 381 p~~~~gp~~~~~~~~~~~~~H~~~E~v~~~~l~~~~~~~~~~l~~ 425 (426)
T PRK07906 381 RCYGFAPLRLPPDLDFAALFHGVDERVPVDALRFGVRVLDRFLRT 425 (426)
T ss_pred ceEEEeccccCccccccccCcCCCCceeHHHHHHHHHHHHHHHHh
Confidence 99999997521 13699999999999999999999999875
|
|
| >TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=430.09 Aligned_cols=357 Identities=20% Similarity=0.265 Sum_probs=288.2
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC--CCCeEEEEecCCCCCCCcEEEEeecccccCCCCCC
Q 013368 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (444)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~--~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W 109 (444)
++|++|++|||+|+ .++.++++||+++|+++|++++.++... +++|+++.+.++ +.++|+|+||+||||.+++.|
T Consensus 1 ~~l~~lv~i~S~s~-~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~--~~~~i~l~~H~Dtvp~~~~~w 77 (364)
T TIGR01892 1 EILTKLVAFDSTSF-RPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPS--GAGGLALSGHTDVVPYDDAAW 77 (364)
T ss_pred ChHHHhhCcCCcCC-ccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCC--CCCeEEEEcccccccCCCCcC
Confidence 46899999999973 2346899999999999999988765432 368999998543 347899999999999988899
Q ss_pred ccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEE
Q 013368 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (444)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~ 189 (444)
+++||++.++ +|++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||.|+ .|++++++++.+. .|+++
T Consensus 78 ~~~Pf~~~~~-~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~g~-~G~~~~~~~~~~~-~d~~i 152 (364)
T TIGR01892 78 TRDPFRLTEK-DGRLYGRGTCDMKGFLACALAAAPDLAAEQ--LKKPLHLALTADEEVGC-TGAPKMIEAGAGR-PRHAI 152 (364)
T ss_pred CCCCCcceee-CCEEEecCccccchHHHHHHHHHHHHHhcC--cCCCEEEEEEeccccCC-cCHHHHHHhcCCC-CCEEE
Confidence 9999999997 999999999999999999999999998753 67899999999999985 7999999876543 47666
Q ss_pred EeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceee
Q 013368 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSV 268 (444)
Q Consensus 190 ~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~ 268 (444)
+. +|++ ..++.+++|..+++|+++|+++|++.|+.| ||+..+++++..|..+....... ..........+++
T Consensus 153 ~~-----ep~~-~~~~~~~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~ 225 (364)
T TIGR01892 153 IG-----EPTR-LIPVRAHKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLRE-DLDEGFTPPYTTL 225 (364)
T ss_pred EC-----CCCC-ceeEEeeceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccC-CCCccCCCCCceE
Confidence 54 4654 456678999999999999999999999998 99999999999998764311000 0000000124689
Q ss_pred eeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC---CCCceEEEeecccccccCCCCCccc
Q 013368 269 NMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA---SRNMTFEFKQRASLHDKFGRPILTA 345 (444)
Q Consensus 269 ~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~ 345 (444)
+++.+++|. ..|+||++|++.+|+|+.|.++.+++.++|+++++.. .++++++++. ....|++ .
T Consensus 226 ~i~~i~gg~------~~nviP~~~~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~v~~~~------~~~~~~~-~ 292 (364)
T TIGR01892 226 NIGVIQGGK------AVNIIPGACEFVFEWRPIPGMDPEELLQLLETIAQALVRDEPGFEVQIEV------VSTDPGV-N 292 (364)
T ss_pred EEeeeecCC------CCcccCCeEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhhCCCceEEEEE------ccCCCCc-C
Confidence 999999987 8999999999999999999999999999999888642 3456666553 1234443 3
Q ss_pred cCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHH
Q 013368 346 TDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESI 424 (444)
Q Consensus 346 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~ 424 (444)
.++++++++++.+++.. . +...+++||++++...|+|++.|||+... .+|++||+++++++.+++++|+.+
T Consensus 293 ~~~~~~~v~~~~~~~~~----~--~~~~~~~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i~i~~l~~~~~~~~~~ 363 (364)
T TIGR01892 293 TEPDAELVAFLEELSGN----A--PEVVSYGTEAPQFQELGAEAVVCGPGDIR--QAHQPDEYVEIEDLVRCRAVLARL 363 (364)
T ss_pred CCCCCHHHHHHHHHhCC----C--CceecccccHHHHHhCCCcEEEECCCChH--hCCCCCceeeHHHHHHHHHHHHHh
Confidence 56688999888765422 2 23456789999999999999999999743 699999999999999999999876
|
This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes. |
| >PRK06446 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-54 Score=435.21 Aligned_cols=382 Identities=19% Similarity=0.238 Sum_probs=296.1
Q ss_pred hHHHHHHHhhhcccCCCCCCC-hhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 28 DSIIERFRAYLQIDTSQPNPD-YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~-e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
++.+++|++|++|||+|+.++ +.++++||.++|+++|++++.++.. +++|+++.+.+ + .+|+|+|+||+||||.++
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~-~~~~lia~~~~-~-~~~~vll~gH~DvVp~~~ 78 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTK-GHPVVYGEINV-G-AKKTLLIYNHYDVQPVDP 78 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecC-CCCEEEEEecC-C-CCCEEEEEecccCCCCCc
Confidence 578999999999999984322 2789999999999999999876653 67899999853 2 358999999999999987
Q ss_pred -CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc--ccc
Q 013368 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VFN 183 (444)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~~ 183 (444)
+.|+++||++.++ ||+|||||++|||++++++|.|++.|++.+ .++.+|.|+|+++||.|+ .|++.++++. .++
T Consensus 79 ~~~W~~~Pf~~~~~-dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~-~g~~~~l~~~~~~~~ 155 (436)
T PRK06446 79 LSEWKRDPFSATIE-NGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGS-PNLEDFIEKNKNKLK 155 (436)
T ss_pred cccccCCCCceEEE-CCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCC-HhHHHHHHHHHHHhC
Confidence 8899999999998 999999999999999999999999987765 578899999999999987 6888888753 233
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEee--cCCccCCCCCC-CHHHHHHHHHHHHHhchh-----------
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN-SAMENLFKSIESVRRFRA----------- 249 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G--~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~----------- 249 (444)
.|+++ ++.....+++...++.+++|..+++++++| +++|||.|+.+ ||+..+++++++|.++..
T Consensus 156 -~d~vi-~E~~~~~~~~~~~i~~~~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 233 (436)
T PRK06446 156 -ADSVI-MEGAGLDPKGRPQIVLGVKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDGEGRVLIPGFYDDV 233 (436)
T ss_pred -CCEEE-ECCCCccCCCCeEEEEecCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCCCCCEEccchhcCC
Confidence 57654 443333244445799999999999999999 99999998888 999999999999976421
Q ss_pred -----hhhHHHH----------h--c------------hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeec
Q 013368 250 -----SQFDLVK----------A--G------------LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRV 300 (444)
Q Consensus 250 -----~~~~~~~----------~--~------------~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~ 300 (444)
.....+. . + .......+|+|++.+++|.. ++...|+||++|++++|+|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~t~nv~~i~~g~~--~~~~~nvvP~~a~~~~d~R~ 311 (436)
T PRK06446 234 RELTEEERELLKKYDIDVEELRKALGFKELKYSDREKIAEALLTEPTCNIDGFYSGYT--GKGSKTIVPSRAFAKLDFRL 311 (436)
T ss_pred CCCCHHHHHHHHhCCCCHHHHHHHhCCccccCCCcccHHHHHHhCCcEEEeeeecccc--CCCCCcEecCceEEEEEEEc
Confidence 0000000 0 0 00011247899999988752 22267999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCce-eecCCcch
Q 013368 301 PPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPE-IFPASTDA 379 (444)
Q Consensus 301 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~-~~~g~tD~ 379 (444)
+|.++.+++.++|+++++.....+++++.. ...|.. ++.++++++++.+++++..+..+... ..+|++|+
T Consensus 312 ~p~~~~~~v~~~l~~~~~~~~~~~~~~~~~-------~~~p~~--~~~~~~~v~~l~~a~~~~~g~~~~~~~~~~g~~d~ 382 (436)
T PRK06446 312 VPNQDPYKIFELLKKHLQKVGFNGEIIVHG-------FEYPVR--TSVNSKVVKAMIESAKRVYGTEPVVIPNSAGTQPM 382 (436)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEcC-------Ccceee--cCCCCHHHHHHHHHHHHHhCCCCceecCCCCcchH
Confidence 999999999999999987432333343331 233433 56789999999999999865432332 23466788
Q ss_pred HHHHh-cCCCeE--EEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 380 RYFRE-RGLPAI--GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 380 ~~~~~-~gip~v--~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
++|.. .|+|++ .|||+... .++|++||+++++++.+++++|..++..++
T Consensus 383 ~~~~~~~gip~v~~~~g~g~~~-~~~H~~dE~i~i~~l~~~~~~~~~~~~~~~ 434 (436)
T PRK06446 383 GLFVYKLGIRDIVSAIGVGGYY-SNAHAPNENIRIDDYYKAIKHTEEFLKLYS 434 (436)
T ss_pred HHHHHHhCCCcceeecccCCCC-cCCcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence 88755 799976 36665432 379999999999999999999999998775
|
|
| >PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-54 Score=429.73 Aligned_cols=377 Identities=24% Similarity=0.367 Sum_probs=303.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCC--------CCeEEEEecCCCCCCCcEE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKN--------KPLILLKWPGSNPQLPSIL 94 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~~--------~~nl~~~~~g~~~~~~~i~ 94 (444)
++..++.+++|++|++|||+|++ +++.++++||.++|+++|++++..+...+ ++|+++.. +. +.|+|+
T Consensus 2 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~il 78 (394)
T PRK08651 2 EAMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARR-GS--GNPHLH 78 (394)
T ss_pred chhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEe-CC--CCceEE
Confidence 34568999999999999999854 45778999999999999999887654322 35678765 33 238999
Q ss_pred EEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
|+||+||||..+..|+.+||+++++ +|++||||++|||++++++|.|++.|++.+ +++|.|+|+++||.|+ .|++
T Consensus 79 l~~HlDtvp~~~~~~~~~Pf~~~~~-~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~-~G~~ 153 (394)
T PRK08651 79 FNGHYDVVPPGEGWSVNVPFEPKVK-DGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGG-TGTG 153 (394)
T ss_pred EEeeeeeecCCCCccccCCCCcEEE-CCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccc-hhHH
Confidence 9999999999854479999999997 999999999999999999999999998765 7999999999999986 7999
Q ss_pred HHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhH
Q 013368 175 KFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFD 253 (444)
Q Consensus 175 ~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~ 253 (444)
++++++.++ .|++++.+ |++...++.+++|..+++|+++|+++|++.|+.+ ||+..++++++.|.++......
T Consensus 154 ~~~~~~~~~-~d~~i~~~-----~~~~~~i~~~~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~ 227 (394)
T PRK08651 154 YLVEEGKVT-PDYVIVGE-----PSGLDNICIGHRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKS 227 (394)
T ss_pred HHHhccCCC-CCEEEEec-----CCCCCceEEecccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhc
Confidence 999876554 47677664 4442368889999999999999999999999988 9999999999999765321110
Q ss_pred HHHhchhccCCceeeeeee--eccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEe
Q 013368 254 LVKAGLKAEGEVVSVNMAF--LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFK 329 (444)
Q Consensus 254 ~~~~~~~~~~~~~t~~~~~--i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~ 329 (444)
... -.......++++++. +++|. ..|+||++|++.+|+|+.+.++.+++.++|+++++.. ..++++++.
T Consensus 228 ~~~-~~~~~~~~~~~~ig~~~i~gG~------~~nviP~~a~~~~diR~~~~~~~e~i~~~i~~~~~~~~~~~~~~~~i~ 300 (394)
T PRK08651 228 KYE-YDDERGAKPTVTLGGPTVEGGT------KTNIVPGYCAFSIDRRLIPEETAEEVRDELEALLDEVAPELGIEVEFE 300 (394)
T ss_pred ccc-ccccccCCCceeecceeeeCCC------CCCccCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHHHhhccCCCeeEE
Confidence 000 000112235677777 88876 8999999999999999999999999999999888642 234555555
Q ss_pred ecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccc
Q 013368 330 QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 409 (444)
Q Consensus 330 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i 409 (444)
. ....|+. ..+.++++++.+.++++++.+..+.+....|+||+++|+..|+|++.|||+... .+|++||++
T Consensus 301 ~------~~~~~~~-~~~~~~~l~~~~~~a~~~~~g~~~~~~~~~g~tD~~~~~~~gip~v~~Gpg~~~--~~H~~~E~i 371 (394)
T PRK08651 301 I------TPFSEAF-VTDPDSELVKALREAIREVLGVEPKKTISLGGTDARFFGAKGIPTVVYGPGELE--LAHAPDEYV 371 (394)
T ss_pred E------ecccCCc-cCCCCCHHHHHHHHHHHHHhCCCCceeeecCcccHHHHhhCCCcEEEECCCChH--hcCCCCcee
Confidence 3 1223333 356688999999999999655443556677999999999999999999998643 699999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHc
Q 013368 410 NQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 410 ~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+++++.+++++|.+++.+|++
T Consensus 372 ~~~~l~~~~~i~~~~i~~l~~ 392 (394)
T PRK08651 372 EVKDVEKAAKVYEEVLKRLAK 392 (394)
T ss_pred EHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999854
|
|
| >PRK05111 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=429.73 Aligned_cols=368 Identities=21% Similarity=0.293 Sum_probs=294.4
Q ss_pred hHHHHHHHhhhcccCCCCCC-----ChhHHHHHHHHHHHHCCCceEEEeec--CCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 28 DSIIERFRAYLQIDTSQPNP-----DYTNASKFILAQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~-----~e~~~~~~l~~~l~~~G~~~~~~~~~--~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
+++++++++|++|||+|+.. ++.++++||.++|+++|++++.++.. .+++|+++++ |.+ .++|+|+||+|
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~-g~~--~~~il~~~H~D 81 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASL-GSG--EGGLLLAGHTD 81 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEe-CCC--CCeEEEEeeec
Confidence 47999999999999998432 24679999999999999998876542 2567999998 543 25799999999
Q ss_pred cccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
|||.+++.|+.+||++.++ ||++||||++||||+++++|.|++.|++.+ ++++|.|+|+++||.|+ .|++++++++
T Consensus 82 vvp~~~~~W~~~Pf~~~~~-~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~g~-~G~~~~~~~~ 157 (383)
T PRK05111 82 TVPFDEGRWTRDPFTLTEH-DGKLYGLGTADMKGFFAFILEALRDIDLTK--LKKPLYILATADEETSM-AGARAFAEAT 157 (383)
T ss_pred eecCCCCcCcCCCCccEEE-CCEEEecccccccHHHHHHHHHHHHHhhcC--CCCCeEEEEEeccccCc-ccHHHHHhcC
Confidence 9999877899999999997 999999999999999999999999998653 67899999999999986 6999999876
Q ss_pred ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhch
Q 013368 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (444)
Q Consensus 181 ~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~ 259 (444)
.++ .|++++. +|+. ..++++++|..+++|+++|+++|+|.|+.| ||+..+++++..|..+....-+... .+
T Consensus 158 ~~~-~d~~i~~-----ep~~-~~~~~~~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~-~~ 229 (383)
T PRK05111 158 AIR-PDCAIIG-----EPTS-LKPVRAHKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYH-NP 229 (383)
T ss_pred CCC-CCEEEEc-----CCCC-CceeecccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCC-Cc
Confidence 554 4766654 4654 456789999999999999999999999998 9999999999999876421100000 00
Q ss_pred hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeeccccccc
Q 013368 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDK 337 (444)
Q Consensus 260 ~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 337 (444)
......+|++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|++.++.. ..+.++++... .
T Consensus 230 ~~~~~~~t~~i~~i~gg~------~~NvVP~~~~~~~diR~~p~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~~-----~ 298 (383)
T PRK05111 230 AFTVPYPTLNLGHIHGGD------APNRICGCCELHFDIRPLPGMTLEDLRGLLREALAPVSERWPGRITVAPL-----H 298 (383)
T ss_pred cCCCCCCceeEeeeecCC------cCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhhCCCeEEEecc-----c
Confidence 000135789999999987 8899999999999999999999999999999888642 23455555421 1
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHH
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKG 417 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~ 417 (444)
...|++ ..+.++++++.+.+++ +.. +...++++|+.++...|+|++.|||+... .+|++||+++++++.++
T Consensus 299 ~~~~~~-~~~~~~~l~~~~~~~~----g~~--~~~~~~~~Da~~~~~~g~p~v~~G~g~~~--~~H~~~E~v~~~~l~~~ 369 (383)
T PRK05111 299 PPIPGY-ECPADHQLVRVVEKLL----GHK--AEVVNYCTEAPFIQQLGCPTLVLGPGSIE--QAHQPDEYLELSFIKPT 369 (383)
T ss_pred cCCCCc-CCCCCCHHHHHHHHHh----CCC--CceeeeeccHHHHHhcCCCEEEECCCchH--hCcCCCCcccHHHHHHH
Confidence 233433 3556788888876654 222 22346789999999999999999998643 69999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 013368 418 IDIYESIIKAYAS 430 (444)
Q Consensus 418 ~~~~~~~l~~l~~ 430 (444)
+++|..++.+++.
T Consensus 370 ~~i~~~~~~~~~~ 382 (383)
T PRK05111 370 RELLRQLIHHFCL 382 (383)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998854
|
|
| >PRK13004 peptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=430.48 Aligned_cols=381 Identities=17% Similarity=0.189 Sum_probs=303.7
Q ss_pred cCCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 21 ~~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
++.+++.+++++++++|++|||+| ++|.+++++|.++|+++|+++..++ ..+|+++.+.+. .|+|+|++|+|
T Consensus 8 ~~~~~~~~~~~~~l~~lv~ips~s--~~e~~~a~~l~~~l~~~G~~~~~~~---~~~n~~a~~~~~---~~~i~~~~H~D 79 (399)
T PRK13004 8 MLAEKYKADMTRFLRDLIRIPSES--GDEKRVVKRIKEEMEKVGFDKVEID---PMGNVLGYIGHG---KKLIAFDAHID 79 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCcEEEEc---CCCeEEEEECCC---CcEEEEEeccC
Confidence 345667789999999999999996 7889999999999999999865443 456999988542 38999999999
Q ss_pred cccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 101 VVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 101 tvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
|||.++ +.|+++||++.++ +|++||||++|||++++++|.|++.|++.+..++++|.++|+++||.++..|+++++++
T Consensus 80 tVp~~~~~~w~~~P~~~~~~-~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 80 TVGIGDIKNWDFDPFEGEED-DGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred ccCCCChhhcccCCCccEEE-CCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHh
Confidence 999875 7899999999997 99999999999999999999999999998877889999999999996432578888876
Q ss_pred cccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhc
Q 013368 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (444)
Q Consensus 180 ~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~ 258 (444)
..+. .|++++.+ |+. ..++++++|..+++|+++|+++|+|.|+.| ||+..+++++..|..+..... .
T Consensus 159 ~~~~-~d~~i~~e-----~~~-~~i~~~~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~----~- 226 (399)
T PRK13004 159 DKIK-PDFVVITE-----PTD-LNIYRGQRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLK----E- 226 (399)
T ss_pred cCCC-CCEEEEcc-----CCC-CceEEecceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccc----c-
Confidence 4443 58777764 443 578899999999999999999999999998 999999999999987643210 0
Q ss_pred hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeec-cccc--
Q 013368 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQR-ASLH-- 335 (444)
Q Consensus 259 ~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~-~~~~-- 335 (444)
.......+++++.+.+|. ...|+||++|++.+|+|+.|.++.+++.++|+++.+....+.++++... .+.+
T Consensus 227 -~~~~~~~~~~v~~i~~g~-----~~~nvvP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~v~~~~~~~~~~~~ 300 (399)
T PRK13004 227 -DPFLGKGTLTVSDIFSTS-----PSRCAVPDSCAISIDRRLTVGETWESVLAEIRALPAVKKANAKVSMYNYDRPSYTG 300 (399)
T ss_pred -CCcCCCceEEEeeeecCC-----CCCCccCCEEEEEEEEcCCCCCCHHHHHHHHHHHHhhccccceEEEecccCCCccc
Confidence 001122468888887663 2789999999999999999999999999999888542222333333210 0000
Q ss_pred ---c-cCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHH-HhcCCCeEEEccCCCCCCCCCCCCcccc
Q 013368 336 ---D-KFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYF-RERGLPAIGFSPMANTPILLHDHNEFLN 410 (444)
Q Consensus 336 ---~-~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~-~~~gip~v~~gp~~~~~~~~H~~~E~i~ 410 (444)
+ ....|++ .+++++++++.+.+++++..+..+.+...++++|++.+ +..|+|++.|||+... .+|++||+++
T Consensus 301 ~~~~~~~~~p~~-~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~~~td~~~~~~~~Gip~v~~Gpg~~~--~aH~~nE~i~ 377 (399)
T PRK13004 301 LVYPTECYFPTW-LYPEDHEFVKAAVEAYKGLFGKAPEVDKWTFSTNGVSIAGRAGIPTIGFGPGKEP--LAHAPNEYTW 377 (399)
T ss_pred cccccccccccc-ccCCCCHHHHHHHHHHHHHhCCCCeecccccccCCeEEehhcCCCEEEECCCccc--ccCCCCceeE
Confidence 0 0123443 36778999999999999986544344456788888766 4679999999998653 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcc
Q 013368 411 QAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 411 ~~~l~~~~~~~~~~l~~l~~~ 431 (444)
++++.+++++|..++..+++.
T Consensus 378 i~~l~~~~~~~~~~~~~~~~~ 398 (399)
T PRK13004 378 KEQLVKAAAMYAAIPKSLLKK 398 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999853
|
|
| >TIGR03526 selenium_YgeY putative selenium metabolism hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-54 Score=428.59 Aligned_cols=377 Identities=16% Similarity=0.157 Sum_probs=298.8
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccc
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtv 102 (444)
.++..+++++++++|++|||++ ++|.+++++|.++|+++|+++...+ ...|+++.+ |. +.++|+|+||+|||
T Consensus 8 ~~~~~~~~~~~l~~Lv~ips~s--~~e~~~~~~l~~~l~~~g~~~~~~~---~~~~v~~~~-g~--~~~~l~l~~H~DtV 79 (395)
T TIGR03526 8 AEKYRGDMIRFLRDLVAIPSES--GDEGRVALRIKQEMEKLGFDKVEID---PMGNVLGYI-GH--GPKLIAMDAHIDTV 79 (395)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCceEEEc---CCCcEEEEe-CC--CCCEEEEEeecccc
Confidence 4456688999999999999996 6888999999999999999853332 345899987 43 33789999999999
Q ss_pred cCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc
Q 013368 103 PSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (444)
Q Consensus 103 p~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (444)
|+++ +.|+++||.+.++ ||++||||++|||++++++|.|++.|.+.+..++.++.++++++||.++..|..++++++.
T Consensus 80 p~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYED-EEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDK 158 (395)
T ss_pred CCCCcccccCCCCceEEE-CCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccC
Confidence 9876 7899999999997 9999999999999999999999999998876677899999999999432246777777654
Q ss_pred cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchh
Q 013368 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (444)
Q Consensus 182 ~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~ 260 (444)
+. .|++++. +|+. ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.... .. ..
T Consensus 159 ~~-~d~~i~~-----ep~~-~~i~~g~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~----~~-~~ 226 (395)
T TIGR03526 159 IK-PEFVVIT-----EPTD-MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL----VE-DP 226 (395)
T ss_pred CC-CCEEEec-----CCCC-ceEEEEcceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhh----cC-Cc
Confidence 44 5777765 3654 578899999999999999999999999999 99999999999998764311 00 00
Q ss_pred ccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeec-cccc----
Q 013368 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQR-ASLH---- 335 (444)
Q Consensus 261 ~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~-~~~~---- 335 (444)
.. ...+++++.+++|.. ..|+||++|++++|+|+.|.++.+++.++|+++++.....+++++... .+.+
T Consensus 227 ~~-~~~~~~v~~i~~g~~-----~~nviP~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (395)
T TIGR03526 227 FL-GKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAEVEMYEYDRPSYTGLV 300 (395)
T ss_pred cc-CccceeeeeeecCCC-----CCCccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHhcCCcceEEEeccccccccccc
Confidence 11 135789999987642 789999999999999999999999999999988763222333333210 0000
Q ss_pred -c-cCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcch-HHHHhcCCCeEEEccCCCCCCCCCCCCccccHH
Q 013368 336 -D-KFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA-RYFRERGLPAIGFSPMANTPILLHDHNEFLNQA 412 (444)
Q Consensus 336 -~-~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~-~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~ 412 (444)
. ....|++ .++.++++++++.+++++..+..+.....++++|+ .++++.|+|++.|||+... ++|++||+++++
T Consensus 301 ~~~~~~~p~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~--~aH~~dE~i~i~ 377 (395)
T TIGR03526 301 YPTECYFPTW-VLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDED--QAHAPNEKTWKE 377 (395)
T ss_pred cccccccCcc-ccCCCCHHHHHHHHHHHHHhCCCCceeeeeeecccceehhhcCCCEEEECCcchh--hccCCCceEEHH
Confidence 0 0023333 36778999999999999987765344455677888 5667789999999998643 699999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013368 413 EYLKGIDIYESIIKAYA 429 (444)
Q Consensus 413 ~l~~~~~~~~~~l~~l~ 429 (444)
++.+++++|..++..++
T Consensus 378 ~l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03526 378 DLVKAAAMYAAIPTVYL 394 (395)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999886
|
SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types. |
| >TIGR03320 ygeY M20/DapE family protein YgeY | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-54 Score=429.06 Aligned_cols=376 Identities=15% Similarity=0.164 Sum_probs=297.5
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccccc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp 103 (444)
++..+++++++++|++|||++ ++|.++++||.++|+++|++...++ .+.|+++.+ |. +.|+|+|+||+||||
T Consensus 9 ~~~~~~~~~~~~~lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~---~~~n~~~~~-g~--~~~~l~l~~H~DtVp 80 (395)
T TIGR03320 9 KKYRGDMIRFLRDLVAIPSES--GDEKRVAERIKEEMEKLGFDKVEID---PMGNVLGYI-GH--GPKLIAMDAHIDTVG 80 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCCC--CchHHHHHHHHHHHHHhCCcEEEEC---CCCCEEEEe-CC--CCcEEEEEecccccC
Confidence 445688999999999999986 6788999999999999999753332 346899987 43 237899999999999
Q ss_pred CCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccc
Q 013368 104 SEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (444)
Q Consensus 104 ~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (444)
+++ +.|+++||.+.++ ||++||||++|||++++++|.|++.|++.+..++.++.|+++++||.++..+.+++++...+
T Consensus 81 ~~~~~~w~~~Pf~~~~~-~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03320 81 IGDSKQWQFDPYEGYED-EEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI 159 (395)
T ss_pred CCCccccccCCCceEEE-CCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC
Confidence 875 7899999999998 99999999999999999999999999988877788999999999997542345666665434
Q ss_pred ccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhc
Q 013368 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (444)
Q Consensus 183 ~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~ 261 (444)
. .|++++.+ |+. ..++.+++|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.... ... ..
T Consensus 160 ~-~d~~iv~e-----p~~-~~i~~g~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~----~~~-~~ 227 (395)
T TIGR03320 160 K-PEFVVITE-----PTD-MNIYRGQRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANL----VED-PF 227 (395)
T ss_pred C-CCEEEEcC-----CCc-cceEEecceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhh----cCC-cc
Confidence 3 57777754 554 578899999999999999999999999999 99999999999998754311 000 01
Q ss_pred cCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeec-cccc-----
Q 013368 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQR-ASLH----- 335 (444)
Q Consensus 262 ~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~-~~~~----- 335 (444)
. ...+++++.+++|.. ..|+||++|++.+|+|+.|.++.+++.++|++++......+++++... .+.+
T Consensus 228 ~-~~~t~~v~~i~~g~~-----~~NviP~~~~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (395)
T TIGR03320 228 L-GKGTLTVSEIFFSSP-----SRCAVADGCTISIDRRLTWGETWEYALEQIRNLPAVQGAEAKVEMYNYDRPSYTGLVY 301 (395)
T ss_pred c-CcCceeeeeeecCCC-----CcCccCCEEEEEEEEecCCCCCHHHHHHHHHHHHhhcCCCceEeeeccCccccccccc
Confidence 1 135788999887642 789999999999999999999999999999988753222234433210 0000
Q ss_pred c-cCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcch-HHHHhcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013368 336 D-KFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDA-RYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 413 (444)
Q Consensus 336 ~-~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~-~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~ 413 (444)
+ ....|++ .++.++++++++.++++++.+..+.....++++|+ ++++..|+|++.|||+... ++|++|||+++++
T Consensus 302 ~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~p~v~~Gpg~~~--~aH~~nE~v~i~~ 378 (395)
T TIGR03320 302 PTECYFPTW-VLPEDHLITKAALETYKRLFGKEPGVDKWTFSTNGVSIMGRHGIPVIGFGPGDED--QAHAPNEKTWKED 378 (395)
T ss_pred ccccccCcc-ccCCCCHHHHHHHHHHHHHhCCCCceeecceecccceehhhcCCCEEEECCCchh--hccCCCcEEEHHH
Confidence 0 0123333 36778999999999999987655344455677887 5677889999999999753 7999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 013368 414 YLKGIDIYESIIKAYA 429 (444)
Q Consensus 414 l~~~~~~~~~~l~~l~ 429 (444)
+.+++++|..++..++
T Consensus 379 l~~~~~~~~~~~~~~~ 394 (395)
T TIGR03320 379 LVRAAAMYAAIPTVYL 394 (395)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999876
|
Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown. |
| >PRK07338 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=430.84 Aligned_cols=367 Identities=19% Similarity=0.255 Sum_probs=298.1
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecC--------------CCCeEEEEecCC
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK--------------NKPLILLKWPGS 86 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~--------------~~~nl~~~~~g~ 86 (444)
..+.+.+++++.|++|++|||+|.. .++.++++||+++|+++|++++.++... ..+||++++.+.
T Consensus 11 ~~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~a~~~~~ 90 (402)
T PRK07338 11 LIDDRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPALHVSVRPE 90 (402)
T ss_pred HHhhhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCeEEEEECCC
Confidence 3456788999999999999998632 1246899999999999999988654321 226999998543
Q ss_pred CCCCCcEEEEeecccccCCCCCCccCCCcce--ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecC
Q 013368 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAH--LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (444)
Q Consensus 87 ~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~--~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (444)
. .++|+|+||+||||+++ +||++. ++ ||++||||++|||++++++|.|++.|.+.+.++++++.|+|+++
T Consensus 91 ~--~~~lll~gH~DvVp~~~-----~Pf~~~~~~~-~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~d 162 (402)
T PRK07338 91 A--PRQVLLTGHMDTVFPAD-----HPFQTLSWLD-DGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLINPD 162 (402)
T ss_pred C--CccEEEEeecCccCCCC-----CcccCCeEee-CCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEECC
Confidence 2 35799999999999852 799875 76 99999999999999999999999999888777788999999999
Q ss_pred cccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCC-CCCC-CHHHHHHHHHH
Q 013368 165 EEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDN-SAMENLFKSIE 242 (444)
Q Consensus 165 EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p~~g-nai~~~~~~i~ 242 (444)
||.|+ .|++.+++++.. ..+++++++.+. + ...+..+++|..+++|+++|+++|+|. |+.+ ||+..++++++
T Consensus 163 EE~g~-~g~~~~~~~~~~-~~~~~i~~ep~~--~--~~~v~~~~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~~~i~ 236 (402)
T PRK07338 163 EEIGS-PASAPLLAELAR-GKHAALTYEPAL--P--DGTLAGARKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAAELAL 236 (402)
T ss_pred cccCC-hhhHHHHHHHhc-cCcEEEEecCCC--C--CCcEEeecceeEEEEEEEEeEcccCCCCcccCccHHHHHHHHHH
Confidence 99986 699988886432 347778875321 1 246788899999999999999999996 7888 99999999999
Q ss_pred HHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--
Q 013368 243 SVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA-- 320 (444)
Q Consensus 243 ~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-- 320 (444)
+|+++... ...+|++++.+++|. ..|+||++|++++|+|+.|.++.+++.++|+++++..
T Consensus 237 ~l~~l~~~------------~~~~t~~vg~i~gG~------~~nvVP~~a~~~~d~R~~~~~~~~~v~~~i~~~~~~~~~ 298 (402)
T PRK07338 237 ALHALNGQ------------RDGVTVNVAKIDGGG------PLNVVPDNAVLRFNIRPPTPEDAAWAEAELKKLIAQVNQ 298 (402)
T ss_pred HHHhhhcc------------CCCcEEEEEEEecCC------CCceeccccEEEEEeccCCHHHHHHHHHHHHHHHhcccc
Confidence 99875421 123689999999987 8999999999999999999999999999999998753
Q ss_pred CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeE-EEccCCCCC
Q 013368 321 SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAI-GFSPMANTP 399 (444)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v-~~gp~~~~~ 399 (444)
..++++++.. ....|++.....+.+++++++++.++.+.+. .....+|++|++++...|+|++ .|||+..
T Consensus 299 ~~~~~~~~~~------~~~~~p~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~tDa~~~~~~giP~v~~~Gpg~~-- 369 (402)
T PRK07338 299 RHGVSLHLHG------GFGRPPKPIDAAQQRLFEAVQACGAALGLTI-DWKDSGGVCDGNNLAAAGLPVVDTLGVRGG-- 369 (402)
T ss_pred CCCeEEEEEc------cccCCCCCCCcchHHHHHHHHHHHHHcCCCc-ccccCCccchHHHHhhcCCCeEeccCCCCC--
Confidence 3456665542 1233443223345589999999888876544 4455678999999999999999 7999854
Q ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 400 ILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 400 ~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
.+|++|||++++++.+++++|+.++.+++.
T Consensus 370 -~~H~~~E~v~i~~l~~~~~~~~~~l~~~~~ 399 (402)
T PRK07338 370 -NIHSEDEFVILDSLVERAQLSALILMRLAQ 399 (402)
T ss_pred -CCCCccceEehhhHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999998853
|
|
| >PRK07473 carboxypeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=421.66 Aligned_cols=363 Identities=15% Similarity=0.232 Sum_probs=293.3
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCCh---hHHHHHHHHHHHHCCCceEEEeecCCC-CeEEEEecCCCCCCCcEEEEe
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPDY---TNASKFILAQAEALSLESQTLEFAKNK-PLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e---~~~~~~l~~~l~~~G~~~~~~~~~~~~-~nl~~~~~g~~~~~~~i~l~~ 97 (444)
....+.++++++|++|++|||++ +++ .++++|+.++|+++|++++.++...+. +|+++.+.+.+++.|+|+|+|
T Consensus 5 ~~~~~~~~~~~~l~~Lv~i~S~s--~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~g 82 (376)
T PRK07473 5 NLPFDSEAMLAGLRPWVECESPT--WDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAG 82 (376)
T ss_pred cCCcCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEe
Confidence 34567889999999999999997 444 367789999999999999876543332 589998865433458999999
Q ss_pred ecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHH
Q 013368 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (444)
|+||||+. ..|+.+||. ++ +|++||||++|||++++++|.|+++|.+.+..++.+|.|+|+++||.|+ .|++.++
T Consensus 83 H~DtV~~~-~~~~~~p~~--~~-~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~g~~~~~ 157 (376)
T PRK07473 83 HMDTVHPV-GTLEKLPWR--RE-GNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGT-PSTRDLI 157 (376)
T ss_pred cCCCCCCC-CCccCCCeE--EE-CCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCC-ccHHHHH
Confidence 99999875 359999995 66 9999999999999999999999999998887777899999999999986 7999999
Q ss_pred hccccccCceEEEeccCCCCcCC-cceeeecccccEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhhHH
Q 013368 178 DSHVFNSLNVGIVLDEGLASTTE-DYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDL 254 (444)
Q Consensus 178 ~~~~~~~~d~~~~~~~g~~~p~~-~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~ 254 (444)
+++.. ..|++++.+ |+. ...++.+++|..+++|+++|+++|+| .|+.| ||+..+++++.+|+.+..
T Consensus 158 ~~~~~-~~d~~iv~e-----p~~~~~~v~~~~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~----- 226 (376)
T PRK07473 158 EAEAA-RNKYVLVPE-----PGRPDNGVVTGRYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT----- 226 (376)
T ss_pred HHhhc-cCCEEEEeC-----CCCCCCCEEEECeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC-----
Confidence 86433 358888886 443 23689999999999999999999987 58888 999999999999986531
Q ss_pred HHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccc
Q 013368 255 VKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASL 334 (444)
Q Consensus 255 ~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (444)
..++++++.|++|. ..|+||++|++.+++|....+..+++.+++.+.+. ...++++++..
T Consensus 227 ---------~~~~~~vg~i~gg~------~~n~VP~~~~~~~d~r~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~---- 286 (376)
T PRK07473 227 ---------EDCTFSVGIVHGGQ------WVNCVATTCTGEALSMAKRQADLDRGVARMLALSG-TEDDVTFTVTR---- 286 (376)
T ss_pred ---------CCceEeEeeEEcCC------CCcCCCCceEEEEEEEeCCHhHHHHHHHHHHHhhC-cCCCeEEEEEc----
Confidence 12578999999987 89999999999999999888888888888776665 23455666553
Q ss_pred cccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEE-EccCCCCCCCCCCCCccccHHH
Q 013368 335 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIG-FSPMANTPILLHDHNEFLNQAE 413 (444)
Q Consensus 335 ~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~-~gp~~~~~~~~H~~~E~i~~~~ 413 (444)
....|++.....+.++++.+.++.+..+.+. .....+|+||+++++..|+|++. |||+.. .+|++|||+++++
T Consensus 287 --~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~tDa~~~~~~giP~v~g~Gpg~~---~~H~~dE~v~i~~ 360 (376)
T PRK07473 287 --GVTRPVWEPDAGTMALYEKARAIAGQLGLSL-PHGSAGGGSDGNFTGAMGIPTLDGLGVRGA---DYHTLNEHIEVDS 360 (376)
T ss_pred --cccCCCCCCChhHHHHHHHHHHHHHHcCCCC-ccccCccccHhhhHHhcCCCEEEeccCCCC---CCCCCCceEeccc
Confidence 1234444222223478888888877766554 44456789999999999999995 999864 5899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013368 414 YLKGIDIYESIIKAY 428 (444)
Q Consensus 414 l~~~~~~~~~~l~~l 428 (444)
+.+++++|+.++..+
T Consensus 361 l~~~~~vl~~~l~~~ 375 (376)
T PRK07473 361 LAERGRLMAGLLATL 375 (376)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998754
|
|
| >PRK09104 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-53 Score=432.36 Aligned_cols=393 Identities=20% Similarity=0.234 Sum_probs=304.1
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEee
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H 98 (444)
++.+.++.+++|++|++|||+|+.. ++.+++++|+++|+++|++++.++.. +++||++.+.|.+++.|+|+|+||
T Consensus 12 ~~~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~-~~~~l~a~~~g~~~~~~~lll~gH 90 (464)
T PRK09104 12 IDANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTP-GHPMVVAHHEGPTGDAPHVLFYGH 90 (464)
T ss_pred HHHhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecC-CCCEEEEEecCCCCCCCEEEEEec
Confidence 4557889999999999999998432 24688999999999999999877654 678999999765445689999999
Q ss_pred cccccCCC-CCCccCCCcceecCCC-----eEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcccc
Q 013368 99 TDVVPSEP-SKWSHHPFGAHLDSQG-----NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (444)
Q Consensus 99 ~Dtvp~~~-~~W~~~Pf~~~~~~~g-----~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (444)
+||||.++ +.|+++||++.++ ++ +|||||++||||+++++|.|++.|++.+.+++++|.|+++++||.|+ .|
T Consensus 91 ~DvVp~~~~~~W~~~Pf~~~~~-~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g 168 (464)
T PRK09104 91 YDVQPVDPLDLWESPPFEPRIK-ETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGS-PS 168 (464)
T ss_pred ccCCCCCCcccCCCCCCcceEe-cCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCC-cc
Confidence 99999987 7799999999997 65 59999999999999999999999999776788999999999999997 58
Q ss_pred HHHHHhccc-cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEee--cCCccCC-CCCC-CHHHHHHHHHHHHHhc
Q 013368 173 AEKFADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAK-LYDN-SAMENLFKSIESVRRF 247 (444)
Q Consensus 173 ~~~~~~~~~-~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G--~~~Hs~~-p~~g-nai~~~~~~i~~l~~l 247 (444)
+..++.+.. ....|++++.+.+...++ ...++++++|.++++|+++| +++|||. |+.+ ||+..+++++.+|.+.
T Consensus 169 ~~~~l~~~~~~~~~d~~iv~E~~~~~~~-~~~i~~~~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~~~l~~l~~~ 247 (464)
T PRK09104 169 LVPFLEANAEELKADVALVCDTGMWDRE-TPAITTSLRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLTRILAGLHDE 247 (464)
T ss_pred HHHHHHhhHHhcCCCEEEEeCCCCCCCC-CeEEEeecCCeEEEEEEEEeCCCCccccccCCccCCHHHHHHHHHHhccCC
Confidence 877776532 113588888885433222 34788999999999999999 6899997 5667 9999999999998763
Q ss_pred hhh-------------------hhHH-------HHh--c---h---------hccCCceeeeeeeeccCCCCCCCccccc
Q 013368 248 RAS-------------------QFDL-------VKA--G---L---------KAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (444)
Q Consensus 248 ~~~-------------------~~~~-------~~~--~---~---------~~~~~~~t~~~~~i~~G~~~~~~~~~n~ 287 (444)
... .++. +.. + + ......+|++++.+++|.. +++..|+
T Consensus 248 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~gg~~--~~~~~nv 325 (464)
T PRK09104 248 TGRVTLPGFYDGVEELPPEILAQWKALGFTAEAFLGPVGLSIPAGEKGRSVLEQIWSRPTCEINGIWGGYT--GEGFKTV 325 (464)
T ss_pred CCCEeCCccccCCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccCcccHHHHHHHhhCCeEEEeccccCCC--CCCCccE
Confidence 110 0000 000 0 0 0001246899999998863 2236799
Q ss_pred ccCceEEEEEeecCCCCCHHHHHHHHHHHhccC-CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCC
Q 013368 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 366 (444)
Q Consensus 288 ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~ 366 (444)
||++|++++|+|++|.++.+++.++|+++++.. ..+.++++.. ....|+. .++.++++++.+.+++++..+.
T Consensus 326 vP~~~~~~~diR~~p~~~~~~v~~~i~~~l~~~~~~~~~v~~~~------~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~ 398 (464)
T PRK09104 326 IPAEASAKVSFRLVGGQDPAKIREAFRAYVRARLPADCSVEFHD------HGGSPAI-ALPYDSPALAAAKAALSDEWGK 398 (464)
T ss_pred ecCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEe------cCCCCce-ECCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988632 2344555442 1233443 4677899999999999988765
Q ss_pred CCCceeecCCc-chHHHH-hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 367 LGKPEIFPAST-DARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 367 ~~~~~~~~g~t-D~~~~~-~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
.+.....+|++ |++.|. ..|+|++.||||... ..+|++||+++++++.+++++|..++..++
T Consensus 399 ~~~~~~~~g~~~~~~~~~~~~gip~v~~g~G~~~-~~aH~~nE~i~i~~l~~~~~~~~~ll~~~~ 462 (464)
T PRK09104 399 PAVLIGSGGSIPIVGDFKRILGMDSLLVGFGLDD-DRIHSPNEKYDLESFHKGIRSWARILAALA 462 (464)
T ss_pred CceecCCCCcHHHHHHHHHHhCCCEEEecCCCCC-CCCcCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 42332333333 355554 469999999997432 369999999999999999999999998875
|
|
| >PRK06133 glutamate carboxypeptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=426.69 Aligned_cols=370 Identities=18% Similarity=0.239 Sum_probs=298.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecC-CCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAK-NKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~-~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
.+.+.+++++++++|++|||+|+. .++.++++||+++|+++|++++.++... ..+|+++.++|. +.|+|+|+||+|
T Consensus 32 ~~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~--~~~~ill~~H~D 109 (410)
T PRK06133 32 AQQEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGT--GKRRIMLIAHMD 109 (410)
T ss_pred HHHhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCC--CCceEEEEeecC
Confidence 345667899999999999999743 2345899999999999999988765422 357999999765 248999999999
Q ss_pred cccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
|||.. ..|+++||. ++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+ .|++.++++.
T Consensus 110 ~Vp~~-~~w~~~Pf~--~~-~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~G~~~~~~~~ 184 (410)
T PRK06133 110 TVYLP-GMLAKQPFR--ID-GDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGS-PGSRELIAEL 184 (410)
T ss_pred ccCCC-CccCCCCEE--EE-CCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCC-ccHHHHHHHH
Confidence 99986 459999996 65 9999999999999999999999999998887778999999999999886 6999999864
Q ss_pred ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhc
Q 013368 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (444)
Q Consensus 181 ~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~ 258 (444)
. ...|++++.+++. ++ ..++.+++|..+++|+++|+++||| .|+.| ||+..+++++..|+++...
T Consensus 185 ~-~~~d~~i~~ep~~--~~--~~v~~~~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~~~-------- 251 (410)
T PRK06133 185 A-AQHDVVFSCEPGR--AK--DALTLATSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLGDP-------- 251 (410)
T ss_pred h-ccCCEEEEeCCCC--CC--CCEEEeccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhccCC--------
Confidence 3 3458888876321 11 3578899999999999999999986 69888 9999999999998765321
Q ss_pred hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc-CCCCceEEEeeccccccc
Q 013368 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEFKQRASLHDK 337 (444)
Q Consensus 259 ~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 337 (444)
...++++++.++||. ..|+||++|++.+|+|+.|.++.+++.++|+++++. ...+++++++. .
T Consensus 252 ----~~~~t~~~~~i~gG~------~~nvIP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~------~ 315 (410)
T PRK06133 252 ----AKGTTLNWTVAKAGT------NRNVIPASASAQADVRYLDPAEFDRLEADLQEKVKNKLVPDTEVTLRF------E 315 (410)
T ss_pred ----CCCeEEEeeEEECCC------CCceeCCccEEEEEEEECCHHHHHHHHHHHHHHHhccCCCCeEEEEEe------c
Confidence 123678999999987 899999999999999999999999999999999875 23456666653 1
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCCCc--eeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHH
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLGKP--EIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYL 415 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~--~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~ 415 (444)
...|++.....+.++++++.++.++.+... .+ ...+|++|+++++..|+|++.+|+|..+ .++|++||+++++++.
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~g~tDa~~~~~~gip~v~~g~G~~~-~~aH~~nE~i~i~~~~ 393 (410)
T PRK06133 316 RGRPPLEANAASRALAEHAQGIYGELGRRL-EPIDMGTGGGTDAAFAAGSGKAAVLEGFGLVG-FGAHSNDEYIELNSIV 393 (410)
T ss_pred cccCCcccCcchHHHHHHHHHHHHHcCCCc-cccccCCCCCchHHHHHhcCCCceEecccCCC-CCCCCCCcEEEcccHH
Confidence 234443222334578888888887765443 22 4567899999999999998875443222 2699999999999999
Q ss_pred HHHHHHHHHHHHHHc
Q 013368 416 KGIDIYESIIKAYAS 430 (444)
Q Consensus 416 ~~~~~~~~~l~~l~~ 430 (444)
+++++|..++.++++
T Consensus 394 ~~~~~~~~~~~~~~~ 408 (410)
T PRK06133 394 PRLYLLTRMIMELSR 408 (410)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998864
|
|
| >PRK08262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=429.91 Aligned_cols=385 Identities=25% Similarity=0.365 Sum_probs=295.8
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCCh-------hHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEE
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNPDY-------TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILL 95 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e-------~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l 95 (444)
...+.++.+++|++|++|||+|+..+. .++++||+++|+.+|++++.+... ..|+++.++|.+++.++|+|
T Consensus 39 ~~~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~--~~~vv~~~~g~~~~~~~ill 116 (486)
T PRK08262 39 VAVDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVG--GHSLLYTWKGSDPSLKPIVL 116 (486)
T ss_pred CcCCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEEC--CccEEEEEECCCCCCCeEEE
Confidence 345678899999999999999853222 257888999999999988776653 35888888776554489999
Q ss_pred EeecccccCCC---CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcccc
Q 013368 96 NSHTDVVPSEP---SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (444)
Q Consensus 96 ~~H~Dtvp~~~---~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (444)
+||+||||.++ ..|+++||+++++ +|+|||||++||||+++++|.|++.|++.+.+++++|.++|+++||.|+ .|
T Consensus 117 ~gH~DvVp~~~~~~~~W~~~Pf~~~~~-dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~-~G 194 (486)
T PRK08262 117 MAHQDVVPVAPGTEGDWTHPPFSGVIA-DGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGG-LG 194 (486)
T ss_pred ECcccccCCCCCCcccCccCCCceEee-CCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCC-cC
Confidence 99999999974 5799999999997 9999999999999999999999999999887789999999999999987 59
Q ss_pred HHHHHhccccccCceEEEeccC----------CCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHH
Q 013368 173 AEKFADSHVFNSLNVGIVLDEG----------LASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIE 242 (444)
Q Consensus 173 ~~~~~~~~~~~~~d~~~~~~~g----------~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~ 242 (444)
++.+++.....+.+..++++.+ ...|+ ..+..+++|..+++|+++|+++|||.|+..||+..++++++
T Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~p~--~~i~~~~kG~~~~~i~v~G~~~Hss~p~~~nai~~l~~~l~ 272 (486)
T PRK08262 195 ARAIAELLKERGVRLAFVLDEGGAITEGVLPGVKKPV--ALIGVAEKGYATLELTARATGGHSSMPPRQTAIGRLARALT 272 (486)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCceecccccCCCCceE--EeeEEeeeeeEEEEEEEecCCCCCCCCCCCCHHHHHHHHHH
Confidence 9988864211111222222221 11233 25778899999999999999999998766799999999999
Q ss_pred HHHhchhh---------hhHHHHhc---------------------------hhccCCceeeeeeeeccCCCCCCCcccc
Q 013368 243 SVRRFRAS---------QFDLVKAG---------------------------LKAEGEVVSVNMAFLKAGTPSPNGFVMN 286 (444)
Q Consensus 243 ~l~~l~~~---------~~~~~~~~---------------------------~~~~~~~~t~~~~~i~~G~~~~~~~~~n 286 (444)
.|+++... .++.+... .......+|++++.|+||. ..|
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~------~~N 346 (486)
T PRK08262 273 RLEDNPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSP------KDN 346 (486)
T ss_pred HHhhCCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCC------ccc
Confidence 99874210 11111000 0001124789999999986 889
Q ss_pred cccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCC
Q 013368 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 366 (444)
Q Consensus 287 ~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~ 366 (444)
+||++|++.+|+|++|.++.+++.++|+++++.. ++++++.. ....|++ ..+.++++++.+.+++++.++.
T Consensus 347 vIP~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~--~~~v~~~~------~~~~~~~-~~~~~~~lv~~l~~a~~~~~g~ 417 (486)
T PRK08262 347 VLPQRATATVNFRILPGDSVESVLAHVRRAVADD--RVEIEVLG------GNSEPSP-VSSTDSAAYKLLAATIREVFPD 417 (486)
T ss_pred cCCCccEEEEEEEeCCCCCHHHHHHHHHHHhccC--ceEEEEec------CCCCCCC-CCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999988643 44554442 1123333 3567899999999999998764
Q ss_pred -CCCceeecCCcchHHHHhcC-----CCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 367 -LGKPEIFPASTDARYFRERG-----LPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 367 -~~~~~~~~g~tD~~~~~~~g-----ip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
...+....|+||++++...+ +|++.|||++.. .+|++||+++++++.+++++|..++..+++
T Consensus 418 ~~~~~~~~~g~tDa~~~~~~~p~~~~~~~~~~gpg~~~--~~Ht~dE~i~i~~l~~~~~i~~~~l~~~~~ 485 (486)
T PRK08262 418 VVVAPYLVVGATDSRHYSGISDNVYRFSPLRLSPEDLA--RFHGTNERISVANYARMIRFYYRLIENAAG 485 (486)
T ss_pred CccccceecccccHHHHHHhcCCeEEECCccCCccccc--CCCCCCCceeHHHHHHHHHHHHHHHHHhhc
Confidence 22334567899999998763 344455665433 699999999999999999999999998865
|
|
| >PRK07907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-53 Score=427.41 Aligned_cols=390 Identities=19% Similarity=0.229 Sum_probs=298.9
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCC----CChhHHHHHHHHHHHHCCC-ceEEEeecCCCCeEEEEecCCCCCCCcEEEE
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPN----PDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~----~~e~~~~~~l~~~l~~~G~-~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~ 96 (444)
+.+.+.++++++|++|++|||+|+. .++.++++||.++|+++|+ +++.++ .++++|+++.+++.. +.|+|+|+
T Consensus 12 ~i~~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~nl~a~~~~~~-~~~~lll~ 89 (449)
T PRK07907 12 RVAELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVS-ADGAPAVIGTRPAPP-GAPTVLLY 89 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEe-cCCCCEEEEEecCCC-CCCEEEEE
Confidence 4556788999999999999999853 2467899999999999998 777665 236789999987643 35899999
Q ss_pred eecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHH
Q 013368 97 SHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (444)
Q Consensus 97 ~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (444)
||+||||+++ +.|+++||++.++ ||+|||||++|||++++++|.|++.| +.+++++|.|+++++||.|+ .|+++
T Consensus 90 gH~DvVp~~~~~~W~~~Pf~~~~~-~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~-~g~~~ 164 (449)
T PRK07907 90 AHHDVQPPGDPDAWDSPPFELTER-DGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGS-PSLER 164 (449)
T ss_pred cccCCCCCCCccccCCCCceeEEE-CCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCC-ccHHH
Confidence 9999999976 6899999999998 99999999999999999999999998 33567899999999999987 69999
Q ss_pred HHhccc-cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEe--ecCCccCCC-CCC-CHHHHHHHHHHHHHhchhh
Q 013368 176 FADSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKAR--GAPGHGAKL-YDN-SAMENLFKSIESVRRFRAS 250 (444)
Q Consensus 176 ~~~~~~-~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~--G~~~Hs~~p-~~g-nai~~~~~~i~~l~~l~~~ 250 (444)
++++.. ....|++++.+.+.... +.+.+++++||..+++++++ |+++|||.| ..+ ||+..+++++.+|.++...
T Consensus 165 ~l~~~~~~~~~d~~iv~E~~~~~~-~~p~i~~~~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~~l~~~~~~ 243 (449)
T PRK07907 165 LLAEHPDLLAADVIVIADSGNWSV-GVPALTTSLRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLATLHDEDGN 243 (449)
T ss_pred HHHhchHhhcCCEEEEecCCcCCC-CCeEEEEecCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHHhhCCCCCC
Confidence 998632 12358888887543211 12358899999999999998 889999974 445 9999999999999764210
Q ss_pred ----------hh-----H--HHHh------c---------hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEe
Q 013368 251 ----------QF-----D--LVKA------G---------LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298 (444)
Q Consensus 251 ----------~~-----~--~~~~------~---------~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~ 298 (444)
.+ + .... + .......+|++++.|++|. ++...|+||++|++++|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~---~g~~~nvIP~~a~~~~di 320 (449)
T PRK07907 244 VAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPP---VAGASNALPPSARARLSL 320 (449)
T ss_pred EeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCC---CCCCCCEecCceEEEEEE
Confidence 00 0 0000 0 0000135688999998753 344889999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhccCCC-CceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCc
Q 013368 299 RVPPTTDAESLERRIVEEWAPASR-NMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST 377 (444)
Q Consensus 299 R~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~t 377 (444)
|+.|.++.+++.+.|+++++...+ +.+++++.. ....|. .++.++++++.+.+++++..+..+.....+|++
T Consensus 321 R~~p~~~~e~v~~~l~~~l~~~~~~~~~~~~~~~-----~~~~p~--~~~~~~~~~~~l~~a~~~~~g~~~~~~~~~g~~ 393 (449)
T PRK07907 321 RVAPGQDAAEAQDALVAHLEAHAPWGAHVTVERG-----DAGQPF--AADASGPAYDAARAAMREAWGKDPVDMGMGGSI 393 (449)
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEC-----CCcCce--eCCCCCHHHHHHHHHHHHHhCCCceecCCCCcH
Confidence 999999999999999998874322 445555431 123343 356789999999999999866543333334443
Q ss_pred c-hHHHHh-c-CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 378 D-ARYFRE-R-GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 378 D-~~~~~~-~-gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+ .+.+.. . ++|++.|||+... .++|++||+++++++.+++++|+.++..+..
T Consensus 394 ~~~~~~~~~~~~~~~v~~Gpg~~~-~~aH~~nE~i~i~~l~~~~~~~~~~l~~~~~ 448 (449)
T PRK07907 394 PFIAELQEAFPQAEILVTGVEDPK-TRAHSPNESVHLGELERAAVAEALLLARLAA 448 (449)
T ss_pred HHHHHHHHhcCCCcEEEeccCCCC-CCCcCCCCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 3 233433 3 5899999999642 2699999999999999999999999998853
|
|
| >PRK08737 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=413.65 Aligned_cols=353 Identities=20% Similarity=0.239 Sum_probs=274.5
Q ss_pred hhHHHHHHHhhhcccCCCCC--CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 27 DDSIIERFRAYLQIDTSQPN--PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
.++.+++|++|++|||.++. .++.++++||+++|+ |++++.++...+++|+++. .| .|+|+|+||+||||.
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~-~g----~~~lll~gH~DtVp~ 77 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAV-RG----TPKYLFNVHLDTVPD 77 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEE-cC----CCeEEEEeeeCCCCC
Confidence 45789999999999998753 346889999999997 9988877654467899986 33 268999999999999
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
++ .|+++||.+.++ +|+|||||++|||++++++|.|++. +.++|.|+|++|||.|+..|++.+++.+. +
T Consensus 78 ~~-~w~~~Pf~~~~~-~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~ 146 (364)
T PRK08737 78 SP-HWSADPHVMRRT-DDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--P 146 (364)
T ss_pred CC-CCCCCCCceEEE-CCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--C
Confidence 74 799999999997 9999999999999999999999863 35789999999999886468889888653 3
Q ss_pred CceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCC-CCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 185 ~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p-~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
.|++++. +|+. ..++.+++|..+++|+++|+++|+|.| +.| |||..+++++.++.++.... ..+.. ..
T Consensus 147 ~~~~iv~-----Ept~-~~~~~~~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~---~~~~~-~~ 216 (364)
T PRK08737 147 YEAVLVA-----EPTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESL---AHARF-GG 216 (364)
T ss_pred CCEEEEc-----CCCC-ceeEEecceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhh---hhhcc-CC
Confidence 5776665 5775 678999999999999999999999998 478 99999999998765432111 00000 01
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
....+++++.++||. +.|+||++|++++|+|+.|.++.+++.++|+++++.. ...+++... ....|+
T Consensus 217 ~~~~t~~vg~i~GG~------~~NvVP~~a~~~~d~R~~p~~~~e~v~~~i~~~~~~~--~~~~~~~~~-----~~~~~~ 283 (364)
T PRK08737 217 LTGLRFNIGRVEGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFAEPA--AATFEETFR-----GPSLPS 283 (364)
T ss_pred CCCCceEEeeEecCC------CCCcCCCceEEEEEeeeCCCCCHHHHHHHHHHHHHHc--CCceEEEec-----cCCCCC
Confidence 124589999999997 8999999999999999999999999999998776532 233333220 112222
Q ss_pred ccccCCCChHHHHH-HHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLL-EEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 343 ~~~~~~~~~l~~~~-~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
. ..++ ++++..+ .++.++.+... ....+++||+++|+..|+|++.||||... ++|++||+++++++.+++++|
T Consensus 284 ~-~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~tDa~~~~~~Gip~v~~GpG~~~--~aHt~dE~i~i~~l~~~~~~~ 357 (364)
T PRK08737 284 G-DIAR-AEERRLAARDVADALDLPI--GNAVDFWTEASLFSAAGYTALVYGPGDIA--QAHTADEFVTLDQLQRYAESV 357 (364)
T ss_pred c-ccCc-chHHHHHHHHHHhhhcCCC--CceeccccCHHHHHHcCCCEEEECCCChh--hccCCCcceeHHHHHHHHHHH
Confidence 2 1222 3566555 44444444332 23456789999999999999999999653 799999999999999999999
Q ss_pred HHHHH
Q 013368 422 ESIIK 426 (444)
Q Consensus 422 ~~~l~ 426 (444)
..++.
T Consensus 358 ~~~~~ 362 (364)
T PRK08737 358 HRIIN 362 (364)
T ss_pred HHHhc
Confidence 99875
|
|
| >PRK00466 acetyl-lysine deacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=409.42 Aligned_cols=338 Identities=22% Similarity=0.242 Sum_probs=280.1
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
..++.+++|++|++|||+| ++|.++++||.++|+++|++++.++. .|++. .| .++|+|+||+||||.
T Consensus 8 ~~~~~~~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~~~----~~~~~--~g----~~~lll~gH~DtVp~- 74 (346)
T PRK00466 8 VKQKAKELLLDLLSIYTPS--GNETNATKFFEKISNELNLKLEILPD----SNSFI--LG----EGDILLASHVDTVPG- 74 (346)
T ss_pred HHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEEecC----CCcEe--cC----CCeEEEEeccccCCC-
Confidence 3478899999999999975 78899999999999999998876542 36553 23 267999999999984
Q ss_pred CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccC
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (444)
+|++.++ +|+|||||++|||++++++|.|++.|.+.+ .++.|++++|||.|+ .|++++++++ . ..
T Consensus 75 -------~~~~~~~-~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~-~G~~~l~~~~-~-~~ 139 (346)
T PRK00466 75 -------YIEPKIE-GEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTS-IGAKELVSKG-F-NF 139 (346)
T ss_pred -------CCCceee-CCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCC-ccHHHHHhcC-C-CC
Confidence 2566776 999999999999999999999999998765 458999999999885 6999999875 3 35
Q ss_pred ceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCc
Q 013368 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (444)
Q Consensus 186 d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~ 265 (444)
|.+++. +|++...++++++|..+++|+++|+++|+|.|+. ||+..+++++..|.++... ...
T Consensus 140 d~~i~~-----ep~~~~~i~~~~kG~~~~~i~v~G~~~Has~p~~-nAi~~~~~~l~~l~~~~~~------------~~~ 201 (346)
T PRK00466 140 KHIIVG-----EPSNGTDIVVEYRGSIQLDIMCEGTPEHSSSAKS-NLIVDISKKIIEVYKQPEN------------YDK 201 (346)
T ss_pred CEEEEc-----CCCCCCceEEEeeEEEEEEEEEEeeccccCCCCc-CHHHHHHHHHHHHHhcccc------------CCC
Confidence 776665 4665456899999999999999999999998754 9999999999988754211 123
Q ss_pred eeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccc
Q 013368 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTA 345 (444)
Q Consensus 266 ~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 345 (444)
++++++.++||. ..|+||++|++++|+|+.|.++.+++.++|++.+.. +++++. ...|+. .
T Consensus 202 ~t~~~~~i~gG~------~~NvvP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~----~~~~~~--------~~~~~~-~ 262 (346)
T PRK00466 202 PSIVPTIIRAGE------SYNVTPAKLYLHFDVRYAINNKRDDLISEIKDKFQE----CGLKIV--------DETPPV-K 262 (346)
T ss_pred CcceeeEEecCC------cCcccCCceEEEEEEEeCCCCCHHHHHHHHHHHHhh----CcEeec--------cCCCCc-c
Confidence 578999999987 899999999999999999999999999999888863 344333 233333 3
Q ss_pred cCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 013368 346 TDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425 (444)
Q Consensus 346 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l 425 (444)
++.++++++++.+++++.+.++ .+...+|+||++++++.++|++.|||+... ++|++|||++++++.+++++|..++
T Consensus 263 ~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tD~~~~~~~~~~~v~fGpg~~~--~aH~~nE~i~i~~l~~~~~~~~~~i 339 (346)
T PRK00466 263 VSINNPVVKALMRALLKQNIKP-RLVRKAGTSDMNILQKITTSIATYGPGNSM--LEHTNQEKITLDEIYIAVKTYMLAI 339 (346)
T ss_pred cCCCCHHHHHHHHHHHHhCCCc-eEEecCCcCcHHHHHHhCCCEEEECCCCcc--cccCCCceeeHHHHHHHHHHHHHHH
Confidence 6678999999999999875543 555667899999999999899999998754 7999999999999999999999999
Q ss_pred HHHHcc
Q 013368 426 KAYASY 431 (444)
Q Consensus 426 ~~l~~~ 431 (444)
..++..
T Consensus 340 ~~l~~~ 345 (346)
T PRK00466 340 EELWQK 345 (346)
T ss_pred HHHHhc
Confidence 988653
|
|
| >PRK07079 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=418.61 Aligned_cols=385 Identities=18% Similarity=0.227 Sum_probs=294.0
Q ss_pred hHHHHHHHhhhcccCCCCC-CChhHHHHHHH----HHHHHCCCceEEEeec--CCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 28 DSIIERFRAYLQIDTSQPN-PDYTNASKFIL----AQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~----~~l~~~G~~~~~~~~~--~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
++.+++|++|++|||+|+. .++.++++|+. ++|+++|++++.++.. .+++||++.+.+.+ +.|+|+|+||+|
T Consensus 17 ~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~~-~~~~lll~gH~D 95 (469)
T PRK07079 17 GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIEDD-ALPTVLIYGHGD 95 (469)
T ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCCC-CCCEEEEEcccC
Confidence 5799999999999999853 34556777764 5899999999876643 36789999985432 348999999999
Q ss_pred cccCCCCCCc--cCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc-CCCCcceEEEEeecCcccCccccHHHHH
Q 013368 101 VVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-GFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (444)
Q Consensus 101 tvp~~~~~W~--~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~-~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (444)
|||.+++.|+ ++||+++++ ||++||||++||||+++++|.|+++|.+. +.+++++|.|++++|||.|+ .|+++++
T Consensus 96 vVp~~~~~W~~~~~Pf~~~~~-dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~-~G~~~l~ 173 (469)
T PRK07079 96 VVRGYDEQWREGLSPWTLTEE-GDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEIGS-PGLAEVC 173 (469)
T ss_pred CCCCChHHhcccCCCCccccc-CCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCC-ccHHHHH
Confidence 9998777899 599999998 99999999999999999999999998764 46788999999999999997 6999999
Q ss_pred hccc--cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeec--CCccCCCCCC---CHHHHHHHHHHHHHhchhh
Q 013368 178 DSHV--FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGA--PGHGAKLYDN---SAMENLFKSIESVRRFRAS 250 (444)
Q Consensus 178 ~~~~--~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~--~~Hs~~p~~g---nai~~~~~~i~~l~~l~~~ 250 (444)
+++. +. .|++++.+.+...++. ..+++++||..+++|+++|+ +.||+. +.| ||+..++.++..+.+....
T Consensus 174 ~~~~~~~~-~d~~iv~e~~~~~~~~-~~i~~g~kG~~~~~v~v~G~~~~~hs~~-~~g~~~nai~~l~~ai~~l~~~~~~ 250 (469)
T PRK07079 174 RQHREALA-ADVLIASDGPRLSAER-PTLFLGSRGAVNFRLRVNLRDGAHHSGN-WGGLLRNPGTVLAHAIASLVDARGR 250 (469)
T ss_pred HHhHHhcC-CCEEEEeCCCccCCCC-eEEEEecceEEEEEEEEeeCCCCCCCCc-cccccCCHHHHHHHHHHHhCCCCCC
Confidence 8752 33 5888887754433332 56999999999999999998 456664 433 9999999999988542100
Q ss_pred -------------hh-HHHHh-----ch-----------------hccCCceeeeeeeeccCCCCCCCcccccccCceEE
Q 013368 251 -------------QF-DLVKA-----GL-----------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEA 294 (444)
Q Consensus 251 -------------~~-~~~~~-----~~-----------------~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~ 294 (444)
.. ..+.. +. ...-..+|+|++.|++|.. ....|+||++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nv~~i~gG~~---~~~~NvVP~~a~~ 327 (469)
T PRK07079 251 IQVPGLRPPPLPAAVRAALADITVGGGPGDPAIDPDWGEPGLTPAERVFGWNTLEVLAFKTGNP---DAPVNAIPGSARA 327 (469)
T ss_pred EecCCccCCCCCHHHHHHHHhCCCchhhhccCcccccCCCCcCHHHHHhhCCceEEEeeecCCC---CCcceEecCceEE
Confidence 00 00000 00 0001135789999999852 1257999999999
Q ss_pred EEEeecCCCCCHHHHHHHHHHHhccCC-CCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCcee-
Q 013368 295 GFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEI- 372 (444)
Q Consensus 295 ~~d~R~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~- 372 (444)
++|+|++|.++.+++.++|+++++... ..+++++.. ...|. .++.++++++.+.+++++..+..+....
T Consensus 328 ~vdiR~~P~~~~e~v~~~l~~~i~~~~~~~v~~~~~~-------~~~p~--~~~~~~~~v~~l~~a~~~~~g~~~~~~~~ 398 (469)
T PRK07079 328 VCQLRFVVGTDWENLAPHLRAHLDAHGFPMVEVTVER-------GSPAT--RLDPDDPWVRWALASIARTTGKKPALLPN 398 (469)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC-------CCCce--ecCCCCHHHHHHHHHHHHHhCCCCceecC
Confidence 999999999999999999999987432 234444331 23333 3677899999999999998665423222
Q ss_pred ecCCcchHHHHh-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 373 FPASTDARYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 373 ~~g~tD~~~~~~-~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.+|++|+++|.. .|+|++.||++..+ ..+|++||+++++++.+++++|..++..++..
T Consensus 399 ~~g~~d~~~~~~~~giP~v~~g~~~~~-~~~H~~dE~v~l~~l~~~~~~~~~~~~~~~~~ 457 (469)
T PRK07079 399 LGGSLPNDVFADILGLPTLWVPHSYPA-CSQHAPNEHLLASVAREGLQIMAGLFWDLGEQ 457 (469)
T ss_pred CCcchhHHHHHHHhCCCEEEecCCCCC-ccCcCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 346679888875 69999987654322 25799999999999999999999999999654
|
|
| >PRK08652 acetylornithine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=404.69 Aligned_cols=343 Identities=20% Similarity=0.254 Sum_probs=282.8
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCC
Q 013368 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPS 107 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~ 107 (444)
+++++++++|++|||+| ++|.++++||.++|+++|++++..... +.+|+++ + +.|+|+|+|||||||...
T Consensus 2 ~~~~~~~~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~~~-~~~~~~~---~---~~~~i~l~~H~D~vp~~~- 71 (347)
T PRK08652 2 ERAKELLKQLVKIPSPS--GQEDEIALHIMEFLESLGYDVHIESDG-EVINIVV---N---SKAELFVEVHYDTVPVRA- 71 (347)
T ss_pred hhHHHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCEEEEEecC-ceeEEEc---C---CCCEEEEEccccccCCCC-
Confidence 57899999999999996 788999999999999999998765432 3567776 2 237899999999999752
Q ss_pred CCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCce
Q 013368 108 KWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (444)
Q Consensus 108 ~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~ 187 (444)
+| .++ ||++||||++|||++++++|.|++.|.+.. .+++|.|+|++|||.|+ .|++.++++. . .|+
T Consensus 72 ----~~---~~~-~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~--~~~~v~~~~~~dEE~g~-~G~~~~~~~~--~-~d~ 137 (347)
T PRK08652 72 ----EF---FVD-GVYVYGTGACDAKGGVAAILLALEELGKEF--EDLNVGIAFVSDEEEGG-RGSALFAERY--R-PKM 137 (347)
T ss_pred ----CC---EEE-CCEEEeccchhhhHHHHHHHHHHHHHhhcc--cCCCEEEEEecCcccCC-hhHHHHHHhc--C-CCE
Confidence 23 365 999999999999999999999999998643 46799999999999986 6999998753 2 377
Q ss_pred EEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCce
Q 013368 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (444)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~ 266 (444)
+++.+ |+. ..+.++++|..+++|+++|+++|++.|+.+ ||+..++++++.|..+.... ... ..+
T Consensus 138 ~i~~e-----p~~-~~i~~~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~----~~~-----~~~ 202 (347)
T PRK08652 138 AIVLE-----PTD-LKVAIAHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKAL----GKY-----FDP 202 (347)
T ss_pred EEEec-----CCC-CceeeecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhh----hcc-----cCC
Confidence 88875 543 468899999999999999999999999988 99999999999998754321 000 113
Q ss_pred eeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCcccc
Q 013368 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTAT 346 (444)
Q Consensus 267 t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 346 (444)
+++++.+++|. ..|++|++|++.+|+|+++.++.+++.++|++.++. .++++++.. .. |+. ..
T Consensus 203 ~~~~~~i~gg~------~~nviP~~~~~~~diR~~~~~~~~~v~~~i~~~~~~--~~v~~~~~~-------~~-~~~-~~ 265 (347)
T PRK08652 203 HIGIQEIIGGS------PEYSIPALCRLRLDARIPPEVEVEDVLDEIDPILDE--YTVKYEYTE-------IW-DGF-EL 265 (347)
T ss_pred CCcceeeecCC------CCCccCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHh--cCceEEEec-------cC-Ccc-cC
Confidence 46677788886 889999999999999999999999999999988852 345555442 22 333 35
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 013368 347 DSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426 (444)
Q Consensus 347 ~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~ 426 (444)
+.++++++.+.+++++.+.++ .+...+|+||+++|+..|+|++.|||+... .+|++||+++++++.+++++|.+++.
T Consensus 266 ~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tDa~~~~~~gip~v~~Gpg~~~--~~H~~nE~i~i~~l~~~~~~l~~~~~ 342 (347)
T PRK08652 266 DEDEEIVQLLEKAMKEVGLEP-EFTVMRSWTDAINFRYNGTKTVVWGPGELD--LCHTKFERIDVREVEKAKEFLKALNE 342 (347)
T ss_pred CCCCHHHHHHHHHHHHhCCCC-CcCcCCccchhHHHHHCCCCEEEECCCchh--hcCCCCceeeHHHHHHHHHHHHHHHH
Confidence 678999999999999984433 556677899999999999999999998654 69999999999999999999999998
Q ss_pred HHH
Q 013368 427 AYA 429 (444)
Q Consensus 427 ~l~ 429 (444)
.+.
T Consensus 343 ~~~ 345 (347)
T PRK08652 343 ILL 345 (347)
T ss_pred HHh
Confidence 875
|
|
| >PRK04443 acetyl-lysine deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=396.86 Aligned_cols=342 Identities=19% Similarity=0.220 Sum_probs=275.2
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
.+++++++++|++|||++ ++|.++++|+.++|+++|++++... ..|+++.+ |. +.|+|+|+||+||||..
T Consensus 5 ~~~~~~~l~~Lv~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~----~~n~i~~~-~~--~~~~l~~~~H~DtVp~~- 74 (348)
T PRK04443 5 ALEARELLKGLVEIPSPS--GEEAAAAEFLVEFMESHGREAWVDE----AGNARGPA-GD--GPPLVLLLGHIDTVPGD- 74 (348)
T ss_pred hHHHHHHHHHHHcCCCCC--CChHHHHHHHHHHHHHcCCEEEEcC----CCcEEEEc-CC--CCCEEEEEeeccccCCC-
Confidence 377999999999999986 6888999999999999999886432 35899987 43 24899999999999953
Q ss_pred CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCc
Q 013368 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (444)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d 186 (444)
.|| +++ +|++||||++|||++++++|.|++.| +.+++++|.|+++++||.|+ .|...++.++ . ..|
T Consensus 75 -----~p~--~~~-~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~-~~~~~~l~~~-~-~~d 140 (348)
T PRK04443 75 -----IPV--RVE-DGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPS-SGGARLVADR-E-RPD 140 (348)
T ss_pred -----CCc--Eee-CCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCC-hhHHHHHHhc-c-CCC
Confidence 365 466 99999999999999999999999998 34678999999999999987 4555555543 3 358
Q ss_pred eEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCc
Q 013368 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (444)
Q Consensus 187 ~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~ 265 (444)
++++.+ |++...++++++|..+++|+++|+++|||.| + ||+..++++++.|..+... ..........
T Consensus 141 ~~iv~E-----pt~~~~i~~~~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~-----~~~~~~~~~~ 208 (348)
T PRK04443 141 AVIIGE-----PSGWDGITLGYKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEA-----NDGRERVFDQ 208 (348)
T ss_pred EEEEeC-----CCCccceeeecccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhc-----Cccccccccc
Confidence 888774 6553468899999999999999999999976 6 9999999999999875320 0000011123
Q ss_pred eeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccc
Q 013368 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTA 345 (444)
Q Consensus 266 ~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 345 (444)
++++++.++ . ..|+||++|++.+|+|+.|.++.++++++|++.+. .+++++. ...|++ .
T Consensus 209 ~~~~i~~i~--~------~~n~iP~~~~~~~d~R~~p~~~~~~i~~~i~~~~~----~~~~~~~--------~~~~~~-~ 267 (348)
T PRK04443 209 VTPKLVDFD--S------SSDGLTVEAEMTVGLRLPPGLSPEEAREILDALLP----TGTVTFT--------GAVPAY-M 267 (348)
T ss_pred cceeeeEEe--c------CCCCCCceEEEEEEEccCCCCCHHHHHHHHHHhCC----CcEEEEe--------cCCCce-e
Confidence 567787777 2 56899999999999999999999999999988873 2344443 223433 3
Q ss_pred cCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHH
Q 013368 346 TDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESI 424 (444)
Q Consensus 346 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~-~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~ 424 (444)
++.++++++.+.+++++.++.+ .....+|++|++++.+ .|+|++.|||+... .+|++||+++++++.+++++|+.+
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~tD~~~~~~~~gip~v~~Gpg~~~--~~H~~dE~i~i~~l~~~~~~~~~~ 344 (348)
T PRK04443 268 VSKRTPLARAFRVAIREAGGTP-RLKRKTGTSDMNVVAPAWGCPMVAYGPGDSD--LDHTPDEHLPLAEYLRAIAVLTDV 344 (348)
T ss_pred cCCCCHHHHHHHHHHHHhcCCc-ceeccccCCcHHHHhhhcCCCEEEECCCCcc--ccCCCcccccHHHHHHHHHHHHHH
Confidence 5678999999999999987754 4445679999999986 59999999998653 689999999999999999999999
Q ss_pred HHHH
Q 013368 425 IKAY 428 (444)
Q Consensus 425 l~~l 428 (444)
+.+|
T Consensus 345 ~~~l 348 (348)
T PRK04443 345 LERL 348 (348)
T ss_pred HhhC
Confidence 8764
|
|
| >COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=402.29 Aligned_cols=381 Identities=24% Similarity=0.408 Sum_probs=299.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCC--CCeEEEEecCCCCCCCcEEEEeeccccc
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKN--KPLILLKWPGSNPQLPSILLNSHTDVVP 103 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~--~~nl~~~~~g~~~~~~~i~l~~H~Dtvp 103 (444)
..++.++++++|+++||+| ..++.+++++++++|+++|+.++.+..... .+|+++.+.+..++ |+|+|+||+||||
T Consensus 11 ~~~~~~~~l~~lv~~~s~s-~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~l~l~~H~DvVP 88 (409)
T COG0624 11 LLDDILELLKELVRIPSVS-AGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGG-PTLLLGGHLDVVP 88 (409)
T ss_pred hhHHHHHHHHHHhcCCCCC-cccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCC-CeEEEeccccccC
Confidence 4577889999999999997 468889999999999999999887665322 56999999765433 8999999999999
Q ss_pred CCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc-
Q 013368 104 SEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV- 181 (444)
Q Consensus 104 ~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~- 181 (444)
.++ +.|+++||+++++ +|+|||||++||||++++++.|++.+.+.+..++++|.+++++|||+++ .|+..++.++.
T Consensus 89 ~g~~~~W~~~Pf~~~~~-dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~-~~~~~~~~~~~~ 166 (409)
T COG0624 89 AGGGEDWTTDPFEPTIK-DGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGG-AGGKAYLEEGEE 166 (409)
T ss_pred CCCcccCccCCCccEEE-CCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCC-cchHHHHHhcch
Confidence 998 8999999999998 8999999999999999999999999999877889999999999999998 67877777653
Q ss_pred --cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCC--CCCC-CHHHHHHHHHHH----HHhchhhhh
Q 013368 182 --FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK--LYDN-SAMENLFKSIES----VRRFRASQF 252 (444)
Q Consensus 182 --~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~--p~~g-nai~~~~~~i~~----l~~l~~~~~ 252 (444)
....|++++.+.... ......++.+++|..+++|+++|+++|+|. |+.+ |++..++..+.. +.++....+
T Consensus 167 ~~~~~~d~~i~~E~~~~-~~~~~~~~~~~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~~~ 245 (409)
T COG0624 167 ALGIRPDYEIVGEPTLE-SEGGDIIVVGHKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGEGF 245 (409)
T ss_pred hhccCCCEEEeCCCCCc-ccCCCeEEEcceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccccc
Confidence 133588888765211 123356777999999999999999999998 7777 955444444444 433222110
Q ss_pred HHHHhchhccCCceeeeeeeeccCCC--CCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCC--CceEEE
Q 013368 253 DLVKAGLKAEGEVVSVNMAFLKAGTP--SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASR--NMTFEF 328 (444)
Q Consensus 253 ~~~~~~~~~~~~~~t~~~~~i~~G~~--~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~ 328 (444)
. ...+++++.+.++.. ..++...|+||++|++.+|+|+.|.++.+++.+++++.++.... .++.++
T Consensus 246 ---------~-~~~~~~~~~~~~~~~~~~~~~~~~nviP~~~~~~~d~R~~p~~~~~~~~~~v~~~i~~~~~~~~~~~~~ 315 (409)
T COG0624 246 ---------D-GPLGLNVGLILAGPGASVNGGDKVNVIPGEAEATVDIRLLPGEDLDDVLEELEAELRAIAPKEGVEYEI 315 (409)
T ss_pred ---------c-CCccccccccccCCcccccCCccCceecceEEEEEEEecCCcCCHHHHHHHHHHHHHHhccccCceEEe
Confidence 0 035667776666653 23444679999999999999999999999988888888864332 455555
Q ss_pred eecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCcc
Q 013368 329 KQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF 408 (444)
Q Consensus 329 ~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~ 408 (444)
.. ....++. .++.++++++.+.+++++..+........++++|+.+++..++|++.|||+..+ .+|++||+
T Consensus 316 ~~------~~~~~~~-~~~~~~~~v~~l~~~~~~~~g~~~~~~~~G~~~da~~~~~~~~~~~~fgp~~~~--~~H~~~E~ 386 (409)
T COG0624 316 EP------GLGEPPL-PVPGDSPLVAALAEAAEELLGLPPEVSTGGGTHDARFFARLGIPAVIFGPGDIG--LAHQPNEY 386 (409)
T ss_pred cc------ccCCccc-cCCCchHHHHHHHHHHHHhhCCCceecCCCCcchHHHHHhcCCeeEEECCCCcc--cccCCCce
Confidence 42 1123332 367789999999999999765432333444568999999999999999999864 79999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHc
Q 013368 409 LNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 409 i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
++++++.+++++|+.++..++.
T Consensus 387 v~i~~l~~~~~~~~~~l~~l~~ 408 (409)
T COG0624 387 VELEDLVKGAKVLARLLYELAE 408 (409)
T ss_pred eeHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
|
|
| >TIGR01886 dipeptidase dipeptidase PepV | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=408.55 Aligned_cols=369 Identities=20% Similarity=0.297 Sum_probs=282.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCC----------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPN----------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~----------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i 93 (444)
+++.++++++|++|++|||+++. .++.++++++.++|+++||+++.++. .++.+.+. ++.++|
T Consensus 9 ~~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~------~~~~~~~~-~~~~~l 81 (466)
T TIGR01886 9 EARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFDN------YAGHVEYG-AGDERL 81 (466)
T ss_pred HHhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEecC------CceeEEec-CCCCEE
Confidence 45678899999999999999742 34677888999999999999886542 33332221 234799
Q ss_pred EEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccH
Q 013368 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (444)
Q Consensus 94 ~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (444)
+|+||+||||++ +.|+++||++.++ ||+|||||++||||+++++|.|+++|++.+.+++++|.|++.++||+|+ .|+
T Consensus 82 ~~~gH~DvVp~~-~~W~~~Pf~~~~~-dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~ 158 (466)
T TIGR01886 82 GIIGHMDVVPAG-EGWTRDPFEPEID-EGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGW-VDM 158 (466)
T ss_pred EEEeecccCCCC-CCCcCCCCCeEEE-CCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCc-ccH
Confidence 999999999997 5699999999998 9999999999999999999999999999988899999999999999986 799
Q ss_pred HHHHhccccccCceEEEeccCCC----CcCCcce---------------------------------ee-----------
Q 013368 174 EKFADSHVFNSLNVGIVLDEGLA----STTEDYR---------------------------------AF----------- 205 (444)
Q Consensus 174 ~~~~~~~~~~~~d~~~~~~~g~~----~p~~~~~---------------------------------i~----------- 205 (444)
+++++++.. .|++++.|.+.. +++. .. ++
T Consensus 159 ~~~~~~~~~--~d~~~~~d~~~~~~~ge~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~~ 235 (466)
T TIGR01886 159 DYYFKHEET--PDFGFSPDAEFPIINGEKGN-FTLELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKAA 235 (466)
T ss_pred HHHHhcCcC--CCEEEECCCCceeEEEecce-EEEEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHHH
Confidence 999986542 365544432110 1111 01 11
Q ss_pred ----ecccccE---------EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhc--hhhhhHHHHh---------c--
Q 013368 206 ----YAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRF--RASQFDLVKA---------G-- 258 (444)
Q Consensus 206 ----~~~~G~~---------~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l--~~~~~~~~~~---------~-- 258 (444)
.+++|.. +++|+++|+++|||.|+.| |||..+++++..+..- ....++.+.. .
T Consensus 236 ~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 315 (466)
T TIGR01886 236 YESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKLG 315 (466)
T ss_pred HHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccCC
Confidence 2345544 7889999999999999999 9999999988773100 0000010100 0
Q ss_pred ---hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeeccccc
Q 013368 259 ---LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLH 335 (444)
Q Consensus 259 ---~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
.......+|+|++.|++|. . | ++|++.+|+|++|.++.+++.++|++.+.. .+++++..
T Consensus 316 ~~~~~~~~g~~S~nvgvI~gG~------~-~---~~~~l~iD~R~~Pge~~eev~~eI~~~i~~---~~~v~~~~----- 377 (466)
T TIGR01886 316 IAFHDELMGDLAMNAGMFDFDH------A-N---KESKLLLNFRYPQGTSPETMQKQVLDKFGG---IVDVTYNG----- 377 (466)
T ss_pred CcccccCcCceEEEeEEEEEec------C-C---ceEEEEEEEecCCCCCHHHHHHHHHHHHhc---ccEEEEec-----
Confidence 0011235789999999985 3 3 799999999999999999999999888863 23444321
Q ss_pred ccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHH
Q 013368 336 DKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYL 415 (444)
Q Consensus 336 ~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~ 415 (444)
....|.+ .+.++++++.+.++++++.+..+.+...+|+||+++|. .++|...|||++.. ++|++||+++++++.
T Consensus 378 -~~~~P~~--~~~ds~lv~~l~~a~~~v~G~~~~~~~~~ggTDa~~~~-~~i~~gv~gPG~~~--~aH~~dE~V~i~el~ 451 (466)
T TIGR01886 378 -HFEEPHY--VPGSDPLVQTLLKVYEKHTGKKGHEVIIGGGTYGRLLE-RGVAYGAMFEGGPD--VMHQANEFMMLDDLI 451 (466)
T ss_pred -ccCCCcc--cCCCCHHHHHHHHHHHHHhCCCCceeeecCccHHHhcc-cccccccccCCCCC--CccCCCcceEHHHHH
Confidence 1234544 56678999999999999877554555678999999998 47888889999764 799999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013368 416 KGIDIYESIIKAYA 429 (444)
Q Consensus 416 ~~~~~~~~~l~~l~ 429 (444)
+++++|..++..++
T Consensus 452 ~a~~iy~~~i~~l~ 465 (466)
T TIGR01886 452 LAAAIYAEAIYELA 465 (466)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
|
This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus. |
| >TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=394.60 Aligned_cols=342 Identities=19% Similarity=0.214 Sum_probs=264.4
Q ss_pred HHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC---CC
Q 013368 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP---SK 108 (444)
Q Consensus 33 ~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~---~~ 108 (444)
+|++|++|||+| ++|.+++++|.++|+++|+. .+... . ..||++.+.+ ++ .++|+|+|||||||.++ ..
T Consensus 1 ll~~Lv~ipS~s--~~e~~~~~~i~~~l~~~g~~~~~~~~-~--~~nvva~~~~-~~-~~~l~l~gH~DtVp~~~~~~~~ 73 (373)
T TIGR01900 1 LLQQIMDIFSPS--DHEGPIADEIEAALNNLELEGLEVFR-F--GDNVLARTDF-GK-ASRVILAGHIDTVPIADNFPPK 73 (373)
T ss_pred ChHHHhCCCCCC--chHHHHHHHHHHHHhhccccCceEEE-E--CCEEEEecCC-CC-CCeEEEeCccccccCCCCChhh
Confidence 478999999996 78899999999999999754 22222 1 2499998743 22 47899999999999863 46
Q ss_pred CccCCC--------cceecCCCeEEecCcccchhHHHHHHHHHHHHHH--cCCCCcceEEEEeecCcccCc-cccHHHHH
Q 013368 109 WSHHPF--------GAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA--SGFQPVRSVYLSFVPDEEIGG-HDGAEKFA 177 (444)
Q Consensus 109 W~~~Pf--------~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~--~~~~~~~~i~~~~~~~EE~g~-~~G~~~~~ 177 (444)
|+++|| .+.++ ||++||||++|||++++++|.|++.|.+ .+..++++|.|+++++||.++ ..|+..++
T Consensus 74 W~~~p~~~~~~~~~~~~~~-~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~ 152 (373)
T TIGR01900 74 WLEPGDSLIREEIAHAHPE-DGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIR 152 (373)
T ss_pred hccCccccccccccccccc-CCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHH
Confidence 998775 46786 9999999999999999999999999964 344678999999999999863 25999998
Q ss_pred hccc-cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHH
Q 013368 178 DSHV-FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (444)
Q Consensus 178 ~~~~-~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~ 255 (444)
+... +...|++++.+ |+. ..++++++|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+......
T Consensus 153 ~~~~~~~~~d~~iv~E-----pt~-~~i~~g~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~-- 224 (373)
T TIGR01900 153 DAHPDWLAADFAIIGE-----PTG-GGIEAGCNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVN-- 224 (373)
T ss_pred HhCcccccCCEEEEEC-----CCC-CcccccceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhccccc--
Confidence 8642 22457777763 654 578999999999999999999999999999 9999999999999876431110
Q ss_pred HhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc-----------CC--C
Q 013368 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-----------AS--R 322 (444)
Q Consensus 256 ~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-----------~~--~ 322 (444)
........+++++.++||. ..|+||++|++++|+|+.|.++.+++.+.|+++++. .. .
T Consensus 225 ---~~~~~~~~t~~v~~I~GG~------~~nvVP~~a~~~~diR~~p~~~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 295 (373)
T TIGR01900 225 ---IDGLDYREGLNATFCEGGK------ANNVIPDEARMHLNFRFAPDKDLAEAKALMMGADAGAELGNGEHVAEGGEFD 295 (373)
T ss_pred ---ccCCcccceEEEEEEeCCC------CCcccCCeEEEEEEEecCCCcCHHHHHHHHHhhhhhhhhhHHHHHHhhcccc
Confidence 0011123689999999987 899999999999999999999999999998644221 00 1
Q ss_pred C-ceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCC
Q 013368 323 N-MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPIL 401 (444)
Q Consensus 323 ~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~ 401 (444)
+ .+++++. ....|.. .++.++++++.+.++++++.+..+. ...|+||++++...|+|++.|||++.. +
T Consensus 296 ~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~g~tD~~~~~~~gip~v~~Gpg~~~--~ 364 (373)
T TIGR01900 296 GQDGIEIAM------EDEAGGA-LPGLGAPLAQDLIDAVGEEKGRDPL--AKFGWTDVARFSALGIPALNFGAGDPL--F 364 (373)
T ss_pred ccccceEEE------cccCCCC-CCCCCCHHHHHHHHHHHhccCCCcc--cccCCccHHHHHhcCCCEEEeCCCChh--h
Confidence 1 1233332 0122222 2455789999999999998665423 367889999999889999999999764 7
Q ss_pred CCCCCcccc
Q 013368 402 LHDHNEFLN 410 (444)
Q Consensus 402 ~H~~~E~i~ 410 (444)
+|++|||++
T Consensus 365 aH~~dE~v~ 373 (373)
T TIGR01900 365 AHKHDEQCP 373 (373)
T ss_pred ccCCCCCCC
Confidence 999999985
|
This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546. |
| >PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=388.03 Aligned_cols=342 Identities=18% Similarity=0.232 Sum_probs=274.7
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC-CCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
.+++++++++|++|||+| ++|.++++||+++|+++ |+++... ..|+++++.+ +. .++|+|+||+||||+.
T Consensus 6 ~~~~~~~l~~li~ips~s--~~e~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~-~~-~~~i~l~~H~Dtvp~~ 76 (352)
T PRK13007 6 AADLAELTAALVDIPSVS--GDEKALADAVEAALRALPHLEVIRH-----GNSVVARTDL-GR-PSRVVLAGHLDTVPVA 76 (352)
T ss_pred HHHHHHHHHHHhcCCCCC--chHHHHHHHHHHHHHhCcCceEEec-----CCeEEEEccC-CC-CCeEEEEccccccCCC
Confidence 478999999999999996 78899999999999996 8876532 3489999842 22 2579999999999986
Q ss_pred CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcc-ccHHHHHhcc-ccc
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSH-VFN 183 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~-~~~ 183 (444)
+ ||++.++ ||++||||++|||+++|++|.|++.|. +++++|.|+|+++||.++. .|+..+++.. .+.
T Consensus 77 ~------~~~~~~~-~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~ 145 (352)
T PRK13007 77 D------NLPSRRE-GDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWL 145 (352)
T ss_pred C------CCCccee-CCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhccccc
Confidence 3 5666787 999999999999999999999999983 3678999999999998642 4888888753 233
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
..|++++.+ |+. ..++++++|..+++|+++|+++|||.|+.+ ||+..+++++..|..+...... ....
T Consensus 146 ~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~-----~~~~ 214 (352)
T PRK13007 146 AGDFAILLE-----PTD-GVIEAGCQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVV-----VDGL 214 (352)
T ss_pred CCCEEEEec-----CCC-CceEeeccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccc-----cCCC
Confidence 468888875 543 568899999999999999999999999988 9999999999999876432100 0001
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
....+++++.++||. ..|+||++|++.+|+|++|.++.+++.++|++.+.... ++++.. ...|.
T Consensus 215 ~~~~~~~~~~i~gG~------~~nviP~~a~~~~diR~~p~~~~~~v~~~i~~~~~~~~---~~~~~~-------~~~~~ 278 (352)
T PRK13007 215 TYREGLNAVRISGGV------AGNVIPDECVVNVNYRFAPDRSLEEALAHVREVFDGFA---EVEVTD-------LAPGA 278 (352)
T ss_pred CccceeEeEeEecCC------cCccCCCeEEEEEEEeeCCCCCHHHHHHHHHHHhcccc---EEEeec-------ccCCC
Confidence 113578999999886 89999999999999999999999999999998886322 444432 22232
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
....++++++.+.+++ +... ....|+||+++++..|+|++.|||+... .+|++||+++++++.+++++|.
T Consensus 279 --~~~~~~~~~~~~~~~~---g~~~---~~~~g~td~~~~~~~Gip~v~~Gpg~~~--~~H~~~E~v~i~~l~~~~~~~~ 348 (352)
T PRK13007 279 --RPGLDHPAAAALVAAV---GGEV---RAKYGWTDVARFSALGIPAVNFGPGDPA--LAHQRDEHVPVAQITACARILR 348 (352)
T ss_pred --CCCCCCHHHHHHHHHh---CCCC---ccccccchHHHHHhCCCCEEEeCCCchh--hccCCCCceEHHHHHHHHHHHH
Confidence 2456889988888863 3222 2346889999999999999999998654 7999999999999999999999
Q ss_pred HHH
Q 013368 423 SII 425 (444)
Q Consensus 423 ~~l 425 (444)
.++
T Consensus 349 ~~~ 351 (352)
T PRK13007 349 RWL 351 (352)
T ss_pred HHh
Confidence 886
|
|
| >TIGR01883 PepT-like peptidase T-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=387.32 Aligned_cols=349 Identities=20% Similarity=0.233 Sum_probs=283.7
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC---CCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~---~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
++++++++|++|||++ ++|.++++||.++|+++|++++.++... +++|+++.++|.++ .|+|+|.||+||||.+
T Consensus 1 ~~~~~~~~l~~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~i~l~~H~D~V~~~ 77 (361)
T TIGR01883 1 RLKKYFLELIQIDSES--GKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVK-FDTIFFCGHMDTVPPG 77 (361)
T ss_pred ChHHHHHHHeecCCCC--CcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCC-CCcEEEEeeccccCCC
Confidence 4678999999999996 6899999999999999999987654321 36799999976543 4899999999999985
Q ss_pred CCCCccCCCcceecCCCeEEecCc----ccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (444)
+ ||.+.++ +|++||||+ +|||++++++|.+++.|.+.+ .++++|.|+|+++||.|+ .|++.+.+..
T Consensus 78 ~------~~~~~~~-~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~-~G~~~~~~~~- 147 (361)
T TIGR01883 78 A------GPEPVVE-DGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGL-IGMRLFDESK- 147 (361)
T ss_pred C------CCCceec-CCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCc-hhHhHhChhh-
Confidence 2 3455676 999999999 999999999999999998876 467899999999999885 7999887643
Q ss_pred cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhch
Q 013368 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (444)
Q Consensus 182 ~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~ 259 (444)
+. .+++++++.+ .....++.+++|..+++|+++|+++|+| .|+.| ||+..+++++.+|.....
T Consensus 148 ~~-~~~~~~~~~~----~~~~~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~~---------- 212 (361)
T TIGR01883 148 IT-AAYGYCLDAP----GEVGNIQLAAPTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGRI---------- 212 (361)
T ss_pred cC-cceeEEEeCC----CCcceEEecCCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccCC----------
Confidence 22 4677887642 1124688899999999999999999986 59998 999999999988864211
Q ss_pred hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeeccccccc
Q 013368 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDK 337 (444)
Q Consensus 260 ~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 337 (444)
...++++++.+++|. ..|+||++|++.+|+|+.+..+.+.+.++|++.++.. ..+.++++...
T Consensus 213 ---~~~~~~~i~~i~gG~------~~nvVP~~~~~~~diR~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~------ 277 (361)
T TIGR01883 213 ---DEETTANIGSFSGGV------NTNIVQDEQLIVAEARSLSFRKAEAQVQTMRERFEQAAEKYGATLEEETR------ 277 (361)
T ss_pred ---CCccccccceeecCC------ccCccCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEE------
Confidence 123578899999987 8999999999999999999998888888888877632 23455555421
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHH
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKG 417 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~ 417 (444)
...|++ .++.++++++++.+++++.+.++ .....+|+||++++...|+|++.|||+.. .+|++||+++++++.++
T Consensus 278 ~~~~~~-~~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tD~~~~~~~giP~v~~G~g~~---~~Hs~~E~v~i~~~~~~ 352 (361)
T TIGR01883 278 LIYEGF-KIHPQHPLMNIFKKAAKKIGLKT-SEIFSGGGSDANVLNEKGVPTVNLSAGYV---HAHTEKETISIEQLVKL 352 (361)
T ss_pred eccccc-cCCCCCHHHHHHHHHHHHcCCCc-EEEecCcccHHHHHhhCCCceEEECCCcc---cCcCcceeEEHHHHHHH
Confidence 223333 35678899999999999865543 44456789999999999999999999974 69999999999999999
Q ss_pred HHHHHHHH
Q 013368 418 IDIYESII 425 (444)
Q Consensus 418 ~~~~~~~l 425 (444)
+++|.+++
T Consensus 353 ~~~~~~~~ 360 (361)
T TIGR01883 353 AELVIALA 360 (361)
T ss_pred HHHHHHHh
Confidence 99999986
|
This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene. |
| >TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=380.66 Aligned_cols=333 Identities=23% Similarity=0.286 Sum_probs=268.7
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCcc
Q 013368 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (444)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~ 111 (444)
+++++|++|||+| ++|.++++||+++|+++|+++. .+ ...|+++.. +. +.|+|+|+||+||||.
T Consensus 1 ~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~-~~---~~~~~~~~~-~~--~~~~i~~~~H~D~vp~------- 64 (336)
T TIGR01902 1 ELLKDLLEIYSPS--GKEANAAKFLEEISKDLGLKLI-ID---DAGNFILGK-GD--GHKKILLAGHVDTVPG------- 64 (336)
T ss_pred ChHHHHhcCCCCC--cchHHHHHHHHHHHHHcCCEEE-EC---CCCcEEEEe-CC--CCceEEEEccccccCC-------
Confidence 3689999999986 7889999999999999999884 22 345888865 33 3589999999999985
Q ss_pred CCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEe
Q 013368 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191 (444)
Q Consensus 112 ~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~ 191 (444)
+|...++ ||++||||++|||++++++|.|++.|.+. +.+|.|+++++||.|+ .|++++++... .+++++.
T Consensus 65 -~~~~~~~-~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~-~G~~~~~~~~~---~~~~ii~ 134 (336)
T TIGR01902 65 -YIPVKIE-GGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSS-KGAREVIDKNY---PFYVIVG 134 (336)
T ss_pred -CcccEEe-CCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCC-ccHHHHHhhcC---CCEEEEe
Confidence 2456676 99999999999999999999999999754 4689999999999986 79999998643 2456665
Q ss_pred ccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHH-hchhhhhHHHHhchhccCCceeeee
Q 013368 192 DEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVR-RFRASQFDLVKAGLKAEGEVVSVNM 270 (444)
Q Consensus 192 ~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~-~l~~~~~~~~~~~~~~~~~~~t~~~ 270 (444)
+ |++...++.+++|..+++++++|+++|+|.|. ||+..++.+++.|. .+... .. -..+++++
T Consensus 135 e-----pt~~~~i~~~~kG~~~~~v~~~G~~~Hss~~~--~ai~~~~~~~~~l~~~~~~~--------~~--~~~~~~~~ 197 (336)
T TIGR01902 135 E-----PSGAEGITLGYKGSLQLKIMCEGTPFHSSSAG--NAAELLIDYSKKIIEVYKQP--------EN--YDKPSIVP 197 (336)
T ss_pred c-----CCCCcceeeeeeeEEEEEEEEEecCcccCCCh--hHHHHHHHHHHHHHHHhccc--------cC--CCCCccee
Confidence 4 66544688999999999999999999999765 69999999998886 23210 00 01246788
Q ss_pred eeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCC
Q 013368 271 AFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSN 350 (444)
Q Consensus 271 ~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 350 (444)
+.+++|. ..|+||++|++++|+|+.|.++.+++.++|++. ..+++++.. ...|. .++.++
T Consensus 198 ~~i~gg~------~~nvIP~~a~~~idiR~~p~~~~~~~~~~i~~~-----~~~~~~~~~-------~~~p~--~~~~~~ 257 (336)
T TIGR01902 198 TIIRFGE------SYNDTPAKLELHFDLRYPPNNKPEEAIKEITDK-----FPICLEIVD-------ETPPY--KVSRNN 257 (336)
T ss_pred EEEEccC------CCcCCCceEEEEEEEeeCCCCCHHHHHHHHHhc-----cCceEEEEe-------ccCce--ecCCCC
Confidence 8888887 899999999999999999999999998888751 223443331 23343 256789
Q ss_pred hHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhc-CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 351 PWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER-GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 351 ~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~-gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
++++++.+++++.+..+ .+...+|++|++++.+. |+|++.|||+... .+|++||+++++++.+++++|..++..++
T Consensus 258 ~lv~~~~~a~~~~~~~~-~~~~~~g~tD~~~~~~~~g~p~v~~Gpg~~~--~aH~~nE~v~i~~l~~~~~~~~~~l~~l~ 334 (336)
T TIGR01902 258 PLVRAFVRAIRKQGMKP-RLKKKTGTSDMNILAPIWTVPMVAYGPGDST--LDHTPQEKISLAEYLIGIKTLMLAIEELW 334 (336)
T ss_pred HHHHHHHHHHHHcCCCe-EEeeccccCccceeccccCCCeEEECCCCcc--cCCCCcceeEHHHHHHHHHHHHHHHHHHh
Confidence 99999999999987543 44456788999999886 9999999999764 68999999999999999999999999885
Q ss_pred c
Q 013368 430 S 430 (444)
Q Consensus 430 ~ 430 (444)
.
T Consensus 335 ~ 335 (336)
T TIGR01902 335 Q 335 (336)
T ss_pred c
Confidence 4
|
This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade. |
| >PRK13381 peptidase T; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=392.54 Aligned_cols=360 Identities=19% Similarity=0.232 Sum_probs=278.7
Q ss_pred HHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 29 SIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
..++.+.+|++|||+|.. .++.++++||.++|+++|++...++ +++||+++++|++++.|+|+|+||+|
T Consensus 2 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~---~~~nvi~~~~g~~~~~~~lll~~H~D 78 (404)
T PRK13381 2 QLTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVID---EHAIVTAKLPGNTPGAPRIGFIAHLD 78 (404)
T ss_pred cHHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEc---CCeEEEEEEecCCCCCCeEEEEEEec
Confidence 367889999999999842 3678999999999999999655443 67899999987655458999999999
Q ss_pred cccCCCC--------CCccCCCccee------------------cCCCeEEecCc----ccchhHHHHHHHHHHHHHHcC
Q 013368 101 VVPSEPS--------KWSHHPFGAHL------------------DSQGNIFARGS----QDMKCVGMQYLEAIRRLKASG 150 (444)
Q Consensus 101 tvp~~~~--------~W~~~Pf~~~~------------------~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~ 150 (444)
|||.++. .|+.+||.+.. + ++++||||+ +|||++++++|.|++.|.+.+
T Consensus 79 ~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~ 157 (404)
T PRK13381 79 TVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQG-EDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE 157 (404)
T ss_pred CCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccC-CcEEeCCCccccccccHHHHHHHHHHHHHHHhcC
Confidence 9998753 25555544332 3 667999999 999999999999999998875
Q ss_pred CCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCC-CC
Q 013368 151 FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LY 229 (444)
Q Consensus 151 ~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p~ 229 (444)
.+.++|.|+|+++||.|+ .|++.++.++ +. .|+++++|.+ +|+ .++.+++|..+++|+++|+++|++. |+
T Consensus 158 -~~~g~i~~~~~~dEE~g~-~G~~~~~~~~-~~-~d~~~~~~~~--~~~---~i~~~~~G~~~~~v~v~Gk~aHa~~~p~ 228 (404)
T PRK13381 158 -VEHGDIVVAFVPDEEIGL-RGAKALDLAR-FP-VDFAYTIDCC--ELG---EVVYENFNAASAEITITGVTAHPMSAKG 228 (404)
T ss_pred -CCCCCEEEEEEccccccc-ccHHHHHHhc-CC-CCEEEEecCC--Ccc---eEEEecCcceEEEEEEEeEecCCCCCcc
Confidence 467899999999999985 7999997653 33 5778888754 343 5678899999999999999999875 77
Q ss_pred CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHH
Q 013368 230 DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (444)
Q Consensus 230 ~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~ 308 (444)
.+ |||..+++++.+|..+.... .......+++++.+++ .|++|++.+|+|+.|.++.++
T Consensus 229 ~g~NAI~~a~~~i~~l~~~~~~~--------~~~~~~~~i~v~~i~g------------~p~~~~~~~diR~~~~~~~e~ 288 (404)
T PRK13381 229 VLVNPILMANDFISHFPRQETPE--------HTEGREGYIWVNDLQG------------NVNKAKLKLIIRDFDLDGFEA 288 (404)
T ss_pred cCcCHHHHHHHHHHhCCccCCCC--------CCCCcccEEEEEeEEe------------CcceEEEEEEEecCCHHHHHH
Confidence 77 99999999999997653211 0001112355554432 289999999999999999999
Q ss_pred HHHHHHHHhccC--CCC-ceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhc
Q 013368 309 LERRIVEEWAPA--SRN-MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER 385 (444)
Q Consensus 309 i~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~ 385 (444)
+.+.|+++++.. ... .+++++... ....|.. .+..++++++++.+++++.+.++ .....+|+||+++|...
T Consensus 289 i~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~lv~~l~~a~~~~g~~~-~~~~~~g~tDa~~~~~~ 362 (404)
T PRK13381 289 RKQFIEEVVAKINAKYPTARVSLTLTD----QYSNISN-SIKDDRRAVDLAFDAMKELGIEP-KVIPMRGGTDGAALSAK 362 (404)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEEe----CCchhhc-ccccCHHHHHHHHHHHHHcCCCe-eeccCCccchHHHHhcC
Confidence 999998887642 122 344443210 1111222 35678999999999998865443 33456789999999988
Q ss_pred CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 386 GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 386 gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
|+|++.|||+.. .+|++||+++++++.+++++|..++..+++
T Consensus 363 giP~v~~GpG~~---~aH~~dE~v~i~~l~~~~~v~~~~~~~~~~ 404 (404)
T PRK13381 363 GLPTPNLFTGAH---NFHSRFEFLPVSSFVKSYEVTITICLLAAK 404 (404)
T ss_pred CCCeEEECcccc---CCcCcceeEEHHHHHHHHHHHHHHHHHhcC
Confidence 999999999974 499999999999999999999999988753
|
|
| >PRK07318 dipeptidase PepV; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=397.60 Aligned_cols=371 Identities=20% Similarity=0.287 Sum_probs=275.3
Q ss_pred CCCChhHHHHHHHhhhcccCCCCC----------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCc
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPN----------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPS 92 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~----------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~ 92 (444)
.+++.++.+++|++|++|||+++. .++.++++||.++|+++|++++.++ |+++.+.... +.++
T Consensus 9 ~~~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~------n~~~~~~~~~-~~~~ 81 (466)
T PRK07318 9 VEKRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD------NYAGHIEYGE-GEEV 81 (466)
T ss_pred HHHhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec------CccceEEECC-CCCE
Confidence 345778899999999999999743 2467899999999999999988553 5565543211 3478
Q ss_pred EEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcccc
Q 013368 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (444)
Q Consensus 93 i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (444)
|+|+||+||||.+ +.|+++||.++++ ||++||||++||||++++++.|++.|++.+.+++++|.|+|++|||.|+ .|
T Consensus 82 l~l~gH~DvVp~~-~~W~~~Pf~~~~~-dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~-~G 158 (466)
T PRK07318 82 LGILGHLDVVPAG-DGWDTDPYEPVIK-DGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGW-KC 158 (466)
T ss_pred EEEEEecCCCCCC-CCCCCCCcceEEE-CCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCc-hh
Confidence 9999999999986 4799999999998 9999999999999999999999999999888888999999999999986 79
Q ss_pred HHHHHhccccccCceEEEeccCCC----C----------------------------cCCc-------------------
Q 013368 173 AEKFADSHVFNSLNVGIVLDEGLA----S----------------------------TTED------------------- 201 (444)
Q Consensus 173 ~~~~~~~~~~~~~d~~~~~~~g~~----~----------------------------p~~~------------------- 201 (444)
++++++.+... ++.++.|.... + +++.
T Consensus 159 ~~~l~~~~~~~--~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~ 236 (466)
T PRK07318 159 MDYYFEHEEAP--DFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIA 236 (466)
T ss_pred HHHHHHhCCCC--CEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHH
Confidence 99999864221 22222221000 0 1100
Q ss_pred ----ceeeecccccE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchh--hhhHHHHh-----------c
Q 013368 202 ----YRAFYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRA--SQFDLVKA-----------G 258 (444)
Q Consensus 202 ----~~i~~~~~G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~--~~~~~~~~-----------~ 258 (444)
..+..++||.. +++|+++|+++|++.|+.| |||..+++++..|..... ..++.+.. +
T Consensus 237 ~~~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (466)
T PRK07318 237 AFEAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLG 316 (466)
T ss_pred HHHHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCC
Confidence 00112567755 7999999999999999999 999999999998864210 01111110 0
Q ss_pred --h-hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeeccccc
Q 013368 259 --L-KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLH 335 (444)
Q Consensus 259 --~-~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 335 (444)
. ...-..+|+|++.+++|. .. +|++.+|+|+.+.++.+++.++|++.++. .++++++..
T Consensus 317 ~~~~~~~~g~~t~nvg~i~gg~------~~-----~~~~~iDiR~~p~~~~~~v~~~i~~~~~~--~~~~~~~~~----- 378 (466)
T PRK07318 317 IAYEDDVMGDLTMNVGVFSFDE------EK-----GGTLGLNFRYPVGTDFEKIKAKLEKLIGV--TGVELSEHE----- 378 (466)
T ss_pred CcccCCCccCeEEEeeEEEEec------Cc-----EEEEEEEEeCCCCCCHHHHHHHHHHHHHh--cCeEEEEcc-----
Confidence 0 000124688999888874 21 79999999999999999999999888753 234333321
Q ss_pred ccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHH
Q 013368 336 DKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYL 415 (444)
Q Consensus 336 ~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~ 415 (444)
...|.. .+.++++++.+.+++++..+..+.+...+|+||++++.. ++|...++|++.. ++|++||+++++++.
T Consensus 379 --~~~p~~--~~~d~~lv~~l~~a~~~~~g~~~~~~~~~ggtDa~~~~~-~i~~Gp~~pg~~~--~aH~~dE~v~i~~l~ 451 (466)
T PRK07318 379 --HQKPHY--VPKDDPLVKTLLKVYEKQTGLKGEEQVIGGGTYARLLKR-GVAFGAMFPGSED--TMHQANEYIEIDDLI 451 (466)
T ss_pred --CCCcee--eCCCCHHHHHHHHHHHHHhCCCCCeeEEcchHhHhhCCC-eEEeCCCCCCCCC--CCcCCCcceeHHHHH
Confidence 233433 467899999999999986554435566788999999974 5543333355433 599999999999999
Q ss_pred HHHHHHHHHHHHHHc
Q 013368 416 KGIDIYESIIKAYAS 430 (444)
Q Consensus 416 ~~~~~~~~~l~~l~~ 430 (444)
+++++|..++.++++
T Consensus 452 ~~~~v~~~~l~~~~~ 466 (466)
T PRK07318 452 KAAAIYAEAIYELAK 466 (466)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998863
|
|
| >PRK07205 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=391.86 Aligned_cols=368 Identities=19% Similarity=0.239 Sum_probs=264.5
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCC--------hhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPD--------YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILL 95 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~--------e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l 95 (444)
+++.++.+++|++|++|||+|+... ..+.++++.++|+++|++++.++. + .++++.+ |. +.++|+|
T Consensus 7 ~~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~-~~~~~~~-g~--~~~~lll 80 (444)
T PRK07205 7 EKVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPK--G-YYGYAEI-GQ--GEELLAI 80 (444)
T ss_pred HHhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCC--C-eEEEEEe-cC--CCcEEEE
Confidence 4577899999999999999974321 256788888999999998875531 3 3666665 43 3478999
Q ss_pred EeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 96 NSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 96 ~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
+||+||||+++ +.|+++||++.++ ||+|||||++||||+++++|.|++.|++.+.+++++|.|+|++|||+|+ .|++
T Consensus 81 ~gH~DvVp~~~~~~W~~~Pf~~~v~-dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~-~g~~ 158 (444)
T PRK07205 81 LCHLDVVPEGDLSDWQTPPFEAVEK-DGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLW-RCMN 158 (444)
T ss_pred EEeeccCCCCCcccCCCCCCceEEE-CCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-ccHH
Confidence 99999999975 7899999999998 9999999999999999999999999999888888999999999999987 6888
Q ss_pred HHHhcccccc----Cc--eEEEeccC-C------CCcCCcceee-------------------------eccccc----E
Q 013368 175 KFADSHVFNS----LN--VGIVLDEG-L------ASTTEDYRAF-------------------------YAERCP----W 212 (444)
Q Consensus 175 ~~~~~~~~~~----~d--~~~~~~~g-~------~~p~~~~~i~-------------------------~~~~G~----~ 212 (444)
.+++...... .| +.+++.+. . .+|+....+. ...+|. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~ 238 (444)
T PRK07205 159 RYNEVEEQATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVK 238 (444)
T ss_pred HHHhCCCCCCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeec
Confidence 8887421100 01 11111110 0 0122100000 011232 2
Q ss_pred EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhch--------------hccCCceeeeeeeeccCC
Q 013368 213 WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL--------------KAEGEVVSVNMAFLKAGT 277 (444)
Q Consensus 213 ~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~--------------~~~~~~~t~~~~~i~~G~ 277 (444)
+.+|+++|+++|||.|+.| |||..+++++..|..+.. .+.+.... ......+|+|++
T Consensus 239 ~~~v~v~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~nvg------ 310 (444)
T PRK07205 239 ENEVTVLGKSVHAKDAPQGINAVIRLAKALVVLEPHPA--LDFLANVIGEDATGLNIFGDIEDEPSGKLSFNIA------ 310 (444)
T ss_pred CcEEEEEeEEcccCCCccCcCHHHHHHHHHHhccHHHH--HHHHHHhcCCCCccccCCccccCCCcCCceEEeE------
Confidence 3489999999999999988 999999999988864321 11010000 000012333432
Q ss_pred CCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHH
Q 013368 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLE 357 (444)
Q Consensus 278 ~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 357 (444)
..|+||++|++.+|+|+.|.++.+++.+.|+++++. .+++++... ...|. ..+.++++++.+.
T Consensus 311 ------~~nvvP~~a~~~ld~R~~p~~~~e~v~~~i~~~~~~--~~v~~~~~~-------~~~p~--~~~~~~~lv~~l~ 373 (444)
T PRK07205 311 ------GLTITKEKSEIRIDIRIPVLADKEKLVQQLSQKAQE--YGLTYEEFD-------YLAPL--YVPLDSELVSTLM 373 (444)
T ss_pred ------EEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHH--cCcEEEEec-------CCCce--eeCCCcHHHHHHH
Confidence 457999999999999999999999999999888753 234433221 22332 2567899999999
Q ss_pred HHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEc---cCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 358 EAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFS---PMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 358 ~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~g---p~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+++++..+....+..++|++|+..+ .|++.|| |+... .+|++||+++++++.+++++|..++.+++.
T Consensus 374 ~~~~~~~g~~~~~~~~gg~~~~~~~----~~~i~~G~~~Pg~~~--~aH~~nE~v~i~~l~~~~~~l~~~l~~l~~ 443 (444)
T PRK07205 374 SVYQEKTGDDSPAQSSGGATFARTM----PNCVAFGALFPGAPQ--TEHQANEHIVLEDLYRAMDIYAEAIYRLTT 443 (444)
T ss_pred HHHHHHhCCCCceEEeccHHHHHhC----CCcEEECCccCCCCC--CCcCcccCccHHHHHHHHHHHHHHHHHHhc
Confidence 9999876544244445566665433 5788999 76543 699999999999999999999999998753
|
|
| >PLN02280 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=385.69 Aligned_cols=368 Identities=14% Similarity=0.130 Sum_probs=286.2
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
..+.+.++.+.++.+|+.+ ++|.+++++|.++|+++|++++... +..|+++.+ |.++ .|+|+|+||||+||..
T Consensus 95 ~~~~l~~l~r~lh~~PEls--~~E~~t~~~i~~~L~~~G~~~~~~~---~~~~vva~~-g~~~-~~~I~l~gh~DaVP~~ 167 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELA--FEEYKTSELVRSELDRMGIMYRYPL---AKTGIRAWI-GTGG-PPFVAVRADMDALPIQ 167 (478)
T ss_pred HHHHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHHHCCCeEEecC---CCCEEEEEE-CCCC-CCEEEEEEecCCCccc
Confidence 3455666677777777764 7899999999999999999987532 467999998 5433 3899999999999997
Q ss_pred C-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 106 ~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
+ .+|+++| ++ +|++|||| +|+++|++|+|++.|.+.+.+++++|.|+|+++||.| .|++++++++.+++
T Consensus 168 e~~~w~~~p----~~-~G~~h~cG---hd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g--~Ga~~li~~g~~~~ 237 (478)
T PLN02280 168 EAVEWEHKS----KV-AGKMHACG---HDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG--NGAKRMIGDGALDD 237 (478)
T ss_pred CCCCCCCCC----CC-CCeEEeCC---CcHHHHHHHHHHHHHHhccccCCceEEEEeccccccc--chHHHHHHCCCCcC
Confidence 5 6799999 44 99999999 3569999999999998887778999999999999986 39999999887776
Q ss_pred CceEEEeccCCCCcCCc--ceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhc
Q 013368 185 LNVGIVLDEGLASTTED--YRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (444)
Q Consensus 185 ~d~~~~~~~g~~~p~~~--~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~ 261 (444)
.|..++++.+..+|++. .......+|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.... ..
T Consensus 238 ~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~--------~~ 309 (478)
T PLN02280 238 VEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSRE--------AN 309 (478)
T ss_pred CCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcc--------cC
Confidence 77777777544345421 112233459999999999999999999999 99999999999987753210 01
Q ss_pred cCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeecccccccCC
Q 013368 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRASLHDKFG 339 (444)
Q Consensus 262 ~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~ 339 (444)
.....+++++.++||. ..|+||++|++.+|+|+.+.++.+++.++|+++++. ..++++++++.. ...
T Consensus 310 ~~~~~tvnvg~I~GG~------~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~~~~~a~~~g~~~~v~~~-----~~~ 378 (478)
T PLN02280 310 PLDSQVVSVTTMDGGN------NLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEVIVEQAGVFRCSATVDFF-----EKQ 378 (478)
T ss_pred CCCCcEEEEEEEEccC------CCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe-----ccc
Confidence 1234689999999997 899999999999999999999999999999988764 234566655521 011
Q ss_pred CCCccccCCCChHHHHHHHHHHHhcCCC--CCceeecCCcchHHHHhcCCCeEEE--ccCCC---CCCCCCCCCccccHH
Q 013368 340 RPILTATDSSNPWWNLLEEAVRKANGKL--GKPEIFPASTDARYFRERGLPAIGF--SPMAN---TPILLHDHNEFLNQA 412 (444)
Q Consensus 340 ~p~~~~~~~~~~l~~~~~~a~~~~~~~~--~~~~~~~g~tD~~~~~~~gip~v~~--gp~~~---~~~~~H~~~E~i~~~ 412 (444)
.+.++++.++.++++.+.+++.+..+.. .......|++|+++|.+. +|++.| |++.. ....+|+++|+++++
T Consensus 379 ~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g~tD~~~~~~~-vP~i~~glG~~~~~~G~~~~~Htp~e~id~~ 457 (478)
T PLN02280 379 NTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMGAEDFSFYSQV-VPAAFYYIGIRNETLGSTHTGHSPYFMIDED 457 (478)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCeeechHHHHHhh-CCEEEEEEeecCCCCCCCCCCCCCCCcCCHH
Confidence 2223346668899999999988765432 111234688999999985 999866 44321 112689999999999
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 013368 413 EYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 413 ~l~~~~~~~~~~l~~l~~ 430 (444)
++..++++|+.++.++.+
T Consensus 458 ~L~~~~~~~~~~~~~~l~ 475 (478)
T PLN02280 458 VLPIGAAVHAAIAERYLI 475 (478)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988764
|
|
| >PRK08554 peptidase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=375.63 Aligned_cols=371 Identities=20% Similarity=0.242 Sum_probs=267.9
Q ss_pred HHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 29 SIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
+.+++|++|++|||+++.+ .+.++++++.++|+++|++++.++.. +.+|+++.+ |. +.++|+|.||+||||+
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~-~~~~l~~~~-~~--~~~~l~l~gH~DtVp~ 77 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKD-GYYAVYGEI-GE--GKPKLLFMAHFDVVPV 77 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecC-CceEEEEEe-CC--CCCEEEEEeccccCCC
Confidence 4789999999999987322 26789999999999999998876653 557999987 43 2378999999999999
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc--cc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF 182 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~ 182 (444)
+++.|+++||++.++ ||++||||++|||++++++|.|++.|++.+ ++++|.|++++|||.|+. +...++++. ..
T Consensus 78 ~~~~w~~~Pf~~~~~-~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~--~~~~i~l~~~~dEE~g~~-~~~~~~~~~~~~~ 153 (438)
T PRK08554 78 NPEEWNTEPFKLTVK-GDKAYGRGSADDKGNVASVMLALKELSKEP--LNGKVIFAFTGDEEIGGA-MAMHIAEKLREEG 153 (438)
T ss_pred CccccccCCceeEEE-CCEEEECCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccCcc-ccHHHHHHHHhcC
Confidence 866799999999998 999999999999999999999999997743 678999999999999863 444665532 11
Q ss_pred ccCceEEEeccCCCCcCCcceeeecccccEEEEEE--------------------Eeec-CCccCCCCCC---CHHHHHH
Q 013368 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIK--------------------ARGA-PGHGAKLYDN---SAMENLF 238 (444)
Q Consensus 183 ~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~--------------------v~G~-~~Hs~~p~~g---nai~~~~ 238 (444)
...|++++.+ |+....++.+++|. +++++ +.|. .+|++.+..+ +++..++
T Consensus 154 ~~~~~~iv~E-----pt~~~~~~~~~kg~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~ 227 (438)
T PRK08554 154 KLPKYMINAD-----GIGMKPIIRRRKGF-GVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAAS 227 (438)
T ss_pred CCCCEEEEeC-----CCCCcchhhcCCce-EEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHH
Confidence 2357888886 44321233333433 34444 4444 4999987665 4677777
Q ss_pred HHHHHHHhchhhhhHHHHhchh-c--cCCceeeeeeeeccCCCC---CC--------------------------Ccccc
Q 013368 239 KSIESVRRFRASQFDLVKAGLK-A--EGEVVSVNMAFLKAGTPS---PN--------------------------GFVMN 286 (444)
Q Consensus 239 ~~i~~l~~l~~~~~~~~~~~~~-~--~~~~~t~~~~~i~~G~~~---~~--------------------------~~~~n 286 (444)
+++..+..+.... .-+.. . .-...++++....+|.-. ++ ....|
T Consensus 228 ~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~p~~g~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~n 303 (438)
T PRK08554 228 HFLRESNVLAVSL----EGKFLKGNVVPGEVTLTYLEPGEGEEVEVDLGLTRLLKAIVPLVRAPIKAEKYSDYGVSITPN 303 (438)
T ss_pred HHHhhcCceEEEE----eeeeeecCcccceeEEEEecCCCCccccccccHHHHHHHHHHHHHHhhccccccccceeeccc
Confidence 7666554321000 00000 0 001122333222222100 00 01445
Q ss_pred cc---cCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHh
Q 013368 287 LQ---PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKA 363 (444)
Q Consensus 287 ~i---p~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~ 363 (444)
++ |++|++++|+|+.+ .+.+++.++|++.+....++++++++. ....|+. .++.++++++.+++++++.
T Consensus 304 ~~~i~~g~a~~~~DiR~~~-~~~e~v~~~i~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~lv~~~~~~~~~~ 375 (438)
T PRK08554 304 VYSFAEGKHVLKLDIRAMS-YSKEDIERTLKEVLEFNLPEAEVEIRT------NEKAGYL-FTPPDEEIVKVALRVLKEL 375 (438)
T ss_pred eEEecCCeEEEEEEEEecC-CCHHHHHHHHHHHhhccCCCceEEEEe------ccCCCCc-CCCCChHHHHHHHHHHHHh
Confidence 55 99999999999988 689999999998886434566666653 1222332 3567899999999999986
Q ss_pred cCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 364 NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 364 ~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
+... .+...+|+||+++++..|+|++.|||+.. .+|++|||++++++.++.++|.+++..|+
T Consensus 376 g~~~-~~~~~~GgtDa~~~~~~Gip~v~~Gp~~~---~~H~~~E~v~i~~l~~~~~i~~~~i~~l~ 437 (438)
T PRK08554 376 GEDA-EPVEGPGASDSRYFTPYGVKAIDFGPKGG---NIHGPNEYVEIDSLKKMPEVYKRIALRLL 437 (438)
T ss_pred CCCc-EEEecCCchHHHHHHhcCCCceEECCCCC---CCCCCcceEEHHHHHHHHHHHHHHHHHHh
Confidence 6443 66677899999999999999999999864 59999999999999999999999998875
|
|
| >PRK06156 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=382.70 Aligned_cols=371 Identities=20% Similarity=0.308 Sum_probs=276.2
Q ss_pred CChhHHHHHHHhhhcccCCCCCC---Ch----hHHHHHHHHHHHHCCCceEEEeecCCCCeE-E-EEecCCCCCCCcEEE
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNP---DY----TNASKFILAQAEALSLESQTLEFAKNKPLI-L-LKWPGSNPQLPSILL 95 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~---~e----~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl-~-~~~~g~~~~~~~i~l 95 (444)
++.++.+++|++|++|||+|+.+ +| ..+++||.++|+++|++++.. .|+ + +.++|. +.|+|+|
T Consensus 43 ~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~------~~~v~~~~~~g~--~~~~l~l 114 (520)
T PRK06156 43 KYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV------DNRVLEIGLGGS--GSDKVGI 114 (520)
T ss_pred hhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec------CCeEEEEEecCC--CCCeEEE
Confidence 45678999999999999997421 22 356789999999999988532 244 4 666554 3479999
Q ss_pred EeecccccCCCCCCcc-----CCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcc
Q 013368 96 NSHTDVVPSEPSKWSH-----HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~-----~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (444)
.|||||||.+...|++ +||.+.++ ||++||||++|||+++++++.|++.|.+.+.+++++|.|+|++|||.|+
T Consensus 115 ~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~-~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~- 192 (520)
T PRK06156 115 LTHADVVPANPELWVLDGTRLDPFKVTLV-GDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDG- 192 (520)
T ss_pred EEecCccCCCCccCccCCccCCCCceEEE-CCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCc-
Confidence 9999999998778999 99999998 9999999999999999999999999998887788999999999999986
Q ss_pred ccHHHHHhccccccCceEEEeccCC----CCcC----------------------------------Ccc----------
Q 013368 171 DGAEKFADSHVFNSLNVGIVLDEGL----ASTT----------------------------------EDY---------- 202 (444)
Q Consensus 171 ~G~~~~~~~~~~~~~d~~~~~~~g~----~~p~----------------------------------~~~---------- 202 (444)
.|++.+++++.. .++.+++|... .+|+ ...
T Consensus 193 ~G~~~~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~ 270 (520)
T PRK06156 193 DPLKYYLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAA 270 (520)
T ss_pred hhHHHHHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHH
Confidence 699999876432 24444444210 0111 000
Q ss_pred ----------eeeecccccE---------EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHh-chhhhh----HHHHh
Q 013368 203 ----------RAFYAERCPW---------WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRR-FRASQF----DLVKA 257 (444)
Q Consensus 203 ----------~i~~~~~G~~---------~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~-l~~~~~----~~~~~ 257 (444)
....+++|.. +++|+++|+++|+|.|+.| |||..+++++..|+. +..... +.+..
T Consensus 271 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~~l~~~~~~~~~~~i~~ 350 (520)
T PRK06156 271 LAAALQAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDGDLPHNHAADAARYIND 350 (520)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccccccchhHHHHHHHHHH
Confidence 0012233544 8999999999999999998 999999999999875 211100 11110
Q ss_pred ch--------------hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--C
Q 013368 258 GL--------------KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--S 321 (444)
Q Consensus 258 ~~--------------~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~ 321 (444)
.. .......+++++.+++|. ++|++++|+|++|.++.+++.++|++.+... .
T Consensus 351 ~~~~~~~g~~~g~~~~~~~~g~~t~~~~~I~gg~------------~~~~l~iDiR~~p~~~~eev~~~I~~~i~~~~~~ 418 (520)
T PRK06156 351 LVGLDYLGEKFGVAYKDDFMGPLTLSPTVVGQDD------------KGTEVTVNLRRPVGKTPELLKGEIADALAAWQAK 418 (520)
T ss_pred hhCCCCccCcCCccccCCCccCcEEeeeEEEEeC------------CeEEEEEEeeCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 00 000012345565555542 5899999999999999999999999887642 2
Q ss_pred CCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCC-CC
Q 013368 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANT-PI 400 (444)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~-~~ 400 (444)
.++++++.. ....|. ..+.++++++.+.+++++..+..+.+...+|+||++++. +++.|||+..+ ..
T Consensus 419 ~gv~ve~~~------~~~~p~--~~~~d~~lv~~l~~a~~~~~G~~~~~~~~~ggTDa~~~~----~~v~fGP~~~g~~~ 486 (520)
T PRK06156 419 HQVALDIDY------YWGEPM--VRDPKGPWLKTLLDVFGHFTGLDAKPVAIAGSTNAKLFP----NAVSFGPAMPGVKY 486 (520)
T ss_pred cCceEEEee------cCCCce--eeCCCCHHHHHHHHHHHHHhCCCCceeeecChhhhhhCC----ccEEEcCCCCCCCC
Confidence 455555542 122333 356689999999999999876554666778999999884 58999996321 23
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 401 LLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 401 ~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.+|++||+++++++.+++++|..++.++++.
T Consensus 487 ~aHt~dE~V~ie~l~~~~~i~~~~l~~l~~~ 517 (520)
T PRK06156 487 TGHTENEFKTVEQFMLDLQMYTEMLIRIGNL 517 (520)
T ss_pred CCcCcccCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999763
|
|
| >PRK05469 peptidase T; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=378.62 Aligned_cols=363 Identities=20% Similarity=0.198 Sum_probs=277.2
Q ss_pred hHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC-CCCCcEEEEee
Q 013368 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~-~~~~~i~l~~H 98 (444)
+.+++.|++|++|||+|.. .++.++++||+++|+++|++...++ ..+|+++.++|+. ++.|+|+|+||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~---~~~~v~~~~~g~~~~~~~~i~l~~H 78 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD---ENGYVMATLPANVDKDVPTIGFIAH 78 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC---CCeEEEEEecCCCCCCCCeEEEEEe
Confidence 5688999999999999743 3478999999999999999743333 3458999997753 23589999999
Q ss_pred cccccCCC----------------------CCCccCCCcceec---CCCeEEecCc----ccchhHHHHHHHHHHHHHHc
Q 013368 99 TDVVPSEP----------------------SKWSHHPFGAHLD---SQGNIFARGS----QDMKCVGMQYLEAIRRLKAS 149 (444)
Q Consensus 99 ~Dtvp~~~----------------------~~W~~~Pf~~~~~---~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~ 149 (444)
|||||..+ +.|.++||.+.+. ..+.+||||+ +|||++++++|.|++.|++.
T Consensus 79 ~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~ 158 (408)
T PRK05469 79 MDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAH 158 (408)
T ss_pred ccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhC
Confidence 99998754 2344444444332 1368999998 99999999999999999887
Q ss_pred CCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCC-C
Q 013368 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-L 228 (444)
Q Consensus 150 ~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p 228 (444)
+..++++|.|+|+++||.| .|++.++.+. + ..+++++++.+ |.+ .+.++.+|..+++|+++|+++|++. |
T Consensus 159 ~~~~~g~v~~~f~~dEE~g--~Ga~~~~~~~-~-~~~~~~~~~~~---~~g--~~~~~~~g~~~~~i~v~Gk~~Ha~~~p 229 (408)
T PRK05469 159 PEIKHGDIRVAFTPDEEIG--RGADKFDVEK-F-GADFAYTVDGG---PLG--ELEYENFNAASAKITIHGVNVHPGTAK 229 (408)
T ss_pred CCCCCCCEEEEEecccccC--CCHHHhhhhh-c-CCcEEEEecCC---Ccc--eEEeccCceeEEEEEEeeecCCCCCCc
Confidence 6667899999999999986 4998886442 2 24667777642 433 4677789999999999999999875 7
Q ss_pred CCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHH
Q 013368 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAE 307 (444)
Q Consensus 229 ~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~ 307 (444)
+.+ ||+..+++++..|+.+.... .......+++++.+++ .|++|++++|+|+.+.++.+
T Consensus 230 ~~g~nAi~~~~~~i~~l~~~~~~~--------~~~~~~~~i~~g~i~g------------gp~~~~i~~diR~~~~e~~e 289 (408)
T PRK05469 230 GKMVNALLLAADFHAMLPADETPE--------TTEGYEGFYHLTSIKG------------TVEEAELSYIIRDFDREGFE 289 (408)
T ss_pred ccccCHHHHHHHHHHhCCCCCCCC--------CCCCceEEEEEEEEEE------------ccceEEEEEEEecCCHHHHH
Confidence 888 99999999999887542110 0001112345555443 47999999999999999999
Q ss_pred HHHHHHHHHhccC--CC-CceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh
Q 013368 308 SLERRIVEEWAPA--SR-NMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE 384 (444)
Q Consensus 308 ~i~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~ 384 (444)
.+.++|+++++.. .. +++++++.. ....+....+.+++++++.+++++++.+... ......|++|+++++.
T Consensus 290 ~i~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lv~~~~~a~~~~g~~~-~~~~~~ggtD~~~~~~ 363 (408)
T PRK05469 290 ARKALMQEIAKKVNAKYGEGRVELEIK-----DQYYNMREKIEPHPHIVDLAKQAMEDLGIEP-IIKPIRGGTDGSQLSF 363 (408)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe-----ehhhhhhhhhcCCHHHHHHHHHHHHHcCCCc-EEecCCCcccHHHHhh
Confidence 9999999888742 12 455555421 1122222246778999999999999875443 3345679999999998
Q ss_pred cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 385 RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 385 ~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.|+|++.|||+.. .+|++||+++++++.+++++|..++..++.+
T Consensus 364 ~giP~v~~gpG~~---~~H~~~E~v~i~~l~~~~~~~~~~~~~~~~~ 407 (408)
T PRK05469 364 MGLPCPNIFTGGH---NFHGKFEFVSLESMEKAVEVIVEIAELTAER 407 (408)
T ss_pred CCCceEEECcCcc---cCcCcceeeEHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999865 4999999999999999999999999888754
|
|
| >PLN02693 IAA-amino acid hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=370.06 Aligned_cols=365 Identities=17% Similarity=0.149 Sum_probs=284.3
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
..+++++++++|+++|+.| .+|.+++++|.++|+++|++++. .. +++|+++.+ |.++ .|+|+|+|||||||..
T Consensus 45 ~~~~~~~~r~~lh~~PE~s--~~E~~ta~~i~~~L~~~G~~~~~-~~--~~~~via~~-g~~~-g~~i~l~~h~DaVp~~ 117 (437)
T PLN02693 45 VFDWMVRIRRKIHENPELG--YEEFETSKLIRSELDLIGIKYRY-PV--AITGIIGYI-GTGE-PPFVALRADMDALPIQ 117 (437)
T ss_pred hHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHHCCCeeEe-cC--CCcEEEEEE-CCCC-CCEEEEEeecCCCcCC
Confidence 3466899999999999996 89999999999999999998763 21 467999998 4333 4899999999999997
Q ss_pred C-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 106 ~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
+ .+|+++||. +|++|||| +|+++|+++.|++.|++.+.+++++|.|+|+++||. + .|++.+++.+.+++
T Consensus 118 e~~~~~~~p~~-----~G~~hacG---hkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~-~-~Ga~~~i~~g~~~~ 187 (437)
T PLN02693 118 EAVEWEHKSKI-----PGKMHACG---HDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEG-L-SGAKKMREEGALKN 187 (437)
T ss_pred CCCCCCCCCCC-----CCCEECCc---chHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccc-h-hhHHHHHHCCCCCC
Confidence 6 679999984 89999766 699999999999999988766789999999999994 3 59999999887765
Q ss_pred CceEEEeccCCCCcCCcceeee----cccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhch
Q 013368 185 LNVGIVLDEGLASTTEDYRAFY----AERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (444)
Q Consensus 185 ~d~~~~~~~g~~~p~~~~~i~~----~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~ 259 (444)
.|.++..+.....+.+ .+.. ..+|..+++|+++|+++|+|.|+.| |||..+++++.+|+.+....
T Consensus 188 ~~~iig~h~~p~~~~g--~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~-------- 257 (437)
T PLN02693 188 VEAIFGIHLSPRTPFG--KAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRE-------- 257 (437)
T ss_pred CCEEEEEecCCCCCCe--eEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhccc--------
Confidence 5655544332111222 1222 2468889999999999999999999 99999999999998763211
Q ss_pred hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeeccccccc
Q 013368 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRASLHDK 337 (444)
Q Consensus 260 ~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 337 (444)
.......+++++.++||. ..|+||++|++++|+|+.+. .+.+.++|+++++. ..++++++++.. .
T Consensus 258 ~~~~~~~ti~vg~i~GG~------~~NvVPd~a~~~~diR~~~~--~~~i~~~i~~i~~~~a~~~g~~~e~~~~-----~ 324 (437)
T PLN02693 258 TDPLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFTG--FTQLQQRIKEIITKQAAVHRCNASVNLT-----P 324 (437)
T ss_pred CCCCCCcEEEEEEEEcCC------CCceECCeEEEEEEEecCCH--HHHHHHHHHHHHHHHHHHhCCcEEEEEe-----e
Confidence 011134689999999997 89999999999999999986 46788999888764 245666665531 1
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCCC--ceeecCCcchHHHHhcCCCeE--EEccCCC--CCCCCCCCCccccH
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLGK--PEIFPASTDARYFRERGLPAI--GFSPMAN--TPILLHDHNEFLNQ 411 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~--~~~~~g~tD~~~~~~~gip~v--~~gp~~~--~~~~~H~~~E~i~~ 411 (444)
...|+++++.++.++++++.++++++.+.... .....|++|++++++ .+|.+ .+|++.. +....|+++|+++.
T Consensus 325 ~~~~~~~~~~nd~~l~~~~~~~~~~~~G~~~~~~~~~~~gseDf~~~~~-~vP~~~~~lG~~~~~~~~~~~H~~~f~~de 403 (437)
T PLN02693 325 NGREPMPPTVNNMDLYKQFKKVVRDLLGQEAFVEAAPEMGSEDFSYFAE-TIPGHFSLLGMQDETNGYASSHSPLYRINE 403 (437)
T ss_pred cCccCCCCccCCHHHHHHHHHHHHHhcCCcceeecCCCceechHHHHHH-HhhhhEEEEecCCCCCCCCCCCCCCcCCCH
Confidence 22444455777889999999999997554311 123458999999998 58976 6676621 11369999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcc
Q 013368 412 AEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 412 ~~l~~~~~~~~~~l~~l~~~ 431 (444)
+.+..++++|+.++..+.+.
T Consensus 404 ~~l~~~~~~~~~~~~~~l~~ 423 (437)
T PLN02693 404 DVLPYGAAIHATMAVQYLKE 423 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998654
|
|
| >TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=373.58 Aligned_cols=352 Identities=18% Similarity=0.231 Sum_probs=267.0
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCcEEEEeecccccC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVPS 104 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~i~l~~H~Dtvp~ 104 (444)
.++++++|++|++|||+| ++|.++++||.++|+++|+++++++ ..|+++.++|.. ++.|+|+|.||+||||.
T Consensus 3 ~~~~~~~l~~l~~i~s~s--~~e~~~~~~l~~~l~~~G~~~~~~~----~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~ 76 (477)
T TIGR01893 3 PSRVFKYFEEISKIPRPS--KNEKEVSNFIVNWAKKLGLEVKQDE----VGNVLIRKPATPGYENHPPIVLQGHMDMVCE 76 (477)
T ss_pred HHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHHHcCCeEEEeC----CCeEEEEEcCCCCCCCCCeEEEEeeccccCC
Confidence 478999999999999875 7889999999999999999987653 359999987642 23588999999999999
Q ss_pred CC----CCCccCCCcceecCCCeEEecCcc---cchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHH
Q 013368 105 EP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (444)
Q Consensus 105 ~~----~~W~~~Pf~~~~~~~g~l~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (444)
++ ..|+.+||++.++ ||++||||++ |||++++++|++++. .+. .+++|.++|++|||.|+ .|++.+.
T Consensus 77 ~~~~~~~~w~~~p~~~~~~-~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~-~~~~i~~~~~~dEE~g~-~Gs~~l~ 150 (477)
T TIGR01893 77 KNEDSLHDFEKDPIELIID-GDWLKARGTTLGADNGIGVAMGLAILED---NNL-KHPPLELLFTVDEETGM-DGALGLD 150 (477)
T ss_pred CCCCCCCCCCCCCeEEEEe-CCEEEECCccccccccHHHHHHHHHHhc---CCC-CCCCEEEEEEeccccCc-hhhhhcC
Confidence 75 3799999999997 9999999995 999999999988764 332 46799999999999885 6999987
Q ss_pred hccccccCceEEEeccCCC------CcCCc-ce----eeec--ccccEEEEEEEee-cCCccCC-CCCC--CHHHHHHHH
Q 013368 178 DSHVFNSLNVGIVLDEGLA------STTED-YR----AFYA--ERCPWWLVIKARG-APGHGAK-LYDN--SAMENLFKS 240 (444)
Q Consensus 178 ~~~~~~~~d~~~~~~~g~~------~p~~~-~~----i~~~--~~G~~~~~i~v~G-~~~Hs~~-p~~g--nai~~~~~~ 240 (444)
... +. .++.++.|.... +|+.. .. +.+. ++|..+++|+++| +++|||. |+.+ ||+..++++
T Consensus 151 ~~~-~~-~~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~ 228 (477)
T TIGR01893 151 ENW-LS-GKILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARV 228 (477)
T ss_pred hhh-cC-CcEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHH
Confidence 643 22 255555552110 12211 01 1111 5899999999999 9999986 7665 999999999
Q ss_pred HHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC
Q 013368 241 IESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA 320 (444)
Q Consensus 241 i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~ 320 (444)
+..|..+. +++++.+.||. ..|+||++|++++|+|..+....+.+.+.+.+.+...
T Consensus 229 i~~l~~~~------------------~~~v~~~~gg~------~~N~ip~~~~~~~diR~~~~~~l~~~~~~~~~~~~~~ 284 (477)
T TIGR01893 229 LNELKENL------------------NFRLSDIKGGS------KRNAIPREAKALIAIDENDVKLLENLVKNFQSKFKSE 284 (477)
T ss_pred HHhhhhcC------------------CeEEEEEeCCC------cccccCCceEEEEEEChhHHHHHHHHHHHHHHHHHHH
Confidence 99887531 24566677765 7888888888888877665555555554444333211
Q ss_pred C-------------------------------------------------------------------------------
Q 013368 321 S------------------------------------------------------------------------------- 321 (444)
Q Consensus 321 ~------------------------------------------------------------------------------- 321 (444)
.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~t~n~g~i~~~~~~~~~~i~~R~~~~~ 364 (477)
T TIGR01893 285 YSELEPNITIEVSKRENSVKVFSENTTDKLINALNGLPNGVQSVSDEEPGLVESSLNLGVVKTKENKVIFTFLIRSSVES 364 (477)
T ss_pred hcccCCCeEEEEEECCCcccccCHHHHHHHHHHHHHCCccceeeccCCCCeEEeeeeEEEEEEcCCEEEEEEEeCCCCch
Confidence 0
Q ss_pred ---------------CCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhc-
Q 013368 322 ---------------RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER- 385 (444)
Q Consensus 322 ---------------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~- 385 (444)
.++++++. ...|++ .++.++++++.+.+++++..+..+.+...+|++|+++|.+.
T Consensus 365 ~~~~i~~~i~~~~~~~~~~v~~~--------~~~~p~-~~~~d~plv~~l~~a~~~~~g~~~~~~~~~Ggtd~~~~~~~~ 435 (477)
T TIGR01893 365 DKDYVTEKIESIAKLAGARVEVS--------AGYPSW-QPDPQSNLLDTARKVYSEMFGEDPEVKVIHAGLECGIISSKI 435 (477)
T ss_pred hHHHHHHHHHHHhhhcCeEEEEe--------cCCCcc-cCCCCCHHHHHHHHHHHHHHCCCCeEEEeecCccHHHHHhhC
Confidence 12222222 233433 36789999999999999987765455677899999999875
Q ss_pred -CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 386 -GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 386 -gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
++|++.|||+.. .+|++||+++++++.+++++|.+++..+
T Consensus 436 ~~i~~v~~Gp~~~---~~H~~nE~i~i~~l~~~~~~~~~ll~~~ 476 (477)
T TIGR01893 436 PDIDMISIGPNIY---DPHSPNERVSISSVEKVWDFLVKVLERL 476 (477)
T ss_pred CCceEEEeCCCCC---CCCCCCceeeHHHHHHHHHHHHHHHHhc
Confidence 788999999764 5999999999999999999999998654
|
|
| >TIGR01887 dipeptidaselike dipeptidase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=368.21 Aligned_cols=360 Identities=19% Similarity=0.288 Sum_probs=263.6
Q ss_pred hHHHHHHHhhhcccCCCC----C------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec-CCCCCCCcEEEE
Q 013368 28 DSIIERFRAYLQIDTSQP----N------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQLPSILLN 96 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~----~------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~-g~~~~~~~i~l~ 96 (444)
++.+++|++|++|||+|. . .++.++++|+.++|+++|++++.+. |+.+... +. +.|+|+|+
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~------~~~~~~~~~~--~~~~l~l~ 73 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVD------NYAGYAEYGQ--GEEYLGIL 73 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEec------CceEEEEeCC--CCCeEEEE
Confidence 468999999999999972 1 1246899999999999999887443 3333322 22 34789999
Q ss_pred eecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHH
Q 013368 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (444)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (444)
||+||||.++ .|+++||++.++ +|+|||||++||||++++++.|++.|++.+.+++++|.|+|+.|||.|+ .|+..+
T Consensus 74 gH~D~Vp~~~-~W~~~Pf~~~~~-~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~-~g~~~~ 150 (447)
T TIGR01887 74 GHLDVVPAGD-GWTSPPFEAEIK-DGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGW-ACIDYY 150 (447)
T ss_pred eecCCCCCCC-CCcCCCCceEEE-CCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCc-HhHHHH
Confidence 9999999975 699999999998 9999999999999999999999999999888888999999999999986 699988
Q ss_pred Hhccccc----cCce---EEEeccC----------------------CCCcCCcc----eeeeccc--------------
Q 013368 177 ADSHVFN----SLNV---GIVLDEG----------------------LASTTEDY----RAFYAER-------------- 209 (444)
Q Consensus 177 ~~~~~~~----~~d~---~~~~~~g----------------------~~~p~~~~----~i~~~~~-------------- 209 (444)
++..... ..|. +++.+.| ..+|++.. .++++.+
T Consensus 151 l~~~~~~~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~ 230 (447)
T TIGR01887 151 FEHEEAPDIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFI 230 (447)
T ss_pred HHhcCCCCEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhh
Confidence 8753211 0111 1211111 11343311 1345544
Q ss_pred -----ccE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHH--hchhhhhHHHHhch-----------hc---c
Q 013368 210 -----CPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVR--RFRASQFDLVKAGL-----------KA---E 262 (444)
Q Consensus 210 -----G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~--~l~~~~~~~~~~~~-----------~~---~ 262 (444)
|.. +++|+++|+++|+|.|+.| |||..+++++..+. ++....++.+..-. .. .
T Consensus 231 ~~~~~g~~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 310 (447)
T TIGR01887 231 AKELEGSFEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDV 310 (447)
T ss_pred hcCcceEEEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCC
Confidence 777 7999999999999999999 99999999999886 32222222111100 00 0
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
...+|+|++.|++| +|++|++++|+|+++.++.+++.+++.+.+. +. .+.... ....|.
T Consensus 311 ~~~~t~nvg~I~~g-----------~p~~~~~~~d~R~~p~~~~e~~~~~i~~~~~----~~-~~~~~~-----~~~~p~ 369 (447)
T TIGR01887 311 SGDLTMNVGVIDYE-----------NAEAGLIGLNVRYPVGNDPDTMLKNELAKES----GI-VEVTEN-----GYLKPL 369 (447)
T ss_pred cCCcEEEEEEEEEe-----------CCcEEEEEEEEecCCCCCHHHHHHHHHHHhh----Cc-EEEEEc-----cCCCCe
Confidence 12467888888875 2889999999999999999988777765442 11 122210 123455
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCC-CCCCCCCCCccccHHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMAN-TPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~-~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
+ .+.++++++.+.+++++..+..+.+...+|+||++++. +++.|||... ...++|++||+++++++..++++|
T Consensus 370 ~--~~~~~~lv~~l~~~~~~~~g~~~~~~~~~ggtda~~~~----~~i~~Gp~~pG~~~~aH~~dE~v~i~~l~~~~~i~ 443 (447)
T TIGR01887 370 Y--VPKDDPLVQTLMKVYEKQTGDEGTPVAIGGGTYARLME----NGVAFGALFPGEEDTMHQANEYIMIDDLLLATAIY 443 (447)
T ss_pred E--ECCCCHHHHHHHHHHHHHhCCCCCeeEecchhhhhhCC----CcEEeCCCCCCCCCCccCCCcceeHHHHHHHHHHH
Confidence 4 46689999999999999876554556678889988763 4688996421 123699999999999999999999
Q ss_pred HHHH
Q 013368 422 ESII 425 (444)
Q Consensus 422 ~~~l 425 (444)
..++
T Consensus 444 ~~~~ 447 (447)
T TIGR01887 444 AEAI 447 (447)
T ss_pred HHhC
Confidence 8864
|
This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific. |
| >TIGR01882 peptidase-T peptidase T | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=369.31 Aligned_cols=355 Identities=15% Similarity=0.180 Sum_probs=271.5
Q ss_pred hHHHHHHHhhhcccCCCC--------CCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCCC-CCcEEEEe
Q 013368 28 DSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQ-LPSILLNS 97 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~~-~~~i~l~~ 97 (444)
+++++.+.+|++|+|+|. +.++++.+++|+++|+++|++ ++. +. +..||+|.++|..+. .|.|+|.+
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~-d~--~~gnv~~~~~~~~~~~~~~i~~~a 79 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHY-DE--KNGYVIATIPSNTDKDVPTIGFLA 79 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEE-cC--CceEEEEEecCCCCCCCCEEEEEE
Confidence 688999999999999973 114458999999999999997 554 31 256999999876431 38999999
Q ss_pred ecccccCC-CC-------------------------CCccCCCcc------e-ecCCCeEEecCcccchhHHHHHHHHHH
Q 013368 98 HTDVVPSE-PS-------------------------KWSHHPFGA------H-LDSQGNIFARGSQDMKCVGMQYLEAIR 144 (444)
Q Consensus 98 H~Dtvp~~-~~-------------------------~W~~~Pf~~------~-~~~~g~l~GrG~~D~k~~~a~~l~a~~ 144 (444)
|||||+.. .. .|.++||+. . .+ ++.+|| +|||+++|++|.|++
T Consensus 80 HmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~-g~~l~G---~D~KgglAa~l~A~~ 155 (410)
T TIGR01882 80 HVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTD-GTTLLG---ADDKAGIAEIMTAAD 155 (410)
T ss_pred ecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcC-CCEeec---ccCHHHHHHHHHHHH
Confidence 99999842 12 689999995 2 43 779999 999999999999999
Q ss_pred HHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCc
Q 013368 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH 224 (444)
Q Consensus 145 ~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~H 224 (444)
.|++.+..++++|.|+|+++||.|. |++.+..++ + ..+++++++. +|++ .+.+..+|..+++|+++|+++|
T Consensus 156 ~L~e~~~~~~g~I~~~ft~dEE~g~--Ga~~l~~~~-~-~~~~~~~i~g---ep~g--~i~~~~~g~~~~~I~v~Gk~aH 226 (410)
T TIGR01882 156 YLINHPEIKHGTIRVAFTPDEEIGR--GAHKFDVKD-F-NADFAYTVDG---GPLG--ELEYETFSAAAAKITIQGNNVH 226 (410)
T ss_pred HHHhCCCCCCCCEEEEEECcccCCc--Ccchhhhhh-c-CccEEEEeCC---CCCC--eEEEccccceEEEEEEEEEecC
Confidence 9988643458899999999999863 888876543 2 3567777773 4655 4666668999999999999999
Q ss_pred cCCC-CCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCC
Q 013368 225 GAKL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPP 302 (444)
Q Consensus 225 s~~p-~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~ 302 (444)
++.+ +.+ ||+..+.+++..|...... ..++-+.+.+++| ..|.+|++|++.+|+|+.+
T Consensus 227 a~~~~~~g~nAi~~a~~~~~~l~~~~~~-------------~~t~~~~g~i~~g-------~i~giPd~a~l~~diR~~~ 286 (410)
T TIGR01882 227 PGTAKGKMINAAQIAIDLHNLLPEDDRP-------------EYTEGREGFFHLL-------SIDGTVEEAKLHYIIRDFE 286 (410)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCcCCC-------------ccccceeEEEEEE-------eEEEecCEEEEEEEEecCC
Confidence 9975 456 9999888876655432110 0011112334444 4566999999999999999
Q ss_pred CCCHHHHHHHHHHHhccC--CCC---ceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCc
Q 013368 303 TTDAESLERRIVEEWAPA--SRN---MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST 377 (444)
Q Consensus 303 ~~~~~~i~~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~t 377 (444)
.++.+.+.++|+++++.. ..+ +++++.. .+.+......+++++++.+.+++++.+..+ ......|+|
T Consensus 287 ~e~~e~i~~~i~~i~~~~~~~~g~~~v~~~~~~-------~~~~~~~~~~~~~~lv~~~~~a~~~~G~~~-~~~~~~ggt 358 (410)
T TIGR01882 287 KENFQERKELMKRIVEKMNNEYGQDRIKLDMND-------QYYNMAEKIEKVMEIVDIAKQAMENLGIEP-KISPIRGGT 358 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEEEEEEe-------eecChhhccCCCHHHHHHHHHHHHHhCCCC-cccccceec
Confidence 999999999999888642 122 3343332 122211246678999999999999876554 444567899
Q ss_pred chHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 378 DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 378 D~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
|+++|+..|+|++.||||.. ++|++|||++++++.+++++|..++...+
T Consensus 359 Da~~~~~~Gip~~~~G~G~~---~aHt~dE~v~i~~l~~~~~~~~~li~~~~ 407 (410)
T TIGR01882 359 DGSQLSYMGLPTPNIFAGGE---NMHGRFEYISVDNMVKAVDVIVEIAKLNE 407 (410)
T ss_pred hHHHHHhCCCCCCeEcCCcc---cCcCCceEEEHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999863 59999999999999999999999998765
|
This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides. |
| >TIGR01891 amidohydrolases amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=350.52 Aligned_cols=346 Identities=18% Similarity=0.216 Sum_probs=270.5
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCc
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~ 110 (444)
++++++|++|||+| ++|.++++||.++|+++|++++... .+..|+++++.+..+ .|+|+|.||+||||.++ |+
T Consensus 2 ~~~~~~L~~ips~s--~~E~~~a~~l~~~l~~~g~~~~~~~--~~~~~vva~~~~~~~-~~~i~l~gH~DtVp~~~--~~ 74 (363)
T TIGR01891 2 TDIRRHLHEHPELS--FEEFKTSSLIAEALESLGIEVRRGV--GGATGVVATIGGGKP-GPVVALRADMDALPIQE--QT 74 (363)
T ss_pred hHHHHHHhcCCCCC--CchHHHHHHHHHHHHHcCCceEecC--CCCcEEEEEEeCCCC-CCEEEEEeccCCCCccc--cc
Confidence 57899999999996 7899999999999999999987522 245799999865433 38999999999999864 67
Q ss_pred cCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEE
Q 013368 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (444)
Q Consensus 111 ~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~ 190 (444)
.+||.+. + +|++||||+ ++++++++.|++.|++.+..++++|.|+|++|||.+ .|++++++++.+++.|++++
T Consensus 75 ~~pf~~~-~-~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~--~G~~~~~~~~~~~~~d~~i~ 147 (363)
T TIGR01891 75 DLPYKST-N-PGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGG--GGATKMIEDGVLDDVDAILG 147 (363)
T ss_pred CCCcccC-C-CCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCc--chHHHHHHCCCCCCcCEEEE
Confidence 7999975 5 899999997 478899999999988876667899999999999985 59999998776666788888
Q ss_pred eccCCCCcCCc--ceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCcee
Q 013368 191 LDEGLASTTED--YRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (444)
Q Consensus 191 ~~~g~~~p~~~--~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t 267 (444)
++.....+.+. .....+++|..+++|+++|+++|++.|+.+ ||+..+++++++|+.+..... ......+
T Consensus 148 ~e~~~~~~~~~~~~~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~--------~~~~~~~ 219 (363)
T TIGR01891 148 LHPDPSIPAGTVGLRPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNV--------DPSRPAV 219 (363)
T ss_pred ECCCCCCCCeEEEECCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccC--------CCCCCcE
Confidence 86532223321 122345688999999999999999889888 999999999999987532110 0112467
Q ss_pred eeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccc
Q 013368 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTA 345 (444)
Q Consensus 268 ~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 345 (444)
++++.+++|. ..|+||++|++.+|+|+.+.++.+++.++|+++++.. ..+++++++. ....|.
T Consensus 220 ~~i~~i~gG~------~~nvvP~~~~~~~diR~~~~~~~e~~~~~i~~~~~~~~~~~~~~ve~~~------~~~~p~--- 284 (363)
T TIGR01891 220 VTVGIIEAGG------APNVIPDKASMSGTVRSLDPEVRDQIIDRIERIVEGAAAMYGAKVELNY------DRGLPA--- 284 (363)
T ss_pred EEEEEEEcCC------CCcEECCeeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE------ecCCCC---
Confidence 9999999987 8999999999999999999999999999999888642 2356677664 133443
Q ss_pred cCCCChHHHHHHHHHHHhcC-CC--CCceeecCCcchHHHHhcCCCe-EEEccCCCC----CCCCCCCCccccHHHH
Q 013368 346 TDSSNPWWNLLEEAVRKANG-KL--GKPEIFPASTDARYFRERGLPA-IGFSPMANT----PILLHDHNEFLNQAEY 414 (444)
Q Consensus 346 ~~~~~~l~~~~~~a~~~~~~-~~--~~~~~~~g~tD~~~~~~~gip~-v~~gp~~~~----~~~~H~~~E~i~~~~l 414 (444)
...++++++.++++++++.+ .. ..+..++|++|++++++. +|+ +.|.|.... +...|++++.++.+-+
T Consensus 285 ~~~~~~l~~~l~~a~~~~~g~~~~~~~~~~~~gg~Da~~~~~~-~P~~~~f~~~~~~~~~~~~~~h~~~~~~~~~~~ 360 (363)
T TIGR01891 285 VTNDPALTQILKEVARHVVGPENVAEDPEVTMGSEDFAYYSQK-VPGAFFFLGIGNEGTGLSHPLHHPRFDIDEEAL 360 (363)
T ss_pred ccCCHHHHHHHHHHHHHhcCccceeccCCCCccccCHHHHHHh-CCeeEEEEecCCCCCCCCCCCCCCCCcCChHHh
Confidence 33578999999999999754 22 123356799999999986 886 467676532 1368999988887654
|
This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site. |
| >PRK12893 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=355.80 Aligned_cols=351 Identities=17% Similarity=0.219 Sum_probs=271.0
Q ss_pred CChhHHHHHHHhhhcccCCCC--------CCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEE
Q 013368 25 KSDDSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~ 96 (444)
.+.+++++++++|++|+|.++ +++|.++++||.++|+++|++++.. ...|++++++|.++..|+|+|.
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~----~~~n~~a~~~g~~~~~~~l~l~ 82 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD----AIGNLFGRRAGTDPDAPPVLIG 82 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEeCCCCCCCCEEEEE
Confidence 356889999999999998642 3448899999999999999998753 3459999997754335889999
Q ss_pred eecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----cccc
Q 013368 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDG 172 (444)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G 172 (444)
||+||||.+ |. .|+|++++++|.|++.|++.+..++++|.|+|++|||.| ++.|
T Consensus 83 ~H~DtVp~~----------------g~------~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G 140 (412)
T PRK12893 83 SHLDTQPTG----------------GR------FDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLG 140 (412)
T ss_pred ecccCCCCC----------------Cc------ccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccccccccccc
Confidence 999999964 22 356789999999999999988888999999999999986 2468
Q ss_pred HHHHHhccccc------c-------------------------CceEEEec--cCCC---CcCCcceeeecccccEEEEE
Q 013368 173 AEKFADSHVFN------S-------------------------LNVGIVLD--EGLA---STTEDYRAFYAERCPWWLVI 216 (444)
Q Consensus 173 ~~~~~~~~~~~------~-------------------------~d~~~~~~--~g~~---~p~~~~~i~~~~~G~~~~~i 216 (444)
+.++......+ . .+.++.++ .|.. .+. ...++++++|..+++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~kG~~~~~i 219 (412)
T PRK12893 141 SGVFTGALPLDDALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGL-PIGVVTGIQGIRWLEV 219 (412)
T ss_pred HHHHhCcCChHHHHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCC-cEEEEeeecccEEEEE
Confidence 88887542200 0 01111111 1100 111 3568899999999999
Q ss_pred EEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCCCCCcccccccCce
Q 013368 217 KARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSEA 292 (444)
Q Consensus 217 ~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~~~~~~~n~ip~~~ 292 (444)
+++|+++|+|. |+ .| |||..+++++..|+.+... ....++++++.+++| . ..|+||++|
T Consensus 220 ~v~G~~aHas~~p~~~G~NAI~~a~~~i~~l~~~~~~-----------~~~~~~~~vg~i~ggg~------~~NvVP~~a 282 (412)
T PRK12893 220 TVEGQAAHAGTTPMAMRRDALVAAARIILAVERIAAA-----------LAPDGVATVGRLRVEPN------SRNVIPGKV 282 (412)
T ss_pred EEEEECCCcCCCcchhccCHHHHHHHHHHHHHHHHHh-----------cCCCceEEEEEEEeeCC------CceEECCee
Confidence 99999999986 74 67 9999999999999875321 112357899999874 4 889999999
Q ss_pred EEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCc
Q 013368 293 EAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP 370 (444)
Q Consensus 293 ~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~ 370 (444)
++++|+|+.|.++.+++.++|+++++.. .+++++++.. ....|+ ...++++++.+.+++++.+.+. .+
T Consensus 283 ~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~v~~~~------~~~~~~---~~~d~~l~~~l~~~~~~~g~~~-~~ 352 (412)
T PRK12893 283 VFTVDIRHPDDARLDAMEAALRAACAKIAAARGVQVTVET------VWDFPP---VPFDPALVALVEAAAEALGLSH-MR 352 (412)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE------EecCCC---cCCCHHHHHHHHHHHHHcCCCc-cc
Confidence 9999999999999999999999888642 2456666553 122332 3457899999999998865443 34
Q ss_pred eeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 371 EIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 371 ~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
...+|+||+++|+..+.+++.|||+... .+|++||+++++++.+++++|..++..++++
T Consensus 353 ~~~~g~tD~~~~~~~~p~~v~~gp~~~~--~~Hs~dE~v~i~~l~~~~~i~~~ll~~~~~~ 411 (412)
T PRK12893 353 MVSGAGHDAMFLARVAPAAMIFVPCRGG--ISHNEAEDTEPADLAAGANVLLHAVLELAGR 411 (412)
T ss_pred cCCccHHHHHHHHhhCCEEEEEeecCCC--CCCCccccCCHHHHHHHHHHHHHHHHHhhcc
Confidence 4567899999999875447899998654 6899999999999999999999999998654
|
|
| >PRK15026 aminoacyl-histidine dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=351.55 Aligned_cols=346 Identities=16% Similarity=0.187 Sum_probs=262.4
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCcEEEEeeccccc
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDVVP 103 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~i~l~~H~Dtvp 103 (444)
..+++++++++|++|||+| ++|.++++||.++++++|++++..+ ..|+++..++.. .+.|.|+|.|||||||
T Consensus 8 ~~~~~~~~l~~Lv~ips~S--~~e~~~~~~l~~~~~~~G~~~~~d~----~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~ 81 (485)
T PRK15026 8 SPQPLWDIFAKICSIPHPS--YHEEQLAEYIVGWAKEKGFHVERDQ----VGNILIRKPATAGMENRKPVVLQAHLDMVP 81 (485)
T ss_pred CHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHhCCCEEEEEe----cCeEEEEEcCCCCCCCCCEEEEEeeecccC
Confidence 4678999999999999985 7888999999999999999987643 348999876431 2358899999999999
Q ss_pred CCC----CCCccCCCcceecCCCeEEecCc---ccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHH
Q 013368 104 SEP----SKWSHHPFGAHLDSQGNIFARGS---QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (444)
Q Consensus 104 ~~~----~~W~~~Pf~~~~~~~g~l~GrG~---~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (444)
+.+ .+|+.+||++.++ ||++||||+ +|||++++++|.++ .+.+. .+++|.++|++|||.|+ .|++.+
T Consensus 82 ~~~~~~~~~w~~~P~~~~i~-~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~-~~~~i~~l~t~dEE~G~-~ga~~l 155 (485)
T PRK15026 82 QKNNDTVHDFTKDPIQPYID-GEWVKARGTTLGADNGIGMASALAVL---ADENV-VHGPLEVLLTMTEEAGM-DGAFGL 155 (485)
T ss_pred CCCCCccccCCCCCceEEEc-CCEEEeCCccccCccHHHHHHHHHHH---HhCCC-CCCCEEEEEEcccccCc-HhHHHh
Confidence 975 2699999999997 999999999 59999999988776 34444 37899999999999985 799998
Q ss_pred HhccccccCceEEEeccCCCCcCCcceeeecc------------------cccEEEEEEEee-cCCccCC-CCCC--CHH
Q 013368 177 ADSHVFNSLNVGIVLDEGLASTTEDYRAFYAE------------------RCPWWLVIKARG-APGHGAK-LYDN--SAM 234 (444)
Q Consensus 177 ~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~------------------~G~~~~~i~v~G-~~~Hs~~-p~~g--nai 234 (444)
.. ..+ ..++++++|.. ....++.++ +|..+++|+++| +++|||. ++.| ||+
T Consensus 156 ~~-~~~-~~~~~i~~e~~-----~~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi 228 (485)
T PRK15026 156 QS-NWL-QADILINTDSE-----EEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNAN 228 (485)
T ss_pred hh-ccC-CcCEEEEeCCC-----CCCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHH
Confidence 65 233 35889999753 112343333 567889999999 9999995 7766 999
Q ss_pred HHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecC-------------
Q 013368 235 ENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVP------------- 301 (444)
Q Consensus 235 ~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~------------- 301 (444)
..+++++..+.. .++++++.++||. +.|+||.+|++.+++|..
T Consensus 229 ~~la~~l~~~~~------------------~~~~~v~~i~GG~------~~NaIp~~a~a~i~~~~~~~~~~~~~~~~~~ 284 (485)
T PRK15026 229 KLLVRFLAGHAE------------------ELDLRLIDFNGGT------LRNAIPREAFATIAVAADKVDALKSLVNTYQ 284 (485)
T ss_pred HHHHHHHHHhHh------------------hCCeEEEEEeCCC------ccCCCCCCcEEEEEEChhHHHHHHHHHHHHH
Confidence 999999988541 1345555555555 555555555555555544
Q ss_pred --------------------------------------------------------------------------------
Q 013368 302 -------------------------------------------------------------------------------- 301 (444)
Q Consensus 302 -------------------------------------------------------------------------------- 301 (444)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Gv~~~s~~~~g~v~~S~Nlg~v~~~~~~~~i~~~~ 364 (485)
T PRK15026 285 EILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLI 364 (485)
T ss_pred HHHHHHhcccCCCeEEEEEEccccccccCHHHHHHHHHHHHHCCcccEEeccCCCCeEEeeeEEEEEEEeCCEEEEEEEe
Confidence
Q ss_pred ---CCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcc
Q 013368 302 ---PTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 378 (444)
Q Consensus 302 ---~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD 378 (444)
+..+.+++.++|+.+.+ ..+.++++. ..+|++ ..++++++++.+.++++++.+..+.+....+++|
T Consensus 365 Rs~~~~~~~~i~~~i~~~~~--~~g~~~~~~--------~~~p~w-~~~~ds~lv~~l~~~y~e~~G~~~~~~~ihaglE 433 (485)
T PRK15026 365 RSLIDSGKDYVVSMLDSLGK--LAGAKTEAK--------GAYPGW-QPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLE 433 (485)
T ss_pred cCCCchHHHHHHHHHHHHHH--HcCcEEEEe--------CCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEEeh
Confidence 33333333333333221 112222222 346665 4678999999999999999887656677889999
Q ss_pred hHHHHhc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 379 ARYFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 379 ~~~~~~~--gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
++.|.+. ++|++.|||... .+|++||+++++++....+++..+|.++
T Consensus 434 cG~~~~~~p~i~~VsfGP~~~---~~HspdE~v~I~s~~~~~~~l~~~l~~~ 482 (485)
T PRK15026 434 CGLFKKPYPEMDMVSIGPTIT---GPHSPDEQVHIESVGHYWTLLTELLKEI 482 (485)
T ss_pred HHHHHhhCCCCCEEEECCCCC---CCCCCCcEEEhHHHHHHHHHHHHHHHhh
Confidence 9999864 899999999975 4999999999999988888888888877
|
|
| >PRK12892 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=353.72 Aligned_cols=348 Identities=17% Similarity=0.157 Sum_probs=270.0
Q ss_pred CChhHHHHHHHhhhcccC-------CCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEe
Q 013368 25 KSDDSIIERFRAYLQIDT-------SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s-------~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
.+.+++++++.+|++|+| +|.+++|.++++||.++|+++|++++.. +++|++++++|.+++ |.|+|.|
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~nl~a~~~g~~~~-~~l~l~g 81 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID----GIGNVFGRLPGPGPG-PALLVGS 81 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCC-CeEEEEc
Confidence 346789999999999998 4445678899999999999999998753 456999999876554 8899999
Q ss_pred ecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----ccccH
Q 013368 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (444)
|+||||.+ |++|| |+|++++|.|++.|++.+..++++|.|++++|||.+ +..|+
T Consensus 82 H~DtVp~~----------------g~~dg------~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs 139 (412)
T PRK12892 82 HLDSQNLG----------------GRYDG------ALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGS 139 (412)
T ss_pred cccCCCCC----------------Ccccc------hHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccH
Confidence 99999974 34433 469999999999999998888999999999999984 45799
Q ss_pred HHHHhcccc----------cc-------------CceEEEe-------------ccCC-CCcCC-cceeeecccccEEEE
Q 013368 174 EKFADSHVF----------NS-------------LNVGIVL-------------DEGL-ASTTE-DYRAFYAERCPWWLV 215 (444)
Q Consensus 174 ~~~~~~~~~----------~~-------------~d~~~~~-------------~~g~-~~p~~-~~~i~~~~~G~~~~~ 215 (444)
+.++++... +. .|.+++. +.|. .+|++ ...++.+++|..+++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~kG~~~~~ 219 (412)
T PRK12892 140 RAYAGRLDPADALAARCRSDGVPLRDALAAAGLAGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGIVGIWQYR 219 (412)
T ss_pred HHHHcCCCHHHHHhCccCCCCcCHHHHHHHcCCChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEeccceEEE
Confidence 998853110 00 0111111 1111 01211 246899999999999
Q ss_pred EEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCCCCCcccccccCc
Q 013368 216 IKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (444)
Q Consensus 216 i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~~~~~~~n~ip~~ 291 (444)
|+++|+++|+|. |+ .+ ||+..+++++..|+.+... .. ..++++++.+++| . ..|+||++
T Consensus 220 i~v~G~~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~----------~~-~~~~~~vg~i~gg~~------~~NvIP~~ 282 (412)
T PRK12892 220 ITVTGEAGHAGTTPMALRRDAGLAAAEMIAAIDEHFPR----------VC-GPAVVTVGRVALDPG------SPSIIPGR 282 (412)
T ss_pred EEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh----------cC-CCcEEEEEEEEecCC------CCeEECCe
Confidence 999999999876 64 56 9999999999999864221 01 1268999999976 4 88999999
Q ss_pred eEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCC
Q 013368 292 AEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGK 369 (444)
Q Consensus 292 ~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 369 (444)
|++++|+|+.|.++.+++.++|+++++.. .+++++++.. ....|+ ...++++++.+.+++++.+... .
T Consensus 283 a~~~~diR~~p~~~~~~v~~~i~~~~~~~~~~~~~~~e~~~------~~~~~~---~~~d~~lv~~~~~a~~~~g~~~-~ 352 (412)
T PRK12892 283 VEFSFDARHPSPPVLQRLVALLEALCREIARRRGCRVSVDR------IAEYAP---APCDAALVDALRAAAEAAGGPY-L 352 (412)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE------EecCCC---cCCCHHHHHHHHHHHHHcCCCc-c
Confidence 99999999999999999999999888742 3456666553 122333 3457899999999999954443 3
Q ss_pred ceeecCCcchHHHHhcCCC-eEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 370 PEIFPASTDARYFRERGLP-AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 370 ~~~~~g~tD~~~~~~~gip-~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
+...+|++|+++|++. +| ++.|||+... .+|++||+++++++.+++++|..++..++
T Consensus 353 ~~~~~g~tDa~~~~~~-ip~~~~~gp~~~~--~~H~~~E~v~i~~l~~~~~il~~~l~~~~ 410 (412)
T PRK12892 353 EMPSGAGHDAQNMARI-APSAMLFVPSKGG--ISHNPAEDTSPADLAQGARVLADTLRRLA 410 (412)
T ss_pred ccCcchHHHHHHHHhH-CCEEEEEeccCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4456789999999887 88 4679998654 68999999999999999999999998875
|
|
| >PRK09290 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=348.74 Aligned_cols=349 Identities=19% Similarity=0.237 Sum_probs=268.9
Q ss_pred CChhHHHHHHHhhhcc-cCC-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEE
Q 013368 25 KSDDSIIERFRAYLQI-DTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i-~s~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~ 96 (444)
.+.+++++.+++|++| +.. |.+++|.++++||.++|+++|++++.. .++|++++++|.++..|.|+|.
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~----~~~nl~a~~~g~~~~~~~l~l~ 79 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD----AVGNLFGRLEGRDPDAPAVLTG 79 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEecCCCCCCCEEEEe
Confidence 4568899999999999 422 335678999999999999999998753 4569999997643334789999
Q ss_pred eecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----cccc
Q 013368 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDG 172 (444)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G 172 (444)
||+||||++ |..|+|+++|+++.|++.|++.+.+++++|.|++++|||.| +..|
T Consensus 80 gH~DtVp~~----------------------g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G 137 (413)
T PRK09290 80 SHLDTVPNG----------------------GRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLG 137 (413)
T ss_pred cCccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCcccc
Confidence 999999974 12478999999999999999988878899999999999984 3468
Q ss_pred HHHHHhcc-----------------------ccccCceEEEe---------------ccC-CCCcCC-cceeeecccccE
Q 013368 173 AEKFADSH-----------------------VFNSLNVGIVL---------------DEG-LASTTE-DYRAFYAERCPW 212 (444)
Q Consensus 173 ~~~~~~~~-----------------------~~~~~d~~~~~---------------~~g-~~~p~~-~~~i~~~~~G~~ 212 (444)
++.+++.. .++ .|++++. +.| ..+|+. ...++.+++|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~~kG~~ 216 (413)
T PRK09290 138 SRVFTGALTPEDALALRDADGVSFAEALAAIGYD-GDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTGIVGQR 216 (413)
T ss_pred HHHHHcccCHHHHHhccCCCCCCHHHHHHHcCCC-hhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEeeeeccE
Confidence 88776431 011 2332221 000 002332 246889999999
Q ss_pred EEEEEEeecCCccC-CC-CCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCCCCCcccccc
Q 013368 213 WLVIKARGAPGHGA-KL-YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQ 288 (444)
Q Consensus 213 ~~~i~v~G~~~Hs~-~p-~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~~~~~~~n~i 288 (444)
+++|+++|+++|+| .| +.| |||..+++++..|+.+.... ....+++++.+++| . ..|+|
T Consensus 217 ~~~i~v~Gk~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~-----------~~~~~~~~g~i~~g~~------~~NvI 279 (413)
T PRK09290 217 RYRVTFTGEANHAGTTPMALRRDALLAAAEIILAVERIAAAH-----------GPDLVATVGRLEVKPN------SVNVI 279 (413)
T ss_pred EEEEEEEEECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEEcCC------CCeEE
Confidence 99999999999998 58 467 99999999999997653210 12357889998864 4 88999
Q ss_pred cCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCC
Q 013368 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGK 366 (444)
Q Consensus 289 p~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~ 366 (444)
|++|++++|+|+.|.++.+++.++|+++++.. ..++++++.. ....|+ ...++++++.+.+++++.+..
T Consensus 280 P~~a~~~~diR~~p~e~~e~v~~~i~~~~~~~~~~~~~~~e~~~------~~~~~~---~~~d~~lv~~l~~a~~~~g~~ 350 (413)
T PRK09290 280 PGEVTFTLDIRHPDDAVLDALVAELRAAAEAIAARRGVEVEIEL------ISRRPP---VPFDPGLVAALEEAAERLGLS 350 (413)
T ss_pred CCEEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEE------EecCCC---ccCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999888742 2356666553 123333 346789999999999887533
Q ss_pred CCCceeecCCcchHHHHhcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 367 LGKPEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 367 ~~~~~~~~g~tD~~~~~~~gip~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
. .+...+|++|+++|+. ++|+ +.|||+... .+|++||+++++++.+++++|+.++..+++
T Consensus 351 ~-~~~~~~g~tDa~~~~~-~iP~~~~~gp~~~~--~~H~~dE~v~i~~l~~~~~v~~~~l~~l~~ 411 (413)
T PRK09290 351 Y-RRLPSGAGHDAQILAA-VVPTAMIFVPSVGG--ISHNPAEFTSPEDCAAGANVLLHALLELAE 411 (413)
T ss_pred c-cccCCccchHHHHHhc-cCCEEEEEeccCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 3 3445678999999964 6997 678887654 689999999999999999999999998864
|
|
| >PRK12891 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=347.18 Aligned_cols=350 Identities=17% Similarity=0.209 Sum_probs=268.2
Q ss_pred hhHHHHHHHhhhcccC-C-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEee
Q 013368 27 DDSIIERFRAYLQIDT-S-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s-~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H 98 (444)
.+++++.+.+|-+|.+ + +.+++|.++++||.++|+++|++++.. ...|++++++|.+++.|.|+|.||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~----~~gNl~a~~~g~~~~~~~l~~~~H 84 (414)
T PRK12891 9 GERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD----AMGNLFARRAGRDPDAAPVMTGSH 84 (414)
T ss_pred HHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC----CCCCEEEEecCCCCCCCeEEEEec
Confidence 4588899999988843 2 235678999999999999999998864 345999999876555589999999
Q ss_pred cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc----cccHH
Q 013368 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (444)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (444)
+||||.+ |..|||+|++++|+|++.|++.+.+++++|.|++++|||.++ +.|++
T Consensus 85 ~DtVp~g----------------------g~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~ 142 (414)
T PRK12891 85 ADSQPTG----------------------GRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSG 142 (414)
T ss_pred ccCCCCC----------------------ccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHH
Confidence 9999974 235999999999999999999998899999999999999752 34776
Q ss_pred HHH------------------------hccccc-------cCceEEE--eccCCC-CcCC-cceeeecccccEEEEEEEe
Q 013368 175 KFA------------------------DSHVFN-------SLNVGIV--LDEGLA-STTE-DYRAFYAERCPWWLVIKAR 219 (444)
Q Consensus 175 ~~~------------------------~~~~~~-------~~d~~~~--~~~g~~-~p~~-~~~i~~~~~G~~~~~i~v~ 219 (444)
.+. +.+... +.+..+. ++.|.. ++++ ...++.+++|..+++|+++
T Consensus 143 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~kG~~~~~v~v~ 222 (414)
T PRK12891 143 VFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAGQGQRWYEVTLT 222 (414)
T ss_pred HHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeeccCcEEEEEEEE
Confidence 442 222110 0011122 221111 1111 3579999999999999999
Q ss_pred ecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEE
Q 013368 220 GAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGF 296 (444)
Q Consensus 220 G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~ 296 (444)
|+++|+|. |+ .+ |||..+++++..|+.+... .....+++++.|++|. ...|+||++|++.+
T Consensus 223 Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~~~~~~-----------~~~~~t~~vg~I~gG~-----~~~NvVP~~~~~~~ 286 (414)
T PRK12891 223 GVDAHAGTTPMAFRRDALVGAARMIAFLDALGRR-----------DAPDARATVGMIDARP-----NSRNTVPGECFFTV 286 (414)
T ss_pred eECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCeEEEEEEEEeeC-----CCcceECCeEEEEE
Confidence 99999984 76 46 9999999999999865321 0123589999999862 17899999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeec
Q 013368 297 DIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFP 374 (444)
Q Consensus 297 d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~ 374 (444)
|+|+.|.++.+++.++|+++++.. .+++++++.. ....|+ ...++++++.+.+++++.+.+. .....+
T Consensus 287 diR~~~~e~~e~v~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~d~~lv~~l~~a~~~~G~~~-~~~~~~ 356 (414)
T PRK12891 287 EFRHPDDAVLDRLDAALRAELARIADETGLRADIEQ------IFGYAP---APFAPGCIDAVRDAARALGLSH-MDIVSG 356 (414)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE------EecCCC---cCCCHHHHHHHHHHHHHcCCCc-eecCCc
Confidence 999999999999999999888632 3456666653 123333 3457899999999997765443 334567
Q ss_pred CCcchHHHHhcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 375 ASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 375 g~tD~~~~~~~gip~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
|++|+.++. .|+|+ +.|||+... .+|++||+++++++..++++|..++..++..
T Consensus 357 ggtDa~~~~-~giPt~~~~gp~~~~--~aH~~dE~v~i~~l~~~~~il~~~l~~~~~~ 411 (414)
T PRK12891 357 AGHDACFAA-RGAPTGMIFVPCVDG--LSHNEAEAITPEWFAAGADVLLRAVLQSAQE 411 (414)
T ss_pred chHHHHHHH-hhCCEEEEEEcCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhhh
Confidence 899988874 48997 779998764 6899999999999999999999999998653
|
|
| >PRK12890 allantoate amidohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=345.19 Aligned_cols=348 Identities=16% Similarity=0.182 Sum_probs=267.9
Q ss_pred ChhHHHHHHHhhhcccCC-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEee
Q 013368 26 SDDSIIERFRAYLQIDTS-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H 98 (444)
+.+++++.+.+|.+||-. |.+++|.++++||.++|+++|++++.. .+.|++++++|..++.|+|+|.||
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----~~~nlia~~~g~~~~~~~l~~~~H 82 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD----AAGNLFGRLPGRDPDLPPLMTGSH 82 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc----CCCcEEEEeCCCCCCCCEEEEeCc
Confidence 356888999999988821 224689999999999999999998864 345999999775444589999999
Q ss_pred cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc----cccHH
Q 013368 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----HDGAE 174 (444)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----~~G~~ 174 (444)
+||||.+ |..|||++++++|.|++.|.+.+..++++|.|++++|||.|+ +.|++
T Consensus 83 ~DtVp~~----------------------g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~ 140 (414)
T PRK12890 83 LDTVPNG----------------------GRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSR 140 (414)
T ss_pred ccCCCCC----------------------CCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHH
Confidence 9999974 346999999999999999998887789999999999999742 35776
Q ss_pred HHHhccc-----------------------cccCceEEE--ec-------------cCCC---CcCCcceeeecccccEE
Q 013368 175 KFADSHV-----------------------FNSLNVGIV--LD-------------EGLA---STTEDYRAFYAERCPWW 213 (444)
Q Consensus 175 ~~~~~~~-----------------------~~~~d~~~~--~~-------------~g~~---~p~~~~~i~~~~~G~~~ 213 (444)
.+..... + ..|.+.+ .+ .|.. .++ ...++.+++|..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~-~~~i~~~~kG~~~ 218 (414)
T PRK12890 141 ALAGTLDVEAVLATRDDDGTTLAEALRRIGG-DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGL-PIGVVTAIQGIRR 218 (414)
T ss_pred HHHcccChHHHHhccCCCCCCHHHHHHHcCC-ChhhccccccCCCCccEEEEEeeCcCHHHHhCCC-ceEEEEeecCcEE
Confidence 6654211 0 0121111 11 0100 011 2568899999999
Q ss_pred EEEEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCCCCCccccccc
Q 013368 214 LVIKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQP 289 (444)
Q Consensus 214 ~~i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~~~~~~~n~ip 289 (444)
++|+++|+++|+|. |+ .+ |||..+++++.+|+.+.... ...++++++.+++| . ..|+||
T Consensus 219 ~~i~v~Gk~aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~-----------~~~~~~~~g~i~~gg~------~~NvIP 281 (414)
T PRK12890 219 QAVTVEGEANHAGTTPMDLRRDALVAAAELVTAMERRARAL-----------LHDLVATVGRLDVEPN------AINVVP 281 (414)
T ss_pred EEEEEEEECCCCCcCChhhccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEECCC------CceEEC
Confidence 99999999999986 75 55 99999999999998753211 02357889999874 4 899999
Q ss_pred CceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCC
Q 013368 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKL 367 (444)
Q Consensus 290 ~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~ 367 (444)
++|++++|+|+.|.++.+++.++|+++++.. ..+++++++. ....|+ ...++++++.+.+++++.+...
T Consensus 282 ~~a~~~~diR~~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~l~~~l~~~~~~~g~~~ 352 (414)
T PRK12890 282 GRVVFTLDLRSPDDAVLEAAEAALLAELEAIAAARGVRIELER------LSRSEP---VPCDPALVDAVEAAAARLGYPS 352 (414)
T ss_pred CeEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE------eecCCC---cCCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999998887642 2356666553 122333 3457899999999998865443
Q ss_pred CCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 368 GKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 368 ~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
.....+|+||+++|+..+++++.|||+... .+|++||+++++++.+++++|+.++..+++
T Consensus 353 -~~~~~~g~tDa~~~~~~gp~~~~~gp~~~~--~aHs~dE~v~i~~l~~~~~i~~~ll~~l~~ 412 (414)
T PRK12890 353 -RRMPSGAGHDAAAIARIGPSAMIFVPCRGG--ISHNPEEAMDPEDLAAGARVLLDAVLRLDR 412 (414)
T ss_pred -eecCCcccHHHHHHHhhCCEEEEEecCCCC--CCCCcCccCCHHHHHHHHHHHHHHHHHHhh
Confidence 334467899999999988667789998654 699999999999999999999999998854
|
|
| >TIGR01879 hydantase amidase, hydantoinase/carbamoylase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=337.13 Aligned_cols=346 Identities=15% Similarity=0.176 Sum_probs=262.3
Q ss_pred HHHHHHHhhhcccC-C-------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 29 SIIERFRAYLQIDT-S-------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 29 ~~~~~l~~l~~i~s-~-------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
++++.+..+-++.+ + +.+++|.++++||+++|+++|++++.. ..+||+++++|.+++.|.|+|.||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~~~~~~----~~~nl~a~~~g~~~~~~~l~~~~H~D 77 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGLEVRFD----EVGNLIGRKEGTEPPLEVVLSGSHID 77 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCCEEEEe----cCCcEEEEecCCCCCCCEEEEecccc
Confidence 34556666666522 1 235679999999999999999998754 34699999987654458999999999
Q ss_pred cccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----ccccHHHH
Q 013368 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEKF 176 (444)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~~ 176 (444)
|||.+ |++ |++.|++++|++++.|++.+.+++++|.|+++++||.+ ++.|++.+
T Consensus 78 tV~~g----------------g~~------dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~ 135 (401)
T TIGR01879 78 TVVNG----------------GNF------DGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNM 135 (401)
T ss_pred cCCCC----------------Ccc------CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHH
Confidence 99974 333 33458999999999999999889999999999999973 35799888
Q ss_pred Hhccccc--------------------cCceEEEe---------------ccCCC-C-cCCcceeeecccccEEEEEEEe
Q 013368 177 ADSHVFN--------------------SLNVGIVL---------------DEGLA-S-TTEDYRAFYAERCPWWLVIKAR 219 (444)
Q Consensus 177 ~~~~~~~--------------------~~d~~~~~---------------~~g~~-~-p~~~~~i~~~~~G~~~~~i~v~ 219 (444)
+.....+ ..+..++. +.|.. + .+....++.+++|..+++|+++
T Consensus 136 ~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~~G~~~~~i~v~ 215 (401)
T TIGR01879 136 VGLANPEDVRNICDAKGISFAEAMKACGPDLPNQPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAIAGQRWYKVTLN 215 (401)
T ss_pred hcccchhHHHhCcCCCCCCHHHHHHHcCCCcccccccccccccEEEEEEEcCCcChhhCCCeEEEEEEecCcEEEEEEEE
Confidence 7532000 00111111 11110 0 1112578999999999999999
Q ss_pred ecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEE
Q 013368 220 GAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGF 296 (444)
Q Consensus 220 G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~ 296 (444)
|+++|+|. |+ .+ ||+..+++++..|+.+.... ....+.+++.+++|. ...|+||++|++.+
T Consensus 216 G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l~~~~-----------~~~~~~~vg~i~~g~-----~~~NvVP~~a~~~~ 279 (401)
T TIGR01879 216 GESNHAGTTPMSLRRDPLVAASRIIHQVEEKAKRM-----------GDPTVGTVGKVEARP-----NGVNVIPGKVTFTL 279 (401)
T ss_pred EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-----------CCCeEEEEEEEEecC-----CceEEECCEEEEEE
Confidence 99999986 43 46 99999999999998754211 112467899988752 17899999999999
Q ss_pred EeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeec
Q 013368 297 DIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFP 374 (444)
Q Consensus 297 d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~ 374 (444)
|+|+.|.++.+++.++|++.++.. ..+++++++. ....|+ ...++++++.+.+++++.+.+. ....++
T Consensus 280 diR~~p~~~~e~v~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~d~~lv~~l~~a~~~~g~~~-~~~~~~ 349 (401)
T TIGR01879 280 DLRHTDAAVLRDFTQQLENDIKAISDERDIGIDIER------WMDEEP---VPCSEELVAALTELCERLGYNA-RVMVSG 349 (401)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHHHHcCceEEEEE------eecCCC---cCCCHHHHHHHHHHHHHcCCCc-cccccc
Confidence 999999999999999999888642 2456666653 122332 4568999999999999876544 334567
Q ss_pred CCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 375 ASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 375 g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
|+||+++|+..++|++.|||+... .+|++||+++++++.+++++|..++..+
T Consensus 350 ggtDa~~~~~~~~~~v~fgPg~~~--~aH~~dE~v~~e~l~~~~~vl~~~i~~l 401 (401)
T TIGR01879 350 AGHDAQILAPIVPIGMIFIPSING--ISHNPAEWSNITDCAEGAKVLYLMVYQL 401 (401)
T ss_pred hHHHHHHHHhhCCEEEEEecCCCC--CcCCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 899999999988899999999764 6899999999999999999999998753
|
Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546. |
| >COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=321.80 Aligned_cols=368 Identities=22% Similarity=0.241 Sum_probs=298.8
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
...++++++.|+|+++|+.+ .+|.+++++|.++|+++|+++. +...+...+++.+.|.+++ |+|+|+++||.+|.
T Consensus 9 ~~~~~l~~~rr~lH~~PEL~--f~E~~Ta~~i~~~L~~~g~~~~--~~~~~~TGvva~~~~g~~g-~tIalRAD~DALPi 83 (392)
T COG1473 9 ELKDELIEWRRDLHEHPELG--FEEYRTAAYIAEKLEELGFEVV--EVGGGKTGVVATLKGGKPG-PTIALRADMDALPI 83 (392)
T ss_pred hhhHHHHHHHHHHhhCCccc--hhHHHHHHHHHHHHHHcCCeeE--eccCCceEEEEEEcCCCCC-CEEEEEeecccCcc
Confidence 56688999999999999996 7999999999999999999933 3222356899999866554 69999999999999
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
.++ +.-||.++. .|++|+||+. ++++++|.+++.|++...+++++|+|+|+|+||.++ |++.|++++.+++
T Consensus 84 ~E~--t~~~~~S~~--~G~mHACGHD---~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~--Ga~~mi~~G~~~~ 154 (392)
T COG1473 84 QEE--TGLPFASKN--PGVMHACGHD---GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG--GAKAMIEDGVFDD 154 (392)
T ss_pred ccc--cCCCcccCC--CCCcccCCch---HHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc--cHHHHHhcCCccc
Confidence 763 457998865 7899999975 789999999999999866799999999999999885 9999999998888
Q ss_pred -CceEEEeccCCCCcCCcceeeec--ccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchh
Q 013368 185 -LNVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLK 260 (444)
Q Consensus 185 -~d~~~~~~~g~~~p~~~~~i~~~--~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~ 260 (444)
+|.++.++..+..|.+...+..| ..+...++++++|+++|++.|+.+ ||+.+++.++..|+.+.....+
T Consensus 155 ~vD~v~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~------- 227 (392)
T COG1473 155 FVDAVFGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVD------- 227 (392)
T ss_pred cccEEEEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccC-------
Confidence 89888888654325555555555 356788999999999999999999 9999999999999876543211
Q ss_pred ccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeecccccccC
Q 013368 261 AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRASLHDKF 338 (444)
Q Consensus 261 ~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~ 338 (444)
+-....++++.+++|. +.|+||+.+++.+++|+.+.+..+.+.++|+++++. ...++++++... .
T Consensus 228 -p~~~~vv~vg~~~aG~------a~NVIpd~A~l~gtvR~~~~~~~~~~~~~i~~ia~g~a~~~g~~~ei~~~------~ 294 (392)
T COG1473 228 -PLDSAVVTVGKIEAGT------AANVIPDSAELEGTIRTFSDEVREKLEARIERIAKGIAAAYGAEAEIDYE------R 294 (392)
T ss_pred -CccCeEEEEEEecCCC------cCCcCCCeeEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEec------C
Confidence 1123578999999998 889999999999999999999999999999988874 356777777742 2
Q ss_pred CCCCccccCCCChHHHHHHHHHHHhcCCC---CCce-eecCCcchHHHHhcCCCeEEEccCCCC----CCCCCCCCcccc
Q 013368 339 GRPILTATDSSNPWWNLLEEAVRKANGKL---GKPE-IFPASTDARYFRERGLPAIGFSPMANT----PILLHDHNEFLN 410 (444)
Q Consensus 339 ~~p~~~~~~~~~~l~~~~~~a~~~~~~~~---~~~~-~~~g~tD~~~~~~~gip~v~~gp~~~~----~~~~H~~~E~i~ 410 (444)
.. +.+.+|..+++.+++++++..+.. .... .+.|++|+++|.+. +|...|-.|... ....|++...++
T Consensus 295 ~~---p~~~Nd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsEDf~~~~~~-~Pg~~~~lG~~~~~~~~~~~H~p~~~~d 370 (392)
T COG1473 295 GY---PPVVNDPALTDLLAEAAEEVGGEEVVVVELPPSMAGSEDFGYYLEK-VPGAFFFLGTGSADGGTYPLHHPKFDFD 370 (392)
T ss_pred CC---CCccCCHHHHHHHHHHHHHhccccceecccCCCCCccchHHHHHHh-CCeeEEEeecCcCCCCcccccCCcCCCC
Confidence 23 347889999999999999998632 1222 23499999999998 886544344222 124899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 013368 411 QAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 411 ~~~l~~~~~~~~~~l~~l~~ 430 (444)
.+.+..+++++..+...+..
T Consensus 371 e~~l~~g~~~~~~~~~~~~~ 390 (392)
T COG1473 371 EAALATGVKLLAALALLYLA 390 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988754
|
|
| >KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=306.43 Aligned_cols=397 Identities=21% Similarity=0.323 Sum_probs=302.3
Q ss_pred HhcCCCCChhHHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeecC----------CCCeEEEEec
Q 013368 19 IFSSPAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAK----------NKPLILLKWP 84 (444)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~~----------~~~nl~~~~~ 84 (444)
.|..++.+.+++++.|+++++|+|+|..+ ...++++|++++|.++|-.++..+... ..|-+++++
T Consensus 7 ~fq~id~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl~~~- 85 (473)
T KOG2276|consen 7 VFQSIDLNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVLGVL- 85 (473)
T ss_pred HHHHhhccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhhhcc-
Confidence 55678899999999999999999998543 356889999999999997777655431 112344443
Q ss_pred CCCCCCCcEEEEeecccccCC-CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeec
Q 013368 85 GSNPQLPSILLNSHTDVVPSE-PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (444)
Q Consensus 85 g~~~~~~~i~l~~H~Dtvp~~-~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (444)
|++|++++++++||+|++|.. +++|..+||+.+++ +|++||||+.|+||++++++.|++++++.++.++.||+++|..
T Consensus 86 Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~-~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~Eg 164 (473)
T KOG2276|consen 86 GSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTED-DGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFEG 164 (473)
T ss_pred cCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEE-CCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEEe
Confidence 888889999999999999998 59999999999998 9999999999999999999999999999999999999999999
Q ss_pred CcccCccccHHHHHhcc---ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEee--cCCccCCCCCC---CHHH
Q 013368 164 DEEIGGHDGAEKFADSH---VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARG--APGHGAKLYDN---SAME 235 (444)
Q Consensus 164 ~EE~g~~~G~~~~~~~~---~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G--~~~Hs~~p~~g---nai~ 235 (444)
-||.|+ .|...++++. .+..+|+.++.| ..+.-+..+-+.+|.||...|.++|.| +-.|||.. +| -|+.
T Consensus 165 mEEsgS-~~L~~l~~~~kD~~~~~vD~vciSd-nyWlg~kkPcltyGlRG~~yf~i~v~g~~~DlHSGvf-GG~~hE~m~ 241 (473)
T KOG2276|consen 165 MEESGS-EGLDELIEKEKDKFFKDVDFVCISD-NYWLGTKKPCLTYGLRGVIYFQIEVEGPSKDLHSGVF-GGVVHEAMN 241 (473)
T ss_pred chhccC-ccHHHHHHHHhhhhhccCCEEEeeC-ceeccCCCcccccccccceeEEEEEeecccccccccc-cchhHHHHH
Confidence 999997 6888888753 456678655544 333333345678899999999999999 67899973 33 7888
Q ss_pred HHHHHHHHHHhchhh----------------h---hH-------HHHhc--------------hhccCCceeeeeeeecc
Q 013368 236 NLFKSIESVRRFRAS----------------Q---FD-------LVKAG--------------LKAEGEVVSVNMAFLKA 275 (444)
Q Consensus 236 ~~~~~i~~l~~l~~~----------------~---~~-------~~~~~--------------~~~~~~~~t~~~~~i~~ 275 (444)
.+..++..|.+...+ + ++ .+... +......+++.+..|.|
T Consensus 242 dL~~~ms~Lv~~~~~Ilipgiy~~vaplteeE~~~y~~I~f~~~e~~~~tg~~~l~~~~k~~~l~~rWryPSLsihgIeG 321 (473)
T KOG2276|consen 242 DLVLVMSSLVDIQGRILIPGIYEDVAPLTEEEDSIYDDIDFDVEEFKEATGSQMLPTDDKKRILMHRWRYPSLSIHGIEG 321 (473)
T ss_pred HHHHHHHHhcCcCCcEeccchhhhccCCChHHHhhhhcceeeHhhhhccccccccccCchHHHhhhhcccCccceecccc
Confidence 888888887653211 1 00 00000 11224567888888887
Q ss_pred CCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc----CCCCceEEEeecccccccCCCCCccccCCCCh
Q 013368 276 GTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP----ASRNMTFEFKQRASLHDKFGRPILTATDSSNP 351 (444)
Q Consensus 276 G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 351 (444)
.- ++.++..+||.++.-.|.+|++|.++.+.+.+.+.+.++. ....=++++... ....|.. .+++++
T Consensus 322 aF--s~pG~kTVIP~kVigkfSiRlVP~md~e~verlv~~yl~~~f~~~nS~N~l~~~~~-----~~~~~Wv--~d~~~~ 392 (473)
T KOG2276|consen 322 AF--SGPGAKTVIPAKVVGKFSIRLVPNMDPEQVERLVTRYLEKVFAELNSPNKLKVSMG-----HAGAPWV--SDPDDP 392 (473)
T ss_pred ee--eCCCceEEeehhheeeeEEEecCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEeec-----CCCCcee--cCCCch
Confidence 54 3445888999999999999999999999998888777652 111223333331 2455554 678999
Q ss_pred HHHHHHHHHHHhcCCCCCceeecCCc-chHHHHhc-CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 352 WWNLLEEAVRKANGKLGKPEIFPAST-DARYFRER-GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 352 l~~~~~~a~~~~~~~~~~~~~~~g~t-D~~~~~~~-gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
-+.++++|++.+.+-.+.....+|+- -..-|++. |-+++...-|.. ...+|+.||++++..+.+|.++++.++.+++
T Consensus 393 ~y~a~krA~~~v~gvePd~~ReGgSIPvt~tfQ~~~~~~V~llP~G~~-dD~aHsqNEkl~i~N~~~G~k~l~ay~~el~ 471 (473)
T KOG2276|consen 393 HYLALKRAIETVYGVEPDFTREGGSIPVTLTFQDITGKSVLLLPYGAS-DDGAHSQNEKLNITNYVEGTKVLAAYISELA 471 (473)
T ss_pred hHHHHHHHHHHhhCCCCCccccCCccceehHHHHHhCCCeEEeccccc-ccchhhhcccccHHHHhhhHHHHHHHHHHHh
Confidence 99999999999987653333333332 34456665 788876644422 2479999999999999999999999999986
Q ss_pred c
Q 013368 430 S 430 (444)
Q Consensus 430 ~ 430 (444)
+
T Consensus 472 ~ 472 (473)
T KOG2276|consen 472 Q 472 (473)
T ss_pred c
Confidence 4
|
|
| >TIGR03176 AllC allantoate amidohydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=325.39 Aligned_cols=347 Identities=14% Similarity=0.169 Sum_probs=266.8
Q ss_pred hHHHHHHHhhhcccC-CC-------CCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeec
Q 013368 28 DSIIERFRAYLQIDT-SQ-------PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHT 99 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s-~s-------~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~ 99 (444)
.++++.+.+|-+|.+ .. .+..+.++.+|+++||+++|++++... ..|++++++|..++.|.|++.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~----~gN~~~~~~g~~~~~~~i~~gsHl 78 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDD----VGNLYGRLVGTEFPEETILTGSHI 78 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcC----CCcEEEEecCCCCCCCeEEEeccc
Confidence 467777778877732 21 245688999999999999999987543 349999999988778999999999
Q ss_pred ccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----ccccHHH
Q 013368 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAEK 175 (444)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~~ 175 (444)
||||.+ |.-|.+.|+++.|++++.|++++..++++|.++++.+||.+ ++.|++.
T Consensus 79 Dtv~~g----------------------G~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~ 136 (406)
T TIGR03176 79 DTVVNG----------------------GNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKN 136 (406)
T ss_pred cCCCCC----------------------CccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHH
Confidence 999986 33456669999999999999998899999999999999965 2468887
Q ss_pred HHhcc------ccc--------------------------cCceE--EEeccCCCC--cCCcceeeecccccEEEEEEEe
Q 013368 176 FADSH------VFN--------------------------SLNVG--IVLDEGLAS--TTEDYRAFYAERCPWWLVIKAR 219 (444)
Q Consensus 176 ~~~~~------~~~--------------------------~~d~~--~~~~~g~~~--p~~~~~i~~~~~G~~~~~i~v~ 219 (444)
+...- .+. .++.. +-++.|+.. .....+++.+.+|..+++|+++
T Consensus 137 ~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~G~~~~~v~v~ 216 (406)
T TIGR03176 137 IFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIVGQRRYTVNLK 216 (406)
T ss_pred HhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEeecccceEEEEEEE
Confidence 76310 000 01111 222223321 2224688999999999999999
Q ss_pred ecCCccCCCC-C-C-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeecc-CCCCCCCcccccccCceEEE
Q 013368 220 GAPGHGAKLY-D-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPNGFVMNLQPSEAEAG 295 (444)
Q Consensus 220 G~~~Hs~~p~-~-g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~-G~~~~~~~~~n~ip~~~~~~ 295 (444)
|+++|+|.|+ . + ||+.++++++..|..+... ....++++++.+++ |. ..|+||++|+++
T Consensus 217 GkaaHag~~p~~~r~dAi~aaa~~i~~l~~~~~~-----------~~~~~~~tvG~I~~gg~------~~NvIP~~a~~~ 279 (406)
T TIGR03176 217 GEANHAGTTPMSYRRDTVYAFSRICTQSIERAKE-----------IGDPLVLTFGKVEPVPN------TVNVVPGETTFT 279 (406)
T ss_pred EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----------cCCCcEEEEEEEEEcCC------ceEEECCeEEEE
Confidence 9999999854 3 3 9999999999998764321 11235789999985 44 899999999999
Q ss_pred EEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceee
Q 013368 296 FDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIF 373 (444)
Q Consensus 296 ~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~ 373 (444)
+|+|+.+.++.+.+.++|++.++.. ..++++++... ....| ...|+++++.+.+++++.++.. ....+
T Consensus 280 ~DiR~~~~~~~e~v~~~i~~~i~~ia~~~g~~~ei~~~-----~~~~p----~~~d~~lv~~l~~a~~~~~~~~-~~~~s 349 (406)
T TIGR03176 280 IDCRHTDAAVLRNFTKELENDMKAIADEMDITIDIDLW-----MDEAP----VPMNKEIVAIIEQLAKAEKLNY-RLMHS 349 (406)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEE-----ecCCC----CCCCHHHHHHHHHHHHHcCCCc-eecCc
Confidence 9999999999999988888877642 34566666531 11222 3457899999999999987654 33456
Q ss_pred cCCcchHHHHhcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 374 PASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 374 ~g~tD~~~~~~~gip~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+|++|+++|++. +|+ +.|||+..+ .+|++||+++++++.+++++|..++..+++
T Consensus 350 ggg~Da~~~~~~-vP~~~ifgp~~~g--~~H~p~E~v~~e~l~~g~~vl~~~l~~l~~ 404 (406)
T TIGR03176 350 GAGHDAQIFAPR-VPTAMIFVPSIGG--ISHNPAERTNIEDLVEGVKTLADMLYELAY 404 (406)
T ss_pred ccHHHHHHHHHH-CCEEEEEEeCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 689999999987 886 679998654 689999999999999999999999999876
|
This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. |
| >PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=327.53 Aligned_cols=356 Identities=16% Similarity=0.152 Sum_probs=267.9
Q ss_pred hcCCCCChhHHHHHHHhhhcccCCC-----------CCCChhHHHHHHHHHHHHCCC-ceEEEeecCCCCeEEEEecCCC
Q 013368 20 FSSPAKSDDSIIERFRAYLQIDTSQ-----------PNPDYTNASKFILAQAEALSL-ESQTLEFAKNKPLILLKWPGSN 87 (444)
Q Consensus 20 ~~~~~~~~~~~~~~l~~l~~i~s~s-----------~~~~e~~~~~~l~~~l~~~G~-~~~~~~~~~~~~nl~~~~~g~~ 87 (444)
+.......+++++.+.+|-+|+... .+..+.++++|+.+||+++|+ +++.. ...|++++++|.+
T Consensus 173 ~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D----~~GNl~~~~~g~~ 248 (591)
T PRK13590 173 FGAEPVLGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHID----AVGNVVGRYKGST 248 (591)
T ss_pred hCCCchHHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeEC----CCCCEEEEecCCC
Confidence 4445566788999999999986522 134567999999999999999 76643 3459999999877
Q ss_pred CCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 88 ~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
++.|.|++.+|+||||.+ |+ .|+++|++++|++++.|++.+..++++|.|+++++||.
T Consensus 249 ~~~~~v~~gsHlDTV~~g----------------G~------~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 249 PQAKRLLTGSHYDTVRNG----------------GK------YDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEG 306 (591)
T ss_pred CCCCeEEEecccccCCCC----------------CC------cccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCcc
Confidence 666899999999999864 33 47778999999999999999988889999999999996
Q ss_pred C----ccccHHHHH--------hc----cc----------c------------ccCceEEE--eccCCC--CcCCcceee
Q 013368 168 G----GHDGAEKFA--------DS----HV----------F------------NSLNVGIV--LDEGLA--STTEDYRAF 205 (444)
Q Consensus 168 g----~~~G~~~~~--------~~----~~----------~------------~~~d~~~~--~~~g~~--~p~~~~~i~ 205 (444)
+ ++.|++.+. +. +. + ..+..++- ++.|+. ......+++
T Consensus 307 ~rF~~~~~GS~~~~G~~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV 386 (591)
T PRK13590 307 QRYKATFLGSGALIGDFDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIV 386 (591)
T ss_pred ccCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEE
Confidence 3 246777532 10 00 0 00011111 222211 001135799
Q ss_pred ecccccEEEEEEEeecCCccCC-CCC-C-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeecc-CCCCCC
Q 013368 206 YAERCPWWLVIKARGAPGHGAK-LYD-N-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKA-GTPSPN 281 (444)
Q Consensus 206 ~~~~G~~~~~i~v~G~~~Hs~~-p~~-g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~-G~~~~~ 281 (444)
.+.+|..+++|+++|+++|+|. |.. + ||+..+++++..++.+... ...++++++.+.. |.
T Consensus 387 ~~~~G~~~~~v~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~------------~~~~v~tVG~i~~~Gg---- 450 (591)
T PRK13590 387 TSINGSVRYVGEMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ------------DGDSVGTVGMLEVPGG---- 450 (591)
T ss_pred eeeeccEEEEEEEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc------------CCCcEEEEEEEEECCC----
Confidence 9999999999999999999997 543 4 9999999999998764210 1123567777763 32
Q ss_pred CcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHH
Q 013368 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEA 359 (444)
Q Consensus 282 ~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a 359 (444)
..|+||++|++++|+|+.+.++.+.+.++|++.++.. ..+++++++.. ...| ++..++++++.+.++
T Consensus 451 --~~NVIP~~a~~~iDiR~~~~e~~e~v~~~i~~~i~~ia~~~g~~vei~~~------~~~~---~~~~d~~lv~~~~~a 519 (591)
T PRK13590 451 --SINVVPGRCRFSLDIRAPTDAQRDAMVADVLAELEAICERRGLRYTLEET------MRAA---AAPSAPAWQQRWEAA 519 (591)
T ss_pred --CCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEEe------ecCC---CcCCCHHHHHHHHHH
Confidence 7899999999999999999999999988888777642 35667776641 2222 356688999999999
Q ss_pred HHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 360 VRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+++.+... ....++|++|+++|+..+++++.|||+... ..+|+++|+++++++.+++++|..++..++.
T Consensus 520 a~~~G~~~-~~~~sggg~Da~~~a~~~p~~mifgpg~~~-g~sH~p~E~v~~edL~~g~~vl~~ll~~l~~ 588 (591)
T PRK13590 520 VAALGLPL-FRMPSGAGHDAMKLHEIMPQAMLFVRGENA-GISHNPLESSTADDMQLAVQAFQHLLDQLAA 588 (591)
T ss_pred HHHcCCCc-ccCCcchhHHHHHHHHHCCEEEEEEeeCCC-CCCCCCccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 98876554 334567899999999987778999998531 2689999999999999999999999988853
|
|
| >PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=318.40 Aligned_cols=359 Identities=13% Similarity=0.094 Sum_probs=269.5
Q ss_pred HhcCCCCChhHHHHHHHhhhcccCC---C--------CCCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCC
Q 013368 19 IFSSPAKSDDSIIERFRAYLQIDTS---Q--------PNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGS 86 (444)
Q Consensus 19 ~~~~~~~~~~~~~~~l~~l~~i~s~---s--------~~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~ 86 (444)
.....+...+++++.+.+|.+|+.+ . .+..+.++.+|+.+||+++|++ ++.++ ..||+++++|.
T Consensus 172 l~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~----~gNv~~~~~g~ 247 (591)
T PRK13799 172 KFGYTPAIGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDA----VGNVVGRYKAA 247 (591)
T ss_pred HhCCChhHHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECC----CCCEEEEcCCC
Confidence 3445666778999999999999631 1 1334678999999999999998 87543 35999999887
Q ss_pred CCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcc
Q 013368 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (444)
Q Consensus 87 ~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (444)
+++.|.|++.+|+||||. +|+++|+ .|+++.|++++.|++.+.+++++|.|+++.+||
T Consensus 248 ~~~~p~v~~gSHlDTV~~----------------gG~~DG~------~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EE 305 (591)
T PRK13799 248 DDDAKTLITGSHYDTVRN----------------GGKYDGR------EGIFLAIACVKELHEQGERLPFHFEVIAFAEEE 305 (591)
T ss_pred CCCCCeEEEeccccccCC----------------CCccccH------HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCC
Confidence 666799999999999985 6666665 599999999999999999999999999999999
Q ss_pred cC----ccccHHHHHh------------ccc-----cccCce-----------------E--EEeccCCC--CcCCccee
Q 013368 167 IG----GHDGAEKFAD------------SHV-----FNSLNV-----------------G--IVLDEGLA--STTEDYRA 204 (444)
Q Consensus 167 ~g----~~~G~~~~~~------------~~~-----~~~~d~-----------------~--~~~~~g~~--~p~~~~~i 204 (444)
.. ++.|++.+.- ++. ++..++ . +-++.|+. ......++
T Consensus 306 g~rF~~~~~GS~~~~G~~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igv 385 (591)
T PRK13799 306 GQRFKATFLGSGALIGDFNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGI 385 (591)
T ss_pred ccCCCccccchHHHhCCChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEE
Confidence 62 3568888761 111 000010 0 11111111 00123579
Q ss_pred eecccccEEEEEEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCC
Q 013368 205 FYAERCPWWLVIKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPN 281 (444)
Q Consensus 205 ~~~~~G~~~~~i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~ 281 (444)
+.+.+|..+++|+++|+++|+|. |. .+ ||+.++++++..++.+... ......+++++.++++.
T Consensus 386 V~g~~G~~~~~Itv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~----------~~~~~~v~tVG~I~~~~---- 451 (591)
T PRK13799 386 VTSIAGSARYICEFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQ----------DQHASLVATMGQLNVPS---- 451 (591)
T ss_pred EeeeccceEEEEEEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHh----------cCCCCcEEEEEEEEecC----
Confidence 99999999999999999999997 43 35 9999999999999764221 01122467788887542
Q ss_pred CcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHH
Q 013368 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEA 359 (444)
Q Consensus 282 ~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a 359 (444)
+..|+||++|++++|+|+.+.++.+.+.++|++.++.. ..+++++++. ....| ++..++++++.+.++
T Consensus 452 -ga~NvIP~~a~~~~DiR~~~~e~~e~l~~~i~~~i~~ia~~~g~~~ei~~------~~~~~---~~~~d~~lv~~~~~a 521 (591)
T PRK13799 452 -GSTNVIPGRCQFSLDIRAATDEIRDAAVADILAEIAAIAARRGIEYKAEL------AMKAA---AAPCAPELMKQLEAA 521 (591)
T ss_pred -CCCceECCEEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE------EecCC---CcCCCHHHHHHHHHH
Confidence 17899999999999999999999999888877766532 2455665553 12222 256678999999999
Q ss_pred HHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 360 VRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 360 ~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
.++.+... ....+++++|+++|++.+++++.|+|+... ..+|+++|+++++++.+++++|..++..++
T Consensus 522 ~~~~G~~~-~~~~sgag~Da~~~a~~~p~amif~~~g~~-g~sHsp~E~v~~edL~~g~~vl~~~l~~l~ 589 (591)
T PRK13799 522 TDAAGVPL-FELASGAGHDAMKIAEIMDQAMLFTRCGNA-GISHNPLESMTADDMELSADAFLDFLNNFA 589 (591)
T ss_pred HHHcCCCc-eecCcchHHHHHHHHhhCCEEEEEEecCCC-CCCCCccccCCHHHHHHHHHHHHHHHHHHh
Confidence 88766544 334557899999999998889999886431 158999999999999999999999998875
|
|
| >PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=210.91 Aligned_cols=183 Identities=31% Similarity=0.533 Sum_probs=150.7
Q ss_pred EEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccH
Q 013368 94 LLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (444)
Q Consensus 94 ~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (444)
+|++||||||. .+.|+++||++..+ +|++||||++|+|+++++++.|++.|++.+.+++++|.|+|+++||.|+..|+
T Consensus 1 ll~~H~Dtv~~-~~~w~~~pf~~~~~-~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~ 78 (189)
T PF01546_consen 1 LLYAHMDTVPG-PEGWKHDPFELSIE-DGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGA 78 (189)
T ss_dssp EEEEES-BCST-GGGSSSSTTSEEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHH
T ss_pred CccccccccCC-cCcCCCCCcccEEE-CCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchh
Confidence 68999999994 78999999999998 99999999999999999999999999988889999999999999999974499
Q ss_pred HHHHhcc--ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhh
Q 013368 174 EKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQ 251 (444)
Q Consensus 174 ~~~~~~~--~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~ 251 (444)
+.+++++ .....|+.++.+ |+......
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~e-----~~~~~~~~---------------------------------------------- 107 (189)
T PF01546_consen 79 KHLLEEGAFFGLHPDYVIIGE-----PTGKGGVG---------------------------------------------- 107 (189)
T ss_dssp HHHHHHCEEEEEEESEEEECE-----CETTSEEE----------------------------------------------
T ss_pred hhhhhhccccccccccccccc-----cccccccc----------------------------------------------
Confidence 9999873 112245555443 32211111
Q ss_pred hHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeec
Q 013368 252 FDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQR 331 (444)
Q Consensus 252 ~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 331 (444)
T Consensus 108 -------------------------------------------------------------------------------- 107 (189)
T PF01546_consen 108 -------------------------------------------------------------------------------- 107 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHH---hcCCCeEEEccCCCCCCCCCCCCcc
Q 013368 332 ASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFR---ERGLPAIGFSPMANTPILLHDHNEF 408 (444)
Q Consensus 332 ~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~---~~gip~v~~gp~~~~~~~~H~~~E~ 408 (444)
...+.++++.+.+++++.++....+...+|++|++++. ..++|++.|||+.. .+|++||+
T Consensus 108 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tD~~~~~~~~~~~~~~i~~G~~~~---~~H~~~E~ 170 (189)
T PF01546_consen 108 --------------SDNDPPLVQALQAAAQEVGGEPPEPVASGGGTDAGFLAEVKGLGIPAIGFGPGGS---NAHTPDEY 170 (189)
T ss_dssp --------------HCTCHHHHHHHHHHHHHTTSSEEEEEEESSSSTHHHHHCHHHTTEEEEEEESCEE---STTSTT-E
T ss_pred --------------ccccHHHHHHHHHHHHHHhhccccccceeccccchhhhhhhccccceeeeCCCCC---CCCCCCcE
Confidence 13356799999999999987333667888999999999 56999999999983 69999999
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 013368 409 LNQAEYLKGIDIYESIIK 426 (444)
Q Consensus 409 i~~~~l~~~~~~~~~~l~ 426 (444)
++++++.+++++|++++.
T Consensus 171 i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 171 IDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHh
Confidence 999999999999999986
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B .... |
| >COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=211.72 Aligned_cols=364 Identities=19% Similarity=0.161 Sum_probs=267.2
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceE-EEeec----CCC--Ce-EEEEecCCCCCCCcEEEEe
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ-TLEFA----KNK--PL-ILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~-~~~~~----~~~--~n-l~~~~~g~~~~~~~i~l~~ 97 (444)
..+++++.+.++++||+.| .++.+++.++.+|++.+|+.++ ..... ... .| +.+++++..+--|.+-+.+
T Consensus 3 ~~~~l~~~F~~~~kI~~~S--~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~s 80 (414)
T COG2195 3 KMERLLDRFLELVKIPTQS--KHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFIS 80 (414)
T ss_pred chHHHHHHHHHHeeCCCCC--CCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccc
Confidence 4678999999999999996 7888999999999999999883 11111 011 22 5566777654457899999
Q ss_pred ecccccCC-----CCCC---------------------ccCCCcceecCCCeEEecCc----ccchhHHHHHHHHHHHHH
Q 013368 98 HTDVVPSE-----PSKW---------------------SHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLK 147 (444)
Q Consensus 98 H~Dtvp~~-----~~~W---------------------~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~ 147 (444)
|+||+|-. ...| .+.|......-+..+.-.|+ +|+|+|++.++.++..+.
T Consensus 81 h~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~ 160 (414)
T COG2195 81 HHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLR 160 (414)
T ss_pred cccccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHh
Confidence 99999631 1223 13444333220123334455 799999999999999999
Q ss_pred HcC-CCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC
Q 013368 148 ASG-FQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA 226 (444)
Q Consensus 148 ~~~-~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~ 226 (444)
+.. .-+.++|.+.|+++||.|+ +|+..+.-. ++. +++++.+|+| + .+.+.+...+...+++++.|+.+|++
T Consensus 161 ~~~~~i~h~~i~~g~s~~Ee~g~-rg~~~~~~a-~f~-a~~ay~iDGg---~--~g~i~~ea~~~~~~~~~~~g~~~h~~ 232 (414)
T COG2195 161 EKHPEIPHGGIRGGFSPDEEIGG-RGAANKDVA-RFL-ADFAYTLDGG---P--VGEIPREAFNAAAVRATIVGPNVHPG 232 (414)
T ss_pred hcCccccccCeEEEecchHHhhh-hhhhhccHH-hhh-cceeEecCCC---c--cCeeeeeccchheeeeeeeccCcCcc
Confidence 662 3467999999999999986 788876654 343 5889999943 2 24788899999999999999999998
Q ss_pred CCC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCC
Q 013368 227 KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304 (444)
Q Consensus 227 ~p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~ 304 (444)
... .. ||+..+.++...+..-.. ...++...+..+.++ ..|.|.+.+.....+|...+.
T Consensus 233 ~a~~~~i~a~~~a~e~~~~~~~~~~-------------~e~t~~~~Gv~~~~~------~~~~V~~~s~~~~~iR~~d~~ 293 (414)
T COG2195 233 SAKGKMINALLLAAEFILELPLEEV-------------PELTEGPEGVYHLGD------STNSVEETSLNLAIIRDFDNL 293 (414)
T ss_pred chHHHHhhHHHhhhhhhhcCCcccc-------------cccccccceEEeccc------cccchhhhhhhhhhhhhcchh
Confidence 743 23 777766655554432110 123556677777776 888999999999999999987
Q ss_pred CHHHHHHHHHHHhcc----CCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchH
Q 013368 305 DAESLERRIVEEWAP----ASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR 380 (444)
Q Consensus 305 ~~~~i~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~ 380 (444)
..+.....+++.+.. ......++++. ...+|.+ ...+++.+++.+++++++++.++ ......||+|++
T Consensus 294 ~~~s~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~Yp~~-~~~~~~~iv~~a~~a~~~l~~~p-~v~~i~gGtd~~ 365 (414)
T COG2195 294 LFRARKDSMKDVVEEMAASLGKLAGAELEV------KDSYPGW-KIKPDSPLVDLAKKAYKELGIKP-KVKPIHGGTDGG 365 (414)
T ss_pred HHHHhHHHHHHHHHHHHHHhhhccceEEEE------eccccCc-CCCCCchHHHHHHHHHHHhCCCc-eEEEeecccchh
Confidence 777777777766652 12123444443 1456665 47788999999999999999984 777888999999
Q ss_pred HHHhcCCCeE--EEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 381 YFRERGLPAI--GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 381 ~~~~~gip~v--~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
.++..|+|+. ..|| .. +.|+++|+++++++.+.++++..++..+..
T Consensus 366 ~is~~g~p~~~i~~Gp-~~---n~Hs~~E~v~I~s~ek~~~~l~~l~~~~~~ 413 (414)
T COG2195 366 VLSFKGLPTPNISTGP-GE---NPHSPDEFVSIESMEKAVQVLVELLKLAAA 413 (414)
T ss_pred hhhccCCCCceEeccc-cc---CCCCccceeehHHHHHHHHHHHHHHHHhhc
Confidence 9999988865 5566 44 599999999999999999999999887653
|
|
| >COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=180.10 Aligned_cols=274 Identities=17% Similarity=0.155 Sum_probs=191.7
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCC-c-----eEEE--eecC-CCCeEEEEecCCCCCCCcEEEEe
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSL-E-----SQTL--EFAK-NKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~-~-----~~~~--~~~~-~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
.+++.++..+|++.||++++.+|...+++|...|+++.. + +..+ +++. ++.||+|-++|. .++++|++.|
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~-~~k~tvvl~g 85 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGG-TSKRTVVLHG 85 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecC-CCCceEEEee
Confidence 689999999999999999999999999999998887742 1 1111 2111 678999999984 3568999999
Q ss_pred ecccccCCC-CCCccCCCcc-----------e---------ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcce
Q 013368 98 HTDVVPSEP-SKWSHHPFGA-----------H---------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (444)
Q Consensus 98 H~Dtvp~~~-~~W~~~Pf~~-----------~---------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (444)
|+|||..++ ....+-.|.+ . .++|+|++|||+.|||+|+|+.|++++.+.+++ ...||
T Consensus 86 H~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~~-~~~GN 164 (553)
T COG4187 86 HFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAART-DRQGN 164 (553)
T ss_pred ccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhCC-CCCCc
Confidence 999999974 2222223332 0 115899999999999999999999999999874 68999
Q ss_pred EEEEeecCcccCccccHHHHHhcc-cc-c--cCce--EEEeccCCC-CcCC-cceeeecccccEEEEEEEeecCCccCCC
Q 013368 157 VYLSFVPDEEIGGHDGAEKFADSH-VF-N--SLNV--GIVLDEGLA-STTE-DYRAFYAERCPWWLVIKARGAPGHGAKL 228 (444)
Q Consensus 157 i~~~~~~~EE~g~~~G~~~~~~~~-~~-~--~~d~--~~~~~~g~~-~p~~-~~~i~~~~~G~~~~~i~v~G~~~Hs~~p 228 (444)
|.|+.+||||..+ .|++..+... .+ + ..++ +|..|.-.. .++. .-.++.|..|.+-.-.-|.|...|.|.|
T Consensus 165 lLf~a~pdEE~~s-~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvYtGtiGKLLp~f~vvG~etHvG~~ 243 (553)
T COG4187 165 LLFMAVPDEEVES-RGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVYTGTIGKLLPFFFVVGCETHVGYP 243 (553)
T ss_pred EEEEeccchhhhc-ccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEEeccchhhcceeEEEeeccccCCc
Confidence 9999999999986 7988877531 11 1 1222 344432111 1111 2368889999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccc-cccCceEEEEEeecCCCCCH
Q 013368 229 YDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMN-LQPSEAEAGFDIRVPPTTDA 306 (444)
Q Consensus 229 ~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n-~ip~~~~~~~d~R~~~~~~~ 306 (444)
..| ||-..+.+++.+|+ ++.+..+... +...+ +.+.+...+++- ..| ..|.++.+.|++=+.. .+.
T Consensus 244 f~Gvnan~maSei~~~le-~N~~l~dr~~-Ge~t~-PPs~L~qkDlKe--------~Y~VqTp~~a~~~fN~l~h~-~ta 311 (553)
T COG4187 244 FEGVNANFMASEITRRLE-LNADLADRVD-GEITP-PPSCLEQKDLKE--------SYNVQTPERAWLYFNWLYHS-RTA 311 (553)
T ss_pred ccCCCHHHHHHHHHHHhh-cChhhhhhhC-CeeCC-CcHhhhhhhhhh--------hccccCcchhhhhheehhhc-CCH
Confidence 999 99999999988885 3333222111 10000 111122333443 234 3689999999987775 456
Q ss_pred HHHHHHHHH
Q 013368 307 ESLERRIVE 315 (444)
Q Consensus 307 ~~i~~~i~~ 315 (444)
+++.+++++
T Consensus 312 ~~~~d~l~~ 320 (553)
T COG4187 312 KELFDRLKE 320 (553)
T ss_pred HHHHHHHHH
Confidence 666666543
|
|
| >TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-16 Score=150.19 Aligned_cols=134 Identities=21% Similarity=0.248 Sum_probs=106.7
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC--
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~-- 104 (444)
.++.+++|++|+++||+| +.|.++++++.++|+++|++++. + +..|+++.++|.. +.++|+|.||||+|+.
T Consensus 2 ~~~~~~lLk~Lv~~~s~S--G~E~~V~~~l~~~l~~~g~ev~~-D---~~Gnlia~~~g~~-~~~~v~l~aHmDevG~~V 74 (343)
T TIGR03106 2 TDYLTETLLALLAIPSPT--GFTDAVVRYVAERLEDLGIEYEL-T---RRGAIRATLPGRE-ATPARAVVTHLDTLGAMV 74 (343)
T ss_pred hHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEE-C---CCeEEEEEECCCC-CCCeEEEEEeecccccee
Confidence 467889999999999985 88999999999999999998874 3 4569999987743 2478999999999933
Q ss_pred --------------CC----------------CC---------Cc------------cCCCc---c--------------
Q 013368 105 --------------EP----------------SK---------WS------------HHPFG---A-------------- 116 (444)
Q Consensus 105 --------------~~----------------~~---------W~------------~~Pf~---~-------------- 116 (444)
++ .+ .. .++++ .
T Consensus 75 ~~I~~~G~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~ 154 (343)
T TIGR03106 75 RELKDNGRLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVR 154 (343)
T ss_pred eEECCCCeEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHH
Confidence 10 00 00 01111 0
Q ss_pred ----------------eecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc
Q 013368 117 ----------------HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (444)
Q Consensus 117 ----------------~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (444)
.. +++++|||+ .|||+++++++.+++.|.+.+.+++.+|+++|+.+||.|+
T Consensus 155 lGV~~Gd~v~~~~~~~~~-~~~~i~gr~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ 221 (343)
T TIGR03106 155 LGISVGDFVAFDPQPEFL-ANGFIVSRH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGS 221 (343)
T ss_pred cCCCCCCEEEECCccEEe-cCCEEEEEe-cccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCc
Confidence 02 388999998 9999999999999999998877788999999999999984
|
This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family. |
| >PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=155.12 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=97.3
Q ss_pred CCCChhHHHHHHHHHHHHCCCceEEEeec--------C--------CCCeEEEEecCCCCCCCcEEEEeecccccCCCCC
Q 013368 45 PNPDYTNASKFILAQAEALSLESQTLEFA--------K--------NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSK 108 (444)
Q Consensus 45 ~~~~e~~~~~~l~~~l~~~G~~~~~~~~~--------~--------~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~ 108 (444)
++++|.++++||+++|+++|++++.++.. . ...||++.++|.. .+.|+|.||+|||++...
T Consensus 50 gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~--~~~Ill~AH~DTV~p~~~- 126 (346)
T PRK10199 50 GSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKA--PQQIIIMAHLDTYAPQSD- 126 (346)
T ss_pred CCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCC--CCeEEEEEEcCcCCCCCC-
Confidence 46789999999999999999998754321 0 1257999998853 378999999999975421
Q ss_pred CccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 109 WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 109 W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
...++. .+.++++|++|||+|++++|++++.|++.+ ++.+|.|+++++||.|. .|+++++++
T Consensus 127 -~~~~~~-----~~g~~~~GA~DnasGvA~lLe~ar~l~~~~--~~~~I~fv~~~~EE~Gl-~GS~~~~~~ 188 (346)
T PRK10199 127 -ADVDAN-----LGGLTLQGMDDNAAGLGVMLELAERLKNVP--TEYGIRFVATSGEEEGK-LGAENLLKR 188 (346)
T ss_pred -CccccC-----CCCcccCCccccHHHHHHHHHHHHHHhhCC--CCCcEEEEEECCcccCc-HHHHHHHHh
Confidence 111222 233899999999999999999999998654 67899999999999984 899999986
|
|
| >PRK09961 exoaminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=152.04 Aligned_cols=257 Identities=16% Similarity=0.216 Sum_probs=175.6
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC-----
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE----- 105 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~----- 105 (444)
+++|++|+++||+| +.|.+++++++++|+++|++++. + +..|+++.+.|. +.|+|+|.||||+|+.-
T Consensus 3 ~~~L~~L~~~~s~s--G~E~~v~~~i~~~l~~~~~~v~~-D---~~Gnvi~~~~g~--~~~~v~l~aHmDevg~~V~~I~ 74 (344)
T PRK09961 3 LSLLKALSEADAIA--SSEQEVRQILLEEADRLQKEVRF-D---GLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSIS 74 (344)
T ss_pred HHHHHHHHhCCCCC--CChHHHHHHHHHHHHhhCCEEEE-C---CCCCEEEEEcCC--CCCEEEEEeccceeceEEEEEC
Confidence 46799999999996 89999999999999999998764 3 566999988663 23799999999999431
Q ss_pred --------C-CCCcc----------------------------CCCc-ceec----------------------------
Q 013368 106 --------P-SKWSH----------------------------HPFG-AHLD---------------------------- 119 (444)
Q Consensus 106 --------~-~~W~~----------------------------~Pf~-~~~~---------------------------- 119 (444)
+ .+|+. +++. ..++
T Consensus 75 ~~G~l~~~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~ 154 (344)
T PRK09961 75 REGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQV 154 (344)
T ss_pred CCceEEEEeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEE
Confidence 0 12211 1111 0000
Q ss_pred -CCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCc
Q 013368 120 -SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198 (444)
Q Consensus 120 -~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p 198 (444)
+++++.||. .|++.++++++++++.+++. +++.+++++|+..||.|. +|++..... ++ .|+++++|... .|
T Consensus 155 ~~~~~i~gka-lDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~-rGa~~aa~~--i~-pd~~I~vDv~~-~~ 226 (344)
T PRK09961 155 LPHQRVMGKA-FDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGL-RGGQTATRA--VS-PDVAIVLDTAC-WA 226 (344)
T ss_pred ecCCEEEEee-chhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccch-HHHHHHHhc--cC-CCEEEEEeccC-CC
Confidence 366777866 99999999999999999755 368999999999999995 799887652 43 47788887321 00
Q ss_pred CCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCC
Q 013368 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTP 278 (444)
Q Consensus 199 ~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~ 278 (444)
. .|... ......+..|
T Consensus 227 d---------------------------~~~~~-----------------------------------~~~~~~lg~G-- 242 (344)
T PRK09961 227 K---------------------------NFDYG-----------------------------------AANHRQIGNG-- 242 (344)
T ss_pred C---------------------------CCCCC-----------------------------------CCcccccCCC--
Confidence 0 00000 0000011111
Q ss_pred CCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHH
Q 013368 279 SPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEE 358 (444)
Q Consensus 279 ~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 358 (444)
..+.+.. . ....+..+++.+.+
T Consensus 243 ---------------------------------------------p~i~~~D--------~-----~~i~~~~l~~~l~~ 264 (344)
T PRK09961 243 ---------------------------------------------PMLVLSD--------K-----SLIAPPKLTAWIET 264 (344)
T ss_pred ---------------------------------------------ceEEEcc--------C-----CcCCCHHHHHHHHH
Confidence 1111110 0 02235567777777
Q ss_pred HHHHhcCCCCCceeecCCcchHHHHh--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 359 AVRKANGKLGKPEIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 359 a~~~~~~~~~~~~~~~g~tD~~~~~~--~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
++++.+.+.......+|+||++.+.. .|+|++.+||+.. ..|+++|+++++++..+++++..++..+
T Consensus 265 ~A~~~~Ip~Q~~~~~ggGTDa~~~~~~~~Giptv~ig~p~r---y~Hs~~E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 265 VAAEIGIPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATR---HGHCAASIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred HHHHcCCCcEEEecCCCcchHHHHHHhCCCCCEEEechhhh---cccChhheEEHHHHHHHHHHHHHHHHHc
Confidence 77777654411112346799997755 7999999999865 5999999999999999999999998765
|
|
| >TIGR03107 glu_aminopep glutamyl aminopeptidase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-15 Score=144.69 Aligned_cols=254 Identities=16% Similarity=0.186 Sum_probs=172.2
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC------
Q 013368 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE------ 105 (444)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~------ 105 (444)
++|++|+++|++| +.|.+++++++++|++++.+++.. ...|+++.+.|.+.+.|+|+|.||||+|+.-
T Consensus 2 ~~L~~L~~~~gpS--G~E~~v~~~i~~~l~~~~~~v~~D----~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~ 75 (350)
T TIGR03107 2 NKIKEVTELQGTS--GFEHPIRDYLRQDITPLVDQVETD----GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKP 75 (350)
T ss_pred hHHHHHHhCCCCC--CCcHHHHHHHHHHHHhhCCEEEEC----CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECC
Confidence 5699999999986 899999999999999999887643 3459999876631234799999999999211
Q ss_pred -------C-CCCc-------------c-C-C------------------------Cc-ce--------------------
Q 013368 106 -------P-SKWS-------------H-H-P------------------------FG-AH-------------------- 117 (444)
Q Consensus 106 -------~-~~W~-------------~-~-P------------------------f~-~~-------------------- 117 (444)
+ .+|+ . . + +. ..
T Consensus 76 ~G~l~~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd 155 (350)
T TIGR03107 76 DGTFRVVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGD 155 (350)
T ss_pred CceEEEEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCC
Confidence 0 1111 0 0 0 00 00
Q ss_pred ----------ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCce
Q 013368 118 ----------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (444)
Q Consensus 118 ----------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~ 187 (444)
..+++++.||. .|++.|+++++++++.|++. +++.+++++|+..||.| .+|++.... .++ .|+
T Consensus 156 ~v~~~~~~~~~~~~~~i~~ka-lDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG-~rGA~~aa~--~i~-pD~ 228 (350)
T TIGR03107 156 VIVPQTETILTANGKNVISKA-WDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVG-LRGAHVSTT--KFN-PDI 228 (350)
T ss_pred EEEECCCeEEEcCCCEEEEec-cccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcC-chhhhhHHh--hCC-CCE
Confidence 10245677777 89999999999999999765 36789999999999999 489997655 343 488
Q ss_pred EEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCcee
Q 013368 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (444)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t 267 (444)
+|++|.+... . .|.. ..
T Consensus 229 aI~vDv~~~~-d---------------------------~~~~-~~---------------------------------- 245 (350)
T TIGR03107 229 FFAVDCSPAG-D---------------------------IYGD-QG---------------------------------- 245 (350)
T ss_pred EEEEecCCcC-C---------------------------CCCC-Cc----------------------------------
Confidence 8998843210 0 0000 00
Q ss_pred eeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccC
Q 013368 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATD 347 (444)
Q Consensus 268 ~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 347 (444)
..+..| ..+.+.. . ...
T Consensus 246 ---~~lg~G-----------------------------------------------p~i~~~D-------~------~~i 262 (350)
T TIGR03107 246 ---GKLGEG-----------------------------------------------TLLRFFD-------P------GHI 262 (350)
T ss_pred ---cccCCC-----------------------------------------------ceEEEec-------C------CCC
Confidence 000001 1110000 0 012
Q ss_pred CCChHHHHHHHHHHHhcCCCCCceeecCCcchH--HHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR--YFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~--~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l 425 (444)
.+..+.+.+.+++++.+.+. .....+|+||++ ++...|+|++.+|.+.. ..|++.|.++++++...++++..++
T Consensus 263 ~~~~l~~~l~~~A~~~~I~~-Q~~~~~gGtDa~~~~~~~~Gvpt~~i~ip~R---y~Hs~~e~i~~~D~~~~~~Ll~~~i 338 (350)
T TIGR03107 263 MLPRMKDFLLTTAEEAGIKY-QYYVAKGGTDAGAAHLKNSGVPSTTIGVCAR---YIHSHQTLYSIDDFLAAQAFLQAIV 338 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCc-EEecCCCCchHHHHHHhCCCCcEEEEccCcc---cccChhheeeHHHHHHHHHHHHHHH
Confidence 24456666666666666554 223345789999 56678999999887655 4999999999999999999999999
Q ss_pred HHH
Q 013368 426 KAY 428 (444)
Q Consensus 426 ~~l 428 (444)
..+
T Consensus 339 ~~l 341 (350)
T TIGR03107 339 KKL 341 (350)
T ss_pred Hhc
Confidence 876
|
This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes |
| >COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-14 Score=135.56 Aligned_cols=152 Identities=19% Similarity=0.302 Sum_probs=113.9
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC--
Q 013368 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE-- 105 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~-- 105 (444)
++.+++|++|..++++| +.|.++.+++++.|++++.+++.. +..|+++.++|.+ +.+.|++.+|||++..-
T Consensus 2 ~~~~~~LkeL~~~~gps--G~E~eVr~~~~~el~~~~~ev~~D----~lGnlia~~~g~~-g~~~imi~AHmDEiG~mV~ 74 (355)
T COG1363 2 EELLELLKELLEAPGPS--GYEEEVRDVLKEELEPLGDEVEVD----RLGNLIAKKGGKN-GPPKVMIAAHMDEIGFMVK 74 (355)
T ss_pred hHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHHHhCCceEEc----CCCcEEEEecCCC-CCccEEEEeecceeeeeEE
Confidence 56789999999999986 899999999999999999988743 4559999998732 34679999999999210
Q ss_pred -----------C-CCCccC---------------CCcce-------------------------e---------------
Q 013368 106 -----------P-SKWSHH---------------PFGAH-------------------------L--------------- 118 (444)
Q Consensus 106 -----------~-~~W~~~---------------Pf~~~-------------------------~--------------- 118 (444)
+ .+|... ++.+. +
T Consensus 75 ~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI 154 (355)
T COG1363 75 EIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGI 154 (355)
T ss_pred EECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCC
Confidence 0 122111 00000 0
Q ss_pred --------------cCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccccc
Q 013368 119 --------------DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNS 184 (444)
Q Consensus 119 --------------~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~ 184 (444)
-.++++-+|. .|+|.+++++|++++.| + +.+++.+++++|+..||.| ++|++..... ++
T Consensus 155 ~vGd~v~~~~~~~~l~~~~i~ska-lDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVG-lrGA~~~a~~--i~- 227 (355)
T COG1363 155 RVGDFVVFDPRFRELANGRVVSKA-LDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVG-LRGAKTSAFR--IK- 227 (355)
T ss_pred CCCCEEEEcCceEEecCCcEEeee-ccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhc-cchhhccccc--cC-
Confidence 0235565655 89999999999999999 4 6678999999999999999 5898886653 43
Q ss_pred CceEEEecc
Q 013368 185 LNVGIVLDE 193 (444)
Q Consensus 185 ~d~~~~~~~ 193 (444)
.|+++.+|.
T Consensus 228 pd~aiavd~ 236 (355)
T COG1363 228 PDIAIAVDV 236 (355)
T ss_pred CCEEEEEec
Confidence 377787764
|
|
| >PRK09864 putative peptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-13 Score=133.41 Aligned_cols=255 Identities=15% Similarity=0.176 Sum_probs=170.6
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC-----
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE----- 105 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~----- 105 (444)
+++|++|+++|++| +.|.++++++.++|++++.+++. + ...|+++.. |. +.++|+|.||||+|+.-
T Consensus 3 ~~~L~~L~~~~g~S--G~E~~v~~~l~~~l~~~~dev~~-D---~~GNli~~~-g~--~~~kvml~AHmDevG~mV~~I~ 73 (356)
T PRK09864 3 IELLQQLCEASAVS--GDEQEVRDILINTLEPCVNEITF-D---GLGSFVARK-GN--KGPKVAVVGHMDEVGFMVTHID 73 (356)
T ss_pred HHHHHHHHcCCCCC--CchHHHHHHHHHHHHHhCCEEEE-C---CCCCEEEEe-CC--CCcEEEEEecccccCEEEEEEC
Confidence 56799999999986 89999999999999999998764 3 345999986 53 23699999999999221
Q ss_pred --------C-CCCcc--------------C-CCcce--------------------------------------------
Q 013368 106 --------P-SKWSH--------------H-PFGAH-------------------------------------------- 117 (444)
Q Consensus 106 --------~-~~W~~--------------~-Pf~~~-------------------------------------------- 117 (444)
+ .+|+. . ++.+.
T Consensus 74 ~~G~l~~~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD 153 (356)
T PRK09864 74 ESGFLRFTTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGD 153 (356)
T ss_pred CCCeEEEEeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCC
Confidence 0 12211 1 11110
Q ss_pred ----------ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCce
Q 013368 118 ----------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNV 187 (444)
Q Consensus 118 ----------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~ 187 (444)
. .++++.||. .|++.|+++++++++.|++ ++.+++++|+..||.| .+|++..... ++ .|+
T Consensus 154 ~v~~~~~~~~l-~~~~i~~ka-lDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvG-lrGA~~aa~~--i~-PDi 223 (356)
T PRK09864 154 FISPEANFACW-GEDKVVGKA-LDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVG-LRGAQTSAEH--IK-PDV 223 (356)
T ss_pred EEEECCCcEEE-cCCEEEEEe-CccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcc-hHHHHHHHhc--CC-CCE
Confidence 1 256676766 8999999999999999854 6799999999999999 5899987653 43 488
Q ss_pred EEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCcee
Q 013368 188 GIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVS 267 (444)
Q Consensus 188 ~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t 267 (444)
+|++|.+.. .. .|... . .
T Consensus 224 aIavDvt~~-~d---------------------------~p~~~--------------~--------------------~ 241 (356)
T PRK09864 224 VIVLDTAVA-GD---------------------------VPGID--------------N--------------------I 241 (356)
T ss_pred EEEEecccC-CC---------------------------CCCCc--------------c--------------------c
Confidence 999885321 00 00000 0 0
Q ss_pred eeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccC
Q 013368 268 VNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATD 347 (444)
Q Consensus 268 ~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 347 (444)
-....+-.|. . +|+. . . ...
T Consensus 242 ~~~~~lG~Gp------~-------------i~~~----------------------------D-----------~--~~i 261 (356)
T PRK09864 242 KYPLKLGQGP------G-------------LMLF----------------------------D-----------K--RYF 261 (356)
T ss_pred ccccccCCCC------e-------------EEEc----------------------------c-----------C--Ccc
Confidence 0001111111 0 0111 0 0 012
Q ss_pred CCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~--~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l 425 (444)
.+..+.+.+.+++++.+.+........|+||+..++. .|+|++..+...+ ..|++.|-++++++...++++..++
T Consensus 262 ~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~R---Y~Hs~~e~~~~~D~e~~~~Ll~~~~ 338 (356)
T PRK09864 262 PNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTR---YLHANSGMISKADYDALLTLIRDFL 338 (356)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccC---cCCCcceEeEHHHHHHHHHHHHHHH
Confidence 2445666666666666655411122347899988754 5899987775444 4999999999999999999999999
Q ss_pred HHHH
Q 013368 426 KAYA 429 (444)
Q Consensus 426 ~~l~ 429 (444)
..+.
T Consensus 339 ~~l~ 342 (356)
T PRK09864 339 TTLT 342 (356)
T ss_pred Hhcc
Confidence 8763
|
|
| >PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-14 Score=115.26 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=88.4
Q ss_pred ecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcc
Q 013368 206 YAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFV 284 (444)
Q Consensus 206 ~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~ 284 (444)
++++|..+++|+++|+++|+|.|+.+ ||+..+++++..|..+..+.... ........++++++.+++|. .
T Consensus 1 ~g~~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~---~~~~~~~~~~~~~~~i~gG~------~ 71 (111)
T PF07687_consen 1 IGHRGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFR---PEEFFPGPPTLNIGSIEGGT------A 71 (111)
T ss_dssp EEEEEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTST---HHHCTCTSEEEEEEEEEEES------S
T ss_pred CcCCCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccc---cccccccccceeEeecccCC------c
Confidence 47899999999999999999999988 99999999999998764321000 00122345889999999998 9
Q ss_pred cccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc
Q 013368 285 MNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319 (444)
Q Consensus 285 ~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~ 319 (444)
.|+||++|++++++|+.|.++.+++.+.|++.+++
T Consensus 72 ~n~ip~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~ 106 (111)
T PF07687_consen 72 PNVIPDEATLTVDIRYPPGEDLEEIKAEIEAAVEK 106 (111)
T ss_dssp TTEESSEEEEEEEEEESTCHHHHHHHHHHHHHHHH
T ss_pred CCEECCEEEEEEEEECCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988863
|
This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A .... |
| >KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=106.38 Aligned_cols=145 Identities=27% Similarity=0.340 Sum_probs=108.9
Q ss_pred hhHHHHHHHhhhcc-cCCCCC-CChhHHHHHHHHHHHHCCCceEE----Eeec-----------------CCCCeEEEEe
Q 013368 27 DDSIIERFRAYLQI-DTSQPN-PDYTNASKFILAQAEALSLESQT----LEFA-----------------KNKPLILLKW 83 (444)
Q Consensus 27 ~~~~~~~l~~l~~i-~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~----~~~~-----------------~~~~nl~~~~ 83 (444)
.+|..+.+.++.++ |.+..+ .+|..+.+++.+.+.++.-..+. .+.+ .+..||++++
T Consensus 56 ~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki 135 (834)
T KOG2194|consen 56 EARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKI 135 (834)
T ss_pred HHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEec
Confidence 46788889999998 555433 35668888988887776322221 1110 2446999998
Q ss_pred cCCCC-CCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEee
Q 013368 84 PGSNP-QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFV 162 (444)
Q Consensus 84 ~g~~~-~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~ 162 (444)
.+... +..-|++.+|+|+||.++ ||.|+..++|++|+++|.+.+....+..+|+++|.
T Consensus 136 ~~k~~~~~~~lLlnaHfDSvpt~~---------------------gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfN 194 (834)
T KOG2194|consen 136 SPKNGNDKNALLLNAHFDSVPTGP---------------------GATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFN 194 (834)
T ss_pred CCCCCCccceeeeeccccccCCCC---------------------CCCcchhHHHHHHHHHHHhhcCCCcccccEEEEec
Confidence 65443 333799999999999874 77899999999999999999988788999999999
Q ss_pred cCcccCccccHHHHHhcccc-ccCceEEEecc
Q 013368 163 PDEEIGGHDGAEKFADSHVF-NSLNVGIVLDE 193 (444)
Q Consensus 163 ~~EE~g~~~G~~~~~~~~~~-~~~d~~~~~~~ 193 (444)
.+||.+ +.|+..++.++.. ..+...+.+|.
T Consensus 195 gaEE~~-L~gsH~FItQH~w~~~~ka~INLea 225 (834)
T KOG2194|consen 195 GAEESG-LLGSHAFITQHPWSKNIKAVINLEA 225 (834)
T ss_pred Ccccch-hhhcccceecChhhhhhheEEeccc
Confidence 999988 6899999986644 33455666664
|
|
| >PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=90.78 Aligned_cols=86 Identities=28% Similarity=0.391 Sum_probs=66.4
Q ss_pred cEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccc
Q 013368 92 SILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171 (444)
Q Consensus 92 ~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~ 171 (444)
.|++.||+|+++... ++ -++.|+.|+.+|++++|++++.|.+.+.+++.+|+|+++.+||.| +.
T Consensus 2 ~ivi~aH~Ds~~~~~--------------~~-~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~g-l~ 65 (179)
T PF04389_consen 2 YIVIGAHYDSVGGDA--------------DG-SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQG-LL 65 (179)
T ss_dssp EEEEEEE--BESCCC---------------T-CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGT-SH
T ss_pred EEEEEeecCCCCCcC--------------CC-cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccC-cc
Confidence 589999999998221 22 566799999999999999999999977778899999999999998 58
Q ss_pred cHHHHHhcc--ccccCceEEEecc
Q 013368 172 GAEKFADSH--VFNSLNVGIVLDE 193 (444)
Q Consensus 172 G~~~~~~~~--~~~~~d~~~~~~~ 193 (444)
|++.++++. ...++.+.+.+|.
T Consensus 66 GS~~~~~~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 66 GSRAFVEHDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHHHHHHHHCHHHHEEEEEEECS
T ss_pred chHHHHHhhhcccccceeEEeccc
Confidence 999999732 2334456777774
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A .... |
| >PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.4e-07 Score=85.39 Aligned_cols=66 Identities=29% Similarity=0.383 Sum_probs=54.5
Q ss_pred CCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEecc
Q 013368 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (444)
Q Consensus 121 ~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~ 193 (444)
++++.||. .|++.++++++++++.|++.+ +..+++++|++.||.|. +|+...... ++ .|+++++|.
T Consensus 125 ~~~i~gka-lDdR~g~~~lle~l~~l~~~~--~~~~v~~v~tvqEEvG~-rGA~~aa~~--i~-PD~ai~vD~ 190 (292)
T PF05343_consen 125 NGRIVGKA-LDDRAGCAVLLELLRELKEKE--LDVDVYFVFTVQEEVGL-RGAKTAAFR--IK-PDIAIAVDV 190 (292)
T ss_dssp TTEEEETT-HHHHHHHHHHHHHHHHHTTSS---SSEEEEEEESSCTTTS-HHHHHHHHH--H--CSEEEEEEE
T ss_pred CCEEEEEe-CCchhHHHHHHHHHHHHhhcC--CCceEEEEEEeeeeecC-cceeecccc--cC-CCEEEEEee
Confidence 66688887 899999999999999998764 46999999999999994 899987663 33 478888874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A .... |
| >KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-05 Score=69.43 Aligned_cols=133 Identities=18% Similarity=0.168 Sum_probs=95.9
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC-------CCCeEEEEecCCCCCCCcEEEEeec
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK-------NKPLILLKWPGSNPQLPSILLNSHT 99 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~-------~~~nl~~~~~g~~~~~~~i~l~~H~ 99 (444)
..+..+.|.-+. +|-+-++.+..++.+||.+.|.++|+.++.....+ .-.|+++++... ....+++.+|+
T Consensus 50 ~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~--A~r~lVlachy 126 (338)
T KOG3946|consen 50 WNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPN--ASRYLVLACHY 126 (338)
T ss_pred HHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCC--cchheeeeccc
Confidence 344555544433 34433467888999999999999999888654322 134899998654 33678999999
Q ss_pred ccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcC----CCCcceEEEEeecCcc-------cC
Q 013368 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASG----FQPVRSVYLSFVPDEE-------IG 168 (444)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE-------~g 168 (444)
|+--.. ++. =+|+.|...+||+++..++.|.+.- ......+.++|.-+|| ..
T Consensus 127 dsk~~p---------------~~~--~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~D 189 (338)
T KOG3946|consen 127 DSKIFP---------------GGM--FVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPED 189 (338)
T ss_pred ccccCC---------------Ccc--eEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCcc
Confidence 996543 222 2489999999999999999987632 2345789999999998 24
Q ss_pred ccccHHHHHhc
Q 013368 169 GHDGAEKFADS 179 (444)
Q Consensus 169 ~~~G~~~~~~~ 179 (444)
+..|++.+.++
T Consensus 190 SlYGsRhLA~~ 200 (338)
T KOG3946|consen 190 SLYGSRHLAAK 200 (338)
T ss_pred ccchHHHHHHH
Confidence 57899998874
|
|
| >COG2234 Iap Predicted aminopeptidases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=73.54 Aligned_cols=91 Identities=24% Similarity=0.257 Sum_probs=67.0
Q ss_pred CeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcce
Q 013368 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (444)
Q Consensus 77 ~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (444)
.|+++++.+.......+...+|.|.+-... .++ +..-.+.|+.|+..|++++|+++|.|+... ++.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------a~~--~s~~~~~GA~DNasGva~llEiAr~l~~~~--p~~~ 251 (435)
T COG2234 185 KNVAATISGSSQIIEAIIGTAHSDSLGLLG---------AHI--DSVPTGPGADDNASGVAALLELARVLKGNP--PKRT 251 (435)
T ss_pred EEEeeeeecccccceEEEeccCCCceeeec---------ccc--cCCcCCCCcccccHHHHHHHHHHHHHhcCC--CCce
Confidence 366666665522234566666666665542 111 334445699999999999999999998875 7899
Q ss_pred EEEEeecCcccCccccHHHHHhccc
Q 013368 157 VYLSFVPDEEIGGHDGAEKFADSHV 181 (444)
Q Consensus 157 i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (444)
|.|++...||.| +.|+.+++.+..
T Consensus 252 v~f~~~~aEE~G-l~GS~~~~~~~~ 275 (435)
T COG2234 252 VRFVAFGAEESG-LLGSEAYVKRLS 275 (435)
T ss_pred EEEEEecchhhc-ccccHHHHhcCC
Confidence 999999999998 589999998754
|
|
| >KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=68.49 Aligned_cols=82 Identities=26% Similarity=0.325 Sum_probs=64.5
Q ss_pred CCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHH---HHcCC
Q 013368 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRL---KASGF 151 (444)
Q Consensus 75 ~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l---~~~~~ 151 (444)
...||++.++|+.....-|++.+|-|+.-. |+.|..+|.+.+++..+.+ ++.++
T Consensus 337 ki~NIig~I~Gs~epD~~ViigahrDSw~~-----------------------Ga~dp~sGta~Ll~i~~~~~~~~k~gw 393 (702)
T KOG2195|consen 337 KIQNIIGKIEGSEEPDRYVIIGAHRDSWTF-----------------------GAIDPNSGTALLLEIARALSKLKKRGW 393 (702)
T ss_pred eeeeEEEEEecCcCCCeEEEEecccccccc-----------------------CCcCCCccHHHHHHHHHHHHHHHHcCC
Confidence 356999999995543468999999887443 3677777877777766655 55789
Q ss_pred CCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 152 QPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
++.++|+|+.+.+||-|. .|+-.+++..
T Consensus 394 rP~RtI~F~sWdAeEfGl-iGStE~~E~~ 421 (702)
T KOG2195|consen 394 RPRRTILFASWDAEEFGL-LGSTEWAEEY 421 (702)
T ss_pred CccceEEEEEccchhccc-cccHHHHHHH
Confidence 999999999999999984 7999888854
|
|
| >KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0049 Score=59.87 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCeEEEEec-C-----CCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc
Q 013368 76 KPLILLKWP-G-----SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149 (444)
Q Consensus 76 ~~nl~~~~~-g-----~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~ 149 (444)
.+|+.+++. | ++...|+|++.+|+||....+. +--|+..+.+|+.++|+.++.+.+.
T Consensus 193 i~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~-----------------lsvgADSNGSGvvaLLelarlfSkl 255 (555)
T KOG2526|consen 193 ILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPG-----------------LSVGADSNGSGVVALLELARLFSKL 255 (555)
T ss_pred cceEEeecccccccccccccCCeEEEEEeccccccCCC-----------------CCCCCCCCCccHHHHHHHHHHHHHH
Confidence 468999886 3 2346899999999999988641 1125555667888999999988773
Q ss_pred ----CCCCcceEEEEeecCcccCccccHHHHHhc--cccc-cCceEEEecc
Q 013368 150 ----GFQPVRSVYLSFVPDEEIGGHDGAEKFADS--HVFN-SLNVGIVLDE 193 (444)
Q Consensus 150 ----~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~--~~~~-~~d~~~~~~~ 193 (444)
.-..+.|+.|+.+.+.-.. ..|.+.+++- ..++ .+|+++|+|.
T Consensus 256 y~ypsTrakYnLlF~lt~aG~lN-yqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 256 YDYPSTRAKYNLLFILTAAGKLN-YQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred hcCcccccceeEEEEEccCcccc-ccchhhhhhcchHHHHhcccEEEEhhh
Confidence 1245789999999876655 3688888763 2333 5789999873
|
|
| >PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.046 Score=50.39 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=57.5
Q ss_pred CcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc---CCCCcceEEEEeecCccc
Q 013368 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS---GFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 91 ~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~~EE~ 167 (444)
|.|++.+.||+...-. +- +.|+.+.-.|++++|++++.|.+. ...++.+|.|.|..+|--
T Consensus 1 ~iIlv~armDs~s~F~--------------~~---s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~ 63 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH--------------DL---SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESF 63 (234)
T ss_pred CEEEEEecccchhccc--------------CC---CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccc
Confidence 5799999999987641 11 358888889999999999999875 235789999999999999
Q ss_pred CccccHHHHHhc
Q 013368 168 GGHDGAEKFADS 179 (444)
Q Consensus 168 g~~~G~~~~~~~ 179 (444)
|. .|+..|+.+
T Consensus 64 dY-iGS~R~vyD 74 (234)
T PF05450_consen 64 DY-IGSSRFVYD 74 (234)
T ss_pred cc-cchHHHHHH
Confidence 85 799888864
|
Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane |
| >PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.032 Score=53.34 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013368 347 DSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 420 (444)
Q Consensus 347 ~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~--gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~ 420 (444)
..+..+.+.+.+++++.+.+........|+||++.++.. |+|++.++.... ..|++.|.++++++...+++
T Consensus 220 i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~~~~~~~Gi~t~~i~iP~r---y~Hs~~e~~~~~Di~~~~~L 292 (292)
T PF05343_consen 220 IPNPKLVDKLREIAEENGIPYQREVFSGGGTDAGAIQLSGGGIPTAVISIPCR---YMHSPVEVIDLDDIEATIDL 292 (292)
T ss_dssp ESHHHHHHHHHHHHHHTT--EEEEEESSSSSTHHHHHTSTTSSEEEEEEEEEB---STTSTTEEEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEecCCcccHHHHHHHcCCCCCEEEEecccc---cCCCcceEEEHHHHHHHhhC
Confidence 446789999999999988765222445689999999865 899988875544 49999999999999988764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A .... |
| >PRK02256 putative aminopeptidase 1; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.11 Score=52.83 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee-----ecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEI-----FPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~-----~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.+..++..+.+++++.+.+...... .+|+||+.+++..|+|++-+|.... .+|++.|-+..+++...++++.
T Consensus 380 ~~~~~~~~i~~iA~~~~Ip~Q~~~~~r~d~~~GgTig~~~s~~Gi~tvdiGiP~l---~MHS~rE~~~~~D~~~~~~ll~ 456 (462)
T PRK02256 380 ANAEFVAEVRNLFNKNNVVWQTAELGKVDQGGGGTIAKFLANYGMEVIDCGVALL---SMHSPFEIASKADIYETYKAYK 456 (462)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCcChHHHHHcCCCCcEEEechhhh---ccccHHHHhhHHHHHHHHHHHH
Confidence 3778888899999888776522112 2589998888888999999997766 4999999999999999999998
Q ss_pred HHHH
Q 013368 423 SIIK 426 (444)
Q Consensus 423 ~~l~ 426 (444)
.++.
T Consensus 457 ~f~~ 460 (462)
T PRK02256 457 AFLE 460 (462)
T ss_pred HHHh
Confidence 8764
|
|
| >PTZ00371 aspartyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.49 Score=48.36 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=62.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCce---eecCCcchHHHH--hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 347 DSSNPWWNLLEEAVRKANGKLGKPE---IFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 347 ~~~~~l~~~~~~a~~~~~~~~~~~~---~~~g~tD~~~~~--~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
..|..+...+++++++.+.+..... ..++|++++.+. ..|+|++-+|+.-. .+|++.|-+..+++...++++
T Consensus 372 ~td~~~~a~i~~la~~~~Ip~Q~~~~~~d~~~GsTig~i~~s~~Gi~tvDiGiP~l---~MHS~rE~~~~~D~~~~~~l~ 448 (465)
T PTZ00371 372 ATNGVTASLLKAIAKKANIPIQEFVVKNDSPCGSTIGPILSSNLGIRTVDIGIPQL---AMHSIREMCGVVDIYYLVKLI 448 (465)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHhCCCCcEEEechhhc---ccccHHHHccHHHHHHHHHHH
Confidence 3468889999999998876542211 223467766553 47999999998776 399999999999999999999
Q ss_pred HHHHHHHHcc
Q 013368 422 ESIIKAYASY 431 (444)
Q Consensus 422 ~~~l~~l~~~ 431 (444)
..++..+...
T Consensus 449 ~af~~~~~~~ 458 (465)
T PTZ00371 449 KAFFTNYSKV 458 (465)
T ss_pred HHHHHhhhhh
Confidence 9988764433
|
|
| >PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.93 E-value=3.9 Score=39.26 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=73.7
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC-----------------CCC-eEEEEecCCC-CCCC
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK-----------------NKP-LILLKWPGSN-PQLP 91 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~-----------------~~~-nl~~~~~g~~-~~~~ 91 (444)
+.+-|+|++.|.-- -.....++++++.++++|++++.++... ..| -++.+|.|.+ ...+
T Consensus 1 vn~aRdL~n~P~n~--~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~ 78 (311)
T PF00883_consen 1 VNLARDLVNTPPNI--LTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKK 78 (311)
T ss_dssp HHHHHHHHHS-TTT--SSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSE
T ss_pred ChHHHhhhCCChhh--cCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCc
Confidence 35678899998842 4566889999999999999998776420 122 2445666654 3445
Q ss_pred cEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 92 SILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 92 ~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
+|+|.|= +||=... .+- .+.+. +=-.+++|.|+.+.+++++.+.+ ++.+|..+....|-.
T Consensus 79 ~i~LVGKGiTFDtGG~~----------lKp--~~~M~--~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~l~~~EN~ 141 (311)
T PF00883_consen 79 PIALVGKGITFDTGGLS----------LKP--SGGME--GMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAVLPLAENM 141 (311)
T ss_dssp EEEEEEEEEEEEE-TTS----------SSC--STTGG--GGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE-
T ss_pred cEEEEcceEEEecCCcc----------CCC--Ccchh--hcccCcchHHHHHHHHHHHHHcC--CCceEEEEEEccccc
Confidence 6777664 3332221 000 11110 11334578889999999999876 568898888888753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A .... |
| >cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains | Back alignment and domain information |
|---|
Probab=90.55 E-value=5.2 Score=40.96 Aligned_cols=125 Identities=15% Similarity=0.125 Sum_probs=75.8
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec----CCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
.+.+.|+|++-|.-- -.....++++++.+++.|++++.++.. .+.+.+++.=+|+.. .|.++..-+... .
T Consensus 156 ~~~~aRdL~n~P~n~--~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~p~lv~l~Y~g~---~ 229 (468)
T cd00433 156 GVNLARDLVNTPAND--LTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEE-PPRLIVLEYKGK---G 229 (468)
T ss_pred HHHHHHHhhcCCccc--CCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCC-CCEEEEEEECCC---C
Confidence 456788888888842 345678899999999999999987743 245556666556543 355544333221 1
Q ss_pred CCCCccCCCcceecCCCeEEecC---------cccc---hhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARG---------SQDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG---------~~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
+ ...|... +- .|.-|=-| =.+| ++|.|+.+.+++++.+.+ ++.+|..+....|-.
T Consensus 230 ~---~~~~i~L-VG-KGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN~ 296 (468)
T cd00433 230 A---SKKPIAL-VG-KGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAENM 296 (468)
T ss_pred C---CCCcEEE-Ec-CceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeecC
Confidence 1 0111111 10 11111111 1223 367789999999999876 588999988888853
|
Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants. |
| >PRK02813 putative aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.48 Score=47.87 Aligned_cols=76 Identities=9% Similarity=0.055 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee---ecCCcchHHHH--hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEI---FPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~---~~g~tD~~~~~--~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.+......+.+++++.+.+...... .+||+|++.+. +.|+|++-.|..-. .+|++.|-+..+++...++++.
T Consensus 346 t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d~~gGstig~i~~s~~Gi~tvdiGiP~l---~MHS~~E~~~~~D~~~~~~l~~ 422 (428)
T PRK02813 346 TDAESAAVFKLLCEKAGVPYQEFVNRSDMPCGSTIGPITAARLGIRTVDVGAPML---AMHSARELAGVKDHAYLIKALT 422 (428)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEecCCCCCccHHHHHHHhCCCCcEEEeChhhc---ccccHHHHccHHHHHHHHHHHH
Confidence 4678888899999888765422112 23677777664 46999999997766 4999999999999999999998
Q ss_pred HHHH
Q 013368 423 SIIK 426 (444)
Q Consensus 423 ~~l~ 426 (444)
.++.
T Consensus 423 ~f~~ 426 (428)
T PRK02813 423 AFFS 426 (428)
T ss_pred HHhc
Confidence 7653
|
|
| >PRK02256 putative aminopeptidase 1; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.94 Score=46.15 Aligned_cols=49 Identities=33% Similarity=0.457 Sum_probs=38.5
Q ss_pred CCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHH
Q 013368 121 QGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (444)
Q Consensus 121 ~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (444)
++.|.|++ -|++.++.+++.+++.+. ++...++++++..||+|+ .|+..
T Consensus 251 ~efI~s~r-LDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs-~ga~g 299 (462)
T PRK02256 251 RSLIGAYG-QDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGS-EGNTG 299 (462)
T ss_pred cceeeccc-cccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCC-cchhh
Confidence 66777765 899999999999987653 356789999999999995 45544
|
|
| >COG4882 Predicted aminopeptidase, Iap family [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.80 E-value=1.4 Score=42.47 Aligned_cols=63 Identities=24% Similarity=0.171 Sum_probs=44.5
Q ss_pred CeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcce
Q 013368 77 PLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS 156 (444)
Q Consensus 77 ~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~ 156 (444)
.|+++.-.+ .+.++++.+|+|+=-. |..|+-.|++..++++..|..++ ..
T Consensus 179 y~~Ia~~~~---en~vv~i~AH~DHW~~-----------------------G~tDN~lg~~~AV~~~~~lr~~~----~~ 228 (486)
T COG4882 179 YNVIAVDGG---ENGVVLIGAHLDHWYT-----------------------GFTDNILGVAQAVETAGRLRGRG----LA 228 (486)
T ss_pred EEEEEecCC---CCCceEEeechhhhhh-----------------------cccchhhhHHHHHHHHHHHhhcC----cc
Confidence 366665322 2368999999998444 44566669999999999988765 34
Q ss_pred EEEEeecCcccCc
Q 013368 157 VYLSFVPDEEIGG 169 (444)
Q Consensus 157 i~~~~~~~EE~g~ 169 (444)
..++..+.||.|+
T Consensus 229 ~~lv~FtAEE~g~ 241 (486)
T COG4882 229 AGLVVFTAEEHGM 241 (486)
T ss_pred eeEEEEeccccCC
Confidence 6677778888775
|
|
| >PRK00913 multifunctional aminopeptidase A; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=16 Score=37.53 Aligned_cols=122 Identities=15% Similarity=0.094 Sum_probs=74.4
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec----CCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
.+.+.|+|++.|.-- -.....++++++.++++|++++..+.. .+...+++.=+|+.. .|.++..-+. |..
T Consensus 173 ~~~~aRdL~n~P~n~--~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~-~prli~l~Y~---g~~ 246 (483)
T PRK00913 173 GVNLARDLVNEPPNI--LTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSAN-PPRLIVLEYK---GGK 246 (483)
T ss_pred HHHHHHHhhCCChhh--cCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCC-CCeEEEEEEC---CCC
Confidence 455678888888742 345678888888899999999877643 245567776566542 3454443332 100
Q ss_pred CCCCccCCCcceecCCCeEEecC---------ccc---chhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARG---------SQD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG---------~~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
.|.. -+- .|.-|=-| -.+ +.+|.|+.+.+++++.+.+ ++.+|+.+....|-.
T Consensus 247 ------~~i~-LVG-KGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~ENm 310 (483)
T PRK00913 247 ------KPIA-LVG-KGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACENM 310 (483)
T ss_pred ------CeEE-EEc-CceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 1111 010 11111111 112 2367788999999998876 688999998888864
|
|
| >COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.31 E-value=21 Score=36.68 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=69.0
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCC-CceEEEeec----CCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS-LESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G-~~~~~~~~~----~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
.+.+.|+|++.|.-. -.....++. .+.|++.+ ++++.++.. .+.+.+++.=+|+. ..|+++.. +=-+.
T Consensus 169 ~v~~aRdLvN~P~n~--l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~-~~Prlivl---~y~g~ 241 (485)
T COG0260 169 GVNLARDLVNTPANI--LTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSA-RPPRLIVL---EYNGK 241 (485)
T ss_pred HHHHHHHHhhCCccc--CCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCC-CCCeEEEE---EcCCC
Confidence 467889999999853 344566667 67777765 888876643 24445666655543 23544422 11111
Q ss_pred CCCCCccCCCcceecCCCeEEecCc---------------ccch---hHHHHHHHHHHHHHHcCCCCcceEEEEeecCcc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGS---------------QDMK---CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~---------------~D~k---~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE 166 (444)
.. +..|. .+.|.|. .+|| +|.|+.+.++.++.+.+ ++.+++.+....|-
T Consensus 242 ~~---~~~~i--------aLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~--l~vnv~~vl~~~EN 308 (485)
T COG0260 242 GK---AKKPI--------ALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELK--LPVNVVGVLPAVEN 308 (485)
T ss_pred CC---CCceE--------EEEcCceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHHHcC--CCceEEEEEeeecc
Confidence 00 00010 1222221 2233 57788899999998876 67889888888875
Q ss_pred c
Q 013368 167 I 167 (444)
Q Consensus 167 ~ 167 (444)
.
T Consensus 309 m 309 (485)
T COG0260 309 M 309 (485)
T ss_pred C
Confidence 4
|
|
| >PRK05015 aminopeptidase B; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=55 Score=32.88 Aligned_cols=127 Identities=15% Similarity=0.107 Sum_probs=71.6
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC---CCceEEEeec----CCCCeEEEEecCCCCCCCcEEEEeecccc
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL---SLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~---G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~i~l~~H~Dtv 102 (444)
...+.|+|++-|.-- -.....++...++++++ +++++.++.. .+...+++.=+|+. .|..++.-++ -
T Consensus 102 ~~~~aRdLvn~P~n~--ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~--~pP~lv~L~Y--~ 175 (424)
T PRK05015 102 IIDWVRDTINAPAEE--LGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSE--RPPVLLALDY--N 175 (424)
T ss_pred HHHHHHHHhcCCccc--CCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCC--CCCEEEEEEe--c
Confidence 466789999999842 34456677777777776 5777766543 24445666655653 3444443333 2
Q ss_pred cCCCCCCccCCCc-ceecCCCeEEecCc---------cc---chhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC
Q 013368 103 PSEPSKWSHHPFG-AHLDSQGNIFARGS---------QD---MKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG 168 (444)
Q Consensus 103 p~~~~~W~~~Pf~-~~~~~~g~l~GrG~---------~D---~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g 168 (444)
|.+.. ..|.. .-+- .|.-|=-|- .. +.+|.|+.+.+++.+.+.+ ++.+|..++...|-.-
T Consensus 176 ~~g~~---~~~v~~aLVG-KGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~~--l~~nV~~il~~aENmi 248 (424)
T PRK05015 176 PTGDP---DAPVYACLVG-KGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITRG--LNKRVKLFLCCAENLI 248 (424)
T ss_pred CCCCC---CCCeeEEEec-CceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhcC--CCceEEEEEEecccCC
Confidence 32211 11210 1111 122211111 11 2256678888888887775 6789999999888643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 444 | ||||
| 1q7l_A | 198 | Zn-binding Domain Of The T347g Mutant Of Human Amin | 2e-53 | ||
| 1q7l_B | 88 | Zn-binding Domain Of The T347g Mutant Of Human Amin | 8e-19 | ||
| 3ic1_A | 377 | Crystal Structure Of Zinc-Bound Succinyl-Diaminopim | 3e-07 | ||
| 3pfo_A | 433 | Crystal Structure Of A Putative Acetylornithine Dea | 3e-06 | ||
| 1vgy_A | 393 | Crystal Structure Of Succinyl Diaminopimelate Desuc | 5e-06 | ||
| 1lfw_A | 470 | Crystal Structure Of Pepv Length = 470 | 1e-05 | ||
| 3ct9_A | 356 | Crystal Structure Of A Putative Zinc Peptidase (Np_ | 3e-04 | ||
| 4h2k_A | 269 | Crystal Structure Of The Catalytic Domain Of Succin | 6e-04 |
| >pdb|1Q7L|A Chain A, Zn-binding Domain Of The T347g Mutant Of Human Aminoacylase- I Length = 198 | Back alignment and structure |
|
| >pdb|1Q7L|B Chain B, Zn-binding Domain Of The T347g Mutant Of Human Aminoacylase- I Length = 88 | Back alignment and structure |
|
| >pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 377 | Back alignment and structure |
|
| >pdb|3PFO|A Chain A, Crystal Structure Of A Putative Acetylornithine Deacetylase (Rpa2325) From Rhodopseudomonas Palustris Cga009 At 1.90 A Resolution Length = 433 | Back alignment and structure |
|
| >pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate Desuccinylase Length = 393 | Back alignment and structure |
|
| >pdb|1LFW|A Chain A, Crystal Structure Of Pepv Length = 470 | Back alignment and structure |
|
| >pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase (Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.31 A Resolution Length = 356 | Back alignment and structure |
|
| >pdb|4H2K|A Chain A, Crystal Structure Of The Catalytic Domain Of Succinyl-Diaminopimelate Desuccinylase From Haemophilus Influenzae Length = 269 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 198 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 2e-83
Identities = 97/196 (49%), Positives = 126/196 (64%)
Query: 21 SSPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLIL 80
S + + + FR YL+I T QP PDY A F A L L Q +E A + +
Sbjct: 3 SKGPEEEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTV 62
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
L WPG+NP L SILLNSHTDVVP WSH PF A DS+G I+ARG+QDMKCV +QYL
Sbjct: 63 LTWPGTNPTLSSILLNSHTDVVPVFKEHWSHDPFEAFKDSEGYIYARGAQDMKCVSIQYL 122
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE 200
EA+RRLK G + R+++++FVPDEE+GGH G E F F++L G LDEG+A+ T+
Sbjct: 123 EAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEFHALRAGFALDEGIANPTD 182
Query: 201 DYRAFYAERCPWWLVI 216
+ FY+ER PWW+ +
Sbjct: 183 AFTVFYSERSPWWVRV 198
|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 5e-42
Identities = 68/410 (16%), Positives = 133/410 (32%), Gaps = 44/410 (10%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNA-SKFILAQAEALSLESQTLEFAKNK--PLILLKWP 84
++I+ + I+T + + A F+ A+ + L + A I+ K
Sbjct: 19 PAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIK 78
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGM-QYLEAI 143
G ++LL SH D V + + PF ++ + G D K G L +
Sbjct: 79 GRGG--KNLLLMSHMDTVYLKGI-LAKAPF--RVE-GDKAYGPGIADDKG-GNAVILHTL 131
Query: 144 RRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYR 203
+ LK G + ++ + F DEE G G+ + + + + ++ D +
Sbjct: 132 KLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQEEAKLA-DYVLSFE---PTSAGDEK 186
Query: 204 AFYAERCPWWLVIKARGAPGHGAKLYDN--SAMENLFKSIESVRRFRASQFDLVKAGLKA 261
++ + G H + +A+ + +
Sbjct: 187 LSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMN------------IDD 234
Query: 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
+ + + N KAG S N+ P+ A D+R D ++ + + E
Sbjct: 235 KAKNLRFNWTIAKAGNVS------NIIPASATLNADVRYARNEDFDAAMKTLEERAQQKK 288
Query: 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARY 381
+ GRP A + + ++A G LG E TDA Y
Sbjct: 289 LPEA-----DVKVIVTRGRPAFNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAY 343
Query: 382 FRERGLPAI-GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430
G P I D E+++ + + + + +I +
Sbjct: 344 AALSGKPVIESLGLPGFGYH--SDKAEYVDISAIPRRLYMAARLIMDLGA 391
|
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 6e-42
Identities = 74/425 (17%), Positives = 138/425 (32%), Gaps = 47/425 (11%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP--- 84
+ + + +Q + + +++ Q + T A K
Sbjct: 26 NDQVAFLQRMVQFRS--VRGEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMD 83
Query: 85 --------------GSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGS 129
S+ + S++L H DVVP P WS P+ A + G + RG+
Sbjct: 84 TIDPAGSMQVVATADSDGKGRSLILQGHIDVVPEGPVDLWSDPPYEAKVR-DGWMIGRGA 142
Query: 130 QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189
QDMK + A+ ++ +G+ P V++ V +EE G+ GA G
Sbjct: 143 QDMKGGVSAMIFALDAIRTAGYAPDARVHVQTVTEEESTGN-GALSTLMR--------GY 193
Query: 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRFR 248
D L + A+ W ++ RG P H A SA+ + I + +
Sbjct: 194 RADACLIPEPTGHTLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLIRAFEEYT 253
Query: 249 ASQFD--LVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDA 306
+ + N+ +K G + + + E + +
Sbjct: 254 KELNAQAVRDPWFGQVKNPIKFNVGIIKGGDWA------SSTAAWCELDCRLGLLTGDTP 307
Query: 307 ESLERRIVEEWAPASRNMTFEFKQRASLHDK--FGRPILTATDSSNPWWNLLEEAVRKAN 364
+ R I + A A +F + A L P + ++L A + A
Sbjct: 308 QEAMRGIEKCLADAQATDSFLSENPAELVWSGFQADPAVCEPGG--VAEDVLTAAHKAAF 365
Query: 365 GKLGKPEIFPASTDARYF-RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 423
+ A D RY+ + G+PA+ + P H +E ++ K
Sbjct: 366 NAPLDARLSTAVNDTRYYSVDYGIPALCYGP---YGQGPHAFDERIDLESLRKTTLSIAL 422
Query: 424 IIKAY 428
+ +
Sbjct: 423 FVAEW 427
|
| >1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 Length = 88 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-35
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 350 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 409
NPWW + N L +PEI PA+ D RY R G+PA+GFSPM TP+LLHDH+E L
Sbjct: 1 NPWWAAFSRVCKDMNLTL-EPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERL 59
Query: 410 NQAEYLKGIDIYESIIKAYASYVQHSKD 437
++A +L+G+DIY ++ A AS D
Sbjct: 60 HEAVFLRGVDIYTRLLPALASVPALPSD 87
|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 Length = 470 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 2e-34
Identities = 73/467 (15%), Positives = 141/467 (30%), Gaps = 85/467 (18%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D+I++ + ID+S+ + T +A++ + F
Sbjct: 14 DAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRV 73
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + H DVVP W+ PF +D +G I+ RGS D K + +
Sbjct: 74 NFGAGDKRLGIIGHMDVVP-AGEGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGML 132
Query: 145 RLKASGFQPVRSVYLS-------------------------FVPDEE------------- 166
LK +GF+P + + F PD E
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNWVGIDYYLKHEPTPDIVFSPDAEYPIINGEQGIFTL 192
Query: 167 ---IGGHDGAEKFADSHVFNSLNVGIVLDEGLASTT-----------EDYRAFYAERCPW 212
D + + + A+ + E + A +
Sbjct: 193 EFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELDGSF 252
Query: 213 -----WLVIKARGAPGHGAKLYD-NSAMENLFKSIESV----RRFRASQFDLVKAGLKAE 262
I G H + ++ L ++ R F
Sbjct: 253 EINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFY 312
Query: 263 GEVVSVNMAFLKAGTPSPN-GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS 321
G+ + + G + + +A ++R P TD +++ ++++++++
Sbjct: 313 GKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSGI- 371
Query: 322 RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARY 381
+ ++ F P P L + K GK G + T R
Sbjct: 372 ----LDVT-----YNGFEEPHYVPGSD--PMVQTLLKVYEKQTGKPGHEVVIGGGTYGRL 420
Query: 382 FRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY-ESIIK 426
F + F N P+++H NEF+ + + I IY E+I +
Sbjct: 421 FE----RGVAFGAQPENGPMVMHAANEFMMLDDLILSIAIYAEAIYE 463
|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} Length = 364 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 3e-31
Identities = 77/408 (18%), Positives = 143/408 (35%), Gaps = 66/408 (16%)
Query: 28 DSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
I+E ++ + P + + FI+ + ++ ++ +++L G
Sbjct: 6 QHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMDHDGIPSVMVLPEKGR 65
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEA 142
+LL +H DVV F ++ ++ RG+ D K + + +
Sbjct: 66 ----AGLLLMAHIDVVD-----AEDDLFVPRVE-NDRLYGRGANDDKYAVALGLVMFRDR 115
Query: 143 IRRLKASGFQPVR-SVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTED 201
+ LKA+G ++ L DEEIGG +GA K + + +G
Sbjct: 116 LNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPLIRADYVVAL----DG----GNP 167
Query: 202 YRAFYAERCPWWLVIKARGAPGHGAK--LYDNSAMENLFKSIESVRRFRA-SQFDLVKAG 258
+ E+ + + G HGA+ + N A++ L + ++ A D
Sbjct: 168 QQVITKEKGIIDIKLTCTGKAAHGARPWMGVN-AVDLLMEDYTRLKTLFAEENEDHWHR- 225
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
+VN+ ++AG N P AE F+IRV D +L +I + +
Sbjct: 226 --------TVNLGRIRAGE------STNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVS 271
Query: 319 PASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 378
++ P+ A DS P+ L GK ++D
Sbjct: 272 -------------GTVSIVRTVPVFLAADS--PYTERLLALSGATAGKAH------GASD 310
Query: 379 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426
ARY E GL + + + H +E L+ D + +
Sbjct: 311 ARYLGENGLTGVVWGAEGFNTL--HSRDECLHIPSLQSIYDPLMQLAR 356
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A Length = 492 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 74/471 (15%), Positives = 134/471 (28%), Gaps = 89/471 (18%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D II + L I++ + + + + +AL + F + +
Sbjct: 34 DQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRI 93
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + + H DVVP W +PF + + I ARG+ D K + AI+
Sbjct: 94 EAGKGNDVLGILCHVDVVP-AGDGWDSNPFEPVVT-EDAIIARGTLDDKGPTIAAYYAIK 151
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDG------------------------AEK----- 175
L+ + +++ DEE EK
Sbjct: 152 ILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTF 211
Query: 176 ------------------------FADSHVFNSLNVGIVLDEGLASTTEDYRAFYA---- 207
+ V + +++ E + +D+ F
Sbjct: 212 DLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHL 271
Query: 208 ----ERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVR----RFRASQFDLVKAG 258
LV+ G HG +A L K + S+ F
Sbjct: 272 QGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLF 331
Query: 259 LKAEGEVVSVNMAFLKAGTPSPN-GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
GE + + G + N G + + G ++R P + E R E
Sbjct: 332 NSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEI 391
Query: 318 APASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST 377
+ K P + P+ L A R + +P T
Sbjct: 392 QQY--GFEVKL-------GKVQPPHYVDKND--PFVQKLVTAYRNQTNDMTEPYTIGGGT 440
Query: 378 DARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIY-ESIIK 426
AR + F +++ L+H NE++ + + IY E+I
Sbjct: 441 YARNLD----KGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYS 487
|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A Length = 369 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 73/417 (17%), Positives = 113/417 (27%), Gaps = 75/417 (17%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS-LESQTLEFAKNKPLILLKWPGS 86
S +E + DT P L + + ++ +
Sbjct: 9 ASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLPGFQVEVIDHGDGAVSLYAVRGT- 67
Query: 87 NPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEA 142
P L N H D VP P WS P + + G D+K + + A
Sbjct: 68 ----PKYLFNVHLDTVPDSP-HWSADPHVMRRT-EDRVIGLGVCDIKGAAAAL----VAA 117
Query: 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE-- 200
F DEE F L E
Sbjct: 118 ANAGD-------GDAAFLFSSDEEANDPRCIAAFLARG----------LPYDAVLVAEPT 160
Query: 201 DYRAFYAERCPWWLVIKARGAPGHGAKLYD--NSAMENLFKSIESVRRFRASQFDLVKAG 258
A A R ++++ G GH + D SA+ + + L A
Sbjct: 161 MSEAVLAHRGISSVLMRFAGRAGHASGKQDPAASALHQA---MRWGGKALDHVESLAHA- 216
Query: 259 LKAEGEV--VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEE 316
G + + N+ + G N+ AE F R P+ D + L
Sbjct: 217 --RFGGLTGLRFNIGRVDGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGF 268
Query: 317 WAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP--EIFP 374
PA+ + + F P L + D A R L P
Sbjct: 269 ADPAAAHFE----------ETFRGPSLPSGDI--ARAEERRLAARDVADALDLPIGNAVD 316
Query: 375 ASTDARYFRERGLPAIGFSP----MANTPILLHDHNEFLNQAEYLKGIDIYESIIKA 427
T+A F G A+ + P A H +EF+ A+ + ++ II
Sbjct: 317 FWTEASLFSAGGYTALVYGPGDIAQA------HTADEFVTLAQLQRYVESVNRIING 367
|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 9e-28
Identities = 71/374 (18%), Positives = 130/374 (34%), Gaps = 70/374 (18%)
Query: 65 LESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNI 124
+E++ ++ + + P + + P+ILLNSH D V + W PF + G +
Sbjct: 41 IEAEGMQTGRKGNNVWCLSPMFDLKKPTILLNSHIDTVKPV-NGWRKDPFTPREE-NGKL 98
Query: 125 FARGSQDMK----CVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
+ GS D + L+ +L + ++ +EE+ G +G E
Sbjct: 99 YGLGSNDAGASVVSL----LQVFLQLCRTSQN--YNLIYLASCEEEVSGKEGIESVLPGL 152
Query: 181 VFNSLNVGIVLDEGLASTTE--DYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLF 238
++ IV E + + AE+ L + A G GH A+ ++A+ +
Sbjct: 153 P--PVSFAIVG--------EPTEMQPAIAEKGLMVLDVTATGKAGHAARDEGDNAIYKVL 202
Query: 239 KSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
I R +R + G V +++ + AGT N V+ P + DI
Sbjct: 203 NDIAWFRDYRFEKES------PLLGPV-KMSVTVINAGT-QHN--VV---PDKCTFVVDI 249
Query: 299 RVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEE 358
R E L I + A ++ +F + D +P+
Sbjct: 250 RSNELYSNEDLFAEIRKHIACDAKARSFRLN-------------SSRIDEKHPF------ 290
Query: 359 AVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSP----MANTPILLHDHNEFLNQAEY 414
V+KA P P +D ++ P + H E++ E
Sbjct: 291 -VQKAVKMGRIPFGSPTLSDQALM---SFASVKIGPGRSSRS------HTAEEYIMLKEI 340
Query: 415 LKGIDIYESIIKAY 428
+ I IY ++
Sbjct: 341 EEAIGIYLDLLDGL 354
|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 61/353 (17%), Positives = 99/353 (28%), Gaps = 71/353 (20%)
Query: 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRRL 146
++L H D VP + ++ G ++ G+ DMK L L
Sbjct: 70 SRVMLAGHIDTVPIAD------NLPSRVE-DGIMYGCGTVDMKSGLAVY----LHTFATL 118
Query: 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTE--DYRA 204
S + + L EE+ H H+ + + D LA E
Sbjct: 119 ATST-ELKHDLTLIAYECEEVADHLNGLG----HIRDEHPEWLAAD--LALLGEPTGGWI 171
Query: 205 FYAERCPWWLVIKARGAPGHGAK--LYDNSAMENLFKSIESVRRFRASQ----FDLVKAG 258
+ + + A G H A+ L DN AM L I V ++A++ + G
Sbjct: 172 EAGCQGNLRIKVTAHGVRAHSARSWLGDN-AMHKLSPIISKVAAYKAAEVNIDGLTYREG 230
Query: 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
L +V +G + N+ P A + R P D V E
Sbjct: 231 L----NIVFCE-----SGVAN------NVIPDLAWMNLNFRFAPNRDLNEAIEH-VVETL 274
Query: 319 PASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEI-FPAST 377
E+ + + A G + T
Sbjct: 275 ELDGQDGIEWAVE-------DGAGGALPGLGQQ----VTSGLIDAVG--REKIRAKFGWT 321
Query: 378 DARYFRERGLPAIGFSP----MANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426
D F G+PA+ F A H +E + I + +
Sbjct: 322 DVSRFSAMGIPALNFGAGDPSFA------HKRDEQCPVEQITDVAAILKQYLS 368
|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} Length = 396 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-22
Identities = 67/421 (15%), Positives = 138/421 (32%), Gaps = 71/421 (16%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPL----ILLKW 83
++ F +QID+ + + + + AL L+ + E AK+ L ++
Sbjct: 24 QRLLNTFLELVQIDS--ETGNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTM 81
Query: 84 PGSNPQ--LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQ----DMKCVGM 137
+ + +P + L SH D V + P + G I++ G+ D K
Sbjct: 82 NSTIEEGEVPKLYLTSHMDTVVPA---INVKPI---VKDDGYIYSDGTTILGADDKAGLA 135
Query: 138 QYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLD-EGLA 196
LE ++ +K P + EE G GA++ +S + ++ + G +D
Sbjct: 136 AMLEVLQVIKEQQI-PHGQIQFVITVGEESGLI-GAKEL-NSELLDA-DFGYAIDASADV 191
Query: 197 STTEDYRAFYAERCPWWLVIKARGAPGH-GAKLYDNSAMENLFKSIESVRRFRASQFDLV 255
TT A + K G H SA+ K+I ++ +
Sbjct: 192 GTTV-VGAPTQ----MLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLGQVD----- 241
Query: 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI-- 313
E+ + N+ G+ + N+ E + R + D E ++ ++
Sbjct: 242 --------EITTANIGKFHGGSAT------NIVADEVILEAEAR---SHDPERIKTQVKH 284
Query: 314 VEEWAPASRNMTFEFKQRASLHDKFG-RPILTATDSSNPWWNLLEEAVRKANGKLG-KPE 371
+ + E +A + + + + + + +++ LG
Sbjct: 285 MTDVF---ETTASELGGKAEVTVEQSYPGFKINDNEA------VVKIAQESARNLGLSAN 335
Query: 372 IFPAS--TDARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428
+ +D G+P++ +H NE + IIK
Sbjct: 336 TIISGGGSDGSIINTFGIPSVILGVGYEK----IHTTNERMPIKSLNLLASQVLEIIKIV 391
Query: 429 A 429
A
Sbjct: 392 A 392
|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A Length = 377 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 7e-20
Identities = 66/363 (18%), Positives = 127/363 (34%), Gaps = 73/363 (20%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P I HTDVVP+ + ++WS PF A + G ++ RG+ DMK + A
Sbjct: 60 PVIAFAGHTDVVPTGDENQWSSPPFSAEII-DGMLYGRGAADMKGSLAA----MIVAAEE 114
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAS--TTEDY- 202
+ ++ L DEE DG ++ + + + ++
Sbjct: 115 YVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMAR----DEKITYCMVGEPSSAKNL 170
Query: 203 --RAFYAERCPWWLVIKARGAPGHGA--KLYDN--SAMENLFKSIESVR------RFRAS 250
R + +G GH A L +N + + + + F +
Sbjct: 171 GDVVKNGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDKGNEFFPPT 230
Query: 251 QFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE 310
++ +++ AGT N+ P+E F++R E ++
Sbjct: 231 SL-----------QIANIH-----AGTG-----SNNVIPAELYIQFNLRYCTEVTDEIIK 269
Query: 311 RRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKP 370
+++ E N+ + + S G+P LT + + A+ + G P
Sbjct: 270 QKVAEML--EKHNLKYRIEWNLS-----GKPFLTK---PGKLLDSITSAIEETIGI--TP 317
Query: 371 EIFPAST-----DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESII 425
+ T D R+ G + F P+ +T +H NE ++ + K +IY ++
Sbjct: 318 KA---ETGGGTSDGRFIALMGAEVVEFGPLNST---IHKVNECVSVEDLGKCGEIYHKML 371
Query: 426 KAY 428
Sbjct: 372 VNL 374
|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 Length = 393 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 73/360 (20%), Positives = 121/360 (33%), Gaps = 67/360 (18%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMK----CVGMQYLEAIRR 145
P + HTDVVP+ KW PF G ++ RG+ DMK C ++ A R
Sbjct: 63 PVVCFAGHTDVVPTGPVEKWDSPPFEPAER-DGRLYGRGAADMKTSIAC----FVTACER 117
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVG-IVLDE--GLASTTEDY 202
A S+ L DEE DG K D + ++ E + +
Sbjct: 118 FVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMI 177
Query: 203 RAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262
+ L +K G GH A Y + A+ + ++ +D E
Sbjct: 178 KNGRRGSLSGNLTVK--GKQGHIA--YPHLAINPVHTFAPALLELTQEVWD--------E 225
Query: 263 G---------EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRI 313
G ++ ++N GT N+ P E F+ R + L++R+
Sbjct: 226 GNEYFPPTSFQISNIN-----GGTG-----ATNVIPGELNVKFNFRFSTESTEAGLKQRV 275
Query: 314 VEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIF 373
++ G+P LT + ++ A+ + G + E+
Sbjct: 276 HAILDKHGVQYDLQWSCS-------GQPFLTQ---AGKLTDVARAAIAETCGI--EAEL- 322
Query: 374 PAST-----DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428
ST D R+ + I P T +H NE + + K +YE I+
Sbjct: 323 --STTGGTSDGRFIKAMAQELIELGPSNAT---IHQINENVRLNDIPKLSAVYEGILVRL 377
|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} Length = 373 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 68/424 (16%), Positives = 130/424 (30%), Gaps = 79/424 (18%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLILLKW 83
+ ++ F +Q+D+ + + K + + L +E + ++
Sbjct: 6 ERLVNEFMELVQVDS-ETKFEAEIC-KVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTL 63
Query: 84 PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQY 139
P + + +I SH D V P G I + G+ D K
Sbjct: 64 PATKDGVDTIYFTSHMDTVV--PGNGIKPSIK-----DGYIVSDGTTILGADDKAGLASM 116
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLD-EGLAST 198
EAIR LK P ++ EE G GA+ D + G LD +G
Sbjct: 117 FEAIRVLKEKNI-PHGTIEFIITVGEESGLV-GAKAL-DRERITA-KYGYALDSDGKVGE 172
Query: 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMEN-LFKSIESVRRFRASQFDLVKA 257
A + RG H + + + + +++ + + D
Sbjct: 173 IV-VAAPTQ----AKVNAIIRGKTAHAGVAPEK--GVSAITIAAKAIAKMPLGRID---- 221
Query: 258 GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317
+ N+ + GT N+ + + R E +E ++
Sbjct: 222 ------SETTANIGRFEGGTQ------TNIVCDHVQIFAEARS---LINEKMEAQV---- 262
Query: 318 APASRNMTFEFKQRASLHDKFGRPI-LTATDS-------SNPWWNLLEEAVRKANGKLG- 368
M F+ A + G + + E ++A K+G
Sbjct: 263 ----AKMKEAFETTA---KEMGGHADVEVNVMYPGFKFADGDH---VVEVAKRAAEKIGR 312
Query: 369 KPEIFPAS--TDARYFRERGLPAIGFSP-MANTPILLHDHNEFLNQAEYLKGIDIYESII 425
P + + +DA G+P + + +H NE + E K ++ +II
Sbjct: 313 TPSLHQSGGGSDANVIAGHGIPTVNLAVGYEE----IHTTNEKIPVEELAKTAELVVAII 368
Query: 426 KAYA 429
+ A
Sbjct: 369 EEVA 372
|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 6e-16
Identities = 75/449 (16%), Positives = 141/449 (31%), Gaps = 91/449 (20%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLILLK 82
+ +IERF Y++IDT S + + + + L E + + + + ++
Sbjct: 27 EELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTMDDNGYVMAT 86
Query: 83 WPGSNP-QLPSILLNSHTDVVPSEPSK--------------------------WSHHPFG 115
P + +P I +H D K P
Sbjct: 87 LPANTDKDVPVIGFLAHLDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPEL 146
Query: 116 AHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHD 171
I G+ D K + + A+ L + + ++F PDEEIG
Sbjct: 147 PSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIGR-- 204
Query: 172 GAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH--GAKLY 229
G F D F + + ++D G E Y +F A + G H AK
Sbjct: 205 GPAHF-DVEAFGA-SFAYMMDGGPLGGLE-YESFNAAGA----KLTFNGTNTHPGTAKNK 257
Query: 230 DNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
+A + + + A ++ G + +N
Sbjct: 258 MRNATKLAMEFNGHLPVEEAPEYTEGYEGF--------------------YHLLSLNGDV 297
Query: 290 SEAEAGFDIRVPPTTDAESLERR------IVEEWAPASRNMTFEFKQRASLHDKFGRPIL 343
+++A + IR D ++ E R IV++ + ++D++ +L
Sbjct: 298 EQSKAYYIIR---DFDRKNFEARKNTIENIVKQMQEKYGQDAVVLE----MNDQY-YNML 349
Query: 344 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPA--STDARYFRERGLPAIGFSP-MANTPI 400
+ ++ EA++ N +P I P TD GLP N
Sbjct: 350 EKIEPVREIVDIAYEAMKSLN---IEPNIHPIRGGTDGSQLSYMGLPTPNIFTGGEN--- 403
Query: 401 LLHDHNEFLNQAEYLKGIDIYESIIKAYA 429
H E+++ K + + I + +
Sbjct: 404 -YHGKFEYVSVDVMEKAVQVIIEIARRFE 431
|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A Length = 417 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 6e-16
Identities = 86/447 (19%), Positives = 141/447 (31%), Gaps = 80/447 (17%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYT-------NASKFILAQAEALSLESQTLEFAKNKPLI 79
D ++ERF Y+ +DT S+ + + Q E + L + TL +
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGT---L 58
Query: 80 LLKWPGSNP-QLPSILLNSHTDVVPSEPSK-------------------------WSHHP 113
+ P + +P+I SH D P K P
Sbjct: 59 MATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFP 118
Query: 114 FGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169
L Q I G D K + + A+ LK + P + ++F PDEE+G
Sbjct: 119 VLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK 177
Query: 170 HDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLY 229
GA+ F D F + +D G E + F A + IK G H
Sbjct: 178 --GAKHF-DVEAFGA-QWAYTVDGGGVGELE-FENFNA----ASVNIKIVGNNVHPG--- 225
Query: 230 DNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289
+A + ++ R A V A E F + M
Sbjct: 226 --TAKGVMVNALSLAARIHA----EVPADEAPET--TEGYEGFYHLAS-------MKGTV 270
Query: 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSS 349
AE + IR E+ +R+++E + + + + D +
Sbjct: 271 DRAEMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIED-SYYNMREKVVEH 329
Query: 350 NPWWNLLEEAVRKANGKLGKPEIFPAS--TDARYFRERGLPAIGFSP-MANTPILLHDHN 406
++ ++A+R + PE+ P TD GLP N H +
Sbjct: 330 PHILDIAQQAMRDCH---ITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYN----YHGKH 382
Query: 407 EFLNQAEYLKGIDIYESIIKAYASYVQ 433
EF+ K + + I + A Q
Sbjct: 383 EFVTLEGMEKAVQVIVRIAELTAKRGQ 409
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 10/146 (6%)
Query: 28 DSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS 86
E R + + + ++ + + E + E P ++ + S
Sbjct: 44 QHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDESYTA-PFVMAHFKSS 102
Query: 87 NPQLPSILLNSHTDVVPSEPSK-WSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
P +++ +H D VP++ + W+ PF + G ++ RG D K L A+R+
Sbjct: 103 RPDAKTLIFYNHYDTVPADGDQVWTEDPFTLSVR-NGFMYGRGVDDDKGHITARLSALRK 161
Query: 146 LKASGFQ-PVRSVYLSFVPD--EEIG 168
PV +SF+ + EE
Sbjct: 162 YMQHHDDLPVN---ISFIMEGAEESA 184
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} Length = 481 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 21/147 (14%)
Query: 289 PSEAEAGFDIRVPPTTDAESLERRI---VEEWAPASRNMTFEFKQRASLHDKFGRPILTA 345
P+EA A ++R+ P + + +I +++ + + + +
Sbjct: 348 PAEASAKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELYYTLGEMSYR----------- 396
Query: 346 TDSSNPWWNLLEEAVRKANGKLGKPEIFPAS----TDARYFRERGLPAIGFSPMANTPIL 401
+D S P + E +K + + P + F +P + F + N
Sbjct: 397 SDMSAPAILNVIELAKKFYPQ--GVSVLPTTAGTGPMHTVFDALEVPMVAF-GLGNANSR 453
Query: 402 LHDHNEFLNQAEYLKGIDIYESIIKAY 428
H +E + A+Y I++ E +I++Y
Sbjct: 454 DHGGDENVRIADYYTHIELVEELIRSY 480
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS---LESQTLEFAKNK------- 76
+ I+ Y++I P+ D + QA +S + +
Sbjct: 17 QEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNR 76
Query: 77 -PLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKC 134
PL+ ++ PG ++LL H D P HP+ L G ++ RG D
Sbjct: 77 TPLLFMEIPG--QIDDTVLLYGHLDKQPEMSGWSDDLHPWKPVLK-NGLLYGRGGADDGY 133
Query: 135 VGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
L AIR L+ G R + + EE G + +
Sbjct: 134 SAYASLTAIRALEQQGLPYPRCILI-IEACEESGS-YDLPFYIELL 177
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 35/170 (20%)
Query: 276 GTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLE---RRIVEEWAPASRNMTFEFKQRA 332
G P+ N+ +R+PP D E+ + + + P + + F+
Sbjct: 319 GFPAIADAG-NVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKI---- 373
Query: 333 SLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERG-LPAIG 391
G A S+ EA K A Y E G +P +
Sbjct: 374 ---QNGGSKGWNAPLLSDWLAKAASEASMTYYDK-----------PAAYMGEGGTIPFMS 419
Query: 392 F-------SPMANTPILLHD---H--NEFLNQAEYLKGIDIYESIIKAYA 429
+ T +L H NEFL+ K ++ +++
Sbjct: 420 MLGEQFPKAQFMITGVLGPHSNAHGPNEFLHLDMVKKLTSCVSYVLYSFS 469
|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A Length = 268 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 91 PSILLNSHTDVVPS-EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
P + HTDVVP+ S+W PF + G + RG+ DMK + A+ R A
Sbjct: 63 PLFVFAGHTDVVPAGPLSQWHTPPFEPTVI-DGFLHGRGAADMKGSLACMIVAVERFIAE 121
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEK 175
S+ DEE +G +
Sbjct: 122 HPDHQGSIGFLITSDEEGPFINGTVR 147
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 24/172 (13%)
Query: 28 DSIIERFRAYLQIDT--SQPNPDYTN----ASKFILAQAEALSLESQTLEFAKNKPLILL 81
D ++ + ++ I++ QP P + + L +++ +
Sbjct: 25 DEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQ 84
Query: 82 KWPG---------SNPQLPSILLNSHTDVVPSEPS-KWSHHPFGAHLDSQGNIFARGSQD 131
P S+P ++ H DV P++ W P+ G ++ RG+ D
Sbjct: 85 SLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV-DGKLYGRGATD 143
Query: 132 MKCVGMQYLEAIRRLKASGFQ-PVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
K + ++ A+ +A PV + F+ + EE G E+ +
Sbjct: 144 NKGPVLAWINAVSAFRALEQDLPVN---IKFIIEGMEEAGS-VALEELVEKE 191
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} Length = 485 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 289 PSEAEAGFDIRVPPTTDAE----SLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILT 344
P F IR+ P + + R + + ++ + + P +
Sbjct: 344 PGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLG-----LHPWI- 397
Query: 345 ATDSSNPWWNLLEEAVRKANGKLGKPEIFPAS-TDARYFRER-GLPAIGFSPMANTPILL 402
+ + + + A+R G ++ A+ F+E + P+
Sbjct: 398 -ANIDDTQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVVLI-PLGAVDDGE 455
Query: 403 HDHNEFLNQAEYLKGIDIYESIIKAYA 429
H NE +N+ Y++G ++ + A
Sbjct: 456 HSQNEKINRWNYIEGTKLFAAFFLEMA 482
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 38/170 (22%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 28 DSIIERFRAYLQIDT--SQP--NPDYTNASKFILAQAEALSLESQTLEFAKNK------- 76
D +++ ++ I + + P + + A + L + ++ K K
Sbjct: 20 DRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEI 79
Query: 77 --PLILLKWPGSNPQLPSILLNSHTDVVPSEPS-KWSHHPFGAHLDSQGNIFARGSQDMK 133
P ILL GS+PQ ++ + H DV P+ W PF +G ++ RGS D K
Sbjct: 80 PLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVER-EGKLYGRGSTDDK 138
Query: 134 CVGMQYLEAIRRLKASGFQ-PVRSVYLSFVPD--EEIGGHDGAEKFADSH 180
++ A+ + +G + PV L F + EE G +G ++ +
Sbjct: 139 GPVAGWMNALEAYQKTGQEIPVN---LRFCLEGMEESGS-EGLDELIFAQ 184
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* Length = 479 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 14/147 (9%)
Query: 289 PSEAEAGFDIRVPPTTDAE----SLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILT 344
P + F IR+ P E + + +++A F+ G+P +
Sbjct: 337 PRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHG-----GKPWV- 390
Query: 345 ATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST-DARYFRER-GLPAIGFSPMANTPILL 402
+D ++P + A++ G S F+E G + P+ +
Sbjct: 391 -SDFNHPHYQAGRRALKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLL-PVGSADDGA 448
Query: 403 HDHNEFLNQAEYLKGIDIYESIIKAYA 429
H NE LN+ Y++G + + + +
Sbjct: 449 HSQNEKLNRLNYIEGTKMLAAYLYEVS 475
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... Length = 299 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 27/172 (15%)
Query: 32 ERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEFAKNKPL------IL 80
+ + S N AS +I ++ +ALS + ++
Sbjct: 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVV 79
Query: 81 LKWPGSNPQLPSILLNSHTD-VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQY 139
+ GS I++ H D + S ++ S P GA D+ G +
Sbjct: 80 MTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAP-GADDDASG-----------IAAV-- 125
Query: 140 LEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL 191
E IR L + FQP RS+ EE G G++ A+ + NV L
Sbjct: 126 TEVIRVLSENNFQPKRSIAFMAYAAEE-VGLRGSQDLANQYKSEGKNVVSAL 176
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 66/532 (12%), Positives = 140/532 (26%), Gaps = 183/532 (34%)
Query: 12 FVFYQLIIFSSPAKSDDSIIERFRAYLQIDTS----QPNPDYT-----NASKFILAQAEA 62
++ + +++ + R + YL++ + +P + + K +A +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDV 170
Query: 63 LSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQG 122
+ + LK S + +L + P + + D
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---------NWTSRSDHSS 221
Query: 123 NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRS-VYLSFVPDEEIGGHDGAEKFA---- 177
NI R ++ +RRL S + L V + + F
Sbjct: 222 NIKLR-IHSIQ-------AELRRLLKSKPYE-NCLLVLLNVQNAKA-----WNAFNLSCK 267
Query: 178 ------DSHVFNSLNVG----IVLDEGLASTTEDY-RAFYAERCPWWLVIKARGAP---- 222
V + L+ I LD + T D ++ + +L + + P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVL 323
Query: 223 -GH-------GAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLK 274
+ + D A + ++ D + +++ S+N
Sbjct: 324 TTNPRRLSIIAESIRDGLATWD---------NWKHVNCDKLTTIIES-----SLN----- 364
Query: 275 AGTPSPNGFVMNLQPSEAEAGF--------DIRVPPTT---------------DAESLER 311
L+P+E F +P L +
Sbjct: 365 -----------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 312 R-IVEEWAPASR----NMTFEFKQ----RASLHDKFGRPILTA---------TDSSNPWW 353
+VE+ S ++ E K +LH I+ D P+
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS----IVDHYNIPKTFDSDDLIPPYL 469
Query: 354 -----------------------------NL--LEEAVRKANGKLGKP-EIFPASTDARY 381
+ LE+ +R + I ++
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 382 FR----------ERGLPAIG-FSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422
++ ER + AI F P ++ + + L A + I+E
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A Length = 284 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 32/118 (27%)
Query: 114 FGAHLDSQG-------NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
GAHLDS N GS + LE + +G+QP + + ++ EE
Sbjct: 82 AGAHLDSVSSGAGINDN--GSGS-----AAV--LETALAVSRAGYQPDKHLRFAWWGAEE 132
Query: 167 IGGHDGAEKFADSH----------VFN-----SLNVGIVLDEGLASTTEDYRAFYAER 209
+G G++ + ++ N S N G + + + ++ ++A
Sbjct: 133 LGLI-GSKFYVNNLPSADRSKLAGYLNFDMIGSPNPGYFVYDDDPVIEKTFKNYFAGL 189
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 444 | |||
| 3pfo_A | 433 | Putative acetylornithine deacetylase; metal bindin | 100.0 | |
| 1vgy_A | 393 | Succinyl-diaminopimelate desuccinylase; structural | 100.0 | |
| 3isz_A | 377 | Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b | 100.0 | |
| 2f7v_A | 369 | Aectylcitrulline deacetylase; alpha/beta, hydrolas | 100.0 | |
| 3ct9_A | 356 | Acetylornithine deacetylase; NP_812461.1, A putati | 100.0 | |
| 3pfe_A | 472 | Succinyl-diaminopimelate desuccinylase; metal bind | 100.0 | |
| 1cg2_A | 393 | Carboxypeptidase G2; metallocarboxypeptidase, hydr | 100.0 | |
| 2pok_A | 481 | Peptidase, M20/M25/M40 family; M20 family peptidas | 100.0 | |
| 3dlj_A | 485 | Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti | 100.0 | |
| 3gb0_A | 373 | Peptidase T; NP_980509.1, aminopeptidase PEPT, pep | 100.0 | |
| 3rza_A | 396 | Tripeptidase; phosphorylase/hydrolase-like, struct | 100.0 | |
| 3tx8_A | 369 | Succinyl-diaminopimelate desuccinylase; peptidase, | 100.0 | |
| 2zog_A | 479 | Cytosolic non-specific dipeptidase; metallopeptida | 100.0 | |
| 2rb7_A | 364 | Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat | 100.0 | |
| 1xmb_A | 418 | IAA-amino acid hydrolase homolog 2; structural gen | 100.0 | |
| 3ife_A | 434 | Peptidase T; metallopeptidase, aminopeptidase, hyd | 100.0 | |
| 1ysj_A | 404 | Protein YXEP; M20 family peptidase, dinuclear meta | 100.0 | |
| 3io1_A | 445 | Aminobenzoyl-glutamate utilization protein; peptid | 100.0 | |
| 3khx_A | 492 | Putative dipeptidase sacol1801; DAPE, metallopepti | 100.0 | |
| 1fno_A | 417 | Peptidase T; metallo peptidase, protease, hydrolas | 100.0 | |
| 2qyv_A | 487 | XAA-His dipeptidase; YP_718209.1, structural genom | 100.0 | |
| 3mru_A | 490 | Aminoacyl-histidine dipeptidase; metalloprotease, | 100.0 | |
| 1lfw_A | 470 | PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac | 100.0 | |
| 3ram_A | 394 | HMRA protein; two-domain, catalytic (alpha-beta-al | 100.0 | |
| 3n5f_A | 408 | L-carbamoylase, N-carbamoyl-L-amino acid hydrolase | 100.0 | |
| 2v8h_A | 474 | Beta-alanine synthase; amidohydrolase, alpha and b | 100.0 | |
| 1z2l_A | 423 | Allantoate amidohydrolase; ALLC, purine cataboli a | 100.0 | |
| 3t68_A | 268 | Succinyl-diaminopimelate desuccinylase; DAPE, csgi | 100.0 | |
| 4h2k_A | 269 | Succinyl-diaminopimelate desuccinylase; DAPE, MCSG | 100.0 | |
| 1q7l_A | 198 | Aminoacylase-1; catalysis, enzyme dimerization, si | 100.0 | |
| 2fvg_A | 340 | Endoglucanase; TM1049, structural genomics, joint | 99.95 | |
| 2wyr_A | 332 | Cobalt-activated peptidase TET1; hydrolase, large | 99.93 | |
| 1vhe_A | 373 | Aminopeptidase/glucanase homolog; structural genom | 99.93 | |
| 2wzn_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 99.92 | |
| 2gre_A | 349 | Deblocking aminopeptidase; structural genomi prote | 99.91 | |
| 1y0y_A | 353 | FRV operon protein FRVX; aminopeptidase, PDZ, hydr | 99.91 | |
| 1vho_A | 346 | Endoglucanase; structural genomics, unknown functi | 99.87 | |
| 3cpx_A | 321 | Aminopeptidase, M42 family; YP_676701.1, putative | 99.87 | |
| 1ylo_A | 348 | Hypothetical protein SF2450; structural genomics, | 99.86 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 99.8 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 99.79 | |
| 3kl9_A | 355 | PEPA, glutamyl aminopeptidase; tetrahedral aminope | 99.76 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 99.76 | |
| 3gux_A | 314 | Putative Zn-dependent exopeptidase; aminopeptidase | 99.75 | |
| 2afw_A | 329 | Glutaminyl-peptide cyclotransferase; alpha-beta pr | 99.67 | |
| 2vpu_A | 354 | TET3, 354AA long hypothetical operon protein FRV; | 99.65 | |
| 4fuu_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase li | 99.54 | |
| 3pb6_X | 330 | Glutaminyl-peptide cyclotransferase-like protein; | 99.51 | |
| 3isx_A | 343 | Endoglucanase; TM1050, structural genomics, joint | 99.49 | |
| 1q7l_B | 88 | Aminoacylase-1; catalysis, enzyme dimerization, si | 99.48 | |
| 4f9u_A | 312 | CG32412; alpha/beta hydrolase, PGlu formation, PE, | 99.47 | |
| 4fai_A | 330 | CG5976, isoform B; alpha/beta hydrolase, PGlu form | 99.45 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 99.08 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 99.03 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 98.61 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 98.59 | |
| 3k9t_A | 435 | Putative peptidase; structural genomics, joint cen | 96.59 | |
| 3vat_A | 496 | Dnpep, aspartyl aminopeptidase; alpha-beta-alpha s | 95.25 | |
| 4eme_A | 571 | M18 aspartyl aminopeptidase; dnpep/M18/aminopeptid | 95.04 | |
| 2glf_A | 450 | Probable M18-family aminopeptidase 1; putative, NY | 95.04 | |
| 1y7e_A | 458 | Probable M18-family aminopeptidase 1; aminopeptida | 94.96 | |
| 2ijz_A | 428 | Probable M18-family aminopeptidase 2; putative ami | 94.2 | |
| 2glj_A | 461 | Probable M18-family aminopeptidase 1; aminopeptida | 92.9 | |
| 1tkj_A | 284 | Aminopeptidase, SGAP; double-zinc metalloproteinas | 92.7 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 88.19 | |
| 2glf_A | 450 | Probable M18-family aminopeptidase 1; putative, NY | 87.26 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 86.95 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 86.57 | |
| 3kzw_A | 515 | Cytosol aminopeptidase; hydrolase, manganese bindi | 85.99 | |
| 3pei_A | 486 | Cytosol aminopeptidase; structural genomics, cente | 85.74 | |
| 4efd_A | 522 | Aminopeptidase; structural genomics, structural ge | 84.28 | |
| 2glj_A | 461 | Probable M18-family aminopeptidase 1; aminopeptida | 84.21 | |
| 1rtq_A | 299 | Bacterial leucyl aminopeptidase; bimetallic, zinc, | 84.13 | |
| 3h8g_F | 497 | Cytosol aminopeptidase; hydrolase, manganese, meta | 83.98 | |
| 3tc8_A | 309 | Leucine aminopeptidase; phosphorylase/hydrolase-li | 83.96 | |
| 1y7e_A | 458 | Probable M18-family aminopeptidase 1; aminopeptida | 83.62 | |
| 1gyt_A | 503 | Cytosol aminopeptidase; hydrolase, DNA recombinati | 81.17 | |
| 1lam_A | 484 | Leucine aminopeptidase; exopeptidase, metallopepti | 80.27 |
| >3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-56 Score=448.17 Aligned_cols=380 Identities=17% Similarity=0.239 Sum_probs=312.9
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee------------------cCCCCeEEEEe
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF------------------AKNKPLILLKW 83 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~------------------~~~~~nl~~~~ 83 (444)
..+.+.+++++++++|+++||+| ++|.++++||.++|+++|++++.++. ..+++|+++.+
T Consensus 20 ~i~~~~~~~~~~l~~l~~~ps~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~via~~ 97 (433)
T 3pfo_A 20 AVDRNFNDQVAFLQRMVQFRSVR--GEEAPQQEWLAQQFADRGYKVDTFSLADVDIASHPKAAPMDTIDPAGSMQVVATA 97 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHHHTTCEEEEEETGGGTGGGSTTCCCCTTCCGGGCEEEEEEE
T ss_pred HHHhhHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHCCCceEEEecchhhhhccccccccccccCCCCcEEEEEE
Confidence 34556789999999999999996 78889999999999999999886542 23578999999
Q ss_pred cCCCCCCCcEEEEeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEee
Q 013368 84 PGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFV 162 (444)
Q Consensus 84 ~g~~~~~~~i~l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~ 162 (444)
+|.+ +.|+|+|+|||||||.++ +.|+++||+++++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+
T Consensus 98 ~g~~-~~~~v~l~aH~D~vp~~~~~~w~~~pf~~~~~-~g~~~g~G~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~ 175 (433)
T 3pfo_A 98 DSDG-KGRSLILQGHIDVVPEGPVDLWSDPPYEAKVR-DGWMIGRGAQDMKGGVSAMIFALDAIRTAGYAPDARVHVQTV 175 (433)
T ss_dssp CCCC-CSCCEEEEEECCBCCCCCGGGCSSCTTTCCEE-TTEEECTTTTTTHHHHHHHHHHHHHHHHTTEEESSCEEEEEE
T ss_pred ecCC-CCCEEEEEcccCCcCCCCcccCCCCCCCcEEE-CCEEEecchhhhhHHHHHHHHHHHHHHHcCCCCCccEEEEEE
Confidence 8743 458999999999999986 7999999999997 999999999999999999999999999988778899999999
Q ss_pred cCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHH
Q 013368 163 PDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSI 241 (444)
Q Consensus 163 ~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i 241 (444)
++||.|+ .|++.+++.+. +.|++++.+ |+. ..++.+.+|..+++|+++|+++|+|.|+.+ ||+..+++++
T Consensus 176 ~~EE~g~-~G~~~~~~~~~--~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~i 246 (433)
T 3pfo_A 176 TEEESTG-NGALSTLMRGY--RADACLIPE-----PTG-HTLTRAQVGAVWFRLRVRGTPVHVAYSETGTSAILSAMHLI 246 (433)
T ss_dssp SCTTTTC-HHHHHHHHTTC--CCSEEEECC-----CCS-SCEEEEECEEEEEEEEEECCCCBGGGGGGSCCHHHHHHHHH
T ss_pred ecCccCC-hhHHHHHhcCC--CCCEEEEeC-----CCC-CceEEecceEEEEEEEEEcCCCccCCCCcCcCHHHHHHHHH
Confidence 9999886 69999988653 468888775 543 478899999999999999999999999888 9999999999
Q ss_pred HHHHhchhhhhHHHHhch--hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc
Q 013368 242 ESVRRFRASQFDLVKAGL--KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP 319 (444)
Q Consensus 242 ~~l~~l~~~~~~~~~~~~--~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~ 319 (444)
..|+.+.....+.....+ ......++++++.+++|. ..|+||++|++.+++|+.+.++.+++.++|+++++.
T Consensus 247 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~ 320 (433)
T 3pfo_A 247 RAFEEYTKELNAQAVRDPWFGQVKNPIKFNVGIIKGGD------WASSTAAWCELDCRLGLLTGDTPQEAMRGIEKCLAD 320 (433)
T ss_dssp HHHHHHHHHHHHHGGGCTTTTTSSSCSCEEEEEEEECS------CTTBCCCEEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCccccccCCCceEEeeeEECCC------CCcccCcEEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999876542211000000 001224589999999997 899999999999999999999999999999988764
Q ss_pred CC--C------CceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh-cCCCeE
Q 013368 320 AS--R------NMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE-RGLPAI 390 (444)
Q Consensus 320 ~~--~------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~-~gip~v 390 (444)
.. . .+++++.. ...|+. ..+.++++++.+.+++++..+..+.....+|++|+++|.+ .|+|++
T Consensus 321 ~~~~~~~~~~~~~~v~~~~-------~~~p~~-~~~~d~~~~~~~~~a~~~~~G~~~~~~~~~g~~D~~~~~~~~giP~v 392 (433)
T 3pfo_A 321 AQATDSFLSENPAELVWSG-------FQADPA-VCEPGGVAEDVLTAAHKAAFNAPLDARLSTAVNDTRYYSVDYGIPAL 392 (433)
T ss_dssp HHTTCHHHHHSCCEEEEEE-------EEECCE-ECCTTCHHHHHHHHHHHHHHSSCCCEEEESSCCTHHHHHHTTCCCEE
T ss_pred HhhhCcccccCCeEEEEec-------ccCCcc-cCCCCCHHHHHHHHHHHHHhCCCCceeeeeeeccHHHHHhhCCCCEE
Confidence 21 1 24444431 123333 3556899999999999986554335566789999999987 599999
Q ss_pred EEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 391 GFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 391 ~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.|||+.. .+|++||+++++++.+++++|+.++.++++.
T Consensus 393 ~~Gp~~~---~~H~~~E~i~~~~l~~~~~~~~~~i~~~~~~ 430 (433)
T 3pfo_A 393 CYGPYGQ---GPHAFDERIDLESLRKTTLSIALFVAEWCGL 430 (433)
T ss_dssp ECCCCEE---CTTSTTCEEEHHHHHHHHHHHHHHHHHHHCE
T ss_pred EECCCCc---cCCCCCceEEHHHHHHHHHHHHHHHHHHhcc
Confidence 9999843 6999999999999999999999999999865
|
| >1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-55 Score=435.13 Aligned_cols=374 Identities=19% Similarity=0.274 Sum_probs=301.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
+.+++++++++|+++||+| ++|.++++||.++|+++|++++..+. ++.+|+++.+ |. +.|+|+|+|||||||.+
T Consensus 4 ~~~~~~~~l~~lv~~ps~s--~~e~~~~~~l~~~l~~~G~~~~~~~~-~~~~nv~a~~-g~--~~~~i~l~~H~D~Vp~~ 77 (393)
T 1vgy_A 4 TETQSLELAKELISRPSVT--PDDRDCQKLMAERLHKIGFAAEEMHF-GNTKNIWLRR-GT--KAPVVCFAGHTDVVPTG 77 (393)
T ss_dssp CCSHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCB-TTBCEEEEEE-CS--SSSEEEEEEECCBCCCC
T ss_pred chHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHHHcCCcEEEEec-CCCcEEEEEE-CC--CCCEEEEEcccCCcCCC
Confidence 4578999999999999997 67788999999999999998876543 2567999998 64 35899999999999998
Q ss_pred C-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccc-
Q 013368 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN- 183 (444)
Q Consensus 106 ~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~- 183 (444)
+ +.|+++||++.++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.++..|++.+++.....
T Consensus 78 ~~~~w~~~Pf~~~~~-~g~l~grG~~D~k~~~aa~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~Ga~~~~~~~~~~~ 156 (393)
T 1vgy_A 78 PVEKWDSPPFEPAER-DGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARD 156 (393)
T ss_dssp CGGGSSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTT
T ss_pred CcccCCCCCCceEEE-CCEEEecCcccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCcCCHHHHHHHHHhcC
Confidence 6 7899999999997 999999999999999999999999999887778999999999999986557999988754322
Q ss_pred -cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhc
Q 013368 184 -SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKA 261 (444)
Q Consensus 184 -~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~ 261 (444)
..|++++.+.+...+.+ ..+..+.+|..+++|+++|+++|+|.|+.+ ||+..+++++..|..+.... ...
T Consensus 157 ~~~d~~i~~e~~~~~~~g-~~i~~g~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~a~~i~~l~~~~~~~-------~~~ 228 (393)
T 1vgy_A 157 ELIDYCIVGEPTAVDKLG-DMIKNGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE-------GNE 228 (393)
T ss_dssp CCEEEEEECCCCBSSSTT-SEEECEECEEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCC-------CCS
T ss_pred cCCCEEEEeCCCCcccCC-ceeEEeeeeEEEEEEEEEccCcccCCCccCCCHHHHHHHHHHHhhcccccc-------ccc
Confidence 24666666543221211 236778899999999999999999999988 99999999999998753210 001
Q ss_pred cCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCC
Q 013368 262 EGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRP 341 (444)
Q Consensus 262 ~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (444)
....++++++.+++|.. +.|+||++|++.+|+|+.+.++.+++.++|+++++.. +++++++.. ....|
T Consensus 229 ~~~~~~~~v~~i~gG~~-----~~NviP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~-----~~~~p 296 (393)
T 1vgy_A 229 YFPPTSFQISNINGGTG-----ATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKH--GVQYDLQWS-----CSGQP 296 (393)
T ss_dssp SCCCCEEEEEEEEECCS-----CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEE-----EEECC
T ss_pred ccCCCeEEEeeEcCCCC-----CCcccCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHh--CCCeEEEEe-----cCCCc
Confidence 11335889999998852 6899999999999999999999999999999988743 334444421 11233
Q ss_pred CccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 342 ILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 342 ~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
. ..+++++++.+.+++++..+..+.+...+|++|++++...++|++.|||+.. .+|++||+++++++.+++++|
T Consensus 297 ~---~~~~~~l~~~~~~~~~~~~g~~~~~~~~~g~~D~~~~~~~~~P~v~~Gp~~~---~~H~~~E~i~~~~l~~~~~~~ 370 (393)
T 1vgy_A 297 F---LTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQELIELGPSNA---TIHQINENVRLNDIPKLSAVY 370 (393)
T ss_dssp E---ECCSSHHHHHHHHHHHHHHSSCCEEECCSCCCTHHHHGGGEEEEEECCSBCT---TTTSTTCEEETTHHHHHHHHH
T ss_pred c---cCCCcHHHHHHHHHHHHHcCCCceEecCCccchHHHHHhCCCCEEEECCCCC---CCCCCCCceeHHHHHHHHHHH
Confidence 3 2347899999999999985544344456688999999988999999999764 599999999999999999999
Q ss_pred HHHHHHHHccc
Q 013368 422 ESIIKAYASYV 432 (444)
Q Consensus 422 ~~~l~~l~~~~ 432 (444)
+.++.+++...
T Consensus 371 ~~~l~~l~~~~ 381 (393)
T 1vgy_A 371 EGILVRLLAGN 381 (393)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHhccC
Confidence 99999997654
|
| >3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-54 Score=426.78 Aligned_cols=370 Identities=19% Similarity=0.280 Sum_probs=296.0
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC-
Q 013368 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP- 106 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~- 106 (444)
+++++++++|+++||+| ++|.+++++|+++|+++|++++..+.. +.+|+++.+ |. +.|+|+|+||||+||.++
T Consensus 3 ~~~~~~~~~L~~~ps~s--~~e~~~~~~l~~~l~~~g~~~~~~~~~-~~~n~~a~~-g~--~~~~i~l~aH~D~vp~~~~ 76 (377)
T 3isz_A 3 EKVVSLAQDLIRRPSIS--PNDEGCQQIIAERLEKLGFQIEWMPFN-DTLNLWAKH-GT--SEPVIAFAGHTDVVPTGDE 76 (377)
T ss_dssp HHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHHTTCEEEECCBT-TBCEEEEEE-ES--SSCEEEEEEECCBCCCCCG
T ss_pred hHHHHHHHHHhcCCCCC--CChhhHHHHHHHHHHHCCCceEEeecC-CCceEEEEe-CC--CCCEEEEeccccccCCCCc
Confidence 67899999999999996 678889999999999999998865433 567999988 54 358999999999999987
Q ss_pred CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccc--cc
Q 013368 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF--NS 184 (444)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~--~~ 184 (444)
+.|+++||++.++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.++..|++.+++.... ..
T Consensus 77 ~~w~~~pf~~~~~-~g~~~g~G~~D~k~g~~~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~~~~~G~~~~~~~~~~~~~~ 155 (377)
T 3isz_A 77 NQWSSPPFSAEII-DGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDEK 155 (377)
T ss_dssp GGCSSCTTSCCEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCSSSHHHHHHHHHHTTCC
T ss_pred ccCCCCCCCcEEE-CCEEEeCChhhhhHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccccCccccHHHHHHHHHhcCCC
Confidence 7899999999997 99999999999999999999999999988777899999999999998754599998875322 23
Q ss_pred CceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccC
Q 013368 185 LNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (444)
Q Consensus 185 ~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~ 263 (444)
.|++++.+.....+.+ ..+..+.+|..+++++++|+++|+|.|+.+ ||+..+++++.+|+.+.... .....
T Consensus 156 ~d~~~~~e~~~~~~~g-~~i~~g~~g~~~~~i~~~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~~~~-------~~~~~ 227 (377)
T 3isz_A 156 ITYCMVGEPSSAKNLG-DVVKNGRRGSITGNLYIQGIQGHVAYPHLAENPIHKAALFLQELTTYQWDK-------GNEFF 227 (377)
T ss_dssp CCEEEECCCCBSSSTT-SEEEEEECEEEEEEEEEECC-------CGGGCHHHHHHHHHHHHHHCCCCC-------CCSSS
T ss_pred CCEEEEcCCCCcccCC-ceEEEEcceEEEEEEEEEccccccCCCccCcCHHHHHHHHHHHHHhccccc-------ccccc
Confidence 5766665432211211 236788999999999999999999999988 99999999999998653210 00112
Q ss_pred CceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCc
Q 013368 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPIL 343 (444)
Q Consensus 264 ~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (444)
..++++++.+++|.. +.|+||++|++.+|+|+.+.++.+++.++|+++++. .+++++++.. ....|.
T Consensus 228 ~~~~~~v~~i~gg~~-----~~nvip~~~~~~~diR~~~~~~~~~i~~~i~~~~~~--~g~~~~i~~~-----~~~~p~- 294 (377)
T 3isz_A 228 PPTSLQIANIHAGTG-----SNNVIPAELYIQFNLRYCTEVTDEIIKQKVAEMLEK--HNLKYRIEWN-----LSGKPF- 294 (377)
T ss_dssp CCCEEEEEEEEECCS-----CSSCCCSEEEEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEE-----ECCCCE-
T ss_pred CCceeEEEEEECCCC-----CCcccCCceEEEEEEecCCCCCHHHHHHHHHHHHHH--cCCCeEEEEE-----ecCCCC-
Confidence 347899999998852 689999999999999999999999999999988864 3555555531 123333
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013368 344 TATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 423 (444)
Q Consensus 344 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~ 423 (444)
..+++++++.+.+++++..+..+.+...+|++|+++++..|+|++.|||+.. .+|++||+++++++.+++++|+.
T Consensus 295 --~~~~~~l~~~l~~a~~~~~g~~~~~~~~~g~tDa~~~~~~g~~~v~~Gp~~~---~~H~~~E~i~~~~l~~~~~i~~~ 369 (377)
T 3isz_A 295 --LTKPGKLLDSITSAIEETIGITPKAETGGGTSDGRFIALMGAEVVEFGPLNS---TIHKVNECVSVEDLGKCGEIYHK 369 (377)
T ss_dssp --ECCTTHHHHHHHHHHHHHHSCCCEEEECSSCCSHHHHHTTTCEEEECCSBCT---TTTSTTCEEEHHHHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHHHHhCCCCeeeccCcccHHHHHHHcCCCEEEECCCCC---cccCCCCcEEHHHHHHHHHHHHH
Confidence 2457899999999999964433244556789999999999999999999874 59999999999999999999999
Q ss_pred HHHHHHc
Q 013368 424 IIKAYAS 430 (444)
Q Consensus 424 ~l~~l~~ 430 (444)
++.+|+.
T Consensus 370 ~i~~ll~ 376 (377)
T 3isz_A 370 MLVNLLD 376 (377)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9998863
|
| >2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=419.85 Aligned_cols=357 Identities=20% Similarity=0.231 Sum_probs=289.1
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCC---ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEee
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNP---DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~---~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H 98 (444)
+.+.+.+++++++++|++|||+|+.+ +|.++++||.++|+ |++++..+...+++|+++ ++|. |+|+|++|
T Consensus 3 ~~~~~~~~~~~~l~~l~~ips~s~~~~~~~e~~~~~~l~~~l~--G~~~~~~~~~~~~~~~~a-~~g~----~~i~l~~H 75 (369)
T 2f7v_A 3 HMTDLLASTLEHLETLVSFDTRNPPRAIAAEGGIFDYLRAQLP--GFQVEVIDHGDGAVSLYA-VRGT----PKYLFNVH 75 (369)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCBTTTTCCCSSSHHHHHHHTTCT--TCEEEEEECSTTCEEEEE-EESC----CSEEEEEE
T ss_pred hhhhhhHHHHHHHHHHhCCCCcCCCCCCccHHHHHHHHHHHhC--CCceEEEEcCCCceEEEE-EcCC----CeEEEEee
Confidence 44556789999999999999998656 89999999999999 999887665445689999 8753 78999999
Q ss_pred cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc-CccccHHHHH
Q 013368 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI-GGHDGAEKFA 177 (444)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-g~~~G~~~~~ 177 (444)
|||||.++ .|+++||+++++ +|++||||++|||++++++|.+++. ++++|.|+|+++||. | ..|++.++
T Consensus 76 ~D~vp~~~-~w~~~pf~~~~~-~g~l~grG~~D~k~g~a~~l~a~~~-------~~~~v~~~~~~~EE~~g-~~G~~~~~ 145 (369)
T 2f7v_A 76 LDTVPDSP-HWSADPHVMRRT-EDRVIGLGVCDIKGAAAALVAAANA-------GDGDAAFLFSSDEEAND-PRCIAAFL 145 (369)
T ss_dssp CCBCCCCS-SCSSCTTSCEEC-SSEEECTTTTTTHHHHHHHHHHHTT-------CCCCEEEEEESCTTSSS-CCHHHHHH
T ss_pred ecccCCCC-CCCCCCCCcEEE-CCEEEecccccccHHHHHHHHHHhc-------CCCCEEEEEEeCcccCC-CcCHHHHH
Confidence 99999975 799999999997 9999999999999999999999875 679999999999998 5 47999999
Q ss_pred hccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCC-CC-CHHHHHHHHHHHHHhchhhhhHHH
Q 013368 178 DSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLY-DN-SAMENLFKSIESVRRFRASQFDLV 255 (444)
Q Consensus 178 ~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~-~g-nai~~~~~~i~~l~~l~~~~~~~~ 255 (444)
+++. ..|++++++ |+. ..++.+.+|..+++|+++|+++|+|.|+ .+ ||+..+++++..|..+....
T Consensus 146 ~~~~--~~d~~i~~e-----~~~-~~i~~~~~g~~~~~i~v~G~~~Ha~~p~~~g~nAi~~~~~~i~~l~~~~~~~---- 213 (369)
T 2f7v_A 146 ARGL--PYDAVLVAE-----PTM-SEAVLAHRGISSVLMRFAGRAGHASGKQDPAASALHQAMRWGGKALDHVESL---- 213 (369)
T ss_dssp TTCC--CCSEEEECC-----CST-TCBBCCBCCEEEEEEEEECCCC------CTTSCHHHHHHHHHHHHHHHHHHT----
T ss_pred hcCC--CCCEEEECC-----CCC-CcceeecCceEEEEEEEeeeCcccCCCCcCCCCHHHHHHHHHHHHHhhhhhh----
Confidence 8754 468777764 443 5688899999999999999999999998 77 99999999999998654211
Q ss_pred Hhc--hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeeccc
Q 013368 256 KAG--LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRAS 333 (444)
Q Consensus 256 ~~~--~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 333 (444)
... ....+ ++++++.+++|. ..|+||++|++.+|+|+.+.++.+++.++|+++++.. +++++++..
T Consensus 214 ~~~~~~~~~~--~~~~vg~i~gG~------~~NviP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~-- 281 (369)
T 2f7v_A 214 AHARFGGLTG--LRFNIGRVDGGI------KANMIAPAAELRFGFRPLPSMDVDGLLATFAGFADPA--AAHFEETFR-- 281 (369)
T ss_dssp TTCEETTEES--CEEEEEEEEECS------STTSCCSEEEEEEEEECCTTCCHHHHHHHHHHTCSSC--CSEEEEEEE--
T ss_pred cccccCcccC--CceEEEEeecCC------CCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHHHHh--cCceEEEec--
Confidence 000 00111 689999999997 8999999999999999999999999999999888633 356665531
Q ss_pred ccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013368 334 LHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 413 (444)
Q Consensus 334 ~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~ 413 (444)
....|++ ..+. +++++.+.+++++..+..+. ....|++|+++|...|+|++.|||+... .+|++||++++++
T Consensus 282 ---~~~~~~~-~~~~-~~l~~~~~~a~~~~~g~~~~-~~~~g~~D~~~~~~~g~p~v~~Gpg~~~--~~H~~~E~~~~~~ 353 (369)
T 2f7v_A 282 ---GPSLPSG-DIAR-AEERRLAARDVADALDLPIG-NAVDFWTEASLFSAGGYTALVYGPGDIA--QAHTADEFVTLAQ 353 (369)
T ss_dssp ---ECCBSCS-SHHH-HHHHHHHHHHHHHHTTCCBC-CCBSSCCTHHHHHHTTCCEEECCSSCGG--GTTCTTCEEEHHH
T ss_pred ---cCCCCcc-CCCC-CHHHHHHHHHHHHhhCCCCC-ccccccCcHHHHhhCCCCEEEECCCCcc--ccCCCCceEEHHH
Confidence 0133443 1333 89999999999988654323 3467899999999999999999998643 6999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 013368 414 YLKGIDIYESIIKA 427 (444)
Q Consensus 414 l~~~~~~~~~~l~~ 427 (444)
+.+++++|+.++.+
T Consensus 354 l~~~~~~~~~~~~~ 367 (369)
T 2f7v_A 354 LQRYVESVNRIING 367 (369)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998763
|
| >3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-53 Score=414.74 Aligned_cols=345 Identities=21% Similarity=0.282 Sum_probs=281.7
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~ 104 (444)
+..+++++++++|+++||+| ++|.++++||.++|+++|++++.. .+|++++++|.+++.|+|+|.|||||||.
T Consensus 8 ~~~~~~~~~~~~l~~~ps~s--~~e~~~~~~l~~~l~~~g~~~~~~-----~~nv~a~~~g~~~~~~~i~l~aH~D~vp~ 80 (356)
T 3ct9_A 8 TMTAEAVSLLKSLISIPSIS--REETQAADFLQNYIEAEGMQTGRK-----GNNVWCLSPMFDLKKPTILLNSHIDTVKP 80 (356)
T ss_dssp HHHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHHHTTCCEEEE-----TTEEEEECSSCCTTSCEEEEEEECCBCCC
T ss_pred HHHHHHHHHHHHHhcCCCCC--CChHHHHHHHHHHHHHCCCeEEEE-----eeeEEEEEecCCCCCCeEEEEccccccCC
Confidence 34578999999999999996 688899999999999999998754 55999999763333589999999999999
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc-CccccHHHHHhccccc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI-GGHDGAEKFADSHVFN 183 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~-g~~~G~~~~~~~~~~~ 183 (444)
++ .|+.+||++.++ +|++||||++|||++++++|.|++.|++.+ ++++|.|+|+++||. |+ .|++.+++++ .
T Consensus 81 ~~-~w~~~p~~~~~~-~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~~g~-~G~~~~~~~~--~ 153 (356)
T 3ct9_A 81 VN-GWRKDPFTPREE-NGKLYGLGSNDAGASVVSLLQVFLQLCRTS--QNYNLIYLASCEEEVSGK-EGIESVLPGL--P 153 (356)
T ss_dssp C--------CCCEEC-SSEEESTTTTTTHHHHHHHHHHHHHHTTSC--CSSEEEEEEECCGGGTCT-TTHHHHGGGS--C
T ss_pred CC-CCCCCCCccEEE-CCEEEecCcccchHHHHHHHHHHHHHHhcC--CCCCEEEEEEeCcccCCc-cCHHHHHhhC--C
Confidence 75 799999999997 999999999999999999999999999876 789999999999998 64 7999999875 2
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
+.|++++.+ |+. ..++.+.+|..+++|+++|+++|+|.| .| ||+..+++++..|+.+..... ...
T Consensus 154 ~~d~~i~~e-----p~~-~~i~~~~~G~~~~~i~~~G~~~Ha~~p-~g~nAi~~~~~~i~~l~~~~~~~~-------~~~ 219 (356)
T 3ct9_A 154 PVSFAIVGE-----PTE-MQPAIAEKGLMVLDVTATGKAGHAARD-EGDNAIYKVLNDIAWFRDYRFEKE-------SPL 219 (356)
T ss_dssp CCSEEEECC-----SBT-TCCEEEECCCEEEEEEEECBCCBTTSS-CCBCTTGGGHHHHHHHHHCCCSCC-------BTT
T ss_pred CCCEEEEcC-----CCC-ceEEEeeeEEEEEEEEEECCCcccCCC-CCCCHHHHHHHHHHHHHhhhcccc-------ccc
Confidence 467777764 443 467789999999999999999999999 88 999999999999987643210 001
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
...++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. ++++.. ...|+
T Consensus 220 ~~~~~~~vg~i~gG~------~~NviP~~a~~~~~iR~~~~~~~~~~~~~i~~~~~~-----~~~~~~-------~~~~~ 281 (356)
T 3ct9_A 220 LGPVKMSVTVINAGT------QHNVVPDKCTFVVDIRSNELYSNEDLFAEIRKHIAC-----DAKARS-------FRLNS 281 (356)
T ss_dssp TBSCEEEEEEEEECS------STTBCCSEEEEEEEEECCTTCCHHHHHHHHHHHCCS-----EEEESC-------SCSCC
T ss_pred CCCCcEEeeEEecCC------cCCcCCCceEEEEEEeeCCCCCHHHHHHHHHHHhhC-----eEEEee-------ccCCC
Confidence 134689999999997 899999999999999999999999999999988863 444441 12333
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
. .+++++++++.+.++++ .+...+|++|++. .++|++.|||+... .+|++||+++++++.+++++|+
T Consensus 282 ~-~~~~~~~l~~~~~~~~~-------~~~~~~g~tD~~~---~~~p~v~~G~g~~~--~~H~~~E~i~~~~l~~~~~~~~ 348 (356)
T 3ct9_A 282 S-RIDEKHPFVQKAVKMGR-------IPFGSPTLSDQAL---MSFASVKIGPGRSS--RSHTAEEYIMLKEIEEAIGIYL 348 (356)
T ss_dssp E-ECCTTSHHHHHHHHTTC-------CCEEECSCCGGGG---CCSCEEECCSSBGG--GTTSTTCEEEHHHHHHHHHHHH
T ss_pred C-CCCCCCHHHHHHHHHhc-------CCcccccccchhh---cCCCEEEECCCccc--cCcCCCcEEEHHHHHHHHHHHH
Confidence 3 35668899988877654 1345679999993 48999999998543 6999999999999999999999
Q ss_pred HHHHHH
Q 013368 423 SIIKAY 428 (444)
Q Consensus 423 ~~l~~l 428 (444)
.++.++
T Consensus 349 ~~~~~~ 354 (356)
T 3ct9_A 349 DLLDGL 354 (356)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998764
|
| >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=426.74 Aligned_cols=390 Identities=17% Similarity=0.159 Sum_probs=305.1
Q ss_pred CCCh-hHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCc---eEEEeecCCCCeEEEEecCCCCCCC
Q 013368 24 AKSD-DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLE---SQTLEFAKNKPLILLKWPGSNPQLP 91 (444)
Q Consensus 24 ~~~~-~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~G~~---~~~~~~~~~~~nl~~~~~g~~~~~~ 91 (444)
+.+. +++++++++|++|||+|+. ++|.++++++.++|+++|++ ++.++...+++||++.++|. +.|
T Consensus 13 ~~~~~~~~~~~l~~lv~ips~s~~~~~~~~~~~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~v~a~~~g~--~~~ 90 (472)
T 3pfe_A 13 CQQWQEEILPSLCDYIKIPNKSPHFDAKWEEHGYMEQAVNHIANWCKSHAPKGMTLEIVRLKNRTPLLFMEIPGQ--IDD 90 (472)
T ss_dssp HHHHHHTHHHHHHHHHTCCCBCGGGCTTHHHHCHHHHHHHHHHHHHHHTCCTTCEEEEECCTTSCCEEEEEECCS--EEE
T ss_pred HHhhHHHHHHHHHHHhCCCCcCCCccccccccchHHHHHHHHHHHHHHcCCCCcceEEEecCCCCcEEEEEEcCC--CCC
Confidence 3345 6799999999999999843 34889999999999999995 55455433468999999773 358
Q ss_pred cEEEEeecccccCCCCCCc--cCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc
Q 013368 92 SILLNSHTDVVPSEPSKWS--HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG 169 (444)
Q Consensus 92 ~i~l~~H~Dtvp~~~~~W~--~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~ 169 (444)
+|+|+|||||||+. +.|+ ++||++.++ +|++||||++|||++++++|.|++.|++.+.+++ +|+|+|+++||.|+
T Consensus 91 ~i~l~~H~D~vp~~-~~w~~~~~Pf~~~~~-~g~~~grG~~D~K~~~a~~l~a~~~l~~~~~~~~-~v~~~~~~~EE~g~ 167 (472)
T 3pfe_A 91 TVLLYGHLDKQPEM-SGWSDDLHPWKPVLK-NGLLYGRGGADDGYSAYASLTAIRALEQQGLPYP-RCILIIEACEESGS 167 (472)
T ss_dssp EEEEEEECCBCCCC-SCCCTTCBTTBCEEE-TTEEESTTCCCCCHHHHHHHHHHHHHHHTTCCCE-EEEEEEESCGGGTS
T ss_pred eEEEEccccCCCCc-CCCCcCCCCCceEEE-CCEEEEeCcccCcHHHHHHHHHHHHHHHcCCCCC-cEEEEEEeCCCCCC
Confidence 99999999999996 7899 999999997 9999999999999999999999999999887776 99999999999986
Q ss_pred cccHHHHHhcc--ccccCceEEEeccCCCCcCCcceeeecccccEEEEEE--EeecCCccCCCCCC--CHHHHHHHHHHH
Q 013368 170 HDGAEKFADSH--VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIK--ARGAPGHGAKLYDN--SAMENLFKSIES 243 (444)
Q Consensus 170 ~~G~~~~~~~~--~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~--v~G~~~Hs~~p~~g--nai~~~~~~i~~ 243 (444)
.|++.+++++ .+.++|+++++|.+...++ ...+.++.+|..+++++ ++|+++|+|.|+.. ||+..+++++.+
T Consensus 168 -~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~i~~g~~G~~~~~~~v~~~G~~~H~~~~~~~~~nai~~~~~~i~~ 245 (472)
T 3pfe_A 168 -YDLPFYIELLKERIGKPSLVICLDSGAGNYE-QLWMTTSLRGNLVGKLTVELINEGVHSGSASGIVADSFRVARQLISR 245 (472)
T ss_dssp -TTHHHHHHHHHHHHCCCSEEEEECCBCSCSS-SCEEEEEECEEEEEEEEEESCSSCBCHHHHTTTSCCHHHHHHHHHHH
T ss_pred -hhHHHHHHHhHhhccCCCEEEEeCCCcCCCC-CeeEEEeeeEEEEEEEEEEeCCCCcccCCCCCCCCCHHHHHHHHHHH
Confidence 7999999875 3446799999986543333 46899999999887755 48999999987754 999999999999
Q ss_pred HHhch-h----------------hhhHHHHh--------------chhccC--C---------ceeeeeeeeccCCCCCC
Q 013368 244 VRRFR-A----------------SQFDLVKA--------------GLKAEG--E---------VVSVNMAFLKAGTPSPN 281 (444)
Q Consensus 244 l~~l~-~----------------~~~~~~~~--------------~~~~~~--~---------~~t~~~~~i~~G~~~~~ 281 (444)
|+.+. . ..+..+.. +..... . .+|++++.|++|.. +
T Consensus 246 l~~~~~~~i~i~gf~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~i~~i~gG~~--~ 323 (472)
T 3pfe_A 246 IEDENTGEIKLPQLYCDIPDERIKQAKQCAEILGEQVYSEFPWIDSAKPVIQDKQQLILNRTWRPALTVTGADGFPA--I 323 (472)
T ss_dssp HBCTTTCCBCCGGGCCCCCHHHHHHHHHHHHHHGGGGTTTSCCCTTCCCSCSCHHHHHHHHHTSCEEEEEEEESCCC--T
T ss_pred hhCcCCCCEeCCCcccCCCCccHHHHHHHhhhccHHHHHhcccccCccccccchHHHHHHhhcCCcEEEeeeecCcC--C
Confidence 98862 0 00000000 000000 0 47899999999831 2
Q ss_pred CcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCC-CCceEEEeecccccccC-CCCCccccCCCCh-HHHHHHH
Q 013368 282 GFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFEFKQRASLHDKF-GRPILTATDSSNP-WWNLLEE 358 (444)
Q Consensus 282 ~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~-l~~~~~~ 358 (444)
+.+.|+||++|++++|+|+.+.++.+.+.++|+++++... .+++++++. .. ..|++ ..+.+++ +++.+.+
T Consensus 324 g~a~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~g~~v~v~~------~~~~~pp~-~~~~n~~~l~~~~~~ 396 (472)
T 3pfe_A 324 ADAGNVMRPVTSLKLSMRLPPLVDPEAASVAMEKALTQNPPYNAKVDFKI------QNGGSKGW-NAPLLSDWLAKAASE 396 (472)
T ss_dssp TTCCSCBCSEEEEEEEEEECTTCCHHHHHHHHHHHHHSSCGGGCEEEEEE------CSCCBCCE-ECCCCCHHHHHHHHH
T ss_pred CCCCCEeCCccEEEEEeecCCCCCHHHHHHHHHHHHHhhCCCCeEEEEEe------cCCCCCcc-cCCCCChHHHHHHHH
Confidence 3388999999999999999999999999999999887432 567777764 23 44554 2444555 7899999
Q ss_pred HHHHhcCCCCCceeecCCcc--hHHHHhc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 359 AVRKANGKLGKPEIFPASTD--ARYFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 359 a~~~~~~~~~~~~~~~g~tD--~~~~~~~--gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
+++++.+..+. ....|++| +++|.+. |+|++.+|++... ..+|++||+++++++.+++++|+.++.+++.+
T Consensus 397 a~~~~~G~~~~-~~~~gg~d~f~~~~~~~~Pg~p~v~~G~g~~~-~~~H~p~E~i~~~~l~~g~~~l~~~l~~la~~ 471 (472)
T 3pfe_A 397 ASMTYYDKPAA-YMGEGGTIPFMSMLGEQFPKAQFMITGVLGPH-SNAHGPNEFLHLDMVKKLTSCVSYVLYSFSQK 471 (472)
T ss_dssp HHHHHHSSCCE-EEEESSCCHHHHHHHHHCTTCEEEEECCBCTT-CCTTSTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCce-eccCCCchhhHHHHHHHcCCCCEEEecCCCCC-CCCcCCCcceeHHHHHHHHHHHHHHHHHHhhc
Confidence 99987554322 23457777 3677763 7888888876432 26999999999999999999999999998754
|
| >1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-53 Score=420.61 Aligned_cols=368 Identities=18% Similarity=0.222 Sum_probs=302.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCCC-ChhHHHHHHHHHHHHCCCceEEEeec--CCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNP-DYTNASKFILAQAEALSLESQTLEFA--KNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~-~e~~~~~~l~~~l~~~G~~~~~~~~~--~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
+.+.++++++|++|++|||+|... ++.++++||.++|+++|++++..+.. ...+|+++.++|.+ .|+|+|+||||
T Consensus 15 ~~~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~v~a~~~g~~--~~~i~l~aH~D 92 (393)
T 1cg2_A 15 TDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG--GKNLLLMSHMD 92 (393)
T ss_dssp HHHHHHHHHHHHHHHTSCCBTTCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS--CCCEEEEEECC
T ss_pred HhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCcCCCCCeEEEEECCCC--CceEEEEEecC
Confidence 345688999999999999997321 24789999999999999998876542 12459999997643 38999999999
Q ss_pred cccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 101 VVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 101 tvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
|||.. +.|+..||. ++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+ .|++.+++.+
T Consensus 93 ~vp~~-~~~~~~Pf~--~~-~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~-~G~~~~~~~~ 167 (393)
T 1cg2_A 93 TVYLK-GILAKAPFR--VE-GDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGS-FGSRDLIQEE 167 (393)
T ss_dssp BSCCT-THHHHSCCE--EE-TTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTT-TTTHHHHHHH
T ss_pred cCCCC-CccccCCee--ee-CCEEEcCCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEEcccccCC-ccHHHHHHHH
Confidence 99976 358778998 66 9999999999999999999999999999887778899999999999985 7999999864
Q ss_pred ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhc
Q 013368 181 VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (444)
Q Consensus 181 ~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~ 258 (444)
.. .+|++++++.+.. + ...++.+.+|..+++|+++|+++||| .|+.+ ||+..+++++..|+.+...
T Consensus 168 ~~-~~d~~i~~e~~~~-~--~~~i~~~~~G~~~~~i~v~G~~~Hag~~p~~g~nAi~~~~~~i~~l~~~~~~-------- 235 (393)
T 1cg2_A 168 AK-LADYVLSFEPTSA-G--DEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK-------- 235 (393)
T ss_dssp HH-HCSEEEECCCEET-T--SCEEESEECEEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCBT--------
T ss_pred hh-cCCEEEEeCCCCC-C--CCcEEEeeeeeEEEEEEEEeeecccCCCcccCcCHHHHHHHHHHHHHhhhCc--------
Confidence 33 4688888864320 1 24688899999999999999999997 58888 9999999999999876421
Q ss_pred hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc-CCCCceEEEeeccccccc
Q 013368 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP-ASRNMTFEFKQRASLHDK 337 (444)
Q Consensus 259 ~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 337 (444)
...++++++.+++|. +.|+||++|++.+|+|+.+.++.+.+.++|+++++. ..++++++++. .
T Consensus 236 ----~~~~~~~v~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~------~ 299 (393)
T 1cg2_A 236 ----AKNLRFNWTIAKAGN------VSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIV------T 299 (393)
T ss_dssp ----TTTEEEEEEEEEECS------STTEECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEEEEE------E
T ss_pred ----ccCceEEEEEEeCCC------CCCEECcccEEEEEEeeCChhhHHHHHHHHHHHHhcccCCCcEEEEEe------c
Confidence 134689999999997 899999999999999999999999999999999874 23567777664 1
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCCCcee-ecCCcchHHHHhcCCCeE-EEccCCCCCCCCCC-CCccccHHHH
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEI-FPASTDARYFRERGLPAI-GFSPMANTPILLHD-HNEFLNQAEY 414 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~-~~g~tD~~~~~~~gip~v-~~gp~~~~~~~~H~-~~E~i~~~~l 414 (444)
...|++...+.++++++.+.+++++.+.+. .+.. .+|++|++++...|+|++ .|||+.. .+|+ +||+++++++
T Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~g~tD~~~~~~~giP~~~~~G~~~~---~~H~~~~E~i~~~~l 375 (393)
T 1cg2_A 300 RGRPAFNAGEGGKKLVDKAVAYYKEAGGTL-GVEERTGGGTDAAYAALSGKPVIESLGLPGF---GYHSDKAEYVDISAI 375 (393)
T ss_dssp ECSCCEECHHHHHHHHHHHHHHHHHTTCCC-EEESCBSCCCTHHHHGGGSCCEECCCSCEEE---CTTSSSCCEEEGGGH
T ss_pred cccCCccCCcchHHHHHHHHHHHHHhCCCC-ccccCCCcccHHHHHHhCCCCEEEeCCCCCC---CccCCCcceEEehhH
Confidence 344443111235789999999998765433 4445 678999999999999998 6898753 5899 9999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 013368 415 LKGIDIYESIIKAYAS 430 (444)
Q Consensus 415 ~~~~~~~~~~l~~l~~ 430 (444)
.+++++|..++.++++
T Consensus 376 ~~~~~~~~~~~~~l~~ 391 (393)
T 1cg2_A 376 PRRLYMAARLIMDLGA 391 (393)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
|
| >2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=422.37 Aligned_cols=389 Identities=16% Similarity=0.192 Sum_probs=303.8
Q ss_pred CCChh-HHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccc
Q 013368 24 AKSDD-SIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (444)
Q Consensus 24 ~~~~~-~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dt 101 (444)
+.+.+ ++++++++|++|||+|.. .++.++++||.++|+++|++++..+. .+.+|++++++|.+++.|+|+|+|||||
T Consensus 39 ~~~~~~~~~~~l~~l~~ips~s~~e~~~~~~~~~l~~~l~~~G~~~~~~~~-~~~~~v~a~~~g~~~~~~~i~l~aH~D~ 117 (481)
T 2pok_A 39 KDHVAQHYFEVLRTLISKKSVFAQQVGLKEVANYLGEIFKRVGAEVEIDES-YTAPFVMAHFKSSRPDAKTLIFYNHYDT 117 (481)
T ss_dssp HCHHHHHHHHHHHHHHHSCCCGGGCTTHHHHHHHHHHHHHHTTCEEEEECS-SSSCEEEEEECCSSTTCCEEEEEEECCC
T ss_pred HhhhhHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHHHcCCEEEEecC-CCCcEEEEEecCCCCCCCeEEEEEeccC
Confidence 45567 899999999999999742 24589999999999999998876542 2568999999864334689999999999
Q ss_pred ccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 102 VPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 102 vp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
||.++ +.|+++||++.++ +|++||||++|||++++++|.|++.|++.+..++++|.|+|+++||.|+ .|++.+++++
T Consensus 118 vp~~~~~~w~~~pf~~~~~-~g~l~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~-~g~~~~~~~~ 195 (481)
T 2pok_A 118 VPADGDQVWTEDPFTLSVR-NGFMYGRGVDDDKGHITARLSALRKYMQHHDDLPVNISFIMEGAEESAS-TDLDKYLEKH 195 (481)
T ss_dssp CCSCSSCCCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTCSSCSSEEEEEEESCGGGTT-TTHHHHHHHH
T ss_pred cCCCCccccccCCCCceee-CCeEEccccccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccCc-hhHHHHHHHh
Confidence 99987 6899999999997 9999999999999999999999999999855788999999999999986 6998888764
Q ss_pred --ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecC--CccCCCCCC-CHHHHHHHHHHHHHhchh------
Q 013368 181 --VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAP--GHGAKLYDN-SAMENLFKSIESVRRFRA------ 249 (444)
Q Consensus 181 --~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~--~Hs~~p~~g-nai~~~~~~i~~l~~l~~------ 249 (444)
.++++|++++.+.+... .+...++++.+|..+++|+++|++ +||+.|+.+ ||+..+++++..|+.+..
T Consensus 196 ~~~~~~~d~~i~~~~~~~~-~~~~~i~~~~~G~~~~~i~v~G~~g~~Hss~p~~g~nAi~~~a~~i~~l~~~~~~i~i~g 274 (481)
T 2pok_A 196 ADKLRGADLLVWEQGTKNA-LEQLEISGGNKGIVTFDAKVKSADVDIHSSYGGVVESAPWYLLQALQSLRAADGRILVEG 274 (481)
T ss_dssp HHHHTTCSEEECSCCBBCT-TSCEEEECCBCEEEEEEEEEECSSSCEEGGGTTTBCCHHHHHHHHHHHTBCTTSCBCCTT
T ss_pred HhhccCCCEEEECCCCccC-CCCeeEEEecceeEEEEEEEecCCCCccccCCCCCCCHHHHHHHHHHHhhCCCCceeccc
Confidence 24436777776543211 112468889999999999999999 899889887 999999999999876530
Q ss_pred -------------hhhHHHH--------h------------chh---ccCCceeeeeeeeccCCCCCCCcccccccCceE
Q 013368 250 -------------SQFDLVK--------A------------GLK---AEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAE 293 (444)
Q Consensus 250 -------------~~~~~~~--------~------------~~~---~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~ 293 (444)
..+..+. . +.. .....+|++++.|++|.. +.+..|+||++|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~t~~vg~i~gG~~--~~~~~NvIP~~a~ 352 (481)
T 2pok_A 275 LYEEVQEPNEREMALLETYGQRNPEEVSRIYGLELPLLQEERMAFLKRFFFDPALNIEGIQSGYQ--GQGVKTILPAEAS 352 (481)
T ss_dssp TGGGSCCCCHHHHHHHHHHSCSCGGGHHHHHTCCSCCSSCSHHHHHHHHHHSCEEEEEEEEEECC--SSSCCCEECSEEE
T ss_pred hhhcCCCCCHHHHHHHHhcCcccHHHHHHhhCcccccccccchhHHHHHhhcCeEeEEeeecCCC--CCCCCeeccCeeE
Confidence 0000000 0 000 000246899999999852 1226799999999
Q ss_pred EEEEeecCCCCCHHHHHHHHHHHhccCC-CCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCcee
Q 013368 294 AGFDIRVPPTTDAESLERRIVEEWAPAS-RNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEI 372 (444)
Q Consensus 294 ~~~d~R~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~ 372 (444)
+.+|+|+.+.++.+.+.++|+++++... .++++++.. ..|++ ..+.++++++.+.+++++..+..+....
T Consensus 353 ~~~diR~~~~~~~~~v~~~i~~~~~~~~~~~~~v~~~~--------~~p~~-~~~~d~~l~~~~~~a~~~~~g~~~~~~~ 423 (481)
T 2pok_A 353 AKLEVRLVPGLEPHDVLEKIRKQLDKNGFDKVELYYTL--------GEMSY-RSDMSAPAILNVIELAKKFYPQGVSVLP 423 (481)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHTTCTTEEEEEEE--------EECCB-CCCSCSHHHHHHHHHHTTTCTTCEEEES
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEcc--------CCCcc-cCCCCCHHHHHHHHHHHHHcCCCccccc
Confidence 9999999999999999999999887432 456666552 23443 3567899999999999987554321222
Q ss_pred ecCCc-chHHHHh-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 373 FPAST-DARYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 373 ~~g~t-D~~~~~~-~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
..|++ |+++|.+ .|+|++.|||+... ..+|++||+++++++.+++++|+.++..+
T Consensus 424 ~~gg~~D~~~~~~~~g~p~v~~G~g~~~-~~~H~~~E~i~i~~l~~~~~~~~~~l~~l 480 (481)
T 2pok_A 424 TTAGTGPMHTVFDALEVPMVAFGLGNAN-SRDHGGDENVRIADYYTHIELVEELIRSY 480 (481)
T ss_dssp CBSSCCTHHHHHHHHCCCEEBCCSBCTT-CCTTSTTCEEEHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCchHHHHHHcCCCEEEecCCCcc-cCCCCCCCcEEHHHHHHHHHHHHHHHHhc
Confidence 33444 9998865 69999999998621 26999999999999999999999998754
|
| >3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-51 Score=416.17 Aligned_cols=395 Identities=15% Similarity=0.224 Sum_probs=301.1
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCC------hhHHHHHHHHHHHHCCCceEEEeec-----CC-----CCeEEEEecC
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPD------YTNASKFILAQAEALSLESQTLEFA-----KN-----KPLILLKWPG 85 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~------e~~~~~~l~~~l~~~G~~~~~~~~~-----~~-----~~nl~~~~~g 85 (444)
+.+.+.+++++++++|++|||+|.+.+ +.++++||.++|+++|++++..+.. .+ .+|+++.+.+
T Consensus 19 ~i~~~~~~~i~~l~~lv~ips~~~s~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~g~~~~~~~~v~a~~~~ 98 (485)
T 3dlj_A 19 YIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGS 98 (485)
T ss_dssp HHHHTHHHHHHHHHHHHTSCCBSSSCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCEEEC--CCEEECCCEEEEEECC
T ss_pred HHHHhHHHHHHHHHHHhcCCCccCCCCccccHHHHHHHHHHHHHHHHcCCeEEEEecCcccccCCCccCCCcEEEEEECC
Confidence 345677899999999999999932233 6789999999999999998876532 13 3689999854
Q ss_pred CCCCCCcEEEEeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecC
Q 013368 86 SNPQLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (444)
Q Consensus 86 ~~~~~~~i~l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (444)
. ++.|+|+|+|||||||.++ +.|+++||++.++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++
T Consensus 99 ~-~~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~-~g~l~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~ 176 (485)
T 3dlj_A 99 D-PTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEV-DGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGM 176 (485)
T ss_dssp C-TTSCEEEEEEECCBCCCCGGGTCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESC
T ss_pred C-CCCCEEEEEeeecCCCCCCcccCCCCCCccEEE-CCEEEecccccCcHHHHHHHHHHHHHHHhCCCCCccEEEEEEcc
Confidence 3 3458999999999999986 7899999999997 99999999999999999999999999998888999999999999
Q ss_pred cccCccccHHHHHhccc---cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCC--ccCCCCCCCHHHHHHH
Q 013368 165 EEIGGHDGAEKFADSHV---FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPG--HGAKLYDNSAMENLFK 239 (444)
Q Consensus 165 EE~g~~~G~~~~~~~~~---~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~--Hs~~p~~gnai~~~~~ 239 (444)
||.|+ .|++.+++++. ++++|++++++.+...+ ....++++.+|..+++|+++|+++ |+|. ...||+.+++.
T Consensus 177 EE~g~-~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~g~~g~~~~~i~v~G~~~~~H~~~-~g~~a~~~~~~ 253 (485)
T 3dlj_A 177 EEAGS-VALEELVEKEKDRFFSGVDYIVISDNLWISQ-RKPAITYGTRGNSYFMVEVKCRDQDFHSGT-FGGILHEPMAD 253 (485)
T ss_dssp GGGTT-TTHHHHHHHHTTTTSTTCCEEEECCCBCCC---CCEEEEEECEEEEEEEEEESCSSCEETTT-STTSSCCHHHH
T ss_pred cccCC-ccHHHHHHhhhhhcccCCCEEEEcCCCccCC-CCeeEEEeccceEEEEEEEEECCCCCcCCC-CCccccCHHHH
Confidence 99986 69999998753 45678888887432211 235788899999999999999999 9987 33377777777
Q ss_pred HHHHHHhchhhh-------------------hHHHHh------------ch------------hccCCceeeeeeeeccC
Q 013368 240 SIESVRRFRASQ-------------------FDLVKA------------GL------------KAEGEVVSVNMAFLKAG 276 (444)
Q Consensus 240 ~i~~l~~l~~~~-------------------~~~~~~------------~~------------~~~~~~~t~~~~~i~~G 276 (444)
++..|..+.... .+.+.. +. ......++++++.|++|
T Consensus 254 l~~~l~~l~~~~g~i~ipg~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~i~gG 333 (485)
T 3dlj_A 254 LVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGA 333 (485)
T ss_dssp HHHHHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHHHTSCCCHHHHHHHHTCSCCSCSSHHHHHHHHHTSCEEEEEEEESS
T ss_pred HHHHHHhhCCCCCCEeCCCcccccCCCCHHHHHHHHhCCCCHHHHHHhcCCCcccccchHHHHHHHhcCCceEEEEEecC
Confidence 776666553210 000000 00 00002578999999998
Q ss_pred CCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCC--ceEEEeecccccccCCCCCccccCCCChH
Q 013368 277 TPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRN--MTFEFKQRASLHDKFGRPILTATDSSNPW 352 (444)
Q Consensus 277 ~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 352 (444)
.. ++.+.|+||++|++.+|+|+.+.++.+.+.++|+++++.. ..+ .+++++.. ...|+. ..+.++++
T Consensus 334 ~~--gp~a~NVIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~a~~~g~~~~~~v~~~------~~~pp~-~~~~d~~~ 404 (485)
T 3dlj_A 334 FD--EPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMT------LGLHPW-IANIDDTQ 404 (485)
T ss_dssp CC--SSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCSSEEEEEEE------EEECCE-ECCTTSHH
T ss_pred Cc--CCCCCceeCCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCeeEEEEEc------CCCCce-eCCCCCHH
Confidence 42 3348999999999999999999999999999999888742 233 35655531 233433 25567799
Q ss_pred HHHHHHHHHHhcCCCCCceeecCCcch-HHHHh-cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 353 WNLLEEAVRKANGKLGKPEIFPASTDA-RYFRE-RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~~g~tD~-~~~~~-~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
++.+.++++++.+..+.....+|++|+ .+|.+ .++|.+.+|.+... ..+|+++|+++++++..++++|+.++.++++
T Consensus 405 ~~~~~~a~~~~~G~~~~~~~~ggs~Dfa~~~~~~~p~~~i~~g~g~~~-~~~H~p~E~i~~~~l~~g~~~l~~~l~~la~ 483 (485)
T 3dlj_A 405 YLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVVLIPLGAVD-DGEHSQNEKINRWNYIEGTKLFAAFFLEMAQ 483 (485)
T ss_dssp HHHHHHHHHHHHSSCCEEEEESSCCHHHHHHHHHTC--CEECCCBCTT-CCTTSTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCceecCCCCchhHHHHHHHHhCCCEEEecCCCCC-CCCcCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence 999999999975543233345678895 57765 57777777766322 2699999999999999999999999999876
Q ss_pred c
Q 013368 431 Y 431 (444)
Q Consensus 431 ~ 431 (444)
+
T Consensus 484 ~ 484 (485)
T 3dlj_A 484 L 484 (485)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-51 Score=404.75 Aligned_cols=356 Identities=17% Similarity=0.186 Sum_probs=296.5
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee----cCCCCeEEEEecCCCCCCCcEEEEeeccc
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF----AKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~----~~~~~nl~~~~~g~~~~~~~i~l~~H~Dt 101 (444)
+.+++++++++|+++||+| ++|.++++||.++|+++|++++.... ..+++|+++.++|.+++.|+|+|+||||+
T Consensus 4 ~~~~~~~~l~~l~~~ps~s--~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nv~a~~~g~~~~~~~v~l~aH~D~ 81 (373)
T 3gb0_A 4 NQERLVNEFMELVQVDSET--KFEAEICKVLTKKFTDLGVEVFEDDTMAVTGHGAGNLICTLPATKDGVDTIYFTSHMDT 81 (373)
T ss_dssp CHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHHHTTCEEEECSCHHHHCCSSCCEEEEECCSSTTCCCEEEEEECCB
T ss_pred CHHHHHHHHHHHhcccCCC--ccHHHHHHHHHHHHHHCCCEEEEeccccccCCCceeEEEEecCCCCCCCEEEEEEECcc
Confidence 5789999999999999986 78899999999999999998875432 12457999999876334689999999999
Q ss_pred ccCCCCCCccCCCcceecCCCeEEecCc----ccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHH
Q 013368 102 VPSEPSKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (444)
Q Consensus 102 vp~~~~~W~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (444)
||.++ ||++.++ +|++||||+ +|||++++++|.+++.|++.+. ++++|.|+|+++||.|+ .|++.+.
T Consensus 82 vp~~~------~~~p~~~-~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~-~Ga~~~~ 152 (373)
T 3gb0_A 82 VVPGN------GIKPSIK-DGYIVSDGTTILGADDKAGLASMFEAIRVLKEKNI-PHGTIEFIITVGEESGL-VGAKALD 152 (373)
T ss_dssp CSSCS------SCCCEEE-TTEEECCSSSCCCHHHHHHHHHHHHHHHHHHHTTC-CCCCEEEEEESCGGGTS-HHHHHSC
T ss_pred cCCCC------CcCcEEE-CCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEeccccCc-hhhhhhC
Confidence 99863 4556776 999999999 7999999999999999998875 68999999999999885 7999986
Q ss_pred hccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhhHHH
Q 013368 178 DSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLV 255 (444)
Q Consensus 178 ~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~~ 255 (444)
.+. + ..|++++++.+. + ...+.++.+|..+++|+++|+++|++ .|+.+ ||+..+++++..|+...
T Consensus 153 ~~~-~-~~~~~~~~~~~~--~--~g~i~~~~~g~~~~~i~~~G~~~Ha~~~p~~g~nai~~~~~~i~~l~~~~------- 219 (373)
T 3gb0_A 153 RER-I-TAKYGYALDSDG--K--VGEIVVAAPTQAKVNAIIRGKTAHAGVAPEKGVSAITIAAKAIAKMPLGR------- 219 (373)
T ss_dssp GGG-C-CCSEEEEEEECS--C--TTEEEEEECEEEEEEEEEECBCCBTTTCGGGSBCHHHHHHHHHTTSCCEE-------
T ss_pred HHh-c-CCCEEEEEcCCC--C--CCeEEEcCCCcEEEEEEEEeEecCCCCChhhCcCHHHHHHHHHHhccccc-------
Confidence 543 3 357888887542 2 24688889999999999999999999 79999 99999999998876421
Q ss_pred HhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeeccc
Q 013368 256 KAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRAS 333 (444)
Q Consensus 256 ~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~ 333 (444)
....++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. ...+++++++..
T Consensus 220 ------~~~~~~~~vg~i~gG~------~~Nvip~~~~~~~d~R~~~~~~~~~~~~~i~~~~~~~~~~~g~~~~i~~~-- 285 (373)
T 3gb0_A 220 ------IDSETTANIGRFEGGT------QTNIVCDHVQIFAEARSLINEKMEAQVAKMKEAFETTAKEMGGHADVEVN-- 285 (373)
T ss_dssp ------EETTEEEEEEEEEECS------CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE--
T ss_pred ------CCCccccceeEEecCc------ccccccceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe--
Confidence 1134678999999986 999999999999999999999999999999888763 235666666541
Q ss_pred ccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHH
Q 013368 334 LHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAE 413 (444)
Q Consensus 334 ~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~ 413 (444)
...|+. .+++++++++.+.+++++.+... .+....|++|+++|++.|+|++.|||+.. .+|++||++++++
T Consensus 286 ----~~~~~~-~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~g~~D~~~~~~~gip~~~~g~~~~---~~H~~~E~i~~~~ 356 (373)
T 3gb0_A 286 ----VMYPGF-KFADGDHVVEVAKRAAEKIGRTP-SLHQSGGGSDANVIAGHGIPTVNLAVGYE---EIHTTNEKIPVEE 356 (373)
T ss_dssp ----EEECCE-ECCTTCHHHHHHHHHHHHTTCCC-EEEECSSCCHHHHHHHTTCCEEEEECCCB---STTSTTCEEEHHH
T ss_pred ----cccCCc-ccCCCCHHHHHHHHHHHHhCCCc-eEecccCcchHHHHHhCCCCEEEecCCCC---cCcCCceEEEHHH
Confidence 234443 24668999999999999975443 44566789999999999999999999864 5999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 013368 414 YLKGIDIYESIIKAY 428 (444)
Q Consensus 414 l~~~~~~~~~~l~~l 428 (444)
+.+++++|+.++.++
T Consensus 357 l~~~~~~~~~~l~~l 371 (373)
T 3gb0_A 357 LAKTAELVVAIIEEV 371 (373)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999887
|
| >3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-51 Score=406.44 Aligned_cols=362 Identities=16% Similarity=0.196 Sum_probs=299.1
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee----cCCCCeEEEEecCC--CCCCCcEEE
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF----AKNKPLILLKWPGS--NPQLPSILL 95 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~----~~~~~nl~~~~~g~--~~~~~~i~l 95 (444)
+...+.+++++++++|++|||+| ++|.++++||.++|+++|++++.... ..+.+|+++.++|. .++.|+|+|
T Consensus 18 ~~~~~~~~~~~~l~~L~~ips~s--~~E~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~~nvia~~~g~~~~~~~~~i~l 95 (396)
T 3rza_A 18 QGMINEQRLLNTFLELVQIDSET--GNESTIQPILKEKFIALGLDVKEDEAAKHPKLGANNLVCTMNSTIEEGEVPKLYL 95 (396)
T ss_dssp -CCSCHHHHHHHHHHHHTSCCBT--TCTTTHHHHHHHHHHHTTCEEEECSGGGSTTCSSCCEEEEECCCCC---CCCEEE
T ss_pred EEeecHHHHHHHHHHHeecCCCC--cCHHHHHHHHHHHHHHCCCEEEEeccccccCCCCceEEEEECCcCCCCCCCeEEE
Confidence 46778899999999999999986 78899999999999999999875432 12367999999875 134589999
Q ss_pred EeecccccCCCCCCccCCCcceecCC-CeEEecCc----ccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcc
Q 013368 96 NSHTDVVPSEPSKWSHHPFGAHLDSQ-GNIFARGS----QDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~-g~l~GrG~----~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (444)
+||||+||.++ +|++..+ + |++||||+ +|||++++++|.|++.|++.+. ++++|.|+|+++||.|+
T Consensus 96 ~aH~D~vp~g~------~~~p~~~-~~g~~~g~G~~~~g~D~k~g~a~~l~a~~~l~~~~~-~~~~v~~~~~~~EE~g~- 166 (396)
T 3rza_A 96 TSHMDTVVPAI------NVKPIVK-DDGYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQI-PHGQIQFVITVGEESGL- 166 (396)
T ss_dssp EEECCBCSSCS------SCCCEEC-TTSEEECCSSSCCCHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEEEESCGGGTS-
T ss_pred EEECCccCCCC------CcceEEe-cCCEEECCCccccCcccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEccccccc-
Confidence 99999999863 3344565 5 99999999 7999999999999999998874 67999999999999985
Q ss_pred ccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchh
Q 013368 171 DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRA 249 (444)
Q Consensus 171 ~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~ 249 (444)
.|++.+.+++ ++ .+++++++.+. + ...++++.+|..+++|+++|+++|+|.|+.+ ||+..+++++..|+...
T Consensus 167 ~Ga~~~~~~~-~~-~~~~~~~~~~~--~--~g~i~~~~~g~~~~~i~v~G~~~Ha~~p~~g~nai~~~~~~i~~l~~~~- 239 (396)
T 3rza_A 167 IGAKELNSEL-LD-ADFGYAIDASA--D--VGTTVVGAPTQMLISAKIIGKTAHASTPKEGVSAINIAAKAISRMKLGQ- 239 (396)
T ss_dssp HHHHHCCGGG-CC-CSEEEEEEESS--C--TTCEEEEECEEEEEEEEEECBCCBTTSGGGSBCHHHHHHHHHHHSCCEE-
T ss_pred HhHhhhchhh-cc-cceEEEEecCC--C--cceEEEcCCceEEEEEEEEeEecCCCCccccccHHHHHHHHHHhcccCC-
Confidence 6999987643 33 47888887542 2 2468888999999999999999999999999 99999999999886421
Q ss_pred hhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEE
Q 013368 250 SQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFE 327 (444)
Q Consensus 250 ~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~ 327 (444)
....++++++.+++|. +.|+||++|++.+|+|+.+.++.+.+.++|+++++. ...+++++
T Consensus 240 ------------~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~~~~~i~~~~~~~a~~~g~~~~ 301 (396)
T 3rza_A 240 ------------VDEITTANIGKFHGGS------ATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGGKAE 301 (396)
T ss_dssp ------------EETTEEEEEEEEEECS------CTTBCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ------------CCCCceeeeeEEecCC------CCcccCceEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1124689999999987 999999999999999999999999999999888763 23566666
Q ss_pred EeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCc
Q 013368 328 FKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNE 407 (444)
Q Consensus 328 ~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E 407 (444)
++. ....|++ .+++++++++.+.+++++.+... .+....|++|+++|...|+|++.|||+.. .+|+++|
T Consensus 302 i~~------~~~~p~~-~~~~d~~l~~~~~~~~~~~g~~~-~~~~~~g~tD~~~~~~~giP~~~~g~g~~---~~H~~~E 370 (396)
T 3rza_A 302 VTV------EQSYPGF-KINDNEAVVKIAQESARNLGLSA-NTIISGGGSDGSIINTFGIPSVILGVGYE---KIHTTNE 370 (396)
T ss_dssp EEE------EEEECCE-ECCTTSHHHHHHHHHHHHTTCCC-CEEECSSCCHHHHHGGGTCCEEEEECCCB---STTSTTC
T ss_pred EEE------EeccCCc-ccCCCcHHHHHHHHHHHHcCCCc-eecccceeccHHHHhhCCCcEEEECCCCC---CCCCCcc
Confidence 654 1334443 24668999999999999876544 45566799999999999999999999864 5999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHc
Q 013368 408 FLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 408 ~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+++++++.+++++|+.++..+++
T Consensus 371 ~v~~~~l~~~~~~~~~~~~~l~~ 393 (396)
T 3rza_A 371 RMPIKSLNLLASQVLEIIKIVAR 393 (396)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864
|
| >3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=400.50 Aligned_cols=352 Identities=18% Similarity=0.210 Sum_probs=285.1
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
.+++++++++|+++||+| ++|.++++||.++|+++|++ .+... ..+|+++.+++. +.|+|+|+|||||||.+
T Consensus 12 ~~~~~~~~~~l~~~ps~s--~~e~~~~~~l~~~l~~~G~~~~~~~~---~~~~~~a~~~~~--~~~~v~l~~H~D~vp~~ 84 (369)
T 3tx8_A 12 LGDPIVLTQRLVDIPSPS--GQEKQIADEIEDALRNLNLPGVEVFR---FNNNVLARTNRG--LASRVMLAGHIDTVPIA 84 (369)
T ss_dssp CSCHHHHHHHHHSSCCBT--TCTHHHHHHHHHHHHTTTCTTCEEEE---ETTEEEEECCCC--CSCEEEEEEECCBSCCC
T ss_pred HHHHHHHHHHHhcCCCCC--ccHHHHHHHHHHHHHhcCCCCcEEec---cCCcEEEEecCC--CCCeEEEEcccCccCCC
Confidence 467899999999999996 78899999999999999984 54433 245999998764 34899999999999987
Q ss_pred CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcc-ccHHHHHhccc-cc
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH-DGAEKFADSHV-FN 183 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~-~G~~~~~~~~~-~~ 183 (444)
+ ||...++ +|++||||++|||++++++|.|++.|++. .+++++|.|+|+++||.|+. .|++.+++.+. ..
T Consensus 85 ~------~~~~~~~-~g~~~g~G~~D~K~~~a~~l~a~~~l~~~-~~~~~~v~~~~~~~EE~g~~~~G~~~~~~~~~~~~ 156 (369)
T 3tx8_A 85 D------NLPSRVE-DGIMYGCGTVDMKSGLAVYLHTFATLATS-TELKHDLTLIAYECEEVADHLNGLGHIRDEHPEWL 156 (369)
T ss_dssp S------CCSCEEC-SSEEESSSTTTTHHHHHHHHHHHHHHTSC-TTCCSEEEEEEECCCSSCTTSCHHHHHHHHCGGGG
T ss_pred C------CCCCeEE-CCEEEcCCcccchHHHHHHHHHHHHHHhh-cCCCccEEEEEEeccccCcccccHHHHHHhccccc
Confidence 3 6777887 99999999999999999999999999864 36799999999999998852 59999998651 12
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
..|++++.+ |+. ..++.+.+|..+++|+++|+++|+|.|+.+ ||+..+++++..|..+.....+ ....
T Consensus 157 ~~~~~i~~e-----p~~-~~i~~~~~G~~~~~i~v~G~~~Ha~~p~~g~nAi~~~a~~i~~l~~~~~~~~~-----~~~~ 225 (369)
T 3tx8_A 157 AADLALLGE-----PTG-GWIEAGCQGNLRIKVTAHGVRAHSARSWLGDNAMHKLSPIISKVAAYKAAEVN-----IDGL 225 (369)
T ss_dssp CCSEEEECC-----CCT-TCEEESBCEEEEEEEEEECBCCBTTSGGGSBCTGGGGHHHHHHHHHCCCCEEE-----ETTE
T ss_pred CCCEEEEeC-----CCC-CceeeecceEEEEEEEEeeeccccCCCCcCcCHHHHHHHHHHHHHhhcccccc-----cCCc
Confidence 357777764 443 578899999999999999999999999988 9999999999999876432100 0000
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC-CCCceEEEeecccccccCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFEFKQRASLHDKFGRP 341 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~p 341 (444)
...++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++.. ..++++++.. .. +
T Consensus 226 ~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~v~~~i~~~~~~~~~~g~~~~~~~-------~~-~ 291 (369)
T 3tx8_A 226 TYREGLNIVFCESGV------ANNVIPDLAWMNLNFRFAPNRDLNEAIEHVVETLELDGQDGIEWAVED-------GA-G 291 (369)
T ss_dssp EEECEEEEEEEEECS------BTTBCCSEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSTTEEEEEEE-------EE-C
T ss_pred ccCceEEEEEEECCC------CCccccCcEEEEEEEecCCCCCHHHHHHHHHHHHHhcccCCeEEEEEe-------cC-C
Confidence 014689999999987 8999999999999999999999999999999988743 2456666642 12 2
Q ss_pred CccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 342 ILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 342 ~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
.+ ....++++++.+.+++ +... +....|+||+++|++.|+|++.|||+... .+|++||+++++++.+++++|
T Consensus 292 ~~-~~~~~~~~~~~~~~~~---g~~~--~~~~~ggtD~~~~~~~giP~~~~Gpg~~~--~~H~~~E~v~~~~l~~~~~~l 363 (369)
T 3tx8_A 292 GA-LPGLGQQVTSGLIDAV---GREK--IRAKFGWTDVSRFSAMGIPALNFGAGDPS--FAHKRDEQCPVEQITDVAAIL 363 (369)
T ss_dssp CB-CCCTTSHHHHHHHHHH---CGGG--EEECCSCCTHHHHHTTTCCEEEECSSCSS--SSSCTTCEEEHHHHHHHHHHH
T ss_pred CC-CCCCCCHHHHHHHHHc---CCCC--CcccccccchHHHhhCCCCEEEECCCChh--hCCCCCcEEEHHHHHHHHHHH
Confidence 22 2455788888877664 3212 34566899999999999999999998654 699999999999999999999
Q ss_pred HHHHH
Q 013368 422 ESIIK 426 (444)
Q Consensus 422 ~~~l~ 426 (444)
+.++.
T Consensus 364 ~~~l~ 368 (369)
T 3tx8_A 364 KQYLS 368 (369)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99875
|
| >2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=415.12 Aligned_cols=392 Identities=17% Similarity=0.247 Sum_probs=305.2
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCC----ChhHHHHHHHHHHHHCCCceEEEeec-----CCC-----CeEEEEecCCCC
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFA-----KNK-----PLILLKWPGSNP 88 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~----~e~~~~~~l~~~l~~~G~~~~~~~~~-----~~~-----~nl~~~~~g~~~ 88 (444)
.+.+.+++++++++|++|||+|... ++.++++||+++|+++|++++..+.. .++ +||++.+.+. +
T Consensus 15 ~~~~~~~~~~~l~~l~~~ps~s~~e~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~v~a~~~~~-~ 93 (479)
T 2zog_A 15 IDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVELVDIGKQKLPDGSEIPLPPILLGKLGSD-P 93 (479)
T ss_dssp HHHTHHHHHHHHHHHHHSCCBTTCGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCEEECTTSCEEECCCEEEEEECCC-T
T ss_pred HHHhHHHHHHHHHHHhcCCCccCCcccchHHHHHHHHHHHHHHHcCCeEEEeeccccccCCCcccCCCCEEEEEecCC-C
Confidence 3456789999999999999997321 23789999999999999998765431 233 7999998653 3
Q ss_pred CCCcEEEEeecccccCCC-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 89 QLPSILLNSHTDVVPSEP-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 89 ~~~~i~l~~H~Dtvp~~~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
+.|+|+|+|||||||.++ +.|+++||++.++ +|++||||++|||++++++|+|++.|++.+.+++++|.|+|+++||.
T Consensus 94 ~~~~i~l~aH~D~vp~~~~~~w~~~Pf~~~~~-~g~l~grGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~ 172 (479)
T 2zog_A 94 QKKTVCIYGHLDVQPAALEDGWDSEPFTLVER-EGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEES 172 (479)
T ss_dssp TSCEEEEEEECCBCCCCGGGTCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGG
T ss_pred CCCeEEEEEecCCCCCCccccCcCCCCcceeE-CCEEEeeccccChHHHHHHHHHHHHHHHhCCCCCCcEEEEEeccccc
Confidence 458999999999999976 7899999999997 99999999999999999999999999998888899999999999999
Q ss_pred CccccHHHHHhcc---ccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecC--CccCCCCCCCHHHHHHHHHH
Q 013368 168 GGHDGAEKFADSH---VFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAP--GHGAKLYDNSAMENLFKSIE 242 (444)
Q Consensus 168 g~~~G~~~~~~~~---~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~--~Hs~~p~~gnai~~~~~~i~ 242 (444)
|+ .|++.+++++ .+.++|++++++.+...++ ...++++.+|..+++|+++|++ +|||.+ ..||+..+++++.
T Consensus 173 g~-~Ga~~~~~~~~~~~~~~~d~~i~~e~~~~~~~-~~~i~~~~~G~~~~~i~v~G~~~~~Hs~~~-g~~ai~~~~~~i~ 249 (479)
T 2zog_A 173 GS-EGLDELIFAQKDKFFKDVDYVCISDNYWLGKN-KPCITYGLRGICYFFIEVECSDKDLHSGVY-GGSVHEAMTDLIS 249 (479)
T ss_dssp TC-TTHHHHHHHTTTTTTTTCCEEEECCCBCSSSS-SCEEEEEECEEEEEEEEEECCSSCEEHHHH-TTTSCCHHHHHHH
T ss_pred CC-ccHHHHHHhhhhhhcccCCEEEEeCCCcCCCC-CeEEEEecceEEEEEEEEEeCCCCCccCCC-CCCccCHHHHHHH
Confidence 86 7999999875 3345688888876543232 3578899999999999999999 999984 3399999999998
Q ss_pred HHHhchhhh---------------------------hH--HHHh--ch------------hccCCceeeeeeeeccCCCC
Q 013368 243 SVRRFRASQ---------------------------FD--LVKA--GL------------KAEGEVVSVNMAFLKAGTPS 279 (444)
Q Consensus 243 ~l~~l~~~~---------------------------~~--~~~~--~~------------~~~~~~~t~~~~~i~~G~~~ 279 (444)
.|..+.... ++ .+.. +. ......++++++.|++|.
T Consensus 250 ~l~~l~~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~i~gg~-- 327 (479)
T 2zog_A 250 LMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSCKKDILMHRWRYPSLSLHGIEGAF-- 327 (479)
T ss_dssp HHTTSBCTTSCBCSTTTTTTSCCCCHHHHHHTSSCCCCHHHHHHHHTCSSCSCSSHHHHHHHHHTSCEEEEEEEESSC--
T ss_pred HHHhcCCCCCCEecCchhccCCCCCHHHHHHHHhCCCCHHHHHHhcCCccccccchHHHHHHhhcCCCeEEeeeecCC--
Confidence 887654320 00 0000 00 000014689999999883
Q ss_pred CCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC----CCCceEEEeecccccccCCCCCccccCCCChHHHH
Q 013368 280 PNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA----SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNL 355 (444)
Q Consensus 280 ~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 355 (444)
.++.+.|+||++|++.+|+|+.|.++.+++.++|+++++.. ..+.+++++.. ...|++ ..+.++++++.
T Consensus 328 ~g~~~~NvIP~~a~~~~~~R~~~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~p~~-~~~~d~~~~~~ 400 (479)
T 2zog_A 328 SGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMG------HGGKPW-VSDFNHPHYQA 400 (479)
T ss_dssp CSSSCCCEECSEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCCCSEEEEEEE------EEECCE-ECCTTSHHHHH
T ss_pred cCCCCccccCCceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhhccCCCceEEEEec------CCCCce-ecCCCCHHHHH
Confidence 13348999999999999999999999999999998887632 12445555531 233443 35668999999
Q ss_pred HHHHHHHhcCCCCCceeecCCcch-HHHHh-cCCCeEEE--ccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 356 LEEAVRKANGKLGKPEIFPASTDA-RYFRE-RGLPAIGF--SPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~~g~tD~-~~~~~-~gip~v~~--gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
+.++++++.+..+.....+|++|+ ++|.. .++|++.| ||+.. .+|++||+++++++.+++++|+.++..+++.
T Consensus 401 ~~~a~~~~~g~~~~~~~~~gs~d~~~~~~~~~~~p~~~~g~g~~~~---~~H~~~E~i~~~~l~~~~~~~~~~~~~~~~~ 477 (479)
T 2zog_A 401 GRRALKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADD---GAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 477 (479)
T ss_dssp HHHHHHHHHSSCCEEEEESSCCTHHHHHHHHHCSEEEECCCBCTTC---CTTSTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCceecCCCCccchHHHHHHHhCCCEEEecCCCCcc---CCCCCCCcEeHHHHHHHHHHHHHHHHHHHhh
Confidence 999999985543233345688997 57766 48999875 55432 6999999999999999999999999998764
|
| >2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=404.77 Aligned_cols=348 Identities=20% Similarity=0.252 Sum_probs=287.5
Q ss_pred hhHHHHHHHhhhcccCCCCC-CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCC-CCCCCcEEEEeecccccC
Q 013368 27 DDSIIERFRAYLQIDTSQPN-PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS-NPQLPSILLNSHTDVVPS 104 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~-~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~-~~~~~~i~l~~H~Dtvp~ 104 (444)
.+++++++++|++|||+|+. ++|.++++||.++|+++|++++... .|+++.+.|. +++.|+|+|+|||||||.
T Consensus 5 ~~~~~~~l~~l~~ips~s~~~~~e~~~~~~l~~~l~~~G~~~~~~~-----~~~~~~~~~~~~~~~~~i~l~aH~D~vp~ 79 (364)
T 2rb7_A 5 MQHIVELTSDLIRFPSMHSRPEQISRCAGFIMDWCAQNGIHAERMD-----HDGIPSVMVLPEKGRAGLLLMAHIDVVDA 79 (364)
T ss_dssp HHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTTCCCEEEE-----ETTEEEEEECSBTTEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHHHHHcCCeEEEec-----CCCceEEEEEcCCCCCeEEEECccCcCCC
Confidence 57899999999999999743 4788999999999999999987542 3688887642 224579999999999985
Q ss_pred CCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCC---cce--EEEEeecCcccCccccHHHHHhc
Q 013368 105 EPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQP---VRS--VYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 105 ~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~---~~~--i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
+.+||++.++ +|++||||++|||++++++|.|++.|++.+.++ +++ |.|+|+++||.++..|++.++++
T Consensus 80 -----~~~p~~~~~~-~g~~~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~~g~~~v~~~~~~~EE~~g~~G~~~~~~~ 153 (364)
T 2rb7_A 80 -----EDDLFVPRVE-NDRLYGRGANDDKYAVALGLVMFRDRLNALKAAGRSQKDMALGLLITGDEEIGGMNGAAKALPL 153 (364)
T ss_dssp -----CGGGGSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEESCGGGTSTTTHHHHGGG
T ss_pred -----CCCCCccEEE-CCEEEecccccccHHHHHHHHHHHHHHHhCCCCcccCCCccEEEEEEeccccCchhhHHHHHhc
Confidence 5789999997 999999999999999999999999999876555 568 99999999997555799999987
Q ss_pred cccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhc
Q 013368 180 HVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (444)
Q Consensus 180 ~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~ 258 (444)
+ +.|++++++.+ +|++ ++++.+|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+... .
T Consensus 154 ~---~~d~~i~~d~~--~p~~---i~~~~~G~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~~-------~ 218 (364)
T 2rb7_A 154 I---RADYVVALDGG--NPQQ---VITKEKGIIDIKLTCTGKAAHGARPWMGVNAVDLLMEDYTRLKTLFAE-------E 218 (364)
T ss_dssp C---EEEEEEECSSS--BTTE---EEEEECEEEEEEEEEECBCEETTSGGGSBCHHHHHHHHHHHHHTTSCC-------C
T ss_pred C---CCCEEEEccCC--cccc---eEEEeeeEEEEEEEEEeecccCCCCCCCcCHHHHHHHHHHHHHhhccc-------h
Confidence 5 45788887754 4553 8889999999999999999999999988 9999999999999875210 0
Q ss_pred hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccC
Q 013368 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKF 338 (444)
Q Consensus 259 ~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
.. ....++++++.+++|. +.|+||++|++++|+|+.+.++.+++.++|+++++. +++.. .
T Consensus 219 ~~-~~~~~~~~vg~i~gG~------~~NviP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~-----~v~~~--------~ 278 (364)
T 2rb7_A 219 NE-DHWHRTVNLGRIRAGE------STNKVPDVAEGWFNIRVTEHDDPGALIDKIRKTVSG-----TVSIV--------R 278 (364)
T ss_dssp CT-TCCSCEEEEEEEEECS------CTTEECSEEEEEEEEEECTTSCHHHHHHHHHHHCSS-----EEEEE--------E
T ss_pred hh-cCCCceEEEEEEecCC------cCcccCcceEEEEEEeeCCCCCHHHHHHHHHHHhhh-----hEEec--------c
Confidence 00 0024689999999997 899999999999999999999999999999988863 34422 2
Q ss_pred CCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHH
Q 013368 339 GRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGI 418 (444)
Q Consensus 339 ~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~ 418 (444)
..|. ..+.++++++.+.++++ ..+ ....|++|+++|...++|++.|||+... ..|++||+++++++.+++
T Consensus 279 ~~~~--~~~~~~~l~~~~~~~~~-~~g-----~~~~g~~D~~~~~~~~~p~v~~Gp~~~~--~~H~~~E~i~~~~l~~~~ 348 (364)
T 2rb7_A 279 TVPV--FLAADSPYTERLLALSG-ATA-----GKAHGASDARYLGENGLTGVVWGAEGFN--TLHSRDECLHIPSLQSIY 348 (364)
T ss_dssp EECC--EECCCCHHHHHHHHHHC-CEE-----EEESSCCGGGGTGGGTCCEEECCCCCTT--CTTSTTCEEETTHHHHHH
T ss_pred CCcc--ccCCCCHHHHHHHHHHH-hcC-----CCCCCCchHHHHHhcCCCEEEECCCCcc--ccCCCCccccHHHHHHHH
Confidence 2333 24567899999999887 322 1267899999999889999999998651 249999999999999999
Q ss_pred HHHHHHHHHHHc
Q 013368 419 DIYESIIKAYAS 430 (444)
Q Consensus 419 ~~~~~~l~~l~~ 430 (444)
++|+.++..++.
T Consensus 349 ~~~~~~~~~~~~ 360 (364)
T 2rb7_A 349 DPLMQLAREMEE 360 (364)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=406.34 Aligned_cols=370 Identities=16% Similarity=0.140 Sum_probs=283.0
Q ss_pred CCCh--hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccc
Q 013368 24 AKSD--DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (444)
Q Consensus 24 ~~~~--~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dt 101 (444)
+.+. +++++++++|++|||+| ++|.++++||.++|+++|++++..+ +.+|+++.++|.+ . |+|+|+|||||
T Consensus 22 ~~~~~~~~~i~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~---~~~~l~a~~~~~~-~-~~i~l~aH~D~ 94 (418)
T 1xmb_A 22 KSPEVFDWMVKIRRKIHENPELG--YEELETSKLIRSELELIGIKYRYPV---AITGVIGYIGTGE-P-PFVALRADMDA 94 (418)
T ss_dssp HSHHHHHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHHTCCEEEEE---TTTEEEEEEESSS-S-CEEEEEEECCC
T ss_pred HhhhcHHHHHHHHHHHHhCCCCC--CChHHHHHHHHHHHHHcCCeeEecc---CCcEEEEEEcCCC-C-CEEEEEecccc
Confidence 3456 88999999999999996 6889999999999999999987643 3569999997653 2 79999999999
Q ss_pred ccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc
Q 013368 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (444)
Q Consensus 102 vp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (444)
||.++ |+.+||++. + +|++||||+ |++++++|.|++.|++.+.+++++|.|+|+++|| |+ .|++.+++++.
T Consensus 95 vp~~~--~~~~pf~~~-~-~g~~~g~G~---d~~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE-g~-~G~~~~~~~g~ 165 (418)
T 1xmb_A 95 LPIQE--GVEWEHKSK-I-AGKMHACGH---DGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEE-GL-SGAKKMREEGA 165 (418)
T ss_dssp BSCCC--CCCSTTCCS-S-TTCBCCSSH---HHHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTT-TT-CHHHHHHHTTT
T ss_pred cCCCC--CCCCCcccC-C-CCceEeCCc---hHHHHHHHHHHHHHHhccccCCceEEEEEecccc-cc-ccHHHHHHcCC
Confidence 99874 999999974 4 899999995 5999999999999999877789999999999999 75 79999999876
Q ss_pred cccCceEEEeccCCCCcCCcc--eeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhc
Q 013368 182 FNSLNVGIVLDEGLASTTEDY--RAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAG 258 (444)
Q Consensus 182 ~~~~d~~~~~~~g~~~p~~~~--~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~ 258 (444)
++++|.+++++.....|++.. .+..+.+|..+++|+++|+++|+|.|+.| ||+..+++++..|+.+.....+
T Consensus 166 ~~~~d~~i~~~~~~~~~~g~~~~~~~~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~a~~i~~l~~~~~~~~~----- 240 (418)
T 1xmb_A 166 LKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETD----- 240 (418)
T ss_dssp TTTEEEEEEEEEEEEEETTCEEECSEEEECEEEEEEEEEEEC---------CCHHHHHHHHHHHHHHTTCBCCSS-----
T ss_pred cCCCCEEEEEecCCCCCCceeEeeeccccccceeEEEEEEecCcccCCCccCCCHHHHHHHHHHHHHHHHhcccC-----
Confidence 655677777664322455432 34567899999999999999999999988 9999999999999876421110
Q ss_pred hhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccc
Q 013368 259 LKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHD 336 (444)
Q Consensus 259 ~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~ 336 (444)
....++++++.++||. +.|+||++|++.+|+|+.+ +.+++.++|+++++.. ..+++++++.
T Consensus 241 ---~~~~~t~~vg~i~gG~------~~NvIP~~a~~~~diR~~~--~~~~i~~~i~~~~~~~a~~~g~~~~~~~------ 303 (418)
T 1xmb_A 241 ---PLDSKVVTVSKVNGGN------AFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNL------ 303 (418)
T ss_dssp ---GGGCEEEEEEEEC--------------CCEEEEEEEEEESS--CHHHHHHHHHHHHHHHHHHTTEEEEEES------
T ss_pred ---CCCCcEEEEEEEEecC------cCCcCCCeEEEEEEEccCc--HHHHHHHHHHHHHHHHHHHhCCeEEEEE------
Confidence 1124689999999997 9999999999999999999 8999999999888632 3567777663
Q ss_pred cCC-CCCccccCCCChHHHHHHHHHHHhcCCCC--CceeecCCcchHHHHhcCCCeE--EEccCCCC--CCCCCCCCccc
Q 013368 337 KFG-RPILTATDSSNPWWNLLEEAVRKANGKLG--KPEIFPASTDARYFRERGLPAI--GFSPMANT--PILLHDHNEFL 409 (444)
Q Consensus 337 ~~~-~p~~~~~~~~~~l~~~~~~a~~~~~~~~~--~~~~~~g~tD~~~~~~~gip~v--~~gp~~~~--~~~~H~~~E~i 409 (444)
... .|+++++.+|+++++.+.++++++.+..+ .+...+|++|++++... +|++ .|||+..+ ...+|++||++
T Consensus 304 ~~~~~~p~~~~~~d~~l~~~~~~~~~~~~g~~~~~~~~~~~g~tD~~~~~~~-~P~~~~~~G~~~~~~~~~~~H~~~E~i 382 (418)
T 1xmb_A 304 TPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAET-IPGHFSLLGMQDETNGYASSHSPLYRI 382 (418)
T ss_dssp SGGGCCCBCCEEECHHHHHHHHHHHHHHHCGGGEEECCCBCCCCTHHHHHTT-SCEEEEEEEEECTTCCSCCTTCTTCCC
T ss_pred ccCCcccCCCccCCHHHHHHHHHHHHHhcCCcceeccCCCCCcchHHHHHHH-CCEEEEEEeCCCCCCCCCCCCCCCCcc
Confidence 122 22233456789999999999999654331 23456789999999876 9984 57887421 23699999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHccc
Q 013368 410 NQAEYLKGIDIYESIIKAYASYV 432 (444)
Q Consensus 410 ~~~~l~~~~~~~~~~l~~l~~~~ 432 (444)
+++++.+++++|+.++.+++...
T Consensus 383 ~~~~l~~~~~~~~~~~~~l~~~~ 405 (418)
T 1xmb_A 383 NEDVLPYGAAIHASMAVQYLKEK 405 (418)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999987644
|
| >3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=413.04 Aligned_cols=360 Identities=17% Similarity=0.175 Sum_probs=291.3
Q ss_pred ChhHHHHHHHhhhcccCCCCCC--------ChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCC-CCCcEEE
Q 013368 26 SDDSIIERFRAYLQIDTSQPNP--------DYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNP-QLPSILL 95 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~--------~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~-~~~~i~l 95 (444)
.++++++++++|++|||+|+.+ +|.++++||.++|+++|++ ++. + ..+||+++++|.++ +.|+|+|
T Consensus 25 ~~~~~~~~l~~lv~i~s~s~~~~~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~-d---~~~nv~a~~~g~~~~~~~~v~l 100 (434)
T 3ife_A 25 MKEELIERFTRYVKIDTQSNEDSHTVPTTPGQIEFGKLLVEELKEVGLTEVTM-D---DNGYVMATLPANTDKDVPVIGF 100 (434)
T ss_dssp HHHHHHHHHHHHHTSCCBCCTTCCSSSSSHHHHHHHHHHHHHHHHHTCEEEEE-C---TTSCEEEEECCBSSSCCCCEEE
T ss_pred HHHHHHHHHHhhEEeeccCCCccCCCCCCHHHHHHHHHHHHHHHHcCCceEEE-C---CCcEEEEEeCCCCCCCCCeEEE
Confidence 3578999999999999998533 6789999999999999997 654 2 46799999987653 4689999
Q ss_pred EeecccccCCCCCCccCCCcceec---------------------------CCCeEEecCc----ccchhHHHHHHHHHH
Q 013368 96 NSHTDVVPSEPSKWSHHPFGAHLD---------------------------SQGNIFARGS----QDMKCVGMQYLEAIR 144 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~---------------------------~~g~l~GrG~----~D~k~~~a~~l~a~~ 144 (444)
+||+||||.. ..|..+||..... .+++|||||+ +|||++++++|.|++
T Consensus 101 ~~H~DtVp~~-~~~~~~p~~~~~~dg~~i~l~~~~~~~~~~~~~~~~~~~~g~~~i~grG~t~~~~D~K~gva~~l~a~~ 179 (434)
T 3ife_A 101 LAHLDTATDF-TGKNVKPQIHENFDGNAITLNEELNIVLTPEQFPELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMN 179 (434)
T ss_dssp EEECCBCTTS-CCSSCCCEEETTCCSSCEEEETTTTEEECTTTCTTGGGGTTSCEEECCSSSCCCHHHHHHHHHHHHHHH
T ss_pred EEEcccCCCC-CCCCCccEEeecCCCCceecccccccccChhhChhHHhhcCCcEEECCCccchhhhhHHHHHHHHHHHH
Confidence 9999999975 4799999865321 0269999998 999999999999999
Q ss_pred HHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCc
Q 013368 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGH 224 (444)
Q Consensus 145 ~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~H 224 (444)
.|++.+..++++|.|+|+++||.| .|++.+... .+ .+|+++++|.+ + ...++++.+|..+++|+++|+++|
T Consensus 180 ~L~~~~~~~~~~i~~if~~~EE~g--~Ga~~~~~~-~~-~~d~~~~~d~~---~--~g~i~~~~~G~~~~~i~v~G~~~H 250 (434)
T 3ife_A 180 YLIHNPQIKHGKIRVAFTPDEEIG--RGPAHFDVE-AF-GASFAYMMDGG---P--LGGLEYESFNAAGAKLTFNGTNTH 250 (434)
T ss_dssp HHHTCTTSCBCCEEEEEESCGGGT--CTGGGCCHH-HH-CCSEEEECCCC---S--TTEEECCBCEEEEEEEEEECBCCC
T ss_pred HHHhCCCCCCCCEEEEEECCcccC--hHHHHhhhh-hc-CCCEEEEecCC---C--CCceeecCCCeEEEEEEEEEEecC
Confidence 999988778999999999999987 488887543 34 46888888742 2 246889999999999999999999
Q ss_pred cC-CCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCC
Q 013368 225 GA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPP 302 (444)
Q Consensus 225 s~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~ 302 (444)
|| .|+.+ ||+..+++++..|+.+... ..++.+++.+++| ..|+||++|++.+|+|+.+
T Consensus 251 ag~~P~~g~nAi~~aa~~i~~l~~~~~~-------------~~~~~~~g~i~~g-------~~n~iP~~a~~~~diR~~~ 310 (434)
T 3ife_A 251 PGTAKNKMRNATKLAMEFNGHLPVEEAP-------------EYTEGYEGFYHLL-------SLNGDVEQSKAYYIIRDFD 310 (434)
T ss_dssp GGGCTTTCBCHHHHHHHHHHTSCTTCSG-------------GGCCTTCCEEEEE-------EEEECSSEEEEEEEEEESS
T ss_pred CCCCcccchhHHHHHHHHHHhcccccCC-------------CcceeeeEEEEee-------eEeEecCeEEEEEEEecCC
Confidence 88 69988 9999999999988765210 1123445566665 6799999999999999999
Q ss_pred CCCHHHHHHHHHHHhccC--CCC---ceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCc
Q 013368 303 TTDAESLERRIVEEWAPA--SRN---MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPAST 377 (444)
Q Consensus 303 ~~~~~~i~~~i~~~~~~~--~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~t 377 (444)
.++.+++.++|+++++.. ..+ +++++.. ...|.+..+.+++++++.+.+++++.+... .+....|++
T Consensus 311 ~~~~~~i~~~i~~~~~~~~~~~g~~~~~v~~~~-------~~~~~~~~~~~d~~l~~~~~~a~~~~G~~~-~~~~~~ggt 382 (434)
T 3ife_A 311 RKNFEARKNTIENIVKQMQEKYGQDAVVLEMND-------QYYNMLEKIEPVREIVDIAYEAMKSLNIEP-NIHPIRGGT 382 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGEEEEEEE-------EECCTHHHHGGGTHHHHHHHHHHHHTTCCC-EECCBSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEEEee-------cccchhccccCCHHHHHHHHHHHHHhCCCC-EEeecccCc
Confidence 999999999999888632 223 4444442 223322235778999999999999965443 444567999
Q ss_pred chHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 378 DARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 378 D~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
|+++|...|+|++.|||+.. .+|++||+++++++.+++++|..++..+++
T Consensus 383 D~~~~~~~GiP~~~~g~g~~---~~H~~~E~i~~~~l~~~~~~~~~~l~~la~ 432 (434)
T 3ife_A 383 DGSQLSYMGLPTPNIFTGGE---NYHGKFEYVSVDVMEKAVQVIIEIARRFEE 432 (434)
T ss_dssp HHHHHHHTTCCCCEECCSEE---STTSTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhCCCcEEEeCCCCC---CCcCCceeecHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999865 599999999999999999999999999865
|
| >1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=403.79 Aligned_cols=364 Identities=16% Similarity=0.154 Sum_probs=281.9
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
..+++++++++|++|||+| ++|.++++||.++|+++|++++..+. +++|+++.++|.++ .|+|+|+||+||||.+
T Consensus 30 ~~~~~i~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~~~--~~~nv~a~~~g~~~-~~~i~l~~H~D~vp~~ 104 (404)
T 1ysj_A 30 FHTRLINMRRDLHEHPELS--FQEVETTKKIRRWLEEEQIEILDVPQ--LKTGVIAEIKGRED-GPVIAIRADIDALPIQ 104 (404)
T ss_dssp HHHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHTTCEECCCTT--CSSCEEEEEECSSC-CCEEEEEEECCCBSCC
T ss_pred HHHHHHHHHHHHHhcCCCC--CChHHHHHHHHHHHHHcCCceEEecc--CCceEEEEEeCCCC-CCEEEEEEecccccCC
Confidence 3578999999999999996 68889999999999999998754332 46799999987543 4899999999999987
Q ss_pred CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccC
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (444)
+ |+.+||++. . +|++||||+ |++++++|.|++.|++.+.+++++|.|+|+++||. + .|++.+++++.++++
T Consensus 105 ~--~~~~Pf~~~-~-~g~l~g~G~---kg~~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~-~-~G~~~~~~~g~~~~~ 175 (404)
T 1ysj_A 105 E--QTNLPFASK-V-DGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEI-A-AGARKVLEAGVLNGV 175 (404)
T ss_dssp C--CCCCTTCCS-S-TTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTT-T-CHHHHHHHTTTTTTE
T ss_pred C--CCCCCcccC-C-CCceEcCcC---hHHHHHHHHHHHHHHhccccCCceEEEEEeccccc-c-hhHHHHHhcCCCcCC
Confidence 4 999999987 4 899999994 79999999999999987767899999999999998 4 699999998766656
Q ss_pred ceEEEeccCCCCcCCcceeeec--ccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 186 NVGIVLDEGLASTTEDYRAFYA--ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 186 d~~~~~~~g~~~p~~~~~i~~~--~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
|.++.++..+..+.+...+..+ .+|..+++|+++|+++|+|.|+.| ||+..+++++..|..+.....+ .
T Consensus 176 d~~i~~h~ep~~~~g~v~~~~g~~~~g~~~~~i~v~G~~~Has~P~~g~nAi~~~~~~i~~l~~~~~~~~~--------~ 247 (404)
T 1ysj_A 176 SAIFGMHNKPDLPVGTIGVKEGPLMASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNIS--------S 247 (404)
T ss_dssp EEEEEEEEETTSCTTEEEECSEEEECCEEEEEEEEECC--------CCCCHHHHHHHHHHHHC-----------------
T ss_pred CEEEEEecCCCCCCceEEeccChhhcccceEEEEEEccCccccCcccCCCHHHHHHHHHHHHHHHHhhhcC--------C
Confidence 7666664211112221222334 578999999999999999999988 9999999999999765321111 1
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeecccccccCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRASLHDKFGR 340 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 340 (444)
...++++++.+++|. +.|+||++|++.+|+|+.+.++.+++.++|+++++. ...+++++++.. ...
T Consensus 248 ~~~~~~~vg~i~gG~------~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~~~------~~~ 315 (404)
T 1ysj_A 248 LQNAVVSITRVQAGT------SWNVIPDQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKWF------PYL 315 (404)
T ss_dssp --CCEEEEEEEEECS------CSSSCCSEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE------EEE
T ss_pred CCCcEEEEEEEEcCC------CCceecCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEe------cCC
Confidence 124689999999987 999999999999999999999999999999988863 235666666531 233
Q ss_pred CCccccCCCChHHHHHHHHHHHh-cCCCCCceeecCCcchHHHHhcCCCeE--EEccCCCCCCCCCCCCccccHHHHHHH
Q 013368 341 PILTATDSSNPWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAI--GFSPMANTPILLHDHNEFLNQAEYLKG 417 (444)
Q Consensus 341 p~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~~~~~g~tD~~~~~~~gip~v--~~gp~~~~~~~~H~~~E~i~~~~l~~~ 417 (444)
|+ ...++++++.+.++++++ .+..+.. ..+|++|+++|... +|++ .|||+... .+|++||+++++++.++
T Consensus 316 ~~---~~~~~~l~~~~~~~~~~~g~g~~~~~-~~~g~tD~~~~~~~-~p~~~~~~G~~~~~--~~H~~~E~v~~~~l~~~ 388 (404)
T 1ysj_A 316 PS---VQNDGTFLNAASEAAARLGYQTVHAE-QSPGGEDFALYQEK-IPGFFVWMGTNGTE--EWHHPAFTLDEEALTVA 388 (404)
T ss_dssp CC---EEECGGGHHHHHHHHHHTTCEEEECC-CBSSCCTHHHHHTT-SCEEEEEEECCCSS--CTTCTTCCCCTTHHHHH
T ss_pred CC---ccCCHHHHHHHHHHHHHhcCCccccc-cCCccchHHHHHHH-CCeEEEEEcCCCCC--CCCCCCCcCCHHHHHHH
Confidence 33 344678999999999998 3432123 56789999999876 9964 78998632 69999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 013368 418 IDIYESIIKAYAS 430 (444)
Q Consensus 418 ~~~~~~~l~~l~~ 430 (444)
+++|+.++.++++
T Consensus 389 ~~~~~~~~~~~~~ 401 (404)
T 1ysj_A 389 SQYFAELAVIVLE 401 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=406.64 Aligned_cols=371 Identities=16% Similarity=0.119 Sum_probs=275.0
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEee------------------------------
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEF------------------------------ 72 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~------------------------------ 72 (444)
.+...+++++++++|+++|+++ .+|.+++++|.++|+++|++++....
T Consensus 9 ~~~~~~~~~~~~~~lh~~Pe~~--~~E~~t~~~i~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 86 (445)
T 3io1_A 9 LRQLAPSMTQWRRDFHLHAESG--WLEFRTASKVADILDGLGYQLALGRDVIDADSRMGLPDEETLARAFERAREQGAPE 86 (445)
T ss_dssp HHTTHHHHHHHHHHHHHTCCCT--TCCHHHHHHHHHHHHHTTCEEEEGGGTSCSTTCCSCCCHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHHHHHHHHCCCeEEecccccccccccccccchhhhhhhhhhccccccc
Confidence 3567789999999999999985 79999999999999999998875310
Q ss_pred -----c-CCCCeEEEEecCCCCCCCcEEEEeecccccCCC-CCCccCCCcc---eecCCCeEEecCcccchhHHHHHHHH
Q 013368 73 -----A-KNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP-SKWSHHPFGA---HLDSQGNIFARGSQDMKCVGMQYLEA 142 (444)
Q Consensus 73 -----~-~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~-~~W~~~Pf~~---~~~~~g~l~GrG~~D~k~~~a~~l~a 142 (444)
. .+++|+++.+.|..+ .|+|+|+||||+||+.+ ..|+++||.. ... +|++||||+ +++++++|.|
T Consensus 87 ~~~~~~~~~~~~vva~~~~~~~-g~~i~l~ah~Davp~~e~~~~~~~Pf~~~~~s~~-~G~~h~cGh---d~~~a~~l~a 161 (445)
T 3io1_A 87 RWLPAFEGGFAGVVATLDTGRP-GPTLAFRVDMDALDLNEQHDDSHRPHRDHFASCN-AGMMHACGH---DGHTAIGLGL 161 (445)
T ss_dssp TTGGGGTTTCCCEEEEEECSSC-CCEEEEEEECCCCCC--------------------------CTT---CTHHHHHHHH
T ss_pred cccccccCCCCEEEEEEeCCCC-CCEEEEEEecCCcCCCCCCCCCcCccccccccCC-CCceEecCc---hHHHHHHHHH
Confidence 0 156899999987544 48999999999999976 7899999986 444 899999996 4899999999
Q ss_pred HHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccc---cEEEEEEEe
Q 013368 143 IRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERC---PWWLVIKAR 219 (444)
Q Consensus 143 ~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G---~~~~~i~v~ 219 (444)
++.|++.+.+++++|.|+|+++||.+ .|++.|++++.++++|++++++.+...|.+ .+.++.+| ..+++|+++
T Consensus 162 a~~L~~~~~~~~g~v~l~f~p~EE~~--~Ga~~~i~~g~~~~~d~~~~~h~~~~~~~g--~i~~~~~g~~a~~~~~i~v~ 237 (445)
T 3io1_A 162 AHVLKQYAAQLNGVIKLIFQPAEEGT--RGARAMVAAGVVDDVDYFTAIHIGTGVPAG--TVVCGGDNFMATTKFDVQFS 237 (445)
T ss_dssp HHHHHHTGGGCCSEEEEEEESCTTTT--CHHHHHHHTTTTTTCSEEEEEEEEEEEETT--BEESCCCCBCEEEEEEEEEE
T ss_pred HHHHHhCcCcCCceEEEEEecccccc--chHHHHHHcCCccccceeEEEeccCCCCCC--eEEEecCCeeEEEEEEEEEE
Confidence 99999887778999999999999954 599999998888788999998864333443 45555555 479999999
Q ss_pred ecCCcc-CCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEE
Q 013368 220 GAPGHG-AKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFD 297 (444)
Q Consensus 220 G~~~Hs-~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d 297 (444)
|+++|+ +.|+.| ||+..+++++..|+.+.+. ..+.++++++.+++|. +.|+||++|++.+|
T Consensus 238 Gk~~HaGs~P~~g~nAi~~aa~~i~~l~~l~~~-----------~~~~~~~~vg~i~gG~------~~NvIP~~a~~~~~ 300 (445)
T 3io1_A 238 GVAAHAGGKPEDGRNALLAAAQAALGLHAIPPH-----------SAGASRVNVGVMQAGT------GRNVVPSSALLKVE 300 (445)
T ss_dssp CCCSSTTCCGGGCCCHHHHHHHHHHHHHTCCCB-----------TTBCEEEEEEEEEECS------CTTSCCCEEEEEEE
T ss_pred eecCCCCCCCcCCcCHHHHHHHHHHHHHHHHhh-----------cCCCeEEEEEEEecCC------CCceeCCeEEEEEE
Confidence 999998 679988 9999999999999887431 1134789999999997 99999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCC-C--Ccee
Q 013368 298 IRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKL-G--KPEI 372 (444)
Q Consensus 298 ~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~-~--~~~~ 372 (444)
+|+.+.++.+.+.++|+++++. ...+++++++.. ...| ++.+|+++++.+.++++++++.. . ....
T Consensus 301 iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~~------~~~~---~~~~d~~l~~~~~~a~~~~~g~~~v~~~~~~ 371 (445)
T 3io1_A 301 TRGESEAINQYVFERAQHVVAGAAAMYEARYELRMM------GAAT---ASAPSPAWVDYLREQAARVPGVQQAVDRIAA 371 (445)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE------EEEC---CCCCCHHHHHHHHHHHHHSTTCCBCBSSCCC
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe------cCCC---CcCCCHHHHHHHHHHHHHhcCCccceecCCC
Confidence 9999999999999999988863 235677776641 2233 35668899999999999986532 1 1122
Q ss_pred ecCCcchHHHHhc----CCC-e-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHccc
Q 013368 373 FPASTDARYFRER----GLP-A-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 432 (444)
Q Consensus 373 ~~g~tD~~~~~~~----gip-~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~~ 432 (444)
..|++|+++|.+. |.| + +.|||+... .+|++||+++++++.+++++|+.++.+++..+
T Consensus 372 ~~g~~D~~~~~~~~P~~gg~~~~~~~G~~~~~--~~H~~~E~i~~~~l~~g~~~~~~~~~~~~~~~ 435 (445)
T 3io1_A 372 PAGSEDATLMMARVQARGGLASYMIFGTELSA--GHHNEKFDFDESVMAVAVETLARVALNFPWQR 435 (445)
T ss_dssp CCBCCTHHHHHHHHHHTTCEEEEEEEEEEC-------------CCCHHHHHHHHHHHHHHTCCSCC
T ss_pred CccHHHHHHHHHHhcccCCceEEEEEeCCCCC--CCCCCCCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 4789999999876 223 3 578887543 69999999999999999999999999886544
|
| >3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=400.77 Aligned_cols=371 Identities=18% Similarity=0.252 Sum_probs=252.6
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCC----------ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec-CCCCCC
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQL 90 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~----------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~-g~~~~~ 90 (444)
+.+.+.+++++++++|++|||+|+.. ++.++++||.++|+++|++++.++ |+++... |. +.
T Consensus 28 ~i~~~~~~~~~~l~~lv~ips~s~~e~~~~~~p~g~~~~~~~~~l~~~l~~~G~~~~~~~------~~~~~~~~g~--~~ 99 (492)
T 3khx_A 28 KVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVD------HIAGRIEAGK--GN 99 (492)
T ss_dssp HHHTTHHHHHHHHHHHHTSCCCCCSSSCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET------TTEEEEEEEC--SS
T ss_pred HHHHhHHHHHHHHHHHhcCCCCCCCcccccccccchHHHHHHHHHHHHHHHcCCcceEeC------CEEEEEEeCC--CC
Confidence 34567899999999999999997422 235899999999999999987542 4454443 43 35
Q ss_pred CcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcc
Q 013368 91 PSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170 (444)
Q Consensus 91 ~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~ 170 (444)
|+|+|+|||||||+++ .|+++||++.++ +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+
T Consensus 100 ~~i~l~~H~D~vp~~~-~w~~~Pf~~~~~-~g~l~GrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~- 176 (492)
T 3khx_A 100 DVLGILCHVDVVPAGD-GWDSNPFEPVVT-EDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDW- 176 (492)
T ss_dssp CEEEEEEECCCCCCCS-CCSSCTTSCEEC-SSEEESTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECCTTCCC-
T ss_pred CEEEEEEeccCCCCCC-CcccCCCceEEE-CCEEEecCCccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccCCC-
Confidence 8999999999999964 799999999997 9999999999999999999999999999988889999999999999997
Q ss_pred ccHHHHHhccccccCceEEEeccCCC--------------------------------------------------CcCC
Q 013368 171 DGAEKFADSHVFNSLNVGIVLDEGLA--------------------------------------------------STTE 200 (444)
Q Consensus 171 ~G~~~~~~~~~~~~~d~~~~~~~g~~--------------------------------------------------~p~~ 200 (444)
.|+++++++.. ..|++++.|...+ +|+.
T Consensus 177 ~g~~~~~~~~~--~~~~~~~~d~~~p~~~g~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~n~vpd~~~aiv~ept~ 254 (492)
T 3khx_A 177 KCTDRYFKTEE--MPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKEN 254 (492)
T ss_dssp CTTSHHHHHSC--CCSEEECSSCSSCSCCCBCEEEEEEEEECCCCCCCCCCSEEEEEEEECSCTTSCCCEEEEEEEECSC
T ss_pred cCHHHHHHhCc--CCCEEEecCCCccEEEecCcEEEEEEEEeccccccccccceeEEecccccCCcCCchHheEeecccc
Confidence 69999998642 1344433332100 1111
Q ss_pred ccee---------eecccccE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhch--hhhhHHHHh------
Q 013368 201 DYRA---------FYAERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKA------ 257 (444)
Q Consensus 201 ~~~i---------~~~~~G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~--~~~~~~~~~------ 257 (444)
...+ ..+.+|.. +++|+++|+++|+|.|+.| |||..+++++.+|.... ...++.+..
T Consensus 255 ~~~~~~~~~~~~~~~g~kG~~~~~~~~~~i~v~GkaaHas~P~~G~NAi~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~ 334 (492)
T 3khx_A 255 MTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSD 334 (492)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEECBCCCC------BCHHHHHHHHHTTSCBCHHHHHHHHHHHHHTTTCT
T ss_pred hHHHHHHHHHHHhhcCceeEEEecCCeEEEEEEeEEcccCCCccCccHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC
Confidence 0000 23458888 9999999999999999989 99999999998875200 011111100
Q ss_pred -c--h-----hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEe
Q 013368 258 -G--L-----KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFK 329 (444)
Q Consensus 258 -~--~-----~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 329 (444)
+ . ......+|+|++.+++|. |++|++.+|+|+.+.++.+++.++|+++++ ..++++++.
T Consensus 335 ~~~~l~i~~~d~~~G~~t~n~g~i~~g~-----------P~~a~~~idiR~~~~~~~~~v~~~i~~~~~--~~g~~~~i~ 401 (492)
T 3khx_A 335 FGEKMGMKFHTDVMGDVTTNIGVITYDN-----------ENAGLFGINLRYPEGFEFEKAMDRFANEIQ--QYGFEVKLG 401 (492)
T ss_dssp TSGGGTCC-------CCEEEEEEEEEET-----------TTCCEEEEEEEECTTCCHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred CccccCCccccCCcCccEEeeeEEEEec-----------CCEEEEEEEeeCCCCCCHHHHHHHHHHHHH--HcCCEEEEe
Confidence 0 0 001124678888777652 999999999999999999999999998886 245666665
Q ss_pred ecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccc
Q 013368 330 QRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFL 409 (444)
Q Consensus 330 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i 409 (444)
. ...|.. .+.++++++.+.++++++.+..+.+...+|+||+++|.. ++|....+|+... .+|++||++
T Consensus 402 ~-------~~~p~~--~~~d~~lv~~l~~a~~~~~G~~~~~~~~gggtDa~~~~~-~v~~G~~fPg~~~--~~H~~dE~v 469 (492)
T 3khx_A 402 K-------VQPPHY--VDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDK-GVAFGAMFSDSED--LMHQKNEYI 469 (492)
T ss_dssp E-------EECCBC--CGGGCHHHHHHHHHHHTTCC--------------------------------------CCSCEE
T ss_pred c-------cCCcee--cCCCcHHHHHHHHHHHHHhCCCCeEEeeehhHHHHHhhC-ceEECCcCCCCCC--CCCCCccCc
Confidence 3 234433 466899999999999998554436667789999999975 4543222266543 699999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHc
Q 013368 410 NQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 410 ~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+++++.+++++|+.++.+|++
T Consensus 470 ~i~~l~~~~~i~~~~l~~l~~ 490 (492)
T 3khx_A 470 TKKQLFNATSIYLEAIYSLCV 490 (492)
T ss_dssp EHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999864
|
| >1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-48 Score=388.30 Aligned_cols=360 Identities=20% Similarity=0.205 Sum_probs=287.6
Q ss_pred hHHHHHHHhhhcccCCCCCC--------ChhHHHHHHHHHHHHCCCc-eEEEeecCCCCeEEEEecCCCC-CCCcEEEEe
Q 013368 28 DSIIERFRAYLQIDTSQPNP--------DYTNASKFILAQAEALSLE-SQTLEFAKNKPLILLKWPGSNP-QLPSILLNS 97 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~--------~e~~~~~~l~~~l~~~G~~-~~~~~~~~~~~nl~~~~~g~~~-~~~~i~l~~ 97 (444)
++++++|++|++|||+|+.+ +|.++++||.++|+++|++ ++. + ..+|+++.++|.++ +.|+|+|+|
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~~~~~~p~~~~e~~~~~~l~~~l~~~G~~~~~~-~---~~~nvia~~~g~~~~~~~~i~l~a 77 (417)
T 1fno_A 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITL-S---EKGTLMATLPANVEGDIPAIGFIS 77 (417)
T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEE-C---TTCCEEEEECCSSCSCCCCEEEEE
T ss_pred hHHHHHHHHhEEecCCCCcccCCCCCCccHHHHHHHHHHHHHHcCCCeEEE-C---CCceEEEEECCCCCCCCCceEEEE
Confidence 46889999999999998533 6889999999999999998 543 2 35699999987542 358999999
Q ss_pred ecccccCCCCCCccCCC-----cce-e---------------------cCCCeEEecCc----ccchhHHHHHHHHHHHH
Q 013368 98 HTDVVPSEPSKWSHHPF-----GAH-L---------------------DSQGNIFARGS----QDMKCVGMQYLEAIRRL 146 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf-----~~~-~---------------------~~~g~l~GrG~----~D~k~~~a~~l~a~~~l 146 (444)
||||||..+ .|..+|| .+. + . ++++||||+ +|||++++++|.|++.|
T Consensus 78 H~D~Vp~~~-~~~~~p~~~~~~~g~~i~~~~g~~~~~~~~~~~~~~~~g-d~~l~grGat~l~~D~K~g~a~~l~a~~~l 155 (417)
T 1fno_A 78 HVDTSPDFS-GKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLG-QTLITTDGKTLLGADDKAGVAEIMTALAVL 155 (417)
T ss_dssp ECCBCTTSC-CSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTT-SCEEECCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred eccccCCCC-CCCCCceEEecCCCCeecccccccccchhhcchhhhhcC-CcEEEcCCccccccccHHhHHHHHHHHHHH
Confidence 999999875 6988885 443 2 3 679999997 99999999999999999
Q ss_pred HHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC
Q 013368 147 KASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA 226 (444)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~ 226 (444)
++.+ .++++|+|+|+++||.| .|++.+++++ + ..|++++++.+ |. ..++++.+|..+++|+++|+++|+|
T Consensus 156 ~~~~-~~~~~v~~~~~~~EE~g--~Ga~~~~~~~-~-~~d~~i~~d~~---~~--g~i~~~~~g~~~~~i~~~G~~~Hs~ 225 (417)
T 1fno_A 156 KGNP-IPHGDIKVAFTPDEEVG--KGAKHFDVEA-F-GAQWAYTVDGG---GV--GELEFENFNAASVNIKIVGNNVHPG 225 (417)
T ss_dssp HSSS-CCCCCEEEEEESCGGGT--CTTTTCCHHH-H-CCSEEEECCCC---ST--TBEECCBCEEEEEEEEEECBCCCGG
T ss_pred HhCC-CCCCcEEEEEEeccccC--CChhhhchhh-c-CCCEEEEeCCC---Cc--CeeEEecCCceeEEEEEEeeccCCC
Confidence 9887 68899999999999987 4888877543 3 35888888753 33 3578899999999999999999999
Q ss_pred -CCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCC
Q 013368 227 -KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTT 304 (444)
Q Consensus 227 -~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~ 304 (444)
.|+.+ ||+..+++++..|..+.... .......+++++.+++| |++|++.+|+|+.+.+
T Consensus 226 ~~p~~g~nAi~~~a~~i~~l~~~~~~~--------~~~~~~~~~~v~~i~gG------------p~~a~~~~d~R~~~~~ 285 (417)
T 1fno_A 226 TAKGVMVNALSLAARIHAEVPADEAPE--------TTEGYEGFYHLASMKGT------------VDRAEMHYIIRDFDRK 285 (417)
T ss_dssp GCTTTCBCHHHHHHHHHHTSCTTSSGG--------GCCTTCCEEEEEEEEEC------------SSEEEEEEEEEESSHH
T ss_pred CCccccCCHHHHHHHHHHhhhccCCcc--------cccccccEEEEEEEeec------------cCeEEEEEEEeCCCHH
Confidence 58888 99999999999887653211 11122346788877764 8999999999999999
Q ss_pred CHHHHHHHHHHHhccC--CCC----ceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcc
Q 013368 305 DAESLERRIVEEWAPA--SRN----MTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTD 378 (444)
Q Consensus 305 ~~~~i~~~i~~~~~~~--~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD 378 (444)
+.+.+.++|+++++.. ..+ +++++.. ...|....+..++++++.+.+++++.+.+. .+....|+||
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~ggtD 357 (417)
T 1fno_A 286 QFEARKRKMMEIAKKVGKGLHPDCYIELVIED-------SYYNMREKVVEHPHILDIAQQAMRDCHITP-EMKPIRGGTD 357 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCTTCCEEEEEEE-------EECCCHHHHHTSTHHHHHHHHHHHHTTCCC-BCCCBSSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCceEEEEEec-------cccchhccccCCCHHHHHHHHHHHHcCCCc-eeccceeccc
Confidence 9999999999888632 222 4554442 122221124678999999999999965443 4456679999
Q ss_pred hHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHccccC
Q 013368 379 ARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYVQH 434 (444)
Q Consensus 379 ~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~~~~ 434 (444)
+++|+..|+|++.|||+.. .+|++||+++++++.+++++|..++..++...+.
T Consensus 358 ~~~~~~~gip~v~~G~~~~---~~H~~~E~i~~~~l~~~~~~~~~~~~~~~~~~~~ 410 (417)
T 1fno_A 358 GAQLSFMGLPCPNLFTGGY---NYHGKHEFVTLEGMEKAVQVIVRIAELTAKRGQL 410 (417)
T ss_dssp HHHHTTTTCCCCEECCSEE---STTSTTCEEEHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHhHHhcCCCEEEEcCCCC---CCCCcccccCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999988999999999865 4899999999999999999999999999876543
|
| >2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=390.12 Aligned_cols=355 Identities=13% Similarity=0.158 Sum_probs=280.4
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCC-C-CCCCcEEEEeeccc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGS-N-PQLPSILLNSHTDV 101 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~-~-~~~~~i~l~~H~Dt 101 (444)
..+.+++++++++|++|||+| ++|.++++||.++|+++|++++.. ...|+++.++|. + ++.|+|+|+||||+
T Consensus 7 ~~~~~~~~~~~~~l~~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~----~~~nv~a~~~g~~g~~~~~~i~l~aH~D~ 80 (487)
T 2qyv_A 7 SLQPKLLWQWFDQICAIPHPS--YKEEQLAQFIINWAKTKGFFAERD----EVGNVLIRKPATVGMENRKPVVLQAHLDM 80 (487)
T ss_dssp CSSSHHHHHHHHHHHHSCCBT--TCCHHHHHHHHHHHHHTTCEEEEC----TTCCEEEEECCCTTCTTBCCEEEEEESCB
T ss_pred ccCHHHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHHHcCCEEEEc----CCCcEEEEeCCCCCCCCCCeEEEEccCCc
Confidence 446788999999999999986 788899999999999999987643 245999999764 2 24589999999999
Q ss_pred ccCCCC----CCccCCCcceecCCCeEEecCcc---cchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 102 VPSEPS----KWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 102 vp~~~~----~W~~~Pf~~~~~~~g~l~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
||.++. +|+++||++.++ +|++||||++ |||++++++|.+++. .+ .++++|.|+|+++||.|+ .|++
T Consensus 81 vp~~~~~~~~~w~~~p~~~~~~-dg~l~g~G~~lgaD~k~g~a~~l~a~~~---~~-~~~~~v~~~~~~~EE~g~-~Ga~ 154 (487)
T 2qyv_A 81 VPQANEGTNHNFDQDPILPYID-GDWVKAKGTTLGADNGIGMASALAVLES---ND-IAHPELEVLLTMTEERGM-EGAI 154 (487)
T ss_dssp CCC----------CCCCCEEEC-SSEEEETTBCCCHHHHHHHHHHHHHHHC---SS-SCCSSEEEEEESCTTTTC-HHHH
T ss_pred cCCCCCCCccccccCCeeEEee-CCEEEeCCCCcCCcCHHHHHHHHHHHHh---CC-CCCCCEEEEEEeccccCC-HHHH
Confidence 999864 899999999997 9999999997 999999999999863 33 367999999999999885 7999
Q ss_pred HHHhccccccCceEEEeccCCCCcCCcceeeeccccc-----------------EEEEEEEee-cCCccCCC-CC-C-CH
Q 013368 175 KFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCP-----------------WWLVIKARG-APGHGAKL-YD-N-SA 233 (444)
Q Consensus 175 ~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~-----------------~~~~i~v~G-~~~Hs~~p-~~-g-na 233 (444)
.+++++ ++ .|+++++|.+. ...++++.+|. .+++|+++| +++|||.| +. + ||
T Consensus 155 ~~~~~~-~~-~d~~~~~d~~~-----~~~i~~g~~g~~~~~~~~~~~~~~~~~g~~~~i~v~G~~~~Hsg~~~~~g~~nA 227 (487)
T 2qyv_A 155 GLRPNW-LR-SEILINTDTEE-----NGEIYIGCAGGENADLELPIEYQVNNFEHCYQVVLKGLRGGHSGVDIHTGRANA 227 (487)
T ss_dssp TCCSSC-CC-CSEEEECCCCC-----TTEEEEEECEEEEEEEEEECCEEECCCSEEEEEEEECCCCCBTTTTTTSCCCCH
T ss_pred HHHHhc-cC-CCEEEEEccCC-----CCeEEEeccCCcceeeeccccccccCCCeEEEEEEEccCCccCCcccccCCCCH
Confidence 988754 44 68888876431 12344444333 789999999 89999987 54 3 99
Q ss_pred HHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEe---------------
Q 013368 234 MENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI--------------- 298 (444)
Q Consensus 234 i~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~--------------- 298 (444)
+..+++++..|..+.+ ..+++++.+++|. ..|+||++|++.+++
T Consensus 228 i~~~~~~i~~l~~~~~---------------~~~~~v~~i~gG~------~~NvIP~~a~~~~~~~~~~~~~~~~~~~~~ 286 (487)
T 2qyv_A 228 IKVLLRFLAELQQNQP---------------HFDFTLANIRGGS------IRNAIPRESVATLVFNGDITVLQSAVQKFA 286 (487)
T ss_dssp HHHHHHHHHHHHHHCT---------------TCCEEEEEEEEES------CTTBCCCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccC---------------CCcEEEEEEeCCC------cCcccCCceEEEEEecCCHHHHHHHHHHHH
Confidence 9999999999976421 2478999999997 899999999999999
Q ss_pred -------------------------ecCCCCCHHHHHHHHHHHhcc----------------------------------
Q 013368 299 -------------------------RVPPTTDAESLERRIVEEWAP---------------------------------- 319 (444)
Q Consensus 299 -------------------------R~~~~~~~~~i~~~i~~~~~~---------------------------------- 319 (444)
|+.+.++.+.+.+.|++++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~i~~~~~gv~~~~~~~~~~~~~s~nl~~~~~~~~~~~~~~~~ 366 (487)
T 2qyv_A 287 DVIKAELALTEPNLIFTLEKVEKPQQVFSSQCTKNIIHCLNVLPNGVVRNSDVIENVVETSLSIGVLKTEDNFVRSTMLV 366 (487)
T ss_dssp HHHHHHTTTTCTTCEEEEEECCCCSEEECHHHHHHHHHHHHHSCCEEEEECSSSTTCEEEEEEEEEEEECSSEEEEEEEE
T ss_pred HHHHHHhccCCCCeEEEEEeccccccccCHHHHHHHHHHHHhCCCcceeeccccCCceEeccceEEEEEcCCeEEEEEEc
Confidence 777777777777777665320
Q ss_pred -------------------CCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchH
Q 013368 320 -------------------ASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDAR 380 (444)
Q Consensus 320 -------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~ 380 (444)
...++++++.. ..|++ ..+.++++++.+.++++++.+..+.+....|++|++
T Consensus 367 R~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~p~~-~~~~d~~l~~~~~~~~~~~~G~~~~~~~~~gg~D~~ 437 (487)
T 2qyv_A 367 RSLIESGKSYVASLLKSLASLAQGNINLSG--------DYPGW-EPQSHSDILDLTKTIYAQVLGTDPEIKVIHAGLECG 437 (487)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCEEEEEE--------EECCB-CCCSCCHHHHHHHHHHHHHHSSCCEEEEESSCCTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCceEEECC--------CCCCC-CCCCCCHHHHHHHHHHHHHhCCCCeEEEEeccccHH
Confidence 01244444442 23444 356689999999999999765443556678999999
Q ss_pred HHHhc--CCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 381 YFRER--GLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 381 ~~~~~--gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+|.+. |+|++.|||+.. .+|++||+++++++.+++++|+.++.++++
T Consensus 438 ~~~~~~pg~~~v~~Gp~~~---~~H~~~E~v~~~~l~~~~~~~~~~l~~l~~ 486 (487)
T 2qyv_A 438 LLKKIYPTIDMVSIGPTIR---NAHSPDEKVHIPAVETYWKVLTGILAHIPS 486 (487)
T ss_dssp HHHHHCTTSEEEECCCCEE---STTSTTCEEEHHHHHHHHHHHHHHHHHCCB
T ss_pred HHHhhCCCCCEEEECCCCC---CCCCCCceeEHHHHHHHHHHHHHHHHHHhc
Confidence 99886 889999999653 599999999999999999999999998753
|
| >3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-47 Score=386.19 Aligned_cols=365 Identities=13% Similarity=0.143 Sum_probs=283.2
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC--CCCCcEEEEeeccc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN--PQLPSILLNSHTDV 101 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~--~~~~~i~l~~H~Dt 101 (444)
..+.+++++++++|++|||+| ++|.++++||.++|+++|++++.. ..+|+++.++|.. .+.|+|+|.||||+
T Consensus 10 ~~~~~~~~~~~~~L~~ips~s--~~e~~~~~~l~~~l~~~G~~v~~~----~~~nv~a~~~g~~g~~~~~~v~l~aH~D~ 83 (490)
T 3mru_A 10 TLSPAPLWQFFDKICSIPHPS--KHEEALAQYIVTWATEQGFDVRRD----PTGNVFIKKPATPGMENKKGVVLQAHIDM 83 (490)
T ss_dssp GSSSHHHHHHHHHHHHSCCBT--TCCTTHHHHHHHHHHHTTCEEEEC----TTCCEEEEECCCTTCTTCCCEEEEEECCB
T ss_pred ccCHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHcCCEEEEc----CCCeEEEEEcCCCCCCCCCeEEEEeccCC
Confidence 346789999999999999986 788999999999999999987642 3459999998652 24689999999999
Q ss_pred ccCCC----CCCccCCCcceecCCCeEEecCcc---cchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 102 VPSEP----SKWSHHPFGAHLDSQGNIFARGSQ---DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 102 vp~~~----~~W~~~Pf~~~~~~~g~l~GrG~~---D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
||..+ ..|+++||++.++ +|++||||++ |||+++|++|++++ + ...++++|.|+|+++||.|+ .|++
T Consensus 84 vp~~~~~~~~~w~~~p~~~~~~-~g~l~g~G~~lgaD~k~g~a~~l~~l~---~-~~~~~~~v~~~~~~~EE~g~-~Ga~ 157 (490)
T 3mru_A 84 VPQKNEDTDHDFTQDPIQPYID-GEWVTAKGTTLGADNGIGMASCLAVLA---S-KEIKHGPIEVLLTIDEEAGM-TGAF 157 (490)
T ss_dssp CCCBCTTSCCCTTTCCCCEEEE-TTEEEETTBCCCHHHHTTHHHHHHHHH---C-SSCCCCSEEEEEESCSSSTT-GGGG
T ss_pred CCCCCCCcccccccCCceEEee-CCeEecCCCccCCCCHHHHHHHHHHHH---h-CCCCCCCEEEEEEccccccc-HhHH
Confidence 99975 2799999999998 9999999996 99999999998763 2 33468999999999999985 7999
Q ss_pred HHHhccccccCceEEEeccCCC----------CcCCc---ceeeecccccEEEEEEEee-cCCccCC-CCCC--CHHHHH
Q 013368 175 KFADSHVFNSLNVGIVLDEGLA----------STTED---YRAFYAERCPWWLVIKARG-APGHGAK-LYDN--SAMENL 237 (444)
Q Consensus 175 ~~~~~~~~~~~d~~~~~~~g~~----------~p~~~---~~i~~~~~G~~~~~i~v~G-~~~Hs~~-p~~g--nai~~~ 237 (444)
.+++. .+ ..++++++|.+.. .|+.. .....+++|..+++|+++| +++|||. |+.| ||+..+
T Consensus 158 ~~~~~-~~-~~~~~~~~d~~~~g~~~~g~~~g~~~~~~~~~~~~~~~~g~~~~~i~v~G~~~gHs~~~p~~g~~nai~~~ 235 (490)
T 3mru_A 158 GLEAG-WL-KGDILLNTDSEQEGEVYMGCAGGIDGAMTFDITRDAIPAGFITRQLTLKGLKGGHSGCDIHTGRGNANKLI 235 (490)
T ss_dssp TCCSS-SC-CSSEEEECCCCCTTCCEEEECEEEEEEEEEECCEECCCTTEEEEEEEEECCCCEETTTSSSSCCCCHHHHH
T ss_pred Hhhhc-cc-CCCEEEEcCCCCCCeEEEecCCccceEEEeeeeeeccCCCceEEEEEEECCCCcccccccccCCcCHHHHH
Confidence 98875 34 3578888875311 01000 0012467899999999999 9999996 7776 999999
Q ss_pred HHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHh
Q 013368 238 FKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEW 317 (444)
Q Consensus 238 ~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~ 317 (444)
++++..|+. ..+++++.++||. +.|+||++|++.+++|..+.+..+++.+++.+.+
T Consensus 236 ~~~l~~l~~------------------~~~~~v~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~~~~~~~~~~ 291 (490)
T 3mru_A 236 GRFLAGHAQ------------------ELDLRLVEFRGGS------LRNAIPREAFVTVALPAENQDKLAELFNYYTELL 291 (490)
T ss_dssp HHHHHHHTT------------------TTTCEEEEEEECS------CTTEECCCEEEEEEEEGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------------------cCcEEEEEEECCC------CCcccCCccEEEEEECcccHHHHHHHHHHHHHHH
Confidence 999998864 1358899999997 9999999999999999876655555555555443
Q ss_pred cc----CCCCceEEEee------------------------------------------------------------ccc
Q 013368 318 AP----ASRNMTFEFKQ------------------------------------------------------------RAS 333 (444)
Q Consensus 318 ~~----~~~~~~~~~~~------------------------------------------------------------~~~ 333 (444)
+. ..++++++++. +.+
T Consensus 292 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~~~~~~~g~v~~S~n~gv~~~~~~~~~~~~~~R~~ 371 (490)
T 3mru_A 292 KTELGKIETDIVTFNEEVATDAQVFAIADQQRFIAALNACPNGVMRMSDEVEGVVETSLNVGVITTEENKVTVLCLIRSL 371 (490)
T ss_dssp HHHHTTTCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHSCCEEEEECTTTTSCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred HHHhhccCCCeEEEEEecCCccccCCHHHHHHHHHHHHHCCCccceeccccCCCeeEEEEEEEEEEeCCEEEEEEEcCCC
Confidence 21 11222221111 000
Q ss_pred ---------------------ccc-cCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhc--CCCe
Q 013368 334 ---------------------LHD-KFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRER--GLPA 389 (444)
Q Consensus 334 ---------------------~~~-~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~--gip~ 389 (444)
.++ ...+|++ ..+.++++++.+.++++++.+..+.+...+|++|+++|+.. ++|+
T Consensus 372 ~~~~~~~i~~~l~~~~~~~g~~~~~~~~~p~~-~~~~d~~lv~~l~~a~~~~~G~~~~~~~~ggg~d~~~~~~~~p~~~~ 450 (490)
T 3mru_A 372 IDSGRSQVEGMLQSVAELAGAQIEFSGAYPGW-KPDADSEIMAIFRDMYEGIYGHKPNIMVIHAGLECGLFKEPYPNMDM 450 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCEEEEEEEECCB-CCCTTCHHHHHHHHHHHTTSSSCCCCEEESSCCHHHHTTSSCTTCEE
T ss_pred CchHHHHHHHHHHHHHHHcCCeEEecCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeEEEEEecHHHHHHHHhCCCCCE
Confidence 000 1234444 35778999999999999996654477788899999999987 7789
Q ss_pred EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 390 IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 390 v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+.|||+.. .+|+|||+++++++.++.++|..+|.++..
T Consensus 451 v~fGp~~~---~~H~p~E~v~i~~l~~~~~~l~~~l~~l~~ 488 (490)
T 3mru_A 451 VSFGPTIK---FPHSPDEKVKIDTVQLFWDQMVALLEAIPE 488 (490)
T ss_dssp EECCCCEE---STTSTTCEEEHHHHHHHHHHHHHHHHHCCC
T ss_pred EEECCCCC---CCCCCCccccHHHHHHHHHHHHHHHHHhhh
Confidence 99999765 499999999999999999999999998753
|
| >1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=378.87 Aligned_cols=370 Identities=18% Similarity=0.271 Sum_probs=275.0
Q ss_pred CCChhHHHHHHHhhhcccCCCCCC----------ChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNP----------DYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSI 93 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~----------~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i 93 (444)
+.+.+++++++++|++|||+|... ++.++++||.++|+++|++++.. +..++++.+ |. +.|+|
T Consensus 10 ~~~~~~~~~~l~~l~~ips~s~~~~~~~~~p~~~~~~~~~~~l~~~l~~~G~~~~~~----~~~~~~~~~-g~--~~~~i 82 (470)
T 1lfw_A 10 EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENF----ANYAGRVNF-GA--GDKRL 82 (470)
T ss_dssp HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEE----TTTEEEEEE-CC--CSSEE
T ss_pred HHhHHHHHHHHHHHcCCCCcCCCccccccCCCcHHHHHHHHHHHHHHHHcCCeEEEe----cCeEEEEEe-CC--CCCeE
Confidence 457789999999999999997321 23689999999999999988743 345778877 54 34899
Q ss_pred EEEeecccccCCCCCCccCCCccee-cCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcccc
Q 013368 94 LLNSHTDVVPSEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (444)
Q Consensus 94 ~l~~H~Dtvp~~~~~W~~~Pf~~~~-~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (444)
+|+|||||||.++ .|+++||++.+ + +|++||||++|||++++++|.|++.|++.+.+++++|.|+|+++||.|+ .|
T Consensus 83 ~l~~H~D~vp~~~-~w~~~Pf~~~~~~-~g~l~grG~~D~K~~~a~~l~a~~~l~~~~~~~~~~i~~i~~~~EE~g~-~G 159 (470)
T 1lfw_A 83 GIIGHMDVVPAGE-GWTRDPFKMEIDE-EGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNW-VG 159 (470)
T ss_dssp EEEEECCBCCCCS-CCSSCTTSCEECT-TCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTC-HH
T ss_pred EEEEeecccCCCC-CccCCCcceeEee-CCEEECCCcccChHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCcccCC-cc
Confidence 9999999999975 89999999999 8 9999999999999999999999999999888889999999999999885 69
Q ss_pred HHHHHhcccccc----CceE--EEecc-CCC------C-c--CCc-----------ceee-------e------------
Q 013368 173 AEKFADSHVFNS----LNVG--IVLDE-GLA------S-T--TED-----------YRAF-------Y------------ 206 (444)
Q Consensus 173 ~~~~~~~~~~~~----~d~~--~~~~~-g~~------~-p--~~~-----------~~i~-------~------------ 206 (444)
++.+++++.... .|.. +++.. |.. . + .+. ..++ +
T Consensus 160 ~~~~~~~~~~~~~~~~~D~~~~~~~ge~g~~~~~l~~~~~~~~g~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~ 239 (470)
T 1lfw_A 160 IDYYLKHEPTPDIVFSPDAEYPIINGEQGIFTLEFSFKNDDTKGDYVLDKFKAGIATNVTPQVTRATISGPDLEAVKLAY 239 (470)
T ss_dssp HHHHHHHSCCCSEEEESSEESSEEEEECEEEEEEEEECCCCCCCSBEEEEEEECSBTTBCCSEEEEEEECSCHHHHHHHH
T ss_pred HHHHHHhCcCCcEEEEeCCCceEEEeccceEEEEEEEccCCcCCCcceeeeecCCcCCcccccceEEecccchHHHHHHH
Confidence 999988643210 1210 11110 000 0 0 000 0011 1
Q ss_pred -------cccccE-----EEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhch--hhhhHHHHhch--hccC------
Q 013368 207 -------AERCPW-----WLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFR--ASQFDLVKAGL--KAEG------ 263 (444)
Q Consensus 207 -------~~~G~~-----~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~--~~~~~~~~~~~--~~~~------ 263 (444)
+.+|.. +++|+++|+++|++.|+.+ ||+..+++++..|..-. ....+.+...+ ...+
T Consensus 240 ~~~~~~~~~~G~~~~~~~~~~i~v~G~~~Ha~~P~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (470)
T 1lfw_A 240 ESFLADKELDGSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIF 319 (470)
T ss_dssp HHHHHHHTCEEEEEEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCC
T ss_pred HHHhhhhccccceeecCCcEEEEEeecccCCCCCccCccHHHHHHHHHHhCCCcchhHHHHHHHHHhcCCCCcccccCCc
Confidence 345665 8999999999999999988 99999999988774100 01111111000 0000
Q ss_pred ------CceeeeeeeeccCCCCCCCcccccccCc-eEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccc
Q 013368 264 ------EVVSVNMAFLKAGTPSPNGFVMNLQPSE-AEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHD 336 (444)
Q Consensus 264 ------~~~t~~~~~i~~G~~~~~~~~~n~ip~~-~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~ 336 (444)
..++++++.+ |.+|++ |++++|+|+.+.++.+.+.++|+++++. ++++++.
T Consensus 320 ~~~~~~~~~t~~~g~i------------~~~p~~~a~~~~diR~~~~~~~~~i~~~i~~~~~~---g~~v~~~------- 377 (470)
T 1lfw_A 320 HHDDLMGDLASSPSMF------------DYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFSG---ILDVTYN------- 377 (470)
T ss_dssp CEETTTEECEEEEEEE------------EEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHTT---TEEEECS-------
T ss_pred ccccccccceEEEEEE------------EEcCCceEEEEEEEecCCCCCHHHHHHHHHHHhcC---CeEEEEE-------
Confidence 1234555444 456899 9999999999999999999999998864 5554433
Q ss_pred cCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCC-CCCCCCCCCccccHHHHH
Q 013368 337 KFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMAN-TPILLHDHNEFLNQAEYL 415 (444)
Q Consensus 337 ~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~-~~~~~H~~~E~i~~~~l~ 415 (444)
...|++ .+++|+++++.+.++++++.+..+.+..++|++|++++. |++.|||+.. ....+|++||+++++++.
T Consensus 378 -~~~~~~-~~~~d~~l~~~~~~a~~~~~g~~~~~~~~~g~~d~~~~~----~~v~~G~~~pg~~~~~H~~~E~i~~~~l~ 451 (470)
T 1lfw_A 378 -GFEEPH-YVPGSDPMVQTLLKVYEKQTGKPGHEVVIGGGTYGRLFE----RGVAFGAQPENGPMVMHAANEFMMLDDLI 451 (470)
T ss_dssp -CCBCCE-ECCTTCHHHHHHHHHHHHHHCCCCCEEEESSCCGGGGST----TCEECCEECTTCCCCTTSTTCEEEHHHHH
T ss_pred -eCCCce-eeCCCCHHHHHHHHHHHHHcCCCCceeeecCHhHHHhCC----CeEEECCCCCCCCCCCCCCCcceEHHHHH
Confidence 234443 356799999999999999755443556678999999985 6899997531 123699999999999999
Q ss_pred HHHHHHHHHHHHHHcc
Q 013368 416 KGIDIYESIIKAYASY 431 (444)
Q Consensus 416 ~~~~~~~~~l~~l~~~ 431 (444)
+++++|+.++.+++..
T Consensus 452 ~~~~~~~~~~~~l~~~ 467 (470)
T 1lfw_A 452 LSIAIYAEAIYELTKD 467 (470)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999998753
|
| >3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=365.76 Aligned_cols=350 Identities=16% Similarity=0.145 Sum_probs=275.5
Q ss_pred CCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccc
Q 013368 23 PAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (444)
Q Consensus 23 ~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtv 102 (444)
.+...+++++++++|+++||+| ++|.++++||.++|+++|++++... ...++|++++++|.++ .|+|+|+||||||
T Consensus 11 ~~~~~~~~~~~~~~l~~~pe~s--~~E~~~~~~i~~~l~~~G~~v~~~~-~g~~~~via~~~g~~~-g~~i~l~ah~D~v 86 (394)
T 3ram_A 11 IETNKYSYIEISHRIHERPELG--NEEIFASRTLIDRLKEHDFEIETEI-AGHATGFIATYDSGLD-GPAIGFLAEYDAL 86 (394)
T ss_dssp HHHTHHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHTTCEEEEEE-TTEEEEEEEEEECSSS-SCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCC--cchHHHHHHHHHHHHHcCCeEEeCC-CCCceEEEEEEeCCCC-CCEEEEEEecccC
Confidence 3456789999999999999986 7899999999999999999987543 2225799999987544 4899999999999
Q ss_pred cCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH-HHHhccc
Q 013368 103 PSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE-KFADSHV 181 (444)
Q Consensus 103 p~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~-~~~~~~~ 181 (444)
|. ++|+||. |++ .+++|.|++.|++.+.+++++|.|+|+++||.++..|++ .|++.+.
T Consensus 87 pg------------------~~ha~G~-d~~--~a~~l~aa~~L~~~~~~~~g~v~~~f~~~EE~~~~~Ga~~~~~~~g~ 145 (394)
T 3ram_A 87 PG------------------LGHACGH-NII--GTASVLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGV 145 (394)
T ss_dssp TT------------------TSSTTCH-HHH--HHHHHHHHHHHHTTHHHHCSEEEEEECCCTTCCTTCCHHHHHHHHTG
T ss_pred CC------------------cceECCc-cHH--HHHHHHHHHHHHHhHhhCCceEEEEEECCccCCCCCchHHHHHHcCC
Confidence 92 2356774 554 467788899998765568899999999999987336999 9999887
Q ss_pred cccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccC-CCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhch
Q 013368 182 FNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGA-KLYDN-SAMENLFKSIESVRRFRASQFDLVKAGL 259 (444)
Q Consensus 182 ~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~-~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~ 259 (444)
++++|.+++++. +....+..+.+|..+++|+++|+++|+| .|+.| ||+..+++++..|..+...
T Consensus 146 ~~~~d~~~~~h~-----~~~~~~~~~~~g~~~~~i~v~Gk~~Ha~~~P~~g~nAi~~a~~~i~~l~~l~~~--------- 211 (394)
T 3ram_A 146 IDQIDIALMIHP-----GNETYKTIDTLAVDVLDVKFYGKSAHASENADEALNALDAMISYFNGVAQLRQH--------- 211 (394)
T ss_dssp GGGCSEEECCEE-----ESSBBCCCCBCEEEEEEEEEECBCCBHHHHGGGCBCHHHHHHHHHHHHHHHGGG---------
T ss_pred cccCCEEEEECC-----ccccCCCccccceeEEEEEEEccccccCCCCcCCCCHHHHHHHHHHHHHHHHhh---------
Confidence 777888888763 2223456678999999999999999999 89999 9999999999999876431
Q ss_pred hccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeeccccccc
Q 013368 260 KAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDK 337 (444)
Q Consensus 260 ~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 337 (444)
....++++++.+++|. +.|+||++|++.+|+|+.+.++.+.+.++|+++++.. .++++++++..
T Consensus 212 --~~~~~~~~~~~i~gG~------~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~ei~~~------ 277 (394)
T 3ram_A 212 --IKKDQRVHGVILDGGK------AANIIPDYTHARFYTRAMTRKELDILTEKVNQIARGAAIQTGCDYEFGPI------ 277 (394)
T ss_dssp --SCTTCEEEEEEEEBCS------CTTBCCSEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEES------
T ss_pred --CCCCCeeEEEEEECCC------CCceeCCeEEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe------
Confidence 1122457777788887 9999999999999999999999999999999888632 35677776630
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCC-CceeecCCcchHHHHhcCCCeEEE--ccCCCCCCCCCCCCcc------
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLG-KPEIFPASTDARYFRERGLPAIGF--SPMANTPILLHDHNEF------ 408 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~-~~~~~~g~tD~~~~~~~gip~v~~--gp~~~~~~~~H~~~E~------ 408 (444)
.+.++++.+|+++++.+.+++++++ ... ......|++|+++|++ .+|++.+ |.+.. ....|++ |+
T Consensus 278 --~~~~~~~~~d~~l~~~~~~a~~~~G-~~~~~~~~~~g~~D~~~~~~-~~P~~~~~~g~~~~-~~~~H~~-ef~~~~~~ 351 (394)
T 3ram_A 278 --QNGVNEFIKTPKLDDLFAKYAEEVG-EAVIDDDFGYGSTDTGNVSH-VVPTIHPHIKIGSR-NLVGHTH-RFREAAAS 351 (394)
T ss_dssp --SCCBCCCCCCHHHHHHHHHHHHHTT-CCBCCSCCCCBCCTHHHHTT-TSCBCCCEEECSCT-TCCTTSH-HHHHHTTS
T ss_pred --cCCCCCccCCHHHHHHHHHHHHHhC-cccccCCCCcccccHHHHHH-HhchheEEeeecCC-CCCCCCH-HHHhccCC
Confidence 1122235678999999999999876 431 2345678999999985 4997633 22211 1258999 77
Q ss_pred -ccHHHHHHHHHHHHHHHHHHHcc
Q 013368 409 -LNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 409 -i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
++.+++..++++|+.++.+++.-
T Consensus 352 ~~~~~~l~~g~~~la~~~~~~l~~ 375 (394)
T 3ram_A 352 VHGDEALIKGAKIMALMGLELITN 375 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999998753
|
| >3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=351.39 Aligned_cols=348 Identities=15% Similarity=0.130 Sum_probs=277.0
Q ss_pred ChhHHHHHHHhhhcccCCCC--------CCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEe
Q 013368 26 SDDSIIERFRAYLQIDTSQP--------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~--------~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
+.+++++++++|++|+|.+. +++|.++++||.++|+++|++++.. ...|+++.++|.+++.|+|+|.+
T Consensus 3 ~~~~~~~~l~~l~~i~s~~~~g~~r~~~s~~e~~~~~~l~~~l~~~g~~~~~d----~~gnv~a~~~g~~~~~~~i~l~a 78 (408)
T 3n5f_A 3 QGERLWQRLMELGEVGKQPSGGVTRLSFTAEERRAKDLVASYMREAGLFVYED----AAGNLIGRKEGTNPDATVVLVGS 78 (408)
T ss_dssp CHHHHHHHHHHHHTTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHHTCEEEEC----TTCCEEEEECCSSTTSCEEEEEE
T ss_pred CHHHHHHHHHHHHccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEc----CCCCEEEEecCCCCCCCEEEEEe
Confidence 46889999999999999642 5789999999999999999988752 23499999988765468999999
Q ss_pred ecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----ccccH
Q 013368 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGA 173 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~ 173 (444)
|||+||.+ |..|+|+|++++|.+++.|++.+.+++++|.|+|+++||.+ ++.|+
T Consensus 79 H~D~v~~~----------------------g~~d~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~~~~~~g~~Gs 136 (408)
T 3n5f_A 79 HLDSVYNG----------------------GCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGS 136 (408)
T ss_dssp ESCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCSSCTTTTCCCHHH
T ss_pred cCCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCCcCH
Confidence 99999963 45799999999999999999988888999999999999963 34699
Q ss_pred HHHHhc------------cc---------------c-----c--cCceEEEecc--CCC-Cc-CCcceeeecccccEEEE
Q 013368 174 EKFADS------------HV---------------F-----N--SLNVGIVLDE--GLA-ST-TEDYRAFYAERCPWWLV 215 (444)
Q Consensus 174 ~~~~~~------------~~---------------~-----~--~~d~~~~~~~--g~~-~p-~~~~~i~~~~~G~~~~~ 215 (444)
+.++.. +. + + ++|.++.++. |.. ++ .....++.+.+|..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~lhi~~g~~le~~~~~~gi~~~~~g~~~~~ 216 (408)
T 3n5f_A 137 RAMAGTLPPEALECRDAEGISLAEAMKQAGLDPDRLPQAARKPGTVKAYVELHIEQGRVLEETGLPVGIVTGIAGLIWVK 216 (408)
T ss_dssp HHHHTCCCGGGGSCBCTTCCBHHHHHHHTTCCGGGGGGGCCCTTTEEEEEEEEECSSSHHHHHTCSEEEEEEECEEEEEE
T ss_pred HHHHcCCCHHHhhccCCCCCCHHHHHHHhCCChhhhhhcccCccCccEEEEEeeccchhHHHcCCCeEEEEEeccceEEE
Confidence 988731 11 1 1 2343444432 210 11 11356788899999999
Q ss_pred EEEeecCCcc-CCCC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCCCCCcccccccCc
Q 013368 216 IKARGAPGHG-AKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (444)
Q Consensus 216 i~v~G~~~Hs-~~p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~~~~~~~n~ip~~ 291 (444)
|+++|+++|+ +.|+ .+ ||+..+++++..|+.+... . . .++++++.+++| . +.|+||++
T Consensus 217 i~v~G~~~Hags~P~~~g~nAi~~aa~~i~~l~~~~~~----~-------~-~~~~~vg~i~gG~~------~~NvIP~~ 278 (408)
T 3n5f_A 217 FTIEGKAEHAGATPMSLRRDPMAAAAQIIIVIEEEARR----T-------G-TTVGTVGQLHVYPG------GINVIPER 278 (408)
T ss_dssp EEEECCCEETTTSCTTTCCCHHHHHHHHHHHHHHHHHH----H-------S-SCEEEEEEEEEESC------CTTEECSE
T ss_pred EEEEEEcCcCCCCccccccCHHHHHHHHHHHHHHHHHh----c-------C-CcEEEEEEEEecCC------CCcCcCCe
Confidence 9999999999 5795 77 9999999999999876421 1 1 468999999987 5 89999999
Q ss_pred eEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCC
Q 013368 292 AEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGK 369 (444)
Q Consensus 292 ~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 369 (444)
|++.+|+|+.+.++.+++.++|+++++. ..++++++++.. ...|+ +.+|+++++.+.+++++++.+. .
T Consensus 279 a~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~~------~~~p~---~~~d~~l~~~~~~a~~~~g~~~-~ 348 (408)
T 3n5f_A 279 VEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTERL------QEMPP---VLCSDEVKRAAEAACQKLGYPS-F 348 (408)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE------EEECC---EECCHHHHHHHHHHHHHHTCCC-C
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEEe------cCCCC---cCCCHHHHHHHHHHHHHcCCCc-c
Confidence 9999999999999999999999988763 234667766641 23333 3567899999999999985443 4
Q ss_pred ceeecCCcchHHHHhcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 370 PEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 370 ~~~~~g~tD~~~~~~~gip~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+....|++|+++|.+. +|+ +.|+|+... ..|+++|+++++++.+++++|+.++.++++
T Consensus 349 ~~~~~ggtD~~~~~~~-iP~~~~~~~~~~~--~~H~~~E~i~~~~l~~~~~~~~~~~~~l~~ 407 (408)
T 3n5f_A 349 WLPSGAAHDSVQLAPI-CPIGMIFVRSQDG--VSHSPAEWSTKEDCAAGAEVLYHTVWQLAQ 407 (408)
T ss_dssp EEEESSCCTTTTTTTT-SCEEEEEECCGGG--CCSSTTCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCcCchHHHHHHHH-CCEEEEEeCCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHhc
Confidence 4566799999999887 997 577787653 599999999999999999999999998853
|
| >2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=356.39 Aligned_cols=350 Identities=15% Similarity=0.170 Sum_probs=277.0
Q ss_pred CCChhHHHHHHHhh-hcccCCC-----C----------CCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC
Q 013368 24 AKSDDSIIERFRAY-LQIDTSQ-----P----------NPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN 87 (444)
Q Consensus 24 ~~~~~~~~~~l~~l-~~i~s~s-----~----------~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~ 87 (444)
..+.++++++|++| ++|||+| + +++|.++++||.++|+++|++++. + ...|++++++|.+
T Consensus 28 ~~~~~~~~~~l~~L~v~i~s~s~~~~~~~~~g~~r~~~s~~e~~~~~~l~~~l~~~G~~v~~-d---~~gnvia~~~g~~ 103 (474)
T 2v8h_A 28 SIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKV-D---KIGNMFAVYPGKN 103 (474)
T ss_dssp CCCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHTTCEEEE-B---TTCCEEEEECCSS
T ss_pred cCCHHHHHHHHHHHhhhcCCccccccccccCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEE-e---cCceEEEEECCCC
Confidence 46788999999999 9999985 1 357889999999999999998764 2 3458999998765
Q ss_pred CCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 88 PQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 88 ~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
++ ++|+|+|||||||.++ | .|+|++++++|+|++.|++.+.+++++|.|+|+++||.
T Consensus 104 ~~-~~i~l~~H~DtVp~~g--~--------------------~D~k~gvaa~L~a~~~L~~~~~~~~~~v~lif~~dEE~ 160 (474)
T 2v8h_A 104 GG-KPTATGSHLDTQPEAG--K--------------------YDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNAEG 160 (474)
T ss_dssp CC-SCEEEEECCCCCSSBC--S--------------------STTHHHHHHHHHHHHHHHHHTCCCSSCEEEEECTTCSC
T ss_pred CC-CeEEEEEecccCCCCC--C--------------------cCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCccC
Confidence 43 6899999999999741 2 39999999999999999999888899999999999998
Q ss_pred C----ccccHHHHHhccc--------------------------c----------ccCceEEEecc--CCC-C-cCCcce
Q 013368 168 G----GHDGAEKFADSHV--------------------------F----------NSLNVGIVLDE--GLA-S-TTEDYR 203 (444)
Q Consensus 168 g----~~~G~~~~~~~~~--------------------------~----------~~~d~~~~~~~--g~~-~-p~~~~~ 203 (444)
+ ++.|++.+.+... + .+++..+.++. +.. . ......
T Consensus 161 ~~~~~g~~Gs~~l~~~~~~~~~~~~~d~~~~dg~~~~e~l~~~G~~~~~~~~~~~e~~~~~~~lHi~~g~~l~~~g~~~~ 240 (474)
T 2v8h_A 161 ARFARSCTGSSVWSHDLSLEEAYGLMSVGEDKPESVYDSLKNIGYIGDTPASYKENEIDAHFELHIEQGPILEDENKAIG 240 (474)
T ss_dssp SSSSCTTHHHHHHTTSSCHHHHHTCBCSSCSSCCBHHHHHHHHTCCCSBCSCTTTSCCSEEEEEEECCSSHHHHTTCSEE
T ss_pred CCCCCCcccHHHHHhccCHhhhhhhcccccccCccHHHHHHhcCCcccccccccccchhhheeeeeccCccccccCCcce
Confidence 3 3468998865110 0 11233333321 100 0 001346
Q ss_pred eeecccccEEEEEEEeecCCccCC-CC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCC
Q 013368 204 AFYAERCPWWLVIKARGAPGHGAK-LY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPS 279 (444)
Q Consensus 204 i~~~~~G~~~~~i~v~G~~~Hs~~-p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~ 279 (444)
++.+.+|..+++|+++|+++|||. |+ .+ ||+..+++++..|..+... . .++++++.+++| .
T Consensus 241 i~~~~~G~~~~~i~v~G~~~Hsg~~P~~~g~nAi~~~a~~i~~l~~~~~~----------~---~~t~~vg~i~gG~~-- 305 (474)
T 2v8h_A 241 IVTGVQAYNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQR----------H---NGLFTCGIIDAKPY-- 305 (474)
T ss_dssp EEEEECEEEEEEEEEECCCEETTTCCGGGCCCHHHHHHHHHHHHHHHHHH----------T---TCEEECCCEEEESC--
T ss_pred eEEeecceEEEEEEEEeecCCCCCCCcccCCCHHHHHHHHHHHHHHHHhh----------c---CCEEEEEEEEecCC--
Confidence 778889999999999999999995 87 67 9999999999999765321 0 468999999987 5
Q ss_pred CCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccC--C---CCceEEEeecccccccCCCCCccccCCCChHHH
Q 013368 280 PNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA--S---RNMTFEFKQRASLHDKFGRPILTATDSSNPWWN 354 (444)
Q Consensus 280 ~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~---~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 354 (444)
+.|+||++|++.+|+|+.+.++.+++.++|+++++.. . ++++++++. ....|+ +..++++++
T Consensus 306 ----~~NvIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~~~~~~~~g~~~~~~~------~~~~~~---~~~d~~l~~ 372 (474)
T 2v8h_A 306 ----SVNIIPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYESET------LQVSPA---VNFHEVCIE 372 (474)
T ss_dssp ----CTTEECSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEEEEE------EEEECC---EECCHHHHH
T ss_pred ----CCceeCCEEEEEEEecCCChHHHHHHHHHHHHHHHHHHhhcccCCcEEEEEE------ecCCCC---ccCCHHHHH
Confidence 8999999999999999999999999999999888642 2 567776664 123343 345789999
Q ss_pred HHHHHHHHhcCC-CCCceeecCCcchHHHHhcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHcc
Q 013368 355 LLEEAVRKANGK-LGKPEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 355 ~~~~a~~~~~~~-~~~~~~~~g~tD~~~~~~~gip~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.+.+++++++.. .+.+...+|++|+++|+.. +|+ +.|||+... .+|++||+++++++.+++++|+.++.+++..
T Consensus 373 ~~~~a~~~~G~~~~~~~~~~~ggtD~~~~~~~-~P~~~~fgp~~~~--~~H~p~E~i~~~~l~~~~~~~~~~l~~l~~~ 448 (474)
T 2v8h_A 373 CVSRSAFAQFKKDQVRQIWSGAGHDSCQTAPH-VPTSMIFIPSKDG--LSHNYYEYSSPEEIENGFKVLLQAIINYDNY 448 (474)
T ss_dssp HHHHHHHHHSCGGGEEEEEESSCCTHHHHTTT-SCEEEEEECCGGG--CCSSTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcceecCCcCCccHHHHHhh-CCEEEEEeCCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999413 3355667899999999987 997 789998553 6999999999999999999999999998753
|
| >1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=356.88 Aligned_cols=352 Identities=14% Similarity=0.146 Sum_probs=276.5
Q ss_pred CChhHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEE
Q 013368 25 KSDDSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLN 96 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~ 96 (444)
.+.++++++|++|++|||+|+. ++|.++++||.++|+++|++++.. ...|++++++|.+++.|+|+|+
T Consensus 6 ~~~~~~~~~l~~lv~i~s~s~~g~~~~~~s~~e~~~~~~i~~~l~~~G~~v~~~----~~gnv~a~~~g~~~~~~~i~l~ 81 (423)
T 1z2l_A 6 HFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFD----EVGNLYGRLNGTEYPQEVVLSG 81 (423)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEEC----TTSCEEEEECCSSEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHhcCCCCCCCcccCcCCHHHHHHHHHHHHHHHHcCCEEEEe----cCCcEEEEEcCCCCCCCEEEEE
Confidence 3568899999999999998732 468899999999999999987642 2349999998764434899999
Q ss_pred eecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----cccc
Q 013368 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDG 172 (444)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G 172 (444)
|||||||.+ |..|+|++++++|.|++.|++.+.+++++|.|+|+++||.+ ++.|
T Consensus 82 ~H~D~Vp~~----------------------g~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~i~~~~EE~~~~~~g~~G 139 (423)
T 1z2l_A 82 SHIDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWG 139 (423)
T ss_dssp EECCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHH
T ss_pred EecCCCCCC----------------------CccCCHHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcCccccccCCCccc
Confidence 999999963 34699999999999999999988788999999999999985 2358
Q ss_pred HHHHHh----cccc-----------------------------ccCceEEEeccCC---CCcCC-cceeeecccccEEEE
Q 013368 173 AEKFAD----SHVF-----------------------------NSLNVGIVLDEGL---ASTTE-DYRAFYAERCPWWLV 215 (444)
Q Consensus 173 ~~~~~~----~~~~-----------------------------~~~d~~~~~~~g~---~~p~~-~~~i~~~~~G~~~~~ 215 (444)
++.+.. ++.+ .++|..+.++... .+|++ ...++.+.+|..+++
T Consensus 140 s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~~~~~~~p~~~~~~~~~~~~h~~~~~~~e~~~~~~~~~~~~~g~~~~~ 219 (423)
T 1z2l_A 140 SKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYT 219 (423)
T ss_dssp HHHHTTCCCGGGTSSCCCSSSCCHHHHHHHTTCCCCSSCCCCCCCEEEEEEEEECCSSHHHHTTCCEEEEEEECEEEEEE
T ss_pred HHHHHcCCCHHHHhhhcCcCCcCHHHHHHHcCCccccccccCCCCceEEEEEEeccCchHHHCCCCeEEEeeEecceEEE
Confidence 988876 2111 0123333332210 01221 356778899999999
Q ss_pred EEEeecCCccC-CCC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccC-CCCCCCcccccccCc
Q 013368 216 IKARGAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAG-TPSPNGFVMNLQPSE 291 (444)
Q Consensus 216 i~v~G~~~Hs~-~p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G-~~~~~~~~~n~ip~~ 291 (444)
|+++|+++||| .|+ .+ ||+..+++++..|+.+... . .+.++++++.+++| . +.|+||++
T Consensus 220 i~v~G~~~Ha~~~P~~~g~nAi~~~a~~i~~l~~~~~~----~-------~~~~~~~vg~i~gg~~------~~NvIP~~ 282 (423)
T 1z2l_A 220 VTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKR----M-------GDPLVLTFGKVEPRPN------TVNVVPGK 282 (423)
T ss_dssp EEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH----H-------CTTCEEECCCEEEESC------CTTEECCE
T ss_pred EEEEeEcCCCCCCccccCcCHHHHHHHHHHHHHHHHHh----c-------CCCceEEEEEEeecCC------cceeECCE
Confidence 99999999999 586 67 9999999999999765321 0 12468999999987 4 89999999
Q ss_pred eEEEEEeecCCCCCHHHHHHHHHHHhccC--CCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCC
Q 013368 292 AEAGFDIRVPPTTDAESLERRIVEEWAPA--SRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGK 369 (444)
Q Consensus 292 ~~~~~d~R~~~~~~~~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~ 369 (444)
|++.+|+|+.+.++.+++.++|+++++.. ..+++++++. ....|+ ...++++++.+.+++++++.+. .
T Consensus 283 a~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~g~~~~~~~------~~~~~~---~~~~~~l~~~~~~~~~~~g~~~-~ 352 (423)
T 1z2l_A 283 TTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDL------WMDEEP---VPMNKELVATLTELCEREKLNY-R 352 (423)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE------EEEECC---EECCHHHHHHHHHHHHHTTCCE-E
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE------ecCCCC---ccCCHHHHHHHHHHHHHcCCCe-E
Confidence 99999999999999999999998887632 3456666653 123333 3457899999999999984433 4
Q ss_pred ceeecCCcchHHHHhcCCCe-EEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHccc
Q 013368 370 PEIFPASTDARYFRERGLPA-IGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYASYV 432 (444)
Q Consensus 370 ~~~~~g~tD~~~~~~~gip~-v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~~~ 432 (444)
+...+|++|+++|... +|+ +.|||+... .+|++||+++++++.+++++|+.++.+++...
T Consensus 353 ~~~~~ggtD~~~~~~~-~p~~~~~~p~~~~--~~H~~~E~i~~~~l~~~~~~~~~~~~~l~~~~ 413 (423)
T 1z2l_A 353 VMHSGAGHDAQIFAPR-VPTCMIFIPSING--ISHNPAERTNITDLAEGVKTLALMLYQLAWQK 413 (423)
T ss_dssp EEEESSCCTHHHHTTT-SCEEEEEECCGGG--CCSSTTCCCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EecCCCcccHHHHHhh-CCEEEEEeCCCCC--CCCCccccCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 5567799999999887 897 588998653 59999999999999999999999999997654
|
| >3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=293.31 Aligned_cols=261 Identities=20% Similarity=0.303 Sum_probs=209.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
+.+++++++++|++|||+| ++|.++++||.++|+++|++++.++.. +++|+++.+ |. +.|+|+|+|||||||.+
T Consensus 4 ~~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~-~~~nv~a~~-g~--~~~~i~l~~H~D~vp~~ 77 (268)
T 3t68_A 4 TDSPVLALAKELISRQSVT--PADAGCQDLMIERLKALGFEIESMVFE-DTTNFWARR-GT--QSPLFVFAGHTDVVPAG 77 (268)
T ss_dssp CCCHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHHTTCEECCCEET-TEEC-CEEE-CS--SSCEEEEEEECCBCCCC
T ss_pred cHHHHHHHHHHHhCCCCCC--CCchHHHHHHHHHHHHCCCeEEEEecC-CccEEEEEe-CC--CCCeEEEEccccccCCC
Confidence 4578999999999999997 567789999999999999988765543 567999998 54 35899999999999998
Q ss_pred C-CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc--cc
Q 013368 106 P-SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH--VF 182 (444)
Q Consensus 106 ~-~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~--~~ 182 (444)
+ +.|+++||++.++ +|++||||+.|||++++++|.|++.|++.+.+++++|.++|+++||.|+..|++.+++.. ..
T Consensus 78 ~~~~w~~~pf~~~~~-~g~~~g~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~~~ 156 (268)
T 3t68_A 78 PLSQWHTPPFEPTVI-DGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARN 156 (268)
T ss_dssp CGGGCSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCTTSSSCCHHHHHHHHHHHTT
T ss_pred CcccCCCCCCccEEE-CCEEEecCcccchHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCccCcccCHHHHHHHHHhcC
Confidence 7 7899999999998 999999999999999999999999999887778899999999999998645999998753 12
Q ss_pred ccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 183 ~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
...|++++++.+.....+ ..+..+.+|.
T Consensus 157 ~~~d~~i~~ept~~~~~~-~~i~~g~~G~--------------------------------------------------- 184 (268)
T 3t68_A 157 ELIDMCIVGEPSSTLAVG-DVVKNGRRGG--------------------------------------------------- 184 (268)
T ss_dssp CCCCEEEECSCCBSSSTT-SEEEECCGGG---------------------------------------------------
T ss_pred CCCCEEEEeCCCCCccCC-ceeEEecCCC---------------------------------------------------
Confidence 346888888643211100 1233333333
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
. .
T Consensus 185 -------------------------------------------------------------------p-----------~ 186 (268)
T 3t68_A 185 -------------------------------------------------------------------G-----------F 186 (268)
T ss_dssp -------------------------------------------------------------------G-----------T
T ss_pred -------------------------------------------------------------------c-----------c
Confidence 1 1
Q ss_pred ccccCCCChHHHHHHHHHHHh-cCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKA-NGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~-~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
. . +++++++.+.+++++. +..+ .....+|+||+++++..|+|++.|||+.. ..|+++|+++.+++.++++++
T Consensus 187 ~--~-~~~~l~~~l~~a~~~~~gi~~-~~~~sgggtD~~~~~~~g~p~~~~~~~~~---~~Hs~~E~v~~~d~~~~~~vl 259 (268)
T 3t68_A 187 L--T-DTGELLAAVVAAVEEVNHQAP-ALLTTGGTSDGRFIAQMGAQVVELGPVNA---TIHKVNECVRIADLEKLTDMY 259 (268)
T ss_dssp S--C-CCCHHHHHHHHHHHHHHSSCC-EEESSCCCHHHHHHHHHTCEEEECCSBCT---TTTSTTCEEEHHHHHHHHHHH
T ss_pred c--C-CchHHHHHHHHHHHHHhCCCc-EEecCccccHHHHHHhcCCCEEEEeeCCC---CCCCccccccHHHHHHHHHHH
Confidence 1 1 1357999999999985 5544 33445689999999999999999999876 479999999999999999999
Q ss_pred HHHHHHHHc
Q 013368 422 ESIIKAYAS 430 (444)
Q Consensus 422 ~~~l~~l~~ 430 (444)
..++.+|+.
T Consensus 260 ~~~l~~l~~ 268 (268)
T 3t68_A 260 QKTLNHLLG 268 (268)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999998863
|
| >4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=285.75 Aligned_cols=259 Identities=20% Similarity=0.308 Sum_probs=204.3
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
.+++++++++|++|||+| ++|.++++||.++|+++|++++.++.. +++|+++.+ |. +.|+|+|+||+||||.++
T Consensus 5 ~~~~~~~l~~lv~ips~s--~~e~~~~~~l~~~l~~~G~~~~~~~~~-~~~nv~a~~-g~--~~~~i~l~~H~D~vp~~~ 78 (269)
T 4h2k_A 5 KEKVVSLAQDLIRRPSIS--PNDEGCQQIIAERLEKLGFQIEWMPFN-DTLNLWAKH-GT--SEPVIAFAGHTDVVPTGD 78 (269)
T ss_dssp HHHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCBT-TBCEEEEEE-CS--SSCEEEEEEECCBCCCCC
T ss_pred HHHHHHHHHHHhCCCCCC--CCcHHHHHHHHHHHHHcCCeEEEEEcC-CceEEEEEe-CC--CCCEEEEEeeecccCCCC
Confidence 367899999999999997 567789999999999999998866543 578999988 54 358999999999999987
Q ss_pred -CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc--cc
Q 013368 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV--FN 183 (444)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~~ 183 (444)
+.|+++||++.++ +|++||||+.|||++++++|.|++.|++.+.+++++|.|+|+++||.|+..|++.+++... ..
T Consensus 79 ~~~w~~~pf~~~~~-~g~~~grG~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~Ga~~~~~~~~~~~~ 157 (269)
T 4h2k_A 79 ENQWSSPPFSAEII-DGMLYGRGAADMKGSLAAMIVAAEEYVKANPNHKGTIALLITSDEEATAKDGTIHVVETLMARDE 157 (269)
T ss_dssp GGGCSSCTTSCCEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTC
T ss_pred cccccCCCCCeEEE-CCEEEeCCcccChHHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCcccCHHHHHHHHHhcCC
Confidence 7899999999998 9999999999999999999999999998877788999999999999986459999887531 23
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccC
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~ 263 (444)
..|++++.+.......+ ..+..+++|.
T Consensus 158 ~~d~~i~~Ept~~~~~~-~~i~~g~~G~---------------------------------------------------- 184 (269)
T 4h2k_A 158 KITYCMVGEPSSAKNLG-DVVKNGRRGG---------------------------------------------------- 184 (269)
T ss_dssp CCCEEEECCCCBSSSTT-SEEECSCTTC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCcCC-ceeEEecccc----------------------------------------------------
Confidence 45778887532110000 0122222222
Q ss_pred CceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCc
Q 013368 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPIL 343 (444)
Q Consensus 264 ~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (444)
+ +.
T Consensus 185 -----------------------------------------------------------G----~~-------------- 187 (269)
T 4h2k_A 185 -----------------------------------------------------------G----FL-------------- 187 (269)
T ss_dssp -----------------------------------------------------------C--------------------
T ss_pred -----------------------------------------------------------c----cc--------------
Confidence 0 01
Q ss_pred cccCCCChHHHHHHHHHHH-hcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 344 TATDSSNPWWNLLEEAVRK-ANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 344 ~~~~~~~~l~~~~~~a~~~-~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
..++++++.+.+++++ .+..+ .....+|+||+++++..|+|++.|||+.. ..|+++|+++++++.+++++|.
T Consensus 188 ---~~~~~l~~~l~~aa~~~~gi~~-~~~~~gggtDa~~~~~~g~p~~~~~~~~~---~~Hs~~E~v~~~d~~~~~~ll~ 260 (269)
T 4h2k_A 188 ---TKPGKLLDSITSAIEETIGITP-KAETGGGTSDGRFIALMGAEVVEFGPLNS---TIHKVNECVSVEDLGKCGEIYH 260 (269)
T ss_dssp -------HHHHHHHHHHHHHHSCCC-EEECC--CHHHHHHHTTTCEEEECCSBCT---TTTSTTCEEEHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHhCCCC-EEecCCCCchHHHHHhhCCCEEEEEeCCC---CCcCCcccccHHHHHHHHHHHH
Confidence 1124688889998888 45544 33455689999999999999999999885 4799999999999999999999
Q ss_pred HHHHHHH
Q 013368 423 SIIKAYA 429 (444)
Q Consensus 423 ~~l~~l~ 429 (444)
.++.+++
T Consensus 261 ~~l~~l~ 267 (269)
T 4h2k_A 261 KMLVNLL 267 (269)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998875
|
| >1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=262.79 Aligned_cols=192 Identities=49% Similarity=0.907 Sum_probs=163.7
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccccc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP 103 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp 103 (444)
..+.+++++++++|++|||+|++++|.++++||+++|+++|++++.++...+++|+++.++|.+++.|+|+|+||+||||
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s~~~~e~~~~~~l~~~l~~~g~~~~~~~~~~g~~~~i~~~~g~~~~~~~ill~aH~DtVp 85 (198)
T 1q7l_A 6 PEEEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLGCQKVEVAPGYVVTVLTWPGTNPTLSSILLNSHTDVVP 85 (198)
T ss_dssp -CCCCHHHHHHHHHHTSCCBTTSCCHHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEEECCSSTTSCEEEEEEECCBCC
T ss_pred chhHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHCCCeEEEEEcCCCCeEEEEEEccCCCCCCeEEEEeeecccC
Confidence 34667899999999999999854578899999999999999998876643466799999987654458999999999999
Q ss_pred CCCCCCccCCCccee-cCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcccc
Q 013368 104 SEPSKWSHHPFGAHL-DSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVF 182 (444)
Q Consensus 104 ~~~~~W~~~Pf~~~~-~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~ 182 (444)
.+++.|+++||++.+ + +|++||||++|||++++++|+|++.|++.+.+++++|.|+|+++||.|+..|++++++++.+
T Consensus 86 ~~~~~w~~~pf~~~~~~-~g~l~GrGa~D~K~g~a~~l~a~~~l~~~~~~~~~~v~~~~~~~EE~g~~~Ga~~~~~~~~~ 164 (198)
T 1q7l_A 86 VFKEHWSHDPFEAFKDS-EGYIYARGAQDMKCVSIQYLEAVRRLKVEGHRFPRTIHMTFVPDEEVGGHQGMELFVQRPEF 164 (198)
T ss_dssp CCGGGCSSCTTTCCBCT-TSEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEEESCGGGTSTTTHHHHTTSHHH
T ss_pred CCcccCccCCCeeeEcc-CCEEEeCcchhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEEcccccCccccHHHHHHhHHh
Confidence 987789999999987 6 99999999999999999999999999998878899999999999999855799999986543
Q ss_pred ccCceEEEeccCCCCcCCcceeeecccccEEEEE
Q 013368 183 NSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVI 216 (444)
Q Consensus 183 ~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i 216 (444)
...+..+++|.|..+|+....+++++||..+++|
T Consensus 165 ~~~~~~~~id~g~~ept~~~~v~~~~kG~~~~~v 198 (198)
T 1q7l_A 165 HALRAGFALDEGIANPTDAFTVFYSERSPWWVRV 198 (198)
T ss_dssp HTTCEEEEEECCCCCSSSSEEEEECCSSCGGGCC
T ss_pred ccCCcCEEEecCccCCCCCceEEEEccEEEEEEC
Confidence 3334556778777789876689999999887653
|
| >2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=236.19 Aligned_cols=255 Identities=14% Similarity=0.152 Sum_probs=173.9
Q ss_pred HHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC-------
Q 013368 33 RFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE------- 105 (444)
Q Consensus 33 ~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~------- 105 (444)
+|++|+++||+| ++|.+++++|+++|+++|++++.. ...|+++.++|.+ +.|+|+|.||||+||.-
T Consensus 3 ~l~~L~~~~s~s--g~e~~~~~~l~~~l~~~g~~~~~d----~~gnlia~~~g~~-~~~~v~l~aH~D~v~~~v~~i~~~ 75 (340)
T 2fvg_A 3 YLKELSMMPGVS--GDEGKVRDFIKSKIEGLVDNLYTD----VLGNLIALKRGRD-SSKKLLVSAHMDEVGFVVSKIEKD 75 (340)
T ss_dssp CHHHHHHSCCBT--TCCHHHHHHHHHHHGGGSSEEEEC----TTSCEEEEECCSE-EEEEEEEEEECCBCEEEEEEECTT
T ss_pred HHHHHHcCCCCC--CchHHHHHHHHHHHHhhCCEEEEe----CCCcEEEEecCCC-CCceEEEEeccCcCcEEEEEECCC
Confidence 588999999986 788899999999999999987642 3459999987642 24789999999999930
Q ss_pred -------CCCCccCCCcce-----------------------------------------------ecCC----------
Q 013368 106 -------PSKWSHHPFGAH-----------------------------------------------LDSQ---------- 121 (444)
Q Consensus 106 -------~~~W~~~Pf~~~-----------------------------------------------~~~~---------- 121 (444)
..+|..+||.+. ++.+
T Consensus 76 G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~i~~~~~h~~~~~~~~~~~~~~l~id~g~~s~~e~~~~i~~gd~v~~~~~~~ 155 (340)
T 2fvg_A 76 GKVSFLPVGGVDPRILPGKVVQVKNLKGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEAKKYVSIGDYVSFVSDYI 155 (340)
T ss_dssp SCEEEEEESCCCGGGCTTCEEEETTEEEEEEECC-----------CCSTTEEEECSCSSHHHHHTTCCTTCEEEECCCCE
T ss_pred CEEEEEeeCCcccccccCCEEEECcEEEEEcCCCccccchhhccCCCcccEEEEeCCCCHHHHHhhCCCCCEEEEccCce
Confidence 137999998773 2114
Q ss_pred ---CeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCc
Q 013368 122 ---GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAST 198 (444)
Q Consensus 122 ---g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p 198 (444)
+++||| ++|||++++++|.|++.|+ ++++++.++++.+||.|+ .|++.+++. +. .|+++++|..
T Consensus 156 ~~~~~i~gr-a~D~k~g~a~~l~a~~~l~----~~~~~i~~~~~~~EE~G~-~G~~~~~~~--~~-~~~~i~~d~~---- 222 (340)
T 2fvg_A 156 EKNGRAVGK-AFDDRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGL-RGSAVVVEQ--LK-PTCAIVVETT---- 222 (340)
T ss_dssp EETTEEEES-CHHHHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC------CHHHHHH--HC-CSEEEEEEEE----
T ss_pred eecCEEeec-cCccHHHHHHHHHHHHHhh----ccCCcEEEEEEcccccch-hhhHHHhhc--cC-CCEEEEEecc----
Confidence 999999 9999999999999999875 367999999999999986 799988773 32 4788888732
Q ss_pred CCcceeeecccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCC
Q 013368 199 TEDYRAFYAERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGT 277 (444)
Q Consensus 199 ~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~ 277 (444)
. .. ++.|+++|++.|+.| ||+. . .. ..+.
T Consensus 223 -~-~~-------------~~~G~~~h~~~~~~G~g~~i------------~---------------------~~--~~~~ 252 (340)
T 2fvg_A 223 -T-AG-------------DNPELEERKWATHLGDGPAI------------T---------------------FY--HRGY 252 (340)
T ss_dssp -E-EC-------------SCSTTCCSSSSCCTTSCCEE------------C---------------------SC--CSSS
T ss_pred -c-CC-------------CCCCCccccCCcccCCCcEE------------E---------------------Ee--CCCC
Confidence 1 11 467888898777766 6431 0 00 0000
Q ss_pred CCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHH
Q 013368 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLE 357 (444)
Q Consensus 278 ~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 357 (444)
..| ..+.+.+ +
T Consensus 253 ------~~~--------------------~~l~~~l-------------------------------------------~ 263 (340)
T 2fvg_A 253 ------VIP--------------------KEIFQTI-------------------------------------------V 263 (340)
T ss_dssp ------CCC--------------------HHHHHHH-------------------------------------------H
T ss_pred ------CCC--------------------HHHHHHH-------------------------------------------H
Confidence 000 1133333 3
Q ss_pred HHHHHhcCCCCCc-eeecCCcchHHHHh--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 358 EAVRKANGKLGKP-EIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 358 ~a~~~~~~~~~~~-~~~~g~tD~~~~~~--~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
+++++.+... .. ...+++||++.+.. .|+|++.|||+.. .+|+++|+++++++..++++|..++..++.
T Consensus 264 ~~a~~~gi~~-~~~~~~~ggtDa~~~~~~~~GiP~v~~g~~~~---~~Hs~~E~v~~~dl~~~~~ll~~~~~~l~~ 335 (340)
T 2fvg_A 264 DTAKNNDIPF-QMKRRTAGGTDAGRYARTAYGVPAGVISTPAR---YIHSPNSIIDLNDYENTKKLIKVLVEEGKI 335 (340)
T ss_dssp HHHHHTTCCC-EECCCC-------------CCSCEEEEEEEEE---ESSTTCEEEEHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHcCCCe-EEEecCCCCccHHHHHhhCCCCcEEEeccccc---ccCChhhcccHHHHHHHHHHHHHHHHhccc
Confidence 3333333222 11 13468899999986 7999999999875 399999999999999999999999998764
|
| >2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=211.61 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=184.7
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccccc------
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP------ 103 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp------ 103 (444)
.+++|++|+++||+| ++|.+++++|+++|+++|+ ++. + +..|+++.++| +.|+|+|.||+|+|+
T Consensus 4 ~~~~l~~l~~~~s~s--g~e~~~~~~l~~~l~~~g~-~~~-d---~~gnlia~~~~---~~~~i~l~aH~D~v~~~v~~i 73 (332)
T 2wyr_A 4 MIEKLKKFTQIPGIS--GYEERIREEIIREIKDFAD-YKV-D---AIGNLIVELGE---GEERILFMAHMDEIGLLITGI 73 (332)
T ss_dssp HHHHHHHHHTSCCBT--TCCHHHHHHHHHHHTTTCC-CEE-C---TTCCEEEEEES---SSEEEEEEEECCBCEEEEEEE
T ss_pred HHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhhcCc-EEE-c---CCCeEEEEecC---CCceEEEEeccCcccEEEEEE
Confidence 678999999999986 7788999999999999999 553 2 56799999876 247899999999995
Q ss_pred ----------CCCCCCcc--------------------------------------------------------------
Q 013368 104 ----------SEPSKWSH-------------------------------------------------------------- 111 (444)
Q Consensus 104 ----------~~~~~W~~-------------------------------------------------------------- 111 (444)
.+ +|..
T Consensus 74 ~~~G~l~~~~~G--g~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~~id~g~~~~~~~~~~i~~Gd 151 (332)
T 2wyr_A 74 TDEGKLRFRKVG--GIDDRLLYGRHVNVVTEKGILDGVIGATPPHLSLERDKSVIPWYDLVIDIGAESKEEALELVKPLD 151 (332)
T ss_dssp CTTSCEEEEEES--CCCGGGTTTEEEEEECSSCEEEEEECCCCTTC-----CCCCCGGGCCBBCSCSSHHHHHHHCCTTC
T ss_pred CCCCeEEEEecC--CcChhhccCCEEEEEcCCCCEEEEEcCCCcccChhhhccCCChHHEEEEeCCCCHHHHHhhCCCCC
Confidence 33 2432
Q ss_pred -----CCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCc
Q 013368 112 -----HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (444)
Q Consensus 112 -----~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d 186 (444)
+||.. .. ++++||| ++|||++++++|+|++.|++.+ ++++|.++|+++||.|+ .|++.+++ .+ ..|
T Consensus 152 ~~~~~~~~~~-~~-~~~i~gr-a~D~k~g~a~~l~a~~~l~~~~--~~~~i~~~~~~~EE~G~-~G~~~~~~--~~-~~~ 222 (332)
T 2wyr_A 152 FAVFKKHFSV-LN-GKYVSTR-GLDDRFGVVALIEAIKDLVDHE--LEGKVIFAFTVQEEVGL-KGAKFLAN--HY-YPQ 222 (332)
T ss_dssp EEEECCCCEE-ET-TTEEECT-THHHHHHHHHHHHHHHTTTTSC--CSSEEEEEEESCGGGTS-HHHHHHTT--TC-CCS
T ss_pred EEEEccccEE-ec-CCeEEcc-cCCcHHHHHHHHHHHHHHhhcC--CCceEEEEEECccccCc-chHHHHhc--cc-CCC
Confidence 23433 35 8999999 9999999999999999988765 56999999999999986 79998865 23 257
Q ss_pred eEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCce
Q 013368 187 VGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVV 266 (444)
Q Consensus 187 ~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~ 266 (444)
+++++|.+.. . ..+| + .. ..+.
T Consensus 223 ~~i~~d~~~~------~---~~p~--------------------~--------------~~-------------~lg~-- 244 (332)
T 2wyr_A 223 YAFAIDSFAC------C---SPLT--------------------G--------------DV-------------KLGK-- 244 (332)
T ss_dssp EEEEECCEEC------C---SGGG--------------------T--------------TC-------------CTTS--
T ss_pred EEEEEecccc------c---CCCC--------------------C--------------ce-------------eeCC--
Confidence 8888874221 0 0111 0 00 0000
Q ss_pred eeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCcccc
Q 013368 267 SVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTAT 346 (444)
Q Consensus 267 t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 346 (444)
|. . +.+.. . ..
T Consensus 245 ---------G~------~-----------------------------------------i~~~d---------~----~~ 255 (332)
T 2wyr_A 245 ---------GP------V-----------------------------------------IRAVD---------N----SA 255 (332)
T ss_dssp ---------CC------E-----------------------------------------EEEEC---------S----SC
T ss_pred ---------CC------E-----------------------------------------EEEcC---------C----CC
Confidence 10 0 00011 0 13
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 013368 347 DSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426 (444)
Q Consensus 347 ~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~ 426 (444)
..++++++.+.+++++.+... .....+++||+++++. |+|++.|||+.. ..|+++|+++++++.++++++..++.
T Consensus 256 ~~~~~l~~~l~~~~~~~gi~~-~~~~~~ggtDa~~~~~-GiPtv~lg~~~~---~~Hs~~E~v~~~dl~~~~~ll~~~~~ 330 (332)
T 2wyr_A 256 IYSRDLARKVWSIAEKNGIEI-QIGVTGGGTDASAFQD-RSKTLALSVPIK---YLHSEVETLHLNDLEKLVKLIEALAF 330 (332)
T ss_dssp BCCHHHHHHHHHHHHHTTCCC-EEEECSSCCGGGGGTT-TSEEEEEECEEB---SCSSTTCEEEHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCe-EEecCCCCchHHHHHc-CCCEEEEcCCcC---CCCChhhcccHHHHHHHHHHHHHHHH
Confidence 446789999999999986554 4445668999999998 999999999865 49999999999999999999999887
Q ss_pred HH
Q 013368 427 AY 428 (444)
Q Consensus 427 ~l 428 (444)
.+
T Consensus 331 ~l 332 (332)
T 2wyr_A 331 EL 332 (332)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=214.09 Aligned_cols=263 Identities=17% Similarity=0.196 Sum_probs=190.0
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC--
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS-- 104 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~-- 104 (444)
.++++++|++|+++||+| ++|.+++++|+++|+++|++++.. ...|+++.++|.. +.|+|+|.||||+|+.
T Consensus 6 ~~~~~~~l~~L~~~~s~s--g~e~~~~~~l~~~l~~~g~~~~~d----~~gnlia~~~g~~-~~~~vll~aH~D~v~~~v 78 (373)
T 1vhe_A 6 LDETLTMLKDLTDAKGIP--GNEREVRQVMKSYIEPFADEVTTD----RLGSLIAKKTGAE-NGPKIMIAGHLDEVGFMV 78 (373)
T ss_dssp CCHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHGGGCSEEEEC----TTCCEEEEEESST-TSCEEEEEEECCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCC--CchHHHHHHHHHHHHhhCCEEEEc----CCCcEEEEecCCC-CCceEEEEecCCcCCEEE
Confidence 357899999999999986 788899999999999999987642 3559999887753 3489999999999992
Q ss_pred --------------C----------------CC-------CCccCC----------------------------------
Q 013368 105 --------------E----------------PS-------KWSHHP---------------------------------- 113 (444)
Q Consensus 105 --------------~----------------~~-------~W~~~P---------------------------------- 113 (444)
+ .+ .|..+.
T Consensus 79 ~~i~~~G~l~~~~~Gg~~~~~~~~~~v~v~~~~g~~~g~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~s~~~~~~~gi~ 158 (373)
T 1vhe_A 79 TQITDKGFIRFQTVGGWWAQVMLAQRVTIVTKKGEITGVIGSKPPHILSPEARKKSVEIKDMFIDIGASSREEALEWGVL 158 (373)
T ss_dssp EEECTTSCEEEEEESCCCGGGTTTCEEEEEETTEEEEEEEECCCGGGSCTTTTTSCCCGGGCEEECSCSSHHHHHHTTCC
T ss_pred EEECCCCeEEEEEeCCcchhhccCCEEEEEeCCCcEEEEEcCCCcccCchhhccCCCChhHeEEEecCCCHHHHHHcCCC
Confidence 1 11 143111
Q ss_pred ----------CcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccc
Q 013368 114 ----------FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (444)
Q Consensus 114 ----------f~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (444)
|....+ ++++||| ++|||++++++|.|++.|++.+ ++++|.++|+++||.|+ .|++.+.. .+.
T Consensus 159 ~Gd~v~~~~~~~~~~~-~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~--~~~~v~~~~~~~EE~G~-~G~~~~~~--~~~ 231 (373)
T 1vhe_A 159 PGDMIVPHFEFTVMNN-EKFLLAK-AWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGL-RGAKTAAH--TIQ 231 (373)
T ss_dssp TTCEEEECCCCEECSS-TTEEEET-THHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTS-HHHHHHHH--HHC
T ss_pred CCCEEEEccccEEecC-CCeEEec-cCccHHHHHHHHHHHHHHhhcC--CCceEEEEEECCcccCh-hhHHHHhc--ccC
Confidence 111122 6899999 6999999999999999998764 56999999999999986 79998854 232
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccC
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEG 263 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~ 263 (444)
.|+++++|.+.. + . .+|. .|+.+.
T Consensus 232 -~d~~i~~d~~~~---~--~----~~g~---------------~~~~~~------------------------------- 255 (373)
T 1vhe_A 232 -PDIAFGVDVGIA---G--D----TPGI---------------SEKEAQ------------------------------- 255 (373)
T ss_dssp -CSEEEEEEEEEC---C--C----STTC---------------CTTTCC-------------------------------
T ss_pred -CCEEEEEecccc---C--C----CCCC---------------cccccc-------------------------------
Confidence 478888874221 0 0 1111 011000
Q ss_pred CceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCc
Q 013368 264 EVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPIL 343 (444)
Q Consensus 264 ~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (444)
+.-|. . | .+.+.. +.
T Consensus 256 ---------~~lg~------G----~-----------------------------------~i~~~~----------~~- 270 (373)
T 1vhe_A 256 ---------SKMGK------G----P-----------------------------------QIIVYD----------AS- 270 (373)
T ss_dssp ---------CCTTS------C----C-----------------------------------EEEEEE----------TT-
T ss_pred ---------cccCC------C----c-----------------------------------eEEEeC----------CC-
Confidence 00010 0 0 011111 01
Q ss_pred cccCCCChHHHHHHHHHHHhcCCCCCc-eeecCCcchHHH--HhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHH
Q 013368 344 TATDSSNPWWNLLEEAVRKANGKLGKP-EIFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDI 420 (444)
Q Consensus 344 ~~~~~~~~l~~~~~~a~~~~~~~~~~~-~~~~g~tD~~~~--~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~ 420 (444)
...++++++.+.+++++.+... .. ....|+||++++ +..|+|++.|||+.. .+|+++|+++++++..++++
T Consensus 271 --~~~~~~l~~~l~~~a~~~gi~~-~~~~~~~ggtDa~~~~~~~~GiPtv~lg~~~~---~~Hs~~E~v~~~dl~~~~~l 344 (373)
T 1vhe_A 271 --MVSHKGLRDAVVATAEEAGIPY-QFDAIAGGGTDSGAIHLTANGVPALSITIATR---YIHTHAAMLHRDDYENAVKL 344 (373)
T ss_dssp --EECCHHHHHHHHHHHHHHTCCC-EEEEETTCCCTHHHHTTSTTCCCEEEEEEEEB---STTSSCEEEEHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCCe-EEecCCCCCccHHHHHHhCCCCcEEEEccccc---cCCChhheecHHHHHHHHHH
Confidence 2446789999999999987655 33 345688999999 567999999999865 48999999999999999999
Q ss_pred HHHHHHHHHc
Q 013368 421 YESIIKAYAS 430 (444)
Q Consensus 421 ~~~~l~~l~~ 430 (444)
|..++..++.
T Consensus 345 l~~~l~~l~~ 354 (373)
T 1vhe_A 345 ITEVIKKLDR 354 (373)
T ss_dssp HHHHHHHCCH
T ss_pred HHHHHHHhcH
Confidence 9999998753
|
| >2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-27 Score=230.70 Aligned_cols=336 Identities=11% Similarity=0.070 Sum_probs=192.5
Q ss_pred HHHHHhhhcccCCCCCCChh-HHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCC
Q 013368 31 IERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W 109 (444)
+++|++|++|||+| ++|+ ++++||+++|+++|++++.. ...||+++++|. .|+|+|.|||||||.....
T Consensus 12 ~elL~~Lv~ipS~s--g~E~~~v~~~l~~~l~~~G~~v~~D----~~GNlia~~~g~---~p~lll~~H~Dtvp~~v~~- 81 (354)
T 2wzn_A 12 WKLMQEIIEAPGVS--GYEHLGIRDIVVDVLKEVADEVKVD----KLGNVIAHFKGS---SPRIMVAAHMDKIGVMVNH- 81 (354)
T ss_dssp HHHHHHHHHSCCBT--TCGGGTHHHHHHHHHHTTSSEEEEC----TTCCEEEEECCS---SSEEEEEEECCBCEEEEEE-
T ss_pred HHHHHHHhcCCCCC--cchHHHHHHHHHHHHHHcCCEEEEe----CCCeEEEEECCC---CceEEEEeccccCCCcCCe-
Confidence 68999999999996 6664 68999999999999988743 345999998653 4899999999999975321
Q ss_pred ccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEE
Q 013368 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGI 189 (444)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~ 189 (444)
.. ++|.++++|..++++..++.. ++..+...+ .....+.+++..+||.++ .|.+.+....... +.+.
T Consensus 82 -------~~-~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ee~~~-~~~~~~~~~~~~~--~~g~ 148 (354)
T 2wzn_A 82 -------ID-KDGYLHIVPIGGVLPETLVAQ-RIRFFTEKG-ERYGVVGVLPPHLRRGQE-DKGSKIDWDQIVV--DVGA 148 (354)
T ss_dssp -------EC-TTSCEEEEEESSCCGGGGTTC-EEEEEETTE-EEEEEECCCCGGGC----------CCGGGCCE--ECSC
T ss_pred -------ee-cCCceeeccCCCccHHHHHHH-HHHHhhccC-CccceEEEeeeeeEeccc-ccccchhhhhhhh--hhcc
Confidence 22 388899988777766554332 222222222 345677788888898775 5666554432211 1111
Q ss_pred EeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeee
Q 013368 190 VLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVN 269 (444)
Q Consensus 190 ~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~ 269 (444)
... .+.....+..+..+.....+++.+...|++.+. ++...+..++..+..+..... ........+..
T Consensus 149 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~ 216 (354)
T 2wzn_A 149 SSK----EEAEEMGFRVGTVGEFAPNFTRLNEHRFATPYL--DDRICLYAMIEAARQLGDHEA------DIYIVGSVQEE 216 (354)
T ss_dssp SSH----HHHHHTTCCTTCEEEECCCCEECSSSEEECTTH--HHHHHHHHHHHHHHHCCCCSS------EEEEEEESCGG
T ss_pred cch----hhhhccccccceeeeeeeeeEeecccccccccc--cccchhhhHHHHHHHHHhccc------cccccccceee
Confidence 111 111123455566677777778888888876543 455555555555554432110 00000011111
Q ss_pred eeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCC
Q 013368 270 MAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSS 349 (444)
Q Consensus 270 ~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 349 (444)
.+...++. ..|.++..+....+.+........ ............ ... . ....
T Consensus 217 ~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~-----------~---~~~~ 268 (354)
T 2wzn_A 217 VGLRGARV------ASYAINPEVGIAMDVTFAKQPHDK------GKIVPELGKGPV--MDV-----------G---PNIN 268 (354)
T ss_dssp GTSHHHHH------HHHHHCCSEEEEEEEEECCCTTST------TCCCCCTTSCCE--EEE-----------S---TTSC
T ss_pred eeeecccc------cccccccccceeeeeeeccccchh------hhhheeeccccc--ccc-----------c---cccC
Confidence 22222222 456667777777777665433210 000000111111 111 0 1111
Q ss_pred ChHHHHHHHHHHHhcCCC-CCceeecCCcchHHHH--hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHH
Q 013368 350 NPWWNLLEEAVRKANGKL-GKPEIFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIK 426 (444)
Q Consensus 350 ~~l~~~~~~a~~~~~~~~-~~~~~~~g~tD~~~~~--~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~ 426 (444)
.................. +.....+|+||++++. ..|+|++.|||+.. .+|+++|+++++++.+++++|..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~ggTDa~~~~~~~~Giptv~~G~g~~---~~Ht~~E~v~i~dl~~~~~ll~~~i~ 345 (354)
T 2wzn_A 269 PKLRAFADEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVATAVLSIPIR---YMHSQVELADARDVDNTIKLAKALLE 345 (354)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCSCCSSHHHHHHTSTTCCEEEEEEEEEB---STTSTTCEEEHHHHHHHHHHHHHHHH
T ss_pred cchhhhhHHHHHHhcCCCceEEEecccccHHHHHHHhcCCCCEEEECcccC---CCCcccEEEEHHHHHHHHHHHHHHHH
Confidence 222222222222222221 1233456899999875 56999999999965 48999999999999999999999999
Q ss_pred HHHccc
Q 013368 427 AYASYV 432 (444)
Q Consensus 427 ~l~~~~ 432 (444)
+|...+
T Consensus 346 ~L~~~d 351 (354)
T 2wzn_A 346 ELKPMD 351 (354)
T ss_dssp HCCCCC
T ss_pred hCcccc
Confidence 986544
|
| >2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-24 Score=206.81 Aligned_cols=249 Identities=16% Similarity=0.111 Sum_probs=172.5
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccccc--
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP-- 103 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp-- 103 (444)
+.++++++|++|++|||+| ++|.++++++.++|+++|++++.. ...|+++.++|.+ +.|+|+|.||+|||+
T Consensus 4 ~~~~~~~~l~~lv~i~s~s--~~e~~~~~~l~~~l~~~g~~~~~d----~~gnl~a~~~g~~-~~~~ill~~H~Dtv~~~ 76 (349)
T 2gre_A 4 HTKETMELIKELVSIPSPS--GNTAKIINFIENYVSEWNVETKRN----NKGALILTVKGKN-DAQHRLLTAHVDTLGAM 76 (349)
T ss_dssp HHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHTTTSSSEEEEC----SSSCEEEEECCSE-EEEEEEEEEECCBCEEE
T ss_pred cHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHhCCEEEEe----cCCcEEEEecCCC-CCceEEEEeccccccee
Confidence 4578999999999999986 678889999999999999987653 3459999987642 247899999999994
Q ss_pred --------------CCCCCCccCCCcce----------------------------------------------------
Q 013368 104 --------------SEPSKWSHHPFGAH---------------------------------------------------- 117 (444)
Q Consensus 104 --------------~~~~~W~~~Pf~~~---------------------------------------------------- 117 (444)
.+ +|..+||.+.
T Consensus 77 v~~i~~~G~l~~~~~G--g~~~~~~~~~~v~i~~~~g~~~~g~i~~~~~~~h~~~~~~~~~~~~~~l~~~id~g~~~~~~ 154 (349)
T 2gre_A 77 VKEIKPDGRLSLSMIG--GFRWNSVEGEYCEIETSSGKTYTGTILMHQTSVHVYKDAGEAKRDEKNIEVRIDERVFSADE 154 (349)
T ss_dssp EEEECTTSCEEEEEES--SCCGGGTTTCEEEEECTTSCEEEEEEECC-------------------CEEEESSCCCSHHH
T ss_pred EEEECCCCeEEEEecC--CCccccccCcEEEEEcCCCCEEEEEEeCCCCCccccchhccCCCCHHHceEEeccCCCCHHH
Confidence 33 4776665321
Q ss_pred --------------------ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHH
Q 013368 118 --------------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (444)
Q Consensus 118 --------------------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (444)
.. ++++||| +.|||++++++|+|++.|++.+.+++++|.++|+++||.|+ .|++.+
T Consensus 155 ~~~~gi~~gd~v~~~~~~~~~~-~~~i~gr-~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~G~-~g~~~~- 230 (349)
T 2gre_A 155 VRELGIEVGDFVSFDPRVQITE-SGYIKSR-HLDDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGY-GGNSNI- 230 (349)
T ss_dssp HHHTTCCTTCEEEECCCCEECT-TSEEEES-CCTTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-----CCCCCC-
T ss_pred HHHcCCCCCCEEEEccccEEcc-CCeEEEe-eccchHHHHHHHHHHHHHHhccCCCCceEEEEEECcccCCc-hhhccc-
Confidence 12 5899999 69999999999999999998877788999999999999985 788765
Q ss_pred hccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHh
Q 013368 178 DSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKA 257 (444)
Q Consensus 178 ~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~ 257 (444)
.. ..|+++++|.+.. .. |-+.++.
T Consensus 231 ---~~-~~~~~i~~D~~~~--~~-----------------------~p~~~~~--------------------------- 254 (349)
T 2gre_A 231 ---PE-ETVEYLAVDMGAL--GD-----------------------GQASDEY--------------------------- 254 (349)
T ss_dssp ---CT-TEEEEEEECCCCC--SC-----------------------C--CCTT---------------------------
T ss_pred ---cc-CCCEEEEEecccc--cC-----------------------CCCCCCC---------------------------
Confidence 12 2477888874321 00 0000000
Q ss_pred chhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeeccccccc
Q 013368 258 GLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDK 337 (444)
Q Consensus 258 ~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 337 (444)
+ .+ +.+..
T Consensus 255 -----g--~~----------------------------------------------------------i~~~~------- 262 (349)
T 2gre_A 255 -----T--VS----------------------------------------------------------ICAKD------- 262 (349)
T ss_dssp -----S--EE----------------------------------------------------------EEEEE-------
T ss_pred -----c--eE----------------------------------------------------------EEEcc-------
Confidence 0 00 00010
Q ss_pred CCCCCccccCCCChHHHHHHHHHHHhcCCCCCc-eeecCCcchHHHH--hcCCCeEEEccCCCCCCCCCCCCccccHHHH
Q 013368 338 FGRPILTATDSSNPWWNLLEEAVRKANGKLGKP-EIFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEY 414 (444)
Q Consensus 338 ~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~-~~~~g~tD~~~~~--~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l 414 (444)
.. ...+..+++.+.+++++.+... .. ...+|+||+..+. ..|+|++.+|++.. ..|+ .|+++.+++
T Consensus 263 -~~-----~~~~~~l~~~l~~~a~~~gi~~-q~~~~~ggGsDa~~~~~~~~GiPt~~lg~~~~---~~Hs-~E~~~~~dl 331 (349)
T 2gre_A 263 -SS-----GPYHYALRKHLVELAKTNHIEY-KVDIYPYYGSDASAAIRAGFDVKHALIGAGID---SSHA-FERTHESSI 331 (349)
T ss_dssp -TT-----EECCHHHHHHHHHHHHHHTCCE-EEEECSCC--------CCSSSCEEEEEEECCB---STTS-SEEEEHHHH
T ss_pred -CC-----CCCCHHHHHHHHHHHHHcCCCc-EEeccCCCCccHHHHHHhCCCCcEEEeccCcc---cccc-ceeccHHHH
Confidence 00 0124578888888888887654 22 2356889999884 57999998887765 4999 999999999
Q ss_pred HHHHHHHHHHHH
Q 013368 415 LKGIDIYESIIK 426 (444)
Q Consensus 415 ~~~~~~~~~~l~ 426 (444)
..+++++..++.
T Consensus 332 ~~~~~ll~~~l~ 343 (349)
T 2gre_A 332 AHTEALVYAYVM 343 (349)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
|
| >1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=202.66 Aligned_cols=253 Identities=16% Similarity=0.176 Sum_probs=182.4
Q ss_pred HHHHHHhhhcccCCCCCCCh-hHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccccc-----
Q 013368 30 IIERFRAYLQIDTSQPNPDY-TNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVP----- 103 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e-~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp----- 103 (444)
.+++|++|+++||+| ++| .+++++|+++|+++|++++.. ...|+++.++|. .|+|+|.||+|+|+
T Consensus 8 ~~~~l~~L~~~~s~s--g~e~~~~~~~l~~~l~~~g~~~~~d----~~gnlia~~~g~---~~~i~l~aH~D~v~~~v~~ 78 (353)
T 1y0y_A 8 DYELLKKVVEAPGVS--GYEFLGIRDVVIEEIKDYVDEVKVD----KLGNVIAHKKGE---GPKVMIAAHMDQIGLMVTH 78 (353)
T ss_dssp CHHHHHHHHHSCCBT--TCGGGTHHHHHHHHHGGGSSEEEEC----TTCCEEEEECCS---SCEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHhCCCCC--ccchHHHHHHHHHHHHhhCCeEEEc----CCCCEEEEecCC---CccEEEEeccCcccEEEEE
Confidence 578999999999986 778 899999999999999987642 456999998654 38999999999996
Q ss_pred -----------CCCCCCccCCCcc--------------------------------------------------------
Q 013368 104 -----------SEPSKWSHHPFGA-------------------------------------------------------- 116 (444)
Q Consensus 104 -----------~~~~~W~~~Pf~~-------------------------------------------------------- 116 (444)
.+ +|...|+.+
T Consensus 79 i~~~G~l~~~~~G--g~~~~~~~~~~v~v~~~~g~~~~g~i~~~~~h~~~~~~~~~~~~~~~l~~d~g~~~~~~~~~~gi 156 (353)
T 1y0y_A 79 IEKNGFLRVAPIG--GVDPKTLIAQRFKVWIDKGKFIYGVGASVPPHIQKPEDRKKAPDWDQIFIDIGAESKEEAEDMGV 156 (353)
T ss_dssp ECTTSCEEEEEES--SCCGGGTTTCEEEEEEETTEEEEEEEEC-------------CCCGGGCEEECSCSSHHHHHHTTC
T ss_pred ECCCceEEEEEeC--CcchhhccCCEEEEEeCCCcEEEEEEeCCCcccCchhhccCCCChHHeEEEeCCCCHHHHHHcCC
Confidence 33 233221100
Q ss_pred -------------eecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccc
Q 013368 117 -------------HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN 183 (444)
Q Consensus 117 -------------~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~ 183 (444)
... ++++||| ++|||++++++|++++.|++ +++++.++|+++||.|+ .|++.+... +.
T Consensus 157 ~~Gd~v~~~~~~~~~~-~~~i~gr-a~D~k~g~a~~l~a~~~l~~----~~~~i~~~~~~~EE~g~-~G~~~~~~~--~~ 227 (353)
T 1y0y_A 157 KIGTVITWDGRLERLG-KHRFVSI-AFDDRIAVYTILEVAKQLKD----AKADVYFVATVQEEVGL-RGARTSAFG--IE 227 (353)
T ss_dssp CTTCEEEECCCCEEET-TTEEEET-THHHHHHHHHHHHHHHHCCS----CSSEEEEEEESCCTTTS-HHHHHHHHH--HC
T ss_pred CCCCEEEeccCcEEec-CCeEEec-cCccHHHHHHHHHHHHHhhc----CCCeEEEEEECCcccch-hHHHHHhhc--cC
Confidence 112 5789999 89999999999999998754 57899999999999985 799988642 32
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCC-CCCCHHHHHHHHHHHHHhchhhhhHHHHhchhcc
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL-YDNSAMENLFKSIESVRRFRASQFDLVKAGLKAE 262 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p-~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~ 262 (444)
.|+++++|.... .. |-+.. +.+ .
T Consensus 228 -~~~~i~~d~~~~------~~-------------------~p~~~~~~g--------------~---------------- 251 (353)
T 1y0y_A 228 -PDYGFAIDVTIA------AD-------------------IPGTPEHKQ--------------V---------------- 251 (353)
T ss_dssp -CSEEEEEEEEEC------CC-------------------STTCCGGGC--------------C----------------
T ss_pred -CCEEEEEecccc------cC-------------------CCCCccccC--------------c----------------
Confidence 477888874211 00 10000 000 0
Q ss_pred CCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCC
Q 013368 263 GEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPI 342 (444)
Q Consensus 263 ~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (444)
+. +.+|. . +.+.. .
T Consensus 252 -----~~---lg~G~------~-----------------------------------------i~~~d-------~---- 265 (353)
T 1y0y_A 252 -----TH---LGKGT------A-----------------------------------------IKIMD-------R---- 265 (353)
T ss_dssp -----CC---TTSCE------E-----------------------------------------EEEEE-------T----
T ss_pred -----cc---cCCCc------E-----------------------------------------EEEeC-------C----
Confidence 00 00110 0 01111 0
Q ss_pred ccccCCCChHHHHHHHHHHHhcCCCCCc-eeecCCcchHHH--HhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHH
Q 013368 343 LTATDSSNPWWNLLEEAVRKANGKLGKP-EIFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGID 419 (444)
Q Consensus 343 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~-~~~~g~tD~~~~--~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~ 419 (444)
....++++++.+.+++++.+.+. .. ...+|+||++.+ +..|+|++.|||+.. ..|+++|+++++++..+++
T Consensus 266 --~~~~~~~l~~~l~~~a~~~gi~~-~~~~~~~ggsDa~~~~~~~~GiPtv~lg~~~~---~~Hs~~E~v~~~dl~~~~~ 339 (353)
T 1y0y_A 266 --SVICHPTIVRWLEELAKKHEIPY-QLEILLGGGTDAGAIHLTKAGVPTGALSVPAR---YIHSNTEVVDERDVDATVE 339 (353)
T ss_dssp --TEECCHHHHHHHHHHHHHTTCCE-EEEECSSCCCTHHHHTTSTTCCCEEEEEEEEB---SCSSSCEEEEHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCE-EEeecCCCCchHHHHHHhCCCCcEEEEccccc---ccCCHHHhcCHHHHHHHHH
Confidence 12346789999999999886544 22 235688999999 567999999999864 4999999999999999999
Q ss_pred HHHHHHHHHHc
Q 013368 420 IYESIIKAYAS 430 (444)
Q Consensus 420 ~~~~~l~~l~~ 430 (444)
+|..++..+..
T Consensus 340 ll~~~l~~l~~ 350 (353)
T 1y0y_A 340 LMTKALENIHE 350 (353)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHhhhh
Confidence 99999998753
|
| >1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=189.04 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=174.4
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC---
Q 013368 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS--- 104 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~--- 104 (444)
.+.+++|++|+++||+| ++|.+++++|+++|+++|++++. + ...|+++.++|.+ .|.|+|.||+|||+.
T Consensus 5 ~~~~~~l~~Lv~~~s~s--g~e~~~~~~l~~~l~~~g~~~~~-d---~~gnlia~~~g~~--~~~i~l~aH~DtV~~~v~ 76 (346)
T 1vho_A 5 METGKLLMELSNLDGPS--GYETNVVSYIKSVIEPFVDEAKT-T---RHGSLIGYKKGKG--IGKLAFFAHVDEIGFVVS 76 (346)
T ss_dssp CCHHHHHHHHHHSCCBT--TCCHHHHHHHHHHHGGGCSEEEE-C---TTSCEEEEECCSS--SCEEEEEEECCBCCEEEE
T ss_pred HHHHHHHHHHHcCCCCC--cchHHHHHHHHHHHHhhCCEEEE-e---cCCcEEEEEcCCC--CceEEEEecCcccceEeE
Confidence 35789999999999986 78889999999999999998764 2 4559999987652 488999999999952
Q ss_pred ----------CCCCCccCCCc--------------c--------------------------------------------
Q 013368 105 ----------EPSKWSHHPFG--------------A-------------------------------------------- 116 (444)
Q Consensus 105 ----------~~~~W~~~Pf~--------------~-------------------------------------------- 116 (444)
.-..|...++. +
T Consensus 77 ~i~~G~l~~~~~Gg~~~~~~~g~~~~~~~~~g~~~G~i~~~~~h~~~~~~~~~~~~~~~l~id~g~~~eei~~G~~~~~~ 156 (346)
T 1vho_A 77 KVEGQFARLEPVGGVDPKVVYASKVRIYTKNGIERGVIGMLAPHLQDSESRKKVPTYDEIFVDLSLCERGVRVGDIAVID 156 (346)
T ss_dssp EEETTEEEEEEC--------CCCEEEEEETTEEEEEETTCCCSCCCCHHHHHTSCCTTCCEEEGGGSSSCCCTTCEEEEC
T ss_pred EecCCeEEEEEeCCccCcccccCEEEEEcCCCcEEEEEcCCCcccCchhhcccCCChhHeEEEeccchhcCCCCCEEEEc
Confidence 11235432211 1
Q ss_pred ---eecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEecc
Q 013368 117 ---HLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDE 193 (444)
Q Consensus 117 ---~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~ 193 (444)
.+. +++++||+ .|||.++++++.+++.+++.+ ++.++.++++.+||.|+ .|+..... .+. .|+++++|.
T Consensus 157 ~~~~~~-g~~i~g~~-~D~r~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~-~Ga~~~~~--~i~-~~~~i~~D~ 228 (346)
T 1vho_A 157 QTAFET-NGKVVGKA-LDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGC-LGALTGAY--EIN-PDAAIVMDV 228 (346)
T ss_dssp CCCEEE-TTEEEETT-HHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSH-HHHHHTTC--CCC-CSEEEEEEE
T ss_pred cchhhh-cCeEEecc-CccHHHHHHHHHHHHHhhhcC--CCceEEEEEECCcccch-hhHHHHhc--ccC-CCEEEEeec
Confidence 111 36799995 799999999999999987654 56899999999999985 68876433 232 356666653
Q ss_pred CCCCcCCcceeeecccccEEEEEEEeecCCccCC-CCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeee
Q 013368 194 GLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK-LYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAF 272 (444)
Q Consensus 194 g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~-p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~ 272 (444)
. |++. |.. +.
T Consensus 229 ~-----------------------------~~~~~~~~-~~--------------------------------------- 239 (346)
T 1vho_A 229 T-----------------------------FASEPPFS-DH--------------------------------------- 239 (346)
T ss_dssp E-----------------------------CCCCTTSC-CC---------------------------------------
T ss_pred c-----------------------------cccCCCCC-cc---------------------------------------
Confidence 1 1110 000 00
Q ss_pred eccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChH
Q 013368 273 LKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPW 352 (444)
Q Consensus 273 i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 352 (444)
..-| .+.. +. . ....+.++
T Consensus 240 ~~~~---------------------------------------------~g~~--i~-------~-------~~~~~~~l 258 (346)
T 1vho_A 240 IELG---------------------------------------------KGPV--IG-------L-------GPVVDRNL 258 (346)
T ss_dssp CCTT---------------------------------------------SCCE--EE-------C-------STTSCHHH
T ss_pred cccC---------------------------------------------CCce--EE-------e-------CCcCCHHH
Confidence 0000 0111 11 1 12446789
Q ss_pred HHHHHHHHHHhcCCCCCceee-c-CCcchHHH--HhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 353 WNLLEEAVRKANGKLGKPEIF-P-ASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~~~~-~-g~tD~~~~--~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
++.+.+++++.+.+. ..... + |+||++++ +..|+|++.+||+.. .+|+++|+++++++.+++++|..++..+
T Consensus 259 ~~~~~~~a~~~gi~~-~~~~~~g~ggsDa~~~~~~~~gipt~~lg~~~~---~~Hs~~E~~~~~dl~~~~~ll~~~~~~~ 334 (346)
T 1vho_A 259 VQKIIEIAKKHNVSL-QEEAVGGRSGTETDFVQLVRNGVRTSLISIPLK---YMHTPVEMVDPRDVEELARLLSLVAVEL 334 (346)
T ss_dssp HHHHHHHHHHTTCCC-EEESSCCC----CTTHHHHHTTCEEEEEEEECB---STTSTTEEECHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCE-EEEeCCCCCCchHHHHHHhCCCCcEEEEehhhc---ccccHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 999999999987655 33334 4 88999999 457999999998875 4999999999999999999999999987
Q ss_pred Hccc
Q 013368 429 ASYV 432 (444)
Q Consensus 429 ~~~~ 432 (444)
+...
T Consensus 335 ~~~~ 338 (346)
T 1vho_A 335 EVEG 338 (346)
T ss_dssp C---
T ss_pred hhhc
Confidence 6533
|
| >3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=193.79 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=174.3
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEe--e-cCCCCeEEEEecCCCCCCCcEEEEeecc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE--F-AKNKPLILLKWPGSNPQLPSILLNSHTD 100 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~--~-~~~~~nl~~~~~g~~~~~~~i~l~~H~D 100 (444)
+...++.+++|++|+++||+| ++|.+++++|+++|+++|++++..+ . ..+..|+++.++| + |+|+|.||||
T Consensus 13 ~~~~~~~~~~l~~Lv~i~s~s--g~e~~v~~~l~~~l~~~g~~v~~d~~~~~~~~~gnlia~~~g---~-~~ill~aH~D 86 (321)
T 3cpx_A 13 ENLYFQGMQLLKELCSIHAPS--GNEEPLKDFILEYIRSNAGSWSYQPVIYADNDLQDCIVLVFG---N-PRTAVFAHMD 86 (321)
T ss_dssp CGGGCCHHHHHHHHHHSCCBT--TCCHHHHHHHHHHHHHHGGGSSSCCEEECSGGGTTCEEEEES---S-CSEEEEEECC
T ss_pred hhHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhhCCeEEEccccccccCCccEEEEecC---C-ceEEEEecCC
Confidence 344567899999999999986 7888999999999999999765432 0 1124699999865 3 7899999999
Q ss_pred ccc-----------CCC-CCCccCCCcc--------------------------------------eecCCCeEEecCcc
Q 013368 101 VVP-----------SEP-SKWSHHPFGA--------------------------------------HLDSQGNIFARGSQ 130 (444)
Q Consensus 101 tvp-----------~~~-~~W~~~Pf~~--------------------------------------~~~~~g~l~GrG~~ 130 (444)
||+ .++ ..|...++.. +.. +|+++|| +.
T Consensus 87 tV~~~v~~i~~~~~~Gg~~~~~~~~v~~~~~~g~~~gvi~~~ee~~~ida~~lv~~Gd~v~~~~~~~~~-~g~i~~~-~~ 164 (321)
T 3cpx_A 87 SIGFTVSYNNHLHPIGSPSAKEGYRLVGKDSNGDIEGVLKIVDEEWMLETDRLIDRGTEVTFKPDFREE-GDFILTP-YL 164 (321)
T ss_dssp BCEEEECSTTBEEEESSCCCCTTCEEEEEETTEEEEEEEECGGGSCEEECSSCCCTTCEEEECCCCEEE-TTEEECT-TH
T ss_pred cCCeEecccCCeEEcCChhhcccCEEEEEeCCCceeeeECCccHHHHHHHHhcCCCCCEEEeccCcEEE-cCEEEEc-CC
Confidence 994 322 1221111111 112 3788889 58
Q ss_pred cchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHh--ccccccCceEEEeccCCCCcCCcceeeecc
Q 013368 131 DMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFAD--SHVFNSLNVGIVLDEGLASTTEDYRAFYAE 208 (444)
Q Consensus 131 D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~--~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~ 208 (444)
|||+|+++++++++.+. . ++++|+.+||.|+ .|+..... ...+. .|+++++|.+.. ..
T Consensus 165 D~k~G~aa~l~al~~l~-------~-i~~~~t~~EEvG~-~Ga~~a~~~~~~~~~-~~~~i~~D~~~~---~~------- 224 (321)
T 3cpx_A 165 DDRLGVWTALELAKTLE-------H-GIIAFTCWEEHGG-GSVAYLARWIYETFH-VKQSLICDITWV---TE------- 224 (321)
T ss_dssp HHHHHHHHHHHHTTTCC-------S-EEEEEESSTTTTC-CSHHHHHHHHHHHHC-CCEEEECCCEEC---CS-------
T ss_pred cCHHHHHHHHHHHHHhc-------C-cEEEEECCccCch-hcchhhhhccccccC-CCEEEEEeCccc---cC-------
Confidence 99999999999988653 1 8999999999995 78875332 11232 477888874221 10
Q ss_pred cccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccc
Q 013368 209 RCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (444)
Q Consensus 209 ~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~i 288 (444)
.. .+..|
T Consensus 225 -------------------------------------~~------------------------~~~~G------------ 231 (321)
T 3cpx_A 225 -------------------------------------GV------------------------EAGKG------------ 231 (321)
T ss_dssp -------------------------------------SS------------------------CTTSC------------
T ss_pred -------------------------------------Cc------------------------ccCCC------------
Confidence 00 00011
Q ss_pred cCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCC
Q 013368 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLG 368 (444)
Q Consensus 289 p~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~ 368 (444)
..+++. . . ...+.++++.+++++++.+.+.
T Consensus 232 -----------------------------------~~i~~~--------~-~-----~~~~~~l~~~~~~~a~~~gi~~- 261 (321)
T 3cpx_A 232 -----------------------------------VAISMR--------D-R-----MIPRKKYVNRIIELARQTDIPF- 261 (321)
T ss_dssp -----------------------------------EEEEEE--------S-S-----SCCCHHHHHHHHHHHTTSSCCE-
T ss_pred -----------------------------------cEEEEC--------C-C-----CCCCHHHHHHHHHHHHHcCCCE-
Confidence 011111 0 0 1346678888888888777654
Q ss_pred Cce-eecCCcchHHH--HhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHH
Q 013368 369 KPE-IFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAY 428 (444)
Q Consensus 369 ~~~-~~~g~tD~~~~--~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l 428 (444)
... ..+|+||++.+ +..|+|++.+||+.. ..|+++|++.++++...++++..++..+
T Consensus 262 q~~~~~~GGsD~~~~~~s~~Gipt~~lG~~~~---~~Hs~~E~~~~~dl~~~~~ll~~~~~~l 321 (321)
T 3cpx_A 262 QLEVEGAGASDGRELQLSPYPWDWCFIGAPEK---DAHTPNECVHKKDIESMVGLYKYLMEKL 321 (321)
T ss_dssp EEEECSSCCCHHHHHHHSSSCCBCCBEECEEB---STTSTTCEEEHHHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCccHHHHHHhCCCCCEEEEchhhc---ccchhhhheeHHHHHHHHHHHHHHHHhC
Confidence 222 36789999999 567999999999876 4999999999999999999999998753
|
| >1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=182.24 Aligned_cols=254 Identities=16% Similarity=0.211 Sum_probs=180.0
Q ss_pred HHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccC-------
Q 013368 32 ERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPS------- 104 (444)
Q Consensus 32 ~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~------- 104 (444)
++|++|+++||+| ++|.+++++|+++|+++|++++. + ...|+++.++|. +.|+|+|.||+|||+.
T Consensus 7 ~~l~~Lv~~~s~s--g~e~~~~~~l~~~l~~~g~~v~~-d---~~gnlia~~~g~--~~~~vll~aH~DtV~~~v~~i~~ 78 (348)
T 1ylo_A 7 SLLKALSEADAIA--SSEQEVRQILLEEAARLQKEVRF-D---GLGSVLIRLNES--TGPKVMICAHMDEVGFMVRSISR 78 (348)
T ss_dssp HHHHHHHHSCCBT--TBCHHHHHHHHHHHHHTTCCEEE-C---TTCCEEEECCCC--SSCEEEEEEECCCCEEEEEEECT
T ss_pred HHHHHHHcCCCCC--CchHHHHHHHHHHHHhhCCEEEE-e---cCCCEEEEecCC--CCceEEEEEcCCccceEEEEECC
Confidence 7899999999986 78888999999999999998763 2 345999998765 3478999999999961
Q ss_pred -C-----C-CCCcc------------------------------------------------------------CCCcce
Q 013368 105 -E-----P-SKWSH------------------------------------------------------------HPFGAH 117 (444)
Q Consensus 105 -~-----~-~~W~~------------------------------------------------------------~Pf~~~ 117 (444)
+ + ..|.. ++|..
T Consensus 79 ~G~~~~~~~Gg~~~~~~~g~~v~~~~~~G~~~~h~~~~~~~~~~~~~l~id~G~~s~~~~~~~gi~~g~~i~~~~~~~~- 157 (348)
T 1ylo_A 79 EGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQV- 157 (348)
T ss_dssp TCCEEEEEESCCCGGGSSSEEEEEECTTCCEEEEEEEEEEETTEEEEEEEECSCCSHHHHHHTTCCTTCEEEECCCCEE-
T ss_pred CCeEEEEecCCcchhhccCCEEEEEeCCCCCCcchhhhhccCCChhHEEEEecCCCHHHHHHcCCCCCCEEEEccccEE-
Confidence 0 0 11211 11211
Q ss_pred ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCC
Q 013368 118 LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLAS 197 (444)
Q Consensus 118 ~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~ 197 (444)
.. +|+++|| +.|||.++++++.+++.+.+.+ ++.++.++++.+||.|+ .|+..... .+. .|+++++|....
T Consensus 158 ~~-~~~~~~~-~~D~k~g~aa~l~al~~l~~~~--~~~~~~~~~t~~EEvG~-~Ga~~~~~--~i~-~~~~i~~D~~~~- 228 (348)
T 1ylo_A 158 LP-HQRVMGK-AFDDRLSCYLLVTLLRELHDAE--LPAEVWLVASSSEEVGL-RGGQTATR--AVS-PDVAIVLDTACW- 228 (348)
T ss_dssp ET-TTEEEET-THHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEESCCTTSS-HHHHHHHH--HHC-CSEEEEECCCCC-
T ss_pred ec-CCEEEec-CcccHHHHHHHHHHHHHhhhcC--CCceEEEEEEcccccch-hHHHHhhc--ccC-CCEEEEEecccc-
Confidence 24 7899999 5899999999999999987543 56899999999999985 78876543 232 367777763210
Q ss_pred cCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCC
Q 013368 198 TTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGT 277 (444)
Q Consensus 198 p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~ 277 (444)
+ ..|.. +. .. . ..+..|
T Consensus 229 ----------------------~-----~~~~~-~~-----------~~--~---------------------~~~~~G- 245 (348)
T 1ylo_A 229 ----------------------A-----KNFDY-GA-----------AN--H---------------------RQIGNG- 245 (348)
T ss_dssp ----------------------S-----STTCC-ST-----------TC--C---------------------CCTTSC-
T ss_pred ----------------------C-----CCCCC-Cc-----------cc--c---------------------ccCCCC-
Confidence 0 01100 10 00 0 000001
Q ss_pred CCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHH
Q 013368 278 PSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLE 357 (444)
Q Consensus 278 ~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 357 (444)
..+++.. . ....+..+++.+.
T Consensus 246 ----------------------------------------------~~i~~~~--------~-----~~~~~~~l~~~~~ 266 (348)
T 1ylo_A 246 ----------------------------------------------PMLVLSD--------K-----SLIAPPKLTAWIE 266 (348)
T ss_dssp ----------------------------------------------CEEEEEC--------S-----SCBCCHHHHHHHH
T ss_pred ----------------------------------------------cEEEEeC--------C-----CCCCCHHHHHHHH
Confidence 1112221 0 1234678999999
Q ss_pred HHHHHhcCCCCCc-eeecCCcchHHHH--hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 358 EAVRKANGKLGKP-EIFPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 358 ~a~~~~~~~~~~~-~~~~g~tD~~~~~--~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
+++++.+.+. .. ...+|+||++++. ..|+|++.+||+.. .+|+++|+++++++..++++|..++..+.
T Consensus 267 ~~a~~~gi~~-~~~~~~~ggsDa~~~~~~~~gipt~~lg~~~~---~~Hs~~E~~~~~d~~~~~~ll~~~~~~l~ 337 (348)
T 1ylo_A 267 TVAAEIGVPL-QADMFSNGGTDGGAVHLTGTGVPTLVMGPATR---HGHCAASIADCRDILQMEQLLSALIQRLT 337 (348)
T ss_dssp HHHHHHTCCC-EEEECSSCCCHHHHHHTSTTCCCEEEEECCCB---SCSSSCEEEEHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCCe-EEeecCCCcchHHHHHHhcCCCCEEEECcccC---cCCCcceEeeHHHHHHHHHHHHHHHHHhh
Confidence 9999988765 32 3356899999995 46999999999875 49999999999999999999999998764
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=172.76 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=121.6
Q ss_pred CChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCC--Cc-eEEEeec---CCCCeEEEEecCCCCCCCcEEEEe
Q 013368 25 KSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALS--LE-SQTLEFA---KNKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~G--~~-~~~~~~~---~~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
.+.++++++|++|+++++.. .++++.++++||.++|+++| ++ ++..... .+.+||+++++|.++..+.|+|.|
T Consensus 17 ~~~~~~~~~l~~L~~i~sr~~~s~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~nvi~~~~g~~~~~~~v~l~a 96 (299)
T 1rtq_A 17 VDASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIGG 96 (299)
T ss_dssp CCHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHhCcCCCCCCCchHHHHHHHHHHHHHHhcCCcccceeeeeccCCCCCceEEEEEECCCCCCCEEEEEe
Confidence 45789999999999999753 34677899999999999986 43 3322211 124699999987642247899999
Q ss_pred ecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHH
Q 013368 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFA 177 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~ 177 (444)
|+||||. .|. ++.+||||+.|||+|++++|++++.|++.+.+++++|.|+++.+||.|. .|++.++
T Consensus 97 H~D~v~~---~~~----------~~~~~~~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~~~~ 162 (299)
T 1rtq_A 97 HLDSTIG---SHT----------NEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVGL-RGSQDLA 162 (299)
T ss_dssp ECCCCSS---TTC----------CTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHHHHH
T ss_pred ccccCCC---cCc----------CCCcccCCCcccHHHHHHHHHHHHHHHHcCCCCCceEEEEEECCccCCc-hhHHHHH
Confidence 9999983 353 5679999999999999999999999999887889999999999999985 7999998
Q ss_pred hccc--cccCceEEEecc
Q 013368 178 DSHV--FNSLNVGIVLDE 193 (444)
Q Consensus 178 ~~~~--~~~~d~~~~~~~ 193 (444)
++.. ..+++..+.+|.
T Consensus 163 ~~~~~~~~~~~~~i~~D~ 180 (299)
T 1rtq_A 163 NQYKSEGKNVVSALQLDM 180 (299)
T ss_dssp HHHHHTTCEEEEEEECSC
T ss_pred HhhhhccccEEEEEEecC
Confidence 7542 223455666663
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-19 Score=168.94 Aligned_cols=147 Identities=18% Similarity=0.321 Sum_probs=121.1
Q ss_pred CCChhHHHHHHHhhhcccCCCCC------CChhHHHHHHHHHHHHCCCceEEEeecC---CCCeEEEEecCCCCCCCcEE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPN------PDYTNASKFILAQAEALSLESQTLEFAK---NKPLILLKWPGSNPQLPSIL 94 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~------~~e~~~~~~l~~~l~~~G~~~~~~~~~~---~~~nl~~~~~g~~~~~~~i~ 94 (444)
+.+.++++++|++|++|+|+|+. .++.++++||+++|+++|++++.+.... ..+||++.++|.++ .+.|+
T Consensus 3 ~i~~~~~~~~l~~L~~i~s~s~~~r~~~~~~e~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~nvi~~~~g~~~-~~~i~ 81 (284)
T 1tkj_A 3 DIPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDP-NKVLM 81 (284)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEE-EEEEE
T ss_pred cCCHHHHHHHHHHHHcccccCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeccCCCCceeEEEEEeCCCC-CCEEE
Confidence 34678999999999999998731 1578999999999999999988765421 24699999987533 37899
Q ss_pred EEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
|.+|+|+||. |||+.|||+|++++|++++.|++.+.+++++|.|+|+++||.|. .|++
T Consensus 82 l~aH~D~v~~---------------------g~Ga~D~~~g~a~~l~~~~~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~ 139 (284)
T 1tkj_A 82 AGAHLDSVSS---------------------GAGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL-IGSK 139 (284)
T ss_dssp EEEECCCCTT---------------------SCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHH
T ss_pred EEeecCCCCC---------------------CCCCccChHHHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCC-cCHH
Confidence 9999999985 36899999999999999999999887889999999999999984 7999
Q ss_pred HHHhccc---cccCceEEEecc
Q 013368 175 KFADSHV---FNSLNVGIVLDE 193 (444)
Q Consensus 175 ~~~~~~~---~~~~d~~~~~~~ 193 (444)
.++++.. ..++++++++|.
T Consensus 140 ~~~~~~~~~~~~~~~~~i~~D~ 161 (284)
T 1tkj_A 140 FYVNNLPSADRSKLAGYLNFDM 161 (284)
T ss_dssp HHHHHSCHHHHTTEEEEEEECC
T ss_pred HHHhhCccchhhcEEEEEEecC
Confidence 9988632 234566777774
|
| >3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-17 Score=157.15 Aligned_cols=257 Identities=16% Similarity=0.154 Sum_probs=176.6
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC---
Q 013368 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE--- 105 (444)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~--- 105 (444)
+.+++|++|+++||+| +.|.+++++++++|+++|++++.. ...|+++.++|.+++.|+|+|.||||+|+.-
T Consensus 4 ~~~~~l~~L~~ips~S--G~E~~v~~~l~~~l~~~g~~~~~D----~~GNli~~~~g~~~~~~~v~l~aHmD~Vg~mV~~ 77 (355)
T 3kl9_A 4 TLFSKIKEVTELAAVS--GHEAPVRAYLREKLTPHVDEVVTD----GLGGIFGIKHSEAVDAPRVLVASHMDEVGFMVSE 77 (355)
T ss_dssp HHHHHHHHHHTSCCBT--TCCHHHHHHHHHHHGGGSSEEEEC----TTSCEEEEECCCSTTCCEEEEEEECCBCEEEEEE
T ss_pred HHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCEEEEC----CCCeEEEEECCcCCCCCeEEEEeccccccceEEE
Confidence 6789999999999986 889999999999999999987642 4559999998764235899999999999321
Q ss_pred ----------C-CCCccC--------------C-Ccce------------------------------------------
Q 013368 106 ----------P-SKWSHH--------------P-FGAH------------------------------------------ 117 (444)
Q Consensus 106 ----------~-~~W~~~--------------P-f~~~------------------------------------------ 117 (444)
+ .+|... + +.+.
T Consensus 78 I~~~G~l~~~~iGG~~~~~~~~~~v~i~t~~g~~~~Gvig~~~~H~~~~~~~~~~~~~~~~~iD~g~~s~ee~~~~GI~~ 157 (355)
T 3kl9_A 78 IKPDGTFRVVEIGGWNPMVVSSQRFKLLTRDGHEIPVISGSVPPHLTRGKGGPTMPAIADIVFDGGFADKAEAESFGIRP 157 (355)
T ss_dssp ECTTSCEEEEEESCCCTTTCSSCEEEEECTTSCEEEEEEC---------------CCGGGSCEECCCSSHHHHHHTTCCT
T ss_pred ECCCCEEEEEecCCccccccCCCEEEEEcCCCCEEEEEEeCccccccChhhccCCCChhhEEEEeccCCHHHHHHcCCCC
Confidence 0 122110 0 1000
Q ss_pred ------------ecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccC
Q 013368 118 ------------LDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSL 185 (444)
Q Consensus 118 ------------~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~ 185 (444)
..+++.+.|| +.|+|.++++++++++.+++. +++.+++++|+..||.|+ .|+...... +. .
T Consensus 158 Gd~v~~d~~~~~~~~~~~i~s~-~lDnr~g~~~~l~~l~~l~~~--~~~~~v~~~ft~qEEvG~-~Ga~~a~~~--~~-p 230 (355)
T 3kl9_A 158 GDTIVPDSSAILTANEKNIISK-AWDNRYGVLMVSELAEALSGQ--KLGNELYLGSNVQEEVGL-RGAHTSTTK--FD-P 230 (355)
T ss_dssp TCEEEECCCCEECTTSSEEEES-CHHHHHHHHHHHHHHHHHSSC--CCSSEEEEEEESCCTTTS-HHHHHHHHH--HC-C
T ss_pred CCEEEeccceEEecCCCEEEee-ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEECccccCc-chhHHHHhc--cC-C
Confidence 0013467776 599999999999999988654 468999999999999995 687665442 22 2
Q ss_pred ceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCc
Q 013368 186 NVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEV 265 (444)
Q Consensus 186 d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~ 265 (444)
|+++.+|.+..
T Consensus 231 d~~i~~D~~~a--------------------------------------------------------------------- 241 (355)
T 3kl9_A 231 EVFLAVDCSPA--------------------------------------------------------------------- 241 (355)
T ss_dssp SEEEEEEEEEC---------------------------------------------------------------------
T ss_pred CEEEEecCccC---------------------------------------------------------------------
Confidence 44444442110
Q ss_pred eeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccccccCCCCCccc
Q 013368 266 VSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTA 345 (444)
Q Consensus 266 ~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 345 (444)
++ . |+. .. ....+..+.+.. . .
T Consensus 242 ----------~d------~----p~~------------------------~~-~lg~G~~i~~~d--------~--~--- 263 (355)
T 3kl9_A 242 ----------GD------V----YGG------------------------QG-KIGDGTLIRFYD--------P--G--- 263 (355)
T ss_dssp ----------CG------G----GTS------------------------SC-CTTSCEEEEEEE--------T--T---
T ss_pred ----------CC------C----CCc------------------------cc-ccCCCcEEEEec--------C--C---
Confidence 00 0 110 00 011122222221 0 0
Q ss_pred cCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHh--cCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013368 346 TDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRE--RGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 423 (444)
Q Consensus 346 ~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~--~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~ 423 (444)
...+..+++.+.+++++.+.+... ...+|+||++.+.. .|+|++.+|++.. ..|++.|+++.+++..+++++..
T Consensus 264 ~~~~~~l~~~l~~~a~~~gIp~q~-~~~ggGtDa~~i~~a~~Gipt~~igvp~~---~~Hs~~E~~~~~Di~~~~~ll~~ 339 (355)
T 3kl9_A 264 HLLLPGMKDFLLTTAEEAGIKYQY-YCGKGGTDAGAAHLKNGGVPSTTIGVCAR---YIHSHQTLYAMDDFLEAQAFLQA 339 (355)
T ss_dssp EECCHHHHHHHHHHHHHTTCCEEE-EECSSCCTHHHHTTSTTCCCEEEEEEEEB---SCSSSCEEEEHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEE-ECCCcchHHHHHHHhCCCCCEEEEccCcC---CCCCcceEeeHHHHHHHHHHHHH
Confidence 233567888888888887765522 34458999998864 6999998887655 39999999999999999999999
Q ss_pred HHHHHH
Q 013368 424 IIKAYA 429 (444)
Q Consensus 424 ~l~~l~ 429 (444)
++..+.
T Consensus 340 ~l~~l~ 345 (355)
T 3kl9_A 340 LVKKLD 345 (355)
T ss_dssp HHHTCC
T ss_pred HHHHhC
Confidence 998763
|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=160.74 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=126.3
Q ss_pred CCChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCceEEEeecC----C----CCeEEEEecCCCCCCCcEE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFAK----N----KPLILLKWPGSNPQLPSIL 94 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~----~----~~nl~~~~~g~~~~~~~i~ 94 (444)
.-+.+++++.+++|+++.+.. .+.++.++++||.++|+++|++++.+.... + ..||+++++|.. .+.|+
T Consensus 21 ~~~~~~~~~~l~~l~~~~~R~~~s~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~--~~~il 98 (309)
T 3tc8_A 21 DFNADSAYAYVANQVAFGPRVPNTAAHKACGDYLASELKRFGAKVYQQEAILTAYDGTKLEARNIIGSFDPEN--SKRVL 98 (309)
T ss_dssp CCCHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEEE
T ss_pred ccCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeccccCCCcccceEEEEEECCCC--CceEE
Confidence 446789999999999887643 345788999999999999999987655321 1 369999998853 47899
Q ss_pred EEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc-----
Q 013368 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----- 169 (444)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----- 169 (444)
|.||+|+|+.++ .+||. .+ ++.+| +|+.|+++|++++|++++.|.+.+ ++++|.|+++.+||.|.
T Consensus 99 l~aH~Dsv~~~~----~~p~~--~~-~~~~~-~Ga~D~~sGva~~Le~ar~l~~~~--~~~~i~f~~~~~EE~Gl~~~~~ 168 (309)
T 3tc8_A 99 LFAHWDSRPYSD----HDPDP--SK-HRTPL-DGADDGGSGVGALLEIARQIGQKA--PGIGIDIIFFDAEDYGTPEFVT 168 (309)
T ss_dssp EEEECCCCSCCT----TCSSG--GG-TTSCC-CCTTTTHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCSCSCCTTCC
T ss_pred EEecccCCCCCC----CCccc--cC-CCccc-cCcccchHhHHHHHHHHHHHHhCC--CCCcEEEEEECccccccccccc
Confidence 999999999863 35775 44 78888 999999999999999999999875 78999999999999883
Q ss_pred -------cccHHHHHhcccc--ccCceEEEecc
Q 013368 170 -------HDGAEKFADSHVF--NSLNVGIVLDE 193 (444)
Q Consensus 170 -------~~G~~~~~~~~~~--~~~d~~~~~~~ 193 (444)
+.|+++++++... ..+...+.+|.
T Consensus 169 ~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlD~ 201 (309)
T 3tc8_A 169 DYTPDSWCLGTQFWAKNPHVPNYTAEYGILLDM 201 (309)
T ss_dssp SCCTTCSCHHHHHHHHSCSSTTCCCSEEEEEES
T ss_pred cccccccchhHHHHHhCCCccccceEEEEEecc
Confidence 2799999986432 23445666664
|
| >3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=158.72 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=110.9
Q ss_pred CCChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCceEEEeec----CC----CCeEEEEecCCCCCCCcEE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLESQTLEFA----KN----KPLILLKWPGSNPQLPSIL 94 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~----~~nl~~~~~g~~~~~~~i~ 94 (444)
.-+.+++++.|++|+++++.. .+.++.++++||.++|+++|++++.+... .+ ..||+++++|.. .+.|+
T Consensus 23 ~~~~~~~~~~l~~L~~~~~R~~gs~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~~g~~~~~~Nvia~~~g~~--~~~il 100 (314)
T 3gux_A 23 EFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPES--KKRIL 100 (314)
T ss_dssp CCCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEEE
T ss_pred CCCHHHHHHHHHHHHccCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeeccccCCCcccceEEEEEECCCC--CceEE
Confidence 346799999999999998754 34578899999999999999998765532 11 369999998753 47899
Q ss_pred EEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc-----
Q 013368 95 LNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG----- 169 (444)
Q Consensus 95 l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~----- 169 (444)
|.||+|+|+.++ .+|+. .. ++ .+++|+.|+++|++++|++++.|.+.+ ++++|.|+++.+||.|.
T Consensus 101 l~aH~Dsv~~~~----~~p~~--~~-~~-~~~~GA~D~~sGva~~Le~ar~l~~~~--~~~~i~fv~~~~EE~Gl~~~~~ 170 (314)
T 3gux_A 101 LCAHWDSRPYAD----NDPDP--KN-HH-TPILGVNDGASGVGVLLEIARQIQKEQ--PALGIDIVFFDSEDYGIPEFYD 170 (314)
T ss_dssp EEEECCCCC----------------------------CHHHHHHHHHHHHHHHHSC--CSSEEEEEEECSCCC-------
T ss_pred EEccccCCCcCC----CCccc--cc-CC-cccCCCcccHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccccccc
Confidence 999999999863 34553 22 44 456999999999999999999999875 78999999999999884
Q ss_pred --------cccHHHHHhcccc--ccCceEEEecc
Q 013368 170 --------HDGAEKFADSHVF--NSLNVGIVLDE 193 (444)
Q Consensus 170 --------~~G~~~~~~~~~~--~~~d~~~~~~~ 193 (444)
+.|+++++++... ..+.+.+.+|.
T Consensus 171 ~~~~~ds~~~GS~~~~~~~~~~~~~~~~~inlDm 204 (314)
T 3gux_A 171 GKYKQDTWCLGSQYWARTPHVQNYNARYGILLDM 204 (314)
T ss_dssp ----CTTSCHHHHHHHHSCSSTTCCCSEEEEEES
T ss_pred ccccccccchhHHHHHhCCcccccceeEEEEEec
Confidence 1799999986432 23455666664
|
| >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=152.39 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=108.5
Q ss_pred ChhHH-HHHHHhhhcccCCCCCCChhHHHHHHHHHHHH--CCCceEEEeecC-------CCCeEEEEecCCCCCCCcEEE
Q 013368 26 SDDSI-IERFRAYLQIDTSQPNPDYTNASKFILAQAEA--LSLESQTLEFAK-------NKPLILLKWPGSNPQLPSILL 95 (444)
Q Consensus 26 ~~~~~-~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~--~G~~~~~~~~~~-------~~~nl~~~~~g~~~~~~~i~l 95 (444)
+.+++ .++|++|+..+... +.++.++++||.++|++ +|++++.+.... ...||+++++|. ..+.|+|
T Consensus 29 ~~~~~~~~~l~~L~~~r~~~-s~~~~~~~~~l~~~l~~~~~G~~v~~~~~~~~~~~g~~~~~Nvi~~~~g~--~~~~i~l 105 (329)
T 2afw_A 29 SISEMWQNDLQPLLIERYPG-SPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPT--AKRHLVL 105 (329)
T ss_dssp CHHHHHHHTTGGGCSCCCTT-SHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESSTT--SSEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHhhCCCCEEEEEEEEecCCCCCceEeEEEEEECCC--CCcEEEE
Confidence 56888 89999997555543 34566899999999999 999887655321 146999999875 3478999
Q ss_pred EeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc--------CCCCcceEEEEeecCccc
Q 013368 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS--------GFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~--------~~~~~~~i~~~~~~~EE~ 167 (444)
.||+|+||.+ .| ++.+ |+|+.|+++|+|++|++++.|.+. +.+++++|.|+++.+||.
T Consensus 106 ~aH~Dsv~~~--~~-----------~~~~-~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~~g~~~~~~i~~~~~~~EE~ 171 (329)
T 2afw_A 106 ACHYDSKYFS--HW-----------NNRV-FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEA 171 (329)
T ss_dssp EEECCCCCCC--CB-----------TTBC-CCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSC
T ss_pred EEeccCCCcC--cc-----------cCcC-CCCcccchhhHHHHHHHHHHHHHHHhhhcccccCCCCccEEEEEecCccc
Confidence 9999999975 34 3454 899999999999999999999875 346789999999999997
Q ss_pred -------CccccHHHHHhc
Q 013368 168 -------GGHDGAEKFADS 179 (444)
Q Consensus 168 -------g~~~G~~~~~~~ 179 (444)
+++.|++.++++
T Consensus 172 ~~~~~~~~gl~Gs~~~~~~ 190 (329)
T 2afw_A 172 FLHWSPQDSLYGSRHLAAK 190 (329)
T ss_dssp SSSCCSSSSCHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHHH
Confidence 135799999875
|
| >4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=132.16 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=116.6
Q ss_pred CChhHHHHHHHhhhcccC-CCCCCChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCcEEE
Q 013368 25 KSDDSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILL 95 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s-~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~i~l 95 (444)
=+.++..+.+++++++.. +..+.+..++++||.+.|+++|++++.+.... ...||+++++|.. .+.|+|
T Consensus 22 f~~~~a~~~l~~l~~fgpR~~gS~~~~~a~~~i~~~l~~~g~~v~~q~~~~~~~~~~~~~~~Nii~~~~g~~--~~~i~l 99 (309)
T 4fuu_A 22 FDADSAYLYVKNQVDFGPRVPNTKEHVACGNYLAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYKPES--KKRIAL 99 (309)
T ss_dssp CCHHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTSCEEEEEEEEEEESTTC--SSEEEE
T ss_pred cCHHHHHHHHHHHhCcCCcCCCCHHHHHHHHHHHHHHHHcCCeeEEEeEEeccCCCCcceeEEEEEEECCCC--CceEEE
Confidence 467999999999999855 33455678899999999999999987654321 1249999998864 378999
Q ss_pred EeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCc------
Q 013368 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGG------ 169 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~------ 169 (444)
.+|+|++|..+.... .. .+.....|+.|+.+|+|++|++++.|.+. +++.+|.|+|..+||.|.
T Consensus 100 ~aH~Ds~~~~~~~~~-------~~-~~~~~~~GA~D~aSG~a~lLE~ar~l~~~--~~~~~i~~~~~~~EE~Gl~~~~~~ 169 (309)
T 4fuu_A 100 FAHWDTRPWADNDAD-------EK-NHHTPILGANDGASGVGALLEIARLVNQQ--QPELGIDIIFLDAEDYGTPQFYEG 169 (309)
T ss_dssp EEECCCCSCCTTCSS-------GG-GTTSCCCCTTTTHHHHHHHHHHHHHHHHS--CCSSEEEEEEECSSSCCCCTTCCS
T ss_pred EeecCCCCCCCCccc-------cc-cccCCcCCcccCchhHHHHHHHHHHHhhc--CCCCceEEEeecccccCccccccc
Confidence 999999998642100 11 22233459999999999999999999886 468999999999999872
Q ss_pred -------cccHHHHHhcccc--ccCceEEEec
Q 013368 170 -------HDGAEKFADSHVF--NSLNVGIVLD 192 (444)
Q Consensus 170 -------~~G~~~~~~~~~~--~~~d~~~~~~ 192 (444)
+.|++++++.... ..+...+.+|
T Consensus 170 ~~~~~~~l~GS~~~~~~~~~~~~~i~~~inlD 201 (309)
T 4fuu_A 170 KHKEEAWCLGSQYWSRNPHVQGYNARFGILLD 201 (309)
T ss_dssp CCCGGGSCHHHHHHHHSCSSTTCCCSEEEEEC
T ss_pred hhhhhhhhcchhHHHhcccccCcceEEEEeee
Confidence 2588888876432 2334455555
|
| >3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-14 Score=134.54 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=104.7
Q ss_pred ChhHHHH-HHHhhhcccCCCCCCChhHHHHHHHHHHHHC--CCceEEEeecC-------CCCeEEEEecCCCCCCCcEEE
Q 013368 26 SDDSIIE-RFRAYLQIDTSQPNPDYTNASKFILAQAEAL--SLESQTLEFAK-------NKPLILLKWPGSNPQLPSILL 95 (444)
Q Consensus 26 ~~~~~~~-~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~--G~~~~~~~~~~-------~~~nl~~~~~g~~~~~~~i~l 95 (444)
+.++..+ .|+.+ -++-...+.++.++++||.++|+++ |++++.+.... ...||+++++|.. .+.|++
T Consensus 37 ~~~~~~~~~L~~~-~~~R~~gS~~~~~a~~~l~~~l~~~~~g~~v~~d~f~~~~~~g~~~~~Nvia~~~g~~--~~~ivl 113 (330)
T 3pb6_X 37 DPQRLWSTYLRPL-LVVRTPGSPGNLQVRKFLEATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRA--ARHLTL 113 (330)
T ss_dssp CHHHHHHHTTGGG-CSCCCTTSHHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEETTEEEEEEEEEEESCTTS--SEEEEE
T ss_pred CHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEeeecccccCCccceEEEEEECCCC--CceEEE
Confidence 5566666 56666 3444444567889999999999999 88887654321 1259999998763 378999
Q ss_pred EeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc-----CCCCcceEEEEeecCccc---
Q 013368 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-----GFQPVRSVYLSFVPDEEI--- 167 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~-----~~~~~~~i~~~~~~~EE~--- 167 (444)
.+|+|+|+... ++ ....|+.|+.+|++++|++++.|.+. +.+++.+|.|++..+||.
T Consensus 114 ~aH~Dsv~~~~--------------g~-~~~~GA~D~asGva~lLe~ar~l~~~~~~~~~~~~~~~i~fv~~~~EE~f~~ 178 (330)
T 3pb6_X 114 ACHYDSKLFPP--------------GS-TPFVGATDSAVPCALLLELAQALDLELSRAKKQAAPVTLQLLFLDGEEALKE 178 (330)
T ss_dssp EEECCCCCCCT--------------TS-CCCCCTTTTHHHHHHHHHHHHHTHHHHHHHHHTTCSEEEEEEEESCCSCSSC
T ss_pred EeccCCCCCCC--------------CC-cCcCCCcCChHHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEEcCcccccc
Confidence 99999998631 21 24569999999999999999999873 246889999999999998
Q ss_pred -----CccccHHHHHhc
Q 013368 168 -----GGHDGAEKFADS 179 (444)
Q Consensus 168 -----g~~~G~~~~~~~ 179 (444)
| +.|+++++++
T Consensus 179 w~~~~g-l~GS~~~a~~ 194 (330)
T 3pb6_X 179 WGPKDS-LYGSRHLAQL 194 (330)
T ss_dssp CSTTSS-CHHHHHHHHH
T ss_pred cCCCCC-CccHHHHHHH
Confidence 6 6899999874
|
| >3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.4e-13 Score=128.04 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=96.6
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC----
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE---- 105 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~---- 105 (444)
..++|++|+++|++| +.|.+++++++++|+++|.+++. + ...|+++.+ |. +.|+|+|.||||+|..-
T Consensus 13 ~~~~l~~L~~~pspS--G~E~~v~~~i~~~l~~~~~e~~~-D---~~Gnvi~~~-g~--~~~~v~l~aHmDevG~mV~~I 83 (343)
T 3isx_A 13 MKELIRKLTEAFGPS--GREEEVRSIILEELEGHIDGHRI-D---GLGNLIVWK-GS--GEKKVILDAHIDEIGVVVTNV 83 (343)
T ss_dssp CHHHHHHHHHSCCBT--TCCHHHHHHHHHHHTTTCSEEEE-C---TTCCEEEEE-CC--CSSEEEEEEECCBCEEEEEEE
T ss_pred HHHHHHHHHhCCCCC--CchHHHHHHHHHHHHHhCCEEEE-C---CCCCEEEEE-CC--CCCEEEEEecccccceEEEEE
Confidence 467899999999986 89999999999999999987764 3 345999987 43 45899999999999320
Q ss_pred ---------C-CCCcc-----CC------Ccce------------------------ec---------------------
Q 013368 106 ---------P-SKWSH-----HP------FGAH------------------------LD--------------------- 119 (444)
Q Consensus 106 ---------~-~~W~~-----~P------f~~~------------------------~~--------------------- 119 (444)
+ .+|.. .. +.+. ++
T Consensus 84 ~~~G~l~~~~vGG~~~~~~~~~~v~i~t~~~Gvig~~~~H~~~~~~~~~~~~~~~l~iD~g~~s~ee~~~~I~vGd~v~~ 163 (343)
T 3isx_A 84 DDKGFLTIEPVGGVSPYMLLGKRIRFENGTIGVVGMEGETTEERQENVRKLSFDKLFIDIGANSREEAQKMCPIGSFGVY 163 (343)
T ss_dssp CTTSCEEEEEESSCCHHHHTTCEEEETTSCEEEEEECCCSHHHHHHHHHTCCGGGEEEECSCSSHHHHHHHSCTTCEEEE
T ss_pred CCCCeEEEEecCCcCccccCCcEEEEeccEEEEEecccccccChhhcccCCCcceEEEEeCCCCHHHHHhcCCCCCEEEe
Confidence 0 12310 00 1110 00
Q ss_pred ------CCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHH
Q 013368 120 ------SQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (444)
Q Consensus 120 ------~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (444)
-++.+.||+ .|++.++++++++++.+. .+.+++++|+..||.|+ .|+...
T Consensus 164 ~~~~~~~~~~i~s~~-lDdR~g~~~~l~~l~~l~-----~~~~~~~~ft~qEEVG~-~Ga~~a 219 (343)
T 3isx_A 164 DSGFVEVSGKYVSKA-MDDRIGCAVIVEVFKRIK-----PAVTLYGVFSVQEEVGL-VGASVA 219 (343)
T ss_dssp SCCCEEETTEEEESC-HHHHHHHHHHHHHHHHCC-----CSSEEEEEEECCCCTTS-CCSTTT
T ss_pred cCceEEeccEEEecc-CccHHHHHHHHHHHHhcc-----CCCeEEEEEECCcccCc-hhHHHH
Confidence 035566665 899999999999988763 26899999999999996 677653
|
| >1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=105.77 Aligned_cols=81 Identities=48% Similarity=0.946 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Q 013368 350 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYA 429 (444)
Q Consensus 350 ~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~ 429 (444)
+++++.++++++++ +..+.+..++|+||+++|...|+|++.|||+..+...+|++||+++++++.+++++|..++.+++
T Consensus 1 ~~~v~~l~~a~~~~-g~~~~~~~~~g~TDar~~~~~gip~v~fGPg~~~~~~~H~~dE~v~i~~l~~~~~iy~~~i~~~~ 79 (88)
T 1q7l_B 1 NPWWAAFSRVCKDM-NLTLEPEIMPAAGDNRYIRAVGVPALGFSPMNRTPVLLHDHDERLHEAVFLRGVDIYTRLLPALA 79 (88)
T ss_dssp CHHHHHHHHHHHHT-TCCEEEEECCSCSHHHHHHHTTCCEEEECCCCSCCCCTTSTTCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHc-CCeeEeeeeceeCcHHHHHHcCCCEEEECCCCCCcccccCCCCeeEHHHHHHHHHHHHHHHHHHH
Confidence 47899999999998 44446777889999999999999999999997533479999999999999999999999999998
Q ss_pred cc
Q 013368 430 SY 431 (444)
Q Consensus 430 ~~ 431 (444)
+.
T Consensus 80 ~~ 81 (88)
T 1q7l_B 80 SV 81 (88)
T ss_dssp TC
T ss_pred cC
Confidence 76
|
| >4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-13 Score=129.52 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=104.6
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCcEEEEe
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
+....-+.|..++ +|-+.++.+..++++||.++|+++|++++.+.... ...||+++++|.. .+.|+|.|
T Consensus 9 ~~~~~~~~l~~il-~PR~~gs~~~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~~~~--~~~vvl~a 85 (312)
T 4f9u_A 9 DEVHFNRTLDSIL-VPRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTINPQA--QNFLALAC 85 (312)
T ss_dssp CHHHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEESTTS--SEEEEEEE
T ss_pred HHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEECCCC--CceEEEEE
Confidence 3334444555554 67766667788999999999999999988765321 1249999998863 36899999
Q ss_pred ecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc-----CCCCcceEEEEeecCcccC----
Q 013368 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS-----GFQPVRSVYLSFVPDEEIG---- 168 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~-----~~~~~~~i~~~~~~~EE~g---- 168 (444)
|+|+++.... .+ ..||.|+.+|+|++|+++|.|.+. +.+++++|.|++..+||.|
T Consensus 86 HyDs~~~~~~-------------~~---~~GA~DnaSGvA~lLElAR~l~~~~~~~~~~~p~~tI~fv~fdaEE~G~~~~ 149 (312)
T 4f9u_A 86 HYDSKYFPND-------------PG---FVGATDSAVPCAILLNTAKTLGAYLQKEFRNRSDVGLMLIFFDGEEAFKEWT 149 (312)
T ss_dssp ECCCCCCTTC-------------TT---CCCTTTTHHHHHHHHHHHHHTHHHHTTGGGSCSSEEEEEEEESCCSCSSSCS
T ss_pred EEecCCCCCC-------------CC---CCCccCCcccHHHHHHHHHHHHHHHHhhccCCCCceEEEEEecCccccccCC
Confidence 9999876421 11 249999999999999999999763 3468899999999999976
Q ss_pred ---ccccHHHHHhcc
Q 013368 169 ---GHDGAEKFADSH 180 (444)
Q Consensus 169 ---~~~G~~~~~~~~ 180 (444)
++.|+++++++.
T Consensus 150 ~~~~L~GS~~~a~~~ 164 (312)
T 4f9u_A 150 DADSVYGSKHLAAKL 164 (312)
T ss_dssp SSSSCHHHHHHHHHH
T ss_pred ccccccChHHHHHHH
Confidence 257999999864
|
| >4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=128.90 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=112.0
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC--------CCCeEEEEecCCCCCCCcEEEEe
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK--------NKPLILLKWPGSNPQLPSILLNS 97 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~--------~~~nl~~~~~g~~~~~~~i~l~~ 97 (444)
+...+-+.+..+. +|-+.++.+..++++||.+.|+++|++++.+.... ...||+++++|.. ...|+|.|
T Consensus 36 ~~~~~~~~l~~il-~pR~~Gs~~~~~~~~~i~~~l~~~g~~v~~q~f~~~~~~~~~~~~~Nii~~~~~~~--~~~i~l~a 112 (330)
T 4fai_A 36 DKLHLREAIDKIL-IPRVVGTTNHSIVREYIVQSLRDLDWDVEVNSFHDHAPIKGKLHFHNIIATLNPNA--ERYLVLSC 112 (330)
T ss_dssp CHHHHHHHHHHHC-SCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEESCTTC--SEEEEEEE
T ss_pred HHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEeeeeeecCCCCceeEEEEEEEECCCC--CcEEEEEE
Confidence 4455556666654 67766677888999999999999999988765431 1249999998753 36899999
Q ss_pred ecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc---CCCCcceEEEEeecCcccCc-----
Q 013368 98 HTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS---GFQPVRSVYLSFVPDEEIGG----- 169 (444)
Q Consensus 98 H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~---~~~~~~~i~~~~~~~EE~g~----- 169 (444)
|+|+++..+ .+ ..||.|+.+|+|++|++++.|.+. +.+++.+|.|++..+||.|-
T Consensus 113 HyDs~~~~~--------------~~---~~GA~DnasG~A~lLE~Ar~l~~~~~~~~~p~rtI~fv~fdgEE~Gl~~~~~ 175 (330)
T 4fai_A 113 HYDSKYMPG--------------VE---FLGATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPK 175 (330)
T ss_dssp ECCCCCCTT--------------SC---CCCTTTTHHHHHHHHHHHHHTHHHHGGGGTSSEEEEEEEESCCSCSSSCBTT
T ss_pred eeccccccc--------------CC---CCCCCCccHhHHHHHHHHHHHHHhhhccCCCCccEEEEEecccccccccccc
Confidence 999988642 12 249999999999999999999763 44688999999999999872
Q ss_pred --cccHHHHHhcc----ccccCceEEEecc
Q 013368 170 --HDGAEKFADSH----VFNSLNVGIVLDE 193 (444)
Q Consensus 170 --~~G~~~~~~~~----~~~~~d~~~~~~~ 193 (444)
+.|+++++++. ....+...+.+|.
T Consensus 176 ~~llGS~~~a~~~~~~~~~~~i~~~inlDm 205 (330)
T 4fai_A 176 DSIYGARHLAKKWHHEGKLDRIDMLVLLDL 205 (330)
T ss_dssp BSCHHHHHHHHHHHHTTCSTTEEEEEEECS
T ss_pred chhhhhHHHHhcchhccchhceeEEEEecc
Confidence 36999999853 2334455667764
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=115.46 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHCC--CceEEE-e---e-cCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCe
Q 013368 51 NASKFILAQAEALS--LESQTL-E---F-AKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGN 123 (444)
Q Consensus 51 ~~~~~l~~~l~~~G--~~~~~~-~---~-~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~ 123 (444)
+.++.|.+.|+. | ++++.. + . .....||++.++|..+..+.|+|.+|+|+++.+
T Consensus 204 ~da~~L~~~l~~-g~~~~v~l~~~~~~~~~~~~~Nvi~~~~g~~~~~~~i~~~aH~Ds~~~g------------------ 264 (444)
T 3iib_A 204 PDADLINAMLKR-DKEVVISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEG------------------ 264 (444)
T ss_dssp HHHHHHHHHHTT-TCCCEEEEEEEEEEEEEEEEEEEEEEECCSTEEEEEEEEEEECCCCSSS------------------
T ss_pred HHHHHHHHHHhC-CCCeEEEEEEeeeEcCCceeEEEEEEEeCCCCCCCEEEEEeecccCCCC------------------
Confidence 456667666654 3 222210 0 0 113469999999875334789999999998853
Q ss_pred EEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 124 IFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 124 l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
+|+.|+++|++++|++++.|.+.+.+++++|.|+++.+||.| +.|+++++++.
T Consensus 265 ---~Ga~D~~sG~a~~le~a~~l~~~~~~~~~~i~f~~~~~EE~g-l~Gs~~~~~~~ 317 (444)
T 3iib_A 265 ---TGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELG-LLGGKTYAKEH 317 (444)
T ss_dssp ---CCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGT-SHHHHHHHHHT
T ss_pred ---CCCccchHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCcccC-CcCHHHHHHhh
Confidence 489999999999999999999988788999999999999998 48999999864
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=108.92 Aligned_cols=94 Identities=20% Similarity=0.130 Sum_probs=75.9
Q ss_pred CCeEEEEecCCCC---CCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCC
Q 013368 76 KPLILLKWPGSNP---QLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQ 152 (444)
Q Consensus 76 ~~nl~~~~~g~~~---~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~ 152 (444)
..||++.++|..+ ..+.|++.+|+|+|+.+ +|+.|+++|++++|++++.|.+. +
T Consensus 203 ~~Nvi~~~~g~~~~~~~~~~v~~~aH~D~v~~g---------------------~Ga~D~~~G~a~~le~~~~l~~~--~ 259 (421)
T 2ek8_A 203 SHNVIATKKPDANKKNTNDIIIIGSHHDSVEKA---------------------PGANDDASGVAVTLELARVMSKL--K 259 (421)
T ss_dssp EEEEEEEECCCSSTTCCCCEEEEEEECCCCTTC---------------------CCTTTTHHHHHHHHHHHHHHTTS--C
T ss_pred ccceEEEecCcccCCCCCCEEEEecccccCCCC---------------------CCCCCCcHhHHHHHHHHHHHhcc--C
Confidence 4699999988532 35789999999999853 59999999999999999999874 4
Q ss_pred CcceEEEEeecCcccCccccHHHHHhccc---cccCceEEEecc
Q 013368 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHV---FNSLNVGIVLDE 193 (444)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~---~~~~d~~~~~~~ 193 (444)
++++|.|+++.+||.| +.|++.++++.. .+++...+.+|.
T Consensus 260 ~~~~i~~~~~~~EE~g-~~Gs~~~~~~~~~~~~~~~~~~in~D~ 302 (421)
T 2ek8_A 260 TDTELRFITFGAEENG-LIGSKKYAASLSEDEIKRTIGMFQLDM 302 (421)
T ss_dssp CSSEEEEEEESSSTTT-SHHHHHHHTTCCHHHHHHEEEEEEECS
T ss_pred CCceEEEEEECCcccc-chhHHHHHHhCccchhhcEEEEEEecc
Confidence 6799999999999998 589999998632 223445667764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=98.61 E-value=4.6e-08 Score=102.58 Aligned_cols=94 Identities=21% Similarity=0.195 Sum_probs=74.9
Q ss_pred CCeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHH---cCCC
Q 013368 76 KPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKA---SGFQ 152 (444)
Q Consensus 76 ~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~---~~~~ 152 (444)
..||+++++|..+..+.|++.+|+|+++. |+.|+.+|++++|++++.|.+ .+++
T Consensus 312 ~~NVi~~i~G~~~~~~~vllgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~g~~ 368 (707)
T 3fed_A 312 IYNVVGTIRGSVEPDRYVILGGHRDSWVF-----------------------GAIDPTSGVAVLQEIARSFGKLMSKGWR 368 (707)
T ss_dssp EEEEEEEECCSSEEEEEEEEEEECCCSSS-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEEEeCCCCCCceEEEeccccCCCC-----------------------CCccCcHHHHHHHHHHHHHHhhhhccCC
Confidence 45999999987533478999999999763 568999999999999999976 4678
Q ss_pred CcceEEEEeecCcccCccccHHHHHhccc---cccCceEEEecc
Q 013368 153 PVRSVYLSFVPDEEIGGHDGAEKFADSHV---FNSLNVGIVLDE 193 (444)
Q Consensus 153 ~~~~i~~~~~~~EE~g~~~G~~~~~~~~~---~~~~d~~~~~~~ 193 (444)
++++|.|+++.+||.| +.|+..++++.. .+.+...+.+|.
T Consensus 369 p~r~I~f~~~~~EE~G-l~GS~~~~~~~~~~~~~~~~a~iNlD~ 411 (707)
T 3fed_A 369 PRRTIIFASWDAEEFG-LLGSTEWAEENVKILQERSIAYINSDS 411 (707)
T ss_dssp CSEEEEEEEESCGGGT-SHHHHHHHHHHHHHHHHHEEEEEECSC
T ss_pred CCCCEEEEEeCCcccc-chhHHHHHHhcchhhhhCEEEEEEecc
Confidence 9999999999999998 589999998642 123344566653
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.5e-08 Score=99.94 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc----CC
Q 013368 76 KPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS----GF 151 (444)
Q Consensus 76 ~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~----~~ 151 (444)
..||+++++|.....+.|++.+|+|++.+ |+.|+.+|++++|++++.|.+. +.
T Consensus 266 ~~NVi~~i~G~~~~~~~vvvgaH~Ds~~~-----------------------Ga~D~~sG~a~lLe~ar~l~~~~~~~g~ 322 (640)
T 3kas_A 266 ILNIFGVIKGFVEPDHYVVVGAQRDAWGP-----------------------GAAKSGVGTALLLKLAQMFSDMVLKDGF 322 (640)
T ss_dssp EEEEEEEECCSSEEEEEEEEEEECCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred EEEEEEEEeCCcCCCCceeeecccCCCCC-----------------------CCCcCcHHHHHHHHHHHHHHHhhhhcCC
Confidence 45999999987322368999999999732 6789999999999999999874 67
Q ss_pred CCcceEEEEeecCcccCccccHHHHHhccc--c-ccCceEEEecc
Q 013368 152 QPVRSVYLSFVPDEEIGGHDGAEKFADSHV--F-NSLNVGIVLDE 193 (444)
Q Consensus 152 ~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~--~-~~~d~~~~~~~ 193 (444)
+++++|.|+++.+||.| +.|+..++++.. + +++...+.+|.
T Consensus 323 ~p~r~I~f~~~~~EE~g-l~GS~~~~~~~~~~l~~~~~a~iNlD~ 366 (640)
T 3kas_A 323 QPSRSIIFASWSAGDFG-SVGATEWLEGYLSSLHLKAFTYINLDK 366 (640)
T ss_dssp CCSEEEEEEEESSGGGT-SHHHHHHHHHTTTTGGGTEEEEEECTT
T ss_pred CCCCcEEEEEECCcccC-chhHHHHHHhhhhhhhhCEEEEEeccc
Confidence 89999999999999998 589999998642 2 23334455553
|
| >3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0092 Score=57.77 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=60.6
Q ss_pred eEEEEe--cCCCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcc
Q 013368 78 LILLKW--PGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVR 155 (444)
Q Consensus 78 nl~~~~--~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~ 155 (444)
..++.+ +|+. .+.|+|.+|+|+ | + +|+|+.+|+|++++.++.|++. +++.
T Consensus 167 l~y~e~~ipG~t--~~~IllsaH~cH-P-----------------~------~ANDNaSG~a~lleLar~l~~~--~~~~ 218 (435)
T 3k9t_A 167 LTYGEYYIRGEL--EEEILLTTYTCH-P-----------------S------MCNDNLSGVALITFIAKALSKL--KTKY 218 (435)
T ss_dssp EEEEEEEECCSS--SCEEEEEEECCC-C-----------------S------CTTTTHHHHHHHHHHHHHHTTS--CCSS
T ss_pred eEEEEEEecCCC--CCEEEEEEEcCC-C-----------------C------CCCccchHHHHHHHHHHHHhcC--CCCc
Confidence 444554 7763 489999999996 2 2 4789999999999999998763 4789
Q ss_pred eEEEEeecCcccCccccHHHHHhcc--ccccCceEEEecc
Q 013368 156 SVYLSFVPDEEIGGHDGAEKFADSH--VFNSLNVGIVLDE 193 (444)
Q Consensus 156 ~i~~~~~~~EE~g~~~G~~~~~~~~--~~~~~d~~~~~~~ 193 (444)
++.|+|.+ | ..|+..++++. .++.+...+++|.
T Consensus 219 t~rFvf~p----g-~iGS~~yl~~~~~~l~~i~a~lnLDm 253 (435)
T 3k9t_A 219 SYRFLFAP----E-TIGSITWLSRNEDKLKNIKMGLVATC 253 (435)
T ss_dssp EEEEEEEC----T-THHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred eEEEEEcC----c-cHHHHHHHHhChHhhhceEEEEEEEE
Confidence 99999998 2 35888777654 2333444666663
|
| >3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.019 Score=57.21 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCce----eecCCcchHHHH-hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPE----IFPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~----~~~g~tD~~~~~-~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.|..++..+++++++.+.+..... ..+|+|++.+.. +.|+|++.+|.... .+|++.|-+..+++..+++++.
T Consensus 404 t~~~~~~~l~~ia~~~~Ip~Q~~v~r~D~~gGgTig~i~~s~~Gi~tvdIGiP~r---yMHS~~E~~~~~D~~~~v~Ll~ 480 (496)
T 3vat_A 404 SNAVSEALIREVASSVGVPLQDLMVRNDSPCGTTIGPILASRLGLRVLDLGSPQL---AMHSIRETACTTGVLQTITLFK 480 (496)
T ss_dssp CCHHHHHHHHHHHHHHTCCCEEECCCTTSCCCCCHHHHHHHHHTCEEEEEECEEE---STTSSSEEEESHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHhcccCCcEEEecHhhh---ccccHHHHhhHHHHHHHHHHHH
Confidence 367889999999999886552211 135778887665 57999999997766 4999999999999999999999
Q ss_pred HHHHHHHcccc
Q 013368 423 SIIKAYASYVQ 433 (444)
Q Consensus 423 ~~l~~l~~~~~ 433 (444)
.++..+....+
T Consensus 481 af~~~~~~~~~ 491 (496)
T 3vat_A 481 GFFELFPSLSR 491 (496)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHHhh
Confidence 99998876653
|
| >4eme_A M18 aspartyl aminopeptidase; dnpep/M18/aminopeptidase, protease, hydrolase; 2.60A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.03 Score=56.56 Aligned_cols=82 Identities=13% Similarity=0.014 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHHHh------cCCCCCce----eecCCcchHHHH-hcCCCeEEEccCCCCCCCCCCCCccccHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKA------NGKLGKPE----IFPASTDARYFR-ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLK 416 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~------~~~~~~~~----~~~g~tD~~~~~-~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~ 416 (444)
.+..++..+++++++. +.+..... ..+|+|++.+.. +.|+|++.+|.... .+|++.|-+...++..
T Consensus 472 tn~~~~~~l~~iA~~~~~~~~~gIP~Q~~v~rnD~~gGgTig~i~~s~~GIpTvdIGiP~r---yMHS~~E~~~~~Dv~~ 548 (571)
T 4eme_A 472 TSPLHASLIKRTFELYYNKYKQQIKYQNFMVKNDTPCGSTVGSMVAANLSMPGIDIGIPQL---AMHSIREIAAVHDVFF 548 (571)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCSSSCCCCCSHHHHHHHHTCCEEEEECEEE---STTSSSEEEEHHHHHH
T ss_pred cCHHHHHHHHHHHHhcccccCCCCCEEEEEEcCCCCCcchHHHHHHhCCCCcEEEechhhh---ccchHHHHhhHHHHHH
Confidence 3678899999999988 65431111 135778877665 67999999997766 4999999999999999
Q ss_pred HHHHHHHHHHHHHccc
Q 013368 417 GIDIYESIIKAYASYV 432 (444)
Q Consensus 417 ~~~~~~~~l~~l~~~~ 432 (444)
++++|..++..+..+.
T Consensus 549 ~vkLl~aFl~~~~~~~ 564 (571)
T 4eme_A 549 LIKGVFAFYTYYNQVL 564 (571)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 9999999999887655
|
| >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.034 Score=55.06 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee----ecCCcch-HHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEI----FPASTDA-RYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~----~~g~tD~-~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.+..+...+++++++.+.+...... .+|++|+ .+.++.|+|++-+|.... .+|++.|-+...++..++++|.
T Consensus 368 ~~~~~~~~~~~ia~~~~Ip~Q~~~~gr~d~~gGstig~i~a~~Gi~tvdiGiP~l---~MHS~~E~~~~~D~~~~~~l~~ 444 (450)
T 2glf_A 368 AHAEFVARVRKVLNEQGVIWQVATLGKVDQGGGGTIAKFFAERGSDVIDMGPALL---GMHSPFEISSKADLFETYVAYR 444 (450)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCSSSTTSCCCCCTHHHHHTTTSCEEEEECEEB---STTSSSEEEEHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHhCCCCcEEEechhhc---ccchHHHHhhHHHHHHHHHHHH
Confidence 4678888999999988765422112 3345554 455667999999997766 3999999999999999999999
Q ss_pred HHHHHH
Q 013368 423 SIIKAY 428 (444)
Q Consensus 423 ~~l~~l 428 (444)
.++..|
T Consensus 445 af~~~l 450 (450)
T 2glf_A 445 SLMEKL 450 (450)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 988753
|
| >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.015 Score=57.79 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=60.1
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCcee-----ecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHH
Q 013368 347 DSSNPWWNLLEEAVRKANGKLGKPEI-----FPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIY 421 (444)
Q Consensus 347 ~~~~~l~~~~~~a~~~~~~~~~~~~~-----~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~ 421 (444)
..+..+++.+.+++++.+.+...... .+|+|++.+++..|+|++.+|++.. .+|++.|.+..+++...+++|
T Consensus 376 ~~~~~~~~~l~~~a~~~~Ip~Q~~~~~r~d~~~GgT~~~~~a~~Gi~tvdiGiP~~---~mHS~~E~~~~~Di~~~~~ll 452 (458)
T 1y7e_A 376 DADAELVSYIRQLLNKNNIAWQVATLGKVEEGGGGTVAKFLAGYGIRTIDMGPAVI---SMHSPMEITSKFDLYNAYLAY 452 (458)
T ss_dssp --CHHHHHHHHHHHHHHTCCEEEEEECC-----CHHHHHHHHHHTCEEEEECCEEB---STTSSSEEEEHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeeccCCCCcCcHHHHHhCCCCCEEEEchhhc---ccchHHHHhhHHHHHHHHHHH
Confidence 34778899999999998876522222 4477888788888999999998876 499999999999999999999
Q ss_pred HHHH
Q 013368 422 ESII 425 (444)
Q Consensus 422 ~~~l 425 (444)
..++
T Consensus 453 ~af~ 456 (458)
T 1y7e_A 453 KAFY 456 (458)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8765
|
| >2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.024 Score=55.90 Aligned_cols=76 Identities=4% Similarity=0.059 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee---ecCCcchHHHH--hcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEI---FPASTDARYFR--ERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~---~~g~tD~~~~~--~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.|..+++.+.+++++.+.+...... .+|+||++.+. ..|+|++.+|++.. .+|++.|.+..+++...+++|.
T Consensus 343 ~~~~~~~~l~~~a~~~~Ip~Q~~~~~~d~~gGsd~g~i~~~~~Gi~tvdiGip~~---~mHS~~E~~~~~D~~~~~~ll~ 419 (428)
T 2ijz_A 343 TNSETAGFFRHLCQDSEVPVQSFVTRSDMGCGSTIGPITASQVGVRTVDIGLPTF---AMHSIRELAGSHDLAHLVKVLG 419 (428)
T ss_dssp CCHHHHTTTTHHHHHTCCCCCBCCCCSSCCCCCCCSTTTGGGGSCCEEEECCCCC---SCSSSSCCCCSSHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEEeCCCCccchHHHHHHhCCCCCEEEEchhhc---ccchHHHHhhHHHHHHHHHHHH
Confidence 4778888999999998876533222 55788887663 57999999998877 4999999999999999999998
Q ss_pred HHHH
Q 013368 423 SIIK 426 (444)
Q Consensus 423 ~~l~ 426 (444)
.++.
T Consensus 420 af~~ 423 (428)
T 2ijz_A 420 AFYA 423 (428)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8775
|
| >2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.046 Score=54.35 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHHHhcCCCCCcee-----ecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 013368 348 SSNPWWNLLEEAVRKANGKLGKPEI-----FPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYE 422 (444)
Q Consensus 348 ~~~~l~~~~~~a~~~~~~~~~~~~~-----~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~ 422 (444)
.+..+...+.+++++.+.+...... .+|+|.+.+++..|+|++-+|+... .+|++.|.+..+++...+++|.
T Consensus 380 ~~~~~~~~l~~ia~~~~Ip~Q~~~~gr~d~~~GgTig~~~a~~Gi~tvdiGiP~l---~MHS~~E~~~~~Di~~~~~l~~ 456 (461)
T 2glj_A 380 ANPEYIAELRRILSKESVNWQTAELGKVDQGGGGTIAYILAEYGMQVIDCGVALL---NMHAPWEISSKADIYETKNGYS 456 (461)
T ss_dssp CCHHHHHHHHHHHHHTCCCEEECCSSSSSSSCCCCTHHHHHTTTCBCCBBCCEEE---STTSSSEEEEHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeccCCCCcccHHHHHhCCCCCEEEEchhhc---ccchHHHHhhHHHHHHHHHHHH
Confidence 4678889999999998765422111 3477877777888999999998876 4999999999999999999987
Q ss_pred HHH
Q 013368 423 SII 425 (444)
Q Consensus 423 ~~l 425 (444)
.++
T Consensus 457 af~ 459 (461)
T 2glj_A 457 AFL 459 (461)
T ss_dssp TTS
T ss_pred HHH
Confidence 654
|
| >1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A | Back alignment and structure |
|---|
Probab=92.70 E-value=0.44 Score=44.07 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHhcCCCCCcee-ecCCcchHHHHhcCCCeEEEccCCC------------------CCCCCCCCCcc-
Q 013368 349 SNPWWNLLEEAVRKANGKLGKPEI-FPASTDARYFRERGLPAIGFSPMAN------------------TPILLHDHNEF- 408 (444)
Q Consensus 349 ~~~l~~~~~~a~~~~~~~~~~~~~-~~g~tD~~~~~~~gip~v~~gp~~~------------------~~~~~H~~~E~- 408 (444)
+..+.+.+.+.+++.+... .... ..+++|...|...|+|++.+..+.. .....|++...
T Consensus 175 ~~~l~~~~~~~~~~~gi~~-~~~~~~~~~sD~~~f~~~Gip~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~ 253 (284)
T 1tkj_A 175 DPVIEKTFKNYFAGLNVPT-EIETEGDGRSDHAPFKNVGVPVGGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSL 253 (284)
T ss_dssp SHHHHHHHHHHHHHHTCCC-EECCSSTTCSTHHHHHHTTCCEEEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCST
T ss_pred CHHHHHHHHHHHHHcCCCc-ccCCCCCCCCchHHHHHCCCCEEEeecCcccccccchhhccccccccCCCCCCCCCcCCh
Confidence 4456677777777766543 2112 2367899888889999987765410 01258998876
Q ss_pred --ccHHHHHHHHHHHHHHHHHHHccc
Q 013368 409 --LNQAEYLKGIDIYESIIKAYASYV 432 (444)
Q Consensus 409 --i~~~~l~~~~~~~~~~l~~l~~~~ 432 (444)
++.+.+....++++.++..|+..+
T Consensus 254 ~~id~~~l~~~~~~~~~~~~~la~~~ 279 (284)
T 1tkj_A 254 SNINDTALDRNSDAAAHAIWTLSSGT 279 (284)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987544
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=88.19 E-value=0.56 Score=46.41 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=49.2
Q ss_pred eecCCcchHHHHhcCCCeEEEccCCCC-CCCCCCC---CccccHHHHHHHHHHHHHHHHHHHcccc
Q 013368 372 IFPASTDARYFRERGLPAIGFSPMANT-PILLHDH---NEFLNQAEYLKGIDIYESIIKAYASYVQ 433 (444)
Q Consensus 372 ~~~g~tD~~~~~~~gip~v~~gp~~~~-~~~~H~~---~E~i~~~~l~~~~~~~~~~l~~l~~~~~ 433 (444)
...+++|...|...|+|++.+...... ....|++ -+.++.+.+.+..++++.++..++....
T Consensus 370 ~~~~~SD~~~f~~~GiP~~~l~~~~~~~~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~ 435 (444)
T 3iib_A 370 KASGGPDVSMLPALGVPVASLRQDGSDYFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANSKV 435 (444)
T ss_dssp CCCCCGGGTTSGGGTCCEEEEEECCTTGGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCccHHHHHCCCCEEEeecCCCcCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345789999898999999977664221 1257888 6789999999999999999999987653
|
| >2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.26 E-value=0.97 Score=44.62 Aligned_cols=78 Identities=12% Similarity=-0.003 Sum_probs=49.3
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceE----------EEeecCCCCeEEEEecCCCCCCCcEE
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ----------TLEFAKNKPLILLKWPGSNPQLPSIL 94 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~----------~~~~~~~~~nl~~~~~g~~~~~~~i~ 94 (444)
...++..+..++|+++=..| +.+..+.+.+.++|++.||+.- .+.......|+++...|..++.+.++
T Consensus 11 ~~~~~~~~~~~~~~~Fl~~s--~t~~h~v~~~~~~l~~~Gf~~l~e~~~l~~g~k~~~~r~~~~lia~~~g~~~~~g~~i 88 (450)
T 2glf_A 11 RKKEEIEAFSKEYMEFMSKA--KTERMTVKEIKRILDESGFVPLEDFAGDPMNMTVYAVNRGKAIAAFRVVDDLKRGLNL 88 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHTTTCEETTSCCSCTTSBCEEEESSSSCEEEEEBCSCGGGCCEE
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHCcCEEcccccCCCCCCEEEEEcCCCEEEEEEeCCCCCCCeEE
Confidence 34444444455555554443 4567788999999999998531 01111112589998777532347899
Q ss_pred EEeecccccC
Q 013368 95 LNSHTDVVPS 104 (444)
Q Consensus 95 l~~H~Dtvp~ 104 (444)
+.+|+|.+..
T Consensus 89 i~AH~Dsp~l 98 (450)
T 2glf_A 89 VVAHIDSPRL 98 (450)
T ss_dssp EEEECCCCEE
T ss_pred EEEecccCCe
Confidence 9999999843
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=86.95 E-value=4.3 Score=42.45 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=39.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCc-eEEEee
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLE-SQTLEF 72 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~-~~~~~~ 72 (444)
+.+++.+.|+.|.++|-.+++.++.++++|+++.|+++|++ ++..++
T Consensus 23 ~~~~i~~~l~~lt~~ph~aGt~~~~~~a~yi~~~~~~~Gl~~v~~~~y 70 (707)
T 3fed_A 23 KAENIKSFLRSFTKLPHLAGTEQNFLLAKKIQTQWKKFGLDSAKLVHY 70 (707)
T ss_dssp CHHHHHHHHHHHSSSCCCTTSHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCcCCCHhHHHHHHHHHHHHHHcCCCceeEEee
Confidence 55788999999999988877778889999999999999998 655443
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=86.57 E-value=3.7 Score=40.08 Aligned_cols=78 Identities=21% Similarity=0.151 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCCCCceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCcc---ccHHHHHHHHHHHHHHHHHHHcc
Q 013368 355 LLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEF---LNQAEYLKGIDIYESIIKAYASY 431 (444)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~---i~~~~l~~~~~~~~~~l~~l~~~ 431 (444)
.....+++++.. .+....+++|...|...|||++.|...... ...|++... ++.+.+....+++..++..++..
T Consensus 326 ~~~~~~~~~~~~--~~~~~~~~SD~~~F~~~GIP~~~~~~~~~~-~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~ 402 (421)
T 2ek8_A 326 LGAAASSRLSGV--LPYGQEGRSDHESFHALGIPAALFIHAPVE-PWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARP 402 (421)
T ss_dssp HHHHHHHHHTSC--CCEEECCSSTHHHHHTTTCCEEEEEEESCC-TTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHhcCCC--CCCCCCCCCccHHHHHCCCCEEEEECCcCC-CCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 344455665543 233445789998888899999877522221 257998887 89999999999999999999866
Q ss_pred ccCC
Q 013368 432 VQHS 435 (444)
Q Consensus 432 ~~~~ 435 (444)
...+
T Consensus 403 ~~~p 406 (421)
T 2ek8_A 403 GELV 406 (421)
T ss_dssp SCCC
T ss_pred CccC
Confidence 5443
|
| >3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=85.99 E-value=6.2 Score=39.14 Aligned_cols=120 Identities=10% Similarity=0.095 Sum_probs=70.2
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec----CCC-------------C-eEEEEecCCCCCCC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA----KNK-------------P-LILLKWPGSNPQLP 91 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~-------------~-nl~~~~~g~~~~~~ 91 (444)
.+.+.|+|++.|.-- -.....+++.++.+++.|++++.++.. .+. | -++.+|.|.++..+
T Consensus 199 ~~~~aRdL~n~P~n~--ltP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~~ 276 (515)
T 3kzw_A 199 SINLARDFSNMPPNV--LTPQTFAEDIVNHFKNTKVKVDVKDYDTLVSEGFGLLQAVGKGSKHKPRLVTITYNGKDKDEA 276 (515)
T ss_dssp HHHHHHHHHHSCTTT--SCHHHHHHHHHHHSTTSSCEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEESSCSSCC
T ss_pred HHHHHHHHhcCCccc--cCHHHHHHHHHHHHHhcCcEEEEEcHHHHHHcCCCcEEEEccCCCCCCEEEEEEECCCCCCCC
Confidence 355889999999842 345577888888888999999877643 122 1 22334444333334
Q ss_pred cEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 92 SILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 92 ~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
+|+|.|= +||=... -.| .+.+ .+=--+.+|.|+.+.+++++.+.+ ++.+|..+....|-.
T Consensus 277 ~i~LVGKGiTFDsGG~s-----lKp-------~~~M--~~MK~DM~GAAaVlg~~~a~a~l~--lpvnv~~~i~~~ENm 339 (515)
T 3kzw_A 277 PIALVGKGITYDSGGYS-----IKT-------KNGM--ATMKFDMCGAANVVGIIEAASRLQ--LPVNIVGVLACAENM 339 (515)
T ss_dssp CEEEEEEEEEEECCTTS-----CCC-------HHHH--TTGGGGGHHHHHHHHHHHHHHHTT--CSCEEEEEEEEEEEC
T ss_pred cEEEecCceEEecCCcC-----CCC-------ccCh--hhchhchHHHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 4554443 1221111 000 0000 011122467789999999999876 578899888888754
|
| >3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=85.74 E-value=6.7 Score=38.72 Aligned_cols=120 Identities=7% Similarity=-0.081 Sum_probs=70.9
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC-CCceEEEeec----CC-------------CC-eEEEEecCCCCCC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KN-------------KP-LILLKWPGSNPQL 90 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-G~~~~~~~~~----~~-------------~~-nl~~~~~g~~~~~ 90 (444)
.+.+.|+|++.|.-- -.....+++.++.++++ |++++.++.. .+ .| -++.+|.|.++..
T Consensus 166 ~~~~aRdL~n~P~n~--~~P~~~a~~a~~l~~~~~g~~v~V~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~ 243 (486)
T 3pei_A 166 GQNYAKDLQNLPANI--CTTDYMLNEARELTSKYATFSLDYLDQDAMAELGMGCALAVGRGSYMSNYTVCMEYKGGNEGD 243 (486)
T ss_dssp HHHHHHHHHHSCTTT--SCHHHHHHHHHHHHHTCTTEEEEEECHHHHHHTTCHHHHHHHTTCSSCCEEEEEEEECSCTTS
T ss_pred HHHHHHHHhcCChhh--cCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEeccCCCCCCEEEEEEECCCCCCC
Confidence 466889999999842 34567888888888888 8999877642 11 12 2334454433334
Q ss_pred CcEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 91 PSILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 91 ~~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
++|+|.|- +||=... .+- .+.+. +=--+++|.|+.+.+++++.+.+ ++.+|+.+....|-.
T Consensus 244 ~~i~LVGKGiTFDsGG~s----------lKp--~~~M~--~Mk~DM~GAAaVlg~~~a~a~l~--l~vnv~~~i~~~ENm 307 (486)
T 3pei_A 244 APIVLVGKGLVFDNGGIC----------IKQ--AAGMD--SMKMDMGGVAAVMGTMKAIAMLN--LPVNVVGVMGLAENA 307 (486)
T ss_dssp CCEEEEEEEEETEECC--------------------------EECSHHHHHHHHHHHHHHHHT--CSSEEEEEEEEEEC-
T ss_pred CcEEEEccceEEecCCcc----------cCC--ccchh--hhhccchHHHHHHHHHHHHHHcC--CCcEEEEEEEeeccC
Confidence 55665553 2221111 000 00110 00123477889999999999886 568999888888753
|
| >4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei} | Back alignment and structure |
|---|
Probab=84.28 E-value=7.6 Score=38.47 Aligned_cols=121 Identities=7% Similarity=-0.050 Sum_probs=70.3
Q ss_pred HHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecC----CCCeE--------------EEEecCCCCCC
Q 013368 29 SIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAK----NKPLI--------------LLKWPGSNPQL 90 (444)
Q Consensus 29 ~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~----~~~nl--------------~~~~~g~~~~~ 90 (444)
+.+.+.|+|++.|.-- -.....++..++.++++|++++.++... +.+.+ ...|.|.+...
T Consensus 205 ~~~~laRdLvn~P~N~--~tP~~lA~~a~~l~~~~gv~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~L~Y~g~~~~~ 282 (522)
T 4efd_A 205 TSTQLCQRLVDAPPNL--LTTATFTEIAQGYAKALGFDVDVICGDDLCERGYGGIYSVGKAAFEAPRLVTLLYTPKGTPV 282 (522)
T ss_dssp HHHHHHHHHHHSCTTT--SCHHHHHHHHHHHHHHHTCEEEEEETHHHHHHTCHHHHHHHTTSSSCCEEEEEEECCSSCCS
T ss_pred HHHHHHHHHhcCCchh--CCHHHHHHHHHHHHHHcCCEEEEEeHHHHHHcCCCcEEeeccCCCCCCEEEEEEECCCCCCC
Confidence 4577899999999842 3556788888888999999998876431 22222 23333332222
Q ss_pred CcEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCccc
Q 013368 91 PSILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEI 167 (444)
Q Consensus 91 ~~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~ 167 (444)
++|+|.|- +||=... .+- .+.+ .+=--+.+|.|+.+.+++++.+.+ ++.+|..+....|-.
T Consensus 283 ~~iaLVGKGITFDSGGls----------LKp--~~~M--~~MK~DMgGAAaVlga~~a~a~l~--lpvnV~~vl~~~ENm 346 (522)
T 4efd_A 283 KKVSLVGKGIVYDCGGLA----------LKP--ADYM--KLMKHDMGGAAAVFCGFLTAVRLQ--QPVQLSCTLCLAENA 346 (522)
T ss_dssp EEEEEEEEEEETCCCCSS----------SCH--HHHH--HHGGGTTHHHHHHHHHHHHHHHHT--CSEEEEEEEEEEECC
T ss_pred CcEEEecCceEeecCCcc----------CCC--ccch--hhcccccchHHHHHHHHHHHHHcC--CCceEEEEEEEeccC
Confidence 34444432 1111100 000 0000 000112367788889999998876 678899888888864
|
| >2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=84.21 E-value=0.56 Score=46.54 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=35.3
Q ss_pred eEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 123 NIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 123 ~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
.+.+++ -|++.++.++|.|++.+. +++..++++++..||+|+ .|+.
T Consensus 254 ~I~s~~-lDdr~~~~~~l~al~~~~----~~~~~~~~~~~d~EEVGs-~ga~ 299 (461)
T 2glj_A 254 MVMGYG-QDDRICAYTSFEAMLEMK----NAKKTCITILVDKEEVGS-IGAT 299 (461)
T ss_dssp EEEETT-HHHHHHHHHHHHHHHTCC----SCSSCEEEEEECCGGGTC-CTTT
T ss_pred EEEEec-chhHHHHHHHHHHHHhhc----cCCCeEEEEEEccCCCCC-cccc
Confidence 444444 899999999999877652 357899999999999986 4543
|
| >1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ... | Back alignment and structure |
|---|
Probab=84.13 E-value=2 Score=39.76 Aligned_cols=86 Identities=13% Similarity=0.027 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHhcCCCC-Ccee-ecCCcchHHHHhcCCCeEEEccC--CCCCCCCCCCCccccHHH-----HHHHHH
Q 013368 349 SNPWWNLLEEAVRKANGKLG-KPEI-FPASTDARYFRERGLPAIGFSPM--ANTPILLHDHNEFLNQAE-----YLKGID 419 (444)
Q Consensus 349 ~~~l~~~~~~a~~~~~~~~~-~~~~-~~g~tD~~~~~~~gip~v~~gp~--~~~~~~~H~~~E~i~~~~-----l~~~~~ 419 (444)
+..+.+.+.+++++.....+ .... ..++||...|.+.|+|++.+... .......|++.+.++.-+ +.+..+
T Consensus 198 ~~~l~~~l~~~a~~~~~~i~~~~~~~~~~~sD~~~f~~~GiP~~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~ 277 (299)
T 1rtq_A 198 DSNFTQYLTQLMDEYLPSLTYGFDTCGYACSDHASWHNAGYPAAMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQ 277 (299)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEECCSSCCSTHHHHHHTTCCEECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCccCCcccCCCCCCCCcHHHHHHCCCCEEEecccccccCCCCCCCccccccccCccHHHHHHHHH
Confidence 44566777777777632111 1111 12678998888899999754331 111125899998876654 478889
Q ss_pred HHHHHHHHHHccccC
Q 013368 420 IYESIIKAYASYVQH 434 (444)
Q Consensus 420 ~~~~~l~~l~~~~~~ 434 (444)
++..++.+|+..+..
T Consensus 278 l~~~~~~~La~~~~~ 292 (299)
T 1rtq_A 278 LGLAYAIEMGSATGD 292 (299)
T ss_dssp HHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHhCCCcC
Confidence 999999988765543
|
| >3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* | Back alignment and structure |
|---|
Probab=83.98 E-value=11 Score=37.40 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=72.7
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHC-CCceEEEeec----CCC-------------C-eEEEEecCCCCCC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEAL-SLESQTLEFA----KNK-------------P-LILLKWPGSNPQL 90 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~-G~~~~~~~~~----~~~-------------~-nl~~~~~g~~~~~ 90 (444)
.+.+.|+|++.|.-- -.....+++.++.++++ |++++.++.. .+. | -++.+|.|.++..
T Consensus 182 ~~~~aRdL~n~P~n~--~~P~~~a~~a~~l~~~~~g~~v~v~~~~~l~~~gmg~~laVg~gS~~pPrli~l~y~g~~~~~ 259 (497)
T 3h8g_F 182 GMAFTRDLGNLPPNL--CHPSFLAEQAKELGKAHKALKVEVLDEKKIKDLGMGAFYAVGQGSDQPPRLIVLNYQGGKKAD 259 (497)
T ss_dssp HHHHHHHHHHSCTTT--SCHHHHHHHHHHHHHHCTTEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSCTTS
T ss_pred HHHHHHHhhcCCccc--cCHHHHHHHHHHHHhhcCCceEEEEeHHHHHhCCCCcEEEEccCCCCCCEEEEEEECCCCCCC
Confidence 466789999998842 35567888888999999 9999877642 111 2 2334454433334
Q ss_pred CcEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccc---hhHHHHHHHHHHHHHHcCCCCcceEEEEeecC
Q 013368 91 PSILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFVPD 164 (444)
Q Consensus 91 ~~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~ 164 (444)
++|+|.|- +||=... -.| . .|=.+| ++|.|+.+.+++++.+.+ ++.+|+.+....
T Consensus 260 ~~i~LVGKGiTFDsGG~s-----lKp-------~-----~~M~~Mk~DM~GAAaV~g~~~a~a~l~--l~vnv~~~i~~~ 320 (497)
T 3h8g_F 260 KPFVLVGKGITFDTGGIS-----LKP-------G-----AGMDEMKYDMCGAASVFGTLRAVLELQ--LPVNLVCLLACA 320 (497)
T ss_dssp CCEEEEEEEEEEECCTTS-----CCC-------S-----TTGGGGGGTTHHHHHHHHHHHHHHHHT--CSSEEEEEEEEE
T ss_pred CcEEEEcCceEeccCCcc-----CCC-------c-----cchhhccccchHHHHHHHHHHHHHHcC--CCeEEEEEEEee
Confidence 55555553 2221111 000 0 011223 377789999999999886 568999998888
Q ss_pred ccc
Q 013368 165 EEI 167 (444)
Q Consensus 165 EE~ 167 (444)
|-.
T Consensus 321 ENm 323 (497)
T 3h8g_F 321 ENM 323 (497)
T ss_dssp EEC
T ss_pred ccC
Confidence 864
|
| >3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=83.96 E-value=5.2 Score=37.26 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHhcCCCCCceeec--CCcchHHHHh-cCCCeEEEccCC-----CCCCCCCCCC---ccccHHHHHHHHH
Q 013368 351 PWWNLLEEAVRKANGKLGKPEIFP--ASTDARYFRE-RGLPAIGFSPMA-----NTPILLHDHN---EFLNQAEYLKGID 419 (444)
Q Consensus 351 ~l~~~~~~a~~~~~~~~~~~~~~~--g~tD~~~~~~-~gip~v~~gp~~-----~~~~~~H~~~---E~i~~~~l~~~~~ 419 (444)
.+++.+.++++.++....-..... ..+|...|.+ .|||++.+.+.. .-....|++. |.++.+.+....+
T Consensus 221 ~l~~~~~~~a~~~g~~~~f~~~~~g~~~sDh~~f~~~~GiP~~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~ 300 (309)
T 3tc8_A 221 PIVEMVWSAARDLGYGKYFINAAGGAITDDHQYVISGRNIPSIDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQ 300 (309)
T ss_dssp HHHHHHHHHHHHHTCTTTEEEEECCCCCCHHHHHHHHHCCCEEEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeccCCCCCCCCccHHHHhcCCCCEEEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHH
Confidence 355666666666664321111122 3689888888 899999876541 1123689998 9999999999999
Q ss_pred HHHHHHHH
Q 013368 420 IYESIIKA 427 (444)
Q Consensus 420 ~~~~~l~~ 427 (444)
+...++++
T Consensus 301 ~~~~~vy~ 308 (309)
T 3tc8_A 301 TVLEVIYN 308 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998875
|
| >1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4 | Back alignment and structure |
|---|
Probab=83.62 E-value=0.28 Score=48.68 Aligned_cols=48 Identities=35% Similarity=0.394 Sum_probs=33.7
Q ss_pred CeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHH
Q 013368 122 GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAE 174 (444)
Q Consensus 122 g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~ 174 (444)
+.+.+++ -|++.+++++|.|++.+.+ +++.+++++++..||+|+ .|+.
T Consensus 247 ~~I~s~~-lDdr~~~~~~l~al~~~~~---~~~~~~~~~~~d~EEVGs-~ga~ 294 (458)
T 1y7e_A 247 ALIGAYG-QDDKICVFTSLESIFDLEE---TPNKTAICFLVDKEEIGS-TGST 294 (458)
T ss_dssp CEEEESS-HHHHHHHHHHHHHHSSSSC---CCSSCEECCCBCSTTC-------
T ss_pred CeEEEec-CccHHHHHHHHHHHHhhhc---cCCceEEEEEEcccccCc-ccch
Confidence 4555555 8999999999999876532 367899999999999996 5554
|
| >1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 | Back alignment and structure |
|---|
Probab=81.17 E-value=16 Score=36.36 Aligned_cols=117 Identities=12% Similarity=0.127 Sum_probs=71.5
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCC--CceEEEeecC----CC-------------C-eEEEEecCCCC-C
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALS--LESQTLEFAK----NK-------------P-LILLKWPGSNP-Q 89 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G--~~~~~~~~~~----~~-------------~-nl~~~~~g~~~-~ 89 (444)
+.+.|+|++-|.-- -.....+++.++.++++| ++++.++... +. | -|+.+|.|.++ .
T Consensus 184 ~~laRdL~n~P~N~--~tP~~lA~~a~~la~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~l~Y~g~~~~~ 261 (503)
T 1gyt_A 184 IKAAKDLGNMPPNI--CNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASED 261 (503)
T ss_dssp HHHHHHHHHSCTTT--CSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSSSCCEEEEEEEECCCCTT
T ss_pred HHHHHHHhcCChhh--cCHHHHHHHHHHHHHhcCCceEEEEEcHHHHHHCCCCceeeecccCCCCCeEEEEEECCCCCCC
Confidence 45789999998842 345578888888889999 9998776421 11 1 23344544332 2
Q ss_pred CCcEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccc---hhHHHHHHHHHHHHHHcCCCCcceEEEEeec
Q 013368 90 LPSILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFVP 163 (444)
Q Consensus 90 ~~~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 163 (444)
.++|+|.|= +||=... -.| +.|=.+| .+|.|+.+.+++++.+.+ ++.+|+.+...
T Consensus 262 ~~~i~LVGKGITFDsGGis-----lKp------------~~~M~~MK~DM~GAAaVlg~~~aia~l~--l~vnV~~~i~~ 322 (503)
T 1gyt_A 262 ARPIVLVGKGLTFDSGGIS-----IKP------------SEGMDEMKYDMCGAAAVYGVMRMVAELQ--LPINVIGVLAG 322 (503)
T ss_dssp CCCEEEEEEEEEEECCTTS-----CCC------------STTGGGGGGGGHHHHHHHHHHHHHHHHT--CSSEEEEEEEE
T ss_pred CCcEEEEcCceEecCCCcc-----ccC------------CcChhhcccccchHHHHHHHHHHHHHcC--CCeeEEEEEEe
Confidence 345555543 2221111 000 1122333 367789999999999886 56899999888
Q ss_pred CcccC
Q 013368 164 DEEIG 168 (444)
Q Consensus 164 ~EE~g 168 (444)
.|-.-
T Consensus 323 ~ENm~ 327 (503)
T 1gyt_A 323 CENMP 327 (503)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 88643
|
| >1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A* | Back alignment and structure |
|---|
Probab=80.27 E-value=19 Score=35.55 Aligned_cols=118 Identities=11% Similarity=-0.010 Sum_probs=69.5
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCC--CceEEEeec----CCCCeEE--------------EEecCCC-C
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALS--LESQTLEFA----KNKPLIL--------------LKWPGSN-P 88 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G--~~~~~~~~~----~~~~nl~--------------~~~~g~~-~ 88 (444)
.+.+.|+|++-|.-- -.....+++.++.++++| ++++.++.. .+.+.++ .+|.|.+ +
T Consensus 163 ~~~laRdLvn~P~N~--~tP~~lA~~a~~l~~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~~pPrli~l~y~g~~~~ 240 (484)
T 1lam_A 163 GQNLARRLMETPANE--MTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPNA 240 (484)
T ss_dssp HHHHHHHHHHSCTTT--SCHHHHHHHHHHHHHHHCSSEEEEEECHHHHHHTTCHHHHHHHTTSSSCCEEEEEEEECSSST
T ss_pred HHHHHHHhhCCChhh--cCHHHHHHHHHHHHHHcCCceEEEEEeHHHHHHCCCCceeeeccCCCCCCeEEEEEECCCCCC
Confidence 456789999999842 345678888888889999 888876542 1222222 3333322 1
Q ss_pred CCCcEEEEee---cccccCCCCCCccCCCcceecCCCeEEecCcccc---hhHHHHHHHHHHHHHHcCCCCcceEEEEee
Q 013368 89 QLPSILLNSH---TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDM---KCVGMQYLEAIRRLKASGFQPVRSVYLSFV 162 (444)
Q Consensus 89 ~~~~i~l~~H---~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~---k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~ 162 (444)
..++|+|.|= +||=... -.| +.|=.+| ++|.|+.+.+++++.+.+ ++.+|+.+..
T Consensus 241 ~~~~i~LVGKGITFDsGG~s-----lKp------------~~~M~~MK~DMgGAAaVlg~~~aia~l~--l~vnv~~~i~ 301 (484)
T 1lam_A 241 SEPPLVFVGKGITFDSGGIS-----IKA------------AANMDLMRADMGGAATICSAIVSAAKLD--LPINIVGLAP 301 (484)
T ss_dssp TSCCEEEEECEEEEECCTTS-----CCC------------STTGGGGGGTTHHHHHHHHHHHHHHHTT--CSSEEEEEEE
T ss_pred CCCcEEEEecceEEcCCCcC-----CcC------------ccchhhhhccchHHHHHHHHHHHHHHcC--CCeeEEEEEE
Confidence 1123444432 1111110 000 1111233 367789999999999876 5788999888
Q ss_pred cCcccC
Q 013368 163 PDEEIG 168 (444)
Q Consensus 163 ~~EE~g 168 (444)
..|-.-
T Consensus 302 ~~ENm~ 307 (484)
T 1lam_A 302 LCENMP 307 (484)
T ss_dssp EEEECC
T ss_pred eeccCC
Confidence 888643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 444 | ||||
| g1q7l.1 | 280 | c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain | 2e-45 | |
| g1q7l.1 | 280 | c.56.5.4 (A:,B:) Aminoacylase-1, catalytic domain | 3e-25 | |
| d1lfwa1 | 272 | c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV { | 3e-17 | |
| d1vgya1 | 262 | c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimel | 5e-15 | |
| d1cg2a1 | 276 | c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, | 1e-13 | |
| d1fnoa4 | 295 | c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti | 5e-13 | |
| d1fnoa4 | 295 | c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripepti | 3e-05 | |
| d1lfwa2 | 196 | d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba | 1e-09 | |
| d1rtqa_ | 291 | c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolyti | 4e-07 | |
| d2grea2 | 233 | c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid | 2e-04 | |
| d1z2la1 | 293 | c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydro | 5e-04 | |
| d3bi1a3 | 304 | c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypep | 5e-04 |
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Score = 79.3 bits (194), Expect = 3e-17
Identities = 38/203 (18%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLE---FAKNKPLILLKWP 84
D+I++ + ID+S+ + T +A++ + F
Sbjct: 14 DAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFANYAGRV 73
Query: 85 GSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIR 144
+ + H DVVP+ W+ PF +D +G I+ RGS D K + +
Sbjct: 74 NFGAGDKRLGIIGHMDVVPAGEG-WTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGML 132
Query: 145 RLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDY-- 202
LK +GF+P + + +EE G + + ++ D ++
Sbjct: 133 LLKEAGFKPKKKIDFVLGTNEETNW-VGIDYYLKHEPT--PDIVFSPDAEYPIINGEHYV 189
Query: 203 -RAFYAERCPWWLVIKARGAPGH 224
+ + + K G PGH
Sbjct: 190 PGSDPMVQTLLKVYEKQTGKPGH 212
|
| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} Length = 262 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Succinyl-diaminopimelate desuccinylase, catalytic domain species: Neisseria meningitidis [TaxId: 487]
Score = 72.7 bits (177), Expect = 5e-15
Identities = 46/274 (16%), Positives = 80/274 (29%), Gaps = 18/274 (6%)
Query: 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85
++ +E + + + PD + K + + + ++ + F K + L +
Sbjct: 1 TETQSLELAKELISRPS--VTPDDRDCQKLMAERLHKIGFAAEEMHFGNTKNIWLRRGTK 58
Query: 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRR 145
+ P + HTDVVP+ P + P + G ++ RG+ DMK ++ A R
Sbjct: 59 A----PVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACER 114
Query: 146 LKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVL-DEGLASTTEDYRA 204
A S+ L DEE DG K D + + E A
Sbjct: 115 FVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMI 174
Query: 205 FYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGE 264
R K E S RF + + E
Sbjct: 175 KNGRRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMAQEL-----IELG 229
Query: 265 VVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298
+ + + N P + I
Sbjct: 230 PSNATIHQINENVRL------NDIPKLSAVYEGI 257
|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Carboxypeptidase G2, catalytic domain species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Score = 68.4 bits (166), Expect = 1e-13
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 10/166 (6%)
Query: 18 IIFSSPAKSDDSIIERFRAYLQIDT-SQPNPDYTNASKFILAQAEALSLESQTLEFA--K 74
++F + ++I+ + I+T + A F+ A+ + L + A
Sbjct: 6 VLFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLV 65
Query: 75 NKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKC 134
I+ K G ++LL SH D V + + PF + G D K
Sbjct: 66 VGDNIVGKIKGRGG--KNLLLMSHMDTVYLKG-ILAKAPFRVE---GDKAYGPGIADDKG 119
Query: 135 VGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
L ++ LK G + ++ + F DEE G G+
Sbjct: 120 GNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSF-GSRDLIQEE 164
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Score = 67.3 bits (163), Expect = 5e-13
Identities = 40/227 (17%), Positives = 66/227 (29%), Gaps = 44/227 (19%)
Query: 28 DSIIERFRAYLQIDTSQPNPDYTNAS--------KFILAQAEALSLESQTLEFAKNKPLI 79
D ++ERF Y+ +DT + S + + Q E + L + TL L+
Sbjct: 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSEKGT--LM 59
Query: 80 LLKWPGSNPQLPSILLNSHTDVVPSEP--------------------------SKWSHHP 113
+P+I SH D P S
Sbjct: 60 ATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPV 119
Query: 114 FGAHLDSQ---GNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGH 170
L + D K + + A+ LK + P + ++F PDEE+G
Sbjct: 120 LHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI-PHGDIKVAFTPDEEVGK- 177
Query: 171 DGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIK 217
GA+ F +D G E + ++
Sbjct: 178 -GAKHFDVEAF--GAQWAYTVDGGGVGELEFENNMREKVVEHPHILD 221
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 350 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLPAIGFS-PMANTPILLHDHNEF 408
+P + + + + + TD GLP N H +EF
Sbjct: 216 HPHILDIAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYN----YHGKHEF 271
Query: 409 LNQAEYLKGIDIYESIIKAYA 429
+ K + + I + A
Sbjct: 272 VTLEGMEKAVQVIVRIAELTA 292
|
| >d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Score = 55.3 bits (132), Expect = 1e-09
Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 18/182 (9%)
Query: 156 SVYLSFVPDEEIGGHDGAEKFADSHVFN---SLNVGIVLDEGLASTTEDYRAF------- 205
++ SF D+ G + +KF N + + L + Y +F
Sbjct: 5 TLEFSFKNDDTKGDY-VLDKFKAGIATNVTPQVTRATISGPDLEAVKLAYESFLADKELD 63
Query: 206 -YAERCPWWLVIKARGAPGHGAKLYD-NSAMENLFKSIESVRRFRASQ----FDLVKAGL 259
E I G H + ++ L ++ + F
Sbjct: 64 GSFEINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHE 123
Query: 260 KAEGEVVSVNMAFLKAGTPSPNGFVM-NLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318
G+ + + G + + + +A ++R P TD +++ ++++++++
Sbjct: 124 DFYGKKLGIFHHDDLMGDLASSPSMFDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS 183
Query: 319 PA 320
Sbjct: 184 GI 185
|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Aeromonas proteolytica [TaxId: 671]
Score = 49.1 bits (116), Expect = 4e-07
Identities = 31/166 (18%), Positives = 48/166 (28%), Gaps = 27/166 (16%)
Query: 32 ERFRAYLQIDTSQPN-----PDYTNASKFILAQAEALSLESQTLEF------AKNKPLIL 80
+ + S N AS +I ++ +ALS N+ ++
Sbjct: 20 SQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVV 79
Query: 81 LKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYL 140
+ GS I++ H D + GA D
Sbjct: 80 MTITGSEAPDEWIVIGGHLDSTIGSHTNEQSVAPGAD-------------DDASGIAAVT 126
Query: 141 EAIRRLKASGFQPVRSVYLSFVPDEE---IGGHDGAEKFADSHVFN 183
E IR L + FQP RS+ EE G D A ++
Sbjct: 127 EVIRVLSENNFQPKRSIAFMAYAAEEVGLRGSQDLANQYKSEGKNV 172
|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Deblocking aminopeptidase YhfE species: Bacillus cereus [TaxId: 1396]
Score = 40.3 bits (94), Expect = 2e-04
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 46/198 (23%)
Query: 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQ 89
+E + + I + P+ + FI ++E++ NK ++L G N
Sbjct: 6 TMELIKELVSIPS--PSGNTAKIINFIENYVSEWNVETKR----NNKGALILTVKGKND- 58
Query: 90 LPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS 149
H AH+D+ D V + L+ I+RL+
Sbjct: 59 -------------------AQHRLLTAHVDTL---------DKVSVAIL-LKLIKRLQDE 89
Query: 150 GFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN--SLNVGIVLD------EGLASTTED 201
+ + +EEIG G ++++G + D ++ +D
Sbjct: 90 NVTLPYTTHFLISNNEEIGY--GGNSNIPEETVEYLAVDMGALGDGQASDEYTVSICAKD 147
Query: 202 YRAFYAERCPWWLVIKAR 219
Y LV A+
Sbjct: 148 SSGPYHYALRKHLVELAK 165
|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Allantoate amidohydrolase AllC catalytic domain species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (91), Expect = 5e-04
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 26/120 (21%)
Query: 47 PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106
P++ + + A LE+ + N + + G+ +L SH D V
Sbjct: 33 PEWLETQQQFKKRMAASGLET-RFDEVGN---LYGRLNGTEYPQEVVLSGSHIDTVV--- 85
Query: 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEE 166
G+ D + + AI LK P+R+V + + +EE
Sbjct: 86 -------------------NGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEE 126
|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 5e-04
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 31/164 (18%)
Query: 27 DDSIIERFRAYLQIDTSQPNP----DYTNASKFILAQAEALSLESQTLEFAKNKPL---- 78
D+ E + +L T P+ +K I +Q + L+S L
Sbjct: 7 DELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRI 66
Query: 79 --ILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVG 136
++ G+ ++L H D V
Sbjct: 67 YNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQ--------------------SGAAVV 106
Query: 137 MQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180
+ + + LK G++P R++ + EE G G+ ++A+ +
Sbjct: 107 HEIVRSFGTLKKEGWRPRRTILFASWDAEEFGLL-GSTEWAEEN 149
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 444 | |||
| g1q7l.1 | 280 | Aminoacylase-1, catalytic domain {Human (Homo sapi | 100.0 | |
| d1vgya1 | 262 | Succinyl-diaminopimelate desuccinylase, catalytic | 100.0 | |
| d1cg2a1 | 276 | Carboxypeptidase G2, catalytic domain {Pseudomonas | 99.95 | |
| d1lfwa1 | 272 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 99.94 | |
| d1fnoa4 | 295 | Peptidase T (tripeptidase), catalytic domain {Salm | 99.93 | |
| d1ysja1 | 261 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 99.92 | |
| d1xmba1 | 273 | IAA-amino acid hydrolase, catalytic domain {Mouse- | 99.89 | |
| d1vhea2 | 275 | Hypothetical protein YsdC, catalytic domain {Bacil | 99.87 | |
| d1yloa2 | 264 | Aminopeptidase YpdE {Shigella flexneri [TaxId: 623 | 99.85 | |
| d1z2la1 | 293 | Allantoate amidohydrolase AllC catalytic domain {E | 99.84 | |
| d2grea2 | 233 | Deblocking aminopeptidase YhfE {Bacillus cereus [T | 99.83 | |
| d1vhoa2 | 248 | Putative endoglucanase TM1048, catalytic domain {T | 99.83 | |
| d2fvga2 | 255 | Endoglucanase TM1049 {Thermotoga maritima [TaxId: | 99.82 | |
| d1r3na1 | 322 | Peptidase-like beta-alanine synthase, catalytic do | 99.77 | |
| d1tkja1 | 277 | Aminopeptidase {Streptomyces griseus [TaxId: 1911] | 99.67 | |
| d1rtqa_ | 291 | Aminopeptidase {Aeromonas proteolytica [TaxId: 671 | 99.65 | |
| d1vgya2 | 113 | Succinyl-diaminopimelate desuccinylase {Neisseria | 99.65 | |
| d1ysja2 | 115 | Protein YxeP {Bacillus subtilis [TaxId: 1423]} | 99.61 | |
| d1cg2a2 | 113 | Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 | 99.6 | |
| d1xmba2 | 119 | IAA-amino acid hydrolase {Mouse-ear cress (Arabido | 99.58 | |
| d3bi1a3 | 304 | Glutamate carboxypeptidase II FOLH1 {Human (Homo s | 99.42 | |
| d1z2la2 | 117 | Allantoate amidohydrolase AllC {Escherichia coli [ | 99.37 | |
| d2afwa1 | 329 | Glutaminyl-peptide cyclotransferase, QPCT {Human ( | 99.35 | |
| d1r3na2 | 116 | Peptidase-like beta-alanine synthase {Yeast (Sacch | 99.32 | |
| d1de4c3 | 294 | Transferrin receptor ectodomain, protease-like dom | 99.31 | |
| d1lfwa2 | 196 | Aminopeptidase PepV {Lactobacillus delbrueckii [Ta | 99.13 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 98.44 | |
| d1y0ya2 | 255 | Frv operon protein FrvX, catalytic domain {Pyrococ | 97.53 | |
| d1y7ea2 | 322 | Probable aminopeptidase ApeA {Borrelia burgdorferi | 95.19 | |
| d1y7ea2 | 322 | Probable aminopeptidase ApeA {Borrelia burgdorferi | 95.17 | |
| d1fnoa3 | 113 | Peptidase T (tripeptidase) {Salmonella typhimurium | 95.1 |
| >d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Succinyl-diaminopimelate desuccinylase, catalytic domain species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=9e-37 Score=284.97 Aligned_cols=242 Identities=20% Similarity=0.251 Sum_probs=174.5
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
..+.++++++|++|||+| ++|.++++||+++|+++||+++.++.. +.+|+++...+ +.|+|+|+||+||||+++
T Consensus 2 ~~e~lell~~Lv~i~S~s--~~e~~~a~~l~~~l~~~G~~~~~~~~~-~~~nv~~~~~~---~~~~l~l~~H~DtVp~g~ 75 (262)
T d1vgya1 2 ETQSLELAKELISRPSVT--PDDRDCQKLMAERLHKIGFAAEEMHFG-NTKNIWLRRGT---KAPVVCFAGHTDVVPTGP 75 (262)
T ss_dssp CSHHHHHHHHHHTSCCBT--TCCTTHHHHHHHHHHTTTCEEEECCBT-TBCEEEEEECS---SSSEEEEEEECCBCCCCC
T ss_pred cHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEeC-CccEEEEEecC---CCCeEEEEeccccccCCc
Confidence 357899999999999997 578889999999999999999887754 67799998643 348999999999999987
Q ss_pred -CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccc--
Q 013368 107 -SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFN-- 183 (444)
Q Consensus 107 -~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~-- 183 (444)
+.|+.+||+++++ ||++||||++|||++++++|.|++.+.+.+..+++++.|+|++|||.++..|++++++.....
T Consensus 76 ~~~w~~~p~~~~~~-dg~iyGrGa~D~Kg~~a~~l~a~~~l~~~~~~~~~~~~l~~~~dEE~~~~~G~~~l~~~~~~~~~ 154 (262)
T d1vgya1 76 VEKWDSPPFEPAER-DGRLYGRGAADMKTSIACFVTACERFVAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDE 154 (262)
T ss_dssp GGGSSSCTTSCEEE-TTEEESTTTTTTHHHHHHHHHHHHHHHHHCTTCSSEEEEEEESCSSSCCTTSHHHHHHHHHHTTC
T ss_pred cccccccccccEEE-cCceEeeccccccccHHHHHHHHHHHHHhcccCCCCeEEEEEecCccccccCHHHHHhHhhhcCC
Confidence 7899999999998 999999999999999999999999999998889999999999998877778999999854222
Q ss_pred cCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCC----------CCCC-CHHHHHHHHHHHHHhchhhhh
Q 013368 184 SLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAK----------LYDN-SAMENLFKSIESVRRFRASQF 252 (444)
Q Consensus 184 ~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~----------p~~g-nai~~~~~~i~~l~~l~~~~~ 252 (444)
..|++++.+ |+....+.....+..+......|..+|.+. ++.. +++...++++..+. ..
T Consensus 155 ~~~~~ivgE-----pt~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~---~~-- 224 (262)
T d1vgya1 155 LIDYCIVGE-----PTAVDKLGDMIKNGRRPFLTQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAMA---QE-- 224 (262)
T ss_dssp CEEEEEECC-----CCBSSSTTSEEECEECCEECCSSHHHHHHHHHHHHHHSSCCEEECCSCCCTHHHHGGGE---EE--
T ss_pred CcccccccC-----CCCccceeeEEEeeeeeeeccccccchhhhhHHHHhhhHHHHHhcchhhhhHHHHHhhC---cc--
Confidence 246666654 553222211112222233333333322211 1111 11111112221111 10
Q ss_pred HHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEe
Q 013368 253 DLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDI 298 (444)
Q Consensus 253 ~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~ 298 (444)
....+ .+|+|++.|++|. +.|+||++|++++++
T Consensus 225 ------~~~lg-~~t~nvg~I~gG~------~~NvVP~~a~i~~~i 257 (262)
T d1vgya1 225 ------LIELG-PSNATIHQINENV------RLNDIPKLSAVYEGI 257 (262)
T ss_dssp ------EEECC-SBCTTTTSTTCEE------ETTHHHHHHHHHHHH
T ss_pred ------ccccC-CCceEEEEeecCC------CcccCCCccchHHHH
Confidence 11122 3578999999997 999999999876654
|
| >d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Carboxypeptidase G2, catalytic domain species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Probab=99.95 E-value=2.1e-28 Score=228.81 Aligned_cols=158 Identities=21% Similarity=0.286 Sum_probs=136.5
Q ss_pred CChhHHHHHHHhhhcccCCCCCCCh---hHHHHHHHHHHHHCCCceEEEeecC--CCCeEEEEecCCCCCCCcEEEEeec
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDY---TNASKFILAQAEALSLESQTLEFAK--NKPLILLKWPGSNPQLPSILLNSHT 99 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e---~~~~~~l~~~l~~~G~~~~~~~~~~--~~~nl~~~~~g~~~~~~~i~l~~H~ 99 (444)
.+.+++++.|++|++|||+| .++ .++++|+.++|+++|++++.++... .++|++++++|.+ .++|+|+||+
T Consensus 13 ~~~~~~i~~L~~lv~i~S~s--~~~~~~~~~a~~l~~~l~~lG~~~~~~~~~~~~~~~nv~a~~~g~~--~~~vll~~H~ 88 (276)
T d1cg2a1 13 DEQPAVIKTLEKLVNIETGT--GDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRG--GKNLLLMSHM 88 (276)
T ss_dssp HHHHHHHHHHHHHHTSCCBT--TCHHHHHHHHHHHHHHHHHTTCEEEEEECSTTCCSEEEEEEEECSS--CCCEEEEEEC
T ss_pred HhHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCEEEEEECCCC--CCeEEEEecc
Confidence 35678999999999999986 444 4688999999999999999877542 3569999998764 4899999999
Q ss_pred ccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 100 DVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 100 Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
||||+. +.|..+||+ ++ ++++||||++|||++++++|.+++.|++.+.+++++|.|+|+++||.|+ .|+++++++
T Consensus 89 DtV~~~-~~w~~~Pf~--~~-~~~l~G~G~~D~k~g~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~g~~~~~~~ 163 (276)
T d1cg2a1 89 DTVYLK-GILAKAPFR--VE-GDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGS-FGSRDLIQE 163 (276)
T ss_dssp CBSCCT-THHHHSCCE--EE-TTEEECTTTTTTHHHHHHHHHHHHHHHHTTCCCSSEEEEEEESCGGGTT-TTTHHHHHH
T ss_pred cccccc-cccCCCcce--ee-cCeeeecccccccccHHHHHHHHHHHHHcCCCCCCCEEEEEEccccccc-ccHHHHHHh
Confidence 999986 579999994 66 9999999999999999999999999999998899999999999999996 799999886
Q ss_pred cccccCceEEEec
Q 013368 180 HVFNSLNVGIVLD 192 (444)
Q Consensus 180 ~~~~~~d~~~~~~ 192 (444)
.. ...|++++++
T Consensus 164 ~~-~~~d~~i~~E 175 (276)
T d1cg2a1 164 EA-KLADYVLSFE 175 (276)
T ss_dssp HH-HHCSEEEECC
T ss_pred cc-ccCCEEEEec
Confidence 43 3468888875
|
| >d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Probab=99.94 E-value=7e-27 Score=217.99 Aligned_cols=157 Identities=22% Similarity=0.362 Sum_probs=129.6
Q ss_pred CCChhHHHHHHHhhhcccCCCCCCC----------hhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEec-CCCCCCCc
Q 013368 24 AKSDDSIIERFRAYLQIDTSQPNPD----------YTNASKFILAQAEALSLESQTLEFAKNKPLILLKWP-GSNPQLPS 92 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s~~~~----------e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~-g~~~~~~~ 92 (444)
+..+++++++|++|++|||+|+..+ ..++.+++.++++++|++++.++ |+++... |. +.|+
T Consensus 10 ~~~~d~~l~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~g~--~~~~ 81 (272)
T d1lfwa1 10 EAKKDAILKDLEELIAIDSSEDLENATEEYPVGKGPVDAMTKFLSFAKRDGFDTENFA------NYAGRVNFGA--GDKR 81 (272)
T ss_dssp HTTHHHHHHHHHHHHTSCCBCCGGGCCSSSTTCHHHHHHHHHHHHHHHHTTCEEEEET------TTEEEEEECC--CSSE
T ss_pred HHHHHHHHHHHHHHhCCCCcCCCcccccccccchHHHHHHHHHHHHHHHcCCeeeeeC------ceEEEEEcCC--CCCE
Confidence 5678999999999999999974321 24567788889999999987543 3444443 33 4589
Q ss_pred EEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCcccc
Q 013368 93 ILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDG 172 (444)
Q Consensus 93 i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G 172 (444)
|+|+||+||||++ +.|+++||++.++++|++||||++|||+++++++.|++.|++.+.+++++|.|+++++||+|+ .|
T Consensus 82 i~l~~H~DvVp~~-~~W~~dPf~~~i~~dg~l~GrG~~D~k~~~~~~~~a~~~l~~~~~~~~~~i~~~~~~~EE~g~-~g 159 (272)
T d1lfwa1 82 LGIIGHMDVVPAG-EGWTRDPFKMEIDEEGRIYGRGSADDKGPSLTAYYGMLLLKEAGFKPKKKIDFVLGTNEETNW-VG 159 (272)
T ss_dssp EEEEEECCBCCCC-SCCSSCTTSCEECTTCEEESTTSSSSHHHHHHHHHHHHHHHHHTCCCSSEEEEEEESCTTTTC-HH
T ss_pred EEEEeccceeecc-CCceeccccccccccceeeecccccccccHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccCC-cc
Confidence 9999999999987 579999999986438999999999999999999999999999998999999999999999997 69
Q ss_pred HHHHHhccccccCceEEEec
Q 013368 173 AEKFADSHVFNSLNVGIVLD 192 (444)
Q Consensus 173 ~~~~~~~~~~~~~d~~~~~~ 192 (444)
++++++++. ..|+++..|
T Consensus 160 ~~~~~~~~~--~~~~~~~~d 177 (272)
T d1lfwa1 160 IDYYLKHEP--TPDIVFSPD 177 (272)
T ss_dssp HHHHHHHSC--CCSEEEESS
T ss_pred HHHHHHhCC--CCCeEEecc
Confidence 999998653 235555554
|
| >d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase T (tripeptidase), catalytic domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=8.3e-26 Score=213.80 Aligned_cols=253 Identities=21% Similarity=0.267 Sum_probs=189.2
Q ss_pred hHHHHHHHhhhcccCCCCC--------CChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCC-CCCCcEEEEee
Q 013368 28 DSIIERFRAYLQIDTSQPN--------PDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSN-PQLPSILLNSH 98 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~--------~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~-~~~~~i~l~~H 98 (444)
+++++.|.+|++|||+|.. .+|.++++||+++|+++|+++..++. ..|+++.+.+.. ...|+++|.+|
T Consensus 2 ~~~l~~l~~lv~i~S~S~~~~~~~p~~~~e~~~a~~l~~~l~~lG~~~~~id~---~g~~~~~~~~~~~~~~~~v~~~~H 78 (295)
T d1fnoa4 2 DKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEEMGLVNITLSE---KGTLMATLPANVEGDIPAIGFISH 78 (295)
T ss_dssp CSHHHHHHHHHTSCCBCCSSCSSSSSSHHHHHHHHHHHHHHHHHTCEEEEECT---TCCEEEEECCSSCSCCCCEEEEEE
T ss_pred HHHHHHHHHHccccccCCCccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC---CCcEEEEecccCCCCCcceEEEEE
Confidence 5789999999999998742 24789999999999999999877763 448888876542 34589999999
Q ss_pred cccccCCC--------------------------CCCccCCCcceecCCCeEEecCc----ccchhHHHHHHHHHHHHHH
Q 013368 99 TDVVPSEP--------------------------SKWSHHPFGAHLDSQGNIFARGS----QDMKCVGMQYLEAIRRLKA 148 (444)
Q Consensus 99 ~Dtvp~~~--------------------------~~W~~~Pf~~~~~~~g~l~GrG~----~D~k~~~a~~l~a~~~l~~ 148 (444)
+||||... +.|+.+++..... +..++|||. +|+|+|+++++.|++.+.+
T Consensus 79 ~Dtv~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~g~~~~~~D~k~G~aa~l~a~~~l~~ 157 (295)
T d1fnoa4 79 VDTSPDFSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLG-QTLITTDGKTLLGADDKAGVAEIMTALAVLKG 157 (295)
T ss_dssp CCBCTTSCCSSCCCEEETTCCSSCEECSSSSCEECTTTCGGGGGCTT-SCEEECCSSSCCCHHHHHHHHHHHHHHHHHHS
T ss_pred eCCcCCcCccccCceeecccCCCceeccccccccCccccCCceEEeC-CcEEECCceeeecccchhhHHHHHHHHHHHHh
Confidence 99999753 1356667777776 889999994 7999999999999999988
Q ss_pred cCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCC
Q 013368 149 SGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKL 228 (444)
Q Consensus 149 ~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p 228 (444)
.+. ..++|.+.|+++||.+. .|+....+ .++ .++++++|..
T Consensus 158 ~~~-~~~~v~~~~t~~EE~~~-gg~~~~~~--~~~-~~~~i~~D~~---------------------------------- 198 (295)
T d1fnoa4 158 NPI-PHGDIKVAFTPDEEVGK-GAKHFDVE--AFG-AQWAYTVDGG---------------------------------- 198 (295)
T ss_dssp SSC-CCCCEEEEEESCGGGTC-TTTTCCHH--HHC-CSEEEECCCC----------------------------------
T ss_pred cCC-CCCceecccccceecCc-chhhccHh--HcC-CcEEEEecCC----------------------------------
Confidence 775 46899999999999873 34433222 222 3555544310
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHH
Q 013368 229 YDNSAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAES 308 (444)
Q Consensus 229 ~~gnai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~ 308 (444)
..|. ...
T Consensus 199 ---------------------------------------------~~~~------~~~---------------------- 205 (295)
T d1fnoa4 199 ---------------------------------------------GVGE------LEF---------------------- 205 (295)
T ss_dssp ---------------------------------------------STTB------EEC----------------------
T ss_pred ---------------------------------------------Cccc------cce----------------------
Confidence 0000 000
Q ss_pred HHHHHHHHhccCCCCceEEEeecccccccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCC
Q 013368 309 LERRIVEEWAPASRNMTFEFKQRASLHDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP 388 (444)
Q Consensus 309 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip 388 (444)
.. .+. .....+.++++.+.+++++.+... .....+|+||+++|+..|+|
T Consensus 206 --------------------~~---------~~~-~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~g~sD~~~~~~~Gip 254 (295)
T d1fnoa4 206 --------------------EN---------NMR-EKVVEHPHILDIAQQAMRDCHITP-EMKPIRGGTDGAQLSFMGLP 254 (295)
T ss_dssp --------------------CB---------CCH-HHHHTSTHHHHHHHHHHHHTTCCC-BCCCBSSCCHHHHHTTTTCC
T ss_pred --------------------ee---------ecc-ccccCCHHHHHHHHHHHHhcCCCc-eEeecCCCCHHHHHHhcCCC
Confidence 00 000 012224578888888888887765 44566789999999999999
Q ss_pred eEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHc
Q 013368 389 AIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKAYAS 430 (444)
Q Consensus 389 ~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~l~~ 430 (444)
++.|||+.. .+|+++|+++++++.++++++..+++..++
T Consensus 255 ~~~lg~~~~---~~Ht~~E~v~i~dl~~~~~ll~~~i~~~a~ 293 (295)
T d1fnoa4 255 CPNLFTGGY---NYHGKHEFVTLEGMEKAVQVIVRIAELTAK 293 (295)
T ss_dssp CCEECCSEE---STTSTTCEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCc---cCCCCccEEEHHHHHHHHHHHHHHHHHHhh
Confidence 999999865 599999999999999999999999987764
|
| >d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Protein YxeP species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=4.2e-25 Score=201.57 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=133.4
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
.++++++.|+|+++|+.+ .+|.+++++|.++|+++|+++. +......++++.+.|.++ +|+|+|++|||++|..+
T Consensus 4 ~~~li~~rr~lh~~PEl~--~~E~~T~~~i~~~L~~~G~~v~--~~~~~~tgv~a~~~g~~~-gp~Ialrad~DALp~~e 78 (261)
T d1ysja1 4 HTRLINMRRDLHEHPELS--FQEVETTKKIRRWLEEEQIEIL--DVPQLKTGVIAEIKGRED-GPVIAIRADIDALPIQE 78 (261)
T ss_dssp HHHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHHHTTCEEC--CCTTCSSCEEEEEECSSC-CCEEEEEEECCCBSCCC
T ss_pred HHHHHHHHHHHHhCcCcC--ChHHHHHHHHHHHHHHCCCeEE--EecCCceEEEEEECCCCc-CceEEEEecccccchhh
Confidence 478999999999999996 7999999999999999999875 333245689999987654 59999999999999875
Q ss_pred CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCc
Q 013368 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLN 186 (444)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d 186 (444)
+ +..||+... +|..++||. .++++++|.+++.|.+.+.+++++|+|+|+|+||.++ |+..|++++.++++|
T Consensus 79 ~--~~~~~~s~~--~G~~HaCGH---d~h~a~~lgaA~~l~~~~~~~~G~v~lifqPaEE~~~--Ga~~mi~~G~~d~vd 149 (261)
T d1ysja1 79 Q--TNLPFASKV--DGTMHACGH---DFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAA--GARKVLEAGVLNGVS 149 (261)
T ss_dssp C--CCCTTCCSS--TTCBCTTSH---HHHHHHHHHHHHHHHTCGGGCSSEEEEEEESCTTTTC--HHHHHHHTTTTTTEE
T ss_pred h--ccCcccccc--CCceeccCc---chHHHHHHHHHHHHHHhcccCCCeEEEecccCccccc--chHHHHHcCCccccC
Confidence 3 446777654 788888774 4788899999999998777789999999999999875 999999999999999
Q ss_pred eEEEeccCCCCcCC
Q 013368 187 VGIVLDEGLASTTE 200 (444)
Q Consensus 187 ~~~~~~~g~~~p~~ 200 (444)
.++.++..+..|.+
T Consensus 150 ~~~~~H~~p~~p~G 163 (261)
T d1ysja1 150 AIFGMHNKPDLPVG 163 (261)
T ss_dssp EEEEEEEETTSCTT
T ss_pred eeEEEccCCCCCCe
Confidence 88888765444544
|
| >d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: IAA-amino acid hydrolase, catalytic domain species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.89 E-value=1.4e-22 Score=187.15 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=119.8
Q ss_pred CCCCChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeeccc
Q 013368 22 SPAKSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDV 101 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dt 101 (444)
......++++++.|+|+++|+.+ .+|.+++++|+++|+++|++++.-. +..++++.+.+ ++ .|+|+|++|||+
T Consensus 7 ~~~e~~~~li~~rr~lh~~PEl~--~~E~~T~~~i~~~L~~~g~~~~~~~---~~tg~~a~~~~-~~-~~~i~~rad~Da 79 (273)
T d1xmba1 7 KSPEVFDWMVKIRRKIHENPELG--YEELETSKLIRSELELIGIKYRYPV---AITGVIGYIGT-GE-PPFVALRADMDA 79 (273)
T ss_dssp ---------------HHHSCCCT--TCCHHHHHHHHHHHHHHTCCEEEEE---TTTEEEEEEES-SS-SCEEEEEEECCC
T ss_pred hChHHHHHHHHHHHHHHhCcCcC--CcHHHHHHHHHHHHHHCCCeEEecC---CceEEEEEECC-Cc-ceEEEEeccccc
Confidence 34456689999999999999996 7999999999999999999987422 45689999853 33 489999999999
Q ss_pred ccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccc
Q 013368 102 VPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHV 181 (444)
Q Consensus 102 vp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~ 181 (444)
+|..+. +..||.... .|.+|+||+. ++++++|.+++.|++...+++++|+|+|+|+||.++ |+..|++.+.
T Consensus 80 lp~~e~--~~~~~~s~~--~g~~HaCGHd---~h~a~~l~aa~~l~~~~~~~~g~v~~ifqPaEE~~~--Ga~~mi~~G~ 150 (273)
T d1xmba1 80 LPIQEG--VEWEHKSKI--AGKMHACGHD---GHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLS--GAKKMREEGA 150 (273)
T ss_dssp BSCCCC--CCSTTCCSS--TTCBCCSSHH---HHHHHHHHHHHHHHHTGGGCSSEEEEEEECCTTTTC--HHHHHHHTTT
T ss_pred cccccc--cCcccccCC--CCcccccccc---hHHHHHHHHHHHHHHhhhcCCCeEEEEEeccccccc--chhHHHHcCC
Confidence 999752 334666554 7899999975 789999999999999877789999999999999875 9999999999
Q ss_pred cccCceEEEecc
Q 013368 182 FNSLNVGIVLDE 193 (444)
Q Consensus 182 ~~~~d~~~~~~~ 193 (444)
++++|.++.++.
T Consensus 151 ~~~vd~~~~~H~ 162 (273)
T d1xmba1 151 LKNVEAIFGIHL 162 (273)
T ss_dssp TTTEEEEEEEEE
T ss_pred cCCCCeeEEEee
Confidence 998898888874
|
| >d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Hypothetical protein YsdC, catalytic domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=4.4e-21 Score=179.19 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=111.8
Q ss_pred hhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCC
Q 013368 27 DDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEP 106 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~ 106 (444)
.++.+++|++|++|||+| ++|.++++||+++|+++|++++.. ...|++++++|..+ .|+|+|.|||||||...
T Consensus 2 ~~~~~~~l~~l~~i~s~s--g~E~~v~~~l~~~l~~~g~~~~~D----~~gN~i~~~~g~~~-~~~i~l~~H~D~v~~~~ 74 (275)
T d1vhea2 2 LDETLTMLKDLTDAKGIP--GNEREVRQVMKSYIEPFADEVTTD----RLGSLIAKKTGAEN-GPKIMIAGHLDEVPHFE 74 (275)
T ss_dssp CCHHHHHHHHHHHSCCCT--TCCHHHHHHHHHHHGGGCSEEEEC----TTCCEEEEEESSTT-SCEEEEEEECCCCECCC
T ss_pred hHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHHcCCEEEEe----CCCcEEEEecCCCC-CCceeeecccccccccc
Confidence 367899999999999986 889999999999999999988743 34599999988654 58999999999999863
Q ss_pred CCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 107 SKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 107 ~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
. ...+ ++..++.|+.|+|+|++++|++++.|++.+ +..++.++|+.+||.|+ .|+..+...
T Consensus 75 ~--------~~~~-~~~~~~~~~~Dd~~Gva~~l~~~~~l~~~~--~~~~v~~~~~~~EE~G~-~Ga~~~~~~ 135 (275)
T d1vhea2 75 F--------TVMN-NEKFLLAKAWDNRIGCAIAIDVLRNLQNTD--HPNIVYGVGTVQEEVGL-RGAKTAAHT 135 (275)
T ss_dssp C--------EECS-STTEEEETTHHHHHHHHHHHHHHHHHHTSC--CSSEEEEEEESCCTTTS-HHHHHHHHH
T ss_pred c--------eeee-cccccccCcccCccCHHHHHHHHHHHhcCC--CCceEEEEEecccccCC-cchhhhhhc
Confidence 1 1222 666666677999999999999999997654 57899999999999995 799887764
|
| >d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase YpdE species: Shigella flexneri [TaxId: 623]
Probab=99.85 E-value=8.5e-20 Score=169.30 Aligned_cols=138 Identities=20% Similarity=0.302 Sum_probs=113.3
Q ss_pred HHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCc
Q 013368 31 IERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWS 110 (444)
Q Consensus 31 ~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~ 110 (444)
+++|++|+++||+| ++|.+++++|+++|+++|++++. + +..|+++++.|.. .|+|+|.+|+|+|+...
T Consensus 3 ~~ll~~l~~~~s~s--g~E~~~~~~~~~~l~~~~~~v~~-D---~~gNi~~~~~~~~--~~~v~~~~H~D~~~~~~---- 70 (264)
T d1yloa2 3 LSLLKALSEADAIA--SSEQEVRQILLEEAARLQKEVRF-D---GLGSVLIRLNEST--GPKVMICAHMDEVFDTT---- 70 (264)
T ss_dssp HHHHHHHHHSCCBT--TBCHHHHHHHHHHHHHTTCCEEE-C---TTCCEEEECCCCS--SCEEEEEEECCCCECCC----
T ss_pred HHHHHHHHcCCCCC--cCHHHHHHHHHHHHHhcCCEEEE-c---CCCcEEEEECCCC--CceEEEecCcCcccccc----
Confidence 68999999999996 78999999999999999999864 3 4559999986643 48999999999998753
Q ss_pred cCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhccccccCceEEE
Q 013368 111 HHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADSHVFNSLNVGIV 190 (444)
Q Consensus 111 ~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~~~~~~d~~~~ 190 (444)
| ..+. +++++||+ .|+++|++++|++++.|.+. +++.++.++|+.+||.|. .|++.+..... .+..++
T Consensus 71 ---~-~~~~-~~~i~g~a-~D~~~gva~lle~~r~l~~~--~~~~~v~~~~~~~EE~G~-~Ga~~~~~~~~---~~~~~~ 138 (264)
T d1yloa2 71 ---F-QVLP-HQRVMGKA-FDDRLSCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGL-RGGQTATRAVS---PDVAIV 138 (264)
T ss_dssp ---C-EEET-TTEEEETT-HHHHHHHHHHHHHHHHHTTC--CCSSEEEEEEESCCTTSS-HHHHHHHHHHC---CSEEEE
T ss_pred ---c-eecc-cccccccc-ccccccHHHHHHHHHHHhcC--CCCceEEEEEEeccccCC-CCccccccccc---cccccc
Confidence 1 2354 99999986 89999999999999998754 467899999999999995 79998876421 245566
Q ss_pred ec
Q 013368 191 LD 192 (444)
Q Consensus 191 ~~ 192 (444)
+|
T Consensus 139 ~D 140 (264)
T d1yloa2 139 LD 140 (264)
T ss_dssp EC
T ss_pred cc
Confidence 55
|
| >d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Allantoate amidohydrolase AllC catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=1.4e-19 Score=166.63 Aligned_cols=274 Identities=16% Similarity=0.150 Sum_probs=182.7
Q ss_pred hhHHHHHHHhhhcccCCC--------CCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEee
Q 013368 27 DDSIIERFRAYLQIDTSQ--------PNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSH 98 (444)
Q Consensus 27 ~~~~~~~l~~l~~i~s~s--------~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H 98 (444)
++++.+.|.+|-+|-... .+..+.++.+|+.++|+++|++++. | ...||+++++|+.++.|.|++.+|
T Consensus 5 ~~~l~~~l~~l~~~g~~~~gGvtR~~~s~~~~~a~~~l~~~~~~~Gl~v~~-D---~~GNvig~~~G~~~~~~~v~iGSH 80 (293)
T d1z2la1 5 RQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRF-D---EVGNLYGRLNGTEYPQEVVLSGSH 80 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTSSBCCCTTSHHHHHHHHHHHHHHHHTTCEEEE-C---TTSCEEEEECCSSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCeeeccCCHHHHHHHHHHHHHHHHcCCEEEE-e---cCCcEEEEEeccCCCCceeEeeee
Confidence 455666666666665421 2345778899999999999999874 3 344999999998766788999999
Q ss_pred cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccC----ccccHH
Q 013368 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIG----GHDGAE 174 (444)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g----~~~G~~ 174 (444)
+||||.+ |..|...|+++.|++++.|++.+.+++++|.++++.+||.+ ++.|++
T Consensus 81 lDtV~~g----------------------G~~Dg~~Gv~a~le~~~~l~~~~~~~~~~i~vv~f~~EEg~rFg~~~~GS~ 138 (293)
T d1z2la1 81 IDTVVNG----------------------GNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSK 138 (293)
T ss_dssp CCCCTTB----------------------CSSTTHHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSSCCSSSCSCHHHH
T ss_pred cccCCCC----------------------CCCCCchhHHHHHHHHHHHHhcCCCCCCCceeeeeecccccccCcccccch
Confidence 9999964 55688889999999999999998889999999999999953 234666
Q ss_pred HHHhccccccCceEEEeccCCCCcCCcceeeecccccEEEEEEEeecCCccCCCCCCCHHHHHHHHHHHHHhchhhhhHH
Q 013368 175 KFADSHVFNSLNVGIVLDEGLASTTEDYRAFYAERCPWWLVIKARGAPGHGAKLYDNSAMENLFKSIESVRRFRASQFDL 254 (444)
Q Consensus 175 ~~~~~~~~~~~d~~~~~~~g~~~p~~~~~i~~~~~G~~~~~i~v~G~~~Hs~~p~~gnai~~~~~~i~~l~~l~~~~~~~ 254 (444)
.+... +...++ ... ....|-.+ .+++.++.
T Consensus 139 ~~~G~--~~~~~~--------------~~~----------------------~D~~G~~l---~eal~~~G--------- 168 (293)
T d1z2la1 139 NIFGL--ANPDDV--------------RNI----------------------CDAKGNSF---VDAMKACG--------- 168 (293)
T ss_dssp HHTTC--CCGGGT--------------SSC----------------------CCSSSCCH---HHHHHHTT---------
T ss_pred hhcCC--Cchhhh--------------hhh----------------------hccCCccH---HHHHHHhc---------
Confidence 65542 211110 000 00011111 12221110
Q ss_pred HHhchhccCCceeeeeeeeccCCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEEeecccc
Q 013368 255 VKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEFKQRASL 334 (444)
Q Consensus 255 ~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 334 (444)
+.... ....-++...+.+++.....-.+ ++. +..+-+..
T Consensus 169 -------------~~~~~-----------~~~~~~~~~~a~lElHIEQGpvL-----------e~~--~~~IGVV~---- 207 (293)
T d1z2la1 169 -------------FTLPN-----------APLTPRQDIKAFVELHIEQGCVL-----------ESN--GQSIGVVN---- 207 (293)
T ss_dssp -------------CCCCS-----------SCCCCCCCEEEEEEEEECCSSHH-----------HHT--TCCEEEEE----
T ss_pred -------------cCccc-----------ccccccccchhheeeccccCcch-----------hhC--CCCeEEec----
Confidence 00000 01111233444445544433211 112 22333332
Q ss_pred cccCCCCCccccCCCChHHHHHHHHHHHhcCCCCCceeecCCcchHHHHhcCCC-eEEEccCCCCCCCCCCCCccccHHH
Q 013368 335 HDKFGRPILTATDSSNPWWNLLEEAVRKANGKLGKPEIFPASTDARYFRERGLP-AIGFSPMANTPILLHDHNEFLNQAE 413 (444)
Q Consensus 335 ~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~~~~gip-~v~~gp~~~~~~~~H~~~E~i~~~~ 413 (444)
. ....+..++..+.+.+++.+... ....+++++|+.+++.. +| +|.|.|...+ .+|+|+|+++.++
T Consensus 208 -------~--i~~~~~~~~~~~~~~a~~~g~~~-~~m~SGAGHDA~~~a~~-~Pt~MiFvps~~G--iSH~P~E~t~~eD 274 (293)
T d1z2la1 208 -------A--IVPMNKELVATLTELCEREKLNY-RVMHSGAGHDAQIFAPR-VPTCMIFIPSING--ISHNPAERTNITD 274 (293)
T ss_dssp -------E--EEECCHHHHHHHHHHHHHTTCCE-EEEEESSCCTHHHHTTT-SCEEEEEECCGGG--CCSSTTCCCCHHH
T ss_pred -------c--cccchhHHHHhhhhHHHHCCCCe-eeecCccHHHHHHHhcc-CCeeEEEeecCCC--cccCccccCCHHH
Confidence 0 02335678888888888888776 55667789999999977 77 5799999765 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 013368 414 YLKGIDIYESIIKAYAS 430 (444)
Q Consensus 414 l~~~~~~~~~~l~~l~~ 430 (444)
+.++.+++..++.+|+.
T Consensus 275 i~~g~~vL~~~l~~LA~ 291 (293)
T d1z2la1 275 LAEGVKTLALMLYQLAW 291 (293)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999975
|
| >d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Deblocking aminopeptidase YhfE species: Bacillus cereus [TaxId: 1396]
Probab=99.83 E-value=4.1e-20 Score=166.99 Aligned_cols=114 Identities=21% Similarity=0.263 Sum_probs=96.7
Q ss_pred ChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCC
Q 013368 26 SDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSE 105 (444)
Q Consensus 26 ~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~ 105 (444)
+.++.+++|++|++|||+| ++|.++++||+++|+++|++++.. ...|++++++|.++ .|+|+|.+|+|+
T Consensus 2 ~~~e~le~lk~L~~ips~S--g~e~~~~~~i~~~l~~~G~~~~~d----~~gniia~~~G~~~-~~~i~~~aH~Dt---- 70 (233)
T d2grea2 2 HTKETMELIKELVSIPSPS--GNTAKIINFIENYVSEWNVETKRN----NKGALILTVKGKND-AQHRLLTAHVDT---- 70 (233)
T ss_dssp HHHHHHHHHHHHHTSCCBT--TCCHHHHHHHHHHTTTSSSEEEEC----SSSCEEEEECCSEE-EEEEEEEEECCB----
T ss_pred cHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHHcCCeEEEe----cCCCEEEEecCCCc-cccEEEEeccCc----
Confidence 4588999999999999985 789999999999999999988753 45699999988754 489999999997
Q ss_pred CCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHH
Q 013368 106 PSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (444)
Q Consensus 106 ~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (444)
|+|++++++|++++.|++++.+++++|+++|+++||.|. .|+..+
T Consensus 71 -------------------------~dk~g~a~~l~~~~~l~~~~~~~~~~i~~~ft~~EE~G~-~Ga~~~ 115 (233)
T d2grea2 71 -------------------------LDKVSVAILLKLIKRLQDENVTLPYTTHFLISNNEEIGY-GGNSNI 115 (233)
T ss_dssp -------------------------CTHHHHHHHHHHHHHHHHHTCCCSEEEEEEEESCC-----CCCCCC
T ss_pred -------------------------cccCcHHHHHHHHHHHHHCCCCCCceEEEEEEeCcccCc-hhHHhh
Confidence 347899999999999999988999999999999999984 676443
|
| >d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Putative endoglucanase TM1048, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=3.7e-19 Score=163.32 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=108.3
Q ss_pred HHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCC
Q 013368 30 IIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKW 109 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W 109 (444)
..++|++|+++|++| ++|.++++||.++|++++.+++.. ...|++++++|.+ .++|+|.||||+|+...
T Consensus 3 ~~~~l~~l~~~~~~s--g~E~~v~~~i~~~l~~~~~~~~~d----~~gNvia~~~g~~--~~~i~l~aH~D~v~~~~--- 71 (248)
T d1vhoa2 3 TGKLLMELSNLDGPS--GYETNVVSYIKSVIEPFVDEAKTT----RHGSLIGYKKGKG--IGKLAFFAHVDEIIDQT--- 71 (248)
T ss_dssp HHHHHHHHHHSCCBT--TCCHHHHHHHHHHHGGGCSEEEEC----TTSCEEEEECCSS--SCEEEEEEECCBCECCC---
T ss_pred HHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCEEEEe----cCCcEEEEecCCC--CceEEEeccccceeccc---
Confidence 578899999999986 889999999999999999988643 4559999998764 47899999999998652
Q ss_pred ccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 110 SHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 110 ~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
...+ +|.++||+ .|+|+|++++|++++.|.+.+ ++.+|.++|+.+||.|. .|++.+...
T Consensus 72 ------~~~~-~~~~~~~a-~Dd~~G~a~~l~~~~~l~~~~--~~~~v~~~~~~~EE~G~-~Ga~~~~~~ 130 (248)
T d1vhoa2 72 ------AFET-NGKVVGKA-LDNRASCGVLVKVLEFLKRYD--HPWDVYVVFSVQEETGC-LGALTGAYE 130 (248)
T ss_dssp ------CEEE-TTEEEETT-HHHHHHHHHHHHHHHHHTTCC--CSSEEEEEEECTTSSSH-HHHHHTTCC
T ss_pred ------cccc-CCceeccC-CcccHhHHHHHHHHHHHhhcC--CCCceEEEEeecccCCC-Ccceehhhc
Confidence 2344 89999985 899999999999999997654 67899999999999985 799886553
|
| >d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Endoglucanase TM1049 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=2.9e-20 Score=171.49 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=97.6
Q ss_pred HHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCC
Q 013368 34 FRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHP 113 (444)
Q Consensus 34 l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~P 113 (444)
|++|++|||+| +.|.++++||+++|+++|++++.+ ...|++++++|.++ .|+|+|.||+||||....
T Consensus 3 l~~l~~i~s~s--g~E~~v~~~~~~~l~~~g~~v~~d----~~gNii~~~~G~~~-~~~i~l~aH~Dtv~~~~~------ 69 (255)
T d2fvga2 3 LKELSMMPGVS--GDEGKVRDFIKSKIEGLVDNLYTD----VLGNLIALKRGRDS-SKKLLVSAHMDEVFVSDY------ 69 (255)
T ss_dssp HHHHHHSCCBT--TCCHHHHHHHHHHHGGGSSEEEEC----TTSCEEEEECCSEE-EEEEEEEEECCBCECCCC------
T ss_pred HHHHhcCCCCC--CCHHHHHHHHHHHHHHcCCeEEEe----CCCCEEEEecCCCC-CCceEEEeccccccccee------
Confidence 78899999985 889999999999999999998753 34599999988654 378999999999998741
Q ss_pred CcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHHHhc
Q 013368 114 FGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKFADS 179 (444)
Q Consensus 114 f~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~ 179 (444)
.. .+..+++|+.|+|+|++++|++++.+. ++..++.++|+.+||.|+ .|+..+...
T Consensus 70 ---~~--~~~~~~~ga~Dd~~Gva~~l~~~~~~~----~~~~~i~~~~t~~EE~G~-~g~~~~~~~ 125 (255)
T d2fvga2 70 ---IE--KNGRAVGKAFDDRAGCSVLIDVLESGV----SPAYDTYFVFTVQEETGL-RGSAVVVEQ 125 (255)
T ss_dssp ---EE--ETTEEEESCHHHHHHHHHHHHHHHTCC----CCSEEEEEEEECCCC------CHHHHHH
T ss_pred ---cc--ccccccCCcccchHhHHHHHHHHHHhc----ccccceEEEEEeecccCC-cchhhhhhh
Confidence 12 455667788999999999998877542 467899999999999985 788887664
|
| >d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Peptidase-like beta-alanine synthase, catalytic domain species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.77 E-value=6.9e-19 Score=162.68 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=100.7
Q ss_pred CCCCChhHHHHHHHhhhc-ccCC---------------CCCCChhHHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecC
Q 013368 22 SPAKSDDSIIERFRAYLQ-IDTS---------------QPNPDYTNASKFILAQAEALSLESQTLEFAKNKPLILLKWPG 85 (444)
Q Consensus 22 ~~~~~~~~~~~~l~~l~~-i~s~---------------s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g 85 (444)
....|.+|+.+.+.+..+ +... ..+..+.++.+|+.++|+++|++++.. ...|++++++|
T Consensus 10 ~l~in~~RL~~~l~e~~~~~g~~~~~g~~~~~~G~tRla~S~~d~~ar~~l~~~~~~~Gl~v~~D----~~GNv~g~~~G 85 (322)
T d1r3na1 10 PLSIASGRLNQTILETGSQFGGVARWGQESHEFGMRRLAGTALDGAMRDWFTNECESLGCKVKVD----KIGNMFAVYPG 85 (322)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTEECCCSSSTTCCEECCCTTSHHHHHHHHHHHHHHHHHTCEEEEB----TTSCEEEEECC
T ss_pred CCCcCHHHHHHHHHHHHHhhccccccCCCCCCCCeecccCCHHHHHHHHHHHHHHHHcCCEEEEe----CCCcEEEEecC
Confidence 455677888776654432 1110 124457899999999999999988753 34599999999
Q ss_pred CCCCCCcEEEEeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCc
Q 013368 86 SNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDE 165 (444)
Q Consensus 86 ~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~E 165 (444)
.+++ +.|++.+|+||||.+ |..|...|+++.|++++.|++++.+++++|.++++.+|
T Consensus 86 ~~~~-~~v~~GSHlDTVp~G----------------------G~~DG~lGV~a~Levl~~l~e~~~~~~~~i~vv~f~~E 142 (322)
T d1r3na1 86 KNGG-KPTATGSHLDTQPEA----------------------GKYDGILGVLAGLEVLRTFKDNNYVPNYDVCVVVWFNE 142 (322)
T ss_dssp SSCS-SCEEEEECCCCCSSB----------------------CSSTTHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSCS
T ss_pred CCCC-CceEecCccccCCcC----------------------CCcCCccchHHHHHHHHHHhhhccCCCCCcEEEEeecc
Confidence 8765 569999999999975 44566679999999999999999999999999999999
Q ss_pred ccCc----cccHHHHHh
Q 013368 166 EIGG----HDGAEKFAD 178 (444)
Q Consensus 166 E~g~----~~G~~~~~~ 178 (444)
|.+. +.|++.+.-
T Consensus 143 Eg~rFg~~~lGS~~~~G 159 (322)
T d1r3na1 143 EGARFARSCTGSSVWSH 159 (322)
T ss_dssp SCSSBSSTTHHHHHHTT
T ss_pred ccccccccccccccccC
Confidence 9652 347777654
|
| >d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Streptomyces griseus [TaxId: 1911]
Probab=99.67 E-value=1.1e-16 Score=148.40 Aligned_cols=133 Identities=19% Similarity=0.367 Sum_probs=108.1
Q ss_pred CChhHHHHHHHhhhcccCCC------CCCChhHHHHHHHHHHHHCCCceEEEeecCC---CCeEEEEecCCCCCCCcEEE
Q 013368 25 KSDDSIIERFRAYLQIDTSQ------PNPDYTNASKFILAQAEALSLESQTLEFAKN---KPLILLKWPGSNPQLPSILL 95 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s------~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~---~~nl~~~~~g~~~~~~~i~l 95 (444)
.+.+++.+.|.+|..+.+.+ ++.++.++++||.++|+++|++++.++.... ..||+++++|.+++ +.|+|
T Consensus 4 i~~~~~~~~l~~l~~~~~~~~g~R~~gs~~~~~a~~yi~~~l~~~G~~~~~~~~~~~~~~~~Nvi~~~~g~~~~-~~i~~ 82 (277)
T d1tkja1 4 IPLANVKAHLTQLSTIAANNGGNRAHGRPGYKASVDYVKAKLDAAGYTTTLQQFTSGGATGYNLIANWPGGDPN-KVLMA 82 (277)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHTCEEEEEEEEETTEEEEEEEEECSCSEEE-EEEEE
T ss_pred CCHHHHHHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEeeeccCccccCeEEEECCCCCC-CEEEE
Confidence 34566777777777654432 2345678999999999999999987665322 24999999987553 67999
Q ss_pred EeecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHH
Q 013368 96 NSHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (444)
Q Consensus 96 ~~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (444)
.+|+|+|+.+ +|+.|+++|++++|++++.|++.+.+++++|.|+++.+||.|. .|++.
T Consensus 83 ~aH~D~~~~~---------------------~Ga~D~~sgva~~le~ar~l~~~~~~~~~~i~~~~~~~EE~g~-~Gs~~ 140 (277)
T d1tkja1 83 GAHLDSVSSG---------------------AGINDNGSGSAAVLETALAVSRAGYQPDKHLRFAWWGAEELGL-IGSKF 140 (277)
T ss_dssp EEECCCCTTS---------------------CCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGTS-HHHHH
T ss_pred Eccccccccc---------------------cccCCCccchHHHHHHHHHHHhhcCCCCcceEEeecccccccc-cccHH
Confidence 9999998853 4899999999999999999999888889999999999999984 79999
Q ss_pred HHhcc
Q 013368 176 FADSH 180 (444)
Q Consensus 176 ~~~~~ 180 (444)
++++.
T Consensus 141 ~~~~~ 145 (277)
T d1tkja1 141 YVNNL 145 (277)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 99864
|
| >d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Aminopeptidase species: Aeromonas proteolytica [TaxId: 671]
Probab=99.65 E-value=3.4e-16 Score=145.96 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=120.7
Q ss_pred CCChhHHHHHHHhhhcccCCC-CCCChhHHHHHHHHHHHHCCCce-----EEEeec-CCCCeEEEEecCCCCCCCcEEEE
Q 013368 24 AKSDDSIIERFRAYLQIDTSQ-PNPDYTNASKFILAQAEALSLES-----QTLEFA-KNKPLILLKWPGSNPQLPSILLN 96 (444)
Q Consensus 24 ~~~~~~~~~~l~~l~~i~s~s-~~~~e~~~~~~l~~~l~~~G~~~-----~~~~~~-~~~~nl~~~~~g~~~~~~~i~l~ 96 (444)
+.+.+++.+.++.|.++.+.. .+....++++||.++|+++|.++ +.+... .+.+||+++++|..+..+.|++.
T Consensus 16 ~v~~~~i~~~l~~L~sf~~R~~~s~~~~~a~~wi~~~~~~~g~~~~~~~~~~~~~~~~~~~Nvi~~~~G~~~~~~~ivv~ 95 (291)
T d1rtqa_ 16 QVDASQITGTISSLESFTNRFYTTTSGAQASDWIASEWQALSASLPNASVKQVSHSGYNQKSVVMTITGSEAPDEWIVIG 95 (291)
T ss_dssp GCCHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEETTEEEEEEEEEECCSSEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhCcCCCCCCChhHHHHHHHHHHHHHHhcCccCCceEEEecCCCCCcccEEEEecCCCCCCCEEEEE
Confidence 457788999999999887753 23456789999999999998653 222221 12469999999976545789999
Q ss_pred eecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccHHHH
Q 013368 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGAEKF 176 (444)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~~~~ 176 (444)
||+|+++.... ++.-.+.|+.|+++|++++|++++.|++.+.+++++|.|+++.+||.| +.|++++
T Consensus 96 aH~Ds~~~~~~-------------~~~~~~~Ga~D~~sGva~~le~ar~l~~~~~~~~~~i~f~~~~~EE~G-l~GS~~~ 161 (291)
T d1rtqa_ 96 GHLDSTIGSHT-------------NEQSVAPGADDDASGIAAVTEVIRVLSENNFQPKRSIAFMAYAAEEVG-LRGSQDL 161 (291)
T ss_dssp EECCCCSSTTC-------------CTTCCCCCTTTTHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESCGGGT-SHHHHHH
T ss_pred eecCCCCCCCc-------------CCCCCCCCCccchhhHHHHHHHHHHHHHhhcCCcCceEEeccccchhh-ccCcHHH
Confidence 99999986531 444556799999999999999999999988888999999999999998 5899999
Q ss_pred Hhccccc--cCceEEEecc
Q 013368 177 ADSHVFN--SLNVGIVLDE 193 (444)
Q Consensus 177 ~~~~~~~--~~d~~~~~~~ 193 (444)
+++.... ++...+.+|.
T Consensus 162 ~~~~~~~~~~i~~~inlDm 180 (291)
T d1rtqa_ 162 ANQYKSEGKNVVSALQLDM 180 (291)
T ss_dssp HHHHHHTTCEEEEEEECSC
T ss_pred HHhhhhhcchhhhhhhhhh
Confidence 9875322 2334566664
|
| >d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Succinyl-diaminopimelate desuccinylase species: Neisseria meningitidis [TaxId: 487]
Probab=99.65 E-value=4e-16 Score=124.45 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=86.1
Q ss_pred ccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccc
Q 013368 210 CPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (444)
Q Consensus 210 G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~i 288 (444)
|+++++|+++|+++|+|+|+.| |||..+++++..+..+.... ...+...++++++.+++|.. +.|+|
T Consensus 1 Gsl~~~i~i~Gk~gHaa~P~~g~NpI~~~~~~i~~l~~~~~~~-------~~~~~~~~~~~~t~i~~G~~-----~~NvI 68 (113)
T d1vgya2 1 GSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDE-------GNEYFPPTSFQISNINGGTG-----ATNVI 68 (113)
T ss_dssp EEEEEEEEEECBCEETTCGGGCBCHHHHHHHHHHHHHHCCCCC-------CCSSCCCCEEEEEEEEECCS-----CTTEE
T ss_pred CceEEEEEEEEEeecccCcccCCCcHHHHHHHHHHHHhhhccc-------CcccCCCcEEEEEEEEeccc-----ccccC
Confidence 6889999999999999999999 99999999999887653211 01122346899999998841 67999
Q ss_pred cCceEEEEEeecCCCCCHHHHHHHHHHHhccCCCCceEEE
Q 013368 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAPASRNMTFEF 328 (444)
Q Consensus 289 p~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 328 (444)
|+.|++.+|+|+.+.++.+.+.++|+++++......++++
T Consensus 69 P~~a~~~~~iR~~~~~~~~~i~~~i~~i~~~~~~~~~i~~ 108 (113)
T d1vgya2 69 PGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQW 108 (113)
T ss_dssp CSEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999999999999999999999999998875433333333
|
| >d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Protein YxeP species: Bacillus subtilis [TaxId: 1423]
Probab=99.61 E-value=4.9e-16 Score=124.46 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=77.4
Q ss_pred cEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCccccccc
Q 013368 211 PWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289 (444)
Q Consensus 211 ~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip 289 (444)
..+|+|+++|+++|+|.|+.| ||+.++++++..|+.+.....+ ....++++++.+++|. +.|+||
T Consensus 2 ~d~f~v~v~Gk~aHaa~P~~g~nai~~a~~~i~~l~~~~~~~~~--------~~~~~~~~~~~i~~G~------~~NvIP 67 (115)
T d1ysja2 2 VDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVSRNIS--------SLQNAVVSITRVQAGT------SWNVIP 67 (115)
T ss_dssp EEEEEEEEECC--------CCCCHHHHHHHHHHHHC-------------------CCEEEEEEEEECS------CSSSCC
T ss_pred ceEEEEEEEEecccccCcccCcCHHHHHHHHHHHhcccchhccc--------ccccccceeeEEecCc------cccccC
Confidence 357999999999999999999 9999999999999775432111 1134679999999987 899999
Q ss_pred CceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEee
Q 013368 290 SEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQ 330 (444)
Q Consensus 290 ~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~ 330 (444)
++|++.+|+|+.+.++.+.+.++|+++++. ..++++++++.
T Consensus 68 ~~~~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~ei~~ 110 (115)
T d1ysja2 68 DQAEMEGTVRTFQKEARQAVPEHMRRVAEGIAAGYGAQAEFKW 110 (115)
T ss_dssp SEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999999999999999999999998874 34678887774
|
| >d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Carboxypeptidase G2 species: Pseudomonas sp., strain rs-16 [TaxId: 306]
Probab=99.60 E-value=2e-15 Score=120.56 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=88.2
Q ss_pred ccEEEEEEEeecCCcc-CCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCccccc
Q 013368 210 CPWWLVIKARGAPGHG-AKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (444)
Q Consensus 210 G~~~~~i~v~G~~~Hs-~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ 287 (444)
|..+|+|+++|+++|| +.|+.| ||+..+++++..|..+... ...++++++.+++|. ..|+
T Consensus 2 G~~~~~v~~~Gk~~Hag~~P~~g~nAi~~a~~~i~~l~~~~~~------------~~~~~~~~~~~~gG~------~~Nv 63 (113)
T d1cg2a2 2 GIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDK------------AKNLRFNWTIAKAGN------VSNI 63 (113)
T ss_dssp EEEEEEEEEECBCEETTSCGGGSBCHHHHHHHHHHHHGGGCBT------------TTTEEEEEEEEEECS------STTE
T ss_pred CeEEEEEEEEeECccccCCccccCcchHHHHHHHHHHHhhhcc------------CCCcEEEEEEeeccc------cCcE
Confidence 7889999999999998 569999 9999999999999875431 234689999999987 9999
Q ss_pred ccCceEEEEEeecCCCCCHHHHHHHHHHHhccC-CCCceEEEee
Q 013368 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAPA-SRNMTFEFKQ 330 (444)
Q Consensus 288 ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~~~ 330 (444)
||++|++++|+|+.+.++.+++.++|+++++.. .+++++++..
T Consensus 64 IP~~~~~~~diR~~~~e~~~~v~~~i~~~~~~~~~~~~~~ev~~ 107 (113)
T d1cg2a2 64 IPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIV 107 (113)
T ss_dssp ECSEEEEEEEEEESSHHHHHHHHHHHHHHHTSCSSTTCEEEEEE
T ss_pred eCCEEEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCCEEEEEE
Confidence 999999999999999999999999999988742 3567777664
|
| >d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: IAA-amino acid hydrolase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.58 E-value=9.2e-16 Score=123.46 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=57.2
Q ss_pred ccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccccc
Q 013368 210 CPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQ 288 (444)
Q Consensus 210 G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~i 288 (444)
|..+|+|+|+|+++|+|.|+.| ||+.+++++++.|..+.....+ .....+++++.+++|. +.|+|
T Consensus 2 g~~~f~I~v~Gk~~Has~P~~g~nai~~~~~~i~~l~~~~~~~~~--------~~~~~~~~~g~i~gG~------a~NvI 67 (119)
T d1xmba2 2 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETD--------PLDSKVVTVSKVNGGN------AFNVI 67 (119)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTTCBCCSS--------GGGCEEEEEEEEC--------------
T ss_pred CceEEEEEEEeecccccCcccCCCHHHHHHHHHHhhhhccccccC--------cccccceeEEEcccCc------cceec
Confidence 6788999999999999999999 9999999999999876432211 1134678999999997 89999
Q ss_pred cCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEee
Q 013368 289 PSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQ 330 (444)
Q Consensus 289 p~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~ 330 (444)
|++|++.+|+|+.+.+ +.+.++|+++++. ..++++++++.
T Consensus 68 P~~a~~~~~iR~~~~~--~~i~~~i~~~~~~~a~~~g~~~~v~~ 109 (119)
T d1xmba2 68 PDSITIGGTLRAFTGF--TQLQQRVKEVITKQAAVHRCNASVNL 109 (119)
T ss_dssp CCEEEEEEEEEESSCH--HHHHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCeEEEEEEEecCChH--HHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 9999999999988644 4677888777753 34677787774
|
| >d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Glutamate carboxypeptidase II FOLH1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.2e-13 Score=126.49 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=106.7
Q ss_pred CChhHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceEEEeec------CCCCeEEEEecCCCCCCCcEEEEee
Q 013368 25 KSDDSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQTLEFA------KNKPLILLKWPGSNPQLPSILLNSH 98 (444)
Q Consensus 25 ~~~~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~------~~~~nl~~~~~g~~~~~~~i~l~~H 98 (444)
-..++..+.++.+.++|....+....++++||++.++++|++....... ....||+|+++|+....+.|++.+|
T Consensus 9 ~~~~~~~~~l~~~~~~p~~~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~Nvi~~i~G~~~~~~~ii~~aH 88 (304)
T d3bi1a3 9 LKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQWKEFGLDSVELAHYDVLLEVTRIYNVIGTLRGAVEPDRYVILGGH 88 (304)
T ss_dssp CCHHHHHHHHHHHSSSCCCTTSHHHHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEEEEEEEEEEECCSSEEEEEEEEEEE
T ss_pred hCHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHhCCcceeeeeeecccCcceeEEEEEEEECCCCCCcEEEEEec
Confidence 4568888999999999998766666789999999999999976433221 1234999999986532357999999
Q ss_pred cccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHH---HcCCCCcceEEEEeecCcccCccccHHH
Q 013368 99 TDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLK---ASGFQPVRSVYLSFVPDEEIGGHDGAEK 175 (444)
Q Consensus 99 ~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~---~~~~~~~~~i~~~~~~~EE~g~~~G~~~ 175 (444)
+|++.. |+.|+.+|++++|++++.|. +.+.+++++|.|+++.+||.| +.|++.
T Consensus 89 ~Ds~~~-----------------------Ga~D~~sG~a~lle~ar~l~~~~~~~~~p~~ti~f~~~~~EE~g-l~Gs~~ 144 (304)
T d3bi1a3 89 RDSWVF-----------------------GGIDPQSGAAVVHEIVRSFGTLKKEGWRPRRTILFASWDAEEFG-LLGSTE 144 (304)
T ss_dssp CCCSSC-----------------------CTTTTHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEESSGGGT-SHHHHH
T ss_pred cccccC-----------------------CCCCCcchhHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCcccc-ccchHH
Confidence 998532 78899999999999999765 456788999999999999998 589999
Q ss_pred HHhcc
Q 013368 176 FADSH 180 (444)
Q Consensus 176 ~~~~~ 180 (444)
++++.
T Consensus 145 ~~~~~ 149 (304)
T d3bi1a3 145 WAEEN 149 (304)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99754
|
| >d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Allantoate amidohydrolase AllC species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=3.1e-13 Score=108.25 Aligned_cols=105 Identities=7% Similarity=0.059 Sum_probs=80.7
Q ss_pred ccEEEEEEEeecCCcc-CCCC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCcccc
Q 013368 210 CPWWLVIKARGAPGHG-AKLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMN 286 (444)
Q Consensus 210 G~~~~~i~v~G~~~Hs-~~p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n 286 (444)
|..|++|+|+|+++|+ +.|+ .+ ||+.+++.++..|.++.... .............+|. +.|
T Consensus 2 G~~~~~v~~~G~~aHAGs~P~~~~~~al~aaa~~~~~l~~~~~~~----------~~~~~~~~~~~~~g~~------~~N 65 (117)
T d1z2la2 2 GQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRM----------GDPLVLTFGKVEPRPN------TVN 65 (117)
T ss_dssp EEEEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHHH----------CTTCEEECCCEEEESC------CTT
T ss_pred CceEEEEEEEEECCCCCCCcccccccHHHHHHHHHHHHHHHHHhc----------cCCccceEEEEEecCC------ccc
Confidence 7889999999999998 5685 45 99999999999987653211 1122233334444443 889
Q ss_pred cccCceEEEEEeecCCCCCHHHHHHHHHHHhcc--CCCCceEEEee
Q 013368 287 LQPSEAEAGFDIRVPPTTDAESLERRIVEEWAP--ASRNMTFEFKQ 330 (444)
Q Consensus 287 ~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~ 330 (444)
+||++|++.+|+|+.+.+..+++.+++++.++. ...+++++++.
T Consensus 66 vIP~~a~~~~diR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~ie~ 111 (117)
T d1z2la2 66 VVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDL 111 (117)
T ss_dssp EECCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred eeCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999988874 34677777774
|
| >d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Glutaminyl-peptide cyclotransferase-like domain: Glutaminyl-peptide cyclotransferase, QPCT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.6e-12 Score=123.29 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=92.9
Q ss_pred cCCCCCCChhHHHHHHHHHHHHCCCceEE--Eeec-------CCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCcc
Q 013368 41 DTSQPNPDYTNASKFILAQAEALSLESQT--LEFA-------KNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSH 111 (444)
Q Consensus 41 ~s~s~~~~e~~~~~~l~~~l~~~G~~~~~--~~~~-------~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~ 111 (444)
|-..++.+..++++||.+.|+++|.++.. .... ....||||+++|.. .+.|++.||+|+++.+. |
T Consensus 44 pR~~Gs~g~~~a~~~i~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~Nvia~l~g~~--~~~ili~aHyDs~~~~~--~-- 117 (329)
T d2afwa1 44 ERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTA--KRHLVLACHYDSKYFSH--W-- 117 (329)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHTSSSCCEEEEEEEEECCTTSSEEEEEEEEESSTTS--SEEEEEEEECCCCCCCC--B--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEeccccCCceeEEEEEEeCCCC--CceEEEEeeeccCCccc--c--
Confidence 55545567789999999999999865433 2221 12359999998863 36899999999998763 1
Q ss_pred CCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHc--------CCCCcceEEEEeecCcccCc-------cccHHHH
Q 013368 112 HPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKAS--------GFQPVRSVYLSFVPDEEIGG-------HDGAEKF 176 (444)
Q Consensus 112 ~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~--------~~~~~~~i~~~~~~~EE~g~-------~~G~~~~ 176 (444)
++. .-.|+.|+.+|+|++|+++|.|.+. +.+++.+|.|+++.+||.|. +.|++++
T Consensus 118 ---------~~~-~~pGA~DnaSGvA~lLElAR~l~~~~~~~~~~~~~~p~~tI~fv~f~gEE~G~~~~~~~~l~GS~~~ 187 (329)
T d2afwa1 118 ---------NNR-VFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHL 187 (329)
T ss_dssp ---------TTB-CCCCTTTTHHHHHHHHHHHHHTHHHHHTTC------CCEEEEEEEESCCSCSSSCCSSSSCHHHHHH
T ss_pred ---------ccc-CCCCCCCccHHHHHHHHHHHHHHHhhhhhhhcccCCCCceEEEEEecccccccccccccccccHHHH
Confidence 111 1249999999999999999999863 34678999999999999872 5799999
Q ss_pred Hhcc
Q 013368 177 ADSH 180 (444)
Q Consensus 177 ~~~~ 180 (444)
+++.
T Consensus 188 a~~~ 191 (329)
T d2afwa1 188 AAKM 191 (329)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9853
|
| >d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Peptidase-like beta-alanine synthase species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.32 E-value=2e-12 Score=103.20 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=77.1
Q ss_pred cEEEEEEEeecCCccC-CCC-CC-CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCccccc
Q 013368 211 PWWLVIKARGAPGHGA-KLY-DN-SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNL 287 (444)
Q Consensus 211 ~~~~~i~v~G~~~Hs~-~p~-~g-nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ 287 (444)
..||+|+|+|+++||| .|+ .+ ||+.+++.++..+..+... ...+.+++.+..|. +..|+
T Consensus 2 ~~W~~v~v~G~~aHAGs~P~~~~~da~~aa~~~i~~l~~~~~~-------------~~~~~tv~~~~~g~-----~~~Nv 63 (116)
T d1r3na2 2 YNWQKVTVHGVGAHAGTTPWRLRKDALLMSSKMIVAASEIAQR-------------HNGLFTCGIIDAKP-----YSVNI 63 (116)
T ss_dssp EEEEEEEEECCCEETTTSCGGGCCCHHHHHHHHHHHHHHHHHH-------------TTCEEECCCEEEES-----CCTTE
T ss_pred ceEEEEEEEEECcccCCCcccccchHHHHHHHHHhhccccccc-------------CCceEEEEEEEecC-----cccce
Confidence 4589999999999985 584 55 9999999999998765321 11234566665542 27899
Q ss_pred ccCceEEEEEeecCCCCCHHHHHHHHHHHhcc---C--CCCceEEEee
Q 013368 288 QPSEAEAGFDIRVPPTTDAESLERRIVEEWAP---A--SRNMTFEFKQ 330 (444)
Q Consensus 288 ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~~---~--~~~~~~~~~~ 330 (444)
||++|++.+|+|..+.+..+.+.++|++.++. . ..+++++++.
T Consensus 64 IP~~a~~~~d~R~~~~~~~~~i~~~i~~~~~~~a~~~~~~~v~~e~e~ 111 (116)
T d1r3na2 64 IPGEVSFTLDFRHPSDDVLATMLKEAAAEFDRLIKINDGGALSYESET 111 (116)
T ss_dssp ECSEEEEEEEEEESCHHHHHHHHHHHHHHHHHHTTCCTTCCCEEEEEE
T ss_pred eCCEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCccEEEEEEE
Confidence 99999999999999999999999999887753 1 2346666553
|
| >d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: FolH catalytic domain-like domain: Transferrin receptor ectodomain, protease-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4.1e-12 Score=118.01 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=90.8
Q ss_pred CCCCChhHHHHHHHHHHHHCCCceEEEeec----CCCCeEEEEecCCCCCCCcEEEEeecccccCCCCCCccCCCcceec
Q 013368 44 QPNPDYTNASKFILAQAEALSLESQTLEFA----KNKPLILLKWPGSNPQLPSILLNSHTDVVPSEPSKWSHHPFGAHLD 119 (444)
Q Consensus 44 s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~----~~~~nl~~~~~g~~~~~~~i~l~~H~Dtvp~~~~~W~~~Pf~~~~~ 119 (444)
..+.+..++++||+++|+++|++....+.. ....||++.++|.....+.|++.||+|+..
T Consensus 36 ~gs~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~Nvig~i~G~~~~~~~ivigaH~Ds~~---------------- 99 (294)
T d1de4c3 36 AGSQKDENLALYVENQFREFKLSKVWRDQHFVKEIKILNIFGVIKGFVEPDHYVVVGAQRDAWG---------------- 99 (294)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEEEECCSSEEEEEEEEEEECCCSS----------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccccccccccCCccceEEEEEeCCCCCCceEEEEeeccccc----------------
Confidence 334567789999999999999975433311 123599999998643335799999999842
Q ss_pred CCCeEEecCcccchhHHHHHHHHHHHHHH----cCCCCcceEEEEeecCcccCccccHHHHHhcc
Q 013368 120 SQGNIFARGSQDMKCVGMQYLEAIRRLKA----SGFQPVRSVYLSFVPDEEIGGHDGAEKFADSH 180 (444)
Q Consensus 120 ~~g~l~GrG~~D~k~~~a~~l~a~~~l~~----~~~~~~~~i~~~~~~~EE~g~~~G~~~~~~~~ 180 (444)
.|+.|+.+|++++|+++|.|.+ .+.+++++|.|++..+||.| +.|+++++++.
T Consensus 100 -------~GA~DnasG~a~llelar~l~~~~~~~g~~P~rtI~f~~~~~EE~G-l~GS~~~~~~~ 156 (294)
T d1de4c3 100 -------PGAAKSGVGTALLLKLAQMFSDMVLKDGFQPSRSIIFASWSAGDFG-SVGATEWLEGY 156 (294)
T ss_dssp -------CCTTTTHHHHHHHHHHHHHHHHHHHSSCCCCSEEEEEEEECCCTTT-SHHHHHHHHHS
T ss_pred -------ccccCCchhHHHHHHHHHHHHhhhhhcCCCCCceEEEEEecCcccc-ccCHHHHHHhC
Confidence 3889999999999999999965 46788999999999999998 68999999864
|
| >d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Aminopeptidase PepV species: Lactobacillus delbrueckii [TaxId: 1584]
Probab=99.13 E-value=2.9e-11 Score=105.67 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=79.6
Q ss_pred ccccEEEEEEEeecCCccCCCCCC-CHHHHHHHHHHHHHhchhh--hhHHHHhc--hhccC-------Cceeeeeeeecc
Q 013368 208 ERCPWWLVIKARGAPGHGAKLYDN-SAMENLFKSIESVRRFRAS--QFDLVKAG--LKAEG-------EVVSVNMAFLKA 275 (444)
Q Consensus 208 ~~G~~~~~i~v~G~~~Hs~~p~~g-nai~~~~~~i~~l~~l~~~--~~~~~~~~--~~~~~-------~~~t~~~~~i~~ 275 (444)
.++...++|+++|+++|+|.|+.| |||..+++++..|...... .++.+... ....+ ...+.+.+++++
T Consensus 67 ~~~~~~~~i~~~Gk~aHss~P~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~t~~~ 146 (196)
T d1lfwa2 67 EINDESADIVLIGQGAHASAPQVGKNSATFLALFLDQYAFAGRDKNFLHFLAEVEHEDFYGKKLGIFHHDDLMGDLASSP 146 (196)
T ss_dssp EEETTEEEEEEECBCCBTTCGGGSBCHHHHHHHHHTTSCBCHHHHHHHHHHHHTTTTCTTSTTTTCCCEETTTEECEEEE
T ss_pred EEecceEEEEEEEEECCccCcccCcCHHHHHHHHHHHhhhccchhhhhhhhhhhhcccccccccCCcccCceecCeEEee
Confidence 455667999999999999999999 9999999999887643321 11111110 00111 123456778888
Q ss_pred CCCCCCCcccccccCceEEEEEeecCCCCCHHHHHHHHHHHhc
Q 013368 276 GTPSPNGFVMNLQPSEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (444)
Q Consensus 276 G~~~~~~~~~n~ip~~~~~~~d~R~~~~~~~~~i~~~i~~~~~ 318 (444)
|. ..|++|++|++.+|+|+++..+.+++.++|++.+.
T Consensus 147 G~------~~n~~p~~~~~~~diR~p~~~~~e~i~~~i~~~~~ 183 (196)
T d1lfwa2 147 SM------FDYEHAGKASLLNNVRYPQGTDPDTMIKQVLDKFS 183 (196)
T ss_dssp EE------EEEETTSCEEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred ee------EeeccCCeEEEEEEEccCCCCCHHHHHHHHHHHhc
Confidence 87 88999999999999999999999999999998885
|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Frv operon protein FrvX, catalytic domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.44 E-value=1.5e-06 Score=77.90 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCceeecCCcchHHH--HhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q 013368 350 NPWWNLLEEAVRKANGKLGKPEIFPASTDARYF--RERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYESIIKA 427 (444)
Q Consensus 350 ~~l~~~~~~a~~~~~~~~~~~~~~~g~tD~~~~--~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~~l~~ 427 (444)
..+.+.+.+++++.+.+........|+||+..+ +..|+|++.+|.+.. ..|++.|.++++++...++++..+++.
T Consensus 108 ~~l~~~l~~~a~~~~ip~Q~~~~~~gGtd~~~i~~~~~Gi~t~~igiP~r---ymHS~~E~~~~~Di~~~~kLl~~~l~~ 184 (255)
T d1y0ya2 108 PTIVRWLEELAKKHEIPYQLEILLGGGTDAGAIHLTKAGVPTGALSVPAR---YIHSNTEVVDERDVDATVELMTKALEN 184 (255)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSSCCCTHHHHTTSTTCCCEEEEEEEEB---SCSSSCEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEecccCCCccHHHHHHhCCCCCEEEeccccc---cCcchhheeeHHHHHHHHHHHHHHHHH
Confidence 345555555555544433111223477888765 467999999987655 499999999999999999999999998
Q ss_pred HH
Q 013368 428 YA 429 (444)
Q Consensus 428 l~ 429 (444)
|.
T Consensus 185 l~ 186 (255)
T d1y0ya2 185 IH 186 (255)
T ss_dssp GG
T ss_pred hh
Confidence 74
|
| >d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Frv operon protein FrvX, catalytic domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.53 E-value=5.8e-06 Score=73.92 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccCCCCCCChh-HHHHHHHHHHHHCCCceEEEeecCCCCeEEEEecCCCCCCCcEEEEeecccc
Q 013368 30 IIERFRAYLQIDTSQPNPDYT-NASKFILAQAEALSLESQTLEFAKNKPLILLKWPGSNPQLPSILLNSHTDVV 102 (444)
Q Consensus 30 ~~~~l~~l~~i~s~s~~~~e~-~~~~~l~~~l~~~G~~~~~~~~~~~~~nl~~~~~g~~~~~~~i~l~~H~Dtv 102 (444)
..++|++|++.|++| +.|. .+++++++++++++.+++.. ...|+++..+|. .|+|+|.||||.|
T Consensus 191 ~~~~l~~l~~~~~~s--g~E~~~v~~~~~~~~~~~~d~~~~D----~~Gn~~~~~~~~---~~~i~~~aH~Dei 255 (255)
T d1y0ya2 191 DYELLKKVVEAPGVS--GYEFLGIRDVVIEEIKDYVDEVKVD----KLGNVIAHKKGE---GPKVMIAAHMDQI 255 (255)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCC--CCccHHHHHHHHHHHHhhCCeEEEC----CCCCEEEEEcCC---CCEEEEEeccccC
Confidence 478899999999996 7885 68999999999998777643 345999998653 4899999999976
|
| >d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Probable aminopeptidase ApeA species: Borrelia burgdorferi [TaxId: 139]
Probab=95.19 E-value=0.0084 Score=54.26 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHhcCCCCC-----ceeecCCcchHHHHhcCCCeEEEccCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 013368 349 SNPWWNLLEEAVRKANGKLGK-----PEIFPASTDARYFRERGLPAIGFSPMANTPILLHDHNEFLNQAEYLKGIDIYES 423 (444)
Q Consensus 349 ~~~l~~~~~~a~~~~~~~~~~-----~~~~~g~tD~~~~~~~gip~v~~gp~~~~~~~~H~~~E~i~~~~l~~~~~~~~~ 423 (444)
+..++..+.+.+++.+.+... ....+|+|++.+++..|+|++-+|.... .+|++.|-+...++...+++|..
T Consensus 242 ~~~~~~~~~~ia~~~~Ip~Q~~~v~r~d~~gGsTig~i~a~~Gi~tvdiGiP~l---~MHS~rE~~~~~D~~~~~~l~~a 318 (322)
T d1y7ea2 242 DAELVSYIRQLLNKNNIAWQVATLGKVEEGGGGTVAKFLAGYGIRTIDMGPAVI---SMHSPMEITSKFDLYNAYLAYKA 318 (322)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECC-----CHHHHHHHHHHTCEEEEECCEEB---STTSSSEEEEHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCeeEEEeccCCCCCcchHHHHHhcCCCCEEEcCHHHh---hhhHHHHHhchhhHHHHHHHHHH
Confidence 445556666666655543211 1134588999999889999999998776 39999999999999999999887
Q ss_pred HHH
Q 013368 424 IIK 426 (444)
Q Consensus 424 ~l~ 426 (444)
+++
T Consensus 319 F~e 321 (322)
T d1y7ea2 319 FYR 321 (322)
T ss_dssp TTT
T ss_pred Hhc
Confidence 653
|
| >d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Zn-dependent exopeptidases family: Bacterial dinuclear zinc exopeptidases domain: Probable aminopeptidase ApeA species: Borrelia burgdorferi [TaxId: 139]
Probab=95.17 E-value=0.0052 Score=55.69 Aligned_cols=134 Identities=22% Similarity=0.243 Sum_probs=76.0
Q ss_pred hHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHHHCCCceE----EE------eecCCCCeEEEEecCCCC-CCCcEEEE
Q 013368 28 DSIIERFRAYLQIDTSQPNPDYTNASKFILAQAEALSLESQ----TL------EFAKNKPLILLKWPGSNP-QLPSILLN 96 (444)
Q Consensus 28 ~~~~~~l~~l~~i~s~s~~~~e~~~~~~l~~~l~~~G~~~~----~~------~~~~~~~nl~~~~~g~~~-~~~~i~l~ 96 (444)
+++.+..++++++=..+ +-+..+.+++.++|++.||+.- .. ........+++...|..+ ....-++.
T Consensus 13 ~~~~~~a~~~~~Fl~~~--~T~~hav~~~~~~L~~~GF~~l~e~~~~~~g~k~y~~~~~~sliaf~iG~~~~~~G~~iig 90 (322)
T d1y7ea2 13 NQILNFSESYKKFISKF--KTEREVTAYALDKAKKLGFINAEEKKNLMPGDKIFYTCREKSVAFAIIGKNPIEDGMNFIV 90 (322)
T ss_dssp HHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTTCEESTTCCCCCTTCEEECBCSSSCBCCEECCSSCGGGCCEECC
T ss_pred HHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHCcCeECCCCCcccCCCeEEEEeCCCEEEEEEeCCCCccCCeEEEE
Confidence 44555555555554443 4567899999999999999421 00 111122357666666543 11234678
Q ss_pred eecccccCCCCCCccCCCcceecCCCeEEecCcccchhHHHHHHHHHHHHHHcCCCCcceEEEEeecCcccCccccH
Q 013368 97 SHTDVVPSEPSKWSHHPFGAHLDSQGNIFARGSQDMKCVGMQYLEAIRRLKASGFQPVRSVYLSFVPDEEIGGHDGA 173 (444)
Q Consensus 97 ~H~Dtvp~~~~~W~~~Pf~~~~~~~g~l~GrG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~G~ 173 (444)
+|.|.=... ..+|.-.-.+ +..|.+.| -|+..++-+.|.|+. +....+....+++++-.||+|+ .|+
T Consensus 91 aHtDSPr~~----a~~~~~~G~d-~efi~s~r-lDd~~~~~~~l~Ali---~~~~~~~~~~v~~~~D~EEIGS-~s~ 157 (322)
T d1y7ea2 91 SHTDSPRVP----AGTAKDVGFD-KALIGAYG-QDDKICVFTSLESIF---DLEETPNKTAICFLVDKEEIGS-TGS 157 (322)
T ss_dssp CBCCCCBEE----CSCCEEETTT-TCEEEESS-HHHHHHHHHHHHHHS---SSSCCCSSCEECCCBCSTTC------
T ss_pred EecCCCchh----hccccccccc-cceeeccC-CccHHHHHHHHHHHH---hhhcCCCceEEEEEecccccCC-Ccc
Confidence 999973221 1122222233 66676666 788888877777653 3322345666777888999986 444
|
| >d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Bacterial exopeptidase dimerisation domain family: Bacterial exopeptidase dimerisation domain domain: Peptidase T (tripeptidase) species: Salmonella typhimurium [TaxId: 90371]
Probab=95.10 E-value=0.069 Score=39.86 Aligned_cols=87 Identities=21% Similarity=0.084 Sum_probs=62.0
Q ss_pred EEEEEEEeecCCccCCCCCC--CHHHHHHHHHHHHHhchhhhhHHHHhchhccCCceeeeeeeeccCCCCCCCccccccc
Q 013368 212 WWLVIKARGAPGHGAKLYDN--SAMENLFKSIESVRRFRASQFDLVKAGLKAEGEVVSVNMAFLKAGTPSPNGFVMNLQP 289 (444)
Q Consensus 212 ~~~~i~v~G~~~Hs~~p~~g--nai~~~~~~i~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~i~~G~~~~~~~~~n~ip 289 (444)
...+|+++|.+.|-|..-.. ||+..++++++.|-.-..+ ....|..-=+.+..++|+.
T Consensus 4 a~a~i~i~G~svHPG~AKgkMvNA~~~A~ef~~~LP~~e~P--------E~Teg~EGF~hl~~~~G~v------------ 63 (113)
T d1fnoa3 4 ASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAP--------ETTEGYEGFYHLASMKGTV------------ 63 (113)
T ss_dssp EEEEEEEECBCCCGGGCTTTCBCHHHHHHHHHHTSCTTSSG--------GGCCTTCCEEEEEEEEECS------------
T ss_pred ceEEEEEEEEEeCCcchhhHHHhHHHHHHHHHHhCCCCCCC--------CccCCccceEEEeeeeech------------
Confidence 45789999999998875433 9999999998877532111 1122222236677777763
Q ss_pred CceEEEEEeecCCCCCHHHHHHHHHHHhc
Q 013368 290 SEAEAGFDIRVPPTTDAESLERRIVEEWA 318 (444)
Q Consensus 290 ~~~~~~~d~R~~~~~~~~~i~~~i~~~~~ 318 (444)
+.+++.+-+|-.+.+..+.-++.++++++
T Consensus 64 e~a~l~yIIRDfd~~~f~~rk~~l~~~~~ 92 (113)
T d1fnoa3 64 DRAEMHYIIRDFDRKQFEARKRKMMEIAK 92 (113)
T ss_dssp SEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHEEEEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 79999999999988877777777766554
|